Query 009559
Match_columns 532
No_of_seqs 262 out of 1409
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 14:35:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009559.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009559hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02564 6-phosphofructokinase 100.0 5E-124 1E-128 998.5 44.5 429 77-532 15-449 (484)
2 PLN02884 6-phosphofructokinase 100.0 1E-119 3E-124 954.0 43.9 411 122-532 1-411 (411)
3 PRK06830 diphosphate--fructose 100.0 6E-119 1E-123 955.2 44.8 430 78-532 9-440 (443)
4 PTZ00286 6-phospho-1-fructokin 100.0 3E-115 7E-120 930.7 43.5 396 121-532 45-444 (459)
5 PRK06555 pyrophosphate--fructo 100.0 3E-90 6.5E-95 726.2 37.8 345 174-530 3-400 (403)
6 PRK14071 6-phosphofructokinase 100.0 2.1E-85 4.5E-90 685.2 35.3 333 174-522 4-351 (360)
7 cd00363 PFK Phosphofructokinas 100.0 1.7E-84 3.7E-89 673.7 36.9 325 175-522 1-336 (338)
8 PRK14072 6-phosphofructokinase 100.0 3.5E-84 7.6E-89 686.9 35.9 329 174-514 3-364 (416)
9 TIGR02483 PFK_mixed phosphofru 100.0 4.5E-83 9.7E-88 659.4 33.1 312 176-506 1-324 (324)
10 cd00763 Bacterial_PFK Phosphof 100.0 3.1E-82 6.8E-87 651.3 34.5 307 175-523 1-313 (317)
11 TIGR02482 PFKA_ATP 6-phosphofr 100.0 8.4E-82 1.8E-86 643.9 33.0 295 176-506 1-301 (301)
12 PRK03202 6-phosphofructokinase 100.0 4.1E-80 8.8E-85 636.4 35.8 301 175-514 2-309 (320)
13 COG0205 PfkA 6-phosphofructoki 100.0 1E-78 2.2E-83 629.2 31.5 328 174-529 2-340 (347)
14 TIGR02477 PFKA_PPi diphosphate 100.0 1.7E-76 3.6E-81 643.1 37.5 350 172-524 65-502 (539)
15 TIGR02478 6PF1K_euk 6-phosphof 100.0 5E-76 1.1E-80 659.8 36.2 329 175-524 1-357 (745)
16 TIGR02478 6PF1K_euk 6-phosphof 100.0 6.8E-76 1.5E-80 658.7 37.1 343 159-525 373-736 (745)
17 cd00764 Eukaryotic_PFK Phospho 100.0 7.7E-76 1.7E-80 656.5 35.6 319 173-512 2-346 (762)
18 PRK07085 diphosphate--fructose 100.0 4.3E-75 9.3E-80 633.4 36.6 345 174-522 70-509 (555)
19 PLN03028 pyrophosphate--fructo 100.0 9.1E-75 2E-79 634.7 35.4 344 161-507 66-482 (610)
20 cd00765 Pyrophosphate_PFK Phos 100.0 1.3E-74 2.9E-79 627.9 36.2 348 172-523 70-513 (550)
21 PLN02251 pyrophosphate-depende 100.0 8.5E-73 1.8E-77 615.1 36.6 347 173-523 95-528 (568)
22 PF00365 PFK: Phosphofructokin 100.0 1.1E-72 2.4E-77 572.6 25.3 276 175-483 1-282 (282)
23 cd00764 Eukaryotic_PFK Phospho 100.0 6.2E-71 1.4E-75 617.0 33.6 324 174-525 389-736 (762)
24 PTZ00468 phosphofructokinase f 100.0 1.1E-70 2.4E-75 629.8 35.2 346 174-523 102-529 (1328)
25 PTZ00287 6-phosphofructokinase 100.0 1.1E-69 2.5E-74 625.1 37.3 345 174-522 177-600 (1419)
26 PTZ00287 6-phosphofructokinase 100.0 1.5E-63 3.4E-68 574.4 33.4 328 173-507 835-1271(1419)
27 PTZ00468 phosphofructokinase f 100.0 4.8E-57 1.1E-61 517.7 32.1 332 173-508 674-1134(1328)
28 KOG2440 Pyrophosphate-dependen 100.0 2E-60 4.4E-65 519.1 3.7 430 80-532 49-535 (666)
29 KOG2440 Pyrophosphate-dependen 100.0 1.1E-36 2.4E-41 333.3 20.0 298 179-506 1-321 (666)
30 PRK04761 ppnK inorganic polyph 93.3 0.23 5.1E-06 50.5 7.2 60 257-331 12-80 (246)
31 cd01537 PBP1_Repressors_Sugar_ 93.2 3.1 6.8E-05 39.5 14.4 126 176-346 1-126 (264)
32 cd06320 PBP1_allose_binding Pe 93.2 9.2 0.0002 37.4 21.0 92 176-303 1-92 (275)
33 PRK14077 pnk inorganic polypho 93.1 0.24 5.1E-06 51.5 6.9 53 264-331 64-118 (287)
34 PF00532 Peripla_BP_1: Peripla 93.0 3.2 7E-05 42.1 15.0 174 176-402 3-188 (279)
35 PLN02929 NADH kinase 92.8 0.26 5.6E-06 51.6 6.8 63 263-331 63-135 (301)
36 PRK04885 ppnK inorganic polyph 92.7 0.35 7.6E-06 49.7 7.5 55 264-331 35-91 (265)
37 PRK00561 ppnK inorganic polyph 91.7 0.26 5.6E-06 50.6 5.1 61 255-330 19-87 (259)
38 TIGR01917 gly_red_sel_B glycin 91.6 0.2 4.3E-06 54.5 4.3 123 172-299 221-370 (431)
39 PRK03501 ppnK inorganic polyph 91.6 0.51 1.1E-05 48.5 7.1 55 264-331 39-95 (264)
40 COG3199 Predicted inorganic po 91.4 0.2 4.3E-06 53.2 3.9 52 246-305 84-135 (355)
41 PF01513 NAD_kinase: ATP-NAD k 91.2 0.17 3.7E-06 51.9 3.3 63 255-332 67-131 (285)
42 PRK14075 pnk inorganic polypho 91.2 0.65 1.4E-05 47.4 7.3 51 263-331 40-92 (256)
43 PRK01911 ppnK inorganic polyph 90.5 0.39 8.5E-06 50.0 5.1 116 175-332 1-119 (292)
44 TIGR01918 various_sel_PB selen 90.4 0.46 1E-05 51.8 5.7 123 172-299 221-370 (431)
45 PRK04539 ppnK inorganic polyph 90.0 0.47 1E-05 49.5 5.2 115 175-331 6-122 (296)
46 PRK03372 ppnK inorganic polyph 89.9 0.42 9E-06 50.2 4.8 54 264-332 72-127 (306)
47 PRK02649 ppnK inorganic polyph 89.7 0.53 1.1E-05 49.4 5.3 53 264-331 68-122 (305)
48 PRK10014 DNA-binding transcrip 89.6 26 0.00056 35.7 18.7 86 175-299 65-150 (342)
49 cd06281 PBP1_LacI_like_5 Ligan 89.5 22 0.00047 34.7 16.7 92 177-307 2-93 (269)
50 PRK10703 DNA-binding transcrip 89.4 27 0.00059 35.6 18.9 69 175-277 60-128 (341)
51 cd06321 PBP1_ABC_sugar_binding 88.7 25 0.00054 34.3 17.0 125 176-345 1-128 (271)
52 PRK03378 ppnK inorganic polyph 88.5 0.83 1.8E-05 47.6 5.8 109 175-330 6-116 (292)
53 PRK13054 lipid kinase; Reviewe 88.4 2.7 5.9E-05 43.2 9.5 89 250-349 42-131 (300)
54 PRK02231 ppnK inorganic polyph 88.2 0.83 1.8E-05 47.2 5.5 52 264-330 42-95 (272)
55 PLN02935 Bifunctional NADH kin 87.8 0.79 1.7E-05 51.1 5.3 53 264-331 262-316 (508)
56 PRK13337 putative lipid kinase 87.7 2.6 5.6E-05 43.5 8.8 88 250-350 43-131 (304)
57 cd01538 PBP1_ABC_xylose_bindin 87.3 33 0.00072 34.2 21.5 86 176-299 1-86 (288)
58 PRK11914 diacylglycerol kinase 87.3 1.6 3.6E-05 44.9 7.1 70 251-328 51-121 (306)
59 PRK01231 ppnK inorganic polyph 86.5 1.1 2.4E-05 46.7 5.3 113 172-331 2-116 (295)
60 cd06297 PBP1_LacI_like_12 Liga 85.6 38 0.00083 33.2 20.3 82 177-299 2-84 (269)
61 PRK13055 putative lipid kinase 85.4 2.5 5.4E-05 44.4 7.3 75 246-327 41-117 (334)
62 cd06317 PBP1_ABC_sugar_binding 84.4 41 0.0009 32.6 19.3 84 177-299 2-87 (275)
63 PRK02155 ppnK NAD(+)/NADH kina 84.4 2 4.3E-05 44.7 6.0 110 175-331 6-117 (291)
64 cd06299 PBP1_LacI_like_13 Liga 83.7 43 0.00094 32.3 19.6 83 177-299 2-84 (265)
65 PRK03708 ppnK inorganic polyph 83.7 0.82 1.8E-05 47.2 2.8 43 263-321 56-98 (277)
66 PRK02645 ppnK inorganic polyph 83.5 1.4 3E-05 46.1 4.4 54 264-331 57-113 (305)
67 TIGR00288 conserved hypothetic 83.4 11 0.00024 36.2 10.1 109 174-302 22-140 (160)
68 TIGR03702 lip_kinase_YegS lipi 83.1 5.2 0.00011 41.1 8.4 76 246-326 34-110 (293)
69 cd08189 Fe-ADH5 Iron-containin 83.0 12 0.00026 39.9 11.3 52 252-303 71-136 (374)
70 PRK14076 pnk inorganic polypho 83.0 1.8 4E-05 48.9 5.5 53 264-331 348-402 (569)
71 PLN02727 NAD kinase 82.7 1.7 3.8E-05 51.6 5.2 122 169-331 673-797 (986)
72 PRK15408 autoinducer 2-binding 82.7 67 0.0015 33.7 17.8 181 173-396 22-209 (336)
73 PRK13059 putative lipid kinase 82.5 4.5 9.7E-05 41.7 7.7 63 260-328 52-114 (295)
74 COG1609 PurR Transcriptional r 81.4 64 0.0014 33.8 15.9 173 176-403 60-246 (333)
75 cd06305 PBP1_methylthioribose_ 81.1 55 0.0012 31.7 23.8 126 176-345 1-127 (273)
76 PRK09860 putative alcohol dehy 80.8 14 0.00031 39.6 11.0 105 192-303 18-140 (383)
77 PRK01185 ppnK inorganic polyph 80.8 2.8 6E-05 43.3 5.4 51 264-332 52-104 (271)
78 PRK00861 putative lipid kinase 80.8 3.3 7.1E-05 42.6 5.9 73 248-328 41-113 (300)
79 TIGR02638 lactal_redase lactal 80.4 14 0.00031 39.4 10.8 52 252-303 74-140 (379)
80 COG0061 nadF NAD kinase [Coenz 80.1 3.4 7.4E-05 42.7 5.8 53 263-330 54-108 (281)
81 PRK10423 transcriptional repre 79.8 71 0.0015 32.1 19.9 68 175-276 57-124 (327)
82 PRK10624 L-1,2-propanediol oxi 79.5 16 0.00035 39.1 10.9 105 192-303 17-141 (382)
83 cd08194 Fe-ADH6 Iron-containin 79.1 19 0.00041 38.4 11.3 52 252-303 68-132 (375)
84 PF00781 DAGK_cat: Diacylglyce 79.0 2.2 4.8E-05 38.3 3.5 65 252-322 41-108 (130)
85 PRK13057 putative lipid kinase 78.9 5.4 0.00012 40.8 6.8 69 251-328 38-106 (287)
86 cd06302 PBP1_LsrB_Quorum_Sensi 78.0 80 0.0017 31.7 15.4 86 176-299 1-87 (298)
87 cd06273 PBP1_GntR_like_1 This 77.6 71 0.0015 30.9 15.8 40 254-299 45-84 (268)
88 cd08551 Fe-ADH iron-containing 77.5 23 0.0005 37.6 11.2 55 252-306 68-135 (370)
89 cd01542 PBP1_TreR_like Ligand- 77.1 68 0.0015 30.8 13.6 83 177-299 2-84 (259)
90 PLN02958 diacylglycerol kinase 77.0 7.2 0.00016 43.4 7.5 114 206-327 112-234 (481)
91 PF00465 Fe-ADH: Iron-containi 76.3 5.4 0.00012 42.2 6.1 55 252-306 66-134 (366)
92 PRK15454 ethanol dehydrogenase 76.3 27 0.00058 37.8 11.5 104 192-302 36-157 (395)
93 cd08193 HVD 5-hydroxyvalerate 75.3 29 0.00063 37.0 11.3 52 252-303 71-135 (376)
94 cd01536 PBP1_ABC_sugar_binding 74.8 80 0.0017 30.1 19.7 86 176-299 1-86 (267)
95 PRK14987 gluconate operon tran 74.7 1E+02 0.0022 31.3 21.1 85 175-299 64-148 (331)
96 PF00289 CPSase_L_chain: Carba 74.5 3.2 6.9E-05 37.2 3.2 102 176-299 4-105 (110)
97 cd01575 PBP1_GntR Ligand-bindi 74.5 84 0.0018 30.2 20.9 83 177-299 2-84 (268)
98 cd01539 PBP1_GGBP Periplasmic 73.5 1.1E+02 0.0023 31.0 20.1 42 254-299 47-88 (303)
99 cd08195 DHQS Dehydroquinate sy 73.4 4.2 9.2E-05 42.9 4.4 64 252-321 70-136 (345)
100 TIGR03822 AblA_like_2 lysine-2 73.2 1.2E+02 0.0027 31.8 15.2 161 178-350 139-310 (321)
101 cd08180 PDD 1,3-propanediol de 73.1 7.6 0.00017 40.7 6.2 52 252-303 66-119 (332)
102 cd06283 PBP1_RegR_EndR_KdgR_li 72.9 91 0.002 29.9 19.4 120 177-344 2-122 (267)
103 cd06313 PBP1_ABC_sugar_binding 72.6 1E+02 0.0022 30.4 16.5 133 254-403 45-192 (272)
104 cd08176 LPO Lactadehyde:propan 72.4 38 0.00081 36.2 11.3 52 252-303 73-137 (377)
105 cd06293 PBP1_LacI_like_11 Liga 71.7 1E+02 0.0022 29.9 19.7 134 177-358 2-143 (269)
106 PRK10355 xylF D-xylose transpo 71.7 56 0.0012 33.9 12.2 95 172-304 23-117 (330)
107 COG1597 LCB5 Sphingosine kinas 71.7 12 0.00026 39.1 7.1 70 252-329 46-117 (301)
108 PRK12361 hypothetical protein; 71.5 7.7 0.00017 43.5 6.1 70 250-327 283-356 (547)
109 PRK00002 aroB 3-dehydroquinate 70.9 6.2 0.00013 41.9 5.0 63 252-320 77-142 (358)
110 cd08190 HOT Hydroxyacid-oxoaci 70.8 38 0.00083 36.8 11.1 51 252-302 68-137 (414)
111 PRK13951 bifunctional shikimat 70.5 5 0.00011 44.8 4.3 133 179-322 140-289 (488)
112 cd06304 PBP1_BmpA_like Peripla 70.4 1.1E+02 0.0024 29.9 20.0 64 176-274 1-66 (260)
113 cd08199 EEVS 2-epi-5-epi-valio 69.8 6.1 0.00013 42.1 4.6 65 252-322 72-140 (354)
114 COG1454 EutG Alcohol dehydroge 69.8 34 0.00074 37.2 10.3 51 252-302 74-137 (377)
115 cd08196 DHQS-like1 Dehydroquin 69.6 7 0.00015 41.6 5.0 65 252-322 61-128 (346)
116 PRK10401 DNA-binding transcrip 69.3 1.4E+02 0.003 30.6 20.2 65 175-274 60-125 (346)
117 TIGR00147 lipid kinase, YegS/R 69.3 15 0.00032 37.4 7.2 49 255-308 48-98 (293)
118 TIGR01481 ccpA catabolite cont 69.0 1.3E+02 0.0029 30.2 20.6 85 175-299 60-144 (329)
119 cd08188 Fe-ADH4 Iron-containin 68.5 44 0.00096 35.7 10.8 51 253-303 74-137 (377)
120 cd08192 Fe-ADH7 Iron-containin 68.4 54 0.0012 34.8 11.4 52 252-303 69-137 (370)
121 TIGR01357 aroB 3-dehydroquinat 67.7 11 0.00023 39.7 5.9 49 252-303 66-117 (344)
122 TIGR02417 fruct_sucro_rep D-fr 66.5 1.5E+02 0.0033 29.9 19.0 67 175-275 61-127 (327)
123 cd08173 Gro1PDH Sn-glycerol-1- 66.5 13 0.00029 39.0 6.3 51 252-307 66-116 (339)
124 cd06292 PBP1_LacI_like_10 Liga 66.3 1.3E+02 0.0029 29.1 13.3 126 177-345 2-129 (273)
125 PRK15395 methyl-galactoside AB 66.2 1.7E+02 0.0036 30.3 20.9 93 170-300 20-113 (330)
126 TIGR00238 KamA family protein. 65.6 87 0.0019 33.2 12.2 158 178-348 162-331 (331)
127 cd06318 PBP1_ABC_sugar_binding 65.1 1.4E+02 0.0031 29.1 19.6 42 254-299 45-86 (282)
128 cd08177 MAR Maleylacetate redu 64.8 13 0.00029 39.0 5.9 48 252-304 65-112 (337)
129 cd08186 Fe-ADH8 Iron-containin 64.7 15 0.00032 39.4 6.3 51 252-302 72-136 (383)
130 PRK00843 egsA NAD(P)-dependent 64.4 14 0.00031 39.0 6.1 50 252-306 75-124 (350)
131 KOG4180 Predicted kinase [Gene 64.3 5.6 0.00012 42.4 2.9 66 228-299 47-135 (395)
132 PLN02834 3-dehydroquinate synt 63.5 7.9 0.00017 42.6 4.1 64 252-321 148-214 (433)
133 cd08172 GlyDH-like1 Glycerol d 63.4 13 0.00027 39.3 5.4 50 252-306 64-113 (347)
134 cd07766 DHQ_Fe-ADH Dehydroquin 63.2 14 0.0003 38.4 5.7 52 252-306 66-117 (332)
135 cd06298 PBP1_CcpA_like Ligand- 63.1 1.5E+02 0.0032 28.6 15.9 76 254-345 45-123 (268)
136 cd08170 GlyDH Glycerol dehydro 63.0 15 0.00032 38.8 5.8 47 252-303 65-111 (351)
137 cd06354 PBP1_BmpA_PnrA_like Pe 62.6 1.6E+02 0.0036 29.0 14.9 64 176-274 1-67 (265)
138 cd08178 AAD_C C-terminal alcoh 62.0 17 0.00037 39.1 6.3 33 252-284 66-98 (398)
139 cd08179 NADPH_BDH NADPH-depend 61.9 17 0.00037 38.8 6.2 52 252-303 69-136 (375)
140 cd06326 PBP1_STKc_like Type I 61.4 73 0.0016 32.2 10.4 104 186-299 117-223 (336)
141 cd01540 PBP1_arabinose_binding 61.3 1.7E+02 0.0037 28.7 18.0 85 176-299 1-85 (289)
142 cd08197 DOIS 2-deoxy-scyllo-in 61.3 14 0.0003 39.5 5.3 63 252-320 69-134 (355)
143 PRK06186 hypothetical protein; 61.1 13 0.00027 37.8 4.7 57 264-336 53-111 (229)
144 cd06285 PBP1_LacI_like_7 Ligan 60.4 1.7E+02 0.0036 28.3 18.8 85 177-301 2-86 (265)
145 PRK15138 aldehyde reductase; P 59.0 21 0.00046 38.5 6.3 51 252-302 73-139 (387)
146 cd07037 TPP_PYR_MenD Pyrimidin 58.9 1.4E+02 0.003 28.4 11.2 95 195-307 2-100 (162)
147 cd07995 TPK Thiamine pyrophosp 58.9 35 0.00077 33.4 7.4 93 178-276 1-102 (208)
148 cd08182 HEPD Hydroxyethylphosp 58.6 21 0.00046 37.9 6.1 52 252-303 65-133 (367)
149 PRK09423 gldA glycerol dehydro 58.2 22 0.00048 37.8 6.2 50 252-306 72-121 (366)
150 cd02072 Glm_B12_BD B12 binding 58.0 1.2E+02 0.0025 28.2 10.1 83 177-275 2-90 (128)
151 cd08185 Fe-ADH1 Iron-containin 57.6 20 0.00043 38.3 5.8 52 252-303 71-140 (380)
152 cd06278 PBP1_LacI_like_2 Ligan 57.5 1.8E+02 0.0039 27.8 16.1 82 177-299 2-83 (266)
153 cd08181 PPD-like 1,3-propanedi 57.2 24 0.00053 37.4 6.3 52 252-303 71-134 (357)
154 cd06288 PBP1_sucrose_transcrip 57.2 1.9E+02 0.004 27.9 18.2 65 177-275 2-67 (269)
155 cd08171 GlyDH-like2 Glycerol d 56.8 20 0.00044 37.8 5.6 47 252-303 66-112 (345)
156 cd06274 PBP1_FruR Ligand bindi 56.6 1.9E+02 0.0042 27.9 19.3 83 177-299 2-84 (264)
157 cd08550 GlyDH-like Glycerol_de 56.4 23 0.0005 37.4 6.0 51 252-307 65-115 (349)
158 cd06307 PBP1_uncharacterized_s 56.2 2E+02 0.0044 28.0 15.8 88 176-299 1-89 (275)
159 cd08198 DHQS-like2 Dehydroquin 55.7 21 0.00045 38.6 5.5 64 253-322 85-151 (369)
160 PRK05637 anthranilate synthase 55.5 24 0.00052 34.9 5.6 52 258-322 38-89 (208)
161 cd06270 PBP1_GalS_like Ligand 55.4 2E+02 0.0044 27.8 20.1 86 177-303 2-88 (268)
162 cd06346 PBP1_ABC_ligand_bindin 55.2 80 0.0017 31.9 9.5 102 187-298 119-223 (312)
163 cd06315 PBP1_ABC_sugar_binding 55.1 1.1E+02 0.0023 30.4 10.2 66 176-275 2-67 (280)
164 cd06310 PBP1_ABC_sugar_binding 54.8 2.1E+02 0.0045 27.7 22.2 88 176-299 1-88 (273)
165 PRK05261 putative phosphoketol 54.7 2E+02 0.0044 34.3 13.7 64 157-220 26-91 (785)
166 cd08184 Fe-ADH3 Iron-containin 54.7 30 0.00064 36.9 6.5 51 253-303 67-133 (347)
167 cd06290 PBP1_LacI_like_9 Ligan 54.6 2.1E+02 0.0045 27.6 18.3 65 177-276 2-67 (265)
168 TIGR00732 dprA DNA protecting 52.8 1E+02 0.0022 30.9 9.5 101 184-305 80-193 (220)
169 TIGR01504 glyox_carbo_lig glyo 52.5 2.4E+02 0.0053 32.1 13.6 186 194-406 7-214 (588)
170 cd06316 PBP1_ABC_sugar_binding 52.4 2.5E+02 0.0054 27.9 21.6 86 176-299 1-87 (294)
171 PRK05670 anthranilate synthase 52.3 24 0.00051 33.9 4.9 49 260-321 39-87 (189)
172 cd08183 Fe-ADH2 Iron-containin 52.2 29 0.00062 37.0 5.9 51 252-302 63-130 (374)
173 cd06296 PBP1_CatR_like Ligand- 51.8 2.3E+02 0.005 27.3 20.0 85 177-301 2-86 (270)
174 cd01972 Nitrogenase_VnfE_like 51.6 2E+02 0.0044 31.3 12.4 155 254-445 79-239 (426)
175 PF04263 TPK_catalytic: Thiami 51.3 1.6E+02 0.0035 26.8 9.9 69 207-276 18-96 (123)
176 cd08191 HHD 6-hydroxyhexanoate 51.2 34 0.00074 36.7 6.3 50 253-302 68-130 (386)
177 cd06349 PBP1_ABC_ligand_bindin 51.1 76 0.0017 32.3 8.6 103 186-298 115-221 (340)
178 KOG1184 Thiamine pyrophosphate 50.6 94 0.002 35.3 9.6 106 194-315 8-118 (561)
179 cd07039 TPP_PYR_POX Pyrimidine 50.0 2.3E+02 0.0049 26.7 13.6 97 194-308 4-104 (164)
180 PRK09492 treR trehalose repres 49.5 2.8E+02 0.0061 27.7 19.9 65 175-273 63-127 (315)
181 cd08187 BDH Butanol dehydrogen 49.5 36 0.00079 36.4 6.2 52 252-303 74-138 (382)
182 cd06295 PBP1_CelR Ligand bindi 49.4 1.7E+02 0.0037 28.4 10.5 42 254-301 54-95 (275)
183 TIGR03405 Phn_Fe-ADH phosphona 49.3 38 0.00081 36.0 6.2 51 252-302 66-135 (355)
184 cd06338 PBP1_ABC_ligand_bindin 49.3 1.4E+02 0.0031 30.2 10.3 103 187-299 121-228 (345)
185 smart00046 DAGKc Diacylglycero 49.2 20 0.00043 32.2 3.6 52 264-321 49-103 (124)
186 cd03822 GT1_ecORF704_like This 48.8 1.6E+02 0.0034 29.2 10.3 84 176-274 1-86 (366)
187 TIGR03134 malonate_gamma malon 48.7 83 0.0018 32.1 8.3 98 270-387 44-153 (238)
188 TIGR00566 trpG_papA glutamine 48.5 28 0.0006 33.6 4.7 52 258-322 37-88 (188)
189 cd06335 PBP1_ABC_ligand_bindin 48.3 1.4E+02 0.003 30.8 10.1 97 192-298 124-224 (347)
190 cd06329 PBP1_SBP_like_3 Peripl 48.0 1.1E+02 0.0024 31.4 9.3 103 187-299 124-233 (342)
191 PRK10586 putative oxidoreducta 47.9 29 0.00064 37.1 5.2 53 253-311 76-128 (362)
192 cd06167 LabA_like LabA_like pr 47.8 34 0.00074 30.9 5.0 43 255-300 90-132 (149)
193 cd08175 G1PDH Glycerol-1-phosp 47.4 32 0.0007 36.2 5.4 44 253-302 70-113 (348)
194 cd06268 PBP1_ABC_transporter_L 47.4 1.6E+02 0.0034 28.2 9.8 104 186-299 115-222 (298)
195 COG0206 FtsZ Cell division GTP 47.1 39 0.00085 36.2 5.9 208 173-406 10-232 (338)
196 PRK06203 aroB 3-dehydroquinate 46.7 40 0.00088 36.5 6.0 64 253-322 97-163 (389)
197 cd04509 PBP1_ABC_transporter_G 46.6 1.6E+02 0.0035 28.2 9.7 103 187-299 118-225 (299)
198 PRK04011 peptide chain release 46.5 1.2E+02 0.0025 33.4 9.6 107 253-373 198-321 (411)
199 PRK14021 bifunctional shikimat 46.5 23 0.00049 40.1 4.2 64 253-322 255-321 (542)
200 cd01977 Nitrogenase_VFe_alpha 46.2 3.1E+02 0.0067 29.7 12.7 151 256-445 79-235 (415)
201 PRK05858 hypothetical protein; 46.1 4.7E+02 0.01 29.3 14.7 136 194-347 9-162 (542)
202 cd08169 DHQ-like Dehydroquinat 46.0 32 0.00068 36.6 5.0 64 252-321 68-134 (344)
203 cd06333 PBP1_ABC-type_HAAT_lik 45.9 1.1E+02 0.0024 30.7 8.8 104 187-300 115-221 (312)
204 cd08174 G1PDH-like Glycerol-1- 45.6 55 0.0012 34.2 6.7 53 251-308 61-114 (331)
205 PF07755 DUF1611: Protein of u 45.5 34 0.00073 36.2 5.0 179 169-369 30-219 (301)
206 PF01761 DHQ_synthase: 3-dehyd 45.3 10 0.00022 39.0 1.2 65 252-322 14-81 (260)
207 cd07035 TPP_PYR_POX_like Pyrim 45.1 2.4E+02 0.0052 25.6 12.8 95 195-306 2-98 (155)
208 cd01391 Periplasmic_Binding_Pr 44.9 2.5E+02 0.0055 25.9 17.4 83 252-345 46-131 (269)
209 COG2910 Putative NADH-flavin r 44.7 1.3E+02 0.0028 30.2 8.5 94 175-279 1-111 (211)
210 TIGR01284 alt_nitrog_alph nitr 44.3 4.4E+02 0.0096 29.2 13.7 147 256-445 116-272 (457)
211 cd06323 PBP1_ribose_binding Pe 44.3 2.9E+02 0.0064 26.4 20.8 85 177-299 2-86 (268)
212 COG1122 CbiO ABC-type cobalt t 44.3 69 0.0015 32.4 6.9 101 301-404 95-198 (235)
213 cd06337 PBP1_ABC_ligand_bindin 44.2 1.5E+02 0.0033 30.7 9.7 102 189-299 128-235 (357)
214 cd06294 PBP1_ycjW_transcriptio 44.1 3E+02 0.0065 26.4 15.4 40 254-299 50-89 (270)
215 cd08549 G1PDH_related Glycerol 43.7 49 0.0011 34.8 6.0 48 253-306 70-117 (332)
216 cd04234 AAK_AK AAK_AK: Amino A 43.5 2.6E+02 0.0057 27.7 10.8 35 237-274 4-40 (227)
217 PRK07524 hypothetical protein; 43.2 5.1E+02 0.011 28.9 20.2 188 192-405 4-212 (535)
218 PRK09330 cell division protein 43.1 3.1E+02 0.0067 30.0 12.0 133 252-407 87-236 (384)
219 PRK06725 acetolactate synthase 43.0 3.4E+02 0.0073 30.8 12.9 185 193-406 18-226 (570)
220 cd06360 PBP1_alkylbenzenes_lik 43.0 1.8E+02 0.0039 29.3 9.8 98 191-298 120-222 (336)
221 PRK08762 molybdopterin biosynt 43.0 1.9E+02 0.0042 30.9 10.5 28 196-223 73-100 (376)
222 PRK03692 putative UDP-N-acetyl 42.7 88 0.0019 31.9 7.4 84 175-273 106-191 (243)
223 TIGR00640 acid_CoA_mut_C methy 42.6 2.4E+02 0.0051 26.0 9.6 118 174-329 2-125 (132)
224 smart00481 POLIIIAc DNA polyme 41.8 89 0.0019 24.6 5.9 51 251-303 15-65 (67)
225 cd06279 PBP1_LacI_like_3 Ligan 41.5 3.6E+02 0.0077 26.6 19.8 70 186-299 16-85 (283)
226 TIGR03586 PseI pseudaminic aci 40.8 3.8E+02 0.0082 28.7 12.0 146 194-378 80-226 (327)
227 PLN02335 anthranilate synthase 40.6 30 0.00065 34.5 3.6 47 260-319 58-104 (222)
228 PF01936 NYN: NYN domain; Int 40.6 25 0.00054 31.3 2.8 46 255-303 86-131 (146)
229 cd06339 PBP1_YraM_LppC_lipopro 40.5 94 0.002 32.1 7.4 103 188-299 107-236 (336)
230 PF02645 DegV: Uncharacterised 40.5 85 0.0018 32.1 7.0 145 201-361 18-183 (280)
231 COG0371 GldA Glycerol dehydrog 40.5 45 0.00097 36.1 5.1 54 251-309 71-124 (360)
232 PRK12815 carB carbamoyl phosph 40.4 1.1E+02 0.0025 37.5 9.1 106 174-300 7-119 (1068)
233 PRK06154 hypothetical protein; 40.3 4.5E+02 0.0098 29.8 13.3 185 193-406 23-226 (565)
234 CHL00101 trpG anthranilate syn 40.3 45 0.00098 32.1 4.7 49 260-321 39-87 (190)
235 cd00537 MTHFR Methylenetetrahy 39.8 80 0.0017 32.1 6.7 87 208-300 31-137 (274)
236 TIGR01752 flav_long flavodoxin 39.7 91 0.002 29.3 6.6 39 172-211 76-117 (167)
237 cd06287 PBP1_LacI_like_8 Ligan 39.6 3.9E+02 0.0084 26.4 15.5 25 182-206 13-39 (269)
238 PRK08527 acetolactate synthase 39.4 5.2E+02 0.011 29.1 13.6 137 193-347 6-161 (563)
239 KOG1615 Phosphoserine phosphat 39.3 47 0.001 33.4 4.7 84 185-273 89-181 (227)
240 COG2515 Acd 1-aminocyclopropan 39.1 2.3E+02 0.005 30.3 9.9 119 178-304 66-218 (323)
241 PRK12446 undecaprenyldiphospho 38.9 2.5E+02 0.0055 29.7 10.5 97 267-365 4-116 (352)
242 PRK07418 acetolactate synthase 38.8 3.6E+02 0.0078 30.8 12.3 139 194-347 23-180 (616)
243 PF05036 SPOR: Sporulation rel 38.6 41 0.00088 26.4 3.5 50 244-293 9-71 (76)
244 cd07944 DRE_TIM_HOA_like 4-hyd 38.6 4.5E+02 0.0097 26.9 13.5 147 183-348 9-162 (266)
245 COG5561 Predicted metal-bindin 38.1 43 0.00092 29.6 3.6 24 175-201 28-52 (101)
246 cd01968 Nitrogenase_NifE_I Nit 37.9 4.1E+02 0.0089 28.7 12.1 153 253-446 75-232 (410)
247 PRK01372 ddl D-alanine--D-alan 37.5 95 0.0021 31.5 6.8 36 174-211 4-42 (304)
248 cd01545 PBP1_SalR Ligand-bindi 37.0 3.9E+02 0.0084 25.7 19.2 46 253-303 45-90 (270)
249 COG0504 PyrG CTP synthase (UTP 36.7 53 0.0011 37.0 5.0 83 265-363 344-432 (533)
250 PRK15404 leucine ABC transport 36.6 2.6E+02 0.0057 29.4 10.2 96 194-299 149-248 (369)
251 PF04392 ABC_sub_bind: ABC tra 36.4 79 0.0017 32.2 6.1 77 176-282 1-77 (294)
252 PRK07092 benzoylformate decarb 36.4 5.9E+02 0.013 28.4 13.4 185 193-406 15-218 (530)
253 COG3367 Uncharacterized conser 36.2 1.3E+02 0.0028 32.3 7.6 177 173-370 69-256 (339)
254 cd06312 PBP1_ABC_sugar_binding 35.7 3.7E+02 0.008 26.1 10.5 86 176-299 1-88 (271)
255 TIGR01162 purE phosphoribosyla 35.4 55 0.0012 31.5 4.3 50 247-303 36-86 (156)
256 cd06347 PBP1_ABC_ligand_bindin 35.3 2.5E+02 0.0055 28.1 9.4 61 236-299 160-223 (334)
257 PRK06048 acetolactate synthase 35.1 7E+02 0.015 28.1 14.5 189 193-406 11-219 (561)
258 PRK07282 acetolactate synthase 35.1 7.1E+02 0.015 28.1 13.9 185 193-406 13-222 (566)
259 cd06275 PBP1_PurR Ligand-bindi 34.9 4.2E+02 0.0091 25.5 10.8 86 177-301 2-87 (269)
260 PRK13805 bifunctional acetalde 34.8 75 0.0016 38.0 6.3 33 252-284 527-559 (862)
261 PRK14478 nitrogenase molybdenu 34.6 6.5E+02 0.014 28.0 13.2 149 253-446 108-265 (475)
262 cd07062 Peptidase_S66_mccF_lik 34.5 91 0.002 32.5 6.2 84 176-284 2-87 (308)
263 cd01965 Nitrogenase_MoFe_beta_ 34.2 6.4E+02 0.014 27.4 14.0 151 254-445 71-247 (428)
264 KOG0066 eIF2-interacting prote 34.1 1.3E+02 0.0028 34.0 7.4 88 315-405 665-761 (807)
265 cd06342 PBP1_ABC_LIVBP_like Ty 34.1 2.7E+02 0.0059 27.9 9.4 101 187-298 116-221 (334)
266 KOG4435 Predicted lipid kinase 34.0 53 0.0012 36.2 4.4 60 242-305 96-155 (535)
267 PF07355 GRDB: Glycine/sarcosi 34.0 35 0.00076 36.8 3.0 98 171-271 224-347 (349)
268 COG1168 MalY Bifunctional PLP- 33.7 5.7E+02 0.012 28.2 12.0 165 179-363 86-282 (388)
269 cd06271 PBP1_AglR_RafR_like Li 33.7 4.3E+02 0.0093 25.2 13.3 38 256-299 51-88 (268)
270 TIGR01501 MthylAspMutase methy 33.6 2.4E+02 0.0052 26.3 8.1 120 176-329 3-130 (134)
271 cd06319 PBP1_ABC_sugar_binding 33.5 4.5E+02 0.0097 25.4 18.6 30 176-205 1-30 (277)
272 cd06366 PBP1_GABAb_receptor Li 33.5 3E+02 0.0065 28.1 9.8 97 187-293 117-218 (350)
273 TIGR02826 RNR_activ_nrdG3 anae 33.2 98 0.0021 29.0 5.6 44 252-296 47-93 (147)
274 PRK06965 acetolactate synthase 33.2 7.4E+02 0.016 28.1 13.6 191 193-406 24-233 (587)
275 TIGR01133 murG undecaprenyldip 33.0 5.3E+02 0.011 26.0 12.5 37 266-302 2-39 (348)
276 PRK07789 acetolactate synthase 32.8 7.9E+02 0.017 28.0 14.6 190 194-406 35-243 (612)
277 PF13727 CoA_binding_3: CoA-bi 32.7 75 0.0016 28.8 4.7 45 252-296 129-173 (175)
278 PRK05294 carB carbamoyl phosph 32.6 2.3E+02 0.005 34.8 10.0 107 174-305 554-666 (1066)
279 PLN02204 diacylglycerol kinase 32.6 66 0.0014 37.1 5.1 51 230-281 179-235 (601)
280 cd06291 PBP1_Qymf_like Ligand 32.6 4E+02 0.0087 25.6 10.1 86 177-305 2-87 (265)
281 TIGR02405 trehalos_R_Ecol treh 32.5 5.3E+02 0.011 25.9 21.6 65 176-274 61-125 (311)
282 cd03409 Chelatase_Class_II Cla 32.4 3E+02 0.0064 23.0 8.7 77 177-287 2-87 (101)
283 cd01076 NAD_bind_1_Glu_DH NAD( 32.4 1.7E+02 0.0037 29.3 7.6 117 170-305 27-162 (227)
284 cd02991 UAS_ETEA UAS family, E 32.3 79 0.0017 28.4 4.6 68 253-326 42-109 (116)
285 PRK06276 acetolactate synthase 31.9 8E+02 0.017 27.8 13.7 185 194-406 5-215 (586)
286 cd06327 PBP1_SBP_like_1 Peripl 31.8 3.3E+02 0.0072 27.7 9.7 95 188-292 118-215 (334)
287 PLN02735 carbamoyl-phosphate s 31.6 2.2E+02 0.0047 35.4 9.5 108 173-299 573-692 (1102)
288 TIGR01378 thi_PPkinase thiamin 31.2 1.4E+02 0.003 29.4 6.5 70 207-276 20-98 (203)
289 cd06343 PBP1_ABC_ligand_bindin 30.8 3.6E+02 0.0077 27.7 9.9 102 186-297 124-229 (362)
290 PRK08978 acetolactate synthase 30.6 3.1E+02 0.0068 30.6 10.0 186 193-406 4-208 (548)
291 PRK10727 DNA-binding transcrip 30.6 5.9E+02 0.013 25.9 19.5 66 175-274 60-125 (343)
292 PF13458 Peripla_BP_6: Peripla 30.4 4.1E+02 0.0089 26.6 10.1 100 185-294 114-217 (343)
293 COG3961 Pyruvate decarboxylase 30.3 3.3E+02 0.0072 31.2 9.8 108 193-315 7-118 (557)
294 cd00316 Oxidoreductase_nitroge 30.0 4.9E+02 0.011 27.4 10.9 154 252-445 68-226 (399)
295 PF01994 Trm56: tRNA ribose 2' 29.9 64 0.0014 29.7 3.6 67 228-300 11-78 (120)
296 PF00581 Rhodanese: Rhodanese- 29.8 86 0.0019 26.1 4.3 44 174-219 67-111 (113)
297 cd06306 PBP1_TorT-like TorT-li 29.7 5.4E+02 0.012 25.1 16.1 84 176-299 1-87 (268)
298 TIGR01285 nifN nitrogenase mol 29.5 5.6E+02 0.012 28.1 11.5 72 367-445 170-259 (432)
299 cd06289 PBP1_MalI_like Ligand- 29.5 5.1E+02 0.011 24.7 19.2 41 254-299 45-85 (268)
300 PRK13210 putative L-xylulose 5 29.2 3.2E+02 0.007 27.2 9.0 49 252-300 17-74 (284)
301 CHL00099 ilvB acetohydroxyacid 29.2 7.6E+02 0.017 28.0 12.9 137 193-347 13-171 (585)
302 cd02202 FtsZ_type2 FtsZ is a G 29.2 3.9E+02 0.0084 28.6 10.0 48 253-301 83-139 (349)
303 cd06348 PBP1_ABC_ligand_bindin 29.1 3.4E+02 0.0075 27.6 9.4 61 234-297 159-222 (344)
304 PRK07525 sulfoacetaldehyde ace 28.8 9E+02 0.02 27.4 13.6 185 194-406 10-212 (588)
305 PRK04155 chaperone protein Hch 28.7 6.5E+02 0.014 26.3 11.3 41 252-292 133-181 (287)
306 cd06334 PBP1_ABC_ligand_bindin 28.7 6E+02 0.013 26.5 11.2 103 186-298 116-226 (351)
307 TIGR02637 RhaS rhamnose ABC tr 28.5 6E+02 0.013 25.3 16.6 86 177-299 1-87 (302)
308 COG0052 RpsB Ribosomal protein 28.2 1.4E+02 0.0031 30.9 6.1 54 265-325 157-211 (252)
309 TIGR00108 eRF peptide chain re 28.2 5.1E+02 0.011 28.5 10.8 107 253-373 194-317 (409)
310 KOG1251 Serine racemase [Signa 28.2 1.2E+02 0.0026 31.8 5.5 55 231-285 110-195 (323)
311 cd01743 GATase1_Anthranilate_S 28.1 70 0.0015 30.3 3.8 44 263-322 41-87 (184)
312 PF04405 ScdA_N: Domain of Unk 28.1 61 0.0013 25.8 2.8 26 254-281 13-38 (56)
313 PRK06774 para-aminobenzoate sy 28.0 57 0.0012 31.3 3.2 49 258-319 37-85 (191)
314 PRK09259 putative oxalyl-CoA d 27.9 5.6E+02 0.012 28.9 11.5 192 193-406 13-225 (569)
315 PRK13018 cell division protein 27.8 8.3E+02 0.018 26.7 12.4 24 384-407 227-250 (378)
316 cd06284 PBP1_LacI_like_6 Ligan 27.8 5.4E+02 0.012 24.5 16.8 83 177-301 2-85 (267)
317 PF00731 AIRC: AIR carboxylase 27.7 47 0.001 31.7 2.5 48 248-302 39-87 (150)
318 PF04122 CW_binding_2: Putativ 27.2 80 0.0017 26.6 3.6 38 239-278 49-86 (92)
319 COG3867 Arabinogalactan endo-1 27.0 1.8E+02 0.0039 31.3 6.7 62 229-293 44-119 (403)
320 PF00117 GATase: Glutamine ami 26.8 1.9E+02 0.0042 27.2 6.5 49 261-324 39-90 (192)
321 cd06314 PBP1_tmGBP Periplasmic 26.6 6E+02 0.013 24.6 21.6 84 176-299 1-85 (271)
322 cd06341 PBP1_ABC_ligand_bindin 26.6 3.3E+02 0.0072 27.6 8.7 98 192-298 119-219 (341)
323 PRK10247 putative ABC transpor 26.5 1.2E+02 0.0026 29.7 5.2 60 344-404 136-197 (225)
324 COG0657 Aes Esterase/lipase [L 26.5 2.6E+02 0.0056 28.5 7.8 49 315-363 125-174 (312)
325 TIGR02955 TMAO_TorT TMAO reduc 26.4 6.6E+02 0.014 25.1 16.8 22 254-275 47-68 (295)
326 cd06533 Glyco_transf_WecG_TagA 26.4 3.5E+02 0.0076 25.7 8.2 86 174-273 46-133 (171)
327 cd06345 PBP1_ABC_ligand_bindin 26.4 4.9E+02 0.011 26.5 9.9 62 234-298 166-230 (344)
328 PRK03359 putative electron tra 26.3 2.1E+02 0.0046 29.5 7.1 67 241-308 55-128 (256)
329 PRK11629 lolD lipoprotein tran 26.1 1.2E+02 0.0026 29.7 5.1 58 346-404 146-205 (233)
330 PRK13111 trpA tryptophan synth 25.9 3.3E+02 0.0071 28.0 8.4 49 252-302 105-153 (258)
331 cd01391 Periplasmic_Binding_Pr 25.9 5.2E+02 0.011 23.7 9.7 44 252-299 169-216 (269)
332 PF02481 DNA_processg_A: DNA r 25.8 1.2E+02 0.0027 30.0 5.2 109 178-307 74-195 (212)
333 PF02633 Creatininase: Creatin 25.7 1.6E+02 0.0035 29.3 6.0 47 253-299 88-135 (237)
334 cd01744 GATase1_CPSase Small c 25.7 1.4E+02 0.0029 28.4 5.3 48 261-323 36-86 (178)
335 PF00782 DSPc: Dual specificit 25.7 3.5E+02 0.0076 23.6 7.7 79 257-354 11-89 (133)
336 PRK00311 panB 3-methyl-2-oxobu 25.5 3.7E+02 0.008 27.9 8.7 123 183-317 86-230 (264)
337 PRK08007 para-aminobenzoate sy 25.5 80 0.0017 30.4 3.7 75 228-320 11-86 (187)
338 cd07038 TPP_PYR_PDC_IPDC_like 25.4 5.6E+02 0.012 23.9 13.7 94 195-306 2-98 (162)
339 cd06332 PBP1_aromatic_compound 25.3 5.5E+02 0.012 25.6 9.9 99 187-298 116-219 (333)
340 cd01966 Nitrogenase_NifN_1 Nit 25.3 5E+02 0.011 28.4 10.1 152 254-445 71-248 (417)
341 PRK01045 ispH 4-hydroxy-3-meth 25.2 1.4E+02 0.003 31.5 5.6 77 252-330 199-279 (298)
342 PRK06895 putative anthranilate 25.0 85 0.0018 30.1 3.8 44 264-320 43-86 (190)
343 cd07025 Peptidase_S66 LD-Carbo 24.7 2.1E+02 0.0046 29.5 6.8 82 177-284 1-83 (282)
344 cd06300 PBP1_ABC_sugar_binding 24.7 6.4E+02 0.014 24.3 16.8 89 176-302 1-94 (272)
345 cd01574 PBP1_LacI Ligand-bindi 24.7 6.2E+02 0.013 24.2 13.6 83 177-299 2-85 (264)
346 PRK11041 DNA-binding transcrip 24.6 6.9E+02 0.015 24.7 19.6 67 175-275 36-102 (309)
347 PRK12815 carB carbamoyl phosph 24.4 2.6E+02 0.0057 34.4 8.6 106 173-303 554-665 (1068)
348 TIGR00676 fadh2 5,10-methylene 24.3 1.1E+02 0.0023 31.4 4.6 56 246-301 66-135 (272)
349 cd06350 PBP1_GPCR_family_C_lik 24.3 5.8E+02 0.012 25.8 9.9 104 186-299 141-250 (348)
350 PF13685 Fe-ADH_2: Iron-contai 24.3 69 0.0015 32.8 3.1 51 252-307 63-113 (250)
351 PRK10771 thiQ thiamine transpo 24.3 1.4E+02 0.0029 29.3 5.1 61 344-405 128-190 (232)
352 PRK05294 carB carbamoyl phosph 24.3 2.8E+02 0.006 34.2 8.7 105 174-299 7-118 (1066)
353 PLN02735 carbamoyl-phosphate s 24.2 2.9E+02 0.0063 34.3 8.9 106 174-300 23-135 (1102)
354 COG2217 ZntA Cation transport 24.0 3.8E+02 0.0083 31.7 9.4 128 157-286 397-573 (713)
355 cd06379 PBP1_iGluR_NMDA_NR1 N- 24.0 8.3E+02 0.018 25.4 12.3 99 185-293 134-239 (377)
356 COG1062 AdhC Zn-dependent alco 23.9 6.7E+02 0.015 27.4 10.4 102 175-302 187-289 (366)
357 TIGR02769 nickel_nikE nickel i 23.9 1.3E+02 0.0027 30.3 4.9 61 344-405 149-211 (265)
358 KOG0022 Alcohol dehydrogenase, 23.8 4.6E+02 0.01 28.5 9.1 89 195-302 207-298 (375)
359 COG0796 MurI Glutamate racemas 23.7 1.1E+02 0.0024 31.9 4.4 42 253-299 56-97 (269)
360 PF02401 LYTB: LytB protein; 23.7 90 0.002 32.6 3.9 50 253-304 199-248 (281)
361 PRK06882 acetolactate synthase 23.5 1.1E+03 0.023 26.6 13.4 138 193-348 7-163 (574)
362 PRK05660 HemN family oxidoredu 23.3 97 0.0021 33.3 4.2 63 263-325 57-134 (378)
363 cd06282 PBP1_GntR_like_2 Ligan 23.2 6.5E+02 0.014 23.9 17.4 84 177-299 2-85 (266)
364 PRK06456 acetolactate synthase 23.1 1E+03 0.022 26.7 12.5 140 193-347 5-163 (572)
365 cd01967 Nitrogenase_MoFe_alpha 22.9 9.4E+02 0.02 25.6 12.7 151 253-446 76-234 (406)
366 TIGR00253 RNA_bind_YhbY putati 22.9 3.2E+02 0.0068 24.1 6.5 35 261-295 12-48 (95)
367 PRK08857 para-aminobenzoate sy 22.8 1.3E+02 0.0028 29.0 4.6 48 260-320 39-86 (193)
368 TIGR01862 N2-ase-Ialpha nitrog 22.8 9.9E+02 0.021 26.3 12.0 155 253-446 106-265 (443)
369 PRK12342 hypothetical protein; 22.8 3.1E+02 0.0068 28.2 7.5 69 239-308 50-125 (254)
370 TIGR03821 AblA_like_1 lysine-2 22.7 9.2E+02 0.02 25.4 12.3 157 179-350 146-316 (321)
371 cd06330 PBP1_Arsenic_SBP_like 22.7 5.5E+02 0.012 26.1 9.4 103 186-298 117-228 (346)
372 PRK13609 diacylglycerol glucos 22.6 3.1E+02 0.0067 28.6 7.7 115 173-297 3-131 (380)
373 PTZ00063 histone deacetylase; 22.5 4.2E+02 0.0091 29.6 8.9 100 185-311 225-331 (436)
374 TIGR01501 MthylAspMutase methy 22.5 3.5E+02 0.0076 25.2 7.1 42 252-293 40-82 (134)
375 cd06336 PBP1_ABC_ligand_bindin 22.4 5.2E+02 0.011 26.5 9.3 61 236-298 162-225 (347)
376 PRK11366 puuD gamma-glutamyl-g 22.3 2.4E+02 0.0051 28.7 6.6 45 228-274 27-71 (254)
377 PRK03369 murD UDP-N-acetylmura 22.2 3.1E+02 0.0068 30.4 8.0 59 250-314 362-428 (488)
378 cd02071 MM_CoA_mut_B12_BD meth 22.2 3.3E+02 0.0072 24.2 6.8 48 230-277 40-92 (122)
379 PRK10584 putative ABC transpor 22.1 1.5E+02 0.0032 28.8 4.9 58 345-403 146-205 (228)
380 PRK06466 acetolactate synthase 22.0 1.2E+03 0.025 26.4 13.9 134 194-346 8-161 (574)
381 PRK02261 methylaspartate mutas 21.9 3.2E+02 0.0068 25.3 6.8 103 173-291 2-112 (137)
382 TIGR03676 aRF1/eRF1 peptide ch 21.8 5E+02 0.011 28.5 9.3 57 315-373 251-313 (403)
383 TIGR01244 conserved hypothetic 21.6 6.1E+02 0.013 23.0 8.9 96 250-363 13-111 (135)
384 PF02601 Exonuc_VII_L: Exonucl 21.6 4.4E+02 0.0096 27.3 8.6 96 174-305 14-120 (319)
385 COG0224 AtpG F0F1-type ATP syn 21.6 3.2E+02 0.007 28.8 7.4 18 254-271 151-168 (287)
386 cd06324 PBP1_ABC_sugar_binding 21.6 8.2E+02 0.018 24.5 16.1 85 177-301 2-90 (305)
387 cd01744 GATase1_CPSase Small c 21.6 1.4E+02 0.0029 28.4 4.4 42 178-220 42-84 (178)
388 PRK07979 acetolactate synthase 21.3 1.2E+03 0.026 26.3 13.3 186 194-406 8-218 (574)
389 PRK00865 glutamate racemase; P 21.3 8.7E+02 0.019 24.6 13.0 88 253-372 56-145 (261)
390 PF07287 DUF1446: Protein of u 21.3 2.2E+02 0.0047 30.9 6.3 59 244-302 50-109 (362)
391 PRK14476 nitrogenase molybdenu 21.2 1E+03 0.023 26.3 11.8 57 384-445 184-259 (455)
392 PF13433 Peripla_BP_5: Peripla 21.2 2.6E+02 0.0056 30.5 6.8 94 182-285 112-211 (363)
393 PF07905 PucR: Purine cataboli 21.1 1.7E+02 0.0037 26.2 4.8 67 232-301 35-107 (123)
394 COG1121 ZnuC ABC-type Mn/Zn tr 21.1 2.1E+02 0.0045 29.6 5.9 108 294-406 75-200 (254)
395 TIGR01283 nifE nitrogenase mol 21.1 6.7E+02 0.014 27.6 10.2 98 184-284 130-243 (456)
396 PF01261 AP_endonuc_2: Xylose 20.9 3.5E+02 0.0076 24.9 7.0 74 257-331 1-81 (213)
397 PRK14462 ribosomal RNA large s 20.9 1.3E+02 0.0029 32.4 4.6 116 178-300 163-299 (356)
398 cd06269 PBP1_glutamate_recepto 20.9 6.3E+02 0.014 24.1 9.0 104 186-299 121-229 (298)
399 TIGR01369 CPSaseII_lrg carbamo 20.9 4.9E+02 0.011 32.1 9.9 106 174-300 6-118 (1050)
400 TIGR00111 pelota probable tran 20.7 5.6E+02 0.012 27.4 9.2 133 253-404 183-330 (351)
401 TIGR02263 benz_CoA_red_C benzo 20.7 1E+03 0.022 25.6 11.3 112 176-299 233-357 (380)
402 PRK10253 iron-enterobactin tra 20.6 1.6E+02 0.0035 29.6 4.9 61 344-405 142-204 (265)
403 COG1564 THI80 Thiamine pyropho 20.6 4E+02 0.0086 26.9 7.5 77 207-285 26-111 (212)
404 TIGR03254 oxalate_oxc oxalyl-C 20.5 1.2E+03 0.026 26.1 12.3 190 194-406 7-218 (554)
405 cd06276 PBP1_FucR_like Ligand- 20.3 8E+02 0.017 23.8 11.1 120 176-344 1-123 (247)
406 TIGR02717 AcCoA-syn-alpha acet 20.2 8.3E+02 0.018 26.9 10.7 114 170-298 5-126 (447)
407 PLN02948 phosphoribosylaminoim 20.2 2E+02 0.0043 33.0 6.0 11 292-302 487-497 (577)
408 cd06333 PBP1_ABC-type_HAAT_lik 20.1 8.7E+02 0.019 24.2 12.4 43 255-302 56-99 (312)
409 COG1922 WecG Teichoic acid bio 20.1 5.3E+02 0.011 26.8 8.5 97 154-273 96-195 (253)
No 1
>PLN02564 6-phosphofructokinase
Probab=100.00 E-value=4.9e-124 Score=998.54 Aligned_cols=429 Identities=51% Similarity=0.869 Sum_probs=402.4
Q ss_pred ccccCCcccccCCCCCCCCCcccccCCCCcccCCCCCCCCCcccCCcccCCCeeeeeeeccCCCCCCCCcccccccchhh
Q 009559 77 KRFSLPHITDIFRDATPIPSTFCLRMRTPVTEDFADGYPSDEKWHGYINNNDRVLLKVINFSSPTSAGAECIDRDCTWVE 156 (532)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (532)
..-+||||+||+|+++++|| |+..| |.|+.+. ++||+++|+|++++...... . ..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~--------p~~~~--~~~~~~~--~~~v~~~~~v~~~~~~~~~~-~------------~~ 69 (484)
T PLN02564 15 VLEDVPHLTDYLPDLPTYPN--------PLQDN--PAYSVVK--QYFVNEDDTVAQKIVVHKDS-P------------RG 69 (484)
T ss_pred eeccCcchhhcCCCcCCCCC--------ccCCC--ccccccc--ceEeCCCCeEEEeecccccc-c------------CC
Confidence 34589999999999999998 66666 6788666 78999999999988764211 0 13
Q ss_pred hhhhhcCCCcccccCCCCcEEEEEeCCCCcchHHHHHHHHHHHHH-HcCCceEEEEcccccccccCCceeecCCHHHHhh
Q 009559 157 QWVHRAGPREEIYFKPEEVKAAIVTCGGLCPGLNDVIRHIVITLE-IYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQN 235 (532)
Q Consensus 157 ~~~~~agpr~~i~f~p~~~kiaIvt~GG~cPGlNavIr~iv~~l~-~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~ 235 (532)
.+|+|||||++|||+|+++|||||||||+|||||+|||++|+.+. .||+.+||||++||+||+++++ ++|+++.|++
T Consensus 70 ~~~~~agpr~~i~f~p~~~riaIlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~~~--i~Lt~~~V~~ 147 (484)
T PLN02564 70 THFRRAGPRQKVYFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRNT--IPLTPKVVND 147 (484)
T ss_pred ccceecCCcceEEEcCcceEEEEECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCCCe--EeCCHHHhhc
Confidence 589999999999999999999999999999999999999999885 6787789999999999999876 6799999999
Q ss_pred hhhcCCcceecccCCccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCC
Q 009559 236 IHLSGGSLLGVSRGAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFG 315 (532)
Q Consensus 236 i~~~GGSiLGTSR~~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfG 315 (532)
|+++|||+|||||++++.++|+++|++++||+||+|||||||++|++|++++++++++|+||||||||||||++||+|||
T Consensus 148 i~~~GGTiLGTsR~~~~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~G 227 (484)
T PLN02564 148 IHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFG 227 (484)
T ss_pred HhhCCCceeccCCCcchHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccC
Q 009559 316 FDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKG 395 (532)
Q Consensus 316 FdTAv~~a~~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg 395 (532)
||||+++++++|++++.||.|++|||+|||+|||+|||||++++||++.||+|||||+||+++++.+|+++|++++++++
T Consensus 228 FdTAv~~~~~aI~~i~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~gad~iLIPE~pf~le~~~~ll~~i~~rl~~~~ 307 (484)
T PLN02564 228 FDTAVEEAQRAINAAHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIEKRLKENG 307 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCCCHHHHHHHHHHhhCCCCEEEeCCCCCCcchHHHHHHHHHHHHhccC
Confidence 99999999999999999999988899999999999999999999999559999999999999999999999999999999
Q ss_pred ceEEEeeccccchhhccc----ccccCCCCccccchHHHHHHHHHHHH-HhcCcceeEEEeCCCceeccCCCCchhHHHH
Q 009559 396 SAVVCVAEGAGQSLIKKT----NATDASGNIVLGDVGVLIQQETKKYF-KEIGVPIDVKYIDPTYMIRACRANASDGILC 470 (532)
Q Consensus 396 ~~VVVVAEGag~~l~~~~----~~~DasGn~~l~dIg~~L~~~I~~~f-~~~g~~~~vk~idpgy~iRs~~p~a~D~i~c 470 (532)
|+|||||||++|+++.+. ..+|++||++|+++|.+|+++|+++| ++.++.+++||++|||+|||++|+++|++||
T Consensus 308 ~~VIVVAEGagq~~~~~~~~~~~~~Da~Gn~~l~dig~~La~~I~~~~~~~~~~~~~~r~i~lgy~qRgg~p~a~Dri~a 387 (484)
T PLN02564 308 HMVIVVAEGAGQDLIAESMESSDLQDASGNKLLLDVGLWLSQKIKDHFTKVKKMPINLKYIDPTYMIRAIPSNASDNVYC 387 (484)
T ss_pred CEEEEEeCCCccchhhhhhcccccccccCCcccCcHHHHHHHHHHHHhhhcccCCceEEEecCCchhcCCCCcHHHHHHH
Confidence 999999999999877543 46899999999999999999999999 5667788999999999999999999999999
Q ss_pred HHhhHHHHHhHhcCCccEEEEEECCeeEEechhhHhcCCCcCCCCcHHHHHHHHhcCCCCCC
Q 009559 471 TVLGQNAVHGAFAGFSGITVGLCNTHYAYFPIPEVISYPRAVDPNSRMWHRCLTSTGQPDFI 532 (532)
Q Consensus 471 ~~LG~~AV~~a~aG~Tg~mVgi~n~~~~~vPi~ev~~~~k~vd~~~~~w~~~l~~tgQp~f~ 532 (532)
++||++|||++|+|+||+|||++|++++++||++++..+|+||+++++|+++|++||||+|+
T Consensus 388 ~~lG~~AV~~~~aG~tg~mVg~~~~~~~~vPi~~~~~~~~~v~~~~~~w~~~l~~t~qp~f~ 449 (484)
T PLN02564 388 TLLAHSAVHGAMAGYTGFTVGPVNGRHAYIPFYRITEKQNKVVITDRMWARLLSSTNQPSFL 449 (484)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEECCEEEEEEHHHHhccCCccCCChHHHHHHHHHcCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999984
No 2
>PLN02884 6-phosphofructokinase
Probab=100.00 E-value=1.3e-119 Score=954.02 Aligned_cols=411 Identities=88% Similarity=1.406 Sum_probs=398.6
Q ss_pred CcccCCCeeeeeeeccCCCCCCCCcccccccchhhhhhhhcCCCcccccCCCCcEEEEEeCCCCcchHHHHHHHHHHHHH
Q 009559 122 GYINNNDRVLLKVINFSSPTSAGAECIDRDCTWVEQWVHRAGPREEIYFKPEEVKAAIVTCGGLCPGLNDVIRHIVITLE 201 (532)
Q Consensus 122 ~~v~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~i~f~p~~~kiaIvt~GG~cPGlNavIr~iv~~l~ 201 (532)
.||+++|+|+++++.+.||.|++++|.+++|.|+++||+|||||++|||+|.++|||||||||+|||||+|||++|+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~~~~~p~~~rIaIltsGGdaPGmNa~Iravv~~a~ 80 (411)
T PLN02884 1 GYVNNDDRVLLKVIKYSSPTSAGAECIDPDCSWVEQWVHRAGPRKKIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTLE 80 (411)
T ss_pred CCcCccchhheeeeeccCCCcccccccCCCcccchhhhhhcCCceeEEeCCcceEEEEEcCCCCCccHhHHHHHHHHHHH
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHHHHHHHHhCCcEEEEeCChhhHHHHH
Q 009559 202 IYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEIVDSMEERGINMLFVLGGNGTHAGAN 281 (532)
Q Consensus 202 ~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~ 281 (532)
.||+++||||++||+||+++++.+++|+++.|++|+++|||+|||||++++.++++++|++++||+||+|||||||++|+
T Consensus 81 ~~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~LGtsR~~~~~~~i~~~L~~~~Id~LivIGGdgS~~~a~ 160 (411)
T PLN02884 81 IYGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHLSGGSLLGVSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAGAN 160 (411)
T ss_pred HcCCcEEEEEccCHHHHhCCCceeeecCHHHHHHHHhCCCceeccCCCCccHHHHHHHHHHcCCCEEEEECCchHHHHHH
Confidence 99997899999999999999987788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHh
Q 009559 282 AIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLA 361 (532)
Q Consensus 282 ~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLA 361 (532)
+|++++++++++|+||||||||||||++||+|||||||+++++++|++++.||.|++++|+|||+|||+|||||++++||
T Consensus 161 ~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGFdTAv~~~~~ai~~l~~tA~s~~~rv~iVEvMGR~aG~LAl~aalA 240 (411)
T PLN02884 161 AIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGLVKLMGRSSGFIAMHASLA 240 (411)
T ss_pred HHHHHHHHcCCCceEEeccccccCCCcCcccCCCHHHHHHHHHHHHHHHHHhhhccCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred cCCccEEEcCCCCCCCCChhHHHHHHHHHHhccCceEEEeeccccchhhcccccccCCCCccccchHHHHHHHHHHHHHh
Q 009559 362 SGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVVCVAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKE 441 (532)
Q Consensus 362 sg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg~~VVVVAEGag~~l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~ 441 (532)
+|+||+|||||.||+++++++++++|++++++++|+|||||||+++.+.+....+|++||++|++++.+|+++|+++|++
T Consensus 241 ~g~ad~ilIPE~~f~~~~~~~~~~~i~~~~~~k~~~iIVVAEG~g~~~~~~~~~~Da~G~~~l~~~~~~La~~i~~~~~~ 320 (411)
T PLN02884 241 SGQVDICLIPEVPFTLDGPNGVLRHLEHLIETKGSAVVCVAEGAGQDLLQKTNATDASGNPVLGDIGVHLQQEIKKHFKD 320 (411)
T ss_pred cCCCCEEEeCCCCCCcccHHHHHHHHHHHHhcCCcEEEEEecccccccccccccccccCCcccCcHHHHHHHHHHHHhhc
Confidence 98899999999999998888999999999999999999999999887776555689999999999999999999999988
Q ss_pred cCcceeEEEeCCCceeccCCCCchhHHHHHHhhHHHHHhHhcCCccEEEEEECCeeEEechhhHhcCCCcCCCCcHHHHH
Q 009559 442 IGVPIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHGAFAGFSGITVGLCNTHYAYFPIPEVISYPRAVDPNSRMWHR 521 (532)
Q Consensus 442 ~g~~~~vk~idpgy~iRs~~p~a~D~i~c~~LG~~AV~~a~aG~Tg~mVgi~n~~~~~vPi~ev~~~~k~vd~~~~~w~~ 521 (532)
.|..+++|+++|||+|||++|+++|+++|++||+.||+++++|+||+||+++|++++++||+++++.+|+||++++||++
T Consensus 321 ~g~~~~~r~~~lGy~qRgg~p~a~Dr~la~~lG~~AV~~~~~G~sg~mV~l~~~~~~~vpl~~v~~~~k~vd~~~~~~~~ 400 (411)
T PLN02884 321 IGVPADVKYIDPTYMIRACRANASDAILCTVLGQNAVHGAFAGFSGITVGICNTHYVYLPIPEVIAYPRRVDPNSRMWHR 400 (411)
T ss_pred cCCCceEEEccCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCEEEEEeHHHHhcCCCCCCCCcHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred HHHhcCCCCCC
Q 009559 522 CLTSTGQPDFI 532 (532)
Q Consensus 522 ~l~~tgQp~f~ 532 (532)
+|++||||+|.
T Consensus 401 ~~~~~gqp~~~ 411 (411)
T PLN02884 401 CLTSTGQPDFH 411 (411)
T ss_pred HHHhcCCCCCC
Confidence 99999999994
No 3
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=5.8e-119 Score=955.19 Aligned_cols=430 Identities=48% Similarity=0.823 Sum_probs=393.5
Q ss_pred cccCCcccccCCCCCCCCCcccccCCCCcccCCCCCCCCCcccCCcccCCCeeeeeeeccCCCCCCCCcccccccchhhh
Q 009559 78 RFSLPHITDIFRDATPIPSTFCLRMRTPVTEDFADGYPSDEKWHGYINNNDRVLLKVINFSSPTSAGAECIDRDCTWVEQ 157 (532)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (532)
.|.+|.|. -.++|| ||..+ +.|.... +||+|+|+|++++........ .. +...+.
T Consensus 9 ~~~~~~lg-----~~~~~~--------p~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~ 63 (443)
T PRK06830 9 DFAIETLG-----ECKIPS--------PLIYS--LAAGDTT---HFVSDSDRVLFDVSLSLIKEE-DA------PGTEPP 63 (443)
T ss_pred cccccccC-----CCCCCC--------ccccc--ccccccc---eecCCCceEEEeccccccccc-cc------Cccccc
Confidence 46666665 567777 55544 4555554 699999999998876432111 00 011246
Q ss_pred hhhhcCCCcccccCCCCcEEEEEeCCCCcchHHHHHHHHHHHHH-HcCCceEEEEccccccccc-CCceeecCCHHHHhh
Q 009559 158 WVHRAGPREEIYFKPEEVKAAIVTCGGLCPGLNDVIRHIVITLE-IYGVKNIVGIPFGYRGFCD-KELTEMPLSRKVVQN 235 (532)
Q Consensus 158 ~~~~agpr~~i~f~p~~~kiaIvt~GG~cPGlNavIr~iv~~l~-~ygv~~V~Gi~~Gy~GL~~-~~~~~i~Lt~~~V~~ 235 (532)
+||+||||++|||+|+++|||||||||+|||||+|||++|+++. +||+.+||||++||+||++ .....++|+++.|++
T Consensus 64 ~~~~agpr~~i~f~p~~~riaIvtsGG~~PGmN~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~~~~~~~Lt~~~v~~ 143 (443)
T PRK06830 64 SFEKAGPREKIYFDPSKVKAAIVTCGGLCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPEVVAD 143 (443)
T ss_pred hhhhcCCcceeEEcCcccEEEEECCCCCchHHHHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhccCCCEEECCHHHHhh
Confidence 89999999999999999999999999999999999999999995 6887789999999999998 112347799999999
Q ss_pred hhhcCCcceecccCCccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCC
Q 009559 236 IHLSGGSLLGVSRGAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFG 315 (532)
Q Consensus 236 i~~~GGSiLGTSR~~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfG 315 (532)
|+++|||+|||||++++.++|+++|++++||+||+|||||||++|++|++++++++++|+||||||||||||++||+|||
T Consensus 144 i~~~GGTiLGTsR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~G 223 (443)
T PRK06830 144 IHEFGGTILGSSRGPQDPEEIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFG 223 (443)
T ss_pred HHhCCCccccCCCCchhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccC
Q 009559 316 FDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKG 395 (532)
Q Consensus 316 FdTAv~~a~~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg 395 (532)
||||+++++++|+++++||.|+++||+|||+|||+|||||++++||+++||+|||||.||+++|+.+++++|++++++++
T Consensus 224 FdTAv~~a~~aI~~~~~eA~s~~~rv~iVEvMGR~sG~lA~~aaLA~~~ad~ilIPE~~f~l~~~~~ll~~l~~r~~~~~ 303 (443)
T PRK06830 224 FETAVEKATEAIRCAHVEANGAPNGIGLVKLMGRHSGFIAAYAALASKDVNFVLIPEVPFDLEGPNGLLAALEKRLAERG 303 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEEECCCcccHHHHHHHHhcCCCCEEEecCCCCCchhHHHHHHHHHHHHHhCC
Confidence 99999999999999999999988899999999999999999999999669999999999999999999999999999999
Q ss_pred ceEEEeeccccchhhcccccccCCCCccccchHHHHHHHHHHHHHhcCcceeEEEeCCCceeccCCCCchhHHHHHHhhH
Q 009559 396 SAVVCVAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILCTVLGQ 475 (532)
Q Consensus 396 ~~VVVVAEGag~~l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~~~vk~idpgy~iRs~~p~a~D~i~c~~LG~ 475 (532)
|+|||||||++|++......+|+|||+++++++.+|+++|+++|++.|+++++||++|||+|||++||++|++||++||+
T Consensus 304 ~~VIVVAEGag~~l~~~~~~~Da~gn~~l~~ig~~L~~~i~~~~~~~~~~~~~r~~~pgy~qRg~~psa~Dr~~a~~lG~ 383 (443)
T PRK06830 304 HAVIVVAEGAGQELFDDTGETDASGNPKLGDIGLFLKDRIKEYFKARGIPINLKYIDPSYIIRSVPANANDSVYCGFLGQ 383 (443)
T ss_pred ceEEEEecCcccccccccccccccCCcccccHHHHHHHHHHHHhcccCCceEEEEccCCccccCCCCCHHHHHHHHHHHH
Confidence 99999999999988877678999999999999999999999999877888999999999999999999999999999999
Q ss_pred HHHHhHhcCCccEEEEEECCeeEEechhhHhcCCCcCCCCcHHHHHHHHhcCCCCCC
Q 009559 476 NAVHGAFAGFSGITVGLCNTHYAYFPIPEVISYPRAVDPNSRMWHRCLTSTGQPDFI 532 (532)
Q Consensus 476 ~AV~~a~aG~Tg~mVgi~n~~~~~vPi~ev~~~~k~vd~~~~~w~~~l~~tgQp~f~ 532 (532)
.|||++|+|+||+|||++|++++++||+++++.+|+||+++++|++||++||||.|+
T Consensus 384 ~AV~~~~~G~tg~~Vg~~~~~~~~vPl~~v~~~~k~vd~~~~~w~~~l~~tgq~~~~ 440 (443)
T PRK06830 384 NAVHAAMAGKTGMVVGRWNNRFVHLPIDLAVSKRKKVNPEGDLWRSVLESTGQPRSM 440 (443)
T ss_pred HHHHHHHCCCCCEEEEEECCEEEEEeHHHHhccCCCCCCccHHHHHHHHHhCCCccc
Confidence 999999999999999999999999999999999999999999999999999999984
No 4
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=100.00 E-value=3.2e-115 Score=930.66 Aligned_cols=396 Identities=51% Similarity=0.853 Sum_probs=372.8
Q ss_pred CCcccCCCeeeeeeeccCCCCCCCCcccccccchhhhhhhhcCCCcccccCCCCcEEEEEeCCCCcchHHHHHHHHHHHH
Q 009559 121 HGYINNNDRVLLKVINFSSPTSAGAECIDRDCTWVEQWVHRAGPREEIYFKPEEVKAAIVTCGGLCPGLNDVIRHIVITL 200 (532)
Q Consensus 121 ~~~v~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~i~f~p~~~kiaIvt~GG~cPGlNavIr~iv~~l 200 (532)
..||+++|+|++++........ . ...+|+|||||++|||+|+++|||||||||+|||||+|||++|+++
T Consensus 45 ~~~~~~~~~v~~~~~~~~~~~~-------~----~~~~~~~agpr~~~~f~p~~~~iaIvT~GG~~PGlN~vIr~iv~~~ 113 (459)
T PTZ00286 45 EAFVDTNSYILSTPRFGPDDVI-------V----NTKRWLRAGPRKHLYFNPKEVKAGIVTCGGLCPGLNVVIRELVMNL 113 (459)
T ss_pred cceecCCCeEEeecccCccccc-------c----ccchheecCCceeEEEcccccEEEEECCCCCChHHHHHHHHHHHHH
Confidence 5799999999998865431110 1 1358999999999999999999999999999999999999999999
Q ss_pred H-HcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHHHHHHHHhCCcEEEEeCChhhHHH
Q 009559 201 E-IYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEIVDSMEERGINMLFVLGGNGTHAG 279 (532)
Q Consensus 201 ~-~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ivd~L~~~gId~L~vIGGdGT~~g 279 (532)
. .|++.+||||++||+||+++++ ++||++.|++|+++|||+|||||++++.++|+++|++++||+||+|||||||++
T Consensus 114 ~~~~~v~~V~Gi~~Gy~GL~~~~~--i~Lt~~~V~~i~~~GGTiLGTSR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~~ 191 (459)
T PTZ00286 114 INNYGVKTIYGAKYGYKGLYKEDW--IKLDPKDVKTIHRLGGTILGSSRGGFDPKVMVDTLIRHGINILFTLGGDGTHRG 191 (459)
T ss_pred HHhcCCcEEEEEecCHHHhcCCCe--EECCHHHhhhHHhCCCceeccCCChhhHHHHHHHHHHcCCCEEEEeCCchHHHH
Confidence 6 6887799999999999999985 679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHHHHHhhhhccccEEEEEecCCCccHHHHHHh
Q 009559 280 ANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHAS 359 (532)
Q Consensus 280 A~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aa 359 (532)
|.+|++|+++++++|+||||||||||||++||+|||||||+++++++|+++++||.|++|+|+|||+|||+|||||++++
T Consensus 192 A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv~~~~~aI~~~~~eA~S~~~~v~iVEvMGR~sG~LAl~aa 271 (459)
T PTZ00286 192 ALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVEEAQNAIRAAYVEAKSAKNGVGIVKLMGRDSGFIALHAS 271 (459)
T ss_pred HHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcchhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999987899999999999999999999
Q ss_pred HhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccCceEEEeeccccchhhccc--ccccCCCCccccchHHHHHHHHHH
Q 009559 360 LASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVVCVAEGAGQSLIKKT--NATDASGNIVLGDVGVLIQQETKK 437 (532)
Q Consensus 360 LAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg~~VVVVAEGag~~l~~~~--~~~DasGn~~l~dIg~~L~~~I~~ 437 (532)
||+++||+|||||.||+++ +++++|++++++++|+|||||||+++++.+.. ..+|++||++|+|+|.+|+++|++
T Consensus 272 LA~~~ad~vlIPE~~f~l~---~ll~~l~~r~~~~~~~VIVVaEGa~~~~~~~~~~~~~D~~Gn~~l~dig~~L~~~I~~ 348 (459)
T PTZ00286 272 VASADVNVCLIPEFDIPLE---GVLEYIEQRLQKKGHCVIVVAEGAGQSLKDADLDLGTDASGNKKLWDIGVYLKDEITK 348 (459)
T ss_pred hhhcCCCEEEeCCCCCCHH---HHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCCcccccHHHHHHHHHHH
Confidence 9997799999999999986 89999999999999999999999998776543 468999999999999999999999
Q ss_pred HHHhcCcceeEEEeCCCceeccCCCCchhHHHHHHhhHHHHHhHhcCCccEEEEEECCeeEEechhh-HhcCCCcCCCCc
Q 009559 438 YFKEIGVPIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHGAFAGFSGITVGLCNTHYAYFPIPE-VISYPRAVDPNS 516 (532)
Q Consensus 438 ~f~~~g~~~~vk~idpgy~iRs~~p~a~D~i~c~~LG~~AV~~a~aG~Tg~mVgi~n~~~~~vPi~e-v~~~~k~vd~~~ 516 (532)
+|++.+..+++||++|||+|||++||++|++||++||++|||++|+|+||+|||++|++++++||++ +.+.+|+||+++
T Consensus 349 ~~~~~~~~~~~r~~~~gy~qRg~~psa~Dr~~a~~lG~~AV~~~~~G~tg~~Vg~~~~~~~~vPl~~v~~~~~~~v~~~~ 428 (459)
T PTZ00286 349 YLKKKKPEHTVKYIDPSYMIRAVPANAADAKFCTQLAQNAVHGAMAGFTGFIIGHVHNNYVMIPIKEMSGNYRRRVNPEG 428 (459)
T ss_pred HHhhccCceEEEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEeHHHHhCCCccccCcch
Confidence 9988888899999999999999999999999999999999999999999999999999999999999 567789999999
Q ss_pred HHHHHHHHhcCCCCCC
Q 009559 517 RMWHRCLTSTGQPDFI 532 (532)
Q Consensus 517 ~~w~~~l~~tgQp~f~ 532 (532)
+||++++++||||.|+
T Consensus 429 ~~w~~~~~~tgqp~~~ 444 (459)
T PTZ00286 429 RLWQRMLAITGQPSFL 444 (459)
T ss_pred HHHHHHHHhcCCCCcc
Confidence 9999999999999995
No 5
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=100.00 E-value=3e-90 Score=726.24 Aligned_cols=345 Identities=26% Similarity=0.399 Sum_probs=311.7
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHH--cCCceEEEEcccccccccCCceeecCCH---HHHhhhhhcCCcceeccc
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEI--YGVKNIVGIPFGYRGFCDKELTEMPLSR---KVVQNIHLSGGSLLGVSR 248 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~--ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~---~~V~~i~~~GGSiLGTSR 248 (532)
.+||||+||||||||||++||++|+.+.. .++ +||||++||+||+++++.+ |++ +.++.|+++|||+|||||
T Consensus 3 ~k~i~IltsGGdapGmNaaI~~vv~~a~~~~~~~-~V~G~~~G~~GL~~~~~~~--l~~~~~~~~~~i~~~GGt~LGtsR 79 (403)
T PRK06555 3 VKKVALLTAGGLAPCLSSAVGGLIERYTEIAPEV-EIIAYRSGYQGLLLGDSIE--ITPAVRANAGLLHRYGGSPIGNSR 79 (403)
T ss_pred cCEEEEECCCCCchhHHHHHHHHHHHHHhhcCCc-EEEEEecCHHHhcCCCcee--CChhHhhhhhHHHhCCCceeccCC
Confidence 46999999999999999999999998854 677 7999999999999998744 555 556679999999999999
Q ss_pred CCc-----------------cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCC
Q 009559 249 GAP-----------------TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMD 311 (532)
Q Consensus 249 ~~~-----------------~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD 311 (532)
+++ ..++++++|++++||+||+||||||+++|++|++++++++++|+||||||||||||++||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td 159 (403)
T PRK06555 80 VKLTNVADCVKRGLVKEGENPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIR 159 (403)
T ss_pred CCccccchhccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCcc
Confidence 764 257899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhc-------------------CCccEEEcCC
Q 009559 312 KTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLAS-------------------GQIDICLIPE 372 (532)
Q Consensus 312 ~SfGFdTAv~~a~~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAs-------------------g~ad~~LIPE 372 (532)
+||||+||+++++++|++++.||.|+++.++|||||||+|||||++++||+ +.+|+|||||
T Consensus 160 ~t~Gf~TA~~~~~~ai~~l~~ta~s~~r~~~vvEvMGR~aG~LAl~aalA~~~~~~~~~~~~~~~~~~~~~gad~ilIPE 239 (403)
T PRK06555 160 QSLGAWTAAEQGARFFDNVINEHSANPRMLIIHEVMGRNCGWLTAATARAYREWLDRQEYVPGFGLSAERWDIHAVYLPE 239 (403)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEccCCchHHHHHHHHHhhccccccccccccccccccCCCCcEEEccC
Confidence 999999999999999999999999876555666999999999999999993 3499999999
Q ss_pred CCCCCCChhHHHHHHHHHHhccCceEEEeeccccchhhcc-------cccccCCCCccccc--hHHHHHHHHHHHHHhcC
Q 009559 373 SPFNLHGPNGVLRHLKYLIETKGSAVVCVAEGAGQSLIKK-------TNATDASGNIVLGD--VGVLIQQETKKYFKEIG 443 (532)
Q Consensus 373 ~pf~leg~~~ll~~lk~~~~~kg~~VVVVAEGag~~l~~~-------~~~~DasGn~~l~d--Ig~~L~~~I~~~f~~~g 443 (532)
+||+++ .++++|++++++++|+|||||||+++.+..+ ...+|++||.+|++ ++.+|+++|++++ |
T Consensus 240 ~~~~~e---~~~~~ik~~~~~k~~~iIvVaEG~~~~~~~~~~~~~g~~~~~Da~G~~~l~~~~~g~~la~~i~~~~---g 313 (403)
T PRK06555 240 MAFDLE---AEAERLKAVMDEVGNVNIFLSEGAGLDAIVAEMEAAGEEVKRDAFGHVKLDTINPGAWFAKQFAELL---G 313 (403)
T ss_pred CCCCHH---HHHHHHHHHHHhCCCEEEEEeCCCCcccchhhhhhccCccccccccceecCCCcHHHHHHHHHHHHh---C
Confidence 999986 7999999999899999999999997644321 23489999999987 5889999999886 4
Q ss_pred cceeEEEeCCCceeccCCCCchhHHHHHHhhHHHHHhHhcCCccEEEEE---ECCeeEEechhhHhcCCCcCCCCcHHHH
Q 009559 444 VPIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHGAFAGFSGITVGL---CNTHYAYFPIPEVISYPRAVDPNSRMWH 520 (532)
Q Consensus 444 ~~~~vk~idpgy~iRs~~p~a~D~i~c~~LG~~AV~~a~aG~Tg~mVgi---~n~~~~~vPi~ev~~~~k~vd~~~~~w~ 520 (532)
.+ ++|+++|||+|||++|+++|+++|++||..||+++++|+|| ||++ +|++++++||++++. .|.+|++++||.
T Consensus 314 ~e-~~r~~~lGy~qRgg~psa~Dr~la~~lG~~AV~~~~~G~sg-~v~~~~~~~g~~~~vp~~~~~~-~k~~~~~~~~~~ 390 (403)
T PRK06555 314 AE-KVMVQKSGYFARSAPANAEDLRLIKSMVDLAVECALRGVSG-VIGHDEEQGGKLRAIEFPRIKG-GKAFDTSTPWFT 390 (403)
T ss_pred CC-ceEEecCChhhcCCCCCHHHHHHHHHHHHHHHHHHHCCCCC-eEEEEeeeCCEEEEEEHHHHhc-CCCCCCCHHHHH
Confidence 31 38899999999999999999999999999999999999999 5788 799999999999988 489999999999
Q ss_pred HHHHhcCCCC
Q 009559 521 RCLTSTGQPD 530 (532)
Q Consensus 521 ~~l~~tgQp~ 530 (532)
++|++||||.
T Consensus 391 ~~~~~~~q~~ 400 (403)
T PRK06555 391 ELLDEIGQPY 400 (403)
T ss_pred HHHHhhCCCC
Confidence 9999999995
No 6
>PRK14071 6-phosphofructokinase; Provisional
Probab=100.00 E-value=2.1e-85 Score=685.20 Aligned_cols=333 Identities=29% Similarity=0.447 Sum_probs=304.0
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHH-cCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccC-C-
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEI-YGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRG-A- 250 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~-ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~-~- 250 (532)
..||||+||||+|||||++||++++++.. +|+ +||||++||+||++++...++|+++.|++|+++|||+|||||. .
T Consensus 4 ~~~I~IltsGG~apGmNa~i~~vv~~a~~~~g~-~v~G~~~G~~GL~~~~~~~~~l~~~~v~~~~~~GGt~LgtsR~~~~ 82 (360)
T PRK14071 4 KKRIGILTSGGDCAGLNAVIRAVVHRARGTYGW-EVIGIRDATQGLMARPPQYIELDLDQVDDLLRMGGTILGTTNKGDP 82 (360)
T ss_pred CCEEEEECCCCCchhHHHHHHHHHHHHHhcCCC-EEEEEecChHHHhcCCCCeEECCHHHHhhHHhCCCceeccCCCCCc
Confidence 46999999999999999999999999976 699 7999999999999985444679999999999999999999973 2
Q ss_pred -----------ccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhH
Q 009559 251 -----------PTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTA 319 (532)
Q Consensus 251 -----------~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTA 319 (532)
...++++++|++++||+||+||||||+++|.+|++. .+|+||||||||||||++||+||||+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~-----~~i~vIgiPkTIDNDl~~td~t~Gf~TA 157 (360)
T PRK14071 83 FAFPMPDGSLRDRSQEIIDGYHSLGLDALIGIGGDGSLAILRRLAQQ-----GGINLVGIPKTIDNDVGATEVSIGFDTA 157 (360)
T ss_pred cccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHh-----cCCcEEEecccccCCCcCcccCcChhHH
Confidence 135889999999999999999999999999999862 3799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhc-cCceE
Q 009559 320 VEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIET-KGSAV 398 (532)
Q Consensus 320 v~~a~~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~-kg~~V 398 (532)
+++++++|++++++|.| ++||+|||||||+|||||++++||++ ||+|||||.||+++ .++++|++++++ ++|+|
T Consensus 158 ~~~~~~~id~i~~ta~s-~~rv~ivEvMGR~~G~LAl~~~la~g-a~~iliPE~~~~~~---~l~~~i~~~~~~~~~~~i 232 (360)
T PRK14071 158 VNIATEALDRLHFTAAS-HNRVMILEVMGRDAGHIALAAGIAGG-ADVILIPEIPYTLE---NVCKKIRERQEEGKNFCL 232 (360)
T ss_pred HHHHHHHHHHHHhhhcc-cCCEEEEEECCCCccHHHHHhHhhcC-CCEEEECCCCCCHH---HHHHHHHHHHHcCCCeEE
Confidence 99999999999999987 68999999999999999999999998 99999999999976 899999999875 99999
Q ss_pred EEeeccccchhhcccccccCCCCccccchHHHHHHHHHHHHHhcCcceeEEEeCCCceeccCCCCchhHHHHHHhhHHHH
Q 009559 399 VCVAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILCTVLGQNAV 478 (532)
Q Consensus 399 VVVAEGag~~l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~~~vk~idpgy~iRs~~p~a~D~i~c~~LG~~AV 478 (532)
||||||+..+.-.....+|++||+++++++.+|+++|++++ | +++|+..|||+|||+.|+++|+++|++||..||
T Consensus 233 ivvsEG~~~~~g~~~~~~d~~g~~~~~~~~~~l~~~i~~~~---g--~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av 307 (360)
T PRK14071 233 VVVSEAVRTEEGEQVTKTQALGEDRYGGIGQYLAEQIAERT---G--AETRVTVLGHIQRGGIPSPRDRLLASAFGVAAV 307 (360)
T ss_pred EEEcCCCcccccccccccccccccccCcHHHHHHHHHHHhc---C--CCeeEEecChhhcCCCCChHHHHHHHHHHHHHH
Confidence 99999996432222234799999999999999999998875 4 457788899999999999999999999999999
Q ss_pred HhHhcCCccEEEEEECCeeEEechhhHhcCCCcCCCCcHHHHHH
Q 009559 479 HGAFAGFSGITVGLCNTHYAYFPIPEVISYPRAVDPNSRMWHRC 522 (532)
Q Consensus 479 ~~a~aG~Tg~mVgi~n~~~~~vPi~ev~~~~k~vd~~~~~w~~~ 522 (532)
+++++|+||+||+++++++.++||+++++.+|.||+++.+|+-.
T Consensus 308 ~~~~~G~t~~mv~~~~~~~~~vpl~~v~~~~~~v~~~~~~~~~~ 351 (360)
T PRK14071 308 DLIAQGKFDRMVAWQNRQVVSVPIAEAIATYRAVDPEGTLVKTA 351 (360)
T ss_pred HHHHcCCCCEEEEEECCEEEEEeHHHHhcCCCCCCccHHHHHHH
Confidence 99999999999999999999999999999889999999888764
No 7
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=100.00 E-value=1.7e-84 Score=673.66 Aligned_cols=325 Identities=31% Similarity=0.459 Sum_probs=302.3
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc---
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP--- 251 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~--- 251 (532)
+||||+||||+|||||++||++++++.++|+ +||||++||+||+++++ ++|+++.++.|+++|||+|||||+++
T Consensus 1 ~ri~Il~sGG~apG~N~~i~~~v~~~~~~g~-~v~G~~~G~~GL~~~~~--~~l~~~~v~~~~~~gGs~LgtsR~~~~~~ 77 (338)
T cd00363 1 KKIGVLTSGGDAPGMNAAIRGVVRSAIAEGL-EVYGIYEGYAGLVEGDI--KELDWESVSDIINRGGTIIGSARCKEFRT 77 (338)
T ss_pred CeEEEEccCCCchhHHHHHHHHHHHHHHCCC-EEEEEecChHHhCCCCe--EeCCHHHhcchhhCCCeecccCCCCccCC
Confidence 5899999999999999999999999998997 79999999999999976 66999999999999999999999875
Q ss_pred --cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHH
Q 009559 252 --TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINS 329 (532)
Q Consensus 252 --~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~ 329 (532)
+.++++++|++++||+||+||||||+++|++|++++++++.+|+||||||||||||++||+|||||||+++++++|++
T Consensus 78 ~~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~s~Gf~TA~~~~~~~i~~ 157 (338)
T cd00363 78 EEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTALKTIVEAIDR 157 (338)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcccCcCHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHh-ccCceEEEeeccccch
Q 009559 330 AYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIE-TKGSAVVCVAEGAGQS 408 (532)
Q Consensus 330 a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~-~kg~~VVVVAEGag~~ 408 (532)
++.||.| +++|+|||+|||+|||||++++||++ ||+|||||.||+++..+.+++.|+++++ +++|+|||||||+++.
T Consensus 158 l~~~a~s-~~rv~ivEvMGR~~G~Lal~~ala~~-ad~iliPE~~~~~~~~~~~~~~i~~r~~~~~~~~vivvsEG~~~~ 235 (338)
T cd00363 158 IRDTASS-HQRTFVVEVMGRHCGDIALEAGLATG-ADIIFIPEEPAADEWEEEMVDVIKKRRERGKRHGIVIVAEGAIDF 235 (338)
T ss_pred HHHhccc-CCCEEEEEECCcCHHHHHHHHHHHhC-CCEEEeCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCCCccc
Confidence 9999998 78999999999999999999999998 9999999999977777799999999887 5999999999999743
Q ss_pred hhcccccccCCCCccccchHHHHHHHHHHHHHhcCcceeEEEeCCCceeccCCCCchhHHHHHHhhHHHHHhHhcCCccE
Q 009559 409 LIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHGAFAGFSGI 488 (532)
Q Consensus 409 l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~~~vk~idpgy~iRs~~p~a~D~i~c~~LG~~AV~~a~aG~Tg~ 488 (532)
+ |++ ....+|+++|++++ | +++|+..|||+|||++|+++|++||++||..||+++++|+||+
T Consensus 236 ~----------~~~---~~~~~l~~~i~~~~---~--~~~r~~~lGy~qRg~~ps~~D~~~a~~lG~~Av~~~~~g~tg~ 297 (338)
T cd00363 236 I----------PKP---ITEKLLAKLVEERL---G--FDTRATVLGHVQRGGTPTAFDRILASRLGAEAVELLLEGTGGT 297 (338)
T ss_pred c----------ccC---chHHHHHHHHHHHc---C--CceEEeecCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCCc
Confidence 2 221 12468899988875 4 4688999999999999999999999999999999999999999
Q ss_pred EEEEECC---eeEEechhhHhcCCCc--CCCCcHHHHHH
Q 009559 489 TVGLCNT---HYAYFPIPEVISYPRA--VDPNSRMWHRC 522 (532)
Q Consensus 489 mVgi~n~---~~~~vPi~ev~~~~k~--vd~~~~~w~~~ 522 (532)
||+++|+ ++.++||+++++.+|+ ||++++||+-+
T Consensus 298 mv~~~~~~~~~~~~vpl~~~~~~~~~~~~~~~~~~~~~~ 336 (338)
T cd00363 298 PVGIQNLNENQVVRHPLTEAVNMTKRVGVDLEGRPFKKF 336 (338)
T ss_pred EEEEECCccCEEEEecHHHHHhhhcccccCCChHHHHHh
Confidence 9999999 9999999999999998 79999999865
No 8
>PRK14072 6-phosphofructokinase; Provisional
Probab=100.00 E-value=3.5e-84 Score=686.85 Aligned_cols=329 Identities=25% Similarity=0.375 Sum_probs=298.0
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcC--CceEEEEcccccccccCCceeecCCHHHHhh---hhhcCCcceeccc
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYG--VKNIVGIPFGYRGFCDKELTEMPLSRKVVQN---IHLSGGSLLGVSR 248 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~yg--v~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~---i~~~GGSiLGTSR 248 (532)
..||||+||||||||||++||++++++..+| + +||||++||+||+++++.+ |+...++. |.++|||+|||||
T Consensus 3 ~k~i~IltsGGdapGmNaaIr~vv~~a~~~g~~~-~V~G~~~G~~GLl~~~~~~--l~~~~~~~i~~i~~~gGt~LgssR 79 (416)
T PRK14072 3 KGNALYAQSGGPTAVINASAAGVIEEARKHKKIG-KVYGARNGIIGILDEDLID--LSKESDEALAALAHTPSGALGSCR 79 (416)
T ss_pred CceEEEEccCCchHHHHHHHHHHHHHHHHhCCce-EEEEEecChHHhcCCCeee--CChhhHhHHHHHhcCCCeEeccCC
Confidence 4799999999999999999999999998777 6 7999999999999998744 55554444 8999999999999
Q ss_pred CCc--------cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHH
Q 009559 249 GAP--------TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAV 320 (532)
Q Consensus 249 ~~~--------~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv 320 (532)
+++ ..++++++|++++||+||+|||||||++|++|++++++++++|+||||||||||||++||+||||+||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~t~GF~TA~ 159 (416)
T PRK14072 80 YKLKSLEEDRAEYERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAA 159 (416)
T ss_pred CCCcccccChHHHHHHHHHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCCCCChHHHH
Confidence 864 368899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcc--ccEEEEEecCCCccHHHHHHhHh-----cCCccEEEcCCCCCCCCChhHHHHHHHHHHhc
Q 009559 321 EEAQRAINSAYIEAHSAY--HGIGIVKLMGRSSGYIAMHASLA-----SGQIDICLIPESPFNLHGPNGVLRHLKYLIET 393 (532)
Q Consensus 321 ~~a~~aI~~a~~eA~S~~--~~V~vVevMGR~sG~LA~~aaLA-----sg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~ 393 (532)
++++++|+++..|++++. +||+|||||||+|||||++++|| +| ||+|||||+||+++ .++++|++++++
T Consensus 160 ~~i~~ai~~l~~D~~~ta~s~Rv~iVEvMGR~aG~LAl~a~lA~~~~~~g-ad~iliPE~~~~~~---~~~~~i~~~~~~ 235 (416)
T PRK14072 160 KYIATSVLEAALDVAAMANTSKVFILEVMGRHAGWLAAAAALAKQNPDDA-PHLIYLPERPFDEE---KFLADVRAIVKR 235 (416)
T ss_pred HHHHHHHHHHHHHHHhcccCceEEEEEEeCcchhHHHHHHhhccccCCCC-ccEEEccCCCCCHH---HHHHHHHHHHHh
Confidence 999999999977766542 28999999999999999999999 66 99999999999976 899999999999
Q ss_pred cCceEEEeeccccc----hhhcccccccCCCCccccchHHHHHHHHHHHHHhcCcceeEEEeCCCceeccCC--CCchhH
Q 009559 394 KGSAVVCVAEGAGQ----SLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACR--ANASDG 467 (532)
Q Consensus 394 kg~~VVVVAEGag~----~l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~~~vk~idpgy~iRs~~--p~a~D~ 467 (532)
++|+|||||||+.. .+.+....+|++||+++++++.+|+++|++++ | +++|++.|||+|||+. |+++|+
T Consensus 236 ~~~~ivvVaEG~~~~~g~~i~e~~~~~D~~gh~~l~g~~~~La~~i~~~~---g--~~~R~~~LG~~QRgg~~~ps~~Dr 310 (416)
T PRK14072 236 YGYCVVVVSEGIRDADGKFIAEAGLAEDAFGHAQLGGVAPVLANLIKEKL---G--KKVHWAVLDYLQRAARHIASKTDV 310 (416)
T ss_pred CCCeEEEEecCcccccccchhccccccCCCCCcccccHHHHHHHHHHHHh---C--CeEEEEeCChhhhCCCCCCCHHHH
Confidence 99999999999942 22222234699999999999999999999886 4 5789999999999999 999999
Q ss_pred HHHHHhhHHHHHhHhcCCccEEEEEECC-------eeEEechhhHhcCCCcCCC
Q 009559 468 ILCTVLGQNAVHGAFAGFSGITVGLCNT-------HYAYFPIPEVISYPRAVDP 514 (532)
Q Consensus 468 i~c~~LG~~AV~~a~aG~Tg~mVgi~n~-------~~~~vPi~ev~~~~k~vd~ 514 (532)
+||++||..||+++++|+||+||+++|+ ++..+||+++++++|.+++
T Consensus 311 ~~a~~lG~~AV~~~~~G~~g~mv~l~~~~~~~y~~~~~~vpl~~v~~~~k~v~~ 364 (416)
T PRK14072 311 EEAYAVGKAAVEYALAGKNGVMPAIRRTSDDPYKWKIGLVPLSKVANKEKKMPP 364 (416)
T ss_pred HHHHHHHHHHHHHHHcCCCCceEEEEcCCCCcceeEEEcccHHHHHhhcCcCCH
Confidence 9999999999999999999999999998 8999999999998787765
No 9
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=100.00 E-value=4.5e-83 Score=659.44 Aligned_cols=312 Identities=38% Similarity=0.594 Sum_probs=288.5
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHH-HcCCceEEEEcccccccccCCceeecC-CHHHHhhhhhcCCcceecccCCc--
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLE-IYGVKNIVGIPFGYRGFCDKELTEMPL-SRKVVQNIHLSGGSLLGVSRGAP-- 251 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~-~ygv~~V~Gi~~Gy~GL~~~~~~~i~L-t~~~V~~i~~~GGSiLGTSR~~~-- 251 (532)
|||||||||||||||++||++++++. .+|+ +||||++||+||+++++ ++| +++.|+.|+++|||+|||||.++
T Consensus 1 ~IgIltsGG~apGmN~~i~~~v~~a~~~~g~-~v~g~~~G~~GL~~~~~--~~l~~~~~v~~~~~~GGt~LgtsR~~~~~ 77 (324)
T TIGR02483 1 RIGVLTGGGDCPGLNAVIRGVVRRAIAEYGW-EVIGIRDGWRGLLEGDT--VPLLDLEDVRGILPRGGTILGSSRTNPFK 77 (324)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHcCCc-eEEEEccCHHHhCCCCe--EecCCHHHHHHHHhCCCccccCCCCCccc
Confidence 69999999999999999999999886 6799 79999999999999886 446 99999999999999999999864
Q ss_pred ----cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHH
Q 009559 252 ----TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAI 327 (532)
Q Consensus 252 ----~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI 327 (532)
+.++++++|++++||+|++||||||+++|++|++. +++||||||||||||++||+|||||||+++++++|
T Consensus 78 ~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~~~------gi~vigiPkTIDNDl~gtd~tiGfdTA~~~~~~~i 151 (324)
T TIGR02483 78 YEEDGDDKIVANLKELGLDALIAIGGDGTLGIARRLADK------GLPVVGVPKTIDNDLEATDYTFGFDTAVEIATEAL 151 (324)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHhc------CCCEEeeccccCCCCcCCccCcCHHHHHHHHHHHH
Confidence 36789999999999999999999999999999862 49999999999999999999999999999999999
Q ss_pred HHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhc-cCceEEEeecccc
Q 009559 328 NSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIET-KGSAVVCVAEGAG 406 (532)
Q Consensus 328 ~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~-kg~~VVVVAEGag 406 (532)
++++.+|.| ++|++|||+|||+|||||++++||++ ||+|||||+||+++ .++++|+++++. ++|+|||||||+.
T Consensus 152 ~~i~~ta~S-~~r~~ivEvMGR~~G~LAl~~ala~~-a~~iliPE~~~~~~---~l~~~v~~~~~~g~~~~vvvvsEG~~ 226 (324)
T TIGR02483 152 DRLHTTAES-HHRVMVVEVMGRHAGWIALHSGIAGG-ADVILIPEIPFDID---SVCEKVRERFARGKRFAIVVVAEGAK 226 (324)
T ss_pred HHHHHHHhh-cCCEEEEEEcCCChhHHHHHHHhccC-CCEEEecCCCCCHH---HHHHHHHHHHHhCCCceEEEEecCcc
Confidence 999999987 67899999999999999999999997 99999999999975 799999999885 9999999999995
Q ss_pred chhh---cccccccCCCCccccchHHHHHHHHHHHHHhcCcceeEEEeCCCceeccCCCCchhHHHHHHhhHHHHHhHhc
Q 009559 407 QSLI---KKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHGAFA 483 (532)
Q Consensus 407 ~~l~---~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~~~vk~idpgy~iRs~~p~a~D~i~c~~LG~~AV~~a~a 483 (532)
.... .++..+|++||+++++++.+|+++|++++ | +++|+..|||+|||+.|+++|+++|++||..||+++++
T Consensus 227 ~~~~~~~~~~~~~d~~gh~~~~~~~~~l~~~i~~~~---g--~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~ 301 (324)
T TIGR02483 227 PKGGEMVVQEGVKDAFGHVRLGGIGNWLAEEIERRT---G--IETRATVLGHLQRGGSPSAFDRVLATRFGVAAVDLVHE 301 (324)
T ss_pred ccccchhccccccccccCcccCcHHHHHHHHHHHhc---C--CcceECCcChhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 4322 12345899999999999999999998875 4 47889999999999999999999999999999999999
Q ss_pred CCccEEEEEECCeeEEechhhHh
Q 009559 484 GFSGITVGLCNTHYAYFPIPEVI 506 (532)
Q Consensus 484 G~Tg~mVgi~n~~~~~vPi~ev~ 506 (532)
|+||+||+++|++++++||++++
T Consensus 302 g~~~~mv~~~~~~~~~~p~~~~~ 324 (324)
T TIGR02483 302 GQFGHMVALRGTDIVYVPIAEAV 324 (324)
T ss_pred CCCCeEEEEECCEEEEeeHHHhC
Confidence 99999999999999999999874
No 10
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=100.00 E-value=3.1e-82 Score=651.30 Aligned_cols=307 Identities=32% Similarity=0.485 Sum_probs=281.4
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc---
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP--- 251 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~--- 251 (532)
+||||+||||||||||++||++++++..+|+ +||||++||+||+++++ ++|+++.++.|+++|||+|||||..+
T Consensus 1 ~~IaIltsGG~apGmNa~i~~vv~~a~~~g~-~v~G~~~G~~GL~~~~~--~~l~~~~v~~~~~~gGt~LgtsR~~~~~~ 77 (317)
T cd00763 1 KRIGVLTSGGDAPGMNAAIRGVVRSAIAEGL-EVYGIRDGYAGLIAGDI--VPLDRYSVSDIINRGGTFLGSARFPEFKD 77 (317)
T ss_pred CEEEEEccCCCcHHHHHHHHHHHHHHHHCCC-EEEEEecCHHHhcCCCe--EeCCHHHhhhHHhCCCeeeccCCCCccCC
Confidence 4899999999999999999999999988999 79999999999999876 56899999999999999999999854
Q ss_pred --cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHH
Q 009559 252 --TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINS 329 (532)
Q Consensus 252 --~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~ 329 (532)
..++++++|++++||+||+||||||+++|++|+++ +++||||||||||||++||+|||||||+++++++|++
T Consensus 78 ~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~------~i~vigiPkTIDNDi~gtd~t~Gf~TA~~~~~~~i~~ 151 (317)
T cd00763 78 EEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEH------GFPCVGLPGTIDNDIPGTDYTIGFDTALNTVVEAIDR 151 (317)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHc------CCCEEEecccccCCCCCCccCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999984 5999999999999999999999999999999999999
Q ss_pred HHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhc-cCceEEEeeccccch
Q 009559 330 AYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIET-KGSAVVCVAEGAGQS 408 (532)
Q Consensus 330 a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~-kg~~VVVVAEGag~~ 408 (532)
++.+|.| ++||+|||+|||+|||||++++||++ ||+|||||.||+++ .+++.|++++++ ++|+|||||||+..
T Consensus 152 i~~ta~s-~~rv~ivEvMGR~~G~LA~~~ala~g-a~~iliPE~~~~~~---~~~~~i~~~~~~g~~~~vivvaEG~~~- 225 (317)
T cd00763 152 IRDTSSS-HQRISVVEVMGRHCGDIALAAGIAGG-AEFIVIPEAEFDRE---EVANRIKAGIERGKKHAIVVVAEGVYD- 225 (317)
T ss_pred HHHHHhc-CCCEEEEEeCCCChHHHHHHHHHHcC-CCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCCCC-
Confidence 9988876 68999999999999999999999998 99999999999976 899999998875 99999999999852
Q ss_pred hhcccccccCCCCccccchHHHHHHHHHHHHHhcCcceeEEEeCCCceeccCCCCchhHHHHHHhhHHHHHhHhcCCccE
Q 009559 409 LIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHGAFAGFSGI 488 (532)
Q Consensus 409 l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~~~vk~idpgy~iRs~~p~a~D~i~c~~LG~~AV~~a~aG~Tg~ 488 (532)
...|++.+++++ | +++|...|||+|||++|+++|+++|++||..||+++++|+||+
T Consensus 226 -------------------~~~l~~~l~~~~---g--~~~r~~~lG~~qRgg~p~~~Dr~~a~~lg~~Av~~~~~g~~~~ 281 (317)
T cd00763 226 -------------------VDELAKEIEEAT---G--FETRATVLGHIQRGGSPTAFDRILASRMGAYAVELLLAGKGGL 281 (317)
T ss_pred -------------------HHHHHHHHHHHh---C--CCcceeccchhhcCCCCChhhHHHHHHHHHHHHHHHHcCCCCe
Confidence 123667777664 4 4678888999999999999999999999999999999999999
Q ss_pred EEEEECCeeEEechhhHhcCCCcCCCCcHHHHHHH
Q 009559 489 TVGLCNTHYAYFPIPEVISYPRAVDPNSRMWHRCL 523 (532)
Q Consensus 489 mVgi~n~~~~~vPi~ev~~~~k~vd~~~~~w~~~l 523 (532)
||+++|++++++||+++++.+|.+++ .|.++.
T Consensus 282 mv~~~~~~~~~~pl~~~~~~~k~~~~---~~~~~~ 313 (317)
T cd00763 282 AVGIQNEQLVHHDIIDAIENMKPFKK---DWLALA 313 (317)
T ss_pred EEEEECCEEEEecHHHHhhCCCCCCH---HHHHHH
Confidence 99999999999999999998887876 455543
No 11
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=100.00 E-value=8.4e-82 Score=643.90 Aligned_cols=295 Identities=33% Similarity=0.517 Sum_probs=271.6
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc----
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP---- 251 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~---- 251 (532)
||||+||||+|||||++||++++++..+|+ +|||+++||+||+++++ ++|+++.+++|+++|||+|||||.++
T Consensus 1 rIaIltsGG~apG~Na~i~~vv~~a~~~g~-~v~G~~~G~~GL~~~~~--~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~ 77 (301)
T TIGR02482 1 KIGILTSGGDAPGMNAAIRAVVRTAIYHGF-EVYGIRRGYKGLINGEI--KPLESKNVSGIIHRGGTILGTARCPEFKTE 77 (301)
T ss_pred CEEEEccCCCcHHHHHHHHHHHHHHHHCCC-EEEEEecCHHHhcCCCe--EeCCHHHHhhHHhCCCceeccCCCCccCCH
Confidence 699999999999999999999999988898 79999999999999986 56899999999999999999999864
Q ss_pred -cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHHH
Q 009559 252 -TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSA 330 (532)
Q Consensus 252 -~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~a 330 (532)
+.++++++|++++||+||+|||||||++|++|+++ .+++||||||||||||++||+|||||||+++++++|+++
T Consensus 78 ~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~-----~~i~vigiPkTIDNDl~~td~s~GfdTA~~~~~~~i~~i 152 (301)
T TIGR02482 78 EGRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEE-----GGIPVIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDKI 152 (301)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHh-----hCCCEEeecccccCCCcCcccCcChhHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999986 479999999999999999999999999999999999999
Q ss_pred HHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhc-cCceEEEeeccccchh
Q 009559 331 YIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIET-KGSAVVCVAEGAGQSL 409 (532)
Q Consensus 331 ~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~-kg~~VVVVAEGag~~l 409 (532)
+++|.| ++||+|||+|||+|||||++++||++ ||+|||||+||+++ .++++|+++++. ++|+|||||||+..
T Consensus 153 ~~ta~s-~~rv~ivEvMGR~~G~lAl~~~la~g-ad~iliPE~~~~~~---~l~~~i~~r~~~g~~~~iIvvaEG~~~-- 225 (301)
T TIGR02482 153 RDTATS-HERAFVIEVMGRHAGDLALYSGIATG-AEIIIIPEFDYDID---ELIQRLKEQHEAGKKHSIIIVAEGNIV-- 225 (301)
T ss_pred HHHhhc-CCCEEEEEeCCCCHHHHHHHHHHHcC-CCEEEECCCCCCHH---HHHHHHHHHHHcCCCeEEEEEeCCCcC--
Confidence 999976 67899999999999999999999998 99999999999986 899999999875 99999999999521
Q ss_pred hcccccccCCCCccccchHHHHHHHHHHHHHhcCcceeEEEeCCCceeccCCCCchhHHHHHHhhHHHHHhHhcCCccEE
Q 009559 410 IKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHGAFAGFSGIT 489 (532)
Q Consensus 410 ~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~~~vk~idpgy~iRs~~p~a~D~i~c~~LG~~AV~~a~aG~Tg~m 489 (532)
+. +..|+++|++++ | +++|+..|||+|||++|+++|+++|++||..||+++++|+||+|
T Consensus 226 ---------------~~-~~~l~~~l~~~~---g--~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~~~m 284 (301)
T TIGR02482 226 ---------------GS-AKEVAKKIEEAT---G--IETRVTVLGHTQRGGSPTAFDRVLASRLGAKAVELLLEGKGGVM 284 (301)
T ss_pred ---------------Cc-HHHHHHHHHHhc---C--CeeEEeecChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence 00 245777776653 4 57888999999999999999999999999999999999999999
Q ss_pred EEEECCeeEEechhhHh
Q 009559 490 VGLCNTHYAYFPIPEVI 506 (532)
Q Consensus 490 Vgi~n~~~~~vPi~ev~ 506 (532)
|++++++++++||++++
T Consensus 285 v~~~~~~~~~~p~~~~~ 301 (301)
T TIGR02482 285 IGIQNNKIVTHPIEEAL 301 (301)
T ss_pred EEEECCEEEEeeHHHhC
Confidence 99999999999999874
No 12
>PRK03202 6-phosphofructokinase; Provisional
Probab=100.00 E-value=4.1e-80 Score=636.38 Aligned_cols=301 Identities=33% Similarity=0.515 Sum_probs=279.2
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc---
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP--- 251 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~--- 251 (532)
+||||+||||||||||++|+++++++..+|+ +||||++||+||+++++ ++|+++.|+.|.++|||+|||||..+
T Consensus 2 k~i~Il~sGG~apG~Na~i~~~~~~~~~~g~-~v~g~~~G~~GL~~~~~--~~l~~~~v~~~~~~gGs~LgtsR~~~~~~ 78 (320)
T PRK03202 2 KRIGVLTSGGDAPGMNAAIRAVVRTAISEGL-EVYGIYDGYAGLLEGDI--VKLDLKSVSDIINRGGTILGSARFPEFKD 78 (320)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHHHCCC-eEEEEecChhhhcCCCE--EECCHHHHhhHHhCCCcccccCCCCCcCC
Confidence 5899999999999999999999999988898 79999999999999976 56899999999999999999999865
Q ss_pred --cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHH
Q 009559 252 --TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINS 329 (532)
Q Consensus 252 --~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~ 329 (532)
+.++++++|++++||+|++||||||+++|++|+| .+++|||||||||||+++||+|||||||+++++++|++
T Consensus 79 ~~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e------~~i~vigiPkTIDNDl~gtd~s~Gf~TA~~~~~~~i~~ 152 (320)
T PRK03202 79 EEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTE------HGIPVIGLPGTIDNDIAGTDYTIGFDTALNTAVEAIDR 152 (320)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHh------cCCcEEEecccccCCCCCCccCcCHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999996 37999999999999999999999999999999999999
Q ss_pred HHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhc-cCceEEEeeccccch
Q 009559 330 AYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIET-KGSAVVCVAEGAGQS 408 (532)
Q Consensus 330 a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~-kg~~VVVVAEGag~~ 408 (532)
++.+|.| ++||+|||+|||+|||||++++||++ ||+|||||.||+++ .+++.|+++++. ++|+|||||||+.+.
T Consensus 153 l~~~a~s-~~rv~iVEvMGR~~G~LAl~~ala~~-a~~iliPE~~~~~~---~l~~~i~~r~~~g~~~~vivvsEg~~~~ 227 (320)
T PRK03202 153 LRDTASS-HERVFIVEVMGRHAGDLALHAGIAGG-AEVILIPEVPFDIE---ELCAKIKKGRERGKKHAIIVVAEGVMPA 227 (320)
T ss_pred HHHHHhc-cCCEEEEEECCCChHHHHHHHHHhcC-CCEEEeCCCCCCHH---HHHHHHHHHHHhcCCcEEEEEeCCCCCH
Confidence 9999987 68999999999999999999999998 99999999999976 899999999875 999999999999631
Q ss_pred hhcccccccCCCCccccchHHHHHHHHHHHHHhcCcceeEEEeCCCceeccCCCCchhHHHHHHhhHHHHHhHhcCCccE
Q 009559 409 LIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHGAFAGFSGI 488 (532)
Q Consensus 409 l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~~~vk~idpgy~iRs~~p~a~D~i~c~~LG~~AV~~a~aG~Tg~ 488 (532)
..|++.|++++ + +++|+..|||+|||++|+++|+++|++||..||+++++|+||+
T Consensus 228 --------------------~~l~~~i~~~~---~--~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~~~ 282 (320)
T PRK03202 228 --------------------EELAKEIEERT---G--LETRVTVLGHIQRGGSPTAFDRVLASRMGAHAVELLLEGKGGR 282 (320)
T ss_pred --------------------HHHHHHHHHHh---C--CceEEcccchhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Confidence 23777777765 4 5789999999999999999999999999999999999999999
Q ss_pred EEEEECCeeEEechhhHh-cCCCcCCC
Q 009559 489 TVGLCNTHYAYFPIPEVI-SYPRAVDP 514 (532)
Q Consensus 489 mVgi~n~~~~~vPi~ev~-~~~k~vd~ 514 (532)
||+++++++.++||++++ +++|.+++
T Consensus 283 ~v~~~~~~~~~vpl~~v~~~~~~~~~~ 309 (320)
T PRK03202 283 MVGIQNNKIVHVPIEEAVENMKHPFDK 309 (320)
T ss_pred EEEEECCEEEEEeHHHHHhcCCCCCCH
Confidence 999999999999999999 76666654
No 13
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-78 Score=629.16 Aligned_cols=328 Identities=34% Similarity=0.476 Sum_probs=284.7
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc--
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP-- 251 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~-- 251 (532)
.+||||+||||||||||+|||++|+++...|+ +||||++||+||+++++ ++|+++.|++++++|||+|||||.+.
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~~g~-eV~Gi~~Gy~GL~~~~i--~~l~~~~v~~~~~~GGT~lgssR~~~~~ 78 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIKEGL-EVFGIYNGYLGLLEGDI--KPLTREDVDDLINRGGTFLGSARFPEFK 78 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHcCC-EEEEEecchhhhcCCcc--eeccccchhHHHhcCCeEEeeCCCCCcc
Confidence 47999999999999999999999999988898 79999999999999986 56899999999999999999999875
Q ss_pred ---cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHH
Q 009559 252 ---TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAIN 328 (532)
Q Consensus 252 ---~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~ 328 (532)
..++++++|+++|||+|++||||||+.+|..|+|+. +++|||||||||||+++||+|||||||+++++++|+
T Consensus 79 ~~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~-----~i~vVGvPkTIDNDi~~td~tiGfdTA~~~~~eaid 153 (347)
T COG0205 79 TEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEG-----GIPVVGVPKTIDNDISGTDFTIGFDTALETAVEAID 153 (347)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhc-----CCcEEecCCCccCCCcccccCccHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999974 599999999999999999999999999999999999
Q ss_pred HHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHH--hccCceEEEeecccc
Q 009559 329 SAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLI--ETKGSAVVCVAEGAG 406 (532)
Q Consensus 329 ~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~--~~kg~~VVVVAEGag 406 (532)
+++.+| |+|+|++|||||||+|||||++|+||++ +|+|+|||.+|++ -...++..+++.. +++.|++|||+||+.
T Consensus 154 ~l~dta-ssh~r~~iveVMGR~aG~lAl~aglA~~-a~~ilipE~~~~~-~i~~~~~~i~~~~~~~gk~~~iIvvaEG~~ 230 (347)
T COG0205 154 NLRDTA-SSHERIFIVEVMGRHAGWLALAAGLATG-ADIILIPEEPADL-IIEELIAEIKAKREARGKKHAIIVVAEGAI 230 (347)
T ss_pred HHHHHH-hCcCCEEEEEecCcChhHHHHHHHHhcC-CCEEEecCccccc-hHHHHHHHHHHHHHHhCCCceEEEEccccc
Confidence 999544 6689999999999999999999999998 9999999999987 2336777777643 578999999999998
Q ss_pred chhhcccccccCCCCccccchHHHHHHHHHHHHHhcCcceeEEEeCCCceeccCCCCchhHHHHHHhhHHHHHhHhcCCc
Q 009559 407 QSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHGAFAGFS 486 (532)
Q Consensus 407 ~~l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~~~vk~idpgy~iRs~~p~a~D~i~c~~LG~~AV~~a~aG~T 486 (532)
..+.+ +|+ .+...+++++... ..++|...+||+|||+.|+++|++||++||..||+++++|++
T Consensus 231 ~~~~~-------~~~--------~~~~~i~~~~~~~--~~~~r~t~LGhiqRgg~p~~fDr~~a~~lG~~AV~~l~~g~~ 293 (347)
T COG0205 231 DQIGE-------NGA--------ELLAAIEELLALG--DFETRVTVLGHIQRGGTPSAFDRVLASRLGAAAVDLLLEGKT 293 (347)
T ss_pred ccccc-------chh--------hHHHHHHHHhhhc--ccceEEEeccccccCCCCchHHHHHHHHHHHHHHHHHHcCCC
Confidence 64321 333 3444455554221 157899999999999999999999999999999999999999
Q ss_pred cEEEEEECCeeEEechhhHhcCCCcCC----CCcHHHHHHHHhcCCC
Q 009559 487 GITVGLCNTHYAYFPIPEVISYPRAVD----PNSRMWHRCLTSTGQP 529 (532)
Q Consensus 487 g~mVgi~n~~~~~vPi~ev~~~~k~vd----~~~~~w~~~l~~tgQp 529 (532)
|.||+++|+++++.|+.+.+...+.+. ++...|.++++...++
T Consensus 294 ~~~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 340 (347)
T COG0205 294 GYMVGIRNNKIVHVPIDEAVAPLKMVMSLEEPDRSIKLDLVDLAKRL 340 (347)
T ss_pred CceEEEeCCeeEeehhHhhhhhhhhhhcccccCcchhhHHHhhhhhh
Confidence 999999999999999999887665432 2233677776665443
No 14
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=100.00 E-value=1.7e-76 Score=643.12 Aligned_cols=350 Identities=22% Similarity=0.344 Sum_probs=304.0
Q ss_pred CCCcEEEEEeCCCCcchHHHHHHHHHHHHHHc-CCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCc-ceecccC
Q 009559 172 PEEVKAAIVTCGGLCPGLNDVIRHIVITLEIY-GVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGS-LLGVSRG 249 (532)
Q Consensus 172 p~~~kiaIvt~GG~cPGlNavIr~iv~~l~~y-gv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGS-iLGTSR~ 249 (532)
+..+||||+||||+|||||+||+++++++..+ ...+||||++||+||+++++ ++||++.|+.|+++||| +|||||+
T Consensus 65 ~~~~rIgIl~sGG~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~--~~Lt~~~v~~~~~~GG~~~LGssR~ 142 (539)
T TIGR02477 65 HQPLKIGVILSGGQAPGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLDNNY--VELTKELIDTYRNTGGFDIIGSGRT 142 (539)
T ss_pred ccceEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEecChHHhcCCCe--EeCCHHHHhHHHhCCCchhhcCCCC
Confidence 45589999999999999999999999998643 33479999999999999986 66999999999999996 9999998
Q ss_pred Cc----cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCC--CCCccCChhhHHHHH
Q 009559 250 AP----TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDIL--LMDKTFGFDTAVEEA 323 (532)
Q Consensus 250 ~~----~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~--~tD~SfGFdTAv~~a 323 (532)
+. +.++++++|++++||+||+||||||+++|..|++++++++++|+|||||||||||++ +||+|||||||++++
T Consensus 143 k~~~~e~~~~~~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~~~~td~s~GFdTA~~~~ 222 (539)
T TIGR02477 143 KIETEEQFAKALTTAKKLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKIY 222 (539)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHH
Confidence 75 578899999999999999999999999999999999999999999999999999998 599999999999999
Q ss_pred HHHHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCC----CCCC-hhHHHHHHHHHHh-ccCce
Q 009559 324 QRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPF----NLHG-PNGVLRHLKYLIE-TKGSA 397 (532)
Q Consensus 324 ~~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf----~leg-~~~ll~~lk~~~~-~kg~~ 397 (532)
+++|+++..||.|++++|+|||+|||+|||||++||||++ ||+|||||+++ +++. .+.+++.|.+|.. +++|+
T Consensus 223 ~~~I~~i~~Da~s~~~~~~~VevMGR~aG~LAl~~aLat~-~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~g 301 (539)
T TIGR02477 223 SELIGNICRDALSAKKYWHFIRLMGRSASHIALECALQTH-PNVCIIGEEVAAKKMTLSQLTDYIADVIVKRAAKGKNFG 301 (539)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHhcC-CCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCCE
Confidence 9999999999999988999999999999999999999997 99999999987 4432 3566667777664 69999
Q ss_pred EEEeeccccc------hhh------------------------cc-c----------------ccccCCCCccccch--H
Q 009559 398 VVCVAEGAGQ------SLI------------------------KK-T----------------NATDASGNIVLGDV--G 428 (532)
Q Consensus 398 VVVVAEGag~------~l~------------------------~~-~----------------~~~DasGn~~l~dI--g 428 (532)
|||||||+.. .++ .. + ..+|++||+++++| +
T Consensus 302 vIvvsEGlie~ipe~~~Li~el~~~l~~~~~~~~~~~~i~~~ls~~s~~l~~~lp~~i~~qLl~~~D~~G~~~ls~i~te 381 (539)
T TIGR02477 302 VILIPEGLIEFIPEVQALIKELNNLLAQNVLEEGRKDNVQSKLSPSSKALFESLPEFIRHQLLLDRDPHGNVQVSQIETE 381 (539)
T ss_pred EEEEeCCchhhcchHHHHHHHHHhhhhcccccchhhhhhhhhcCHhHHHHHhhcchhHHHhhccCcCCCCCeeeccccHH
Confidence 9999999943 111 00 0 14799999999999 7
Q ss_pred HHHHHHHHHHHHhcCc--ceeEEEe----CCCceeccCCCCchhHHHHHHhhHHHHHhHhcCCccEEEEEECC-------
Q 009559 429 VLIQQETKKYFKEIGV--PIDVKYI----DPTYMIRACRANASDGILCTVLGQNAVHGAFAGFSGITVGLCNT------- 495 (532)
Q Consensus 429 ~~L~~~I~~~f~~~g~--~~~vk~i----dpgy~iRs~~p~a~D~i~c~~LG~~AV~~a~aG~Tg~mVgi~n~------- 495 (532)
..|++.+++++.+.+. +++.|++ .+||++||+.|+.+|+.||+.||+.|++++++|+||+|++++|.
T Consensus 382 ~lL~~lV~~~l~~~~~~~~~k~~f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~~~~G~tG~m~~i~~l~~~~~~w 461 (539)
T TIGR02477 382 KLLIELVQTELNKRKKEGEYKGKFSAVSHFFGYEGRCAFPSNFDSDYCYALGYTAAILLANGLTGYMSTIKNLTNPAEEW 461 (539)
T ss_pred HHHHHHHHHHHHhhhccccceeEEeecccccCcccccCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCccee
Confidence 8899999888764432 2566776 67999999999999999999999999999999999999999983
Q ss_pred eeEEechhhHhcC------------CCcCCCCcHHHHHHHH
Q 009559 496 HYAYFPIPEVISY------------PRAVDPNSRMWHRCLT 524 (532)
Q Consensus 496 ~~~~vPi~ev~~~------------~k~vd~~~~~w~~~l~ 524 (532)
++..+|+.++++. ++.||+++..++.+..
T Consensus 462 ~~~~vPl~~~~n~e~~~g~~~p~i~~~~Vdl~~~~f~~~~~ 502 (539)
T TIGR02477 462 IAGGVPLTMMMNMERRHGEMKPVIKKALVDLEGKPFKKFAS 502 (539)
T ss_pred eEecccHHHHhChhhhCCCCCccceeeeeCCCCHHHHHHHH
Confidence 2377999999863 3468888877765543
No 15
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=5e-76 Score=659.78 Aligned_cols=329 Identities=26% Similarity=0.371 Sum_probs=290.5
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc---
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP--- 251 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~--- 251 (532)
+||||+||||||||||++||++|+++..+|+ +||||++||+||+++....++|+++.|++|+++|||+|||||.++
T Consensus 1 krIaIltsGGdapGmNaaIravv~~a~~~g~-~V~gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~LGtsR~~~~~~ 79 (745)
T TIGR02478 1 KRIGVLTSGGDAQGMNAAVRAVVRMAIYVGC-RVYAIREGYQGLVDGGDNIEEANWEDVRGILSLGGTIIGTARCKEFRE 79 (745)
T ss_pred CEEEEEecCCCcHHHHHHHHHHHHHHHHCCC-EEEEEecCHHHHhcCCCCeEECCHHHHhhHHhCCCceecCCCCCcccC
Confidence 4899999999999999999999999998998 799999999999998222366999999999999999999999875
Q ss_pred --cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHH-----------------HHHhcCCCceEeeeecccccCCCCCCc
Q 009559 252 --TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHN-----------------ECRKRRMKVAVVGVPKTIDNDILLMDK 312 (532)
Q Consensus 252 --~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~e-----------------e~~kr~~~I~VIGIPKTIDNDI~~tD~ 312 (532)
...+++++|++++||+||+||||||+++|+.|++ ++++++.+++|||||||||||+++||+
T Consensus 80 ~~~~~~~~~~L~~~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gTd~ 159 (745)
T TIGR02478 80 RPGRLKAARNLIKRGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTDM 159 (745)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCCcC
Confidence 3478999999999999999999999999997665 456677899999999999999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHH-H
Q 009559 313 TFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYL-I 391 (532)
Q Consensus 313 SfGFdTAv~~a~~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~-~ 391 (532)
|||||||+++++++|++++.+|.| ++|++|||||||+|||||+++|||++ ||+|||||.||+.+.++.+++.++++ .
T Consensus 160 TiGfdTA~~~i~~aid~i~~ta~S-h~R~fvvEvMGR~~G~LAl~aalA~g-ad~iliPE~~~~~~~~~~i~~~l~~~~~ 237 (745)
T TIGR02478 160 TIGADSALHRICEAIDAISSTAQS-HQRAFVVEVMGRHCGYLALMAAIATG-ADYVFIPERPPEEGWEDQLCHKLKRNRK 237 (745)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhc-cCCEEEEEEcCccccHHHHHHHhccC-CCEEEecCCCCCchHHHHHHHHHHHHHH
Confidence 999999999999999999999987 68999999999999999999999998 99999999999976666788888775 4
Q ss_pred hccCceEEEeeccccchhhcccccccCCCCccccchHHHHHHHHHHHHHhcCcceeEEEeCCCceeccCCCCchhHHHHH
Q 009559 392 ETKGSAVVCVAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILCT 471 (532)
Q Consensus 392 ~~kg~~VVVVAEGag~~l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~~~vk~idpgy~iRs~~p~a~D~i~c~ 471 (532)
++++|+|||||||+. |++||+.. ..+|++.|++.+ | .++|+..|||+|||++|+++|+++|+
T Consensus 238 ~gk~~~iIvvaEG~~----------d~~g~~i~---~~~l~~~l~~~~---g--~~~R~~~LGh~QRgg~Psa~Dr~la~ 299 (745)
T TIGR02478 238 AGKRKNIVIVAEGAI----------DRDLNPIT---SEDVKDVLVERL---G--LDTRITVLGHVQRGGAPSAYDRILAT 299 (745)
T ss_pred cCCCcEEEEEeCCcc----------cccCCccc---HHHHHHHHHHhc---C--CceEEeecChhhcCCCCCHHHHHHHH
Confidence 578999999999994 44566432 245777776653 4 46888899999999999999999999
Q ss_pred HhhHHHHHhHhcCCc---cEEEEEECCeeEEechhhHhcCCCcCCCC--cHHHHHHHH
Q 009559 472 VLGQNAVHGAFAGFS---GITVGLCNTHYAYFPIPEVISYPRAVDPN--SRMWHRCLT 524 (532)
Q Consensus 472 ~LG~~AV~~a~aG~T---g~mVgi~n~~~~~vPi~ev~~~~k~vd~~--~~~w~~~l~ 524 (532)
+||..||+++++|.+ ++||++++++++++||+++++++|.|+.. ...|...++
T Consensus 300 ~~G~~Av~~~~~g~~~~~~~mv~~~~~~~~~~pl~~~~~~~k~v~~~~~~~~~~~a~~ 357 (745)
T TIGR02478 300 RQGVEAVLAVLESTPETPSPVISLRGNKIVRKPLVEAVAQTKTVAKAIKEKRFAEAMR 357 (745)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEEECCEEEEEeHHHHHhhcCCCCHHHHhccHHHHHH
Confidence 999999999999998 99999999999999999999999988753 333444443
No 16
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=6.8e-76 Score=658.74 Aligned_cols=343 Identities=21% Similarity=0.289 Sum_probs=298.0
Q ss_pred hhhcCCCccccc-CCCCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhh
Q 009559 159 VHRAGPREEIYF-KPEEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIH 237 (532)
Q Consensus 159 ~~~agpr~~i~f-~p~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~ 237 (532)
..++.|+....+ ..+.+||||+||||||||||++||++|+++..+|+ +||||++||+||+++++ .+|++..|++|+
T Consensus 373 ~~~~~~~~~~~~~~~~~~rIaIltsGG~apGmNaair~vv~~a~~~g~-~V~Gi~~G~~GL~~~~~--~~l~~~~v~~~~ 449 (745)
T TIGR02478 373 LSIPDQDKKLVPSKASRLRIAIIHVGAPAGGMNAATRSAVRYAIARGH-TVIAIHNGFSGLARGDV--RELTWSDVEGWV 449 (745)
T ss_pred hhccCCccccCCCCCCceEEEEEecCCCchhHHHHHHHHHHHHHhCCC-EEEEEecChhhhccCCe--ecCCHHHHHHHH
Confidence 345677776555 45568999999999999999999999999988998 79999999999999985 568999999999
Q ss_pred hcCCcceecccCCc--cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHh-cCCCceEeeeecccccCCCCCCccC
Q 009559 238 LSGGSLLGVSRGAP--TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRK-RRMKVAVVGVPKTIDNDILLMDKTF 314 (532)
Q Consensus 238 ~~GGSiLGTSR~~~--~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~k-r~~~I~VIGIPKTIDNDI~~tD~Sf 314 (532)
++|||+|||||+.+ +.++++++|++++||+||+||||||+++|.+|+++..+ ++++|+||||||||||||++||+||
T Consensus 450 ~~GGt~LgtsR~~~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd~t~ 529 (745)
T TIGR02478 450 GEGGSELGTNRELPGKDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEYSL 529 (745)
T ss_pred hcCCcccccCCCCchhHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCccCC
Confidence 99999999999864 78999999999999999999999999999999987433 3467999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhc-
Q 009559 315 GFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIET- 393 (532)
Q Consensus 315 GFdTAv~~a~~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~- 393 (532)
|||||+++++++|++++++|.|+++||+|||+|||+|||||+++|||+| ||+|||||+||++++..+.+++++++++.
T Consensus 530 GfdTA~~~~~~~id~i~~ta~s~~~rv~iVEvMGR~~G~LAl~~alA~g-ad~iliPE~~~~~~~l~~~v~~i~~~~~~~ 608 (745)
T TIGR02478 530 GSDTALNEITEYCDNIKQSASASKRRVFVVETMGGYSGYLATMAGLATG-ADAAYIPEEGISLKDLQEDIEHLKEKFAHG 608 (745)
T ss_pred CHHHHHHHHHHHHHHHHHhhHhcCCcEEEEEecCccccHHHHHHHhhcC-CCEEEeCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999878999999999999999999999998 99999999999987443444466666653
Q ss_pred -cCceEEEeeccccchhhcccccccCCCCccccchHHHHHHHHHHHHHhcCcceeEEEeCCCceeccCCCCchhHHHHHH
Q 009559 394 -KGSAVVCVAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILCTV 472 (532)
Q Consensus 394 -kg~~VVVVAEGag~~l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~~~vk~idpgy~iRs~~p~a~D~i~c~~ 472 (532)
+.+.+||++||+...+ ....|++.+++.. +..+++|+.+|||+|||+.|+++|+++|++
T Consensus 609 ~~~~~iiv~~Eg~~~~~-----------------~~~~l~~~i~~e~---~~~~~~R~~~LG~~QRgg~ps~~Dr~~a~~ 668 (745)
T TIGR02478 609 NRAGKLILRNENASKNY-----------------TTDFIARIISEEA---KGRFDARTAVLGHMQQGGSPSPFDRNRATR 668 (745)
T ss_pred CCCceEEEEeCCCccCC-----------------CHHHHHHHHHHHh---cCCCceEeccCCccccCCCCCHHHHHHHHH
Confidence 5789999999973211 1345666665443 223679999999999999999999999999
Q ss_pred hhHHHHHhHhcC------------CccEEEEEECCeeEEechhhHhcCC---CcCCCCcHHHHHHHHh
Q 009559 473 LGQNAVHGAFAG------------FSGITVGLCNTHYAYFPIPEVISYP---RAVDPNSRMWHRCLTS 525 (532)
Q Consensus 473 LG~~AV~~a~aG------------~Tg~mVgi~n~~~~~vPi~ev~~~~---k~vd~~~~~w~~~l~~ 525 (532)
||..||+++++| +|++|||++|++++++||+++.+.. .+..|+..||..+...
T Consensus 669 lG~~Av~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~p~~~~~~~~~d~~~r~p~~~~w~~~~~~ 736 (745)
T TIGR02478 669 LAIRAVDFIEEKIKKSADKLGADDTSAVVIGIRGSNVLFTPVKGLLAKETDFEHRRPKNQWWLDLRPL 736 (745)
T ss_pred HHHHHHHHHHhCCcccccccccCCCccEEEEEECCEEEEEEHHHHHhhccCcccCCCCCchhhhHHHH
Confidence 999999999998 7999999999999999999855432 4566889999987654
No 17
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=7.7e-76 Score=656.48 Aligned_cols=319 Identities=25% Similarity=0.347 Sum_probs=283.6
Q ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc-
Q 009559 173 EEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP- 251 (532)
Q Consensus 173 ~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~- 251 (532)
..+||||+||||||||||++||++|+++..+|+ +||||++||+||++++....+|+|+.|++|+++|||+|||||+++
T Consensus 2 ~~k~IaIltSGGdapGmNaaIravvr~a~~~g~-~V~gi~~Gy~GL~~g~~~i~~l~~~~V~~i~~~GGT~LGTsR~~~f 80 (762)
T cd00764 2 AGKAIAVLTSGGDAQGMNAAVRAVVRMGIYVGA-KVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQEGGTIIGSARCKEF 80 (762)
T ss_pred CCcEEEEEccCCCchhHhHHHHHHHHHHHHCCC-EEEEEecCHHHHhCCCCCceeCCHHHHHHHHhCCCCcccCCCCCcc
Confidence 457999999999999999999999999999999 799999999999998544466999999999999999999999875
Q ss_pred ----cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHH-----------------HHHHhcCCCceEeeeecccccCCCCC
Q 009559 252 ----TVSEIVDSMEERGINMLFVLGGNGTHAGANAIH-----------------NECRKRRMKVAVVGVPKTIDNDILLM 310 (532)
Q Consensus 252 ----~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~-----------------ee~~kr~~~I~VIGIPKTIDNDI~~t 310 (532)
...+++++|++++||+||+||||||+++|+.|. +++++++..++|||||||||||+++|
T Consensus 81 ~~~e~~~~a~~~L~~~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~gT 160 (762)
T cd00764 81 REREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCGT 160 (762)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCCCC
Confidence 357899999999999999999999999999654 45566777899999999999999999
Q ss_pred CccCChhhHHHHHHHHHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHH
Q 009559 311 DKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYL 390 (532)
Q Consensus 311 D~SfGFdTAv~~a~~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~ 390 (532)
|+|||||||++.++++|++++.+|.| ++|+||||||||+|||||++++||++ ||+|||||.||+....+.+++.++++
T Consensus 161 D~TiGfdTAl~~i~eaId~i~~tA~S-h~R~fVVEvMGR~~G~LAl~aglA~g-Ad~ilIPE~p~~~~~~~~i~~~l~~~ 238 (762)
T cd00764 161 DMTIGTDSALHRICEVVDAITTTAQS-HQRTFVLEVMGRHCGYLALVSGLATG-ADWIFIPERPPEDGWEDQMCRRLSEH 238 (762)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHh-cCCEEEEEECCCCchHHHHHHHhccC-CCEEEecCCCCchhHHHHHHHHHHHH
Confidence 99999999999999999999999987 57899999999999999999999998 99999999999933345666777665
Q ss_pred H-hccCceEEEeeccccchhhcccccccCCCCccccchHHHHHHHHHHHHHhcCcceeEEEeCCCceeccCCCCchhHHH
Q 009559 391 I-ETKGSAVVCVAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGIL 469 (532)
Q Consensus 391 ~-~~kg~~VVVVAEGag~~l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~~~vk~idpgy~iRs~~p~a~D~i~ 469 (532)
. .+|+++|||||||+. |..|++.. ..+|++.|++++ | +++|+..|||+|||+.|+++|+++
T Consensus 239 ~~~gk~~~iIVVaEGa~----------d~~g~~i~---~~~l~~~l~~~~---g--~d~R~t~LGh~QRGG~Psa~Dr~l 300 (762)
T cd00764 239 RSRGKRLNIIIVAEGAI----------DDQLKPIT---SEDVKDLVVERL---G--LDTRVTTLGHVQRGGTPSAFDRIL 300 (762)
T ss_pred HhcCCCcEEEEEeCCCc----------cccCCCcc---HHHHHHHHHHhc---C--CCeeEeecChhhcCCCCCHHHHHH
Confidence 4 368999999999995 33455432 245777776653 5 468888999999999999999999
Q ss_pred HHHhhHHHHHhHhcCCc---cEEEEEECCeeEEechhhHhcCCCcC
Q 009559 470 CTVLGQNAVHGAFAGFS---GITVGLCNTHYAYFPIPEVISYPRAV 512 (532)
Q Consensus 470 c~~LG~~AV~~a~aG~T---g~mVgi~n~~~~~vPi~ev~~~~k~v 512 (532)
|++||..||+++++|.+ ++||+++|++++++||.++++.+|.|
T Consensus 301 a~~~G~~AV~~l~~g~~~~~~~~i~~~~~~i~~~pl~e~v~~~k~v 346 (762)
T cd00764 301 ASLMGVEAVMALLEATPDTPACVVSLNGNKAVRLPLMECVQLTKDV 346 (762)
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEECCEEEEEEHHHHHhhccch
Confidence 99999999999999986 89999999999999999999998877
No 18
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=4.3e-75 Score=633.40 Aligned_cols=345 Identities=23% Similarity=0.353 Sum_probs=299.9
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHH--HcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCc-ceecccCC
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLE--IYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGS-LLGVSRGA 250 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~--~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGS-iLGTSR~~ 250 (532)
.+||||+||||+|||||+||+++++++. ..+. +||||++||+||+++++ ++|+++.|+.|+++||+ +|||||++
T Consensus 70 ~~~IgIl~sGG~aPG~N~vI~gv~~~~~~~~~~~-~v~G~~~G~~GLl~~~~--~~Lt~~~v~~~~~~GG~~~LGssR~k 146 (555)
T PRK07085 70 PLKVGVILSGGQAPGGHNVIAGLFDGLKKLNPDS-KLFGFIGGPLGLLNGKY--IEITEEVIDEYRNTGGFDMIGSGRTK 146 (555)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHHhcCCC-EEEEEecChHHhcCCCe--EECCHHHHhHHHhCCChhhhcCCCCC
Confidence 4799999999999999999999999774 3445 79999999999999986 66999999999999998 99999987
Q ss_pred c----cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCC--CCCccCChhhHHHHHH
Q 009559 251 P----TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDIL--LMDKTFGFDTAVEEAQ 324 (532)
Q Consensus 251 ~----~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~--~tD~SfGFdTAv~~a~ 324 (532)
. +.++++++|++++||+||+||||||+++|+.|++++++++.+|+|||||||||||++ +||+|||||||+++++
T Consensus 147 ~~~~e~~~~i~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTIDNDl~~~~id~s~GFdTA~~~~~ 226 (555)
T PRK07085 147 IETEEQKEACLETVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTATKTYS 226 (555)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeecCCCCCCcccccCCHHHHHHHHH
Confidence 5 468999999999999999999999999999999999999999999999999999999 5699999999999999
Q ss_pred HHHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCC----CCCCC-hhHHHHHHHHHH-hccCceE
Q 009559 325 RAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESP----FNLHG-PNGVLRHLKYLI-ETKGSAV 398 (532)
Q Consensus 325 ~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~p----f~leg-~~~ll~~lk~~~-~~kg~~V 398 (532)
++|++++.||.|++++|+|||+|||+|||||+++|||++ ||+|||||++ ++++. .+.+++.|.+|. ++++|+|
T Consensus 227 ~~I~~i~~Da~s~~~~~~~VevMGR~aG~LAl~~aLat~-~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gv 305 (555)
T PRK07085 227 EMIGNISRDALSAKKYWHFIKLMGRSASHIALECALQTH-PNICLISEEVAEKKMSLQDIVHYIASVIADRAAKGKNYGV 305 (555)
T ss_pred HHHHHHHHHHHhcCCcEEEEEECCCChHHHHHHHHHhcC-CCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 999999999999988999999999999999999999987 9999999994 45442 223344445544 4789999
Q ss_pred EEeeccccchh------------------------------------hcc-c----------------ccccCCCCcccc
Q 009559 399 VCVAEGAGQSL------------------------------------IKK-T----------------NATDASGNIVLG 425 (532)
Q Consensus 399 VVVAEGag~~l------------------------------------~~~-~----------------~~~DasGn~~l~ 425 (532)
||||||+...+ +.+ + ..+|++||++++
T Consensus 306 IvvsEGlie~ipe~~~li~el~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~~s~~l~~~lp~~i~~qLl~~rD~~Gn~~ls 385 (555)
T PRK07085 306 ILIPEGLIEFIPEMKSLIKELNSLLAENESEFKGLDTEAQREYIISKLSPESAKLFKSLPEDIARQLLLDRDPHGNVQVS 385 (555)
T ss_pred EEEeCCchhcCchHHHHHHHHHHhhhhcccccccccchhhhhhhhhhcCHHHHHHHhhcchhhhhhhccCcCCCCCeeec
Confidence 99999996310 000 0 147999999999
Q ss_pred ch--HHHHHHHHHHHHHhcCc------ceeEEEeCCCceeccCCCCchhHHHHHHhhHHHHHhHhcCCccEEEEEECC--
Q 009559 426 DV--GVLIQQETKKYFKEIGV------PIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHGAFAGFSGITVGLCNT-- 495 (532)
Q Consensus 426 dI--g~~L~~~I~~~f~~~g~------~~~vk~idpgy~iRs~~p~a~D~i~c~~LG~~AV~~a~aG~Tg~mVgi~n~-- 495 (532)
+| +..|.++|++++++.+. ++..+...+||++||+.|+.+|+.||+.||+.|++++++|+||+|++++|.
T Consensus 386 ~i~te~lL~~lV~~~l~~~k~~g~y~~~f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~~~~~G~tG~m~~i~~l~~ 465 (555)
T PRK07085 386 KIETEKLLIEMVKKELEKLKPEGKYKGPFSAISHFFGYEGRSAFPSNFDADYCYALGYTAALLILNGKTGYMSTIKNLTS 465 (555)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccccceeeeeecCChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCC
Confidence 99 88999999998865333 366777889999999999999999999999999999999999999999983
Q ss_pred -----eeEEechhhHhcCC------------CcCCCCcHHHHHH
Q 009559 496 -----HYAYFPIPEVISYP------------RAVDPNSRMWHRC 522 (532)
Q Consensus 496 -----~~~~vPi~ev~~~~------------k~vd~~~~~w~~~ 522 (532)
++..+|+.++++.+ +.||+++..++.+
T Consensus 466 ~~~~w~~~~vPl~~~~n~e~~~g~~~p~i~~~~Vdl~~~~f~~~ 509 (555)
T PRK07085 466 PYTEWIAGAVPLTMMMNMERRHGKEKPVIKKALVDLDGPPFKYF 509 (555)
T ss_pred CcceeeEecccHHHHhcHHhhCCCCCceeeeeeeCCCCHHHHHH
Confidence 23789999998633 5689988887743
No 19
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=9.1e-75 Score=634.67 Aligned_cols=344 Identities=21% Similarity=0.317 Sum_probs=303.4
Q ss_pred hcCCCcccccCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHHcC-CceEEEEcccccccccCCceeecCCHHHHhhhhhc
Q 009559 161 RAGPREEIYFKPEEVKAAIVTCGGLCPGLNDVIRHIVITLEIYG-VKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLS 239 (532)
Q Consensus 161 ~agpr~~i~f~p~~~kiaIvt~GG~cPGlNavIr~iv~~l~~yg-v~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~ 239 (532)
.+||+++++|++..+|||||||||+|||||+||+++++++..++ ..+||||++||+||+++++ ++||++.|+.|+++
T Consensus 66 ~~~~~~~~~~~~~~~rIgIv~sGG~APG~nnvI~Gvv~~~~~~~~~~~V~G~~~G~~GLl~~~~--v~Lt~~~v~~~~n~ 143 (610)
T PLN03028 66 AKVPDAQVITEHPAVRVGVVFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFLGGTEGLFAQKT--LEITDDVLSTYKNQ 143 (610)
T ss_pred ccCccccccCCCcccEEEEEccCCCCccHHHHHHHHHHHHHHhCCCcEEEEEccCHHHhcCCCe--EECCHHHHHHHHhc
Confidence 47899999999999999999999999999999999999997552 3379999999999999986 66999999999999
Q ss_pred CCc-ceecccCCc----cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCC--CCCc
Q 009559 240 GGS-LLGVSRGAP----TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDIL--LMDK 312 (532)
Q Consensus 240 GGS-iLGTSR~~~----~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~--~tD~ 312 (532)
||+ +|||||.+. +.++++++|++++||+||+||||||+++|.+|++++++++.+|+|||||||||||++ +||+
T Consensus 144 GG~~iLGSsR~~l~~~e~~~~i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKTIDNDL~~~~td~ 223 (610)
T PLN03028 144 GGYDLLGRTKDQIRTTEQVNAALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDLKNQFVET 223 (610)
T ss_pred CCchhccCcCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEeceeeeCCCCCCCCCC
Confidence 998 899999653 468899999999999999999999999999999999999999999999999999998 8999
Q ss_pred cCChhhHHHHHHHHHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCC-CC---CCC-hhHHHHHH
Q 009559 313 TFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESP-FN---LHG-PNGVLRHL 387 (532)
Q Consensus 313 SfGFdTAv~~a~~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~p-f~---leg-~~~ll~~l 387 (532)
|||||||+++++++|++++.||.|++++|+|||+|||+|||||+++|||++ ||+|||||+. |+ +.. .+.+++.|
T Consensus 224 s~GFdTA~k~~ae~I~ni~~dA~S~~~~~~~VevMGR~aG~LAl~~aLat~-pniilI~EE~~~~~~tL~~iv~~i~~~I 302 (610)
T PLN03028 224 NVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECALQSH-PNMVILGEEVAASKLTLFDITKQICDAV 302 (610)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEEeCCcchHHHHHHHHHhcC-CCEEEecCcccccccccchHHHHHHHHH
Confidence 999999999999999999999999878999999999999999999999998 9999999963 33 222 35788999
Q ss_pred HHHH-hccCceEEEeeccccchhhc-------------cc------------------------------ccccCCCCcc
Q 009559 388 KYLI-ETKGSAVVCVAEGAGQSLIK-------------KT------------------------------NATDASGNIV 423 (532)
Q Consensus 388 k~~~-~~kg~~VVVVAEGag~~l~~-------------~~------------------------------~~~DasGn~~ 423 (532)
++|+ ++++|+|||||||+...+.+ +. ..+|++||+.
T Consensus 303 ~~r~~~gk~~gvIvVsEGlie~ipe~~~li~el~~~~~~g~~~~~~~~~ls~~~~~l~~~lP~~i~~qLl~~~D~~G~~q 382 (610)
T PLN03028 303 QARAEQDKNHGVILIPEGLIESIPEVYALLQEIHGLLKQGVSVDNISSQLSPWASALFEFLPPFIKKQLLLHPESDDSAQ 382 (610)
T ss_pred HHHHHcCCCcEEEEEeCCccccCchHHHHHHHHHHHHhcCcchhhhhhhcCHHHHHHHhhccHHHHHHHhhccCCCCCee
Confidence 9988 47999999999999643110 00 2479999999
Q ss_pred ccc--hHHHHHHHHHHHHHhc-------CcceeEEEeCCCceeccCCCCchhHHHHHHhhHHHHHhHhcCCccEEEEEEC
Q 009559 424 LGD--VGVLIQQETKKYFKEI-------GVPIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHGAFAGFSGITVGLCN 494 (532)
Q Consensus 424 l~d--Ig~~L~~~I~~~f~~~-------g~~~~vk~idpgy~iRs~~p~a~D~i~c~~LG~~AV~~a~aG~Tg~mVgi~n 494 (532)
+++ .+.+|.+.+++++.+. +++++.....+||++||+.|+.+|+.||+.||+.|+.++.+|+||+|++++|
T Consensus 383 ls~i~te~lL~~lV~~eL~~r~~~g~~~~~~f~~~~h~~GYe~R~~~PS~fD~~yay~LG~~A~~l~~~G~tG~M~~I~n 462 (610)
T PLN03028 383 LSQIETEKLLAQLVETEMNKRTKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTN 462 (610)
T ss_pred ecchhHHHHHHHHHHHHHHHHhhccccccccccccccccChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Confidence 999 5678888888877432 3345556667899999999999999999999999999999999999999997
Q ss_pred C-------eeEEechhhHhc
Q 009559 495 T-------HYAYFPIPEVIS 507 (532)
Q Consensus 495 ~-------~~~~vPi~ev~~ 507 (532)
- ++..+||..+++
T Consensus 463 l~~~~~~w~~~~vPl~~~m~ 482 (610)
T PLN03028 463 LKSPVNKWRCGAAPITAMMS 482 (610)
T ss_pred CCCCCeEEEEcccCHHHHhh
Confidence 3 346799999975
No 20
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=100.00 E-value=1.3e-74 Score=627.88 Aligned_cols=348 Identities=24% Similarity=0.328 Sum_probs=302.8
Q ss_pred CCCcEEEEEeCCCCcchHHHHHHHHHHHHHHc--CCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCc-ceeccc
Q 009559 172 PEEVKAAIVTCGGLCPGLNDVIRHIVITLEIY--GVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGS-LLGVSR 248 (532)
Q Consensus 172 p~~~kiaIvt~GG~cPGlNavIr~iv~~l~~y--gv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGS-iLGTSR 248 (532)
|..+||||+||||+|||||+||+++++.+..+ +. +||||++||+||+++++ ++|+++.|+.|+++||| +|||||
T Consensus 70 ~~~~~IgIl~SGG~aPGiNnvI~gv~~~~~~~~~~~-~v~G~~~G~~GLl~~~~--i~Lt~~~v~~~~~~GGsd~LGs~R 146 (550)
T cd00765 70 APKLKIGIVLSGGQAPGGHNVISGLFDYLKERAKGS-TLYGFKGGPAGILKCDY--IELNAEYIQPYRNTGGFDMICSGR 146 (550)
T ss_pred CCCCEEEEECCCCCcHhHHHHHHHHHHHHHHhcCCc-EEEEEccCHHHhcCCCe--EECCHHHHhHHHhCCChhhhcCcC
Confidence 55689999999999999999999999998654 45 79999999999999986 66999999999999999 999999
Q ss_pred CCc----cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCC--CCccCChhhHHHH
Q 009559 249 GAP----TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILL--MDKTFGFDTAVEE 322 (532)
Q Consensus 249 ~~~----~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~--tD~SfGFdTAv~~ 322 (532)
.+. +.++++++|++++||+||+||||||+++|.+|++++++++++|+|||||||||||+++ +|+|||||||+++
T Consensus 147 ~k~~~~e~~~~i~~~l~~~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GFdTA~k~ 226 (550)
T cd00765 147 TKIETEDQFKQAEETAKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKI 226 (550)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHH
Confidence 864 5788999999999999999999999999999999999999999999999999999998 5999999999999
Q ss_pred HHHHHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCC----CCC-hhHHHHHHHHHH-hccCc
Q 009559 323 AQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFN----LHG-PNGVLRHLKYLI-ETKGS 396 (532)
Q Consensus 323 a~~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~----leg-~~~ll~~lk~~~-~~kg~ 396 (532)
++++|++++.||.|++++++|||+|||+|||||+++|||++ ||+|||||++|+ ++. .+.+++.|++|. ++++|
T Consensus 227 ~a~~I~ni~~Da~s~~~~~~~VEvMGR~aG~LAl~~aLat~-p~lilIpE~~~~~~~~L~~v~~~I~~~i~~r~~~gk~~ 305 (550)
T cd00765 227 YSELIGNVMRDARSTGKYWHFVKLMGRSASHIALECALKTH-PNICIISEEVSAQKQTLKNITDYMVDVICKRAELGYNF 305 (550)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEeCCCchHHHHHHHHHhcC-CCEEEecCcccccccCHHHHHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999997 999999999994 321 234445555554 47899
Q ss_pred eEEEeeccccchh----------------------------------------------------hcc--cccccCCCCc
Q 009559 397 AVVCVAEGAGQSL----------------------------------------------------IKK--TNATDASGNI 422 (532)
Q Consensus 397 ~VVVVAEGag~~l----------------------------------------------------~~~--~~~~DasGn~ 422 (532)
+||||+||+...+ +.+ ...+|++||+
T Consensus 306 gvIvVsEGlie~ipe~~~Li~el~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~g~~f~~lp~~i~~ql~~~~D~~G~~ 385 (550)
T cd00765 306 GVVLVPEGLIEFIPEVKELIAELNEILANEVVEFNGLWKKKLTEQSLKLFDLLPKGVYLPLFIEAIQEQLMLERDPHGNV 385 (550)
T ss_pred EEEEEeCCchhhCchHHHHHHHHHHHhhhcccchhhhhhhcccHHHHHhhhccccccccccchHHHHHHhhcccCCCCCE
Confidence 9999999996510 000 1247999999
Q ss_pred cccch--HHHHHHHHHHHHHhcCc------ceeEEEeCCCceeccCCCCchhHHHHHHhhHHHHHhHhcCCccEEEEEEC
Q 009559 423 VLGDV--GVLIQQETKKYFKEIGV------PIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHGAFAGFSGITVGLCN 494 (532)
Q Consensus 423 ~l~dI--g~~L~~~I~~~f~~~g~------~~~vk~idpgy~iRs~~p~a~D~i~c~~LG~~AV~~a~aG~Tg~mVgi~n 494 (532)
++++| +..|.++|++++.+.+. +++.....+||++||+.|+.+|+.||+.||+.|++++.+|+||+|++++|
T Consensus 386 qls~iete~lL~~lV~~~L~~~k~~g~y~~~f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~~~~g~tGyM~~I~~ 465 (550)
T cd00765 386 QVSRIETEKLLIQMVETRLEKMKQAGAYKGQFMGQSHFFGYEGRCAFPSNFDADYCYALGYGAGVLLNSGKTGYISSVGN 465 (550)
T ss_pred eeccchHHHHHHHHHHHHHHHhhhcccccccccceeeecCcchhccCCcHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Confidence 99999 99999999998865322 25566778899999999999999999999999999999999999999997
Q ss_pred C-------eeEEechhhHhcCCC------------cCCCCcHHHHHHH
Q 009559 495 T-------HYAYFPIPEVISYPR------------AVDPNSRMWHRCL 523 (532)
Q Consensus 495 ~-------~~~~vPi~ev~~~~k------------~vd~~~~~w~~~l 523 (532)
- ++..+||..+++.+| .||+++..+..+.
T Consensus 466 l~~~~~~w~~~~vPl~~~mn~e~~~g~~~pvi~~~~v~l~g~~f~~~~ 513 (550)
T cd00765 466 LAAPVEEWTVGGVPLTMLMNMERRHGKFKPVIKKALVDLEGAPFKKFA 513 (550)
T ss_pred CCCCceEEEEecccHHHHhccccccCCcceecccceeCCCCHHHHHHH
Confidence 3 357799999997443 4777777665543
No 21
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=100.00 E-value=8.5e-73 Score=615.09 Aligned_cols=347 Identities=21% Similarity=0.275 Sum_probs=299.5
Q ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHHc--CCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCc-ceecccC
Q 009559 173 EEVKAAIVTCGGLCPGLNDVIRHIVITLEIY--GVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGS-LLGVSRG 249 (532)
Q Consensus 173 ~~~kiaIvt~GG~cPGlNavIr~iv~~l~~y--gv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGS-iLGTSR~ 249 (532)
..+|||||||||+|||||+||+++++++..+ +. +||||++||+||+++++ ++|+++.++.|+++||+ +|||+|+
T Consensus 95 ~~~~IGIv~sGG~APG~nnvI~Gv~~~a~~~~~~~-~vyG~~~G~~GLl~~~~--v~Lt~~~v~~~~n~GG~dlLGS~R~ 171 (568)
T PLN02251 95 QKLKIGVVLSGGQAPGGHNVISGIFDYLQEHAKGS-VLYGFKGGPAGIMKCKY--VELTAEFIYPYRNQGGFDMICSGRD 171 (568)
T ss_pred ccceEEEECcCCCchhHHHHHHHHHHHHHHhCCCC-EEEEEccChHHhcCCCe--EECCHHHhhhhhhCCCceEecccCC
Confidence 4489999999999999999999999999654 55 79999999999999987 66999999999999999 9999998
Q ss_pred Cc----cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCC--ccCChhhHHHHH
Q 009559 250 AP----TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMD--KTFGFDTAVEEA 323 (532)
Q Consensus 250 ~~----~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD--~SfGFdTAv~~a 323 (532)
+. +.++++++|++++||+||+||||||+++|..|++++++++.+|+|||||||||||++++| +|||||||++++
T Consensus 172 k~~~~e~~~~~~~~l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~k~~ 251 (568)
T PLN02251 172 KIETPEQFKQAEETATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIY 251 (568)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHHHHH
Confidence 53 578999999999999999999999999999999999999999999999999999999999 699999999999
Q ss_pred HHHHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCC-h----hHHHHHHHHHH-hccCce
Q 009559 324 QRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHG-P----NGVLRHLKYLI-ETKGSA 397 (532)
Q Consensus 324 ~~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg-~----~~ll~~lk~~~-~~kg~~ 397 (532)
+++|++++.||.|+.++++|||+|||+|||||+++|||++ ||+|||||++++.+. . +.+++.|++|. ++++|+
T Consensus 252 a~~I~ni~~da~S~~k~~~~VevMGR~aG~LAL~~aLat~-pniilIpEe~~~~~~~L~~I~~~I~~~I~~R~~~gk~~g 330 (568)
T PLN02251 252 SEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTH-PNITIIGEEVAAKKLTLKNVTDYIVDVICKRAELGYNYG 330 (568)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEeCCCchHHHHHHHHHhhC-CCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcE
Confidence 9999999999999777788999999999999999999998 999999999665331 2 23445566655 478999
Q ss_pred EEEeeccccchh-------------------------hcc--------------------cccccCCCCccccc--hHHH
Q 009559 398 VVCVAEGAGQSL-------------------------IKK--------------------TNATDASGNIVLGD--VGVL 430 (532)
Q Consensus 398 VVVVAEGag~~l-------------------------~~~--------------------~~~~DasGn~~l~d--Ig~~ 430 (532)
||||+||+...+ +.. ...+|++||+++++ .+..
T Consensus 331 vIlVsEGlie~ipe~~~li~el~~~l~~~~~~~~~~~~~~ls~~~~~lf~~lP~~i~~qll~~rD~~G~~qls~Iete~l 410 (568)
T PLN02251 331 VILIPEGLIDFIPEVQHLIAELNEILAHDVVDEEGHWKKKLKPQSLQLFDFLPHAIQEQLMLERDPHGNVQVAKIETEKM 410 (568)
T ss_pred EEEEeCCchhhCchHHHHHHHHHHHhhhcccccchhhhhhCCHHHHHHHHhCcHHHHHHhccccCCCCCeeecccHHHHH
Confidence 999999993100 000 12479999999999 5789
Q ss_pred HHHHHHHHHHhcCc------ceeEEEeCCCceeccCCCCchhHHHHHHhhHHHHHhHhcCCccEEEEEECC-------ee
Q 009559 431 IQQETKKYFKEIGV------PIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHGAFAGFSGITVGLCNT-------HY 497 (532)
Q Consensus 431 L~~~I~~~f~~~g~------~~~vk~idpgy~iRs~~p~a~D~i~c~~LG~~AV~~a~aG~Tg~mVgi~n~-------~~ 497 (532)
|.+++++++.+.+. +++++...+||++||+.|+.+|+.||+.||+.|+.++.+|+||+|++++|. ++
T Consensus 411 L~~lV~~~L~~rk~~~~~~~~f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~li~~G~tGyM~~I~nl~~~~~~w~~ 490 (568)
T PLN02251 411 LIQMVETELEKRKQEGSYKGHFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTV 490 (568)
T ss_pred HHHHHHHHHhhhccccccccccceeEEecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEcCCCCcceeEE
Confidence 99999988865321 356778889999999999999999999999999999999999999999984 34
Q ss_pred EEechhhHhcCC------------CcCCCCcHHHHHHH
Q 009559 498 AYFPIPEVISYP------------RAVDPNSRMWHRCL 523 (532)
Q Consensus 498 ~~vPi~ev~~~~------------k~vd~~~~~w~~~l 523 (532)
.-+||..+++.+ ..||+++..+..+.
T Consensus 491 ~~vpl~~~mn~e~~~~~~~pvi~k~~v~l~g~~f~~~~ 528 (568)
T PLN02251 491 GGTALTSLMDVERRHGKFKPVIKKAMVELEGAPFKKFA 528 (568)
T ss_pred cCccHHHHhhhhhhCCCcCccccccccCCCCHHHHHHH
Confidence 669999988733 25788877766543
No 22
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=100.00 E-value=1.1e-72 Score=572.58 Aligned_cols=276 Identities=37% Similarity=0.571 Sum_probs=242.7
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc---
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP--- 251 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~--- 251 (532)
.||||+||||||||||++|+++++++..+|+ +||||++||+||+++++ ++|+++.++.|.++|||+|||||.++
T Consensus 1 KrI~Il~sGG~apG~Na~i~~~v~~a~~~g~-~v~g~~~G~~GL~~~~~--~~l~~~~v~~~~~~gGt~lgtsR~~~~~~ 77 (282)
T PF00365_consen 1 KRIAILTSGGDAPGMNAAIRGVVRYAIRRGW-EVYGIRNGFEGLLNGDI--IELTWEDVRGIINQGGTILGTSRFKPFKD 77 (282)
T ss_dssp EEEEEEEESS--TTHHHHHHHHHHHHHHTTS-EEEEETTHHHHHHHCTE--EEECGGGGTTGGGSSSSTTTBBBSSGGGS
T ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHhcCC-EEEEEEccCccceeeeE--EeecccCccccccCCCcEeCcccCccccc
Confidence 4899999999999999999999999999999 79999999999999986 56899999999999999999999864
Q ss_pred --cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHH
Q 009559 252 --TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINS 329 (532)
Q Consensus 252 --~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~ 329 (532)
..++++++|++++||+||+||||||+++|++|++++. ++||||||||||||++||+|||||||+++++++|++
T Consensus 78 ~~~~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L~~~~~-----i~vigiPkTIDNDi~gtd~siGf~TA~~~~~~~i~~ 152 (282)
T PF00365_consen 78 PEGRKKIVENLKKLGIDALIVIGGDGSMKGAHKLSEEFG-----IPVIGIPKTIDNDIPGTDYSIGFDTAVNYIAEAIDN 152 (282)
T ss_dssp HHHHHHHHHHHHHTTESEEEEEESHHHHHHHHHHHHHHH-----SEEEEEEEETTSSCTTSSS-BTHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCc-----eEEEEEeccccCCcCCCCCCcccCchhHHHHHHHHH
Confidence 3467999999999999999999999999999998754 999999999999999999999999999999999999
Q ss_pred HHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHh-ccCceEEEeeccccch
Q 009559 330 AYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIE-TKGSAVVCVAEGAGQS 408 (532)
Q Consensus 330 a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~-~kg~~VVVVAEGag~~ 408 (532)
++.+|.| +++|+|||+|||+|||||++++||++ +|+|||||.||+++ .+++.|+++++ .+++++||||||+..
T Consensus 153 i~~~a~s-~~rv~ivEvmGr~~G~LAl~~ala~~-a~~ilipE~~~~~~---~~~~~i~~~~~~~k~~~iVvvsEG~~~- 226 (282)
T PF00365_consen 153 IKTTARS-HNRVFIVEVMGRNAGWLALAAALATG-ADLILIPEEPFDLD---ELLDDIKKRYERGKRYGIVVVSEGAKD- 226 (282)
T ss_dssp HHHHHHH-STEEEEEEESSTTSTHHHHHHHHHHT-SSEEEBTTSHHHHH---HHHHHHHHHHHTTSSEEEEEEETTSBS-
T ss_pred HHHhhcc-cCCceEEEeCCCCcCHHHHHHHhccC-CCEEEEeccccchH---HHHHHhhhhhcccCceEEEEecccccc-
Confidence 9999986 68899999999999999999999998 99999999998875 89999999887 578999999999964
Q ss_pred hhcccccccCCCCccccchHHHHHHHHHHHHHhcCcceeEEEeCCCceeccCCCCchhHHHHHHhhHHHHHhHhc
Q 009559 409 LIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHGAFA 483 (532)
Q Consensus 409 l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~~~vk~idpgy~iRs~~p~a~D~i~c~~LG~~AV~~a~a 483 (532)
...+. .+.+++.+++ +..+++|+..|||+|||+.|+++||++|++||.+||+++++
T Consensus 227 ---------------~~~i~---~~~~~~~~~~-~~~~~~r~~~lGh~Qrgg~P~~~DR~la~~~g~~Av~~i~e 282 (282)
T PF00365_consen 227 ---------------GQPIS---SEFIKELLEE-GLGFDVRVTILGHLQRGGTPSAFDRILATRFGIKAVEAILE 282 (282)
T ss_dssp ---------------SHBHH---HHHHHHHHHH-TTTSEEEEEE-GGGGGTSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------ccccc---cccccccccc-ccccceeecccchhhcCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 01111 1222222222 33578999999999999999999999999999999999864
No 23
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=6.2e-71 Score=617.02 Aligned_cols=324 Identities=21% Similarity=0.229 Sum_probs=282.2
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc--
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP-- 251 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~-- 251 (532)
.+||||+||||||||||++||++|+++..+|+ +||||++||+||+++++ ++|+++.|++|+++|||+|||+|..+
T Consensus 389 ~~~IaIltsGG~apGmNaairavv~~a~~~g~-~v~gi~~G~~GL~~~~~--~~l~~~~v~~~~~~GGt~LGT~R~~~~~ 465 (762)
T cd00764 389 NLNIAIVNVGAPAAGMNAAVRSAVRYGLAHGH-RPYAIYDGFEGLAKGQI--VELGWIDVGGWTGRGGSELGTKRTLPKK 465 (762)
T ss_pred ccEEEEEecCCCchhHHHHHHHHHHHHHHCCC-EEEEEecCHHHhcCCCc--ccCCHHHHHHHHhCCcccccccCCCcHH
Confidence 38999999999999999999999999988998 79999999999999987 56999999999999999999999875
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHh-cCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHHH
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRK-RRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSA 330 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~k-r~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~a 330 (532)
+.++++++|++++||+||+||||||+++|++|+++..+ ..++|+||||||||||||++||+|||||||+++++++|+++
T Consensus 466 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTAln~~~~~id~i 545 (762)
T cd00764 466 DLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALNALMKYCDRI 545 (762)
T ss_pred HHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999987543 24689999999999999999999999999999999999999
Q ss_pred HHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHh-----ccCceEEEeeccc
Q 009559 331 YIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIE-----TKGSAVVCVAEGA 405 (532)
Q Consensus 331 ~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~-----~kg~~VVVVAEGa 405 (532)
+++|.|+++||||||+|||+|||||++++||+| ||+|||||+||+++.....++++.++++ ++.+.++++|||+
T Consensus 546 ~~tA~s~~~RvfVVEvMGR~~G~LA~~aglA~G-Ad~i~iPE~~~~~~~l~~dv~~l~~~~~~~~~~g~~~~~~~~se~~ 624 (762)
T cd00764 546 KQSASGTKRRVFIVETMGGYCGYLATMTGLAVG-ADAAYVFEEPFNIRDLQENVEHLTEKMKTTIGRGLVLRNEKCNENY 624 (762)
T ss_pred HHHHhhcCCeEEEEEeCCCCccHHHHHHHhhcC-CCEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeEeeeeeecCC
Confidence 999988777999999999999999999999998 9999999999999743333344433332 3557889999988
Q ss_pred cchhhcccccccCCCCccccchHHHHHHHHHHHHHhcCcceeEEEeCCCceeccCCCCchhHHHHHHhhHHHHHhHhcC-
Q 009559 406 GQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHGAFAG- 484 (532)
Q Consensus 406 g~~l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~~~vk~idpgy~iRs~~p~a~D~i~c~~LG~~AV~~a~aG- 484 (532)
... .++..+++++++ .+++|...|||+|||+.|+++||++|++||..||+++.+.
T Consensus 625 ~~~-----------------~~~~~~~~~~~~-------~~~~R~~vLGh~QrGG~Ps~~DR~latr~g~~Av~~l~~~~ 680 (762)
T cd00764 625 TTV-----------------FTYELYSEEGKG-------VFDCRTNVLGHVQQGGAPSPFDRNFGTKFAVKAMKWIEQKL 680 (762)
T ss_pred ccc-----------------cHHHHHHHHHhc-------CCceEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 421 123334444432 3679999999999999999999999999999999999884
Q ss_pred --------------CccEEEEEECCeeEEechhhHhcCC-CcCCCCcHHHHHHHHh
Q 009559 485 --------------FSGITVGLCNTHYAYFPIPEVISYP-RAVDPNSRMWHRCLTS 525 (532)
Q Consensus 485 --------------~Tg~mVgi~n~~~~~vPi~ev~~~~-k~vd~~~~~w~~~l~~ 525 (532)
.+.+++|++++++.+.|+.++.+.. ....|+..||..+...
T Consensus 681 ~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~r~p~~~~w~~~~~~ 736 (762)
T cd00764 681 KENYAAGNEFANDPDFNCVNGVKKYAVLFEPVEELKQTTFEHRIPKEQWWLSLRPL 736 (762)
T ss_pred hhhhcccccccCCCCceEEEEEeCCEEEEeeHHHHHHhhhhcCCCcchhhHhHHHH
Confidence 2889999999999999999888743 4566889999987654
No 24
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=1.1e-70 Score=629.78 Aligned_cols=346 Identities=21% Similarity=0.283 Sum_probs=299.3
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHH--HcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCc-ceecccCC
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLE--IYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGS-LLGVSRGA 250 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~--~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGS-iLGTSR~~ 250 (532)
.+|||||||||+|||||+||++++..+. ..+. +||||++||+||+++++ ++|+++.|+.|+++||| +|||+|.+
T Consensus 102 ~krIGILtSGGdAPG~NnvI~gv~~~l~~~~~~~-~VyGf~~G~~GLl~~~~--ieLt~~~V~~i~n~GGt~iLGS~R~k 178 (1328)
T PTZ00468 102 ARRIGVVLSGGQASGGHNVIAGLMSYIKLCNQSS-QLFGFLGGPEGVYSERY--RELTEDDINGILNQGGFNIICSGRHK 178 (1328)
T ss_pred CCEEEEECcCCCchhHHHHHHHHHHHHHHhcCCC-EEEEEccChHHhcCCCe--EeCCHHHHHHHHhCCCcccccCcCCC
Confidence 3899999999999999999999999985 3445 89999999999999986 66999999999999997 99999986
Q ss_pred c----cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCC--CCccCChhhHHHHHH
Q 009559 251 P----TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILL--MDKTFGFDTAVEEAQ 324 (532)
Q Consensus 251 ~----~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~--tD~SfGFdTAv~~a~ 324 (532)
. +.++++++|++++||+||+||||||+++|.+|++++++++++++|||||||||||+++ ||+|||||||+++++
T Consensus 179 l~~ee~~~~~le~lkkl~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTIDNDL~g~~tD~S~GFdTA~k~ia 258 (1328)
T PTZ00468 179 IETEEQMRASLEICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKTYS 258 (1328)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEcCCCCCCcCCCCCCHHHHHHHHH
Confidence 5 4788999999999999999999999999999999999999999999999999999985 899999999999999
Q ss_pred HHHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCC----C-hhHHHHHHHHHHh-ccCceE
Q 009559 325 RAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLH----G-PNGVLRHLKYLIE-TKGSAV 398 (532)
Q Consensus 325 ~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~le----g-~~~ll~~lk~~~~-~kg~~V 398 (532)
++|++++.+|.|++++|+|||+|||+|||||+++|||++ ||+|||||++++.+ . .+.+++.|.+|++ +++|+|
T Consensus 259 e~I~nl~~~A~S~~~rv~~VEVMGR~AGhLAL~~ALAtg-aniiLIPEe~~~k~~tL~dIvd~Iv~~I~kR~~~Gk~ygI 337 (1328)
T PTZ00468 259 EQIGSIMDAIKTEGYGYYFVRLMGRSASHITLECGLQTR-ANMILIGEEIKEENRSLMSIVDEIVEMILKRDSLGKKHGI 337 (1328)
T ss_pred HHHHHHHHHhhhcCCeEEEEEeCCcchHHHHHHHHHhcC-CCEEEecCcCccchhhhhHHHHHHHHHHHHHHHcCCCcEE
Confidence 999999999999889999999999999999999999998 99999999998732 1 2344555555544 689999
Q ss_pred EEeeccccch-------------hh---------c------------c-------c--ccccCCCCccccchH--HHHHH
Q 009559 399 VCVAEGAGQS-------------LI---------K------------K-------T--NATDASGNIVLGDVG--VLIQQ 433 (532)
Q Consensus 399 VVVAEGag~~-------------l~---------~------------~-------~--~~~DasGn~~l~dIg--~~L~~ 433 (532)
|||+||+... ++ . . . ..+|++||++++.|+ ..|++
T Consensus 338 IvVsEGliefIpe~~~Li~eln~~l~~~~~g~~i~~~Ls~~~~~lf~~lP~~i~~qLl~~rD~hGnvqls~I~tEklLa~ 417 (1328)
T PTZ00468 338 VLLPEGLIEFIPEFETLIKELNLILLKTNDRKQIIDSLSQEMKTLFLELPSDVQNQLLLERDPHGNVQVAKIATEELLVH 417 (1328)
T ss_pred EEEcCCccccccHHHHHHHHHHHhhccccchhhhhhhcCHHHHHHHHhCcHHHHHHhccccCCCCCEeeccccHHHHHHH
Confidence 9999999620 00 0 0 0 247999999999987 89999
Q ss_pred HHHHHHHhcCcc---eeEEEeCCCceeccCCCCchhHHHHHHhhHHHHHhHhcCCccEEEEEECC-------eeEEechh
Q 009559 434 ETKKYFKEIGVP---IDVKYIDPTYMIRACRANASDGILCTVLGQNAVHGAFAGFSGITVGLCNT-------HYAYFPIP 503 (532)
Q Consensus 434 ~I~~~f~~~g~~---~~vk~idpgy~iRs~~p~a~D~i~c~~LG~~AV~~a~aG~Tg~mVgi~n~-------~~~~vPi~ 503 (532)
.|++++++.+.+ +.++.-.+||++||+.|+.+|+.||+.||..|++++.+|+||+|++++|. ++..+||.
T Consensus 418 lV~~~L~~~~~~~~~f~~k~HflGYE~RCa~PS~FD~~yayaLG~~Av~l~~~G~TGyMatI~nl~~~~~~W~~~~vPL~ 497 (1328)
T PTZ00468 418 MAKEKLEEVKKDYILDNVKTHYFGYEGRCALPSNFDASYCFALGHTAAALIDNQRSGYMAVVRKLSLTPEQWEPAGCPLT 497 (1328)
T ss_pred HHHHHHHHhhcccccCCceEeecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCceEEEEccccHH
Confidence 999988655443 23555578999999999999999999999999999999999999999984 34679999
Q ss_pred hHhcCC------------CcCCCCcHHHHHHH
Q 009559 504 EVISYP------------RAVDPNSRMWHRCL 523 (532)
Q Consensus 504 ev~~~~------------k~vd~~~~~w~~~l 523 (532)
.+++.+ ..||+++..+.-+.
T Consensus 498 ~mmn~E~r~g~~~pvI~k~~V~l~g~~f~~~~ 529 (1328)
T PTZ00468 498 YMMNIELRKGKSVPVIKKYLVDLKGQSYLAYC 529 (1328)
T ss_pred HHhhHHhhCCCccceeeecccCCCcHHHHHHH
Confidence 998632 35788877765543
No 25
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=1.1e-69 Score=625.05 Aligned_cols=345 Identities=23% Similarity=0.337 Sum_probs=298.9
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHc--CCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCc-ceecccCC
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIY--GVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGS-LLGVSRGA 250 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~y--gv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGS-iLGTSR~~ 250 (532)
.+||||+||||||||||+||++++.++.++ |. +||||++||+||+++++ ++|+++.|+.|+++||| +|||+|..
T Consensus 177 ~~rIgIl~SGGpAPGmNavI~Gvv~~a~~~~~g~-~VyG~~~G~~GLl~~~~--veLt~~~V~~~~n~GGs~iLGSgR~k 253 (1419)
T PTZ00287 177 VLKIGIILSGGPAPGGHNVISGIYDYAKRYNEQS-QVIGFLGGIDGLYSKNY--VTITDSLMNRFRNLGGFNMLWSGRGK 253 (1419)
T ss_pred ceEEEEEccCCCcHhHHHHHHHHHHHHHHhCCCC-EEEEEccChHHhcCCCe--EECCHHHHhhHHhCCChhHhhCCCCC
Confidence 379999999999999999999999999755 55 79999999999999986 56999999999999997 89999976
Q ss_pred c----cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCC--CCCccCChhhHHHHHH
Q 009559 251 P----TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDIL--LMDKTFGFDTAVEEAQ 324 (532)
Q Consensus 251 ~----~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~--~tD~SfGFdTAv~~a~ 324 (532)
. +.+++++.|++++||+||+||||||+++|.+|++++++.+++++|||||||||||++ +||+|||||||+++++
T Consensus 254 ~~~~e~~~ki~e~lkkl~Id~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIPKTIDNDL~~~gTD~S~GFDTA~n~ia 333 (1419)
T PTZ00287 254 VRNKDDLIAIENIVAKLKLNGLVIIGGDGSNSNAALISEYFAERQIPISIIGIPKTIDGDLKSEAIEISFGFDTATKTYS 333 (1419)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEeeeecCCCCCCCCCcCCCHHHHHHHHH
Confidence 5 578899999999999999999999999999999999999999999999999999999 7999999999999999
Q ss_pred HHHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCC-hhHHH----HHHHHHHh-ccCceE
Q 009559 325 RAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHG-PNGVL----RHLKYLIE-TKGSAV 398 (532)
Q Consensus 325 ~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg-~~~ll----~~lk~~~~-~kg~~V 398 (532)
++|++++.++.+++++++|||+|||+|||||+++|||+| ||+|||||++|..+- .+.+. +.+.+|.+ +++|+|
T Consensus 334 e~I~ni~~D~~Ss~~~~~VVEVMGR~AG~LAl~~aLAtg-AdlilIPEe~~~~~~~L~dI~~~Iv~~I~kR~~~gk~~gV 412 (1419)
T PTZ00287 334 EVIGNLCTDVKTGHNVYHVVRVMGRSASHVVLECALQTR-PNIVLIGEEVEKENLSLKDIVSNIVNTILKRRSLNKNYGV 412 (1419)
T ss_pred HHHHHHHHHHHHhCCeEEEEEECCCcchHHHHHHHHhcC-CCEEEecCcccccCCCHHHHHHHHHHHHHHHHHcCCCcEE
Confidence 999999999988888889999999999999999999998 999999998654331 23433 33444443 789999
Q ss_pred EEeeccccch-------------hhc------cc--------------------ccccCCCCccccchH--HHHHHHHHH
Q 009559 399 VCVAEGAGQS-------------LIK------KT--------------------NATDASGNIVLGDVG--VLIQQETKK 437 (532)
Q Consensus 399 VVVAEGag~~-------------l~~------~~--------------------~~~DasGn~~l~dIg--~~L~~~I~~ 437 (532)
||||||+... ++. +. ..+|++||+++++|+ ..|.+++++
T Consensus 413 IvVsEGlie~Ipe~~~Li~eln~~l~~g~~~~~~~~~~~~~f~~LP~~i~~qLl~~rD~~Ghvqls~i~te~lL~~~V~~ 492 (1419)
T PTZ00287 413 ILIPEGLIEFVPEMKILIGELNVILKEGPFDASKLKHSREVWDFLPSIIRDQLLMDRESTGYIQVGKIATERLIIVLVES 492 (1419)
T ss_pred EEEeCCcchhcchHHHHHHHhhhhcccCcchhhhhhhhhhhhhhccHHHHhhhhcccCCCCCEeccccchHHHHHHHHHH
Confidence 9999999751 110 00 147999999999885 478888888
Q ss_pred HHHhc---CcceeEEEeCCCceeccCCCCchhHHHHHHhhHHHHHhHhcCCccEEEEEECC-------eeEEechhhHhc
Q 009559 438 YFKEI---GVPIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHGAFAGFSGITVGLCNT-------HYAYFPIPEVIS 507 (532)
Q Consensus 438 ~f~~~---g~~~~vk~idpgy~iRs~~p~a~D~i~c~~LG~~AV~~a~aG~Tg~mVgi~n~-------~~~~vPi~ev~~ 507 (532)
++++. |+.++++...+||++||+.|+.+|+.||+.||..|++++.+|+||+|+++.|- ++..+||..++.
T Consensus 493 ~L~~~~~~g~~~k~~~h~lGYe~RcA~PS~fD~~yay~LG~~Av~l~~~G~tG~Mv~I~nl~~~~~~w~~~~vPl~~~m~ 572 (1419)
T PTZ00287 493 ELAKLNDNNLNIQFMAHYLGYEGRCAIPSNFDCNYCYALGYNAALLIDHKKTGYMSIIQNLEDSYANWIPAAIPFLRIMH 572 (1419)
T ss_pred HHHHHHhcCCCeeEEEeecCcchhccCCcHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCcceeEEcccCHHHHhh
Confidence 77543 67789999999999999999999999999999999999999999999999973 346799999886
Q ss_pred CC-------------CcCCCCcHHHHHH
Q 009559 508 YP-------------RAVDPNSRMWHRC 522 (532)
Q Consensus 508 ~~-------------k~vd~~~~~w~~~ 522 (532)
-+ ..||+++..+.-+
T Consensus 573 ~e~~~~g~~~pvi~k~~v~l~g~~f~~~ 600 (1419)
T PTZ00287 573 VNRDNTGKEFPAVKRYLVDLNSPLFNVL 600 (1419)
T ss_pred HHhhccCCCceeEEeeeeCCCCHHHHHH
Confidence 22 2478887766544
No 26
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=1.5e-63 Score=574.38 Aligned_cols=328 Identities=19% Similarity=0.229 Sum_probs=281.9
Q ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHH-HcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcce-ecccCC
Q 009559 173 EEVKAAIVTCGGLCPGLNDVIRHIVITLE-IYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLL-GVSRGA 250 (532)
Q Consensus 173 ~~~kiaIvt~GG~cPGlNavIr~iv~~l~-~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiL-GTSR~~ 250 (532)
.++|||||||||+|||||+|||++++.+. .+|+ ++| +.||.||+++++ ++||.+.|++|+++|||+| ||||..
T Consensus 835 ~~~rIGVLtSGGdAPG~NnVIrgvv~~a~~~~g~--~~g-f~G~~GLl~~~~--i~Lt~~~V~~i~n~GGtiLlgssR~~ 909 (1419)
T PTZ00287 835 FEIKIGIVFLSRQAPGAMNVLCGLYRRLKLLKGV--CIA-FYGLYGLLNNKY--IIIDDDNIAKHVNQGGLELTGNSPEH 909 (1419)
T ss_pred CCcEEEEECcCCCcHhHHHHHHHHHHHHHHhCCe--EEE-EeCchhhcCCCe--EECCHHHHhhHHHcCCeeecCCcCCC
Confidence 45899999999999999999999999995 4576 355 559999999976 6699999999999999999 999964
Q ss_pred c-----cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCC--CCccCChhhHHHHH
Q 009559 251 P-----TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILL--MDKTFGFDTAVEEA 323 (532)
Q Consensus 251 ~-----~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~--tD~SfGFdTAv~~a 323 (532)
+ ..++++++|++++||+||+||||||+++|..|+|++++++++++||||||||||||.+ ||+|||||||++.+
T Consensus 910 ~f~t~e~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv~~~ 989 (1419)
T PTZ00287 910 SLFDKENRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTKVY 989 (1419)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHHHHHHH
Confidence 3 4788999999999999999999999999999999999999999999999999999987 99999999999999
Q ss_pred HHHHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCC-----hhHHHHHHHHHHh-ccCce
Q 009559 324 QRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHG-----PNGVLRHLKYLIE-TKGSA 397 (532)
Q Consensus 324 ~~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg-----~~~ll~~lk~~~~-~kg~~ 397 (532)
+++|++++.+|.|++++|+|||||||+|||||+++|||+| ||+|||||.+++... .+.+++.|++|.+ +|.|+
T Consensus 990 seaI~nL~~dA~S~~ry~~fVEVMGR~aGhLALe~aLatg-AniiLIPEe~~~~~~tL~~Iid~I~~~I~~R~~~GK~yg 1068 (1419)
T PTZ00287 990 ASLIGNVLTDAVSMPKYWHFIRLMGRSPSHEVLECALQTH-PNMVIISEEYGAADKTLWRVVQDIADVVCARAELGKNYG 1068 (1419)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEECCCchHHHHHHHHHhcC-CCEEEecCcccccccchhHHHHHHHHHHHHHHHcCCCcE
Confidence 9999999999999877899999999999999999999998 999999999887211 2366677777765 68999
Q ss_pred EEEeeccccc-------------hhhcc----------------------------------------------------
Q 009559 398 VVCVAEGAGQ-------------SLIKK---------------------------------------------------- 412 (532)
Q Consensus 398 VVVVAEGag~-------------~l~~~---------------------------------------------------- 412 (532)
||||+||+-. +++.+
T Consensus 1069 IVlV~EGLie~Ipe~k~Li~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lsp~s 1148 (1419)
T PTZ00287 1069 TVLIPDALLMHLPHMKILLSEISDILNDANEKGQLVEARNDLVNLSTTQHGHLGSTAGTVAGAEQPLSASPWVSKLTPWS 1148 (1419)
T ss_pred EEEEcCcHHHhCHHHHHHHHHHHHHHHhhhhcccccccccchhhccccccccccccccccccccccchhhHHHhhCCHHH
Confidence 9999999742 11100
Q ss_pred -------------c-ccccCCCCccccch--HHHHHHHHHHHHHhc---Cc---ceeEEEeCCCceeccCCCCchhHHHH
Q 009559 413 -------------T-NATDASGNIVLGDV--GVLIQQETKKYFKEI---GV---PIDVKYIDPTYMIRACRANASDGILC 470 (532)
Q Consensus 413 -------------~-~~~DasGn~~l~dI--g~~L~~~I~~~f~~~---g~---~~~vk~idpgy~iRs~~p~a~D~i~c 470 (532)
+ ..+|. ||++++.| -..|.+++++++++. |. .+.....-.||..||+-|+-||+.||
T Consensus 1149 ~~lf~slP~~i~~qLl~rD~-gn~~vs~IeTE~LL~~mV~~eL~~rk~~g~y~g~F~~~~HffGYegR~~~PS~FD~~y~ 1227 (1419)
T PTZ00287 1149 LALLKTFPQFIIKELLHVDL-RSMRFEKLETEQLLLQMVKEELHQRKQKGKYSGSFMGLTHFFGYQGRSSLPSEFDCKLA 1227 (1419)
T ss_pred HHHHHhccHHHHHHHhccCC-CCcccccchHHHHHHHHHHHHHHHHHhcCccccccceeeeccccccccCCCCccchHHH
Confidence 0 12576 88888776 357778887776532 32 35555666899999999999999999
Q ss_pred HHhhHHHHHhHhcCCccEEEEEECC-------eeEEechhhHhc
Q 009559 471 TVLGQNAVHGAFAGFSGITVGLCNT-------HYAYFPIPEVIS 507 (532)
Q Consensus 471 ~~LG~~AV~~a~aG~Tg~mVgi~n~-------~~~~vPi~ev~~ 507 (532)
+.||+.|..++..|+||+|.+++|- +..-+||..++.
T Consensus 1228 Y~LG~~A~~li~~g~tGym~~i~nl~~~~~~W~~~giPlt~mm~ 1271 (1419)
T PTZ00287 1228 YSYGHAASIVIESGLTGYIVSIRGLCGNIKDWKLFAIPFISLMK 1271 (1419)
T ss_pred HHHHHHHHHHHhCCCeEEEEEecCccCCHHHeEEccchhhhhhc
Confidence 9999999999999999999999873 457799998775
No 27
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=4.8e-57 Score=517.72 Aligned_cols=332 Identities=15% Similarity=0.190 Sum_probs=281.0
Q ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCC----HHHHhhhhhcCCcceecc-
Q 009559 173 EEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLS----RKVVQNIHLSGGSLLGVS- 247 (532)
Q Consensus 173 ~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt----~~~V~~i~~~GGSiLGTS- 247 (532)
...++|||+.||++||+|+||.+++.++.+.| ++||.+||.||++++...+.|| .+.++.|+++||++|+++
T Consensus 674 ~~~~vgIv~~g~~aPG~NnVI~g~~~~~~~~g---vig~~~G~~~L~~~~~~~v~l~~~~~~~~~~~~~n~GG~~~~~~~ 750 (1328)
T PTZ00468 674 ACESLGLILSCLSTPGTQNVICGLVNGLPSLK---QLIVFKSLSDFYEGKALKVDLTSEGSLEFFENSLNSGGCIFPNGV 750 (1328)
T ss_pred cceeEEEEecCCCCccHHHHHHHHHHHHHhCC---cEEEEechhHHhcCCceEEecccchhHHHHHHHHhcCCeeeeccc
Confidence 34789999999999999999999999998777 7999999999999998888888 689999999999999999
Q ss_pred ---------cCCc------------------------cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcC---
Q 009559 248 ---------RGAP------------------------TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRR--- 291 (532)
Q Consensus 248 ---------R~~~------------------------~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~--- 291 (532)
|..+ +.+.+.+.|++++||+|++||||||+++|+.|+|++.+++
T Consensus 751 ~~~~~~~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~Id~LVvIGGDgS~t~A~~Lae~~~~~~~~~ 830 (1328)
T PTZ00468 751 EIKMNVSEKKYSNTTLKANDNQEFTNSSCVLSCKGLVSNDFLSQLLSFFNMRAIAIVGNSEAATFGASLSEQLICMSLNG 830 (1328)
T ss_pred cccccccccccCccccccccchhccccccccccccchhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhhcccc
Confidence 6433 2366999999999999999999999999999999988765
Q ss_pred --CCceEeeeecccccCCCC--CCccCChhhHHHHHHHHHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccE
Q 009559 292 --MKVAVVGVPKTIDNDILL--MDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDI 367 (532)
Q Consensus 292 --~~I~VIGIPKTIDNDI~~--tD~SfGFdTAv~~a~~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~ 367 (532)
.+|+||||||||||||++ +|.|||||||++.++++|.++..||.|++++|+|||+|||+|||||+++|||+| ||+
T Consensus 831 ~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~~~~se~Ign~l~Dtass~kr~~fVevMGR~ag~LAL~~gLatg-ani 909 (1328)
T PTZ00468 831 MKSEIPVVFVPVCLENSISHQMIETCIGFDSVTKSISTLVGNLLTDSASATKYWYFMKMIGDKTSNVALEVGIQTH-PNL 909 (1328)
T ss_pred ccCCCcEEEeCccccCCCCCCCccccccHHhHHHHHHHHHHHHHHHHHhcCCcEEEEEECCcChHHHHHHHHHhhC-CCE
Confidence 579999999999999987 999999999999999999888888888899999999999999999999999998 999
Q ss_pred EEcCCCC--------------CCCCC-hhHHHHHHHHHHh-ccCceEEEeeccccchhh---------cc----------
Q 009559 368 CLIPESP--------------FNLHG-PNGVLRHLKYLIE-TKGSAVVCVAEGAGQSLI---------KK---------- 412 (532)
Q Consensus 368 ~LIPE~p--------------f~leg-~~~ll~~lk~~~~-~kg~~VVVVAEGag~~l~---------~~---------- 412 (532)
|||||.+ ++++. .+.+++.|.+|.+ +|.|+|||||||+.+.+. .+
T Consensus 910 vlIpEe~~~~~~~~~~~~~~~~tL~~ii~~I~~~I~~R~~~Gk~ygvIlIsEGlie~ip~~~e~~~li~e~~a~~~~~~~ 989 (1328)
T PTZ00468 910 VVIPERYADSKLSVYGSEMAGVTLDDIITEICDIICLRSNQGNNFGGLLVSEGLFDQVYPTREYRKIFSRFSTQNLCNAS 989 (1328)
T ss_pred EEecCcccccccccccccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEcCChHHhCCCHHHHHHHHHHHhhhcccccc
Confidence 9999997 34321 2345566666664 789999999999853221 00
Q ss_pred ---------------------------------cccccCCCCccccch--HHHHHHHHHHHHHh---cCc---ceeEEEe
Q 009559 413 ---------------------------------TNATDASGNIVLGDV--GVLIQQETKKYFKE---IGV---PIDVKYI 451 (532)
Q Consensus 413 ---------------------------------~~~~DasGn~~l~dI--g~~L~~~I~~~f~~---~g~---~~~vk~i 451 (532)
....|..||++++.| -..|.+++++++++ .|. ++...+.
T Consensus 990 ~~~~~~~~~~~~Ls~~~~~~~~~f~~lp~~i~~qL~~~~dgn~~vs~IeTE~lL~~lV~~el~~rk~~g~y~g~f~~~~H 1069 (1328)
T PTZ00468 990 NSGNCEILGSESLSRYEKKVVEDFKLIFSDIDERLIENLINSRKICDVRTEIILSALVQKELKFRRSKNKIKNGMNPVCF 1069 (1328)
T ss_pred chhhhhhhhhccCCHHHHHHHHHHHhhhHHHHHHHHhccCCCcchhhhhHHHHHHHHHHHHHHHHHhcCccccccceeec
Confidence 001334488888876 35778888777643 232 4555566
Q ss_pred CCCceeccCCCCchhHHHHHHhhHHHHHhHhcCC-ccEEEEEECC-------eeEEechhhHhcC
Q 009559 452 DPTYMIRACRANASDGILCTVLGQNAVHGAFAGF-SGITVGLCNT-------HYAYFPIPEVISY 508 (532)
Q Consensus 452 dpgy~iRs~~p~a~D~i~c~~LG~~AV~~a~aG~-Tg~mVgi~n~-------~~~~vPi~ev~~~ 508 (532)
-.||..||+-|+-||+.||+.||+.|..++.+|. ||+|.++.|- +...+||..++.-
T Consensus 1070 ffGYegR~~~Ps~FD~~y~y~lG~~A~~li~~g~~~Gym~~i~nl~~~~~~W~~~~iPlt~mm~~ 1134 (1328)
T PTZ00468 1070 SFTDQVRACIPSDFDSTLGLMYGMLASKIINSNLVGGYVTGIKGVLSQIDSWNMYAIPISSLMTL 1134 (1328)
T ss_pred cccccccCCCCCcCchHHHHHHHHHHHHHHHCCCCceEEEEecCccCCHHHheeCccchHHhhCc
Confidence 6899999999999999999999999999999999 6999999984 4577999998873
No 28
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-60 Score=519.13 Aligned_cols=430 Identities=34% Similarity=0.446 Sum_probs=385.4
Q ss_pred cCCcccccCCCCCCCCCcccccCCCCcccCCCCCCCCCcccCCcccCCCeeeeeeeccCCCCCCCCcccccccchhhhhh
Q 009559 80 SLPHITDIFRDATPIPSTFCLRMRTPVTEDFADGYPSDEKWHGYINNNDRVLLKVINFSSPTSAGAECIDRDCTWVEQWV 159 (532)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (532)
..++..+++|+++.++++ +..+ ..|...+ ++|+..+|.|...+..--...+ |...++
T Consensus 49 ~~w~~v~~~~~lggt~~g--------~ar~--~~f~~~~--gr~~aa~~~i~~~i~~l~~~gg-----------dgsl~g 105 (666)
T KOG2440|consen 49 AQWLRVSYILSLGGTLIG--------TARC--KAFRGRE--GRLAAADNLIARGIPNLVVIGG-----------DGSLTG 105 (666)
T ss_pred cchhhhCCcccCCCcccc--------cccc--ccccccc--ceeccchhHHHhhcCeeEecCC-----------ccchhH
Confidence 456777888888888773 3333 4556555 8899999888766543111111 234789
Q ss_pred hhcCCCcccccCCCCcEEEEEeCCCCcchHHHHHHHHHHHH--HHcCCceEEEEccc----------------ccccccC
Q 009559 160 HRAGPREEIYFKPEEVKAAIVTCGGLCPGLNDVIRHIVITL--EIYGVKNIVGIPFG----------------YRGFCDK 221 (532)
Q Consensus 160 ~~agpr~~i~f~p~~~kiaIvt~GG~cPGlNavIr~iv~~l--~~ygv~~V~Gi~~G----------------y~GL~~~ 221 (532)
.+++|||++||.++.+|+|||||||+|||+|.+|+++|-.+ ..||+.+++|+.-+ ++||+.+
T Consensus 106 a~~~p~e~~~~~~elvk~giVt~g~~~pg~~lvI~giVgsidnd~~g~~~~iG~dsal~re~id~~~~ta~sh~RgFv~e 185 (666)
T KOG2440|consen 106 ARAFPREWIYLEEELVKAGIVTCGGLCPGGHLVIVGIVGSIDNDMYGTDMTIGIDSALHREAIDAITSTAQSHSRGFVAE 185 (666)
T ss_pred hhhCchhccccchHHhhcceeecccccccCccEEEEEeccccccccccceeeccccchhhhhhhhhhhhhccCcceEEee
Confidence 99999999999999999999999999999999999999998 46999899998877 9999988
Q ss_pred CceeecCCHHHHhhhhhcCCcceecccCCcc---HHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEee
Q 009559 222 ELTEMPLSRKVVQNIHLSGGSLLGVSRGAPT---VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVG 298 (532)
Q Consensus 222 ~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~---~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIG 298 (532)
..-.+.+....|.+|+..++++++++|..++ +.++++.++++|+|+||||||+++.++|..++|+++++.++..|++
T Consensus 186 vmgr~cg~lalv~~ia~~aD~i~~pe~~~~~~~q~~~~l~~~r~~Gln~viVigG~~~~~ga~i~ae~vk~~~~k~lv~g 265 (666)
T KOG2440|consen 186 VMGRHCGYLALVAAIAGGADTIFIPERPGEDPEQLCEILDSIRKRGLNIVIVIGGAIDNTGAPIIAEEVKERKLKVLVVG 265 (666)
T ss_pred ehhhccchHHHHHHhhcCCCEEEecCCCCCCHHHHHHHHHHHHhCCCCEEEEEecccCCCCCcccHHHHHHhhhheeeec
Confidence 7655668899999999999999999999988 7889999999999999999999999999999999999999999999
Q ss_pred eecccccCCCCCCccCChh--hHHHHHHHHHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCC---
Q 009559 299 VPKTIDNDILLMDKTFGFD--TAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPES--- 373 (532)
Q Consensus 299 IPKTIDNDI~~tD~SfGFd--TAv~~a~~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~--- 373 (532)
+||||||||+-.+.++||| ||++++++||.+++.+|.|+.|++++|++|||+|+|||++++||+++.|+|++||.
T Consensus 266 ~p~TilGdvqrgg~p~afDr~ta~~~g~eAI~a~l~~a~s~~~g~~~VRlmgr~~~~it~~~tla~~~~d~~l~~elr~~ 345 (666)
T KOG2440|consen 266 VPKTILGDVQRGGVPSAFDRITACEMGQEAINAALEEAESAENGNGIVRLMGRESVHITLEATLASRDKDFCLAPELRGR 345 (666)
T ss_pred ceeeecCccccCCcccccchHHHHHHHHHHHHHHHhhchhhcccceeEEehhHHHHHHHHHHHHhcCccceeehhhhcch
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred ----------------------CCCCC--ChhHHHHHHHHHHhccCceEEEeeccccchhhccc-----ccccCCCCccc
Q 009559 374 ----------------------PFNLH--GPNGVLRHLKYLIETKGSAVVCVAEGAGQSLIKKT-----NATDASGNIVL 424 (532)
Q Consensus 374 ----------------------pf~le--g~~~ll~~lk~~~~~kg~~VVVVAEGag~~l~~~~-----~~~DasGn~~l 424 (532)
||+.+ +....+.....++....|++|++||++|++++... ...|++++..+
T Consensus 346 ~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ii~~g~~~~~lnaa~~~~v~~a~~~G~~~~~i~~~~~gl~~d~~~~~~~ 425 (666)
T KOG2440|consen 346 KFTLNLNTYKILDVVDPRAEQDPFYGEIPGAIGLFGAPAAGLNAAGHSVLRYAEGAGQDVIAISNGFEGLAKDALGELIW 425 (666)
T ss_pred hhhhhhhHHhhhhccccccccCCCCceeccceeeechhhhHHHHHHHHHHHHhhhcCceeEeeccchhhhhhhhhhhhHH
Confidence 88877 55556678888999999999999999999877553 23599999999
Q ss_pred cchHHHHHHHHHHHHHhcCc--ceeEEEeCCCceeccCCCCchhHHHHHHhhHHHHHhHhcCCccEEEEEECCeeEEech
Q 009559 425 GDVGVLIQQETKKYFKEIGV--PIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHGAFAGFSGITVGLCNTHYAYFPI 502 (532)
Q Consensus 425 ~dIg~~L~~~I~~~f~~~g~--~~~vk~idpgy~iRs~~p~a~D~i~c~~LG~~AV~~a~aG~Tg~mVgi~n~~~~~vPi 502 (532)
.|++.|+.+..++++.+... +.+++||+|.|++|..+.++.|-.||..+++.++|++++++|++.+++++....+.|.
T Consensus 426 ~dv~~w~~~ggs~~gtk~~~~e~~~~~~I~~~~~~r~i~gl~~~ggf~a~~~~~~l~g~~~~yt~f~i~~v~ip~t~snn 505 (666)
T KOG2440|consen 426 KDVGLWLSQGGSALGTKRETPEKMDLKYIAPTLMKRKIDGLAIDGGFEALLAQSALHGARAGYTGFDIPMVNIPATYSNN 505 (666)
T ss_pred HHhhcccccCchhheecccCcccccHHHhHHHHHHhccccceeecchHHHHHHHHHhhhhcCCCCcccceEEeeeeecCC
Confidence 99999999999999976653 4689999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhcCCCcCCCCcHHHHHHHHhcCCCCCC
Q 009559 503 PEVISYPRAVDPNSRMWHRCLTSTGQPDFI 532 (532)
Q Consensus 503 ~ev~~~~k~vd~~~~~w~~~l~~tgQp~f~ 532 (532)
...++....+|+..++|.+++++|.||.|+
T Consensus 506 vpgt~~s~gvdt~~N~~~~~~d~t~Q~a~~ 535 (666)
T KOG2440|consen 506 VPGTEFSLGVDTALNAWARVCDSTKQSAFG 535 (666)
T ss_pred ccccccccccchhHhhhhhhhhhccCCccc
Confidence 999999999999999999999999999984
No 29
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-36 Score=333.29 Aligned_cols=298 Identities=28% Similarity=0.357 Sum_probs=247.0
Q ss_pred EEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc-----cH
Q 009559 179 IVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP-----TV 253 (532)
Q Consensus 179 Ivt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~-----~~ 253 (532)
|+||||++||||+++|++++.+...|. ++|+|+.||.|++++.....+++|+.|+.|...||+++||.|... ..
T Consensus 1 v~tsggd~~gmnaavr~~vr~~i~~g~-~~~~i~egy~gl~~g~~~i~e~~w~~v~~~~~lggt~~g~ar~~~f~~~~gr 79 (666)
T KOG2440|consen 1 VLTSGGDSQGMNAAVRAVVRMGIYRGC-KVYLIYEGYEGLVRGGDSIKEAQWLRVSYILSLGGTLIGTARCKAFRGREGR 79 (666)
T ss_pred CcCCCCCCCCccHHHHHHHHhccccCc-eEEEEecccccccccccchhhcchhhhCCcccCCCcccccccccccccccce
Confidence 689999999999999999999888887 699999999999997744456899999999999999999999754 34
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHH--------H---------hcCCCceEeeeecccccCCCCCCccCCh
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNEC--------R---------KRRMKVAVVGVPKTIDNDILLMDKTFGF 316 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~--------~---------kr~~~I~VIGIPKTIDNDI~~tD~SfGF 316 (532)
......+-+.+|+.|+++||||++++|...-+|. + ..+....++||+.|||||+.++|.++|-
T Consensus 80 ~~aa~~~i~~~i~~l~~~ggdgsl~ga~~~p~e~~~~~~elvk~giVt~g~~~pg~~lvI~giVgsidnd~~g~~~~iG~ 159 (666)
T KOG2440|consen 80 LAAADNLIARGIPNLVVIGGDGSLTGARAFPREWIYLEEELVKAGIVTCGGLCPGGHLVIVGIVGSIDNDMYGTDMTIGI 159 (666)
T ss_pred eccchhHHHhhcCeeEecCCccchhHhhhCchhccccchHHhhcceeecccccccCccEEEEEeccccccccccceeecc
Confidence 5677888899999999999999999999876541 1 2466789999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccCc
Q 009559 317 DTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGS 396 (532)
Q Consensus 317 dTAv~~a~~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg~ 396 (532)
|||+.. ++|+.+..+|.| +.|-|++|+|||+|||+|+.+++|++ +|++++||.|-.- ++.+++.+... +++|.
T Consensus 160 dsal~r--e~id~~~~ta~s-h~RgFv~evmgr~cg~lalv~~ia~~-aD~i~~pe~~~~~--~~q~~~~l~~~-r~~Gl 232 (666)
T KOG2440|consen 160 DSALHR--EAIDAITSTAQS-HSRGFVAEVMGRHCGYLALVAAIAGG-ADTIFIPERPGED--PEQLCEILDSI-RKRGL 232 (666)
T ss_pred ccchhh--hhhhhhhhhhcc-CcceEEeeehhhccchHHHHHHhhcC-CCEEEecCCCCCC--HHHHHHHHHHH-HhCCC
Confidence 999999 999999999998 56788999999999999999999998 9999999998764 55666666544 45668
Q ss_pred eEEEeeccccchhhcccccccCCCCccccchHHHHHHHHHHHHHh-cCcceeEEEeCCCceeccCCCCchhHHHHHHhhH
Q 009559 397 AVVCVAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKE-IGVPIDVKYIDPTYMIRACRANASDGILCTVLGQ 475 (532)
Q Consensus 397 ~VVVVAEGag~~l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~-~g~~~~vk~idpgy~iRs~~p~a~D~i~c~~LG~ 475 (532)
-+|+|+||++. ..|++. +.+++++...+ .+ +.++....+++||+..|+++|+++|.++|+
T Consensus 233 n~viVigG~~~----------~~ga~i-------~ae~vk~~~~k~lv--~g~p~TilGdvqrgg~p~afDr~ta~~~g~ 293 (666)
T KOG2440|consen 233 NIVIVIGGAID----------NTGAPI-------IAEEVKERKLKVLV--VGVPKTILGDVQRGGVPSAFDRITACEMGQ 293 (666)
T ss_pred CEEEEEecccC----------CCCCcc-------cHHHHHHhhhheee--ecceeeecCccccCCcccccchHHHHHHHH
Confidence 89999999973 223322 33344433211 23 345555579999999999999999999999
Q ss_pred HHHHhHhcCCccEEEEEECCeeEEechhhHh
Q 009559 476 NAVHGAFAGFSGITVGLCNTHYAYFPIPEVI 506 (532)
Q Consensus 476 ~AV~~a~aG~Tg~mVgi~n~~~~~vPi~ev~ 506 (532)
.||.+++..... ++...+++-+|+.+..
T Consensus 294 eAI~a~l~~a~s---~~~g~~~VRlmgr~~~ 321 (666)
T KOG2440|consen 294 EAINAALEEAES---AENGNGIVRLMGRESV 321 (666)
T ss_pred HHHHHHHhhchh---hcccceeEEehhHHHH
Confidence 999999987665 5666778888887654
No 30
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=93.32 E-value=0.23 Score=50.52 Aligned_cols=60 Identities=18% Similarity=0.240 Sum_probs=41.9
Q ss_pred HHHHHHhCC------cEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhH---HHHHHHHH
Q 009559 257 VDSMEERGI------NMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTA---VEEAQRAI 327 (532)
Q Consensus 257 vd~L~~~gI------d~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTA---v~~a~~aI 327 (532)
-+..+++++ |.+++||||||+-.|..... +..++|+||-. -++||-|. .+...+++
T Consensus 12 ~~~~~~~~~~~~~~~Dlvi~iGGDGTlL~a~~~~~-----~~~~PvlGIN~----------G~lGFL~~~~~~~e~~~~l 76 (246)
T PRK04761 12 EELVKRYGDVPIEEADVIVALGGDGFMLQTLHRYM-----NSGKPVYGMNR----------GSVGFLMNEYSEDDLLERI 76 (246)
T ss_pred HHHHHHhCCCCcccCCEEEEECCCHHHHHHHHHhc-----CCCCeEEEEeC----------CCCCcccCCCCHHHHHHHH
Confidence 344556677 99999999999976654432 24689999954 26899885 35566666
Q ss_pred HHHH
Q 009559 328 NSAY 331 (532)
Q Consensus 328 ~~a~ 331 (532)
.++.
T Consensus 77 ~~~~ 80 (246)
T PRK04761 77 AAAE 80 (246)
T ss_pred HHhh
Confidence 6654
No 31
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=93.20 E-value=3.1 Score=39.47 Aligned_cols=126 Identities=15% Similarity=0.121 Sum_probs=75.0
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHH
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSE 255 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ 255 (532)
|||+++.+-..|-.+.++.++-..+..+|+. +.-+ . +........+
T Consensus 1 ~ig~v~~~~~~~~~~~~~~g~~~~~~~~g~~-l~~~---------------~------------------~~~~~~~~~~ 46 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKAAGYQ-VLLA---------------N------------------SQNDAEKQLS 46 (264)
T ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHHcCCe-EEEE---------------e------------------CCCCHHHHHH
Confidence 5899998877899999999998888787762 2211 0 0000112456
Q ss_pred HHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHHHHHhhh
Q 009559 256 IVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAH 335 (532)
Q Consensus 256 ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~a~~eA~ 335 (532)
.++.+.+.+++++++.+.+.+... ..+.+.+ .++++|.+-.+.++. ....++++|.. +.+..+.+.+....
T Consensus 47 ~~~~~~~~~~d~ii~~~~~~~~~~---~~~~l~~--~~ip~v~~~~~~~~~--~~~~~v~~d~~-~~~~~~~~~l~~~g- 117 (264)
T cd01537 47 ALENLIARGVDGIIIAPSDLTAPT---IVKLARK--AGIPVVLVDRDIPDG--DRVPSVGSDNE-QAGYLAGEHLAEKG- 117 (264)
T ss_pred HHHHHHHcCCCEEEEecCCCcchh---HHHHhhh--cCCCEEEeccCCCCC--cccceEecCcH-HHHHHHHHHHHHhc-
Confidence 677777889999999988876543 2233333 357788876666541 12235555543 23333333333222
Q ss_pred hccccEEEEEe
Q 009559 336 SAYHGIGIVKL 346 (532)
Q Consensus 336 S~~~~V~vVev 346 (532)
+++|.++--
T Consensus 118 --~~~i~~i~~ 126 (264)
T cd01537 118 --HRRIALLAG 126 (264)
T ss_pred --CCcEEEEEC
Confidence 456777643
No 32
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=93.16 E-value=9.2 Score=37.41 Aligned_cols=92 Identities=13% Similarity=0.045 Sum_probs=55.0
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHH
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSE 255 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ 255 (532)
|||++.-.=.-|....++.++-+.+..+|+. +.-.. .+ +.+......+
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~g~~-~~~~~---------------~~----------------~~~~~~~~~~ 48 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKKLGVS-VDIQA---------------AP----------------SEGDQQGQLS 48 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHHhCCe-EEEEc---------------cC----------------CCCCHHHHHH
Confidence 5788886666788888888888888777763 32100 00 0111112346
Q ss_pred HHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeeccc
Q 009559 256 IVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTI 303 (532)
Q Consensus 256 ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTI 303 (532)
+++.|...+++++++.+.+.+... ...++++++ +++||.+-..+
T Consensus 49 ~i~~l~~~~vdgiIi~~~~~~~~~--~~~~~~~~~--~iPvV~~~~~~ 92 (275)
T cd06320 49 IAENMINKGYKGLLFSPISDVNLV--PAVERAKKK--GIPVVNVNDKL 92 (275)
T ss_pred HHHHHHHhCCCEEEECCCChHHhH--HHHHHHHHC--CCeEEEECCCC
Confidence 788888899999998876543211 122444443 57787664433
No 33
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.08 E-value=0.24 Score=51.48 Aligned_cols=53 Identities=25% Similarity=0.397 Sum_probs=39.0
Q ss_pred CCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHH--HHHHHHHHHHH
Q 009559 264 GINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAV--EEAQRAINSAY 331 (532)
Q Consensus 264 gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv--~~a~~aI~~a~ 331 (532)
+.|.+++||||||+-.|..... ..+++|+||- --++||-|.+ +.+.++++++.
T Consensus 64 ~~Dlvi~iGGDGT~L~aa~~~~-----~~~~PilGIN----------~G~lGFLt~~~~~~~~~~l~~i~ 118 (287)
T PRK14077 64 ISDFLISLGGDGTLISLCRKAA-----EYDKFVLGIH----------AGHLGFLTDITVDEAEKFFQAFF 118 (287)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-----CCCCcEEEEe----------CCCcccCCcCCHHHHHHHHHHHH
Confidence 6899999999999755544432 2478999993 2479999985 56677777764
No 34
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=93.00 E-value=3.2 Score=42.14 Aligned_cols=174 Identities=17% Similarity=0.192 Sum_probs=102.9
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHH
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSE 255 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ 255 (532)
.||||.---.-|=.-.+++++-+.+.++|+. + +|.++....+.++
T Consensus 3 ~IGvivp~~~npff~~ii~gIe~~a~~~Gy~-l----------------------------------~l~~t~~~~~~e~ 47 (279)
T PF00532_consen 3 TIGVIVPDISNPFFAEIIRGIEQEAREHGYQ-L----------------------------------LLCNTGDDEEKEE 47 (279)
T ss_dssp EEEEEESSSTSHHHHHHHHHHHHHHHHTTCE-E----------------------------------EEEEETTTHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHHcCCE-E----------------------------------EEecCCCchHHHH
Confidence 4677766666666677777777777777762 3 2333344455568
Q ss_pred HHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccC--CCCCCccCChhhHHHHHHHHHHHHHHh
Q 009559 256 IVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDND--ILLMDKTFGFDTAVEEAQRAINSAYIE 333 (532)
Q Consensus 256 ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDND--I~~tD~SfGFdTAv~~a~~aI~~a~~e 333 (532)
.++.|.++++|++++.+-......-..+. + .+++||.+=.+.+++ ++.+ .+-.-.|...+++.+-.
T Consensus 48 ~i~~l~~~~vDGiI~~s~~~~~~~l~~~~---~---~~iPvV~~~~~~~~~~~~~~V--~~D~~~a~~~a~~~Li~---- 115 (279)
T PF00532_consen 48 YIELLLQRRVDGIILASSENDDEELRRLI---K---SGIPVVLIDRYIDNPEGVPSV--YIDNYEAGYEATEYLIK---- 115 (279)
T ss_dssp HHHHHHHTTSSEEEEESSSCTCHHHHHHH---H---TTSEEEEESS-SCTTCTSCEE--EEEHHHHHHHHHHHHHH----
T ss_pred HHHHHHhcCCCEEEEecccCChHHHHHHH---H---cCCCEEEEEeccCCcccCCEE--EEcchHHHHHHHHHHHh----
Confidence 89999999999999997766633333332 2 268899888887776 3322 11122333333333222
Q ss_pred hhhcccc-EEEEEe-------cCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccCc--eEEEee
Q 009559 334 AHSAYHG-IGIVKL-------MGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGS--AVVCVA 402 (532)
Q Consensus 334 A~S~~~~-V~vVev-------MGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg~--~VVVVA 402 (532)
.+ +++ |+++-. .-|..||..+.....- ..+-.+|-+..++.+ .=.+.+++.++...- +|++.+
T Consensus 116 -~G-h~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl-~~~~~~i~~~~~~~~---~g~~~~~~ll~~~p~idai~~~n 188 (279)
T PF00532_consen 116 -KG-HRRPIAFIGGPEDSSTSRERLQGYRDALKEAGL-PIDEEWIFEGDFDYE---SGYEAARELLESHPDIDAIFCAN 188 (279)
T ss_dssp -TT-CCSTEEEEEESTTTHHHHHHHHHHHHHHHHTTS-CEEEEEEEESSSSHH---HHHHHHHHHHHTSTT-SEEEESS
T ss_pred -cc-cCCeEEEEecCcchHHHHHHHHHHHHHHHHcCC-CCCcccccccCCCHH---HHHHHHHHHHhhCCCCEEEEEeC
Confidence 22 567 777765 3366688765444321 245566666667654 344666777776655 776654
No 35
>PLN02929 NADH kinase
Probab=92.81 E-value=0.26 Score=51.64 Aligned_cols=63 Identities=21% Similarity=0.344 Sum_probs=39.7
Q ss_pred hCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeec---ccccCCC-C----CCccCChhhHH--HHHHHHHHHHH
Q 009559 263 RGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPK---TIDNDIL-L----MDKTFGFDTAV--EEAQRAINSAY 331 (532)
Q Consensus 263 ~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPK---TIDNDI~-~----tD~SfGFdTAv--~~a~~aI~~a~ 331 (532)
.+.|.+++||||||+-.|.... ..+++|+||-. +.|.--. . ...+.||-|++ +.+.++++++.
T Consensus 63 ~~~Dlvi~lGGDGT~L~aa~~~------~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il 135 (301)
T PLN02929 63 RDVDLVVAVGGDGTLLQASHFL------DDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVL 135 (301)
T ss_pred CCCCEEEEECCcHHHHHHHHHc------CCCCcEEEEECCCcccccccccccccccccCccccccCCHHHHHHHHHHHH
Confidence 3568999999999996655433 24689999943 2222100 0 11389999984 45556666654
No 36
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.70 E-value=0.35 Score=49.68 Aligned_cols=55 Identities=25% Similarity=0.328 Sum_probs=38.4
Q ss_pred CCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHH--HHHHHHHHHH
Q 009559 264 GINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVE--EAQRAINSAY 331 (532)
Q Consensus 264 gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~--~a~~aI~~a~ 331 (532)
+.|.+++||||||+-.|.+... ..-.+++++||.- -++||-|.++ ...++++++.
T Consensus 35 ~~Dlvi~iGGDGT~L~a~~~~~---~~~~~iPilGIN~----------G~lGFL~~~~~~~~~~~l~~i~ 91 (265)
T PRK04885 35 NPDIVISVGGDGTLLSAFHRYE---NQLDKVRFVGVHT----------GHLGFYTDWRPFEVDKLVIALA 91 (265)
T ss_pred CCCEEEEECCcHHHHHHHHHhc---ccCCCCeEEEEeC----------CCceecccCCHHHHHHHHHHHH
Confidence 4689999999999966554432 1114789999952 4699999754 4666666654
No 37
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.68 E-value=0.26 Score=50.57 Aligned_cols=61 Identities=26% Similarity=0.424 Sum_probs=40.6
Q ss_pred HHHHHHHHhCC-----cEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHH--HHHH-H
Q 009559 255 EIVDSMEERGI-----NMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVE--EAQR-A 326 (532)
Q Consensus 255 ~ivd~L~~~gI-----d~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~--~a~~-a 326 (532)
++.+.++.+++ |.+++||||||+-.|..... ..+++|+||-- -++||-|.++ .+.+ .
T Consensus 19 ~l~~~~~~~~~~~~~~D~vi~iGGDGT~L~a~~~~~-----~~~iPilGIN~----------G~lGFL~~~~~~~~~~~~ 83 (259)
T PRK00561 19 KLKKVLKKKLAVEDGADYLFVLGGDGFFVSTAANYN-----CAGCKVVGINT----------GHLGFYTSFNETDLDQNF 83 (259)
T ss_pred HHHHHHhhCCCccCCCCEEEEECCcHHHHHHHHHhc-----CCCCcEEEEec----------CCCccccccCHHHHHHHH
Confidence 34444544555 99999999999976655442 35789999941 2699999654 4444 4
Q ss_pred HHHH
Q 009559 327 INSA 330 (532)
Q Consensus 327 I~~a 330 (532)
++.+
T Consensus 84 ~~~l 87 (259)
T PRK00561 84 ANKL 87 (259)
T ss_pred HHHH
Confidence 4444
No 38
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=91.61 E-value=0.2 Score=54.54 Aligned_cols=123 Identities=20% Similarity=0.277 Sum_probs=73.3
Q ss_pred CCCcEEEEEeCCCCcchHHH-HHHHHHHHHHHcCCc-----------eEEEEccccccccc-CCceeecCCHHHHhhhhh
Q 009559 172 PEEVKAAIVTCGGLCPGLND-VIRHIVITLEIYGVK-----------NIVGIPFGYRGFCD-KELTEMPLSRKVVQNIHL 238 (532)
Q Consensus 172 p~~~kiaIvt~GG~cPGlNa-vIr~iv~~l~~ygv~-----------~V~Gi~~Gy~GL~~-~~~~~i~Lt~~~V~~i~~ 238 (532)
-++.|||+||+||+.|=-|. -|.+. .+..||.. +..-++.||.--+- .+.. .-+.-+.+..+..
T Consensus 221 L~~akIALvTsgGivPkgnPd~i~s~--~A~~yg~Y~i~~~~~l~~~~~~~~HgGYD~~~~n~Dpn-~v~PlD~LreLe~ 297 (431)
T TIGR01917 221 ISKAKIAIVTSGGIVPKGNPDHIESS--SASKYGKYDIDGFDDLSEADHETAHGGHDPTYANEDAD-RVIPVDVLRDLEK 297 (431)
T ss_pred hhhCEEEEEecCCcccCCCCCccccc--cCCCceEEeCCccCcCCccceEEeccccChHHHhcCCC-eeeeHHHHHHHHH
Confidence 46789999999999997775 22211 11233321 22334566655442 2221 1133445555555
Q ss_pred cC--C----cce-----ecccCC--ccHHHHHHHHHHhCCcEEEEeCChhh-HHHHHHHHHHHHhcCCCceEeee
Q 009559 239 SG--G----SLL-----GVSRGA--PTVSEIVDSMEERGINMLFVLGGNGT-HAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 239 ~G--G----SiL-----GTSR~~--~~~~~ivd~L~~~gId~L~vIGGdGT-~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
.| | .+. ||++.. ..-++|.+.|++.++|+++..-.=|| .|.+..+.+++++.| |+||+|
T Consensus 298 EG~IG~l~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~G--IPvV~i 370 (431)
T TIGR01917 298 EGKIGELFKYFYSTTGNGTAVANSKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAG--IPVVHI 370 (431)
T ss_pred cCCcccccCeeEEccCCCccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcC--CCEEEE
Confidence 54 2 122 222221 24578999999999999999976665 455667788999877 555554
No 39
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.57 E-value=0.51 Score=48.51 Aligned_cols=55 Identities=20% Similarity=0.371 Sum_probs=37.0
Q ss_pred CCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHH--HHHHHHHHHHH
Q 009559 264 GINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAV--EEAQRAINSAY 331 (532)
Q Consensus 264 gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv--~~a~~aI~~a~ 331 (532)
+.|.+++||||||+-.|...... . .+++|+||.- +-++||-|.+ +...++++++.
T Consensus 39 ~~D~vi~lGGDGT~L~a~~~~~~---~-~~~pilgIn~---------~G~lGFL~~~~~~~~~~~l~~i~ 95 (264)
T PRK03501 39 NANIIVSIGGDGTFLQAVRKTGF---R-EDCLYAGIST---------KDQLGFYCDFHIDDLDKMIQAIT 95 (264)
T ss_pred CccEEEEECCcHHHHHHHHHhcc---c-CCCeEEeEec---------CCCCeEcccCCHHHHHHHHHHHH
Confidence 46899999999999666544321 1 1578889843 2589998764 45566666653
No 40
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=91.37 E-value=0.2 Score=53.18 Aligned_cols=52 Identities=27% Similarity=0.537 Sum_probs=41.1
Q ss_pred cccCCccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeeccccc
Q 009559 246 VSRGAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDN 305 (532)
Q Consensus 246 TSR~~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDN 305 (532)
|+| .|+-..++.+.++|+|.+++.|||||.+... +.. +-+++|+|||.=.-|
T Consensus 84 tTa--~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa---~av---~~~vPvLGipaGvk~ 135 (355)
T COG3199 84 TTA--EDTINAVRRMVERGVDLIVFAGGDGTARDVA---EAV---GADVPVLGIPAGVKN 135 (355)
T ss_pred ccH--HHHHHHHHHHHhcCceEEEEeCCCccHHHHH---hhc---cCCCceEeeccccce
Confidence 444 4778899999999999999999999887644 332 457999999976544
No 41
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=91.23 E-value=0.17 Score=51.94 Aligned_cols=63 Identities=27% Similarity=0.572 Sum_probs=43.8
Q ss_pred HHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHH--HHHHHHHHHHHH
Q 009559 255 EIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAV--EEAQRAINSAYI 332 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv--~~a~~aI~~a~~ 332 (532)
...+.+...+.|.++++|||||+..|.+... +.+++|+||+. -+.||-|.+ +.+.+++..+..
T Consensus 67 ~~~~~~~~~~~D~ii~lGGDGT~L~~~~~~~-----~~~~Pilgin~----------G~lgfl~~~~~~~~~~~l~~~~~ 131 (285)
T PF01513_consen 67 NALEEMLEEGVDLIIVLGGDGTFLRAARLFG-----DYDIPILGINT----------GTLGFLTEFEPEDIEEALEKILA 131 (285)
T ss_dssp ECCHHHHCCCSSEEEEEESHHHHHHHHHHCT-----TST-EEEEEES----------SSSTSSSSEEGCGHHHHHHHHHH
T ss_pred hhhhhhcccCCCEEEEECCCHHHHHHHHHhc-----cCCCcEEeecC----------CCccccccCCHHHHHHHHHHHhc
Confidence 3445567789999999999999988776553 25799999984 367777664 345555555543
No 42
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.15 E-value=0.65 Score=47.36 Aligned_cols=51 Identities=24% Similarity=0.373 Sum_probs=36.9
Q ss_pred hCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHH--HHHHHHHHHH
Q 009559 263 RGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVE--EAQRAINSAY 331 (532)
Q Consensus 263 ~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~--~a~~aI~~a~ 331 (532)
.+.|.+++||||||+-.|.... +++|+||- --++||-|.++ ...++++++.
T Consensus 40 ~~~d~vi~iGGDGT~L~a~~~~--------~~Pilgin----------~G~lGfl~~~~~~~~~~~l~~~~ 92 (256)
T PRK14075 40 VTADLIIVVGGDGTVLKAAKKV--------GTPLVGFK----------AGRLGFLSSYTLEEIDRFLEDLK 92 (256)
T ss_pred CCCCEEEEECCcHHHHHHHHHc--------CCCEEEEe----------CCCCccccccCHHHHHHHHHHHH
Confidence 3679999999999997664432 68899995 23699999855 3455666653
No 43
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.49 E-value=0.39 Score=49.98 Aligned_cols=116 Identities=17% Similarity=0.220 Sum_probs=67.1
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc-cH
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP-TV 253 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~-~~ 253 (532)
|+|||+.-= ..|..-..+..+...+..+|+ +++-... ..+.+ ...+ .+..+.... +.
T Consensus 1 m~igii~~~-~~~~~~~~~~~i~~~l~~~g~-~v~~~~~---------------~~~~~----~~~~-~~~~~~~~~~~~ 58 (292)
T PRK01911 1 MKIAIFGQT-YQESASPYIQELFDELEERGA-EVLIEEK---------------FLDFL----KQDL-KFHPSYDTFSDN 58 (292)
T ss_pred CEEEEEeCC-CCHHHHHHHHHHHHHHHHCCC-EEEEecc---------------hhhhh----cccc-ccccccccccch
Confidence 578887542 347777888888888888888 3532110 00000 0000 000000000 00
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHH--HHHHHHHHHHH
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAV--EEAQRAINSAY 331 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv--~~a~~aI~~a~ 331 (532)
+.+. .+.|.++++|||||+-.|.+... ..+++|+||-. -++||-|.+ +.+.++++.+.
T Consensus 59 ----~~~~-~~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGIN~----------G~lGFLt~~~~~~~~~~l~~i~ 118 (292)
T PRK01911 59 ----EELD-GSADMVISIGGDGTFLRTATYVG-----NSNIPILGINT----------GRLGFLATVSKEEIEETIDELL 118 (292)
T ss_pred ----hhcc-cCCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEec----------CCCCcccccCHHHHHHHHHHHH
Confidence 1111 26899999999999866555432 24789999953 368999986 46677777764
Q ss_pred H
Q 009559 332 I 332 (532)
Q Consensus 332 ~ 332 (532)
.
T Consensus 119 ~ 119 (292)
T PRK01911 119 N 119 (292)
T ss_pred c
Confidence 3
No 44
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=90.45 E-value=0.46 Score=51.81 Aligned_cols=123 Identities=20% Similarity=0.288 Sum_probs=73.2
Q ss_pred CCCcEEEEEeCCCCcchHH-HHHHHHHHHHHHcCCc-----------eEEEEccccccccc-CCceeecCCHHHHhhhhh
Q 009559 172 PEEVKAAIVTCGGLCPGLN-DVIRHIVITLEIYGVK-----------NIVGIPFGYRGFCD-KELTEMPLSRKVVQNIHL 238 (532)
Q Consensus 172 p~~~kiaIvt~GG~cPGlN-avIr~iv~~l~~ygv~-----------~V~Gi~~Gy~GL~~-~~~~~i~Lt~~~V~~i~~ 238 (532)
-++.|||+||+||+.|=-| +-|.+.- +..||.. +..-++.||.--+- .+... -+.-+.+..+..
T Consensus 221 L~~akIALVTsgGivPkgnPd~i~ss~--A~~yg~Y~i~g~~~l~~~~~~~~HgGYD~~~~n~Dpn~-v~PlD~LreLek 297 (431)
T TIGR01918 221 LSKAKIAVVTSGGIVPKDNPDRIESSS--ASKYGMYDITGLDRLEGGVYETAHGGFDPAYANADPDR-VVPVDVLRDYEK 297 (431)
T ss_pred hhhCEEEEEecCCcccCCCCCcccccC--CCcceeEeCCCccccCccceEEeccccChHHHhcCCCe-eeeHHHHHHHHH
Confidence 3578999999999999888 3443211 1223321 12234556655442 22211 133345555555
Q ss_pred cC--C----cceec-----ccC--CccHHHHHHHHHHhCCcEEEEeCChhh-HHHHHHHHHHHHhcCCCceEeee
Q 009559 239 SG--G----SLLGV-----SRG--APTVSEIVDSMEERGINMLFVLGGNGT-HAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 239 ~G--G----SiLGT-----SR~--~~~~~~ivd~L~~~gId~L~vIGGdGT-~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
.| | .+.+| ++. ...-.+|++.|++.++|+++....=|| .+.+..+.+++++.| |+||+|
T Consensus 298 EG~IG~L~~~fyst~G~gt~~~~a~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~G--iPvv~~ 370 (431)
T TIGR01918 298 EGKIGELHEYFYSTVGNGTTVAESKQFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAG--IPVVHM 370 (431)
T ss_pred cCCcccccCeeEEcCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcC--CCEEEE
Confidence 44 2 12222 221 124578999999999999999977666 456667788999877 556555
No 45
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.97 E-value=0.47 Score=49.53 Aligned_cols=115 Identities=19% Similarity=0.278 Sum_probs=67.2
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHH
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVS 254 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~ 254 (532)
.||+|+.== ..|..-.....+...|..+|+ +++-.... . ..+....+. ..+. .. .+.+
T Consensus 6 ~~i~ii~~~-~~~~~~~~~~~l~~~L~~~g~-~v~~~~~~--------~-----~~~~~~~~~-~~~~----~~--~~~~ 63 (296)
T PRK04539 6 HNIGIVTRP-NTPDIQDTAHTLITFLKQHGF-TVYLDEVG--------I-----KEGCIYTQD-TVGC----HI--VNKT 63 (296)
T ss_pred CEEEEEecC-CCHHHHHHHHHHHHHHHHCCC-EEEEeccc--------c-----cccchhccc-cccc----cc--cchh
Confidence 468888542 447788888888888888888 45422110 0 000000000 0010 00 0111
Q ss_pred HHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHH--HHHHHHHHHHH
Q 009559 255 EIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAV--EEAQRAINSAY 331 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv--~~a~~aI~~a~ 331 (532)
. +. .++|.++++|||||+-.|..... ..+++|+||-. -++||-|.+ +.+.++++++.
T Consensus 64 ~----~~-~~~D~vi~lGGDGT~L~aa~~~~-----~~~~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~ 122 (296)
T PRK04539 64 E----LG-QYCDLVAVLGGDGTFLSVAREIA-----PRAVPIIGINQ----------GHLGFLTQIPREYMTDKLLPVL 122 (296)
T ss_pred h----cC-cCCCEEEEECCcHHHHHHHHHhc-----ccCCCEEEEec----------CCCeEeeccCHHHHHHHHHHHH
Confidence 1 11 26899999999999976665442 24789999952 369999984 45666676654
No 46
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.95 E-value=0.42 Score=50.15 Aligned_cols=54 Identities=30% Similarity=0.475 Sum_probs=40.5
Q ss_pred CCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHH--HHHHHHHHHHHH
Q 009559 264 GINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAV--EEAQRAINSAYI 332 (532)
Q Consensus 264 gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv--~~a~~aI~~a~~ 332 (532)
+.|.++++|||||+-.|..... ..+++|+||.- -++||-|.+ +.+.++++++..
T Consensus 72 ~~D~vi~lGGDGT~L~aar~~~-----~~~~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~ 127 (306)
T PRK03372 72 GCELVLVLGGDGTILRAAELAR-----AADVPVLGVNL----------GHVGFLAEAEAEDLDEAVERVVD 127 (306)
T ss_pred CCCEEEEEcCCHHHHHHHHHhc-----cCCCcEEEEec----------CCCceeccCCHHHHHHHHHHHHc
Confidence 6899999999999976665542 24689999963 478998875 556667776643
No 47
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.69 E-value=0.53 Score=49.36 Aligned_cols=53 Identities=23% Similarity=0.387 Sum_probs=38.9
Q ss_pred CCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHH--HHHHHHHHHHH
Q 009559 264 GINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAV--EEAQRAINSAY 331 (532)
Q Consensus 264 gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv--~~a~~aI~~a~ 331 (532)
++|.+++||||||+-.|..... ..+++|+||-. -++||-|.+ +.+.++++.+.
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~-----~~~iPilGIN~----------G~lGFLt~~~~~~~~~~l~~l~ 122 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLA-----PCGIPLLTINT----------GHLGFLTEAYLNQLDEAIDQVL 122 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhc-----CCCCcEEEEeC----------CCCcccccCCHHHHHHHHHHHH
Confidence 6899999999999976655432 35799999932 379999974 45556666653
No 48
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=89.63 E-value=26 Score=35.69 Aligned_cols=86 Identities=10% Similarity=0.199 Sum_probs=55.2
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHH
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVS 254 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~ 254 (532)
..||++...-.-|-.+.++.++...+..+|+. ++-+. +........
T Consensus 65 ~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g~~-~~~~~---------------------------------~~~~~~~~~ 110 (342)
T PRK10014 65 GVIGLIVRDLSAPFYAELTAGLTEALEAQGRM-VFLLQ---------------------------------GGKDGEQLA 110 (342)
T ss_pred CEEEEEeCCCccchHHHHHHHHHHHHHHcCCE-EEEEe---------------------------------CCCCHHHHH
Confidence 46899987777788999999999988888863 32100 111112234
Q ss_pred HHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 255 EIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
+.++.|...++|++++.+.+.... .+.+.+++. +++||.+
T Consensus 111 ~~~~~l~~~~vdgiIi~~~~~~~~---~~~~~l~~~--~iPvV~~ 150 (342)
T PRK10014 111 QRFSTLLNQGVDGVVIAGAAGSSD---DLREMAEEK--GIPVVFA 150 (342)
T ss_pred HHHHHHHhCCCCEEEEeCCCCCcH---HHHHHHhhc--CCCEEEE
Confidence 677788889999999998764322 222344443 4666654
No 49
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=89.52 E-value=22 Score=34.71 Aligned_cols=92 Identities=12% Similarity=0.136 Sum_probs=58.7
Q ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHH
Q 009559 177 AAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEI 256 (532)
Q Consensus 177 iaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~i 256 (532)
||||...=.-|-.+.+++++...+.++|+. ++-.. +........++
T Consensus 2 Igvv~~~~~~~~~~~~~~~i~~~a~~~g~~-~~~~~---------------------------------~~~~~~~~~~~ 47 (269)
T cd06281 2 IGCLVSDITNPLLAQLFSGAEDRLRAAGYS-LLIAN---------------------------------SLNDPERELEI 47 (269)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHcCCE-EEEEe---------------------------------CCCChHHHHHH
Confidence 788887767788999999999988888873 32100 11111123467
Q ss_pred HHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCC
Q 009559 257 VDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDI 307 (532)
Q Consensus 257 vd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI 307 (532)
++.|.+.++|++++.+++... ..+.+++++++ ++||.+=...++++
T Consensus 48 i~~l~~~~vdgii~~~~~~~~---~~~~~~~~~~~--ipvV~i~~~~~~~~ 93 (269)
T cd06281 48 LRSFEQRRMDGIIIAPGDERD---PELVDALASLD--LPIVLLDRDMGGGA 93 (269)
T ss_pred HHHHHHcCCCEEEEecCCCCc---HHHHHHHHhCC--CCEEEEecccCCCC
Confidence 788899999999999876432 22334444444 67776644444333
No 50
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=89.38 E-value=27 Score=35.59 Aligned_cols=69 Identities=7% Similarity=0.113 Sum_probs=47.3
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHH
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVS 254 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~ 254 (532)
..||++...-.-|=...+++++-..+..+|+. ++-+. +........
T Consensus 60 ~~i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~-~~~~~---------------------------------~~~~~~~~~ 105 (341)
T PRK10703 60 KSIGLLATSSEAPYFAEIIEAVEKNCYQKGYT-LILCN---------------------------------AWNNLEKQR 105 (341)
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHCCCE-EEEEe---------------------------------CCCCHHHHH
Confidence 47899988777788888999998888888873 32110 001111223
Q ss_pred HHHHHHHHhCCcEEEEeCChhhH
Q 009559 255 EIVDSMEERGINMLFVLGGNGTH 277 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdGT~ 277 (532)
+.++.|...++|++++.+++.+.
T Consensus 106 ~~i~~l~~~~vdgiii~~~~~~~ 128 (341)
T PRK10703 106 AYLSMLAQKRVDGLLVMCSEYPE 128 (341)
T ss_pred HHHHHHHHcCCCEEEEecCCCCH
Confidence 56677888999999999876443
No 51
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=88.71 E-value=25 Score=34.28 Aligned_cols=125 Identities=11% Similarity=0.043 Sum_probs=69.1
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHH--cCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc-c
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLEI--YGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP-T 252 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~~--ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~-~ 252 (532)
+||+|...=.-|-.+.+++++.+.+.. +|+ .++- ..+...+ .
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~~~~~-~~~~----------------------------------~~~~~~~~~ 45 (271)
T cd06321 1 KIGVSVGDLGNPFFVALAKGAEAAAKKLNPGV-KVTV----------------------------------VSADYDLNK 45 (271)
T ss_pred CeEEEecccCCHHHHHHHHHHHHHHHHhCCCe-EEEE----------------------------------ccCCCCHHH
Confidence 378888777788889999999998877 443 1211 0111111 2
Q ss_pred HHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHHHHH
Q 009559 253 VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYI 332 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~a~~ 332 (532)
..++++.+...++|++++.+.+... ....| ++++++ +++||.+=.. .+..+.++|+|.. ..+..+.+.+..
T Consensus 46 ~~~~i~~~~~~~~dgiIi~~~~~~~-~~~~i-~~~~~~--~ipvv~~~~~----~~~~~~~V~~d~~-~~g~~~~~~l~~ 116 (271)
T cd06321 46 QVSQIDNFIAAKVDLILLNAVDSKG-IAPAV-KRAQAA--GIVVVAVDVA----AEGADATVTTDNV-QAGEISCQYLAD 116 (271)
T ss_pred HHHHHHHHHHhCCCEEEEeCCChhH-hHHHH-HHHHHC--CCeEEEecCC----CCCccceeeechH-HHHHHHHHHHHH
Confidence 3356777888999999998866431 11223 444444 4677776332 2223345666642 223333333322
Q ss_pred hhhhccccEEEEE
Q 009559 333 EAHSAYHGIGIVK 345 (532)
Q Consensus 333 eA~S~~~~V~vVe 345 (532)
.+.. +.+|+++-
T Consensus 117 ~~~g-~~~i~~i~ 128 (271)
T cd06321 117 RLGG-KGNVAILN 128 (271)
T ss_pred HhCC-CceEEEEe
Confidence 2112 45677763
No 52
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.49 E-value=0.83 Score=47.57 Aligned_cols=109 Identities=18% Similarity=0.262 Sum_probs=63.4
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHH
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVS 254 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~ 254 (532)
.+|+|+.== .-|..-.....+...+.++|+ +++-...- .. .+ +...+ .. .+.+
T Consensus 6 ~~i~iv~~~-~~~~~~~~~~~i~~~l~~~g~-~v~~~~~~---------------~~---~~---~~~~~--~~--~~~~ 58 (292)
T PRK03378 6 KCIGIVGHP-RHPTALTTHEMLYHWLTSKGY-EVIVEQQI---------------AH---EL---QLKNV--KT--GTLA 58 (292)
T ss_pred CEEEEEEeC-CCHHHHHHHHHHHHHHHHCCC-EEEEecch---------------hh---hc---Ccccc--cc--cchh
Confidence 458888543 347777888888888888887 35321100 00 00 00000 00 0011
Q ss_pred HHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHH--HHHHHHHHH
Q 009559 255 EIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVE--EAQRAINSA 330 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~--~a~~aI~~a 330 (532)
. + ..+.|.+++||||||+-.|..... ..+++|+||-- -++||-|.++ .+.++++.+
T Consensus 59 ~----~-~~~~d~vi~lGGDGT~L~aa~~~~-----~~~~Pilgin~----------G~lGFl~~~~~~~~~~~l~~i 116 (292)
T PRK03378 59 E----I-GQQADLAIVVGGDGNMLGAARVLA-----RYDIKVIGINR----------GNLGFLTDLDPDNALQQLSDV 116 (292)
T ss_pred h----c-CCCCCEEEEECCcHHHHHHHHHhc-----CCCCeEEEEEC----------CCCCcccccCHHHHHHHHHHH
Confidence 1 1 126899999999999966655432 24689999952 4689999865 344555554
No 53
>PRK13054 lipid kinase; Reviewed
Probab=88.45 E-value=2.7 Score=43.24 Aligned_cols=89 Identities=17% Similarity=0.214 Sum_probs=56.3
Q ss_pred CccHHHHHHHHHHhCCcEEEEeCChhhHHHHH-HHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHH
Q 009559 250 APTVSEIVDSMEERGINMLFVLGGNGTHAGAN-AIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAIN 328 (532)
Q Consensus 250 ~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~-~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~ 328 (532)
..+..++++...+.+.+.++++|||||+..+. .|.+. ..+.++++.-||.==-||+. +++|-..-.+.+.++|.
T Consensus 42 ~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~~--~~~~~~~lgiiP~GTgNdfa---r~lgi~~~~~~a~~~i~ 116 (300)
T PRK13054 42 KGDAARYVEEALALGVATVIAGGGDGTINEVATALAQL--EGDARPALGILPLGTANDFA---TAAGIPLEPDKALKLAI 116 (300)
T ss_pred CCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHHHHhh--ccCCCCcEEEEeCCcHhHHH---HhcCCCCCHHHHHHHHH
Confidence 34566777766678899999999999997653 33221 01335778889988889986 45666544455544443
Q ss_pred HHHHhhhhccccEEEEEecCC
Q 009559 329 SAYIEAHSAYHGIGIVKLMGR 349 (532)
Q Consensus 329 ~a~~eA~S~~~~V~vVevMGR 349 (532)
+ ...+.|-+.++=+|
T Consensus 117 ~------g~~~~iDlg~v~~~ 131 (300)
T PRK13054 117 E------GRAQPIDLARVNDR 131 (300)
T ss_pred h------CCceEEEEEEEcCc
Confidence 2 12234555566555
No 54
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.19 E-value=0.83 Score=47.19 Aligned_cols=52 Identities=19% Similarity=0.530 Sum_probs=36.9
Q ss_pred CCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHH--HHHHHHHHH
Q 009559 264 GINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVE--EAQRAINSA 330 (532)
Q Consensus 264 gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~--~a~~aI~~a 330 (532)
+.|.+++||||||+-.|..... ..+++|+||-. -++||-|.++ .+.+.+.++
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~-----~~~~PilgIn~----------G~lGFL~~~~~~~~~~~l~~~ 95 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLA-----KYDIPLIGINR----------GNLGFLTDIDPKNAYEQLEAC 95 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEeC----------CCCcccccCCHHHHHHHHHHH
Confidence 6899999999999976655432 24689999942 4699988754 344555544
No 55
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=87.79 E-value=0.79 Score=51.14 Aligned_cols=53 Identities=23% Similarity=0.376 Sum_probs=39.3
Q ss_pred CCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHH--HHHHHHHHHHH
Q 009559 264 GINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAV--EEAQRAINSAY 331 (532)
Q Consensus 264 gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv--~~a~~aI~~a~ 331 (532)
++|.+++||||||+-.|..... ...++|+||. --++||-|.+ +.+.++++.+.
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~-----~~~iPILGIN----------~G~LGFLt~i~~~e~~~~Le~il 316 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFK-----GPVPPVVPFS----------MGSLGFMTPFHSEQYRDCLDAIL 316 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEe----------CCCcceecccCHHHHHHHHHHHH
Confidence 6899999999999977666543 2468999993 2479999875 44556666653
No 56
>PRK13337 putative lipid kinase; Reviewed
Probab=87.71 E-value=2.6 Score=43.51 Aligned_cols=88 Identities=18% Similarity=0.233 Sum_probs=56.9
Q ss_pred CccHHHHHHHHHHhCCcEEEEeCChhhHHHHHH-HHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHH
Q 009559 250 APTVSEIVDSMEERGINMLFVLGGNGTHAGANA-IHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAIN 328 (532)
Q Consensus 250 ~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~-L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~ 328 (532)
..+.+++++.+.+.+.+.|+++|||||...+.. |.+ .+.++++.-||.===||.. +++|...-.+.+.+++.
T Consensus 43 ~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~gl~~----~~~~~~lgiiP~GT~NdfA---r~lgi~~~~~~a~~~i~ 115 (304)
T PRK13337 43 PGDATLAAERAVERKFDLVIAAGGDGTLNEVVNGIAE----KENRPKLGIIPVGTTNDFA---RALHVPRDIEKAADVII 115 (304)
T ss_pred CCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHhh----CCCCCcEEEECCcCHhHHH---HHcCCCCCHHHHHHHHH
Confidence 456677777777788999999999999977653 332 2335677778988888886 45666554555444443
Q ss_pred HHHHhhhhccccEEEEEecCCC
Q 009559 329 SAYIEAHSAYHGIGIVKLMGRS 350 (532)
Q Consensus 329 ~a~~eA~S~~~~V~vVevMGR~ 350 (532)
. +..+.+-+.++-+|.
T Consensus 116 ~------g~~~~vDlg~vn~~~ 131 (304)
T PRK13337 116 E------GHTVPVDIGKANNRY 131 (304)
T ss_pred c------CCeEEEEEEEECCEE
Confidence 2 112345555665554
No 57
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=87.34 E-value=33 Score=34.17 Aligned_cols=86 Identities=9% Similarity=0.120 Sum_probs=53.7
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHH
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSE 255 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ 255 (532)
.|||+...-.-|-...++.++...+..+|+. +.-+ .+........+
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~---------------------------------~~~~~~~~~~~ 46 (288)
T cd01538 1 KIGLSLPTKTEERWIRDRPNFEAALKELGAE-VIVQ---------------------------------NANGDPAKQIS 46 (288)
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHHHHHcCCE-EEEE---------------------------------CCCCCHHHHHH
Confidence 3677776666778888888888888888873 3210 01011112346
Q ss_pred HHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 256 IVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 256 ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
+++.+.+.++|++++.+.+.+.. ..+.+++++. +++||.+
T Consensus 47 ~i~~~~~~~vdgiii~~~~~~~~--~~~l~~l~~~--~ipvV~~ 86 (288)
T cd01538 47 QIENMIAKGVDVLVIAPVDGEAL--ASAVEKAADA--GIPVIAY 86 (288)
T ss_pred HHHHHHHcCCCEEEEecCChhhH--HHHHHHHHHC--CCCEEEE
Confidence 77778889999999998766431 2233445444 4677754
No 58
>PRK11914 diacylglycerol kinase; Reviewed
Probab=87.29 E-value=1.6 Score=44.87 Aligned_cols=70 Identities=24% Similarity=0.354 Sum_probs=51.7
Q ss_pred ccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhh-HHHHHHHHHH
Q 009559 251 PTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDT-AVEEAQRAIN 328 (532)
Q Consensus 251 ~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdT-Av~~a~~aI~ 328 (532)
.+.+++++.+.+.+.|.++++|||||...+. +.+. +.++++.-||.==-||+. +++|..+ -.+.+.+++.
T Consensus 51 ~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv---~~l~--~~~~~lgiiP~GT~NdfA---r~lg~~~~~~~~a~~~i~ 121 (306)
T PRK11914 51 HDARHLVAAALAKGTDALVVVGGDGVISNAL---QVLA--GTDIPLGIIPAGTGNDHA---REFGIPTGDPEAAADVIV 121 (306)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCchHHHHHh---HHhc--cCCCcEEEEeCCCcchhH---HHcCCCCCCHHHHHHHHH
Confidence 3566777777778899999999999997654 2222 235778889998899998 6888876 4666666554
No 59
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.45 E-value=1.1 Score=46.69 Aligned_cols=113 Identities=19% Similarity=0.273 Sum_probs=69.0
Q ss_pred CCCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc
Q 009559 172 PEEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP 251 (532)
Q Consensus 172 p~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~ 251 (532)
|+..+|+|+.-- ..|....+++.+...|..+|++ ++-... +.+.. ++... .. .
T Consensus 2 ~~~~~v~iv~~~-~k~~a~e~~~~i~~~L~~~gie-v~v~~~---------------~~~~~------~~~~~--~~--~ 54 (295)
T PRK01231 2 PSFRNIGLIGRL-GSSSVVETLRRLKDFLLDRGLE-VILDEE---------------TAEVL------PGHGL--QT--V 54 (295)
T ss_pred CCCCEEEEEecC-CCHHHHHHHHHHHHHHHHCCCE-EEEecc---------------hhhhc------Ccccc--cc--c
Confidence 344579998543 3488888899999888888883 432110 00000 11100 00 0
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHH--HHHHHHHHH
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAV--EEAQRAINS 329 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv--~~a~~aI~~ 329 (532)
.. +.+ ..+.|.++++|||||+-.+..... ..+++|+||.. -++||-|++ +...++++.
T Consensus 55 ~~----~~~-~~~~d~vi~~GGDGt~l~~~~~~~-----~~~~Pvlgin~----------G~lGFl~~~~~~~~~~~l~~ 114 (295)
T PRK01231 55 SR----KLL-GEVCDLVIVVGGDGSLLGAARALA-----RHNVPVLGINR----------GRLGFLTDIRPDELEFKLAE 114 (295)
T ss_pred ch----hhc-ccCCCEEEEEeCcHHHHHHHHHhc-----CCCCCEEEEeC----------CcccccccCCHHHHHHHHHH
Confidence 00 111 136899999999999977654432 35789999975 369999974 456677777
Q ss_pred HH
Q 009559 330 AY 331 (532)
Q Consensus 330 a~ 331 (532)
+.
T Consensus 115 ~~ 116 (295)
T PRK01231 115 VL 116 (295)
T ss_pred HH
Confidence 64
No 60
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=85.64 E-value=38 Score=33.22 Aligned_cols=82 Identities=9% Similarity=-0.119 Sum_probs=47.8
Q ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHH
Q 009559 177 AAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEI 256 (532)
Q Consensus 177 iaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~i 256 (532)
||++...-.-|-...++.++.+.+.++|+. ++- -++....+..+.
T Consensus 2 Igvi~p~~~~~~~~~~~~~i~~~~~~~gy~-~~~----------------------------------~~~~~~~~~~~~ 46 (269)
T cd06297 2 ISVLLPVVATEFYRRLLEGIEGALLEQRYD-LAL----------------------------------FPLLSLARLKRY 46 (269)
T ss_pred EEEEeCCCcChhHHHHHHHHHHHHHHCCCE-EEE----------------------------------EeCCCcHHHHHH
Confidence 566665444567778888888888777763 321 011111122344
Q ss_pred H-HHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 257 V-DSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 257 v-d~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
+ +.+..+++|++++.+.+-... ..+++++.+ ++||.+
T Consensus 47 ~~~~l~~~~vdgvi~~~~~~~~~----~~~~l~~~~--iPvv~~ 84 (269)
T cd06297 47 LESTTLAYLTDGLLLASYDLTER----LAERRLPTE--RPVVLV 84 (269)
T ss_pred HHHHHHhcCCCEEEEecCccChH----HHHHHhhcC--CCEEEE
Confidence 4 358889999999998764322 223444444 555544
No 61
>PRK13055 putative lipid kinase; Reviewed
Probab=85.42 E-value=2.5 Score=44.44 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=49.5
Q ss_pred cccCCccHHHHHHHHHHhCCcEEEEeCChhhHHHHH-HHHHHHHhcCCCceEeeeecccccCCCCCCccCChhh-HHHHH
Q 009559 246 VSRGAPTVSEIVDSMEERGINMLFVLGGNGTHAGAN-AIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDT-AVEEA 323 (532)
Q Consensus 246 TSR~~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~-~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdT-Av~~a 323 (532)
|.....+.+++++.+.+.+.+.|+++|||||+..+. .|.+ .+..+++--||.==-||+. +++|..+ -...+
T Consensus 41 t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl~evvngl~~----~~~~~~LgiiP~GTgNdfA---r~Lgi~~~~~~~a 113 (334)
T PRK13055 41 TTPEPNSAKNEAKRAAEAGFDLIIAAGGDGTINEVVNGIAP----LEKRPKMAIIPAGTTNDYA---RALKIPRDNPVEA 113 (334)
T ss_pred eecCCccHHHHHHHHhhcCCCEEEEECCCCHHHHHHHHHhh----cCCCCcEEEECCCchhHHH---HHcCCCCcCHHHH
Confidence 433334556677666778899999999999987544 3332 2234667778988888886 5667665 34444
Q ss_pred HHHH
Q 009559 324 QRAI 327 (532)
Q Consensus 324 ~~aI 327 (532)
.+++
T Consensus 114 ~~~l 117 (334)
T PRK13055 114 AKVI 117 (334)
T ss_pred HHHH
Confidence 4444
No 62
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=84.38 E-value=41 Score=32.56 Aligned_cols=84 Identities=10% Similarity=0.064 Sum_probs=48.0
Q ss_pred EEEEeCCC-CcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc-cHH
Q 009559 177 AAIVTCGG-LCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP-TVS 254 (532)
Q Consensus 177 iaIvt~GG-~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~-~~~ 254 (532)
||+|.--- ..|-...++.++...+.++|+. +.- -.++..+ ...
T Consensus 2 i~vi~p~~~~~~~~~~~~~g~~~~~~~~g~~-~~~----------------------------------~~~~~~~~~~~ 46 (275)
T cd06317 2 IGYTQNNVGSHSYQTTYNKAFQAAAEEDGVE-VIV----------------------------------LDANGDVARQA 46 (275)
T ss_pred eEEEecccCCCHHHHHHHHHHHHHHHhcCCE-EEE----------------------------------EcCCcCHHHHH
Confidence 56665442 5678888888888887777652 211 0111111 223
Q ss_pred HHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 255 EIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
+.++.+...++|++++.+.+.+... ..| ++++++ +++||.+
T Consensus 47 ~~~~~l~~~~vdgiii~~~~~~~~~-~~l-~~~~~~--~iPvV~~ 87 (275)
T cd06317 47 AQVEDLIAQKVDGIILWPTDGQAYI-PGL-RKAKQA--GIPVVIT 87 (275)
T ss_pred HHHHHHHHcCCCEEEEecCCccccH-HHH-HHHHHC--CCcEEEe
Confidence 5667777889999999887643211 122 334444 4666633
No 63
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=84.36 E-value=2 Score=44.71 Aligned_cols=110 Identities=23% Similarity=0.353 Sum_probs=65.4
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHH
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVS 254 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~ 254 (532)
.+|+|+.-= ..|.....+..+.+.+..+|++ ++-...- . ..+.... +. ....
T Consensus 6 ~~v~iv~~~-~~~~~~e~~~~i~~~L~~~g~~-v~v~~~~---------------~---~~~~~~~---~~----~~~~- 57 (291)
T PRK02155 6 KTVALIGRY-QTPGIAEPLESLAAFLAKRGFE-VVFEADT---------------A---RNIGLTG---YP----ALTP- 57 (291)
T ss_pred CEEEEEecC-CCHHHHHHHHHHHHHHHHCCCE-EEEecch---------------h---hhcCccc---cc----ccCh-
Confidence 458887432 4478888888898888888874 4321100 0 0000000 00 0001
Q ss_pred HHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHH--HHHHHHHHHHH
Q 009559 255 EIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAV--EEAQRAINSAY 331 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv--~~a~~aI~~a~ 331 (532)
+.+ ..+.|.++++|||||+-.|..... +.+++++||- --++||-|.+ +.+.++++.+.
T Consensus 58 ---~~~-~~~~d~vi~~GGDGt~l~~~~~~~-----~~~~pilGIn----------~G~lGFL~~~~~~~~~~~l~~~~ 117 (291)
T PRK02155 58 ---EEI-GARADLAVVLGGDGTMLGIGRQLA-----PYGVPLIGIN----------HGRLGFITDIPLDDMQETLPPML 117 (291)
T ss_pred ---hHh-ccCCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEc----------CCCccccccCCHHHHHHHHHHHH
Confidence 111 126899999999999977665432 2478999995 2468999973 55667777663
No 64
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=83.70 E-value=43 Score=32.29 Aligned_cols=83 Identities=13% Similarity=0.104 Sum_probs=54.0
Q ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHH
Q 009559 177 AAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEI 256 (532)
Q Consensus 177 iaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~i 256 (532)
||+|...-.-|-.+.++.++.+.+.++|+ +++-+. +........++
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~-~~~~~~---------------------------------~~~~~~~~~~~ 47 (265)
T cd06299 2 IGVIVPDIRNPYFASLATAIQDAASAAGY-STIIGN---------------------------------SDENPETENRY 47 (265)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHHcCC-EEEEEe---------------------------------CCCCHHHHHHH
Confidence 67777666678888899999988888887 343210 00011123467
Q ss_pred HHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 257 VDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 257 vd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
++.+...++|++++.+.+.... . .+++++++ ++||.+
T Consensus 48 ~~~l~~~~vdgiIi~~~~~~~~---~-~~~l~~~~--ipvV~~ 84 (265)
T cd06299 48 LDNLLSQRVDGIIVVPHEQSAE---Q-LEDLLKRG--IPVVFV 84 (265)
T ss_pred HHHHHhcCCCEEEEcCCCCChH---H-HHHHHhCC--CCEEEE
Confidence 7888999999999998775532 2 24555544 666643
No 65
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.69 E-value=0.82 Score=47.21 Aligned_cols=43 Identities=26% Similarity=0.536 Sum_probs=33.0
Q ss_pred hCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHH
Q 009559 263 RGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVE 321 (532)
Q Consensus 263 ~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~ 321 (532)
.+.|.++++|||||+-.|..+. ..+++|+|||. -+.||-|.++
T Consensus 56 ~~~d~vi~iGGDGTlL~a~~~~------~~~~pi~gIn~----------G~lGFl~~~~ 98 (277)
T PRK03708 56 MDVDFIIAIGGDGTILRIEHKT------KKDIPILGINM----------GTLGFLTEVE 98 (277)
T ss_pred cCCCEEEEEeCcHHHHHHHHhc------CCCCeEEEEeC----------CCCCccccCC
Confidence 4789999999999997665533 23789999984 2568888765
No 66
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.52 E-value=1.4 Score=46.14 Aligned_cols=54 Identities=22% Similarity=0.307 Sum_probs=38.4
Q ss_pred CCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHH---HHHHHHHH
Q 009559 264 GINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEA---QRAINSAY 331 (532)
Q Consensus 264 gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a---~~aI~~a~ 331 (532)
+.|.++++|||||+-.+..... +.+++|+||.. .-++||-|..... .++++.+.
T Consensus 57 ~~d~vi~~GGDGT~l~~~~~~~-----~~~~pv~gin~---------~G~lGFL~~~~~~~~~~~~l~~i~ 113 (305)
T PRK02645 57 LIDLAIVLGGDGTVLAAARHLA-----PHDIPILSVNV---------GGHLGFLTHPRDLLQDESVWDRLQ 113 (305)
T ss_pred CcCEEEEECCcHHHHHHHHHhc-----cCCCCEEEEec---------CCcceEecCchhhcchHHHHHHHH
Confidence 6899999999999976554432 34688999854 3479999986432 46666653
No 67
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=83.37 E-value=11 Score=36.23 Aligned_cols=109 Identities=16% Similarity=0.217 Sum_probs=67.7
Q ss_pred CcEEEEEeCCCCcchHHHH----HHHHHHHHHHcC---CceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceec
Q 009559 174 EVKAAIVTCGGLCPGLNDV----IRHIVITLEIYG---VKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGV 246 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNav----Ir~iv~~l~~yg---v~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGT 246 (532)
..|+||+.-|=-.+- .. +..+...+..+| ++++||-..-+.+|.+ -++..|=... .
T Consensus 22 ~~riAvfID~~Nv~~--~~~~~d~~~i~~~ls~~G~i~~~R~Y~~a~a~~~l~~--------------~l~~~Gf~pv-~ 84 (160)
T TIGR00288 22 EKKIGLLVDGPNMLR--KEFNIDLDEIREILSEYGDIKIGKVLLNQYASDKLIE--------------AVVNQGFEPI-I 84 (160)
T ss_pred CCcEEEEEeCCccCh--hhhccCHHHHHHHHHhcCCeEEEEEEechhccHHHHH--------------HHHHCCceEE-E
Confidence 467888875544431 11 455566667788 5567775544444321 1111111111 1
Q ss_pred ccCCccHHHHHHHHHH---hCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecc
Q 009559 247 SRGAPTVSEIVDSMEE---RGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKT 302 (532)
Q Consensus 247 SR~~~~~~~ivd~L~~---~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKT 302 (532)
..+.-|+.-++|.++- ..+|.++++-||+-+.- |.+.++++|..+-++|+|+.
T Consensus 85 ~kG~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~---Lv~~lre~G~~V~v~g~~~~ 140 (160)
T TIGR00288 85 VAGDVDVRMAVEAMELIYNPNIDAVALVTRDADFLP---VINKAKENGKETIVIGAEPG 140 (160)
T ss_pred ecCcccHHHHHHHHHHhccCCCCEEEEEeccHhHHH---HHHHHHHCCCEEEEEeCCCC
Confidence 2335577778888776 69999999999998854 55667778888888887653
No 68
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=83.10 E-value=5.2 Score=41.07 Aligned_cols=76 Identities=18% Similarity=0.199 Sum_probs=49.3
Q ss_pred cccCCccHHHHHHHHHHhCCcEEEEeCChhhHHHHH-HHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHH
Q 009559 246 VSRGAPTVSEIVDSMEERGINMLFVLGGNGTHAGAN-AIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQ 324 (532)
Q Consensus 246 TSR~~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~-~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~ 324 (532)
+.+...+.+++++.+.+.+.+.++++|||||+..+. .|.+. ..+...++.-||.==-||+. +++|-..-.+.+.
T Consensus 34 ~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~--~~~~~~~lgiiP~GTgNdfA---r~l~ip~~~~~a~ 108 (293)
T TIGR03702 34 VTWEKGDAQRYVAEALALGVSTVIAGGGDGTLREVATALAQI--RDDAAPALGLLPLGTANDFA---TAAGIPLEPAKAL 108 (293)
T ss_pred EecCCCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhh--CCCCCCcEEEEcCCchhHHH---HhcCCCCCHHHHH
Confidence 444455677788777788899999999999987654 33221 11234568889988899985 3455543333443
Q ss_pred HH
Q 009559 325 RA 326 (532)
Q Consensus 325 ~a 326 (532)
++
T Consensus 109 ~~ 110 (293)
T TIGR03702 109 KL 110 (293)
T ss_pred HH
Confidence 33
No 69
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=83.01 E-value=12 Score=39.93 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcC--------------CCceEeeeeccc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRR--------------MKVAVVGVPKTI 303 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~--------------~~I~VIGIPKTI 303 (532)
.++++++.+++.++|.++-|||--.+..|..++-.....+ -.+++|.||-|-
T Consensus 71 ~v~~~~~~~~~~~~d~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 136 (374)
T cd08189 71 NVEAGLALYRENGCDAILAVGGGSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTA 136 (374)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCC
Confidence 3678899999999999999999999999988775433211 237899999985
No 70
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=82.97 E-value=1.8 Score=48.94 Aligned_cols=53 Identities=30% Similarity=0.456 Sum_probs=39.1
Q ss_pred CCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHH--HHHHHHHHHHH
Q 009559 264 GINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAV--EEAQRAINSAY 331 (532)
Q Consensus 264 gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv--~~a~~aI~~a~ 331 (532)
++|.+++||||||+-.|..... ..+++|+||-- -++||-|.+ +.+.++++++.
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGin~----------G~lGFL~~~~~~~~~~~l~~~~ 402 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVN-----GEEIPIICINM----------GTVGFLTEFSKEEIFKAIDSII 402 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEcC----------CCCCcCcccCHHHHHHHHHHHH
Confidence 5799999999999976655432 24789999943 479999985 45666666653
No 71
>PLN02727 NAD kinase
Probab=82.74 E-value=1.7 Score=51.60 Aligned_cols=122 Identities=16% Similarity=0.238 Sum_probs=70.0
Q ss_pred ccCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHHc-CCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecc
Q 009559 169 YFKPEEVKAAIVTCGGLCPGLNDVIRHIVITLEIY-GVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVS 247 (532)
Q Consensus 169 ~f~p~~~kiaIvt~GG~cPGlNavIr~iv~~l~~y-gv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTS 247 (532)
-+.....+|+||.=-++ -.-..+..++..|... |+ +|+- +.+. .+.+..+...+ .+.+-
T Consensus 673 ~W~~p~rtVgIV~K~~~--ea~~~~~eL~~~L~~~~gi-~V~V---------E~~~------a~~l~~~~~~~--~~~~~ 732 (986)
T PLN02727 673 MWKSTPKTVLLLKKLGQ--ELMEEAKEVASFLYHQEKM-NVLV---------EPDV------HDIFARIPGFG--FVQTF 732 (986)
T ss_pred ecCCCCCEEEEEcCCcH--HHHHHHHHHHHHHHhCCCe-EEEE---------ecch------HHHhhcccccc--cccee
Confidence 33444668999988776 4666777788887664 66 3532 2111 00010000000 01000
Q ss_pred cCCccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHH--HHHHH
Q 009559 248 RGAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAV--EEAQR 325 (532)
Q Consensus 248 R~~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv--~~a~~ 325 (532)
...+.+++ . .++|.+|+||||||+-.|..+.. +..++|+||-- -++||-|-+ +.+.+
T Consensus 733 -~~~~~~el----~-~~~DLVIvLGGDGTlLrAar~~~-----~~~iPILGINl----------GrLGFLTdi~~ee~~~ 791 (986)
T PLN02727 733 -YSQDTSDL----H-ERVDFVACLGGDGVILHASNLFR-----GAVPPVVSFNL----------GSLGFLTSHYFEDFRQ 791 (986)
T ss_pred -cccchhhc----c-cCCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEeC----------CCccccccCCHHHHHH
Confidence 00111121 1 26899999999999977766653 35689999942 379999975 45667
Q ss_pred HHHHHH
Q 009559 326 AINSAY 331 (532)
Q Consensus 326 aI~~a~ 331 (532)
+++.+.
T Consensus 792 ~L~~Il 797 (986)
T PLN02727 792 DLRQVI 797 (986)
T ss_pred HHHHHH
Confidence 777664
No 72
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=82.69 E-value=67 Score=33.71 Aligned_cols=181 Identities=10% Similarity=0.052 Sum_probs=94.9
Q ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc-
Q 009559 173 EEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP- 251 (532)
Q Consensus 173 ~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~- 251 (532)
...+|+++...-.-|=.+.+..++-+.+..+|++ +. + .+ .+....
T Consensus 22 ~~~~i~~v~k~~~~pf~~~~~~Gi~~aa~~~G~~-v~-~-~~-------------------------------~~~~d~~ 67 (336)
T PRK15408 22 AAERIAFIPKLVGVGFFTSGGNGAKEAGKELGVD-VT-Y-DG-------------------------------PTEPSVS 67 (336)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHHHHHHhCCE-EE-E-EC-------------------------------CCCCCHH
Confidence 4558999999888999999999999988888873 42 0 00 000011
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCC--CccCChhhHHHHHHHHHHH
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLM--DKTFGFDTAVEEAQRAINS 329 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~t--D~SfGFdTAv~~a~~aI~~ 329 (532)
.-.++++.+...++|++++..-|.+. -...| ++++++ +|+||. +|.|++.. ...+|.++.-..+..+.+.
T Consensus 68 ~q~~~i~~li~~~vdgIiv~~~d~~a-l~~~l-~~a~~~--gIpVV~----~d~~~~~~~~~~~V~~~~~~~~G~~~~~~ 139 (336)
T PRK15408 68 GQVQLINNFVNQGYNAIIVSAVSPDG-LCPAL-KRAMQR--GVKVLT----WDSDTKPECRSYYINQGTPEQLGSMLVEM 139 (336)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCHHH-HHHHH-HHHHHC--CCeEEE----eCCCCCCccceEEEecCCHHHHHHHHHHH
Confidence 11257788889999999998766432 11222 344444 477775 56665432 2334544332233332222
Q ss_pred HHHhhhhccccEEEEEe-cC--CCccHHH-HHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccCc
Q 009559 330 AYIEAHSAYHGIGIVKL-MG--RSSGYIA-MHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGS 396 (532)
Q Consensus 330 a~~eA~S~~~~V~vVev-MG--R~sG~LA-~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg~ 396 (532)
+.......+..|.++.- ++ .+..|.. +...++...+++.+++.. +.-.....-.+.++..++.+..
T Consensus 140 l~~~l~~g~gki~il~g~~~~~~~~~r~~g~~~~l~~~~p~~~vv~~~-~~~~d~~~a~~~~~~lL~~~pd 209 (336)
T PRK15408 140 AAKQVGKDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIVTTQ-FGYNDATKSLQTAEGILKAYPD 209 (336)
T ss_pred HHHhcCCCCCEEEEEECCCCCccHHHHHHHHHHHHHhhCCCCEEEeec-CCCCcHHHHHHHHHHHHHHCCC
Confidence 21111112334655532 21 1223332 222443333666666543 2222233444566777765543
No 73
>PRK13059 putative lipid kinase; Reviewed
Probab=82.55 E-value=4.5 Score=41.68 Aligned_cols=63 Identities=24% Similarity=0.351 Sum_probs=44.5
Q ss_pred HHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHH
Q 009559 260 MEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAIN 328 (532)
Q Consensus 260 L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~ 328 (532)
..+.+.+.|+++|||||...+. +.+...+.++++.-||.==-||+. +++|...-.+.+.+.|.
T Consensus 52 ~~~~~~d~vi~~GGDGTv~evv---~gl~~~~~~~~lgviP~GTgNdfA---r~lgi~~~~~~a~~~i~ 114 (295)
T PRK13059 52 DIDESYKYILIAGGDGTVDNVV---NAMKKLNIDLPIGILPVGTANDFA---KFLGMPTDIGEACEQIL 114 (295)
T ss_pred HhhcCCCEEEEECCccHHHHHH---HHHHhcCCCCcEEEECCCCHhHHH---HHhCCCCCHHHHHHHHH
Confidence 3357889999999999987643 333334456788889988889986 56776665666665554
No 74
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=81.44 E-value=64 Score=33.83 Aligned_cols=173 Identities=16% Similarity=0.195 Sum_probs=92.2
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC-ccHH
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA-PTVS 254 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~-~~~~ 254 (532)
.||++.---.-|=...+++++-..+..+|+. + +|..+... ..-+
T Consensus 60 ~Ig~i~p~~~~~~~~~i~~gi~~~~~~~gy~-~----------------------------------~l~~~~~~~~~e~ 104 (333)
T COG1609 60 TIGLVVPDITNPFFAEILKGIEEAAREAGYS-L----------------------------------LLANTDDDPEKER 104 (333)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHHHHcCCE-E----------------------------------EEECCCCCHHHHH
Confidence 4666655444467777777777777777763 3 23333332 2456
Q ss_pred HHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccc-cCCCCCCccCChh--hHHHHHHHHHHHHH
Q 009559 255 EIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTID-NDILLMDKTFGFD--TAVEEAQRAINSAY 331 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTID-NDI~~tD~SfGFd--TAv~~a~~aI~~a~ 331 (532)
++++.|...++|++++.|-...-. +.+.+.+.+ +++|.|=.+.+ .+++ |+++| -+...+++.+-.
T Consensus 105 ~~~~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~~--~P~V~i~~~~~~~~~~----~V~~Dn~~~~~~a~~~L~~-- 172 (333)
T COG1609 105 EYLETLLQKRVDGLILLGERPNDS----LLELLAAAG--IPVVVIDRSPPGLGVP----SVGIDNFAGAYLATEHLIE-- 172 (333)
T ss_pred HHHHHHHHcCCCEEEEecCCCCHH----HHHHHHhcC--CCEEEEeCCCccCCCC----EEEEChHHHHHHHHHHHHH--
Confidence 788999999999999999222222 223333444 55555544333 3332 23333 233333333222
Q ss_pred HhhhhccccEEEEEe-------cCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhcc---CceEEEe
Q 009559 332 IEAHSAYHGIGIVKL-------MGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETK---GSAVVCV 401 (532)
Q Consensus 332 ~eA~S~~~~V~vVev-------MGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~k---g~~VVVV 401 (532)
.. +++|+++-- .-|..||+.+.....-. .+-.++.+..|+.+ .-.+.+++.+... --+|++.
T Consensus 173 ---~G-~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~~-~~~~~i~~~~~~~~---~g~~~~~~ll~~~~~~ptAif~~ 244 (333)
T COG1609 173 ---LG-HRRIAFIGGPLDSSASRERLEGYRAALREAGLP-INPEWIVEGDFSEE---SGYEAAERLLARGEPRPTAIFCA 244 (333)
T ss_pred ---CC-CceEEEEeCCCccccHhHHHHHHHHHHHHCCCC-CCcceEEecCCChH---HHHHHHHHHHhcCCCCCcEEEEc
Confidence 12 566766632 33445777655443321 11356667677554 4556666666533 3466665
Q ss_pred ec
Q 009559 402 AE 403 (532)
Q Consensus 402 AE 403 (532)
+.
T Consensus 245 nD 246 (333)
T COG1609 245 ND 246 (333)
T ss_pred Cc
Confidence 54
No 75
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=81.13 E-value=55 Score=31.71 Aligned_cols=126 Identities=13% Similarity=0.096 Sum_probs=67.2
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHH
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSE 255 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ 255 (532)
+||++...-.-|=...++.++-..+..+|+. +.-+. +........+
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~-~~~~~---------------------------------~~~~~~~~~~ 46 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGD-LRVYD---------------------------------AGGDDAKQAD 46 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHcCCE-EEEEC---------------------------------CCCCHHHHHH
Confidence 4777776666677788888888888888873 32110 0001111235
Q ss_pred HHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCC-CccCChhhHHHHHHHHHHHHHHhh
Q 009559 256 IVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLM-DKTFGFDTAVEEAQRAINSAYIEA 334 (532)
Q Consensus 256 ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~t-D~SfGFdTAv~~a~~aI~~a~~eA 334 (532)
.++.+-..++|++++..++.+.. ..+.+++.+++ ++||.+ |++.+.. -.+++.|- .+.+..+.+.+....
T Consensus 47 ~l~~~~~~~vdgii~~~~~~~~~--~~~i~~~~~~~--ipvV~~----~~~~~~~~~~~V~~d~-~~~g~~~~~~l~~~~ 117 (273)
T cd06305 47 QIDQAIAQKVDAIIIQHGRAEVL--KPWVKRALDAG--IPVVAF----DVDSDNPKVNNTTQDD-YSLARLSLDQLVKDL 117 (273)
T ss_pred HHHHHHHcCCCEEEEecCChhhh--HHHHHHHHHcC--CCEEEe----cCCCCCCccceeeech-HHHHHHHHHHHHHHh
Confidence 66667778999999998765321 12223444444 566655 4333211 12455432 123333334333332
Q ss_pred hhccccEEEEE
Q 009559 335 HSAYHGIGIVK 345 (532)
Q Consensus 335 ~S~~~~V~vVe 345 (532)
.. +.+|+++-
T Consensus 118 ~g-~~~i~~i~ 127 (273)
T cd06305 118 GG-KGNVGYVN 127 (273)
T ss_pred CC-CCCEEEEE
Confidence 23 45677774
No 76
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=80.84 E-value=14 Score=39.63 Aligned_cols=105 Identities=12% Similarity=0.193 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCc--ceecccCCc---cHHHHHHHHHHhCCc
Q 009559 192 VIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGS--LLGVSRGAP---TVSEIVDSMEERGIN 266 (532)
Q Consensus 192 vIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGS--iLGTSR~~~---~~~~ivd~L~~~gId 266 (532)
++..+-..+..+|.++++-+.++ ++....+ -.+..+.+...|=. +..--+..+ .++++++.+++.+.|
T Consensus 18 ~~~~l~~~~~~~g~~~~livt~~--~~~~~g~-----~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D 90 (383)
T PRK09860 18 SLTDAMNMMADYGFTRTLIVTDN--MLTKLGM-----AGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCD 90 (383)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCc--chhhCcc-----HHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCC
Confidence 56666666777887777765542 3332221 12233333332211 121112233 467899999999999
Q ss_pred EEEEeCChhhHHHHHHHHHHHHh-------------cCCCceEeeeeccc
Q 009559 267 MLFVLGGNGTHAGANAIHNECRK-------------RRMKVAVVGVPKTI 303 (532)
Q Consensus 267 ~L~vIGGdGT~~gA~~L~ee~~k-------------r~~~I~VIGIPKTI 303 (532)
.++-|||--++..|..++-.... ....+++|.||-|=
T Consensus 91 ~IiaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTa 140 (383)
T PRK09860 91 SVISLGGGSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTA 140 (383)
T ss_pred EEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCC
Confidence 99999999999999888742111 12357899999875
No 77
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.81 E-value=2.8 Score=43.33 Aligned_cols=51 Identities=24% Similarity=0.394 Sum_probs=36.3
Q ss_pred CCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHH--HHHHHHHHHHHH
Q 009559 264 GINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAV--EEAQRAINSAYI 332 (532)
Q Consensus 264 gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv--~~a~~aI~~a~~ 332 (532)
+.|.+++||||||+-.|.+. +..+|+||-- -++||-|.+ +...++++.+..
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~--------~~~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~ 104 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQR--------AKGPILGINM----------GGLGFLTEIEIDEVGSAIKKLIR 104 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHH--------cCCCEEEEEC----------CCCccCcccCHHHHHHHHHHHHc
Confidence 78999999999999655432 2358999832 468998874 455666666543
No 78
>PRK00861 putative lipid kinase; Reviewed
Probab=80.80 E-value=3.3 Score=42.55 Aligned_cols=73 Identities=21% Similarity=0.343 Sum_probs=51.4
Q ss_pred cCCccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHH
Q 009559 248 RGAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAI 327 (532)
Q Consensus 248 R~~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI 327 (532)
+...+..++++...+.+.|.|+++|||||+..+. +.+.. .++++.-||-===||.. +++|...-.+.+.+.|
T Consensus 41 ~~~~~a~~~a~~~~~~~~d~vv~~GGDGTl~evv---~~l~~--~~~~lgviP~GTgNdfA---r~lgi~~~~~~a~~~i 112 (300)
T PRK00861 41 TPEIGADQLAQEAIERGAELIIASGGDGTLSAVA---GALIG--TDIPLGIIPRGTANAFA---AALGIPDTIEEACRTI 112 (300)
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEECChHHHHHHH---HHHhc--CCCcEEEEcCCchhHHH---HHcCCCCCHHHHHHHH
Confidence 3345667788777788999999999999987654 22222 24677788988788885 5777776555555554
Q ss_pred H
Q 009559 328 N 328 (532)
Q Consensus 328 ~ 328 (532)
.
T Consensus 113 ~ 113 (300)
T PRK00861 113 L 113 (300)
T ss_pred H
Confidence 3
No 79
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=80.39 E-value=14 Score=39.44 Aligned_cols=52 Identities=23% Similarity=0.367 Sum_probs=40.3
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhc---------------CCCceEeeeeccc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKR---------------RMKVAVVGVPKTI 303 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr---------------~~~I~VIGIPKTI 303 (532)
.++++++.+++.++|.++-|||--.+..|..++-..... ...+++|.||-|-
T Consensus 74 ~v~~~~~~~~~~~~D~IiaiGGGSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTa 140 (379)
T TIGR02638 74 VVKAGVAAFKASGADYLIAIGGGSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTTA 140 (379)
T ss_pred HHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCCC
Confidence 457789999999999999999999999998776422211 1247899999883
No 80
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=80.06 E-value=3.4 Score=42.65 Aligned_cols=53 Identities=30% Similarity=0.545 Sum_probs=39.1
Q ss_pred hCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHH--HHHHHHHHH
Q 009559 263 RGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVE--EAQRAINSA 330 (532)
Q Consensus 263 ~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~--~a~~aI~~a 330 (532)
...+.++++|||||+-.|.+... ...++|+|| ---++||-|-.+ ...++++.+
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~-----~~~~pilgi----------n~G~lGFLt~~~~~~~~~~~~~~ 108 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLA-----RLDIPVLGI----------NLGHLGFLTDFEPDELEKALDAL 108 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhc-----cCCCCEEEE----------eCCCcccccccCHHHHHHHHHHH
Confidence 68999999999999988877653 245899999 233899999886 334444443
No 81
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=79.78 E-value=71 Score=32.15 Aligned_cols=68 Identities=9% Similarity=0.139 Sum_probs=46.4
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHH
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVS 254 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~ 254 (532)
..||++...-.-|-.+.++.++-..+.++|+. ++-.. +........
T Consensus 57 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~-~~~~~---------------------------------~~~~~~~~~ 102 (327)
T PRK10423 57 RTIGMLITASTNPFYSELVRGVERSCFERGYS-LVLCN---------------------------------TEGDEQRMN 102 (327)
T ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHcCCE-EEEEe---------------------------------CCCCHHHHH
Confidence 46888886666788889999999988888873 32100 000011224
Q ss_pred HHHHHHHHhCCcEEEEeCChhh
Q 009559 255 EIVDSMEERGINMLFVLGGNGT 276 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdGT 276 (532)
++++.|...++|++++.+.+.+
T Consensus 103 ~~~~~l~~~~vdGiI~~~~~~~ 124 (327)
T PRK10423 103 RNLETLMQKRVDGLLLLCTETH 124 (327)
T ss_pred HHHHHHHHcCCCEEEEeCCCcc
Confidence 6677788899999999987654
No 82
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=79.55 E-value=16 Score=39.07 Aligned_cols=105 Identities=18% Similarity=0.285 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCc--ceecccCCc---cHHHHHHHHHHhCCc
Q 009559 192 VIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGS--LLGVSRGAP---TVSEIVDSMEERGIN 266 (532)
Q Consensus 192 vIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGS--iLGTSR~~~---~~~~ivd~L~~~gId 266 (532)
++..+-..+..+|.++++-+.+. ++.+.. +-.+..+.+...|-. +..--...+ ..+++++.+++.++|
T Consensus 17 ~l~~l~~~~~~~g~~~~lvvtd~--~~~~~g-----~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D 89 (382)
T PRK10624 17 AIGALTDEVKRRGFKKALIVTDK--TLVKCG-----VVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGAD 89 (382)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCc--chhhCc-----chHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCC
Confidence 35556666666777677766553 333321 122223333333321 111111122 457788999999999
Q ss_pred EEEEeCChhhHHHHHHHHHHHHh---------------cCCCceEeeeeccc
Q 009559 267 MLFVLGGNGTHAGANAIHNECRK---------------RRMKVAVVGVPKTI 303 (532)
Q Consensus 267 ~L~vIGGdGT~~gA~~L~ee~~k---------------r~~~I~VIGIPKTI 303 (532)
.++-|||--++..|..++-.... ....+++|.||-|-
T Consensus 90 ~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTa 141 (382)
T PRK10624 90 YLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTA 141 (382)
T ss_pred EEEEeCChHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCC
Confidence 99999999999998766532211 01247899999884
No 83
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=79.15 E-value=19 Score=38.41 Aligned_cols=52 Identities=25% Similarity=0.390 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHh-------------cCCCceEeeeeccc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRK-------------RRMKVAVVGVPKTI 303 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~k-------------r~~~I~VIGIPKTI 303 (532)
.++++++.+++.++|.++-|||--.+..|..++-.... ....+++|.||-|-
T Consensus 68 ~v~~~~~~~~~~~~D~IIaiGGGS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTta 132 (375)
T cd08194 68 SVEEGVKLAKEGGCDVIIALGGGSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTTA 132 (375)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCCC
Confidence 46788999999999999999999999998887621110 12357899999873
No 84
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=78.97 E-value=2.2 Score=38.30 Aligned_cols=65 Identities=18% Similarity=0.291 Sum_probs=39.4
Q ss_pred cHHHHHHHHHHhCC-cEEEEeCChhhHHHHHHHHHHHHhcCC--CceEeeeecccccCCCCCCccCChhhHHHH
Q 009559 252 TVSEIVDSMEERGI-NMLFVLGGNGTHAGANAIHNECRKRRM--KVAVVGVPKTIDNDILLMDKTFGFDTAVEE 322 (532)
Q Consensus 252 ~~~~ivd~L~~~gI-d~L~vIGGdGT~~gA~~L~ee~~kr~~--~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~ 322 (532)
..+.+....+..+- +.++++|||||+..+. +.+.+... ++++.-||.==-||+. +++|+.+-.+.
T Consensus 41 ~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv---~~l~~~~~~~~~~l~iiP~GT~N~~a---r~lg~~~~~~~ 108 (130)
T PF00781_consen 41 HAEALARILALDDYPDVIVVVGGDGTLNEVV---NGLMGSDREDKPPLGIIPAGTGNDFA---RSLGIPSDPEA 108 (130)
T ss_dssp HHHHHHHHHHHTTS-SEEEEEESHHHHHHHH---HHHCTSTSSS--EEEEEE-SSS-HHH---HHTT--SSHHH
T ss_pred hHHHHHHHHhhccCccEEEEEcCccHHHHHH---HHHhhcCCCccceEEEecCCChhHHH---HHcCCCCCcHH
Confidence 34445543333343 8999999999997653 33333333 5689999988888875 57888877766
No 85
>PRK13057 putative lipid kinase; Reviewed
Probab=78.87 E-value=5.4 Score=40.77 Aligned_cols=69 Identities=26% Similarity=0.438 Sum_probs=45.6
Q ss_pred ccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHH
Q 009559 251 PTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAIN 328 (532)
Q Consensus 251 ~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~ 328 (532)
.+..++++. ...+.|.++++|||||+..+. +.+.. .++++..||.===||+. +++|...-.+.+.+.|.
T Consensus 38 ~~a~~~~~~-~~~~~d~iiv~GGDGTv~~v~---~~l~~--~~~~lgiiP~GT~Ndfa---r~Lg~~~~~~~a~~~i~ 106 (287)
T PRK13057 38 DDLSEVIEA-YADGVDLVIVGGGDGTLNAAA---PALVE--TGLPLGILPLGTANDLA---RTLGIPLDLEAAARVIA 106 (287)
T ss_pred HHHHHHHHH-HHcCCCEEEEECchHHHHHHH---HHHhc--CCCcEEEECCCCccHHH---HHcCCCCCHHHHHHHHH
Confidence 345566655 356789999999999997654 22222 35788889988888885 45666544555554443
No 86
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=77.95 E-value=80 Score=31.71 Aligned_cols=86 Identities=16% Similarity=0.216 Sum_probs=52.9
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceeccc-CCccHH
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSR-GAPTVS 254 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR-~~~~~~ 254 (532)
+||+|...=.-|-...+++++-..+.++|+. +.-+ +.+. ......
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~~g~~-v~~~---------------------------------~~~~~d~~~~~ 46 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKELGVD-AIYV---------------------------------GPTTADAAGQV 46 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHHhCCe-EEEE---------------------------------CCCCCCHHHHH
Confidence 4777776556788889999999988888873 4211 0111 112234
Q ss_pred HHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 255 EIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
+.++.+...++|++++.+.+-+ ....+.+++++.+ ++||.+
T Consensus 47 ~~i~~~~~~~~DgiIi~~~~~~--~~~~~~~~~~~~~--iPvV~v 87 (298)
T cd06302 47 QIIEDLIAQGVDAIAVVPNDPD--ALEPVLKKAREAG--IKVVTH 87 (298)
T ss_pred HHHHHHHhcCCCEEEEecCCHH--HHHHHHHHHHHCC--CeEEEE
Confidence 5667777889999999976633 2223334444444 566655
No 87
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=77.60 E-value=71 Score=30.87 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
.+.++.|.+.++|++++++.+.+.... ++++++ +++||.+
T Consensus 45 ~~~~~~l~~~~vdgiii~~~~~~~~~~----~~l~~~--~iPvv~~ 84 (268)
T cd06273 45 YAQARKLLERGVDGLALIGLDHSPALL----DLLARR--GVPYVAT 84 (268)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHH----HHHHhC--CCCEEEE
Confidence 456777888899999999876543222 334333 4677765
No 88
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=77.52 E-value=23 Score=37.56 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=42.5
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhc-------------CCCceEeeeecccccC
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKR-------------RMKVAVVGVPKTIDND 306 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr-------------~~~I~VIGIPKTIDND 306 (532)
.++++++.+++.+.|.++-|||--.+..|..++-..... .-++++|.||-|--.+
T Consensus 68 ~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtg 135 (370)
T cd08551 68 NVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTG 135 (370)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcch
Confidence 467889999999999999999999999988887543111 1257899999986433
No 89
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=77.08 E-value=68 Score=30.81 Aligned_cols=83 Identities=13% Similarity=0.127 Sum_probs=52.1
Q ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHH
Q 009559 177 AAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEI 256 (532)
Q Consensus 177 iaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~i 256 (532)
|||+...-..|-.+..+.++-..+..+|++ +.- +-+.+......+.
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~~-~~~---------------------------------~~~~~~~~~~~~~ 47 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYENGYQ-MLL---------------------------------MNTNFSIEKEIEA 47 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHHCCCE-EEE---------------------------------EeCCCCHHHHHHH
Confidence 678887777888888888888888888873 311 0011111122356
Q ss_pred HHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 257 VDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 257 vd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
++.|...++|++++.+.+.+.. +.+.+++.+ ++||.+
T Consensus 48 i~~l~~~~~dgii~~~~~~~~~----~~~~~~~~~--ipvv~~ 84 (259)
T cd01542 48 LELLARQKVDGIILLATTITDE----HREAIKKLN--VPVVVV 84 (259)
T ss_pred HHHHHhcCCCEEEEeCCCCCHH----HHHHHhcCC--CCEEEE
Confidence 6778889999999998765422 223344444 555554
No 90
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=77.04 E-value=7.2 Score=43.41 Aligned_cols=114 Identities=16% Similarity=0.181 Sum_probs=67.4
Q ss_pred ceEEEEcccccccccCCceeecCCHHHHhhhhhcCC---cceecccCCccHHHHHHHHHHhCCcEEEEeCChhhHHHHH-
Q 009559 206 KNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGG---SLLGVSRGAPTVSEIVDSMEERGINMLFVLGGNGTHAGAN- 281 (532)
Q Consensus 206 ~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GG---SiLGTSR~~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~- 281 (532)
++++-|.|=..|=-... .+-++.+..+....| .+.-|.+ ..+..++++.+...+.|.++++|||||+.-+.
T Consensus 112 kr~lvIvNP~SGkg~a~----k~~~~~v~~~L~~~gi~~~v~~T~~-~ghA~~la~~~~~~~~D~VV~vGGDGTlnEVvN 186 (481)
T PLN02958 112 KRLLVFVNPFGGKKSAS----KIFFDVVKPLLEDADIQLTIQETKY-QLHAKEVVRTMDLSKYDGIVCVSGDGILVEVVN 186 (481)
T ss_pred cEEEEEEcCCCCCcchh----HHHHHHHHHHHHHcCCeEEEEeccC-ccHHHHHHHHhhhcCCCEEEEEcCCCHHHHHHH
Confidence 46777777766633221 111234554444444 2343444 34566777777778899999999999986533
Q ss_pred HHHHHH-HhcCCCceEeeeecccccCCCCCCccC----ChhhHHHHHHHHH
Q 009559 282 AIHNEC-RKRRMKVAVVGVPKTIDNDILLMDKTF----GFDTAVEEAQRAI 327 (532)
Q Consensus 282 ~L~ee~-~kr~~~I~VIGIPKTIDNDI~~tD~Sf----GFdTAv~~a~~aI 327 (532)
-|.+.- .+.+.++++--||.==-||+.- |+ |-..-...|++.|
T Consensus 187 GL~~~~~~~~~~~~pLGiIPaGTgNdfAr---sL~~~~gip~~~~~A~~~I 234 (481)
T PLN02958 187 GLLEREDWKTAIKLPIGMVPAGTGNGMAK---SLLDSVGEPCSATNAVLAI 234 (481)
T ss_pred HHhhCccccccccCceEEecCcCcchhhh---hhccccCCCcCHHHHHHHH
Confidence 332110 0114468899999999999963 44 5444444444444
No 91
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=76.28 E-value=5.4 Score=42.21 Aligned_cols=55 Identities=16% Similarity=0.332 Sum_probs=43.7
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhc--------------CCCceEeeeecccccC
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKR--------------RMKVAVVGVPKTIDND 306 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr--------------~~~I~VIGIPKTIDND 306 (532)
+++++++.+++.++|.++-|||--++..|..++-..... +-.+++|.||-|--+-
T Consensus 66 ~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtG 134 (366)
T PF00465_consen 66 DVDEAAEQARKFGADCIIAIGGGSVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGTG 134 (366)
T ss_dssp HHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSSS
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCcccc
Confidence 467899999999999999999999999999888655421 1127999999886543
No 92
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=76.26 E-value=27 Score=37.81 Aligned_cols=104 Identities=15% Similarity=0.274 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCc--ceecccCCc---cHHHHHHHHHHhCCc
Q 009559 192 VIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGS--LLGVSRGAP---TVSEIVDSMEERGIN 266 (532)
Q Consensus 192 vIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGS--iLGTSR~~~---~~~~ivd~L~~~gId 266 (532)
++..+-..+.++|.++++-+-+ .++.+.. +-.+..+.+...|=. +..--...+ .+++.++.+++.+.|
T Consensus 36 ~~~~l~~~~~~~g~~~~lvv~~--~~~~~~g-----~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D 108 (395)
T PRK15454 36 AVSSCGQQAQTRGLKHLFVMAD--SFLHQAG-----MTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCD 108 (395)
T ss_pred HHHHHHHHHHhcCCCEEEEEcC--cchhhCc-----cHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcC
Confidence 4455555556778766665543 2333322 112233333332211 121112223 367889999999999
Q ss_pred EEEEeCChhhHHHHHHHHHHHHhcC-------------CCceEeeeecc
Q 009559 267 MLFVLGGNGTHAGANAIHNECRKRR-------------MKVAVVGVPKT 302 (532)
Q Consensus 267 ~L~vIGGdGT~~gA~~L~ee~~kr~-------------~~I~VIGIPKT 302 (532)
.++-|||--++..|..++-.....+ -.+++|.||-|
T Consensus 109 ~IiavGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTt 157 (395)
T PRK15454 109 GVIAFGGGSVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTT 157 (395)
T ss_pred EEEEeCChHHHHHHHHHHHHHhCCCccHHHHhcccccCCCCCEEEECCC
Confidence 9999999999999988764322211 24689999977
No 93
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=75.27 E-value=29 Score=36.99 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=41.1
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHh-------------cCCCceEeeeeccc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRK-------------RRMKVAVVGVPKTI 303 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~k-------------r~~~I~VIGIPKTI 303 (532)
.++++++.+++.++|.++-|||--.+..|..++-.... ...++++|.||-|-
T Consensus 71 ~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTa 135 (376)
T cd08193 71 VVEAAVEAARAAGADGVIGFGGGSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTA 135 (376)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCC
Confidence 46788999999999999999999999998887643211 01357899999883
No 94
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=74.82 E-value=80 Score=30.10 Aligned_cols=86 Identities=10% Similarity=0.147 Sum_probs=51.7
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHH
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSE 255 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ 255 (532)
|||+|......|..+.+++++-..+...|++ +.- . + +........+
T Consensus 1 ~ig~i~p~~~~~~~~~~~~~~~~~a~~~g~~-~~~---------------~--~----------------~~~~~~~~~~ 46 (267)
T cd01536 1 KIGLVVPSLNNPFWQAMNKGAEAAAKELGVE-LIV---------------L--D----------------AQNDVSKQIQ 46 (267)
T ss_pred CEEEEeccccCHHHHHHHHHHHHHHHhcCce-EEE---------------E--C----------------CCCCHHHHHH
Confidence 5788887767888899999988888776652 211 0 0 0011112345
Q ss_pred HHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 256 IVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 256 ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
.++.|...+++++++.+.+.... ....+++++. ++++|.+
T Consensus 47 ~~~~l~~~~vdgvi~~~~~~~~~--~~~~~~l~~~--~ip~V~~ 86 (267)
T cd01536 47 QIEDLIAQGVDGIIISPVDSAAL--TPALKKANAA--GIPVVTV 86 (267)
T ss_pred HHHHHHHcCCCEEEEeCCCchhH--HHHHHHHHHC--CCcEEEe
Confidence 66777778999999988764321 1122334443 4666665
No 95
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=74.69 E-value=1e+02 Score=31.28 Aligned_cols=85 Identities=15% Similarity=0.132 Sum_probs=51.3
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHH
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVS 254 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~ 254 (532)
..||++...-.-|-...++.++-..+..+|+. ++-...+ . +++ ...
T Consensus 64 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~-~~~~~~~------~-------~~~--------------------~~~ 109 (331)
T PRK14987 64 RAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQ-TMLAHYG------Y-------KPE--------------------MEQ 109 (331)
T ss_pred CEEEEEeCCCcchhHHHHHHHHHHHHHHCCCE-EEEecCC------C-------CHH--------------------HHH
Confidence 46888886656678888889998888888873 4211100 0 000 113
Q ss_pred HHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 255 EIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
+.++.+...++|++++.+-+.+-. .+ +++.+. +++||.+
T Consensus 110 ~~~~~~~~~~vdgiI~~~~~~~~~---~~-~~l~~~--~iPvV~~ 148 (331)
T PRK14987 110 ERLESMLSWNIDGLILTERTHTPR---TL-KMIEVA--GIPVVEL 148 (331)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCHH---HH-HHHHhC--CCCEEEE
Confidence 456778889999999987543321 12 333333 5677754
No 96
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=74.53 E-value=3.2 Score=37.15 Aligned_cols=102 Identities=14% Similarity=0.254 Sum_probs=60.8
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHH
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSE 255 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ 255 (532)
|+.|+..|-. -..+++++.+.|++ .+.+. .+ -+......+..+.....|+.- ..+.-.+.++
T Consensus 4 kvLIanrGei-------a~r~~ra~r~~Gi~-tv~v~-------s~-~d~~s~~~~~ad~~~~~~~~~--~~~~yl~~e~ 65 (110)
T PF00289_consen 4 KVLIANRGEI-------AVRIIRALRELGIE-TVAVN-------SN-PDTVSTHVDMADEAYFEPPGP--SPESYLNIEA 65 (110)
T ss_dssp EEEESS-HHH-------HHHHHHHHHHTTSE-EEEEE-------EG-GGTTGHHHHHSSEEEEEESSS--GGGTTTSHHH
T ss_pred EEEEECCCHH-------HHHHHHHHHHhCCc-ceecc-------Cc-hhcccccccccccceecCcch--hhhhhccHHH
Confidence 5666555544 33466777889985 44332 11 111112223333333333111 1222347899
Q ss_pred HHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 256 IVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 256 ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
|++..++.+++. +.||.|-+.-...+++.|++.| +.++|-
T Consensus 66 I~~ia~~~g~~~--i~pGyg~lse~~~fa~~~~~~g--i~fiGp 105 (110)
T PF00289_consen 66 IIDIARKEGADA--IHPGYGFLSENAEFAEACEDAG--IIFIGP 105 (110)
T ss_dssp HHHHHHHTTESE--EESTSSTTTTHHHHHHHHHHTT---EESSS
T ss_pred HhhHhhhhcCcc--cccccchhHHHHHHHHHHHHCC--CEEECc
Confidence 999999997766 5599999999999999998766 567764
No 97
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=74.45 E-value=84 Score=30.19 Aligned_cols=83 Identities=18% Similarity=0.134 Sum_probs=54.1
Q ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHH
Q 009559 177 AAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEI 256 (532)
Q Consensus 177 iaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~i 256 (532)
||++..+-.-|....+++++-+.+..+|+. ++-+.. + ....+..++
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~-~~~~~~--------~-------------------------~~~~~~~~~ 47 (268)
T cd01575 2 VAVLVPSLSNSVFADVLQGISDVLEAAGYQ-LLLGNT--------G-------------------------YSPEREEEL 47 (268)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHHHcCCE-EEEecC--------C-------------------------CCchhHHHH
Confidence 678887777888999999998888888873 321110 0 011123467
Q ss_pred HHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 257 VDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 257 vd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
++.|...++|++++.+-+.+. . ..+.+.+. +++||.+
T Consensus 48 ~~~l~~~~vdgiii~~~~~~~-~---~~~~~~~~--~ipvv~~ 84 (268)
T cd01575 48 LRTLLSRRPAGLILTGLEHTE-R---TRQLLRAA--GIPVVEI 84 (268)
T ss_pred HHHHHHcCCCEEEEeCCCCCH-H---HHHHHHhc--CCCEEEE
Confidence 788888999999999987552 1 12233333 5677776
No 98
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=73.49 E-value=1.1e+02 Score=30.96 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=26.9
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
.+.++.+..++++++++.+.|... .....+++++.+ |+||.+
T Consensus 47 ~~~i~~l~~~~vdgiii~~~~~~~--~~~~~~~~~~~g--iPvV~~ 88 (303)
T cd01539 47 NEQIDTALAKGVDLLAVNLVDPTA--AQTVINKAKQKN--IPVIFF 88 (303)
T ss_pred HHHHHHHHHcCCCEEEEecCchhh--HHHHHHHHHHCC--CCEEEe
Confidence 467888899999999998877532 122224444444 566654
No 99
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=73.36 E-value=4.2 Score=42.85 Aligned_cols=64 Identities=23% Similarity=0.438 Sum_probs=47.3
Q ss_pred cHHHHHHHHHHhCC---cEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHH
Q 009559 252 TVSEIVDSMEERGI---NMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVE 321 (532)
Q Consensus 252 ~~~~ivd~L~~~gI---d~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~ 321 (532)
..+++++.+++.++ |.++.|||--++..|..++... .+ ++++|.||-|. +..+|.+.|--|+++
T Consensus 70 ~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~-~r--gip~i~VPTT~---~a~vds~~~~k~~i~ 136 (345)
T cd08195 70 TLEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFVAATY-MR--GIDFIQIPTTL---LAQVDSSVGGKTGVN 136 (345)
T ss_pred HHHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHHHHHH-hc--CCCeEEcchhH---HHHhhccCCCcceec
Confidence 46788999999999 9999999999999888777432 23 58999999997 233444555444443
No 100
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=73.19 E-value=1.2e+02 Score=31.78 Aligned_cols=161 Identities=15% Similarity=0.142 Sum_probs=95.6
Q ss_pred EEEeCCCCcchH-HHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCc-ceecccC-----C
Q 009559 178 AIVTCGGLCPGL-NDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGS-LLGVSRG-----A 250 (532)
Q Consensus 178 aIvt~GG~cPGl-NavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGS-iLGTSR~-----~ 250 (532)
-|+.+||+.==+ +.-+..++..+...+. +--++-|-+..+... ..+|++.++.+...|=. .+++--. .
T Consensus 139 ~VilSGGDPl~~~~~~L~~ll~~l~~i~~--v~~iri~Tr~~v~~p---~rit~ell~~L~~~g~~v~i~l~~~h~~el~ 213 (321)
T TIGR03822 139 EVILTGGDPLVLSPRRLGDIMARLAAIDH--VKIVRFHTRVPVADP---ARVTPALIAALKTSGKTVYVALHANHARELT 213 (321)
T ss_pred EEEEeCCCcccCCHHHHHHHHHHHHhCCC--ccEEEEeCCCcccCh---hhcCHHHHHHHHHcCCcEEEEecCCChhhcC
Confidence 377888886655 3578888888876663 223344445543322 22578888877776522 3443221 1
Q ss_pred ccHHHHHHHHHHhCCcEEE---Ee-CChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHH
Q 009559 251 PTVSEIVDSMEERGINMLF---VL-GGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRA 326 (532)
Q Consensus 251 ~~~~~ivd~L~~~gId~L~---vI-GGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~a 326 (532)
+...+.++.|++.||..+. ++ |=|++.....+|.+.+.+.|...-.+....- +++ +--|.+..+.+.+.
T Consensus 214 ~~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p----~~g---~~~f~~~~~~~~~i 286 (321)
T TIGR03822 214 AEARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLDL----APG---TAHFRVTIEEGQAL 286 (321)
T ss_pred HHHHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCC----CCC---cccccCcHHHHHHH
Confidence 2456788999999996643 34 5567677777777777766654333333211 122 23456777888888
Q ss_pred HHHHHHhhhhccccEEEEEecCCC
Q 009559 327 INSAYIEAHSAYHGIGIVKLMGRS 350 (532)
Q Consensus 327 I~~a~~eA~S~~~~V~vVevMGR~ 350 (532)
+..++....+.----+++++.|..
T Consensus 287 ~~~l~~~~~g~~~p~~v~~~~~~~ 310 (321)
T TIGR03822 287 VRALRGRISGLAQPTYVLDIPGGH 310 (321)
T ss_pred HHHHHHhCCCCcceeEEEeCCCCC
Confidence 887765443322224678887754
No 101
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=73.10 E-value=7.6 Score=40.67 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=41.4
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHh--cCCCceEeeeeccc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRK--RRMKVAVVGVPKTI 303 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~k--r~~~I~VIGIPKTI 303 (532)
..+++++.+++.+.|.++-|||--++..|..++-.... ..-.+++|.||-|-
T Consensus 66 ~v~~~~~~~~~~~~d~IiaiGGGs~~D~aKa~a~~~~~~~~~~~~p~i~VPTta 119 (332)
T cd08180 66 VVAKGIKKFLDFKPDIVIALGGGSAIDAAKAIIYFAKKLGKKKKPLFIAIPTTS 119 (332)
T ss_pred HHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHHhCCCCCCCCCEEEeCCCC
Confidence 45688999999999999999999999999877644332 12248999999984
No 102
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=72.90 E-value=91 Score=29.92 Aligned_cols=120 Identities=18% Similarity=0.162 Sum_probs=65.2
Q ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHH
Q 009559 177 AAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEI 256 (532)
Q Consensus 177 iaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~i 256 (532)
||++.-.-.-|-.+.++.++.+.+..+|+. +.-+. +........+.
T Consensus 2 igvi~~~~~~~~~~~~~~~i~~~a~~~g~~-~~~~~---------------------------------~~~~~~~~~~~ 47 (267)
T cd06283 2 IGVIVADITNPFSSLVLKGIEDVCRAHGYQ-VLVCN---------------------------------SDNDPEKEKEY 47 (267)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHcCCE-EEEEc---------------------------------CCCCHHHHHHH
Confidence 566665556788888888988888888763 32110 00000112356
Q ss_pred HHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCC-ccCChhhHHHHHHHHHHHHHHhhh
Q 009559 257 VDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMD-KTFGFDTAVEEAQRAINSAYIEAH 335 (532)
Q Consensus 257 vd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD-~SfGFdTAv~~a~~aI~~a~~eA~ 335 (532)
++.+...++|++++.+.+.... .+ +++++. +++||.+ |++++... .++|.|-- +.+..+.+.+...
T Consensus 48 ~~~l~~~~~dgiii~~~~~~~~---~l-~~~~~~--~ipvV~~----~~~~~~~~~~~v~~d~~-~~g~~~~~~l~~~-- 114 (267)
T cd06283 48 LESLLAYQVDGLIVNPTGNNKE---LY-QRLAKN--GKPVVLV----DRKIPELGVDTVTLDNY-EAAKEAVDHLIEK-- 114 (267)
T ss_pred HHHHHHcCcCEEEEeCCCCChH---HH-HHHhcC--CCCEEEE----cCCCCCCCCCEEEeccH-HHHHHHHHHHHHc--
Confidence 6778889999999998765432 23 334333 4677765 44443221 34554431 1222333333221
Q ss_pred hccccEEEE
Q 009559 336 SAYHGIGIV 344 (532)
Q Consensus 336 S~~~~V~vV 344 (532)
-+++|.++
T Consensus 115 -g~~~i~~l 122 (267)
T cd06283 115 -GYERILFV 122 (267)
T ss_pred -CCCcEEEE
Confidence 24567666
No 103
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=72.56 E-value=1e+02 Score=30.36 Aligned_cols=133 Identities=11% Similarity=0.136 Sum_probs=66.2
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCC----CCccCC--hhhHHHHHHHHH
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILL----MDKTFG--FDTAVEEAQRAI 327 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~----tD~SfG--FdTAv~~a~~aI 327 (532)
.+.++.+..+++|++++...+-.. ...+-+++.++ +|+||.+ |.+++. ...+++ +..|.+.+++.+
T Consensus 45 ~~~i~~~~~~~vdgiii~~~~~~~--~~~~i~~~~~~--~iPvV~~----~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l 116 (272)
T cd06313 45 VAAIENMASQGWDFIAVDPLGIGT--LTEAVQKAIAR--GIPVIDM----GTLIAPLQINVHSFLAPDNYFMGASVAQAL 116 (272)
T ss_pred HHHHHHHHHcCCCEEEEcCCChHH--hHHHHHHHHHC--CCcEEEe----CCCCCCCCCceEEEECCCcHHHHHHHHHHH
Confidence 467788889999999998764211 12222444444 4667665 333321 112223 334444444444
Q ss_pred HHHHHhhhhccccEEEEEe-------cCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccC--ceE
Q 009559 328 NSAYIEAHSAYHGIGIVKL-------MGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKG--SAV 398 (532)
Q Consensus 328 ~~a~~eA~S~~~~V~vVev-------MGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg--~~V 398 (532)
-+. ... +.+|.++.- .-|..||....... +...+.-+.+..++.+ .-.+.+++.++++. -++
T Consensus 117 ~~~---~~g-~~~i~~l~g~~~~~~~~~R~~gf~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~ai 187 (272)
T cd06313 117 CNA---MGG-KGKIAMLQGALGHTGAQGRAQGFNDVIKKY--PDIEVVDEQPANWDVS---KAARIWETWLTKYPQLDGA 187 (272)
T ss_pred HHH---cCC-CceEEEEECCCCCcchhHHHHHHHHHHHhC--CCCEEEeccCCCCCHH---HHHHHHHHHHHhCCCCCEE
Confidence 331 112 346777641 23677777665432 1233332333344433 44567777776543 345
Q ss_pred EEeec
Q 009559 399 VCVAE 403 (532)
Q Consensus 399 VVVAE 403 (532)
++.+.
T Consensus 188 ~~~nd 192 (272)
T cd06313 188 FCHND 192 (272)
T ss_pred EECCC
Confidence 44443
No 104
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=72.42 E-value=38 Score=36.22 Aligned_cols=52 Identities=21% Similarity=0.397 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHh-------------cCCCceEeeeeccc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRK-------------RRMKVAVVGVPKTI 303 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~k-------------r~~~I~VIGIPKTI 303 (532)
.++++++.+++.+.|.++-|||--.+..|..++-.... ...++++|.||-|-
T Consensus 73 ~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTta 137 (377)
T cd08176 73 NVKDGLAVFKKEGCDFIISIGGGSPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTA 137 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCC
Confidence 36788999999999999999999999999887632111 12357899999874
No 105
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=71.74 E-value=1e+02 Score=29.94 Aligned_cols=134 Identities=14% Similarity=0.114 Sum_probs=71.4
Q ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc-cHHH
Q 009559 177 AAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP-TVSE 255 (532)
Q Consensus 177 iaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~-~~~~ 255 (532)
|||+...=.-|=.+.++.++...+.++|+. +.-+ ++...+ .-.+
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~gy~-v~~~----------------------------------~~~~~~~~~~~ 46 (269)
T cd06293 2 IGLVVPDIANPFFAELADAVEEEADARGLS-LVLC----------------------------------ATRNRPERELT 46 (269)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHCCCE-EEEE----------------------------------eCCCCHHHHHH
Confidence 666665434566777888888888777763 3211 111111 2346
Q ss_pred HHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHHHHHhhh
Q 009559 256 IVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAH 335 (532)
Q Consensus 256 ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~a~~eA~ 335 (532)
+++.+...++|++++.+-+-... .+.+ +.+. +++||.+=.++++. ....-.+-+..|...+++.+-. .
T Consensus 47 ~i~~~~~~~~dgiii~~~~~~~~---~~~~-~~~~--~~pvV~i~~~~~~~-~~~~V~~d~~~~~~~~~~~L~~----~- 114 (269)
T cd06293 47 YLRWLDTNHVDGLIFVTNRPDDG---ALAK-LINS--YGNIVLVDEDVPGA-KVPKVFCDNEQGGRLATRHLAR----A- 114 (269)
T ss_pred HHHHHHHCCCCEEEEeCCCCCHH---HHHH-HHhc--CCCEEEECCCCCCC-CCCEEEECCHHHHHHHHHHHHH----C-
Confidence 78889999999999997432222 2222 2233 46677653333321 1111223344555555555433 1
Q ss_pred hccccEEEEEe-------cCCCccHHHHHH
Q 009559 336 SAYHGIGIVKL-------MGRSSGYIAMHA 358 (532)
Q Consensus 336 S~~~~V~vVev-------MGR~sG~LA~~a 358 (532)
. +.+|+++-- .-|..||..+..
T Consensus 115 G-~~~i~~i~~~~~~~~~~~R~~Gf~~a~~ 143 (269)
T cd06293 115 G-HRRIAFVGGPDALISARERYAGYREALA 143 (269)
T ss_pred C-CceEEEEecCcccccHHHHHHHHHHHHH
Confidence 2 456777631 235567766443
No 106
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=71.72 E-value=56 Score=33.91 Aligned_cols=95 Identities=20% Similarity=0.247 Sum_probs=62.8
Q ss_pred CCCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc
Q 009559 172 PEEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP 251 (532)
Q Consensus 172 p~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~ 251 (532)
++..+||+++.+-..|--+.+++++...+..+|+. ++-. . +.....
T Consensus 23 ~~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~-l~i~-~--------------------------------~~~~~~ 68 (330)
T PRK10355 23 AKEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAK-VFVQ-S--------------------------------ANGNEE 68 (330)
T ss_pred CCCceEEEEecCCCchHHHHHHHHHHHHHHHcCCE-EEEE-C--------------------------------CCCCHH
Confidence 36789999999999999999999999999888873 4210 0 001111
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTID 304 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTID 304 (532)
...+.++.|..+++|++++.+.+.+... ..+ +.+.++ +++||.+-..++
T Consensus 69 ~~~~~i~~l~~~~vDGiIi~~~~~~~~~-~~l-~~~~~~--~iPvV~id~~~~ 117 (330)
T PRK10355 69 TQMSQIENMINRGVDVLVIIPYNGQVLS-NVI-KEAKQE--GIKVLAYDRMIN 117 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCChhhHH-HHH-HHHHHC--CCeEEEECCCCC
Confidence 2346678888899999999986543111 122 334443 477887754443
No 107
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=71.68 E-value=12 Score=39.10 Aligned_cols=70 Identities=24% Similarity=0.337 Sum_probs=52.1
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHH-HHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhh-HHHHHHHHHHH
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAG-ANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDT-AVEEAQRAINS 329 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~g-A~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdT-Av~~a~~aI~~ 329 (532)
+..++++.+...+.|.+++.|||||... ++.|.+ +.... +--||.===||+. +++|... ....|.+.+..
T Consensus 46 ~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~----~~~~~-LgilP~GT~NdfA---r~Lgip~~~~~~Al~~i~~ 117 (301)
T COG1597 46 DAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAG----TDDPP-LGILPGGTANDFA---RALGIPLDDIEAALELIKS 117 (301)
T ss_pred cHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHhc----CCCCc-eEEecCCchHHHH---HHcCCCchhHHHHHHHHHc
Confidence 6778888888889999999999999863 455543 23222 6678887788885 5788888 47777777665
No 108
>PRK12361 hypothetical protein; Provisional
Probab=71.54 E-value=7.7 Score=43.53 Aligned_cols=70 Identities=19% Similarity=0.346 Sum_probs=47.4
Q ss_pred CccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccC-ChhhH---HHHHHH
Q 009559 250 APTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTF-GFDTA---VEEAQR 325 (532)
Q Consensus 250 ~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~Sf-GFdTA---v~~a~~ 325 (532)
..+..++++...+.+.+.++++|||||...+. +.+.. .++++--||.==-||+. +++ |..+. .+.+.+
T Consensus 283 ~~~a~~la~~~~~~~~d~Viv~GGDGTl~ev~---~~l~~--~~~~lgiiP~GTgNdfA---r~L~gi~~~~~~~~~a~~ 354 (547)
T PRK12361 283 EISAEALAKQARKAGADIVIACGGDGTVTEVA---SELVN--TDITLGIIPLGTANALS---HALFGLGSKLIPVEQACD 354 (547)
T ss_pred CccHHHHHHHHHhcCCCEEEEECCCcHHHHHH---HHHhc--CCCCEEEecCCchhHHH---HHhcCCCCCCccHHHHHH
Confidence 34567777777778899999999999997654 22222 34677888988888886 455 65532 444444
Q ss_pred HH
Q 009559 326 AI 327 (532)
Q Consensus 326 aI 327 (532)
+|
T Consensus 355 ~i 356 (547)
T PRK12361 355 NI 356 (547)
T ss_pred HH
Confidence 44
No 109
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=70.93 E-value=6.2 Score=41.88 Aligned_cols=63 Identities=27% Similarity=0.416 Sum_probs=46.6
Q ss_pred cHHHHHHHHHHhCC---cEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHH
Q 009559 252 TVSEIVDSMEERGI---NMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAV 320 (532)
Q Consensus 252 ~~~~ivd~L~~~gI---d~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv 320 (532)
..+++++.+++.++ |.++.|||--++..|..++-.. .+ ++++|.||-|. +..+|.+.|--+++
T Consensus 77 ~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~-~~--gip~i~IPTT~---~s~~ds~~~~k~~i 142 (358)
T PRK00002 77 TLEKIYDALLEAGLDRSDTLIALGGGVIGDLAGFAAATY-MR--GIRFIQVPTTL---LAQVDSSVGGKTGI 142 (358)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHHHHHh-cC--CCCEEEcCchh---hhccccCcCCceec
Confidence 45678888999887 9999999999999988777422 23 57899999997 33455555544444
No 110
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=70.79 E-value=38 Score=36.79 Aligned_cols=51 Identities=12% Similarity=0.236 Sum_probs=39.3
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHh--------------cC-----CCceEeeeecc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRK--------------RR-----MKVAVVGVPKT 302 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~k--------------r~-----~~I~VIGIPKT 302 (532)
.++++++.+++.++|.++-|||--.+..|..++-.... ++ -.+++|.||-|
T Consensus 68 ~v~~~~~~~~~~~~D~IIaiGGGSviD~AKaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 137 (414)
T cd08190 68 SFKDAIAFAKKGQFDAFVAVGGGSVIDTAKAANLYASHPDADFLDYVNAPIGKGKPPPGPLKPLIAIPTT 137 (414)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCCCHHHHHhhccccccccCCCCCCEEEeCCC
Confidence 46788999999999999999999999998777522110 11 22689999999
No 111
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=70.48 E-value=5 Score=44.77 Aligned_cols=133 Identities=15% Similarity=0.117 Sum_probs=82.3
Q ss_pred EEeCCCCcchHHHHHHHHHHHHHHc-----C--CceEEEEcccccccccCCceeecCCHHHHhhhhhc--CCcceecccC
Q 009559 179 IVTCGGLCPGLNDVIRHIVITLEIY-----G--VKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLS--GGSLLGVSRG 249 (532)
Q Consensus 179 Ivt~GG~cPGlNavIr~iv~~l~~y-----g--v~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~--GGSiLGTSR~ 249 (532)
++-..+..| ..++..++...... + -..|+-..++.... .. ..+-++.+.|..++.. .-..+--.-+
T Consensus 140 ~IDt~~~s~--~e~~~~iv~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~--~~~ii~d~~v~~ly~~~l~~~~~~~~~g 214 (488)
T PRK13951 140 GIDTSKLNE--WETTALVVLEALDEKEISTIEKPHLVKIILGGFKRV-RN--EELVFTTERVEKIYGRYLPENRLLFPDG 214 (488)
T ss_pred EEECCCCCH--HHHHHHHHHHhhhcceeeecCCceeEEEeccccccC-CC--eEEEEECCcHHHHHHHhhcccEEEecCC
Confidence 444455555 56666666554322 1 11344334444433 22 2233566666654432 0111111111
Q ss_pred C-----ccHHHHHHHHHHhCC---cEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHH
Q 009559 250 A-----PTVSEIVDSMEERGI---NMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVE 321 (532)
Q Consensus 250 ~-----~~~~~ivd~L~~~gI---d~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~ 321 (532)
. ...+++++.|.++++ +.++.|||--....|--++.... | +|+.|.||-|+ +..+|.|+|--||+|
T Consensus 215 e~~k~l~~v~~~~~~l~~~~~~R~d~viaiGGG~v~D~agf~A~~y~-R--Gi~~i~vPTTl---la~vDssiggK~~vn 288 (488)
T PRK13951 215 EEVKTLEHVSRAYYELVRMDFPRGKTIAGVGGGALTDFTGFVASTFK-R--GVGLSFYPTTL---LAQVDASVGGKNAID 288 (488)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHHh-c--CCCeEecCccH---HHHHhcCCCCCeeee
Confidence 1 146789999999999 99999999988888877775332 3 48999999998 467799999999988
Q ss_pred H
Q 009559 322 E 322 (532)
Q Consensus 322 ~ 322 (532)
.
T Consensus 289 ~ 289 (488)
T PRK13951 289 F 289 (488)
T ss_pred C
Confidence 6
No 112
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=70.36 E-value=1.1e+02 Score=29.87 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=42.1
Q ss_pred EEEEEeCCC--CcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccH
Q 009559 176 KAAIVTCGG--LCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTV 253 (532)
Q Consensus 176 kiaIvt~GG--~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~ 253 (532)
|||+|...+ .-|-...++.++-+.+..+|+. ++- ..+. .....
T Consensus 1 ~Igvi~~~~~~~~~f~~~l~~gi~~~~~~~gy~-~~~---------------------------------~~~~-~~~~~ 45 (260)
T cd06304 1 KVALVYDGGGGDKSFNQSAYEGLEKAEKELGVE-VKY---------------------------------VESV-EDADY 45 (260)
T ss_pred CEEEEecCCCCcchHHHHHHHHHHHHHHhcCce-EEE---------------------------------EecC-CHHHH
Confidence 678887652 3678888888888887777763 321 0011 11223
Q ss_pred HHHHHHHHHhCCcEEEEeCCh
Q 009559 254 SEIVDSMEERGINMLFVLGGN 274 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGd 274 (532)
.++++.|...++|++++.+.+
T Consensus 46 ~~~~~~l~~~~vdgiii~~~~ 66 (260)
T cd06304 46 EPNLRQLAAQGYDLIFGVGFG 66 (260)
T ss_pred HHHHHHHHHcCCCEEEECCcc
Confidence 467777888999999999766
No 113
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=69.83 E-value=6.1 Score=42.15 Aligned_cols=65 Identities=29% Similarity=0.427 Sum_probs=50.1
Q ss_pred cHHHHHHHHHHhCC----cEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHH
Q 009559 252 TVSEIVDSMEERGI----NMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEE 322 (532)
Q Consensus 252 ~~~~ivd~L~~~gI----d~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~ 322 (532)
..+++++.+.+.++ |.++.|||--.+..|..++-.. ++ ++++|.||-|. +..+|.+.|.-++++.
T Consensus 72 ~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~~A~~~-~r--g~p~i~VPTT~---lA~vD~~~g~K~~i~~ 140 (354)
T cd08199 72 TVLKIVDALDAFGISRRREPVLAIGGGVLTDVAGLAASLY-RR--GTPYVRIPTTL---VGLIDAGVGIKTGVNF 140 (354)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-cC--CCCEEEEcCcc---ceeeecCCCCceEEeC
Confidence 45788888899898 9999999999998888777432 23 57999999997 4455777777666653
No 114
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=69.77 E-value=34 Score=37.18 Aligned_cols=51 Identities=25% Similarity=0.387 Sum_probs=39.6
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHh-------------cCCCceEeeeecc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRK-------------RRMKVAVVGVPKT 302 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~k-------------r~~~I~VIGIPKT 302 (532)
.+++.++.+++.+.|.++-+||--+|..|..++-.... ..-+.++|.||-|
T Consensus 74 ~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTT 137 (377)
T COG1454 74 TVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTT 137 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHhhCCchhhhhcccccccCCCCCEEEecCC
Confidence 35778899999999999999999999998887744332 1123678888877
No 115
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=69.60 E-value=7 Score=41.64 Aligned_cols=65 Identities=22% Similarity=0.325 Sum_probs=50.6
Q ss_pred cHHHHHHHHHHhCC---cEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHH
Q 009559 252 TVSEIVDSMEERGI---NMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEE 322 (532)
Q Consensus 252 ~~~~ivd~L~~~gI---d~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~ 322 (532)
..+++++.+.+.+. |.++.|||--++..|..++-.. .|| ++.+.||.|.- ..+|.++|--|+++.
T Consensus 61 ~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~vA~~~-~rg--i~~i~iPTTll---a~vds~ig~k~~vn~ 128 (346)
T cd08196 61 AVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFVASIY-MRG--VSWSFVPTTLL---AQVDSCIGSKSSINV 128 (346)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHH-HcC--CCeEEecccHH---HhhhccccccceecC
Confidence 46788999999999 8999999999998888876432 344 68999999852 345777788887774
No 116
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=69.34 E-value=1.4e+02 Score=30.57 Aligned_cols=65 Identities=8% Similarity=-0.013 Sum_probs=44.5
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC-ccH
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA-PTV 253 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~-~~~ 253 (532)
-.||++...-.-|-...++.++-..+..+|+. ++-.. +... ...
T Consensus 60 ~~Igvi~~~~~~~f~~~l~~gi~~~~~~~gy~-~~~~~----------------------------------~~~~~~~~ 104 (346)
T PRK10401 60 DTIGVVVMDVSDAFFGALVKAVDLVAQQHQKY-VLIGN----------------------------------SYHEAEKE 104 (346)
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHCCCE-EEEEc----------------------------------CCCChHHH
Confidence 36899987766788888999998888888873 32100 0011 122
Q ss_pred HHHHHHHHHhCCcEEEEeCCh
Q 009559 254 SEIVDSMEERGINMLFVLGGN 274 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGd 274 (532)
.+.++.|...++|++++.+..
T Consensus 105 ~~~i~~l~~~~vdGiIi~~~~ 125 (346)
T PRK10401 105 RHAIEVLIRQRCNALIVHSKA 125 (346)
T ss_pred HHHHHHHHhcCCCEEEEeCCC
Confidence 356777888999999999754
No 117
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=69.26 E-value=15 Score=37.42 Aligned_cols=49 Identities=22% Similarity=0.408 Sum_probs=33.0
Q ss_pred HHHHHHHHhCCcEEEEeCChhhHHHHH-HHHHHHHhcCCCceEee-eecccccCCC
Q 009559 255 EIVDSMEERGINMLFVLGGNGTHAGAN-AIHNECRKRRMKVAVVG-VPKTIDNDIL 308 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdGT~~gA~-~L~ee~~kr~~~I~VIG-IPKTIDNDI~ 308 (532)
+.++...+.+.+.++++|||||+..+. .|.+ .. +.+.+| ||.==-||+.
T Consensus 48 ~~~~~~~~~~~d~ivv~GGDGTl~~v~~~l~~----~~-~~~~lgiiP~Gt~N~~a 98 (293)
T TIGR00147 48 RYVEEARKFGVDTVIAGGGDGTINEVVNALIQ----LD-DIPALGILPLGTANDFA 98 (293)
T ss_pred HHHHHHHhcCCCEEEEECCCChHHHHHHHHhc----CC-CCCcEEEEcCcCHHHHH
Confidence 344445556899999999999997654 3432 11 233455 8987788875
No 118
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=68.97 E-value=1.3e+02 Score=30.25 Aligned_cols=85 Identities=13% Similarity=0.189 Sum_probs=50.5
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHH
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVS 254 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~ 254 (532)
..||++...-..|=.+.++.++-..+..+|+. ++-. . +........
T Consensus 60 ~~Igvv~~~~~~~f~~~l~~~i~~~~~~~g~~-~~i~--------~-------------------------~~~~~~~~~ 105 (329)
T TIGR01481 60 TTVGVIIPDISNIYYAELARGIEDIATMYKYN-IILS--------N-------------------------SDEDPEKEV 105 (329)
T ss_pred CEEEEEeCCCCchhHHHHHHHHHHHHHHcCCE-EEEE--------e-------------------------CCCCHHHHH
Confidence 47899886555677788888888877777763 3210 0 000011123
Q ss_pred HHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 255 EIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
++++.|..+++|++++.+.+.+.. +.+.+.+. +++||.+
T Consensus 106 ~~~~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~--~iPvV~~ 144 (329)
T TIGR01481 106 QVLNTLLSKQVDGIIFMGGTITEK----LREEFSRS--PVPVVLA 144 (329)
T ss_pred HHHHHHHhCCCCEEEEeCCCCChH----HHHHHHhc--CCCEEEE
Confidence 566778889999999988543321 22333333 4666654
No 119
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=68.48 E-value=44 Score=35.72 Aligned_cols=51 Identities=18% Similarity=0.258 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHh-------cCC------CceEeeeeccc
Q 009559 253 VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRK-------RRM------KVAVVGVPKTI 303 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~k-------r~~------~I~VIGIPKTI 303 (532)
++++++.+++.+.|.++-|||--.+..|..++-.... .+. .+++|.||-|-
T Consensus 74 v~~~~~~~~~~~~d~IIaiGGGsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~ 137 (377)
T cd08188 74 VMAGAELYLENGCDVIIAVGGGSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTA 137 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCC
Confidence 5677888999999999999999999998776532211 111 36899999986
No 120
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=68.44 E-value=54 Score=34.85 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=40.3
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhc-----------------CCCceEeeeeccc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKR-----------------RMKVAVVGVPKTI 303 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr-----------------~~~I~VIGIPKTI 303 (532)
.++++++.+++.+.|.++-|||--.+..|..++-..... .-.+++|.||-|-
T Consensus 69 ~v~~~~~~~~~~~~d~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 137 (370)
T cd08192 69 AVEAGLAAYRAGGCDGVIAFGGGSALDLAKAVALMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTA 137 (370)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhcccccccccCCCCCCEEEecCCC
Confidence 467888999999999999999999999988876543210 1237899999885
No 121
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=67.72 E-value=11 Score=39.69 Aligned_cols=49 Identities=27% Similarity=0.430 Sum_probs=39.9
Q ss_pred cHHHHHHHHHHhCC---cEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeeccc
Q 009559 252 TVSEIVDSMEERGI---NMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTI 303 (532)
Q Consensus 252 ~~~~ivd~L~~~gI---d~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTI 303 (532)
..+++++.+++++. |.++.|||--++..|..++... .+ ++++|.||-|.
T Consensus 66 ~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~-~~--~~p~i~VPTT~ 117 (344)
T TIGR01357 66 TVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFVAATY-MR--GIRFIQVPTTL 117 (344)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEcChHHHHHHHHHHHHH-cc--CCCEEEecCch
Confidence 35678888999888 8999999999999988887422 23 47899999997
No 122
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=66.49 E-value=1.5e+02 Score=29.91 Aligned_cols=67 Identities=7% Similarity=0.028 Sum_probs=44.6
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHH
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVS 254 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~ 254 (532)
..||++...-.-|-.+.++.++...+..+|+. ++-.. +........
T Consensus 61 ~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy~-~~i~~---------------------------------~~~~~~~~~ 106 (327)
T TIGR02417 61 RTIGLVIPDLENYSYARIAKELEQQCREAGYQ-LLIAC---------------------------------SDDNPDQEK 106 (327)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHCCCE-EEEEe---------------------------------CCCCHHHHH
Confidence 47888886656677888888888888888773 32100 000011223
Q ss_pred HHHHHHHHhCCcEEEEeCChh
Q 009559 255 EIVDSMEERGINMLFVLGGNG 275 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdG 275 (532)
++++.|..+++|++++.+.+.
T Consensus 107 ~~~~~l~~~~vdgiIi~~~~~ 127 (327)
T TIGR02417 107 VVIENLLARQVDALIVASCMP 127 (327)
T ss_pred HHHHHHHHcCCCEEEEeCCCC
Confidence 567778889999999988654
No 123
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=66.47 E-value=13 Score=38.99 Aligned_cols=51 Identities=18% Similarity=0.298 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCC
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDI 307 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI 307 (532)
.++++++.+++.+.|.++.|||--.+..|..++. . .++++|.||-|.-+|-
T Consensus 66 ~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a~-~----~~~p~i~iPTT~~t~s 116 (339)
T cd08173 66 EVEKVESSARDIGADFVIGVGGGRVIDVAKVAAY-K----LGIPFISVPTAASHDG 116 (339)
T ss_pred HHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHHH-h----cCCCEEEecCcccCCc
Confidence 4678888899999999999999999999888873 2 3589999999976654
No 124
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=66.26 E-value=1.3e+02 Score=29.14 Aligned_cols=126 Identities=15% Similarity=0.161 Sum_probs=68.4
Q ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHH
Q 009559 177 AAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEI 256 (532)
Q Consensus 177 iaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~i 256 (532)
||++...-.-|-.+.+++++-..+.++|+. ++-+ . +........++
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~-~~~~--------~-------------------------~~~~~~~~~~~ 47 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALAQYGYT-VLLC--------N-------------------------TYRGGVSEADY 47 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHHHCCCE-EEEE--------e-------------------------CCCChHHHHHH
Confidence 678877777788888888988888888873 4211 0 00111123467
Q ss_pred HHHHHHhCCcEEEEeCChhhHH--HHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHHHHHhh
Q 009559 257 VDSMEERGINMLFVLGGNGTHA--GANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEA 334 (532)
Q Consensus 257 vd~L~~~gId~L~vIGGdGT~~--gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~a~~eA 334 (532)
++.|...++|++++.+..-... -+..+ +++.++ +++||.+=...++.....--+.=+..+...+++.+-. .
T Consensus 48 i~~l~~~~vdgiIi~~~~~~~~~~~~~~i-~~~~~~--~ipvV~i~~~~~~~~~~~~V~~d~~~~~~~~~~~l~~----~ 120 (273)
T cd06292 48 VEDLLARGVRGVVFISSLHADTHADHSHY-ERLAER--GLPVVLVNGRAPPPLKVPHVSTDDALAMRLAVRHLVA----L 120 (273)
T ss_pred HHHHHHcCCCEEEEeCCCCCcccchhHHH-HHHHhC--CCCEEEEcCCCCCCCCCCEEEECcHHHHHHHHHHHHH----C
Confidence 8899999999999998542211 11222 334444 4667765333332111111222334444444444432 1
Q ss_pred hhccccEEEEE
Q 009559 335 HSAYHGIGIVK 345 (532)
Q Consensus 335 ~S~~~~V~vVe 345 (532)
. ++.|+++-
T Consensus 121 -g-~~~i~~i~ 129 (273)
T cd06292 121 -G-HRRIGFAS 129 (273)
T ss_pred -C-CceEEEEe
Confidence 2 45677663
No 125
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=66.20 E-value=1.7e+02 Score=30.26 Aligned_cols=93 Identities=13% Similarity=0.084 Sum_probs=54.8
Q ss_pred cCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccC
Q 009559 170 FKPEEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRG 249 (532)
Q Consensus 170 f~p~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~ 249 (532)
+--+...||++...-.-|..+.++.++.+.+..+|...++ +.++..
T Consensus 20 ~~~~~~~Igvv~~~~~~~f~~~~~~gi~~~a~~~g~~~~~----------------------------------~~~~~~ 65 (330)
T PRK15395 20 AAAADTRIGVTIYKYDDNFMSVVRKAIEKDAKAAPDVQLL----------------------------------MNDSQN 65 (330)
T ss_pred hhcCCceEEEEEecCcchHHHHHHHHHHHHHHhcCCeEEE----------------------------------EecCCC
Confidence 3335577888776556678888888888877666421221 111221
Q ss_pred Ccc-HHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeee
Q 009559 250 APT-VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVP 300 (532)
Q Consensus 250 ~~~-~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIP 300 (532)
..+ ..+.++.|..+++|++++.+.+..... ..+ +++++.+ |+||.+=
T Consensus 66 ~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~l-~~l~~~g--iPvV~vd 113 (330)
T PRK15395 66 DQSKQNDQIDVLLAKGVKALAINLVDPAAAP-TVI-EKARGQD--VPVVFFN 113 (330)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccCHHHHH-HHH-HHHHHCC--CcEEEEc
Confidence 222 234677788999999999987754332 223 3444444 5666553
No 126
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=65.55 E-value=87 Score=33.15 Aligned_cols=158 Identities=14% Similarity=0.077 Sum_probs=89.5
Q ss_pred EEEeCCCCcchHHH--HHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC-----
Q 009559 178 AIVTCGGLCPGLND--VIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA----- 250 (532)
Q Consensus 178 aIvt~GG~cPGlNa--vIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~----- 250 (532)
-|+.+||+ |=++. .+..++..+...+. +.+|+-|.+..... +..+|++.++.+...|=.++..+-.+
T Consensus 162 eV~lsGGD-PLl~~d~~L~~ll~~L~~i~~--~~~IRi~tr~~~~~---P~rit~el~~~L~~~~~~~~~vsh~nh~~Ei 235 (331)
T TIGR00238 162 EILISGGD-PLMAKDHELEWLLKRLEEIPH--LVRLRIGTRLPVVI---PQRITDELCELLASFELQLMLVTHINHCNEI 235 (331)
T ss_pred EEEEECCc-cccCCHHHHHHHHHHHHhcCC--ccEEEeecCCCccC---chhcCHHHHHHHHhcCCcEEEEccCCChHhC
Confidence 58888998 55433 47788887765542 44556555533211 12257777777766653333333211
Q ss_pred -ccHHHHHHHHHHhCCc----EEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHH
Q 009559 251 -PTVSEIVDSMEERGIN----MLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQR 325 (532)
Q Consensus 251 -~~~~~ivd~L~~~gId----~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~ 325 (532)
+...+.++.|++.||. .++.=|=+++.....+|.+.+.+.|.. |=.+..=. .+..+=-|.+-.+.+.+
T Consensus 236 ~~~~~~ai~~L~~aGi~v~~qtvLl~gvnD~~~~l~~L~~~l~~~gV~------pyyl~~~~-~~~g~~~f~~~~~~~~~ 308 (331)
T TIGR00238 236 TEEFAEAMKKLRTVNVTLLNQSVLLRGVNDRAQILAKLSIALFKVGII------PYYLHYLD-KVQGAKHFLVPDAEAAQ 308 (331)
T ss_pred CHHHHHHHHHHHHcCCEEEeecceECCcCCCHHHHHHHHHHHhhcCee------cCeecCcC-CCCCcccccCCHHHHHH
Confidence 2345677888888874 345667677777777777766554431 11111100 01112348888888888
Q ss_pred HHHHHHHhhhhccccEEEEEecC
Q 009559 326 AINSAYIEAHSAYHGIGIVKLMG 348 (532)
Q Consensus 326 aI~~a~~eA~S~~~~V~vVevMG 348 (532)
.+..++.-..+.----+++++.|
T Consensus 309 i~~~l~~~~sG~~~P~~v~~~~g 331 (331)
T TIGR00238 309 IVKELARLTSGYLVPKFAVEIMG 331 (331)
T ss_pred HHHHHHhcCCCCcceeEEecCCC
Confidence 88877654433211246777665
No 127
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=65.11 E-value=1.4e+02 Score=29.08 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
.+.++.+...++|++++.+.+.. ....+.+++++.+ ++||.+
T Consensus 45 ~~~i~~~~~~~~Dgiii~~~~~~--~~~~~i~~~~~~~--iPvV~~ 86 (282)
T cd06318 45 IADVEDLLTRGVNVLIINPVDPE--GLVPAVAAAKAAG--VPVVVV 86 (282)
T ss_pred HHHHHHHHHcCCCEEEEecCCcc--chHHHHHHHHHCC--CCEEEe
Confidence 46778888999999999776532 1122334444444 556654
No 128
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=64.82 E-value=13 Score=39.02 Aligned_cols=48 Identities=23% Similarity=0.391 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTID 304 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTID 304 (532)
.++++++.+++.++|.++-|||--.+..|..++-. .++++|.||-|-.
T Consensus 65 ~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~-----~~~p~i~IPTtat 112 (337)
T cd08177 65 VTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALR-----TGLPIIAIPTTLS 112 (337)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHH-----hcCCEEEEcCCch
Confidence 46788899999999999999999999999888743 2688999998853
No 129
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=64.73 E-value=15 Score=39.45 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhc--------------CCCceEeeeecc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKR--------------RMKVAVVGVPKT 302 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr--------------~~~I~VIGIPKT 302 (532)
..+++++.+++.+.|.++-|||--.+..|..++-.+... ...+++|.||-|
T Consensus 72 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 136 (383)
T cd08186 72 QVDEAAKLGREFGAQAVIAIGGGSPIDSAKSAAILLEHPGKTARDLYEFKFTPEKALPLIAINLT 136 (383)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCC
Confidence 456888999999999999999999999988887543211 124789999976
No 130
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=64.44 E-value=14 Score=39.04 Aligned_cols=50 Identities=16% Similarity=0.289 Sum_probs=40.9
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccC
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDND 306 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDND 306 (532)
.++++++.+++.+.|.++.|||--.+..|..++ + .+ ++++|.||-|.-+|
T Consensus 75 ~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA-~--~r--gip~I~IPTT~~td 124 (350)
T PRK00843 75 EVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAA-Y--RL--GIPFISVPTAASHD 124 (350)
T ss_pred HHHHHHHHhhccCCCEEEEeCCchHHHHHHHHH-H--hc--CCCEEEeCCCccCC
Confidence 467888999999999999999999998888777 2 22 57899999996543
No 131
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=64.29 E-value=5.6 Score=42.37 Aligned_cols=66 Identities=24% Similarity=0.336 Sum_probs=42.9
Q ss_pred CCHHHHhhhhhcCCcceecccCCc-----cHHHHHHHHHHhCC-----------------cEEEEeCChhhHHHHH-HHH
Q 009559 228 LSRKVVQNIHLSGGSLLGVSRGAP-----TVSEIVDSMEERGI-----------------NMLFVLGGNGTHAGAN-AIH 284 (532)
Q Consensus 228 Lt~~~V~~i~~~GGSiLGTSR~~~-----~~~~ivd~L~~~gI-----------------d~L~vIGGdGT~~gA~-~L~ 284 (532)
|+++.+......-||-.|-==.+. -...+++.|++-|| |++|-+|||||+-.|. ++.
T Consensus 47 lspdql~q~L~srgtdv~~ll~~hKvhkn~~~~~~~~l~k~giesklv~R~~lsq~i~waD~VisvGGDGTfL~Aasrv~ 126 (395)
T KOG4180|consen 47 LSPDQLLQYLESRGTDVGRLLSKHKVHKNAIKFCQEELSKAGIESKLVSRNDLSQPIRWADMVISVGGDGTFLLAASRVI 126 (395)
T ss_pred CCHHHHHHHHHhcCchHHHHHHHhHHHHHHHHHHHHHHhhCCcceeeeehhhccCcCchhhEEEEecCccceeehhhhhh
Confidence 677777766655555443211111 23557777777776 8999999999996544 344
Q ss_pred HHHHhcCCCceEeee
Q 009559 285 NECRKRRMKVAVVGV 299 (532)
Q Consensus 285 ee~~kr~~~I~VIGI 299 (532)
+ -..+||||
T Consensus 127 ~------~~~PViGv 135 (395)
T KOG4180|consen 127 D------DSKPVIGV 135 (395)
T ss_pred c------cCCceeee
Confidence 3 36899998
No 132
>PLN02834 3-dehydroquinate synthase
Probab=63.51 E-value=7.9 Score=42.55 Aligned_cols=64 Identities=23% Similarity=0.348 Sum_probs=47.6
Q ss_pred cHHHHHHHHHHhCCc---EEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHH
Q 009559 252 TVSEIVDSMEERGIN---MLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVE 321 (532)
Q Consensus 252 ~~~~ivd~L~~~gId---~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~ 321 (532)
..+++++.+.++++| .++.|||--.+..|..++-.. .| ++++|.||-|. +..+|.+.|--++++
T Consensus 148 ~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak~~A~~y-~r--giplI~VPTTl---lA~vDss~ggK~~i~ 214 (433)
T PLN02834 148 TLMKVFDKALESRLDRRCTFVALGGGVIGDMCGFAAASY-QR--GVNFVQIPTTV---MAQVDSSVGGKTGVN 214 (433)
T ss_pred HHHHHHHHHHhcCCCcCcEEEEECChHHHHHHHHHHHHh-cC--CCCEEEECCcC---CeEEecCCCceeEEe
Confidence 456788899999998 999999999998887765322 23 57999999995 445566666555544
No 133
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=63.35 E-value=13 Score=39.30 Aligned_cols=50 Identities=20% Similarity=0.407 Sum_probs=42.2
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccC
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDND 306 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDND 306 (532)
..+++++.+++.++|.++-|||--.+..|..++.. +++++|.||-|--.+
T Consensus 64 ~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~-----~~~p~i~VPTT~gtg 113 (347)
T cd08172 64 NIERLAAQAKENGADVIIGIGGGKVLDTAKAVADR-----LGVPVITVPTLAATC 113 (347)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHH-----hCCCEEEecCccccC
Confidence 46788999999999999999999999999988754 268999999986443
No 134
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=63.23 E-value=14 Score=38.42 Aligned_cols=52 Identities=23% Similarity=0.367 Sum_probs=41.9
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccC
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDND 306 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDND 306 (532)
..+++++.+++.+.|.++-|||--.+..|..++-... + ++++|.||-|.-.+
T Consensus 66 ~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~-~--~~p~i~iPTt~~tg 117 (332)
T cd07766 66 EVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLN-R--GLPIIIVPTTAATG 117 (332)
T ss_pred HHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhc-C--CCCEEEEeCCCchh
Confidence 4568888899999999999999999999888875432 2 57899999885443
No 135
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=63.14 E-value=1.5e+02 Score=28.58 Aligned_cols=76 Identities=12% Similarity=0.180 Sum_probs=42.0
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCC-ccCCh--hhHHHHHHHHHHHH
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMD-KTFGF--DTAVEEAQRAINSA 330 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD-~SfGF--dTAv~~a~~aI~~a 330 (532)
.++++.+...++|++++++.+.+.. +.++++++ +++||.+ |++.+... .++++ ..+.+.+++.+.+
T Consensus 45 ~~~i~~l~~~~vdgiii~~~~~~~~----~~~~l~~~--~ipvV~~----~~~~~~~~~~~v~~d~~~~~~~~~~~l~~- 113 (268)
T cd06298 45 LKVLNNLLAKQVDGIIFMGGKISEE----HREEFKRS--PTPVVLA----GSVDEDNELPSVNIDYKKAAFEATELLIK- 113 (268)
T ss_pred HHHHHHHHHhcCCEEEEeCCCCcHH----HHHHHhcC--CCCEEEE----ccccCCCCCCEEEECcHHHHHHHHHHHHH-
Confidence 4567777889999999998654432 22334333 4667766 33322211 23343 3555555555433
Q ss_pred HHhhhhccccEEEEE
Q 009559 331 YIEAHSAYHGIGIVK 345 (532)
Q Consensus 331 ~~eA~S~~~~V~vVe 345 (532)
.. +.+|.++-
T Consensus 114 ----~g-~~~i~~l~ 123 (268)
T cd06298 114 ----NG-HKKIAFIS 123 (268)
T ss_pred ----cC-CceEEEEe
Confidence 12 45677774
No 136
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=62.95 E-value=15 Score=38.79 Aligned_cols=47 Identities=21% Similarity=0.393 Sum_probs=40.3
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeeccc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTI 303 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTI 303 (532)
+++++++.+++.+.|.++-|||--.+..|..++-. .++++|.||-|-
T Consensus 65 ~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~-----~~~P~iaIPTTa 111 (351)
T cd08170 65 EIERLAEIARDNGADVVIGIGGGKTLDTAKAVADY-----LGAPVVIVPTIA 111 (351)
T ss_pred HHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHH-----cCCCEEEeCCcc
Confidence 35688888999999999999999999999988743 368999999884
No 137
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=62.60 E-value=1.6e+02 Score=28.97 Aligned_cols=64 Identities=14% Similarity=0.106 Sum_probs=45.4
Q ss_pred EEEEEeCC---CCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCcc
Q 009559 176 KAAIVTCG---GLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPT 252 (532)
Q Consensus 176 kiaIvt~G---G~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~ 252 (532)
|||++... -.-|-.+.++.++.+.+.++|+. ++-. . +....+
T Consensus 1 ~I~~i~~~~~~~~~~f~~~~~~gi~~~~~~~gy~-~~i~-~---------------------------------~~~~~~ 45 (265)
T cd06354 1 KVALVTDVGGLGDKSFNQSAWEGLERAAKELGIE-YKYV-E---------------------------------SKSDAD 45 (265)
T ss_pred CEEEEeCCCCcCchhHHHHHHHHHHHHHHHcCCe-EEEE-e---------------------------------cCCHHH
Confidence 68888876 36799999999999999998884 3211 0 001112
Q ss_pred HHHHHHHHHHhCCcEEEEeCCh
Q 009559 253 VSEIVDSMEERGINMLFVLGGN 274 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGd 274 (532)
..+.++.|...++|++++.+-.
T Consensus 46 ~~~~i~~l~~~~vdgiI~~~~~ 67 (265)
T cd06354 46 YEPNLEQLADAGYDLIVGVGFL 67 (265)
T ss_pred HHHHHHHHHhCCCCEEEEcCcc
Confidence 3456788899999999998743
No 138
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=61.99 E-value=17 Score=39.10 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHH
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIH 284 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ 284 (532)
.++++++.+++.++|.++-|||--++..|..++
T Consensus 66 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~iA 98 (398)
T cd08178 66 TVRKGLELMNSFKPDTIIALGGGSPMDAAKIMW 98 (398)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 356888899999999999999999999988876
No 139
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=61.88 E-value=17 Score=38.79 Aligned_cols=52 Identities=25% Similarity=0.272 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhc----------------CCCceEeeeeccc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKR----------------RMKVAVVGVPKTI 303 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr----------------~~~I~VIGIPKTI 303 (532)
.++++++.+++.++|.++-|||--++..|..++-..... ...+++|.||-|-
T Consensus 69 ~v~~~~~~~~~~~~D~IIavGGGSviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTta 136 (375)
T cd08179 69 TVLKGAEAMREFEPDWIIALGGGSPIDAAKAMWIFYEYPELTFEDIVKPFTLPELRNKARFCAIPSTS 136 (375)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCcCHHHHhccccccccCCCCCEEEeCCCC
Confidence 356888999999999999999999999998876321110 1246899999773
No 140
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=61.44 E-value=73 Score=32.17 Aligned_cols=104 Identities=16% Similarity=0.110 Sum_probs=65.0
Q ss_pred cchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC---ccHHHHHHHHHH
Q 009559 186 CPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA---PTVSEIVDSMEE 262 (532)
Q Consensus 186 cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~---~~~~~ivd~L~~ 262 (532)
+|.-......+++.+..+|+++|.-+..- ..+. ...-....+.+...|+.+....... .+...++..+++
T Consensus 117 ~~~~~~~~~~~~~~l~~~g~~~v~~l~~~------~~~~-~~~~~~~~~~~~~~G~~~~~~~~~~~~~~d~~~~~~~l~~ 189 (336)
T cd06326 117 RASYADEIAAIVRHLVTLGLKRIAVFYQD------DAFG-KDGLAGVEKALAARGLKPVATASYERNTADVAAAVAQLAA 189 (336)
T ss_pred CCChHHHHHHHHHHHHHhCCceEEEEEec------Ccch-HHHHHHHHHHHHHcCCCeEEEEeecCCcccHHHHHHHHHh
Confidence 45666777888888888888877554221 1110 0111223445666777776654433 467778888888
Q ss_pred hCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 263 RGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 263 ~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
.+.+++|+.+-+. .+..+.+.+++.|++++++++
T Consensus 190 ~~~dav~~~~~~~---~a~~~i~~~~~~G~~~~~~~~ 223 (336)
T cd06326 190 ARPQAVIMVGAYK---AAAAFIRALRKAGGGAQFYNL 223 (336)
T ss_pred cCCCEEEEEcCcH---HHHHHHHHHHhcCCCCcEEEE
Confidence 8899888876332 233445677788888877765
No 141
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=61.28 E-value=1.7e+02 Score=28.70 Aligned_cols=85 Identities=14% Similarity=0.117 Sum_probs=51.6
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHH
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSE 255 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ 255 (532)
+||+|...-.-|-...+++++.+.+..+|+. +.- + ++.......+
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~g~~-~~~--------~--------------------------~~~~~~~~~~ 45 (289)
T cd01540 1 KIGFIVKQPEEPWFQTEWKFAKKAAKEKGFT-VVK--------I--------------------------DVPDGEKVLS 45 (289)
T ss_pred CeeeecCCCCCcHHHHHHHHHHHHHHHcCCE-EEE--------c--------------------------cCCCHHHHHH
Confidence 4677775555677888888888888888773 320 0 0111112235
Q ss_pred HHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 256 IVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 256 ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
.++.+...++|++++.+-|... ...+.+++++. +|+||.+
T Consensus 46 ~i~~~~~~~~dgiii~~~~~~~--~~~~~~~~~~~--~iPvV~~ 85 (289)
T cd01540 46 AIDNLGAQGAKGFVICVPDVKL--GPAIVAKAKAY--NMKVVAV 85 (289)
T ss_pred HHHHHHHcCCCEEEEccCchhh--hHHHHHHHHhC--CCeEEEe
Confidence 6777888999999999876322 12233444443 4677754
No 142
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=61.27 E-value=14 Score=39.51 Aligned_cols=63 Identities=24% Similarity=0.356 Sum_probs=46.6
Q ss_pred cHHHHHHHHHHhCCc---EEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHH
Q 009559 252 TVSEIVDSMEERGIN---MLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAV 320 (532)
Q Consensus 252 ~~~~ivd~L~~~gId---~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv 320 (532)
..+++++.+.+.++| .++.|||--.+..|..++-.. .+ ++++|.||-|. +..+|.++|--+++
T Consensus 69 ~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~A~~~-~r--gip~I~IPTTl---la~~da~i~~k~~v 134 (355)
T cd08197 69 TLSDLVERALALGATRRSVIVALGGGVVGNIAGLLAALL-FR--GIRLVHIPTTL---LAQSDSVLSLKQAV 134 (355)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHh-cc--CCCEEEecCcc---cccccccccCceee
Confidence 467889999999998 999999998888887776432 23 47899999986 34455555544443
No 143
>PRK06186 hypothetical protein; Validated
Probab=61.14 E-value=13 Score=37.78 Aligned_cols=57 Identities=21% Similarity=0.297 Sum_probs=38.2
Q ss_pred CCcEEEEeCChhhH--HHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHHHHHhhhh
Q 009559 264 GINMLFVLGGNGTH--AGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHS 336 (532)
Q Consensus 264 gId~L~vIGGdGT~--~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~a~~eA~S 336 (532)
++|+++|.||.|.- .|.....+++++++ |++.|| |+|++.|+=+.++-+... .+|.|
T Consensus 53 ~~dgilvpgGfg~rg~~Gki~ai~~Are~~--iP~LGI-------------ClGmQ~avIe~arnv~g~-~dA~s 111 (229)
T PRK06186 53 GFDGIWCVPGSPYRNDDGALTAIRFARENG--IPFLGT-------------CGGFQHALLEYARNVLGW-ADAAH 111 (229)
T ss_pred hCCeeEeCCCCCcccHhHHHHHHHHHHHcC--CCeEee-------------chhhHHHHHHHHhhhcCC-cCCCc
Confidence 78999999999964 44555557776544 556665 999999766665544322 34544
No 144
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=60.37 E-value=1.7e+02 Score=28.33 Aligned_cols=85 Identities=11% Similarity=0.066 Sum_probs=50.8
Q ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHH
Q 009559 177 AAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEI 256 (532)
Q Consensus 177 iaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~i 256 (532)
||++...=.-|-.+.++.++.+.+.++|+. ++- .. +........+.
T Consensus 2 igvi~p~~~~~~~~~~~~gi~~~~~~~~~~-~~~-~~--------------------------------~~~~~~~~~~~ 47 (265)
T cd06285 2 IGVLVPRLTDTVMATMYEGIEEAAAERGYS-TFV-AN--------------------------------TGDNPDAQRRA 47 (265)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHHCCCE-EEE-Ee--------------------------------CCCCHHHHHHH
Confidence 566665545678888888888888888773 321 00 00111123456
Q ss_pred HHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeec
Q 009559 257 VDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPK 301 (532)
Q Consensus 257 vd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPK 301 (532)
++.+...++|++++.+-+.... .+ +++.+.+ ++||.+=.
T Consensus 48 i~~l~~~~~dgiii~~~~~~~~---~~-~~~~~~~--iPvv~~~~ 86 (265)
T cd06285 48 IEMLLDRRVDGLILGDARSDDH---FL-DELTRRG--VPFVLVLR 86 (265)
T ss_pred HHHHHHcCCCEEEEecCCCChH---HH-HHHHHcC--CCEEEEcc
Confidence 7788999999999987554432 23 3444444 55665533
No 145
>PRK15138 aldehyde reductase; Provisional
Probab=58.98 E-value=21 Score=38.47 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=39.4
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcC----------------CCceEeeeecc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRR----------------MKVAVVGVPKT 302 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~----------------~~I~VIGIPKT 302 (532)
.++++++.+++.++|.++-|||--++..|..++-.....+ ..+++|.||-|
T Consensus 73 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~iaVPTT 139 (387)
T PRK15138 73 TLMKAVKLVREEKITFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILETGGKEIKSAIPMGSVLTL 139 (387)
T ss_pred HHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHHhccCCCcCCCCCEEEEecC
Confidence 4678888999999999999999999999988864321111 23688999976
No 146
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=58.93 E-value=1.4e+02 Score=28.38 Aligned_cols=95 Identities=12% Similarity=0.045 Sum_probs=60.0
Q ss_pred HHHHHHHHcCCceEEEEccc-ccccccCCceeecCCHHHHhhhhhcCC-cceecccCCccHHHHHHHH--HHhCCcEEEE
Q 009559 195 HIVITLEIYGVKNIVGIPFG-YRGFCDKELTEMPLSRKVVQNIHLSGG-SLLGVSRGAPTVSEIVDSM--EERGINMLFV 270 (532)
Q Consensus 195 ~iv~~l~~ygv~~V~Gi~~G-y~GL~~~~~~~i~Lt~~~V~~i~~~GG-SiLGTSR~~~~~~~ivd~L--~~~gId~L~v 270 (532)
.+++.|..+|++.|||+.++ ...|++ .+....| .++ .+|......-+.+.. ...++-.+++
T Consensus 2 ~l~~~L~~~Gv~~vFg~pG~~~~~l~~--------------al~~~~~i~~v-~~rhE~~A~~mAdgyar~sg~~gv~~~ 66 (162)
T cd07037 2 ALVEELKRLGVRDVVISPGSRSAPLAL--------------AAAEHPEFRLH-VRVDERSAAFFALGLAKASGRPVAVVC 66 (162)
T ss_pred hHHHHHHHCCCCEEEECCCcchHHHHH--------------HHHhCCCceEE-eccChHHHHHHHHHHHHhhCCCEEEEE
Confidence 36788899999999998876 333332 2211222 233 345444333333322 2246888999
Q ss_pred eCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCC
Q 009559 271 LGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDI 307 (532)
Q Consensus 271 IGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI 307 (532)
..|=|+......|++... -+++|+.|..+...+.
T Consensus 67 t~GpG~~n~~~gl~~A~~---~~~Pvl~i~g~~~~~~ 100 (162)
T cd07037 67 TSGTAVANLLPAVVEAYY---SGVPLLVLTADRPPEL 100 (162)
T ss_pred CCchHHHHHhHHHHHHHh---cCCCEEEEECCCCHHh
Confidence 999999988888886543 3578888877766543
No 147
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=58.93 E-value=35 Score=33.38 Aligned_cols=93 Identities=18% Similarity=0.280 Sum_probs=62.1
Q ss_pred EEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCce------ee-cCCHHHHhhhhhcCCcceecccCC
Q 009559 178 AIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELT------EM-PLSRKVVQNIHLSGGSLLGVSRGA 250 (532)
Q Consensus 178 aIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~------~i-~Lt~~~V~~i~~~GGSiLGTSR~~ 250 (532)
+++.+||+-|-.... ..+... ...+++.-.|..=|++.++. ++ .++++..+.+...|-.+.-....+
T Consensus 1 ~~Ii~~g~~~~~~~~-----~~~~~~-~~~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~~K 74 (208)
T cd07995 1 ALILLGGPLPDSPLL-----LKLWKK-ADLIIAADGGANHLLDLGIVPDLIIGDFDSISPEVLEYYKSKGVEIIHFPDEK 74 (208)
T ss_pred CEEEECCcCCcchhH-----HHhhcc-CCEEEEEChHHHHHHHcCCCCCEEEecCcCCCHHHHHHHHhcCCeEEECCCCC
Confidence 367788888755543 222222 23588999999777664321 12 267777777766544455444422
Q ss_pred --ccHHHHHHHHHHhCCcEEEEeCChhh
Q 009559 251 --PTVSEIVDSMEERGINMLFVLGGNGT 276 (532)
Q Consensus 251 --~~~~~ivd~L~~~gId~L~vIGGdGT 276 (532)
-|.+++++.+.+++.+-++++|+-|.
T Consensus 75 D~TD~e~Al~~~~~~~~~~i~i~Ga~Gg 102 (208)
T cd07995 75 DFTDFEKALKLALERGADEIVILGATGG 102 (208)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEccCCC
Confidence 27899999999999999999999886
No 148
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=58.60 E-value=21 Score=37.89 Aligned_cols=52 Identities=17% Similarity=0.317 Sum_probs=40.7
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHh-----------------cCCCceEeeeeccc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRK-----------------RRMKVAVVGVPKTI 303 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~k-----------------r~~~I~VIGIPKTI 303 (532)
.++++++.+++.++|.++-|||--.+..|..++-.... ...++++|.||-|-
T Consensus 65 ~v~~~~~~~~~~~~D~IIavGGGs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 133 (367)
T cd08182 65 DLAAGIRLLREFGPDAVLAVGGGSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTA 133 (367)
T ss_pred HHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCC
Confidence 45688889999999999999999999998888754211 01357899999884
No 149
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=58.25 E-value=22 Score=37.82 Aligned_cols=50 Identities=30% Similarity=0.458 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccC
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDND 306 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDND 306 (532)
.++++++.+++.+.|.++-|||--.+..|..++-. .++++|.||-|--.|
T Consensus 72 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~-----~~~p~i~IPTtagtg 121 (366)
T PRK09423 72 EIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADY-----LGVPVVIVPTIASTD 121 (366)
T ss_pred HHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHH-----cCCCEEEeCCccccC
Confidence 45688899999999999999999999999888732 358899999884333
No 150
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=58.00 E-value=1.2e+02 Score=28.23 Aligned_cols=83 Identities=18% Similarity=0.284 Sum_probs=50.3
Q ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCC-HHHHhhhhhcCCcceecccC----Cc
Q 009559 177 AAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLS-RKVVQNIHLSGGSLLGVSRG----AP 251 (532)
Q Consensus 177 iaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt-~~~V~~i~~~GGSiLGTSR~----~~ 251 (532)
|-|-|.||+.=-+..-|-+. .|+.+|+ +|+= .| +..+ ++.++......-.++|-|-- ..
T Consensus 2 vvigtv~gD~HdiGkniv~~--~L~~~Gf-eVid-----LG--------~~v~~e~~v~aa~~~~adiVglS~L~t~~~~ 65 (128)
T cd02072 2 IVLGVIGSDCHAVGNKILDH--AFTEAGF-NVVN-----LG--------VLSPQEEFIDAAIETDADAILVSSLYGHGEI 65 (128)
T ss_pred EEEEEeCCchhHHHHHHHHH--HHHHCCC-EEEE-----CC--------CCCCHHHHHHHHHHcCCCEEEEeccccCCHH
Confidence 45667777765554422222 3457888 4531 11 1123 34556655555556665441 23
Q ss_pred cHHHHHHHHHHhCC-cEEEEeCChh
Q 009559 252 TVSEIVDSMEERGI-NMLFVLGGNG 275 (532)
Q Consensus 252 ~~~~ivd~L~~~gI-d~L~vIGGdG 275 (532)
...++++.|++.++ +..+++||.-
T Consensus 66 ~~~~~~~~l~~~gl~~v~vivGG~~ 90 (128)
T cd02072 66 DCKGLREKCDEAGLKDILLYVGGNL 90 (128)
T ss_pred HHHHHHHHHHHCCCCCCeEEEECCC
Confidence 57889999999999 8889999983
No 151
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=57.57 E-value=20 Score=38.29 Aligned_cols=52 Identities=23% Similarity=0.294 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHh------------------cCCCceEeeeeccc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRK------------------RRMKVAVVGVPKTI 303 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~k------------------r~~~I~VIGIPKTI 303 (532)
.++++++.+++.++|.++-|||--.+..|..++-.... .+..+++|.||-|-
T Consensus 71 ~v~~~~~~~~~~~~D~IiavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTta 140 (380)
T cd08185 71 TVMEGAALAREEGCDFVVGLGGGSSMDTAKAIAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTA 140 (380)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCC
Confidence 35678888999999999999999999998887643210 01257899999875
No 152
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=57.54 E-value=1.8e+02 Score=27.83 Aligned_cols=82 Identities=15% Similarity=0.247 Sum_probs=48.9
Q ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHH
Q 009559 177 AAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEI 256 (532)
Q Consensus 177 iaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~i 256 (532)
||++...-.-|-...++.++...+..+|+. +.-+ . +. ...+..++
T Consensus 2 I~~i~~~~~~~~~~~~~~~i~~~~~~~g~~-~~~~--------~-------------------------~~-~~~~~~~~ 46 (266)
T cd06278 2 IGVVVADLDNPFYSELLEALSRALQARGYQ-PLLI--------N-------------------------TD-DDEDLDAA 46 (266)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHCCCe-EEEE--------c-------------------------CC-CCHHHHHH
Confidence 566665545677777888887777777763 3210 0 00 01123456
Q ss_pred HHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 257 VDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 257 vd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
++.+.+.++|++++...+.+-. . .+.+.+. +++||.+
T Consensus 47 i~~~~~~~vdgiii~~~~~~~~---~-~~~~~~~--~ipvV~~ 83 (266)
T cd06278 47 LRQLLQYRVDGVIVTSGTLSSE---L-AEECRRN--GIPVVLI 83 (266)
T ss_pred HHHHHHcCCCEEEEecCCCCHH---H-HHHHhhc--CCCEEEE
Confidence 6778889999999998764432 1 2334443 4677766
No 153
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=57.16 E-value=24 Score=37.39 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=40.3
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHh------------cCCCceEeeeeccc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRK------------RRMKVAVVGVPKTI 303 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~k------------r~~~I~VIGIPKTI 303 (532)
..+++++.+++.+.|.++-|||--++..|..++-.... ....+++|.||-|-
T Consensus 71 ~v~~~~~~~~~~~~D~IIavGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTta 134 (357)
T cd08181 71 TIMEAVEIAKKFNADFVIGIGGGSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTA 134 (357)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCC
Confidence 35688899999999999999999999999877632110 12257899999884
No 154
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=57.15 E-value=1.9e+02 Score=27.86 Aligned_cols=65 Identities=8% Similarity=0.015 Sum_probs=40.8
Q ss_pred EEEEeCCC-CcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHH
Q 009559 177 AAIVTCGG-LCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSE 255 (532)
Q Consensus 177 iaIvt~GG-~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ 255 (532)
||+|.-.- .-|-...+++++-+.+..+|+. +.-+. ++.....-.+
T Consensus 2 ig~v~~~~~~~~~~~~~~~~i~~~~~~~g~~-~~~~~---------------------------------~~~~~~~~~~ 47 (269)
T cd06288 2 IGLISDEIATTPFAVEIILGAQDAAREHGYL-LLVVN---------------------------------TGGDDELEAE 47 (269)
T ss_pred eEEEeCCCCCCccHHHHHHHHHHHHHHCCCE-EEEEe---------------------------------CCCCHHHHHH
Confidence 56666553 5566777888887777777763 21100 0111112346
Q ss_pred HHHHHHHhCCcEEEEeCChh
Q 009559 256 IVDSMEERGINMLFVLGGNG 275 (532)
Q Consensus 256 ivd~L~~~gId~L~vIGGdG 275 (532)
+++.+.+.++|++++.+-+.
T Consensus 48 ~~~~l~~~~~dgiii~~~~~ 67 (269)
T cd06288 48 AVEALLDHRVDGIIYATMYH 67 (269)
T ss_pred HHHHHHHcCCCEEEEecCCC
Confidence 77888999999999998654
No 155
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=56.76 E-value=20 Score=37.79 Aligned_cols=47 Identities=15% Similarity=0.326 Sum_probs=39.4
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeeccc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTI 303 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTI 303 (532)
.++++++..++.+.|.++-|||--.+..|..++-. +++++|.||-|-
T Consensus 66 ~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~-----~~~p~i~VPTt~ 112 (345)
T cd08171 66 NVERLKKNPAVQEADMIFAVGGGKAIDTVKVLADK-----LGKPVFTFPTIA 112 (345)
T ss_pred HHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHH-----cCCCEEEecCcc
Confidence 34577788889999999999999999999888754 367999999874
No 156
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=56.61 E-value=1.9e+02 Score=27.87 Aligned_cols=83 Identities=14% Similarity=0.180 Sum_probs=48.6
Q ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHH
Q 009559 177 AAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEI 256 (532)
Q Consensus 177 iaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~i 256 (532)
||++...=.-|-.+.++.++.+.+..+|+. +.- +-+........++
T Consensus 2 igvi~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~---------------------------------~~~~~~~~~~~~~ 47 (264)
T cd06274 2 IGLIIPDLENRSFARIAKRLEALARERGYQ-LLI---------------------------------ACSDDDPETERET 47 (264)
T ss_pred EEEEeccccCchHHHHHHHHHHHHHHCCCE-EEE---------------------------------EeCCCCHHHHHHH
Confidence 556655545566677777777766666662 321 0111112234578
Q ss_pred HHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 257 VDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 257 vd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
++.|..+++|++++.+.+..-.. + +++++. +++||.+
T Consensus 48 i~~l~~~~vdgiii~~~~~~~~~---~-~~~~~~--~ipvV~~ 84 (264)
T cd06274 48 VETLIARQVDALIVAGSLPPDDP---Y-YLCQKA--GLPVVAL 84 (264)
T ss_pred HHHHHHcCCCEEEEcCCCCchHH---H-HHHHhc--CCCEEEe
Confidence 88899999999999988642211 2 234443 4667766
No 157
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=56.42 E-value=23 Score=37.37 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=42.1
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCC
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDI 307 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI 307 (532)
.++++++.+++.+.|.++-|||--.+..|..++.. ..+++|.||-|--.+-
T Consensus 65 ~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~-----~~~p~i~VPTtagtgs 115 (349)
T cd08550 65 EVVKALCGAEEQEADVIIGVGGGKTLDTAKAVADR-----LDKPIVIVPTIASTCA 115 (349)
T ss_pred HHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHH-----cCCCEEEeCCccccCc
Confidence 46788899999999999999999999999888743 3578999999854443
No 158
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=56.21 E-value=2e+02 Score=27.99 Aligned_cols=88 Identities=7% Similarity=0.017 Sum_probs=47.2
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC-ccHH
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA-PTVS 254 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~-~~~~ 254 (532)
|||+|...-.-|-...++.++...+..+|.. ++... ..+.+-.. ....
T Consensus 1 ~ig~v~~~~~~~~~~~~~~~i~~~~~~~g~~-~~~~~------------------------------~~~~~~~~~~~~~ 49 (275)
T cd06307 1 RLGFLLPKGSNAFYRELAAALEAAAAAFPDA-RIRVR------------------------------IHFVESFDPAALA 49 (275)
T ss_pred CeEEEeCCCCChHHHHHHHHHHHHHhhhhcc-CceEE------------------------------EEEccCCCHHHHH
Confidence 4677776656666777777777776666542 11100 00000001 1123
Q ss_pred HHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 255 EIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
+.++.+.+ ++|+++++..+.+.. ...-+++.+. +++||.+
T Consensus 50 ~~i~~~~~-~vdgiii~~~~~~~~--~~~i~~~~~~--~ipvV~~ 89 (275)
T cd06307 50 AALLRLGA-RSDGVALVAPDHPQV--RAAVARLAAA--GVPVVTL 89 (275)
T ss_pred HHHHHHHh-cCCEEEEeCCCcHHH--HHHHHHHHHC--CCcEEEE
Confidence 56677777 999999998774321 1222444444 4566633
No 159
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=55.73 E-value=21 Score=38.62 Aligned_cols=64 Identities=17% Similarity=0.372 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhCCc---EEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHH
Q 009559 253 VSEIVDSMEERGIN---MLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEE 322 (532)
Q Consensus 253 ~~~ivd~L~~~gId---~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~ 322 (532)
.+++.+.+.+++.+ .++.|||-=.+..|..++-. -.| +++.|.||-| =+..+|.+.|--|+++.
T Consensus 85 v~~i~~~l~~~~~~r~~~IIalGGG~v~D~ag~vA~~-~~r--Gip~I~IPTT---lla~vDs~~g~k~~vn~ 151 (369)
T cd08198 85 VEALHAAINRHGIDRHSYVIAIGGGAVLDAVGYAAAT-AHR--GVRLIRIPTT---VLAQNDSGVGVKNGINA 151 (369)
T ss_pred HHHHHHHHHHcCCCcCcEEEEECChHHHHHHHHHHHH-hcC--CCCEEEECCC---chhhhCCCeeeeecccC
Confidence 56889999999998 99999999888888777653 334 4899999999 33566777777777765
No 160
>PRK05637 anthranilate synthase component II; Provisional
Probab=55.49 E-value=24 Score=34.85 Aligned_cols=52 Identities=13% Similarity=0.326 Sum_probs=37.2
Q ss_pred HHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHH
Q 009559 258 DSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEE 322 (532)
Q Consensus 258 d~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~ 322 (532)
+.+++.+.+++++-||-|+-..+....+.+++..-+++|.|| |+|++.-+..
T Consensus 38 ~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGI-------------ClG~Qlla~a 89 (208)
T PRK05637 38 EEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGI-------------CLGFQALLEH 89 (208)
T ss_pred HHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEE-------------cHHHHHHHHH
Confidence 445577999999999999998775544444332225788888 9999876554
No 161
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=55.43 E-value=2e+02 Score=27.78 Aligned_cols=86 Identities=13% Similarity=0.101 Sum_probs=52.5
Q ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccC-CccHHH
Q 009559 177 AAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRG-APTVSE 255 (532)
Q Consensus 177 iaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~-~~~~~~ 255 (532)
|||+.-.-.-|=.+.+++++...+..+|+. +.-+ .+.. .....+
T Consensus 2 igvi~p~~~~~~~~~~~~g~~~~a~~~g~~-~~~~----------------------------------~~~~~~~~~~~ 46 (268)
T cd06270 2 IGLVVSDLDGPFFGPLLSGVESVARKAGKH-LIIT----------------------------------AGHHSAEKERE 46 (268)
T ss_pred EEEEEccccCcchHHHHHHHHHHHHHCCCE-EEEE----------------------------------eCCCchHHHHH
Confidence 566665556777888899998888888873 3210 0011 112346
Q ss_pred HHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeeccc
Q 009559 256 IVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTI 303 (532)
Q Consensus 256 ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTI 303 (532)
+++.+...++|++++.+-+.+-.. + +.+.+. +++||.+-..+
T Consensus 47 ~i~~~~~~~vdgii~~~~~~~~~~---~-~~~~~~--~ipvV~~~~~~ 88 (268)
T cd06270 47 AIEFLLERRCDALILHSKALSDDE---L-IELAAQ--VPPLVLINRHI 88 (268)
T ss_pred HHHHHHHcCCCEEEEecCCCCHHH---H-HHHhhC--CCCEEEEeccC
Confidence 777888899999999986543221 2 333333 46677664433
No 162
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=55.22 E-value=80 Score=31.93 Aligned_cols=102 Identities=14% Similarity=0.109 Sum_probs=61.9
Q ss_pred chHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC---ccHHHHHHHHHHh
Q 009559 187 PGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA---PTVSEIVDSMEER 263 (532)
Q Consensus 187 PGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~---~~~~~ivd~L~~~ 263 (532)
|--+...+.++..+.+.|+++|.-+..... +- ..+-....+.+...|+.+.+..+.. .+....+..|++.
T Consensus 119 ~~~~~~~~~l~~~~~~~~~~~vail~~~~~--~g-----~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~ 191 (312)
T cd06346 119 PSDALQGQALAQLAAERGYKSVATTYINND--YG-----VGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAG 191 (312)
T ss_pred CCcHHHHHHHHHHHHHcCCCeEEEEEccCc--hh-----hHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhc
Confidence 333334566667776778877654432211 10 1112233445556788888766543 4778899999999
Q ss_pred CCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEee
Q 009559 264 GINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVG 298 (532)
Q Consensus 264 gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIG 298 (532)
+-|.+|+.+... .+..+.+.+++.|++..+++
T Consensus 192 ~pd~v~~~~~~~---~~~~~~~~~~~~G~~~~~~~ 223 (312)
T cd06346 192 GPDALVVIGYPE---TGSGILRSAYEQGLFDKFLL 223 (312)
T ss_pred CCCEEEEecccc---hHHHHHHHHHHcCCCCceEe
Confidence 999998876433 33445566677777655554
No 163
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=55.07 E-value=1.1e+02 Score=30.36 Aligned_cols=66 Identities=8% Similarity=-0.050 Sum_probs=47.0
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHH
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSE 255 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ 255 (532)
+||++...-.-|....++.++...+..+|+. ++-. + ++.......+
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~~~gy~-~~~~-~--------------------------------~~~~~~~~~~ 47 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAKAIGWN-LRIL-D--------------------------------GRGSEAGQAA 47 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHHHcCcE-EEEE-C--------------------------------CCCCHHHHHH
Confidence 5888887777889999999999988888873 3210 0 1111112346
Q ss_pred HHHHHHHhCCcEEEEeCChh
Q 009559 256 IVDSMEERGINMLFVLGGNG 275 (532)
Q Consensus 256 ivd~L~~~gId~L~vIGGdG 275 (532)
+++.+..+++|++++.+.+.
T Consensus 48 ~i~~l~~~~vdgiil~~~~~ 67 (280)
T cd06315 48 ALNQAIALKPDGIVLGGVDA 67 (280)
T ss_pred HHHHHHHcCCCEEEEcCCCH
Confidence 78889999999999998764
No 164
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=54.80 E-value=2.1e+02 Score=27.72 Aligned_cols=88 Identities=15% Similarity=0.147 Sum_probs=51.2
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHH
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSE 255 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ 255 (532)
||||+..-=.-|-...++.++...+..+|+. +.-+. + .+.+......+
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~-~~~~~----------------~---------------~~~~~~~~~~~ 48 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKELGVK-VTFQG----------------P---------------ASETDVAGQVN 48 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHcCCE-EEEec----------------C---------------ccCCCHHHHHH
Confidence 6788774434567777888888877777763 32000 0 00111223456
Q ss_pred HHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 256 IVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 256 ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
+++.+..+++|++++.+.+... ....| +.++++ ++++|.+
T Consensus 49 ~i~~l~~~~vdgvii~~~~~~~-~~~~l-~~~~~~--~ipvV~~ 88 (273)
T cd06310 49 LLENAIARGPDAILLAPTDAKA-LVPPL-KEAKDA--GIPVVLI 88 (273)
T ss_pred HHHHHHHhCCCEEEEcCCChhh-hHHHH-HHHHHC--CCCEEEe
Confidence 7888888999999999876431 11222 333443 4667665
No 165
>PRK05261 putative phosphoketolase; Provisional
Probab=54.75 E-value=2e+02 Score=34.35 Aligned_cols=64 Identities=28% Similarity=0.352 Sum_probs=42.2
Q ss_pred hhhhhcCCCcccccCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCce--EEEEccccccccc
Q 009559 157 QWVHRAGPREEIYFKPEEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKN--IVGIPFGYRGFCD 220 (532)
Q Consensus 157 ~~~~~agpr~~i~f~p~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~--V~Gi~~Gy~GL~~ 220 (532)
+.|.+.-|--+==..|+++|--.+==-|-|||+|-|-..+.+-..+|+.+. |.|-=+|-.+++.
T Consensus 26 ~iyl~~n~ll~~pl~~~~~K~r~~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a 91 (785)
T PRK05261 26 QIYLRDNPLLREPLKPEHVKPRLLGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVA 91 (785)
T ss_pred HHHHhcCcccCCCCCHHHCCcccCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHH
Confidence 344444444444456677777666566999999999777777667887754 3444467666665
No 166
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=54.70 E-value=30 Score=36.92 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=38.8
Q ss_pred HHHHHHHHHHh---CCcEEEEeCChhhHHHHHHHHHHHHhc-------------CCCceEeeeeccc
Q 009559 253 VSEIVDSMEER---GINMLFVLGGNGTHAGANAIHNECRKR-------------RMKVAVVGVPKTI 303 (532)
Q Consensus 253 ~~~ivd~L~~~---gId~L~vIGGdGT~~gA~~L~ee~~kr-------------~~~I~VIGIPKTI 303 (532)
++++++..++. ++|.++-|||--++..|..++-..... +-.+++|.||-|=
T Consensus 67 v~~~~~~~~~~~~~~~D~IIaiGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTa 133 (347)
T cd08184 67 IDALTAQVKSFDGKLPCAIVGIGGGSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLS 133 (347)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCC
Confidence 56778888888 999999999999999998887443211 1135799999874
No 167
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=54.64 E-value=2.1e+02 Score=27.62 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=42.8
Q ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC-ccHHH
Q 009559 177 AAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA-PTVSE 255 (532)
Q Consensus 177 iaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~-~~~~~ 255 (532)
|||+.-.=.-|=.+.++.++...+..+|+. ++-+ ++... ....+
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~gy~-~~~~----------------------------------~~~~~~~~~~~ 46 (265)
T cd06290 2 IGVLTQDFASPFYGRILKGMERGLNGSGYS-PIIA----------------------------------TGHWNQSRELE 46 (265)
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHHCCCE-EEEE----------------------------------eCCCCHHHHHH
Confidence 566665555567777888888877777773 3211 11111 12346
Q ss_pred HHHHHHHhCCcEEEEeCChhh
Q 009559 256 IVDSMEERGINMLFVLGGNGT 276 (532)
Q Consensus 256 ivd~L~~~gId~L~vIGGdGT 276 (532)
+++.+..+++|++++.+.+-+
T Consensus 47 ~i~~l~~~~~dgiii~~~~~~ 67 (265)
T cd06290 47 ALELLKSRRVDALILLGGDLP 67 (265)
T ss_pred HHHHHHHCCCCEEEEeCCCCC
Confidence 788899999999999987633
No 168
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=52.76 E-value=1e+02 Score=30.87 Aligned_cols=101 Identities=19% Similarity=0.289 Sum_probs=60.7
Q ss_pred CCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc----------cH
Q 009559 184 GLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP----------TV 253 (532)
Q Consensus 184 G~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~----------~~ 253 (532)
|.+-|+..+.. +.+...|...|.-+..|..-.+.. -+++..+.|...||-+| |-+.+ .+
T Consensus 80 G~A~GiD~~ah---~~al~~~g~tIaVl~~gld~~yp~------~n~~l~~~i~~~gglli--Se~p~~~~~~~~~f~~R 148 (220)
T TIGR00732 80 GLALGIDGIAH---KAALKVNGRTIAVLGTGLDQIYPR------QNSKLAAKIAENGGLLL--SEYPPDTKPIKYNFPKR 148 (220)
T ss_pred CchhhHHHHHH---HHHHHcCCCEEEEECCCCccCCch------hhHHHHHHHHHcCCEEE--EecCCCCCCCcccHHHH
Confidence 45668876433 333444544565556665544432 25667777877888776 23222 24
Q ss_pred HHHHHHHHHhCCcEEEEeCC---hhhHHHHHHHHHHHHhcCCCceEeeeeccccc
Q 009559 254 SEIVDSMEERGINMLFVLGG---NGTHAGANAIHNECRKRRMKVAVVGVPKTIDN 305 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGG---dGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDN 305 (532)
.+++..|- +++|+++. .||+.+|..-.+ ++..|.++|..|++
T Consensus 149 Nriia~ls----~~vivve~~~~sGtl~ta~~A~~------~gr~v~~~pg~~~~ 193 (220)
T TIGR00732 149 NRIISGLS----RAVLVVEAPLKSGALITARYALE------QGREVFAYPGDLNS 193 (220)
T ss_pred HHHHHHhc----CEEEEEECCCCCchHHHHHHHHH------hCCcEEEEcCCCCC
Confidence 45555553 77888886 577776654332 34689999999886
No 169
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=52.46 E-value=2.4e+02 Score=32.05 Aligned_cols=186 Identities=12% Similarity=0.175 Sum_probs=103.3
Q ss_pred HHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCC-cceecccCCccHHHHHHHHHHh---CCcEEE
Q 009559 194 RHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGG-SLLGVSRGAPTVSEIVDSMEER---GINMLF 269 (532)
Q Consensus 194 r~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GG-SiLGTSR~~~~~~~ivd~L~~~---gId~L~ 269 (532)
..+++.|..+|+++|||+.++.. ++ .++.+...+| .++ .+|......-+.+..-+. ++-.++
T Consensus 7 ~~l~~~L~~~GV~~vFGvpG~~~---------~~----l~dal~~~~~i~~V-~~rhE~~A~~mAdgyaR~t~g~~gv~~ 72 (588)
T TIGR01504 7 DAAVYVLEKEGITTAFGVPGAAI---------NP----FYSALKAHGGIRHI-LARHVEGASHMAEGYTRATAGNIGVCI 72 (588)
T ss_pred HHHHHHHHHcCCCEEEECCCCCc---------HH----HHHHHhhcCCCcEE-eeCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 46788889999999999876532 11 1222222222 334 345444444455555544 377788
Q ss_pred EeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhh---------------HHHHHHHHHHHHHHhh
Q 009559 270 VLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDT---------------AVEEAQRAINSAYIEA 334 (532)
Q Consensus 270 vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdT---------------Av~~a~~aI~~a~~eA 334 (532)
+..|=|......-|++... -+++||.|-........+.+.--.+|. ..+.+.+.|+.+...|
T Consensus 73 ~t~GpG~~N~~~gla~A~~---~~~Pvl~I~G~~~~~~~~~~~~q~~D~~~~~~~vtk~~~~v~~~~~i~~~i~~A~~~A 149 (588)
T TIGR01504 73 GTSGPAGTDMITGLYSASA---DSIPILCITGQAPRARLHKEDFQAVDIAAIAKPVSKMAVTVREAALVPRVLQQAFHLM 149 (588)
T ss_pred ECCCccHHHHHHHHHHHhh---cCCCEEEEecCCCccccCCCcccccCHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHH
Confidence 8889998888888876433 357888887777766533221001111 2355667788888788
Q ss_pred hhccccEEEEEecCCCccHHHHHHhHhcCCccEEEc--CCCC-CCCCChhHHHHHHHHHHhccCceEEEeecccc
Q 009559 335 HSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLI--PESP-FNLHGPNGVLRHLKYLIETKGSAVVCVAEGAG 406 (532)
Q Consensus 335 ~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LI--PE~p-f~leg~~~ll~~lk~~~~~kg~~VVVVAEGag 406 (532)
.+.+.|-..|++--- +..+ .++.... +..+ ........-++.+.+++.+-++-+|++.-|+.
T Consensus 150 ~~~~~GPV~l~iP~D----v~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~ 214 (588)
T TIGR01504 150 RSGRPGPVLIDLPFD----VQVA------EIEFDPDTYEPLPVYKPAATRAQIEKAVEMLNAAERPLIVAGGGVI 214 (588)
T ss_pred ccCCCCeEEEEeCcc----hhhc------ccCCcccccccccCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCcc
Confidence 776666666776421 1100 0110000 0000 01111134466666677766777888888774
No 170
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=52.37 E-value=2.5e+02 Score=27.86 Aligned_cols=86 Identities=14% Similarity=0.109 Sum_probs=49.7
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc-cHH
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP-TVS 254 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~-~~~ 254 (532)
|||++...-.-|-.+.+++++...+..+|+. +.- +.++...+ ...
T Consensus 1 ~i~~i~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~---------------------------------~~~~~~~~~~~~ 46 (294)
T cd06316 1 KAAIVMHTSGSDWSNAQVRGAKDEFAKLGIE-VVA---------------------------------TTDAQFDPAKQV 46 (294)
T ss_pred CeEEEecCCCChHHHHHHHHHHHHHHHcCCE-EEE---------------------------------ecCCCCCHHHHH
Confidence 5777776556677788888888888777763 320 00111111 123
Q ss_pred HHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 255 EIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
+.++.+...++|++++.+.+-.. ...+.+++.+++ |+||.+
T Consensus 47 ~~l~~~~~~~~dgiii~~~~~~~--~~~~i~~~~~~~--iPvV~~ 87 (294)
T cd06316 47 ADIETTISQKPDIIISIPVDPVS--TAAAYKKVAEAG--IKLVFM 87 (294)
T ss_pred HHHHHHHHhCCCEEEEcCCCchh--hhHHHHHHHHcC--CcEEEe
Confidence 55666777899999998755321 122224454444 566643
No 171
>PRK05670 anthranilate synthase component II; Provisional
Probab=52.31 E-value=24 Score=33.87 Aligned_cols=49 Identities=27% Similarity=0.302 Sum_probs=31.8
Q ss_pred HHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHH
Q 009559 260 MEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVE 321 (532)
Q Consensus 260 L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~ 321 (532)
+++++.|+|++.||.|+-..+....+.+++-..+++|.|| |+|++--..
T Consensus 39 ~~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGI-------------ClG~Qlla~ 87 (189)
T PRK05670 39 IEALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGV-------------CLGHQAIGE 87 (189)
T ss_pred HHhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEE-------------CHHHHHHHH
Confidence 3556799999999999876544333333322224677777 999876543
No 172
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=52.23 E-value=29 Score=37.05 Aligned_cols=51 Identities=18% Similarity=0.310 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHH----------h-------cCCCceEeeeecc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECR----------K-------RRMKVAVVGVPKT 302 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~----------k-------r~~~I~VIGIPKT 302 (532)
.++++++.+++.+.|.++-|||--.+..|..++-... . .+-.+++|.||-|
T Consensus 63 ~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 130 (374)
T cd08183 63 LVDAAVAEARNAGCDVVIAIGGGSVIDAGKAIAALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTT 130 (374)
T ss_pred HHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCC
Confidence 4567888899999999999999999999887764321 0 0125789999988
No 173
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=51.76 E-value=2.3e+02 Score=27.31 Aligned_cols=85 Identities=16% Similarity=0.143 Sum_probs=48.7
Q ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHH
Q 009559 177 AAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEI 256 (532)
Q Consensus 177 iaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~i 256 (532)
|||+...-.-|-...++.++...+..+|++ +.-+ .+......-.+.
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~-~~~~---------------------------------~~~~~~~~~~~~ 47 (270)
T cd06296 2 IGLVFPDLDSPWASEVLRGVEEAAAAAGYD-VVLS---------------------------------ESGRRTSPERQW 47 (270)
T ss_pred eEEEECCCCCccHHHHHHHHHHHHHHcCCe-EEEe---------------------------------cCCCchHHHHHH
Confidence 456654444566677777777777666662 3210 011111123467
Q ss_pred HHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeec
Q 009559 257 VDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPK 301 (532)
Q Consensus 257 vd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPK 301 (532)
++.|...++|++++...+.+-. . .+++.+ .+++||.+=.
T Consensus 48 i~~l~~~~~dgiii~~~~~~~~---~-~~~~~~--~~ipvV~i~~ 86 (270)
T cd06296 48 VERLSARRTDGVILVTPELTSA---Q-RAALRR--TGIPFVVVDP 86 (270)
T ss_pred HHHHHHcCCCEEEEecCCCChH---H-HHHHhc--CCCCEEEEec
Confidence 7888889999999988764322 2 234433 3577776533
No 174
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=51.62 E-value=2e+02 Score=31.26 Aligned_cols=155 Identities=18% Similarity=0.224 Sum_probs=84.4
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHH---HHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHHH
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAG---ANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSA 330 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~g---A~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~a 330 (532)
+.|.+..++++-+.++|+.+--+--- ...+.++++++ .+++||.|.- +...+.+++-||+.|++...+.+..
T Consensus 79 ~aI~~~~~~~~P~~I~V~ttC~~~iIGdDi~~v~~~~~~~-~~~pvi~v~t---~gf~g~~~~~G~~~a~~al~~~~~~- 153 (426)
T cd01972 79 DTIKEAYSRYKPKAIFVATSCATGIIGDDVESVVEELEDE-IGIPVVALHC---EGFKGKHWRSGFDAAFHGILRHLVP- 153 (426)
T ss_pred HHHHHHHHhCCCCEEEEECCChHHHhccCHHHHHHHHHHh-hCCCEEEEeC---CccCCccHhHHHHHHHHHHHHHhcC-
Confidence 33455566788999999885433322 12233333322 4677777752 2333334556777776655443221
Q ss_pred HHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCC-CCCChhHHHHHHHHHHhccCceEEEeecc-ccch
Q 009559 331 YIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPF-NLHGPNGVLRHLKYLIETKGSAVVCVAEG-AGQS 408 (532)
Q Consensus 331 ~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf-~leg~~~ll~~lk~~~~~kg~~VVVVAEG-ag~~ 408 (532)
. .. . ......+-||++.+. +.. ..+=++.|++.+++.|.-|+.+--| ..-+
T Consensus 154 --~-~~-~----------------------~~~~~~VNliG~~~~~~~~-~~~d~~ei~~lL~~~Gi~v~~~~~~~~~~~ 206 (426)
T cd01972 154 --P-QD-P----------------------TKQEDSVNIIGLWGGPERT-EQEDVDEFKRLLNELGLRVNAIIAGGCSVE 206 (426)
T ss_pred --C-CC-C----------------------CCCCCCEEEEccCCCcccc-ccccHHHHHHHHHHcCCeEEEEeCCCCCHH
Confidence 0 00 0 001123555666644 211 1234677899999999877666554 4422
Q ss_pred hhcccccccCCCCcccc-chHHHHHHHHHHHHHhcCcc
Q 009559 409 LIKKTNATDASGNIVLG-DVGVLIQQETKKYFKEIGVP 445 (532)
Q Consensus 409 l~~~~~~~DasGn~~l~-dIg~~L~~~I~~~f~~~g~~ 445 (532)
-+ ....+|.-|..+. ..|..+++.++++| |++
T Consensus 207 ei--~~~~~A~lniv~~~~~g~~~a~~Lee~~---GiP 239 (426)
T cd01972 207 EL--ERASEAAANVTLCLDLGYYLGAALEQRF---GVP 239 (426)
T ss_pred HH--HhcccCCEEEEEChhHHHHHHHHHHHHh---CCC
Confidence 22 1234666777776 46778888888775 665
No 175
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=51.27 E-value=1.6e+02 Score=26.78 Aligned_cols=69 Identities=16% Similarity=0.269 Sum_probs=47.3
Q ss_pred eEEEEcccccccccC-Cce------ee-cCCHHHHhhhhhcCCcceecccCCc--cHHHHHHHHHHhCCcEEEEeCChhh
Q 009559 207 NIVGIPFGYRGFCDK-ELT------EM-PLSRKVVQNIHLSGGSLLGVSRGAP--TVSEIVDSMEERGINMLFVLGGNGT 276 (532)
Q Consensus 207 ~V~Gi~~Gy~GL~~~-~~~------~i-~Lt~~~V~~i~~~GGSiLGTSR~~~--~~~~ivd~L~~~gId~L~vIGGdGT 276 (532)
-+++.-.|..=+++. ++. ++ .++++..+.+...|-.++-.. .+. |.+++++.+.+++.+-++++|+-|.
T Consensus 18 ~~i~aDgGa~~l~~~~g~~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p-~kD~TD~e~Al~~~~~~~~~~i~v~Ga~Gg 96 (123)
T PF04263_consen 18 FIIAADGGANRLYELFGIKPDLIIGDFDSISPEVLEFYKSKGVEIIHFP-EKDYTDLEKALEYAIEQGPDEIIVLGALGG 96 (123)
T ss_dssp EEEEETTHHHHHHHTTTT--SEEEC-SSSS-HHHHHHHHHCTTEEEEE--STTS-HHHHHHHHHHHTTTSEEEEES-SSS
T ss_pred EEEEEchHHHHHHHhcCCCCCEEEecCCCCChHHHHHHHhhccceeccc-ccccCHHHHHHHHHHHCCCCEEEEEecCCC
Confidence 366777777766655 431 12 267877777777766666665 332 6899999999999999999999774
No 176
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=51.25 E-value=34 Score=36.69 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhc-------------CCCceEeeeecc
Q 009559 253 VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKR-------------RMKVAVVGVPKT 302 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr-------------~~~I~VIGIPKT 302 (532)
..++++.+++.+.|.++-|||--.+..|..++-..... +-.+++|.||-|
T Consensus 68 v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt 130 (386)
T cd08191 68 LCDAASAAARAGPDVIIGLGGGSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTT 130 (386)
T ss_pred HHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCC
Confidence 44667778889999999999999999998887533211 125789999988
No 177
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=51.10 E-value=76 Score=32.34 Aligned_cols=103 Identities=9% Similarity=0.116 Sum_probs=64.6
Q ss_pred cchHHHHHHHHHHHH-HHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccC---CccHHHHHHHHH
Q 009559 186 CPGLNDVIRHIVITL-EIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRG---APTVSEIVDSME 261 (532)
Q Consensus 186 cPGlNavIr~iv~~l-~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~---~~~~~~ivd~L~ 261 (532)
+|....-.+.++.++ ...|+++|.-+...+. +-.. +.....+.+...|+.+.+..+. ..+.+..+..|+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~v~ii~~~~~--~g~~-----~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~ 187 (340)
T cd06349 115 STSQAIEAPLLADYAVKDLGFKKVAILSVNTD--WGRT-----SADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLR 187 (340)
T ss_pred cCCcHHHHHHHHHHHHHHcCCcEEEEEecCCh--HhHH-----HHHHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHH
Confidence 455555556677775 4567777655544332 1111 1222333445568888876653 347888999999
Q ss_pred HhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEee
Q 009559 262 ERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVG 298 (532)
Q Consensus 262 ~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIG 298 (532)
..+-|.+++.|..+ .+..+.+.+++.|+++++++
T Consensus 188 ~~~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~ 221 (340)
T cd06349 188 DANPDAIILISYYN---DGAPIARQARAVGLDIPVVA 221 (340)
T ss_pred hcCCCEEEEccccc---hHHHHHHHHHHcCCCCcEEc
Confidence 99999998877544 33456677777888777764
No 178
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=50.60 E-value=94 Score=35.30 Aligned_cols=106 Identities=23% Similarity=0.359 Sum_probs=69.6
Q ss_pred HHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCC-cceecccCCccHHHHHHH-HHHhCCcEEEEe
Q 009559 194 RHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGG-SLLGVSRGAPTVSEIVDS-MEERGINMLFVL 271 (532)
Q Consensus 194 r~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GG-SiLGTSR~~~~~~~ivd~-L~~~gId~L~vI 271 (532)
+-+.++|.+.|++.|+|+.+ ++ +-..++.|..-++ ...|++-... -.-++|- -+..||.++++-
T Consensus 8 ~YLf~RL~q~gvksvfgVPG--------DF-----NL~LLD~l~~~~~lrwvGn~NELN-aAYAADGYAR~~Gi~a~VtT 73 (561)
T KOG1184|consen 8 EYLFRRLVQAGVKTVFGVPG--------DF-----NLSLLDKLYAVPGLRWVGNCNELN-AAYAADGYARSKGIGACVTT 73 (561)
T ss_pred HHHHHHHHHcCCceeEECCC--------cc-----cHHHHHHhhhcCCceeecccchhh-hhhhhcchhhhcCceEEEEE
Confidence 34667788999999999654 43 2224556666666 3456655321 1111111 123699999999
Q ss_pred CChhhHHHHHHHH-HHHHhcCCC-ceEeeeecccccCCC-CCCccCC
Q 009559 272 GGNGTHAGANAIH-NECRKRRMK-VAVVGVPKTIDNDIL-LMDKTFG 315 (532)
Q Consensus 272 GGdGT~~gA~~L~-ee~~kr~~~-I~VIGIPKTIDNDI~-~tD~SfG 315 (532)
=|-|-+.+-+-|+ .+++ +++ |.|||+|-|=|++-. ...||+|
T Consensus 74 fgVGeLSAlNGIAGsYAE--~vpVihIVG~Pnt~~q~t~~LLHHTLG 118 (561)
T KOG1184|consen 74 FGVGELSALNGIAGAYAE--NVPVIHIVGVPNTNDQGTQRLLHHTLG 118 (561)
T ss_pred eccchhhhhcccchhhhh--cCCEEEEECCCCcccccccchheeecC
Confidence 9999888877777 3443 344 789999999888874 6678888
No 179
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=50.02 E-value=2.3e+02 Score=26.73 Aligned_cols=97 Identities=22% Similarity=0.303 Sum_probs=62.2
Q ss_pred HHHHHHHHHcCCceEEEEcccc-cccccCCceeecCCHHHHhhhhhcCC-cceecccCCccHHHHHHHHHH--hCCcEEE
Q 009559 194 RHIVITLEIYGVKNIVGIPFGY-RGFCDKELTEMPLSRKVVQNIHLSGG-SLLGVSRGAPTVSEIVDSMEE--RGINMLF 269 (532)
Q Consensus 194 r~iv~~l~~ygv~~V~Gi~~Gy-~GL~~~~~~~i~Lt~~~V~~i~~~GG-SiLGTSR~~~~~~~ivd~L~~--~gId~L~ 269 (532)
..+++.|..+|++.|||+.++. ..|+ +.++...| .++ .+|......-+.+..-+ .++-.++
T Consensus 4 ~~l~~~L~~~Gv~~vFgipG~~~~~l~--------------~al~~~~~i~~v-~~rhE~~A~~mA~gyar~tg~~~v~~ 68 (164)
T cd07039 4 DVIVETLENWGVKRVYGIPGDSINGLM--------------DALRREGKIEFI-QVRHEEAAAFAASAEAKLTGKLGVCL 68 (164)
T ss_pred HHHHHHHHHCCCCEEEEcCCCchHHHH--------------HHHhhcCCCeEE-EeCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 3577888899999999988762 2222 22222122 333 45554433333333322 4689999
Q ss_pred EeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCC
Q 009559 270 VLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDIL 308 (532)
Q Consensus 270 vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~ 308 (532)
+..|=|.......|++... -+++|+.|....+.+..
T Consensus 69 ~t~GpG~~n~~~~l~~A~~---~~~Pvl~I~g~~~~~~~ 104 (164)
T cd07039 69 GSSGPGAIHLLNGLYDAKR---DRAPVLAIAGQVPTDEL 104 (164)
T ss_pred ECCCCcHHHHHHHHHHHHh---cCCCEEEEecCCccccc
Confidence 9999999988888876543 36889999887776643
No 180
>PRK09492 treR trehalose repressor; Provisional
Probab=49.53 E-value=2.8e+02 Score=27.70 Aligned_cols=65 Identities=12% Similarity=0.136 Sum_probs=43.3
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHH
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVS 254 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~ 254 (532)
..||++...-.-|-.+.++.++...+..+|+. ++-+. +........
T Consensus 63 ~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~gy~-~~~~~---------------------------------~~~~~~~~~ 108 (315)
T PRK09492 63 KVVGIIVSRLDSLSENQAVRTMLPAFYEQGYD-PIIME---------------------------------SQFSPEKVN 108 (315)
T ss_pred CeEEEEecCCcCcccHHHHHHHHHHHHHcCCe-EEEEe---------------------------------cCCChHHHH
Confidence 36899887656677888899998888888763 32100 001111123
Q ss_pred HHHHHHHHhCCcEEEEeCC
Q 009559 255 EIVDSMEERGINMLFVLGG 273 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGG 273 (532)
+.++.|...++|++++.+-
T Consensus 109 ~~~~~l~~~~vdgiIi~~~ 127 (315)
T PRK09492 109 EHLGVLKRRNVDGVILFGF 127 (315)
T ss_pred HHHHHHHhcCCCEEEEeCC
Confidence 5677788899999999874
No 181
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=49.52 E-value=36 Score=36.39 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=39.9
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHh-------------cCCCceEeeeeccc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRK-------------RRMKVAVVGVPKTI 303 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~k-------------r~~~I~VIGIPKTI 303 (532)
..+++++.+++.+.|.++-|||--.+..|..++-.... ....+++|.||-|-
T Consensus 74 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTa 138 (382)
T cd08187 74 TVREGIELCKEEKVDFILAVGGGSVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLA 138 (382)
T ss_pred HHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCC
Confidence 45678888999999999999999999988877542211 02357899999875
No 182
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=49.38 E-value=1.7e+02 Score=28.41 Aligned_cols=42 Identities=5% Similarity=0.057 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeec
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPK 301 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPK 301 (532)
+++.+.+.+.++|++++.+.+.... .+ +++.+. +|+||.+-.
T Consensus 54 ~~~~~~l~~~~~dgiii~~~~~~~~---~~-~~~~~~--~ipvV~~~~ 95 (275)
T cd06295 54 DWLARYLASGRADGVILIGQHDQDP---LP-ERLAET--GLPFVVWGR 95 (275)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCChH---HH-HHHHhC--CCCEEEECC
Confidence 4566777788999999998765421 12 344443 467776643
No 183
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=49.28 E-value=38 Score=36.00 Aligned_cols=51 Identities=16% Similarity=0.332 Sum_probs=37.7
Q ss_pred cHHHHHHHHHHhC--CcEEEEeCChhhHHHHHHHHHHHHhc-----------------CCCceEeeeecc
Q 009559 252 TVSEIVDSMEERG--INMLFVLGGNGTHAGANAIHNECRKR-----------------RMKVAVVGVPKT 302 (532)
Q Consensus 252 ~~~~ivd~L~~~g--Id~L~vIGGdGT~~gA~~L~ee~~kr-----------------~~~I~VIGIPKT 302 (532)
..+++++.+++.+ .|.++-|||--.+..|..++-..... ...+++|.||-|
T Consensus 66 ~v~~~~~~~~~~~~~~D~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTT 135 (355)
T TIGR03405 66 QLDGLYARLWGDEGACDLVIALGGGSVIDTAKVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTT 135 (355)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCC
Confidence 3567788888877 99999999999999887775432111 124789999877
No 184
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=49.28 E-value=1.4e+02 Score=30.24 Aligned_cols=103 Identities=9% Similarity=0.076 Sum_probs=60.0
Q ss_pred chHHHHHHHHHHHHHHcC--CceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC---ccHHHHHHHHH
Q 009559 187 PGLNDVIRHIVITLEIYG--VKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA---PTVSEIVDSME 261 (532)
Q Consensus 187 PGlNavIr~iv~~l~~yg--v~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~---~~~~~ivd~L~ 261 (532)
|.-..-.+.++..+.+++ +++|.-+..-.. + ...+-....+.+...|+.+..+.+.. .+....+..|+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~------~-g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~ 193 (345)
T cd06338 121 PPASQYAKSLLEMLVALDPRPKKVAILYADDP------F-SQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAK 193 (345)
T ss_pred CchHHHHHHHHHHHHhcCCCCceEEEEecCCc------c-cHHHHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHH
Confidence 444455566666665555 666543322111 1 00111222234455677777655433 47788889999
Q ss_pred HhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 262 ERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 262 ~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
+.+.+.+|+.+... .+..+.+.+++.|++..+++.
T Consensus 194 ~~~~d~i~~~~~~~---~~~~~~~~~~~~g~~~~~~~~ 228 (345)
T cd06338 194 AAGPDAVVVAGHFP---DAVLLVRQMKELGYNPKALYM 228 (345)
T ss_pred hcCCCEEEECCcch---hHHHHHHHHHHcCCCCCEEEE
Confidence 99999998777655 234455677777887666654
No 185
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=49.22 E-value=20 Score=32.19 Aligned_cols=52 Identities=25% Similarity=0.429 Sum_probs=34.5
Q ss_pred CCcEEEEeCChhhHHHHHHHHHHHHhcCCC---ceEeeeecccccCCCCCCccCChhhHHH
Q 009559 264 GINMLFVLGGNGTHAGANAIHNECRKRRMK---VAVVGVPKTIDNDILLMDKTFGFDTAVE 321 (532)
Q Consensus 264 gId~L~vIGGdGT~~gA~~L~ee~~kr~~~---I~VIGIPKTIDNDI~~tD~SfGFdTAv~ 321 (532)
..+.++++|||||...+. +.+.+.... +++.-||.==-||+. +++|..+-..
T Consensus 49 ~~d~vvv~GGDGTi~~vv---n~l~~~~~~~~~~plgiiP~GTgNdfa---r~lgi~~~~~ 103 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVL---NALDKRELPLPEPPVAVLPLGTGNDLA---RSLGWGGGYD 103 (124)
T ss_pred cCCEEEEEccccHHHHHH---HHHHhcccccCCCcEEEeCCCChhHHH---HHcCCCCCcc
Confidence 467999999999997654 222222222 788889987799985 3455444333
No 186
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=48.82 E-value=1.6e+02 Score=29.19 Aligned_cols=84 Identities=12% Similarity=0.050 Sum_probs=50.2
Q ss_pred EEEEEeCCCC-cchHHHHHHHHHHHHHHcCCc-eEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccH
Q 009559 176 KAAIVTCGGL-CPGLNDVIRHIVITLEIYGVK-NIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTV 253 (532)
Q Consensus 176 kiaIvt~GG~-cPGlNavIr~iv~~l~~ygv~-~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~ 253 (532)
||+||+...+ ..|+...++.+++.|...|+. .++....+......... . ++............
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~-----~----------~~~~~~~~~~~~~~ 65 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGE-----Q----------EVVRVIVLDNPLDY 65 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCc-----c----------cceeeeecCCchhH
Confidence 6888887766 779999999999999887763 23333333222211110 0 11111111122345
Q ss_pred HHHHHHHHHhCCcEEEEeCCh
Q 009559 254 SEIVDSMEERGINMLFVLGGN 274 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGd 274 (532)
..+.+.+++.+.|.+++.-..
T Consensus 66 ~~~~~~~~~~~~dii~~~~~~ 86 (366)
T cd03822 66 RRAARAIRLSGPDVVVIQHEY 86 (366)
T ss_pred HHHHHHHhhcCCCEEEEeecc
Confidence 677788899999988886543
No 187
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=48.73 E-value=83 Score=32.06 Aligned_cols=98 Identities=18% Similarity=0.186 Sum_probs=51.8
Q ss_pred EeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhh--H------HHHHHHHHHHHHHhhhhc-ccc
Q 009559 270 VLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDT--A------VEEAQRAINSAYIEAHSA-YHG 340 (532)
Q Consensus 270 vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdT--A------v~~a~~aI~~a~~eA~S~-~~~ 340 (532)
.+|-++..+.|..+...|++ .++++||.+ +| |+||.- . .+.+++.+.++ .+++.. +.-
T Consensus 44 ~~g~~~~~k~A~~v~~~~d~-~f~~PIv~l----------vD-tpG~~~g~~aE~~G~~~a~A~l~~a~-a~a~~~~vP~ 110 (238)
T TIGR03134 44 EVGLDEALALAQAVLDVIEA-DDKRPIVVL----------VD-TPSQAYGRREELLGINQALAHLAKAL-ALARLAGHPV 110 (238)
T ss_pred cCChHHHHHHHHHHHHHHHh-cCCCCEEEE----------Ee-CCCCCCCHHHHHHHHHHHHHHHHHHH-HHhhcCCCCE
Confidence 46667888888877654432 366787766 33 566653 1 22233333332 334322 233
Q ss_pred EEEEEecCCC--ccHHHHHHhHhcCCccEEE-cCCCCCCCCChhHHHHHH
Q 009559 341 IGIVKLMGRS--SGYIAMHASLASGQIDICL-IPESPFNLHGPNGVLRHL 387 (532)
Q Consensus 341 V~vVevMGR~--sG~LA~~aaLAsg~ad~~L-IPE~pf~leg~~~ll~~l 387 (532)
|.|| .|+- .||||+ ++ + +|.+| .|.-.+..=++++....+
T Consensus 111 IsvI--~g~a~ggg~lam--g~--~-ad~v~Alp~A~i~vm~~e~aa~I~ 153 (238)
T TIGR03134 111 IGLI--YGKAISGAFLAH--GL--Q-ADRIIALPGAMVHVMDLESMARVT 153 (238)
T ss_pred EEEE--eCCccHHHHHHH--cc--C-cCeEEEcCCcEEEecCHHHHHHHH
Confidence 4444 2332 577777 22 2 56666 677666555555554444
No 188
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=48.46 E-value=28 Score=33.58 Aligned_cols=52 Identities=17% Similarity=0.179 Sum_probs=33.6
Q ss_pred HHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHH
Q 009559 258 DSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEE 322 (532)
Q Consensus 258 d~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~ 322 (532)
+.+++.+.|.|++-||.|+-..+..-.+.+++...+++|.|| |+|++--+..
T Consensus 37 ~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLGI-------------C~G~Qll~~~ 88 (188)
T TIGR00566 37 QEIEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPILGV-------------CLGHQAMGQA 88 (188)
T ss_pred HHHHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCCEEEE-------------CHHHHHHHHH
Confidence 445677899999999999875422111222221236788888 9998866443
No 189
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=48.26 E-value=1.4e+02 Score=30.79 Aligned_cols=97 Identities=12% Similarity=0.095 Sum_probs=58.1
Q ss_pred HHHHHHHHHHH-cCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccC---CccHHHHHHHHHHhCCcE
Q 009559 192 VIRHIVITLEI-YGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRG---APTVSEIVDSMEERGINM 267 (532)
Q Consensus 192 vIr~iv~~l~~-ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~---~~~~~~ivd~L~~~gId~ 267 (532)
..+.++..+.. .++++|.-+..... + -..+-....+.+...|+++..+.+. ..+....++.|++.+-+.
T Consensus 124 ~~~~~a~~~~~~~~~~~v~ii~~~~~------~-g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~s~~i~~i~~~~~d~ 196 (347)
T cd06335 124 QAPFLVDEAVKRGGFKKVALLLDNTG------W-GRSNRKDLTAALAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADA 196 (347)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeccCc------h-hhhHHHHHHHHHHHcCCeeEEEeeecCCCccHHHHHHHHHhCCCCE
Confidence 34456666544 44766654432210 0 0011222334455668887766554 347888999999999999
Q ss_pred EEEeCChhhHHHHHHHHHHHHhcCCCceEee
Q 009559 268 LFVLGGNGTHAGANAIHNECRKRRMKVAVVG 298 (532)
Q Consensus 268 L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIG 298 (532)
+++.+... .+..+.+.+++.++++++++
T Consensus 197 v~~~~~~~---~~~~~~~~~~~~g~~~~~~~ 224 (347)
T cd06335 197 IIIVGNGP---EGAQIANGMAKLGWKVPIIS 224 (347)
T ss_pred EEEEecCh---HHHHHHHHHHHcCCCCcEec
Confidence 99987443 33346677788888766665
No 190
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=47.95 E-value=1.1e+02 Score=31.37 Aligned_cols=103 Identities=8% Similarity=0.045 Sum_probs=62.3
Q ss_pred chHHHHHHHHHHHHHHcC-CceEEEEcccccccccCCceeecCCHHHHhhhhh--cCCcceecccCC----ccHHHHHHH
Q 009559 187 PGLNDVIRHIVITLEIYG-VKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHL--SGGSLLGVSRGA----PTVSEIVDS 259 (532)
Q Consensus 187 PGlNavIr~iv~~l~~yg-v~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~--~GGSiLGTSR~~----~~~~~ivd~ 259 (532)
|.-..-...++..+..++ +++|.-+..-+ .+ ...+.....+.+.. .|+++++..+.. .+...++..
T Consensus 124 ~~~~~~~~~l~~~~~~~~~~k~v~i~~~~~------~~-g~~~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~ 196 (342)
T cd06329 124 ANTDMKMEALASYIKKQPDGKKVYLINQDY------SW-GQDVAAAFKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAK 196 (342)
T ss_pred CChHHHHHHHHHHHHhcccCceEEEEeCCh------HH-HHHHHHHHHHHHHhhcCCcEEeceeccCCCCCCchHHHHHH
Confidence 333445555666665555 76664432111 01 01112233445555 788888775543 567788999
Q ss_pred HHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 260 MEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 260 L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
|++.+.|.+++++..+ .+..+.+.+++.|+..++++.
T Consensus 197 l~~~~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~~ 233 (342)
T cd06329 197 IKASGADTVITGNWGN---DLLLLVKQAADAGLKLPFYTP 233 (342)
T ss_pred HHHcCCCEEEEcccCc---hHHHHHHHHHHcCCCceEEec
Confidence 9999999999977443 234566778888887766644
No 191
>PRK10586 putative oxidoreductase; Provisional
Probab=47.90 E-value=29 Score=37.12 Aligned_cols=53 Identities=13% Similarity=0.233 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCC
Q 009559 253 VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMD 311 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD 311 (532)
.+++.+..+ .+.|.++-|||--++..|..++.. .++++|.||-|-.+|-..+-
T Consensus 76 v~~l~~~~~-~~~d~iiavGGGs~iD~aK~~a~~-----~~~p~i~vPT~a~t~s~~s~ 128 (362)
T PRK10586 76 VAQLAAASG-DDRQVVIGVGGGALLDTAKALARR-----LGLPFVAIPTIAATCAAWTP 128 (362)
T ss_pred HHHHHHHhc-cCCCEEEEecCcHHHHHHHHHHhh-----cCCCEEEEeCCccccccccC
Confidence 334544443 588999999999999999988853 46899999999888765443
No 192
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=47.84 E-value=34 Score=30.93 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=33.3
Q ss_pred HHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeee
Q 009559 255 EIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVP 300 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIP 300 (532)
.+++.+.+++++.++++.||+-+.-+. +.++++|..+-|++.+
T Consensus 90 d~~~~~~~~~~d~ivLvSgD~Df~~~i---~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 90 DALELAYKRRIDTIVLVSGDSDFVPLV---ERLRELGKRVIVVGFE 132 (149)
T ss_pred HHHHHhhhcCCCEEEEEECCccHHHHH---HHHHHcCCEEEEEccC
Confidence 456666777999999999999886654 4556678888888776
No 193
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=47.45 E-value=32 Score=36.19 Aligned_cols=44 Identities=11% Similarity=0.354 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecc
Q 009559 253 VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKT 302 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKT 302 (532)
.+++++.+++ +.|.++-|||--.+..|..++.. ..+++|.||-|
T Consensus 70 v~~~~~~~~~-~~d~IIaIGGGs~~D~aK~vA~~-----~~~p~i~IPTT 113 (348)
T cd08175 70 VGRVLKELER-DTDLIIAVGSGTINDITKYVSYK-----TGIPYISVPTA 113 (348)
T ss_pred HHHHHHHhhc-cCCEEEEECCcHHHHHHHHHHHh-----cCCCEEEecCc
Confidence 4566677776 99999999999999999888732 25789999999
No 194
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=47.39 E-value=1.6e+02 Score=28.24 Aligned_cols=104 Identities=21% Similarity=0.289 Sum_probs=58.9
Q ss_pred cchHHHHHHHHHHHHHHcC-CceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccC---CccHHHHHHHHH
Q 009559 186 CPGLNDVIRHIVITLEIYG-VKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRG---APTVSEIVDSME 261 (532)
Q Consensus 186 cPGlNavIr~iv~~l~~yg-v~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~---~~~~~~ivd~L~ 261 (532)
+|.-+...+.++..+...+ +++|.-+..... +. ........+.+...|+.+.+.... ..+....++.|+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~--~~-----~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~ 187 (298)
T cd06268 115 APSDAQQAAALADYLAEKGKVKKVAIIYDDYA--YG-----RGLAAAFREALKKLGGEVVAEETYPPGATDFSPLIAKLK 187 (298)
T ss_pred ccCcHHHHHHHHHHHHHhcCCCEEEEEEcCCc--hh-----HHHHHHHHHHHHHcCCEEEEEeccCCCCccHHHHHHHHH
Confidence 3455666777777776665 666654432211 10 011122223344556665554332 235777888888
Q ss_pred HhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 262 ERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 262 ~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
+.+.+.+++.+... .+..+.+.+++.++++++++.
T Consensus 188 ~~~~~~vi~~~~~~---~~~~~~~~~~~~g~~~~~~~~ 222 (298)
T cd06268 188 AAGPDAVFLAGYGG---DAALFLKQAREAGLKVPIVGG 222 (298)
T ss_pred hcCCCEEEEccccc---hHHHHHHHHHHcCCCCcEEec
Confidence 88889888876543 233445666777777777664
No 195
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=47.13 E-value=39 Score=36.23 Aligned_cols=208 Identities=17% Similarity=0.331 Sum_probs=114.4
Q ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCc-eeecCCHHHHhhhhhcCCcceecccCCc
Q 009559 173 EEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKEL-TEMPLSRKVVQNIHLSGGSLLGVSRGAP 251 (532)
Q Consensus 173 ~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~-~~i~Lt~~~V~~i~~~GGSiLGTSR~~~ 251 (532)
..+||.|+=||| |-|++|..+.+. ...|+ +.+.+.-..++|-.... ..+.+-.....++..-+--.+|-.=...
T Consensus 10 ~~~~I~VIGvGg---~G~n~v~~m~~~-~~~gv-e~ia~nTD~q~L~~~~a~~ki~iG~~~t~GlGaGa~P~vG~~aAee 84 (338)
T COG0206 10 LKARIKVIGVGG---AGGNAVNRMIEE-GVEGV-EFIAINTDAQALKSSKADRKILIGESITRGLGAGANPEVGRAAAEE 84 (338)
T ss_pred cCceEEEEEeCC---cchHHHHHHHHh-hhCce-EEEEeccCHHHHhccccCeEEEeccceeeccCCCCCcHHHHHHHHH
Confidence 457999999998 556655555543 23445 57888888888875431 1111111111111110001111111112
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChh--hHHH-HHHHHHHHHhcCC-CceEeeeecccccCCCCCCccCChh--hHHHHHHH
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNG--THAG-ANAIHNECRKRRM-KVAVVGVPKTIDNDILLMDKTFGFD--TAVEEAQR 325 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdG--T~~g-A~~L~ee~~kr~~-~I~VIGIPKTIDNDI~~tD~SfGFd--TAv~~a~~ 325 (532)
+.++|.+.|+ +.|++|++=|.| |-++ |-.|++.+++.+. -++|+..| |-|. .-.+.|.+
T Consensus 85 ~~~~I~~~l~--g~dmvfitaG~GGGTGtGaaPVvakiake~g~ltvavvt~P-------------f~~EG~~r~~~A~~ 149 (338)
T COG0206 85 SIEEIEEALK--GADMVFVTAGMGGGTGTGAAPVVAEIAKELGALTVAVVTLP-------------FSFEGSPRMENAEE 149 (338)
T ss_pred HHHHHHHHhc--cCCeEEEEeeecCCccccccHHHHHHHHhcCCcEEEEEEec-------------chhcCchHHHHHHH
Confidence 5677888886 778888874433 3333 4567777666442 24455444 4455 56677888
Q ss_pred HHHHHHHhhhhc--cccEEEEEecCCCccHHHHHHhH---hc---CCccEEEcCCCCCCCCChhHHHHHHHHHHhccCce
Q 009559 326 AINSAYIEAHSA--YHGIGIVKLMGRSSGYIAMHASL---AS---GQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSA 397 (532)
Q Consensus 326 aI~~a~~eA~S~--~~~V~vVevMGR~sG~LA~~aaL---As---g~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg~~ 397 (532)
-|..++..+-+. ...--++|......-+-|...+. +. +-.+++..| .-..++ ++.++..+++.|.+
T Consensus 150 gi~~L~~~~DtlIvi~Ndkll~~~~~~~~~~Af~~ad~vl~~~v~~i~e~I~~~-glinvD-----faDv~~vm~~~G~A 223 (338)
T COG0206 150 GIEELREVVDTLIVIPNDKLLKGKDKTPIAEAFNEADDVLGNAVKGITELITKP-GLVNVD-----FADVRTVMKGGGFA 223 (338)
T ss_pred HHHHHHHhCCcEEEEecHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHhccC-ceEeec-----HHHHHHHHhcCCce
Confidence 888887766552 11122567777444444443332 11 224555555 112222 46788888889999
Q ss_pred EEEeecccc
Q 009559 398 VVCVAEGAG 406 (532)
Q Consensus 398 VVVVAEGag 406 (532)
.+-+++..+
T Consensus 224 ~mG~g~~~~ 232 (338)
T COG0206 224 LMGIGRASG 232 (338)
T ss_pred eEEEeeccc
Confidence 999888875
No 196
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=46.71 E-value=40 Score=36.54 Aligned_cols=64 Identities=17% Similarity=0.356 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhCCc---EEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHH
Q 009559 253 VSEIVDSMEERGIN---MLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEE 322 (532)
Q Consensus 253 ~~~ivd~L~~~gId---~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~ 322 (532)
.+++.+.+.+.+.+ .++.|||-=++..|..++-. ..| +++.|.||-| =+..+|.+.|--++++.
T Consensus 97 v~~i~~~~~~~~~dr~d~IIaiGGGsv~D~ak~iA~~-~~r--gip~I~IPTT---lla~vda~~g~~~~v~~ 163 (389)
T PRK06203 97 VEALHAAINRHGIDRHSYVLAIGGGAVLDMVGYAAAT-AHR--GVRLIRIPTT---VLAQNDSGVGVKNGINA 163 (389)
T ss_pred HHHHHHHHHHcCCCCCceEEEeCCcHHHHHHHHHHHH-hcC--CCCEEEEcCC---CccccCCCccchhheec
Confidence 67888999999998 99999999999888777642 233 4789999999 23556666666555554
No 197
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=46.57 E-value=1.6e+02 Score=28.25 Aligned_cols=103 Identities=11% Similarity=0.189 Sum_probs=57.3
Q ss_pred chHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccC---CccHHHHHHHHHHh
Q 009559 187 PGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRG---APTVSEIVDSMEER 263 (532)
Q Consensus 187 PGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~---~~~~~~ivd~L~~~ 263 (532)
|.-......++..+..+|+++|.-+..-.. . . ...-....+.+...|..+...... ..+...+++.+++.
T Consensus 118 ~~~~~~~~~~~~~l~~~~~~~v~iv~~~~~--~-~----~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~ 190 (299)
T cd04509 118 PSDEQQAEALADYIKEYNWKKVAILYDDDS--Y-G----RGLLEAFKAAFKKKGGTVVGEEYYPLGTTDFTSLLQKLKAA 190 (299)
T ss_pred CCcHHHHHHHHHHHHHcCCcEEEEEecCch--H-H----HHHHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhc
Confidence 344456667777777778766543321111 0 0 001111223344556666554332 24677888888888
Q ss_pred CCcEEEEeCChhhHHHHHHHHHHHHhcCC--CceEeee
Q 009559 264 GINMLFVLGGNGTHAGANAIHNECRKRRM--KVAVVGV 299 (532)
Q Consensus 264 gId~L~vIGGdGT~~gA~~L~ee~~kr~~--~I~VIGI 299 (532)
+.+++++.+... .+..+.+.+++.++ ++.+++.
T Consensus 191 ~~~~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~i~~ 225 (299)
T cd04509 191 KPDVIVLCGSGE---DAATILKQAAEAGLTGGYPILGI 225 (299)
T ss_pred CCCEEEEcccch---HHHHHHHHHHHcCCCCCCcEEec
Confidence 889888876543 44455566777776 5666654
No 198
>PRK04011 peptide chain release factor 1; Provisional
Probab=46.55 E-value=1.2e+02 Score=33.37 Aligned_cols=107 Identities=18% Similarity=0.318 Sum_probs=54.5
Q ss_pred HHHHHHHHHH-------hCCcEEEEeCChhhHHHHH----HHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHH
Q 009559 253 VSEIVDSMEE-------RGINMLFVLGGNGTHAGAN----AIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVE 321 (532)
Q Consensus 253 ~~~ivd~L~~-------~gId~L~vIGGdGT~~gA~----~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~ 321 (532)
.+++.+.+.+ .+++.|++ ||.|-.+... .|.+++++ .|+.+.. +...+ --|+.-+++
T Consensus 198 ~k~Vae~~~~~f~~~~~~~v~~Ivl-aGpg~~K~~f~~~~~L~~~l~~-----~vv~~~~-----~s~~~-~~Gl~E~l~ 265 (411)
T PRK04011 198 YKRVGEKANEAFLPLLEGKLKGILI-GGPGPTKEEFLEGDYLHYELKK-----KILGLFD-----VSYTG-ESGLRELVD 265 (411)
T ss_pred HHHHHHHHHHHHhhhccccccEEEE-ECChhHHHHHhhhhhhhHHHHh-----heEEEEe-----cCCCC-ccCHHHHHH
Confidence 3455565543 36676655 7777554311 34444332 2443221 11111 225555555
Q ss_pred HHHHHHHHHHHhhh-hccccEEEEEecCCCc-----cHHHHHHhHhcCCccEEEcCCC
Q 009559 322 EAQRAINSAYIEAH-SAYHGIGIVKLMGRSS-----GYIAMHASLASGQIDICLIPES 373 (532)
Q Consensus 322 ~a~~aI~~a~~eA~-S~~~~V~vVevMGR~s-----G~LA~~aaLAsg~ad~~LIPE~ 373 (532)
.+.+.+.+....-. ..-.+ |.+.++++. |.=....||..|.++-.||.|.
T Consensus 266 ~~~~~L~~~k~~~e~~lle~--f~~~l~~d~g~avyG~~~V~~Ale~GAVetLLV~d~ 321 (411)
T PRK04011 266 KASDLLKEQELVKEKKLMEE--FFKELAKDGGLAVYGEEEVRKALEMGAVDTLLISED 321 (411)
T ss_pred HHHHHHHHhHHHHHHHHHHH--HHHHHhcCCCcEEEcHHHHHHHHHcCCceEEEEecc
Confidence 55555544332111 11111 234455544 6677788899999999999875
No 199
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=46.52 E-value=23 Score=40.07 Aligned_cols=64 Identities=19% Similarity=0.335 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhC---CcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHH
Q 009559 253 VSEIVDSMEERG---INMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEE 322 (532)
Q Consensus 253 ~~~ivd~L~~~g---Id~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~ 322 (532)
.+++++.+.+.+ .|.++.|||--++..|..++.... | ++++|.||-|+ ++.+|.|+|.-|+++.
T Consensus 255 v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA~~y~-r--Gi~~i~vPTTl---lA~vDss~ggkt~in~ 321 (542)
T PRK14021 255 ANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVAATWM-R--GIRYVNCPTSL---LAMVDASTGGKTGINT 321 (542)
T ss_pred HHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHHHHHH-c--CCCEEEeCChH---HhhhccccCCceEEEC
Confidence 456778888885 899999999999988888875322 2 58999999996 3455667776666543
No 200
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=46.22 E-value=3.1e+02 Score=29.74 Aligned_cols=151 Identities=18% Similarity=0.153 Sum_probs=75.3
Q ss_pred HHHHHHHh-CCcEEEEeCChhhHHHHH---HHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHHHH
Q 009559 256 IVDSMEER-GINMLFVLGGNGTHAGAN---AIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAY 331 (532)
Q Consensus 256 ivd~L~~~-gId~L~vIGGdGT~~gA~---~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~a~ 331 (532)
|.+..+++ +...++|++.--+.-... .+.++++++.-.++||.|+ -.+..+-.+.-||+.|++.+.+.+-..
T Consensus 79 I~~~~~~~p~p~~i~V~~tc~~~liGdDi~~v~~~~~~~~~~~~vi~v~---tpgf~g~~~~~G~~~a~~al~~~l~~~- 154 (415)
T cd01977 79 IIEAFKEFPDIKRMTVYTTCTTALIGDDIKAVAKEVMEELPDVDIFVCN---APGFAGPSQSKGHHVLNIAWINQKVGT- 154 (415)
T ss_pred HHHHHHhCCCCcEEEEECCCchhhhcCCHHHHHHHHHHhcCCCeEEEEe---CCCcCCcchhHHHHHHHHHHHHHhhCc-
Confidence 44455556 578899887544332222 2223333332127888886 222222223446666665554432211
Q ss_pred HhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccCceEE-Eeeccccchhh
Q 009559 332 IEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVV-CVAEGAGQSLI 410 (532)
Q Consensus 332 ~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg~~VV-VVAEGag~~l~ 410 (532)
.+..... .+.+|+ |++. ... +-++.|++.+++.|.-++ +...|..-+-+
T Consensus 155 ~~~~~~~-----------------------~~~VNl--iG~~--~~~---~d~~ei~~lL~~~Gl~v~~~~~~~~t~~ei 204 (415)
T cd01977 155 VEPEITS-----------------------DYTINY--IGDY--NIQ---GDTEVLQKYFERMGIQVLSTFTGNGTYDDL 204 (415)
T ss_pred CCcCcCC-----------------------CCcEEE--EccC--CCc---ccHHHHHHHHHHcCCeEEEEECCCCCHHHH
Confidence 0000000 011333 3432 222 234678888998888775 55656652222
Q ss_pred cccccccCCCCcccc-chHHHHHHHHHHHHHhcCcc
Q 009559 411 KKTNATDASGNIVLG-DVGVLIQQETKKYFKEIGVP 445 (532)
Q Consensus 411 ~~~~~~DasGn~~l~-dIg~~L~~~I~~~f~~~g~~ 445 (532)
.+ .-.+.-|..+. ..+..+++.++++| |++
T Consensus 205 ~~--~~~A~lnlv~~~~~~~~~A~~L~er~---GiP 235 (415)
T cd01977 205 RW--MHRAKLNVVNCARSAGYIANELKKRY---GIP 235 (415)
T ss_pred Hh--cccCCEEEEEchhHHHHHHHHHHHHh---CCC
Confidence 21 22344455543 45777888888776 765
No 201
>PRK05858 hypothetical protein; Provisional
Probab=46.13 E-value=4.7e+02 Score=29.28 Aligned_cols=136 Identities=17% Similarity=0.112 Sum_probs=80.9
Q ss_pred HHHHHHHHHcCCceEEEEccc-ccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHHHHHHHHh--CCcEEEE
Q 009559 194 RHIVITLEIYGVKNIVGIPFG-YRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEIVDSMEER--GINMLFV 270 (532)
Q Consensus 194 r~iv~~l~~ygv~~V~Gi~~G-y~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ivd~L~~~--gId~L~v 270 (532)
..+++.|..+|++.|||+.++ +.+|++. +...+=.++ .+|......-+.+..-+. +.-.+++
T Consensus 9 ~~l~~~L~~~GV~~vFg~pG~~~~~l~da--------------l~~~~i~~i-~~rhE~~A~~~AdGyar~tg~~gv~~~ 73 (542)
T PRK05858 9 RLAARRLKAHGVDTMFTLSGGHLFPLYDG--------------AREEGIRLI-DVRHEQTAAFAAEAWAKLTRVPGVAVL 73 (542)
T ss_pred HHHHHHHHHcCCCEEEeCCCcchHHHHHH--------------HHhcCCCEE-eeccHHHHHHHHHHHHHhcCCCeEEEE
Confidence 567888899999999998887 3333321 111122233 345444444444444443 5678888
Q ss_pred eCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCC------CCccCChh---------hHHHHHHHHHHHHHHhhh
Q 009559 271 LGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILL------MDKTFGFD---------TAVEEAQRAINSAYIEAH 335 (532)
Q Consensus 271 IGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~------tD~SfGFd---------TAv~~a~~aI~~a~~eA~ 335 (532)
-.|=|.......|++... -+++||.|..+...+..+ +|..==|. +..+.+.+.++.+...|.
T Consensus 74 t~GpG~~n~~~~i~~A~~---~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~ 150 (542)
T PRK05858 74 TAGPGVTNGMSAMAAAQF---NQSPLVVLGGRAPALRWGMGSLQEIDHVPFVAPVTKFAATAQSAENAGRLVDQALQAAV 150 (542)
T ss_pred cCCchHHHHHHHHHHHHh---cCCCEEEEeCCCCcccCCCCCCcccchhhhhhhhhceEEEeCCHHHHHHHHHHHHHHHc
Confidence 889999988888886433 257788877655544321 12110011 124556677788877787
Q ss_pred hccccEEEEEec
Q 009559 336 SAYHGIGIVKLM 347 (532)
Q Consensus 336 S~~~~V~vVevM 347 (532)
+.+.|-..+++-
T Consensus 151 ~~~~GPV~l~iP 162 (542)
T PRK05858 151 TPHRGPVFVDFP 162 (542)
T ss_pred CCCCCeEEEEcC
Confidence 665565566664
No 202
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=46.00 E-value=32 Score=36.57 Aligned_cols=64 Identities=25% Similarity=0.359 Sum_probs=47.9
Q ss_pred cHHHHHHHHHHhC---CcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHH
Q 009559 252 TVSEIVDSMEERG---INMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVE 321 (532)
Q Consensus 252 ~~~~ivd~L~~~g---Id~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~ 321 (532)
..+++++.+.+++ .|.++.|||--.+..|..++... .| .+++|.||-|. +..+|.+.|.-++++
T Consensus 68 ~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~-~r--gip~i~VPTTl---la~~ds~~g~k~~i~ 134 (344)
T cd08169 68 TVTRILERAIALGANRRTAIVAVGGGATGDVAGFVASTL-FR--GIAFIRVPTTL---LAQSDSGVGGKTGIN 134 (344)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHh-cc--CCcEEEecCCc---ccccccCccceEeEe
Confidence 3567888888877 89999999999998888777533 23 47899999993 244566677666655
No 203
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=45.93 E-value=1.1e+02 Score=30.68 Aligned_cols=104 Identities=13% Similarity=0.062 Sum_probs=58.2
Q ss_pred chHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC---ccHHHHHHHHHHh
Q 009559 187 PGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA---PTVSEIVDSMEER 263 (532)
Q Consensus 187 PGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~---~~~~~ivd~L~~~ 263 (532)
|.-....+.++..+...|+++|.-+ .+-.. +.. ..-....+.+...|.++....+.. .+....+..+++.
T Consensus 115 ~~~~~~~~~~~~~l~~~g~~~vail-~~~~~-~~~-----~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~ 187 (312)
T cd06333 115 QNDRLMAEAILADMKKRGVKTVAFI-GFSDA-YGE-----SGLKELKALAPKYGIEVVADERYGRTDTSVTAQLLKIRAA 187 (312)
T ss_pred CCcHHHHHHHHHHHHHcCCCEEEEE-ecCcH-HHH-----HHHHHHHHHHHHcCCEEEEEEeeCCCCcCHHHHHHHHHhC
Confidence 4444456666777777788766433 22111 100 011122344555666666544432 3455666667677
Q ss_pred CCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeee
Q 009559 264 GINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVP 300 (532)
Q Consensus 264 gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIP 300 (532)
+.+++|+.+.+.. +..+.+.+++.|+++++++..
T Consensus 188 ~pdaIi~~~~~~~---~~~~~~~l~~~g~~~p~~~~~ 221 (312)
T cd06333 188 RPDAVLIWGSGTP---AALPAKNLRERGYKGPIYQTH 221 (312)
T ss_pred CCCEEEEecCCcH---HHHHHHHHHHcCCCCCEEeec
Confidence 8999888764432 233556677788888888743
No 204
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=45.56 E-value=55 Score=34.21 Aligned_cols=53 Identities=11% Similarity=0.106 Sum_probs=42.1
Q ss_pred ccHHHHHHHHHHh-CCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCC
Q 009559 251 PTVSEIVDSMEER-GINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDIL 308 (532)
Q Consensus 251 ~~~~~ivd~L~~~-gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~ 308 (532)
+..+++.+.+++. +.|.++-|||--.++.|..++. . .++++|.||-|.-+|-.
T Consensus 61 ~~~~~i~~~~~~~~~~d~iIaiGGGsv~D~aK~vA~---~--~~~p~i~vPTt~~tgs~ 114 (331)
T cd08174 61 SDAEEIGARARSIPNVDAVVGIGGGKVIDVAKYAAF---L--RGIPLSVPTTNLNDDGI 114 (331)
T ss_pred cCHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHh---h--cCCCEEEecCccccCcc
Confidence 4567777777777 5999999999999999888875 2 35789999999877543
No 205
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=45.50 E-value=34 Score=36.17 Aligned_cols=179 Identities=18% Similarity=0.236 Sum_probs=87.7
Q ss_pred ccCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceeccc
Q 009559 169 YFKPEEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSR 248 (532)
Q Consensus 169 ~f~p~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR 248 (532)
-+.|+.+=+||-..||.-| ...+..+..+.++|.+ |+ +|+.=++++ +++.++ ....-|.-|-=-|
T Consensus 30 ~~~~~~liiGiA~~GG~lp---~~w~~~i~~Ai~~Gl~-Iv---sGLH~~L~d-------dpel~~-~A~~~g~~i~DvR 94 (301)
T PF07755_consen 30 AAGADTLIIGIAPAGGRLP---PSWRPVILEAIEAGLD-IV---SGLHDFLSD-------DPELAA-AAKKNGVRIIDVR 94 (301)
T ss_dssp HCT-SEEEE---STTHCCH---CCHHHHHHHHHHTT-E-EE---E-SSS-HCC-------HHHHHC-CHHCCT--EEETT
T ss_pred hcCCCEEEEecCcCCCcCC---HHHHHHHHHHHHcCCC-EE---ecChhhhcc-------CHHHHH-HHHHcCCeEeecc
Confidence 3566778899999999988 6677777777889984 43 232223332 133333 3333343333334
Q ss_pred CCccHHHHH-HHHHHhCCcEEEEeCCh---hhHHHHHHHHHHHHhcCCCceEeeeecc----cccCCCCCCccCChhhHH
Q 009559 249 GAPTVSEIV-DSMEERGINMLFVLGGN---GTHAGANAIHNECRKRRMKVAVVGVPKT----IDNDILLMDKTFGFDTAV 320 (532)
Q Consensus 249 ~~~~~~~iv-d~L~~~gId~L~vIGGd---GT~~gA~~L~ee~~kr~~~I~VIGIPKT----IDNDI~~tD~SfGFdTAv 320 (532)
..+....+. -...+.+-.-+.++|=| |-|.++..|.++++++|++..+++==-| .+..++ +| ++-.|
T Consensus 95 ~p~~~~~~~~g~~~~~~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQTGimia~~Gv~-iD-av~~D--- 169 (301)
T PF07755_consen 95 KPPKDLPVASGRIREVKAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQTGIMIAGYGVP-ID-AVPSD--- 169 (301)
T ss_dssp S--SS-----SGGGG-SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SHHHHHCHSEC---GG-GSBGG---
T ss_pred CCCcccccccCccccCCCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCCceEEEecCCee-cc-chhhh---
Confidence 332211221 12234477788889988 5679999999999999988888753222 111111 12 22222
Q ss_pred HHHHHHHHHHHHhhhhccccEEEEEecCC--CccHHHHHHh-HhcCCccEEE
Q 009559 321 EEAQRAINSAYIEAHSAYHGIGIVKLMGR--SSGYIAMHAS-LASGQIDICL 369 (532)
Q Consensus 321 ~~a~~aI~~a~~eA~S~~~~V~vVevMGR--~sG~LA~~aa-LAsg~ad~~L 369 (532)
+++-++..+-.++.. .+.|-|||=.|- |.+|-....+ |....+|.++
T Consensus 170 -FvaGavE~~v~~~~~-~~d~ivVEGQgsL~hPay~gvsl~lL~Gs~Pd~lV 219 (301)
T PF07755_consen 170 -FVAGAVEALVPEAAE-EHDWIVVEGQGSLSHPAYSGVSLGLLHGSQPDALV 219 (301)
T ss_dssp -GHHHHHHHHHHHHCC-C-SEEEEE--S-TTSTTTHHCHHHHHHHH--SEEE
T ss_pred -hHHHHHHHHHHhhCc-CCCEEEEeccccccCccccccchhhhccCCCCeEE
Confidence 345566666666654 457999998885 3344442222 2222366443
No 206
>PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C ....
Probab=45.26 E-value=10 Score=38.97 Aligned_cols=65 Identities=26% Similarity=0.421 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHhCCc---EEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHH
Q 009559 252 TVSEIVDSMEERGIN---MLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEE 322 (532)
Q Consensus 252 ~~~~ivd~L~~~gId---~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~ 322 (532)
..+++++.|.+++++ .|+.|||--...-+--.+... .| +|+.|.||-|+ +..+|.|+|--||+|.
T Consensus 14 ~~~~i~~~l~~~~~~R~~~iiaiGGGvv~Dl~GFaAs~y-~R--Gi~~i~vPTTL---La~vDssiGgK~~vN~ 81 (260)
T PF01761_consen 14 TVEKIYDALLEAGLDRDDLIIAIGGGVVGDLAGFAASTY-MR--GIPFIQVPTTL---LAQVDSSIGGKTGVNF 81 (260)
T ss_dssp HHHHHHHHHHHTT--TTEEEEEEESHHHHHHHHHHHHHB-TT----EEEEEE-SH---HHHHTTTSSSEEEEEE
T ss_pred HHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHH-cc--CCceEeccccH---HHHHhcccCCCeeeeC
Confidence 468899999999995 999999988777666555432 23 58999999998 4567889998888764
No 207
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=45.09 E-value=2.4e+02 Score=25.60 Aligned_cols=95 Identities=17% Similarity=0.255 Sum_probs=55.8
Q ss_pred HHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHHHHHHHH--hCCcEEEEeC
Q 009559 195 HIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEIVDSMEE--RGINMLFVLG 272 (532)
Q Consensus 195 ~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ivd~L~~--~gId~L~vIG 272 (532)
.+++.|.+.|++.++|+.+.. ....++.+...+-..+.+ |.....--+.+..-+ .++-.+++-.
T Consensus 2 ~i~~~L~~~Gv~~vfg~pg~~-------------~~~l~~~~~~~~~~~i~~-~~E~~A~~~A~g~~~~~~~~~v~~~~~ 67 (155)
T cd07035 2 ALVEALKAEGVDHVFGVPGGA-------------ILPLLDALARSGIRYILV-RHEQGAVGMADGYARATGKPGVVLVTS 67 (155)
T ss_pred HHHHHHHHcCCCEEEECCCCc-------------hHHHHHHhccCCCEEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 467778899999999987621 111222222233344433 333322233333333 3477888888
Q ss_pred ChhhHHHHHHHHHHHHhcCCCceEeeeecccccC
Q 009559 273 GNGTHAGANAIHNECRKRRMKVAVVGVPKTIDND 306 (532)
Q Consensus 273 GdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDND 306 (532)
|-|.......|++.... +++++.|...-+.+
T Consensus 68 gpG~~n~~~~l~~A~~~---~~Pll~i~~~~~~~ 98 (155)
T cd07035 68 GPGLTNAVTGLANAYLD---SIPLLVITGQRPTA 98 (155)
T ss_pred CCcHHHHHHHHHHHHhh---CCCEEEEeCCCccc
Confidence 99999888888875443 57777776555433
No 208
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=44.94 E-value=2.5e+02 Score=25.86 Aligned_cols=83 Identities=10% Similarity=0.107 Sum_probs=47.5
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccC---CCCCCccCChhhHHHHHHHHHH
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDND---ILLMDKTFGFDTAVEEAQRAIN 328 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDND---I~~tD~SfGFdTAv~~a~~aI~ 328 (532)
+..++++.+...++++++..+.+.+... +.+.+.+. ++++|.+=.+.+.. -......+.+..+.+.+.+.+.
T Consensus 46 ~~~~~~~~~~~~~~d~ii~~~~~~~~~~---~~~~~~~~--~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 120 (269)
T cd01391 46 RALEALRDLIQQGVDGIIGPPSSSSALA---VVELAAAA--GIPVVSLDATAPDLTGYPYVFRVGPDNEQAGEAAAEYLA 120 (269)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCHHHHH---HHHHHHHc--CCcEEEecCCCCccCCCceEEEEcCCcHHHHHHHHHHHH
Confidence 4556777777889999999888766543 33444443 57777764444321 1122234444555555555554
Q ss_pred HHHHhhhhccccEEEEE
Q 009559 329 SAYIEAHSAYHGIGIVK 345 (532)
Q Consensus 329 ~a~~eA~S~~~~V~vVe 345 (532)
... +++|+++=
T Consensus 121 ~~~------~~~i~~i~ 131 (269)
T cd01391 121 EKG------WKRVALIY 131 (269)
T ss_pred HhC------CceEEEEe
Confidence 431 45677663
No 209
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=44.71 E-value=1.3e+02 Score=30.22 Aligned_cols=94 Identities=16% Similarity=0.268 Sum_probs=54.5
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccc------cccccCCceeecCCH--HHHhhhhhcCCcceec
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGY------RGFCDKELTEMPLSR--KVVQNIHLSGGSLLGV 246 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy------~GL~~~~~~~i~Lt~--~~V~~i~~~GGSiLGT 246 (532)
|||||+-.-|-+- ..|...+.+.|+ +|.+|-.-- +|+.--+-+..+++. +.+.+.- -++-+
T Consensus 1 mKIaiIgAsG~~G------s~i~~EA~~RGH-eVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~D----aVIsA 69 (211)
T COG2910 1 MKIAIIGASGKAG------SRILKEALKRGH-EVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHD----AVISA 69 (211)
T ss_pred CeEEEEecCchhH------HHHHHHHHhCCC-eeEEEEeChHhccccccceeecccccChhhhHhhhcCCc----eEEEe
Confidence 6899998777543 457788888998 577775332 333211111123333 3333211 11111
Q ss_pred ccCC-c--------cHHHHHHHHHHhCCcEEEEeCChhhHHH
Q 009559 247 SRGA-P--------TVSEIVDSMEERGINMLFVLGGNGTHAG 279 (532)
Q Consensus 247 SR~~-~--------~~~~ivd~L~~~gId~L~vIGGdGT~~g 279 (532)
=+.. + ..+.+++.|+.-+..-|+|+||-||+.-
T Consensus 70 ~~~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAGSL~i 111 (211)
T COG2910 70 FGAGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAGSLEI 111 (211)
T ss_pred ccCCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCccceEE
Confidence 1111 1 2355889999999999999999999753
No 210
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=44.31 E-value=4.4e+02 Score=29.17 Aligned_cols=147 Identities=20% Similarity=0.203 Sum_probs=77.9
Q ss_pred HHHHHHHh-CCcEEEEeCC-------hhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHH
Q 009559 256 IVDSMEER-GINMLFVLGG-------NGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAI 327 (532)
Q Consensus 256 ivd~L~~~-gId~L~vIGG-------dGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI 327 (532)
|.+..+++ ....++|+++ |+-..-+..+ +++.-+++||.|+ -.+..+..++-||+.|++...+.+
T Consensus 116 I~e~~~~~p~p~~I~V~stC~~~lIGDDi~~v~~e~----~~~~~~~pvv~v~---t~gf~g~s~~~G~~~a~~al~~~l 188 (457)
T TIGR01284 116 ILEAFREFPEIKRMYTYATCTTALIGDDIDAIAREV----MEEIPDVDVFAIN---APGFAGPSQSKGHHVANITWINDK 188 (457)
T ss_pred HHHHHHhCCCCceEEEECCChHHhhccCHHHHHHHH----HHhcCCCeEEEee---CCCcCCcccchHHHHHHHHHHHHH
Confidence 44555666 5888999884 5544433333 3332137888885 233344345567777776544322
Q ss_pred HHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccCceEE-Eeecccc
Q 009559 328 NSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVV-CVAEGAG 406 (532)
Q Consensus 328 ~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg~~VV-VVAEGag 406 (532)
-. ... +. . ...-.+-||++. ... +-++.|++.+++.|.-++ +...+..
T Consensus 189 ~~---~~~--~~-----------~----------~~~~~VNiiG~~--~~~---gd~~el~~lL~~~Gl~v~~~~~g~~s 237 (457)
T TIGR01284 189 VG---TAE--PE-----------I----------TTEYDVNLIGEY--NIQ---GDLWVLKKYFERMGIQVLSTFTGNGC 237 (457)
T ss_pred hC---ccC--cc-----------c----------CCCCeEEEEccC--Cch---hhHHHHHHHHHHcCCeEEEEECCCCC
Confidence 11 000 00 0 001123445653 332 346788999999998776 5555553
Q ss_pred chhhcccccccCCCCcccc-chHHHHHHHHHHHHHhcCcc
Q 009559 407 QSLIKKTNATDASGNIVLG-DVGVLIQQETKKYFKEIGVP 445 (532)
Q Consensus 407 ~~l~~~~~~~DasGn~~l~-dIg~~L~~~I~~~f~~~g~~ 445 (532)
-+-+. ....|.-|..+. ..+..+++.++++| |++
T Consensus 238 ~~ei~--~~~~A~lniv~~~~~~~~~A~~Le~~~---GiP 272 (457)
T TIGR01284 238 YDELR--WMHRAKLNVVRCARSANYIANELEERY---GIP 272 (457)
T ss_pred HHHHH--hccccCEEEEEChHHHHHHHHHHHHHh---CCC
Confidence 22221 123445555543 34667788887775 665
No 211
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=44.28 E-value=2.9e+02 Score=26.39 Aligned_cols=85 Identities=11% Similarity=0.121 Sum_probs=49.9
Q ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHH
Q 009559 177 AAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEI 256 (532)
Q Consensus 177 iaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~i 256 (532)
||+|..--.-|-.+.+++++-..+..+|+ ++.- .. +.....+..+.
T Consensus 2 I~vv~~~~~~~~~~~~~~~i~~~~~~~g~-~v~~--------~~-------------------------~~~~~~~~~~~ 47 (268)
T cd06323 2 IGLSVSTLNNPFFVTLKDGAQKEAKELGY-ELTV--------LD-------------------------AQNDAAKQLND 47 (268)
T ss_pred eeEecccccCHHHHHHHHHHHHHHHHcCc-eEEe--------cC-------------------------CCCCHHHHHHH
Confidence 57777666788889999999888887776 3320 00 00011122356
Q ss_pred HHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 257 VDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 257 vd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
++.+...+++++++.+-+.. .....| ++++++ ++++|.+
T Consensus 48 ~~~~~~~~~dgii~~~~~~~-~~~~~l-~~l~~~--~ipvv~~ 86 (268)
T cd06323 48 IEDLITRGVDAIIINPTDSD-AVVPAV-KAANEA--GIPVFTI 86 (268)
T ss_pred HHHHHHcCCCEEEEcCCChH-HHHHHH-HHHHHC--CCcEEEE
Confidence 67777889999998654322 111223 333333 5677766
No 212
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=44.27 E-value=69 Score=32.44 Aligned_cols=101 Identities=22% Similarity=0.323 Sum_probs=66.3
Q ss_pred cccccCCCCCCccCChhhHHHHHHHHHHHHH-HhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCC-
Q 009559 301 KTIDNDILLMDKTFGFDTAVEEAQRAINSAY-IEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLH- 378 (532)
Q Consensus 301 KTIDNDI~~tD~SfGFdTAv~~a~~aI~~a~-~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~le- 378 (532)
-|+.-|+.+-....|..-+ + +.+.+..+- .-........-.-++-|..-=-+|.+++||.+ +++++.=|----+|
T Consensus 95 ~tV~~evafg~~n~g~~~~-e-~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~-P~iliLDEPta~LD~ 171 (235)
T COG1122 95 PTVEDEVAFGLENLGLPRE-E-IEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMG-PEILLLDEPTAGLDP 171 (235)
T ss_pred CcHHHHHhhchhhcCCCHH-H-HHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcC-CCEEEEcCCCCCCCH
Confidence 5788888888888888876 2 333333221 11211112234678999999999999999997 99999877544454
Q ss_pred -ChhHHHHHHHHHHhccCceEEEeecc
Q 009559 379 -GPNGVLRHLKYLIETKGSAVVCVAEG 404 (532)
Q Consensus 379 -g~~~ll~~lk~~~~~kg~~VVVVAEG 404 (532)
+.+.+++.+++.-++.|..+|++.--
T Consensus 172 ~~~~~l~~~l~~L~~~~~~tii~~tHd 198 (235)
T COG1122 172 KGRRELLELLKKLKEEGGKTIIIVTHD 198 (235)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEeCc
Confidence 33456666666656667777777643
No 213
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=44.15 E-value=1.5e+02 Score=30.73 Aligned_cols=102 Identities=11% Similarity=0.077 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHcC-CceEEEEc--ccccccccCCceeecCCHHHHhhhhhcCCcceecccCC---ccHHHHHHHHHH
Q 009559 189 LNDVIRHIVITLEIYG-VKNIVGIP--FGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA---PTVSEIVDSMEE 262 (532)
Q Consensus 189 lNavIr~iv~~l~~yg-v~~V~Gi~--~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~---~~~~~ivd~L~~ 262 (532)
-+.+.+.++..+...+ .++|.-+. +.|--.+...+ ....+.+...|+.+.+..+.. .|....+..|++
T Consensus 128 ~~~~~~~~~~~~~~~~~~k~v~ii~~~~~~g~~~~~~~------~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~ik~ 201 (357)
T cd06337 128 AEDVVATYVGMWKQLETNKKVGILYPNDPDGNAFADPV------IGLPAALADAGYKLVDPGRFEPGTDDFSSQINAFKR 201 (357)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEeecCchhHHHHHhh------hcccHHHHhCCcEEecccccCCCCCcHHHHHHHHHh
Confidence 4567777777665555 66654432 23310111111 111234455788888777654 478889999999
Q ss_pred hCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 263 RGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 263 ~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
-+-|.+|+++ .+. .+..+.+.+++.|++..++++
T Consensus 202 a~pD~v~~~~-~~~--~~~~~~~~~~~~G~~~~~~~~ 235 (357)
T cd06337 202 EGVDIVTGFA-IPP--DFATFWRQAAQAGFKPKIVTI 235 (357)
T ss_pred cCCCEEEeCC-Ccc--HHHHHHHHHHHCCCCCCeEEE
Confidence 9999987554 443 234466777888888777754
No 214
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=44.11 E-value=3e+02 Score=26.43 Aligned_cols=40 Identities=13% Similarity=0.253 Sum_probs=23.7
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
+.+.+.+.+.++|++++...+..- .+.+++.++ +|+||.+
T Consensus 50 ~~~~~~~~~~~~dgiii~~~~~~~----~~~~~~~~~--~ipvV~~ 89 (270)
T cd06294 50 EEVKKMIQQKRVDGFILLYSREDD----PIIDYLKEE--KFPFVVI 89 (270)
T ss_pred HHHHHHHHHcCcCEEEEecCcCCc----HHHHHHHhc--CCCEEEE
Confidence 344555667789999999764431 222344444 4667754
No 215
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=43.71 E-value=49 Score=34.76 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccC
Q 009559 253 VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDND 306 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDND 306 (532)
.+++++.+++ +.|.++-|||--.+..|..++ +. .++++|.||-|.-+|
T Consensus 70 v~~~~~~~~~-~~d~IIaiGGGsv~D~aK~iA-~~----~gip~I~VPTT~~~~ 117 (332)
T cd08549 70 LGEVLIKLDK-DTEFLLGIGSGTIIDLVKFVS-FK----VGKPFISVPTAPSMD 117 (332)
T ss_pred HHHHHHHhhc-CCCEEEEECCcHHHHHHHHHH-HH----cCCCEEEeCCCcccC
Confidence 4567777777 999999999999999988887 32 258999999997553
No 216
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=43.52 E-value=2.6e+02 Score=27.65 Aligned_cols=35 Identities=14% Similarity=0.365 Sum_probs=23.7
Q ss_pred hhcCCcceecccCCccHHHHHHHHHH--hCCcEEEEeCCh
Q 009559 237 HLSGGSLLGVSRGAPTVSEIVDSMEE--RGINMLFVLGGN 274 (532)
Q Consensus 237 ~~~GGSiLGTSR~~~~~~~ivd~L~~--~gId~L~vIGGd 274 (532)
.+.|||.|++. ...+++++.+.+ .+.+-++|.+|-
T Consensus 4 iK~GGs~l~~~---~~~~~~~~~i~~l~~g~~vvvV~Sg~ 40 (227)
T cd04234 4 QKFGGTSVASA---ERIKRVADIIKAYEKGNRVVVVVSAM 40 (227)
T ss_pred EEECccccCCH---HHHHHHHHHHHHhhcCCCEEEEEcCC
Confidence 45799999754 234555555444 699999999763
No 217
>PRK07524 hypothetical protein; Provisional
Probab=43.20 E-value=5.1e+02 Score=28.86 Aligned_cols=188 Identities=15% Similarity=0.137 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHcCCceEEEEccccc-ccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHHHHHHHH--hCCcEE
Q 009559 192 VIRHIVITLEIYGVKNIVGIPFGYR-GFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEIVDSMEE--RGINML 268 (532)
Q Consensus 192 vIr~iv~~l~~ygv~~V~Gi~~Gy~-GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ivd~L~~--~gId~L 268 (532)
+-..+++.|..+|++.|||+.++.. .|++ .+...+=..+ .+|......-+.+..-+ .++-.+
T Consensus 4 ~a~~l~~~L~~~Gv~~vFg~pG~~~~~~~d--------------al~~~~i~~i-~~~hE~~A~~mAdgyar~tg~~gv~ 68 (535)
T PRK07524 4 CGEALVRLLEAYGVETVFGIPGVHTVELYR--------------GLAGSGIRHV-TPRHEQGAGFMADGYARVSGKPGVC 68 (535)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCcchHHHHH--------------HHhhcCCcEE-EeccHHHHHHHHHHHHHHhCCCeEE
Confidence 4467888889999999999887731 1111 1111111223 23433322223332222 346778
Q ss_pred EEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCC-----ccCC----hhh---------HHHHHHHHHHHH
Q 009559 269 FVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMD-----KTFG----FDT---------AVEEAQRAINSA 330 (532)
Q Consensus 269 ~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD-----~SfG----FdT---------Av~~a~~aI~~a 330 (532)
++-.|=|......-|++... -+++|+.|-.+....-.+-+ .++. |.. -.+.+.+.++.+
T Consensus 69 ~~t~GpG~~n~~~gi~~A~~---~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A 145 (535)
T PRK07524 69 FIITGPGMTNIATAMGQAYA---DSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAAFSHTLMSAEDLPEVLARA 145 (535)
T ss_pred EECCCccHHHHHHHHHHHHh---cCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhhceeEEEeCCHHHHHHHHHHH
Confidence 88889999888888876543 24677776554433221110 0000 000 133456667777
Q ss_pred HHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccCceEEEeeccc
Q 009559 331 YIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVVCVAEGA 405 (532)
Q Consensus 331 ~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg~~VVVVAEGa 405 (532)
...|.+.+.|-..+++- ++ +.. .-.. .+....|...........-++.+.+++++-..-+|++.-|+
T Consensus 146 ~~~A~~~~~GPV~l~iP-~D---v~~-~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~ 212 (535)
T PRK07524 146 FAVFDSARPRPVHIEIP-LD---VLA-APAD---HLLPAPPTRPARPGPAPAALAQAAERLAAARRPLILAGGGA 212 (535)
T ss_pred HHHHhcCCCCcEEEEeC-Hh---HHh-cccc---cccCcccccCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCh
Confidence 77777655665566553 11 100 0000 00000011111111123456666677777777888887776
No 218
>PRK09330 cell division protein FtsZ; Validated
Probab=43.07 E-value=3.1e+02 Score=30.02 Aligned_cols=133 Identities=23% Similarity=0.432 Sum_probs=70.9
Q ss_pred cHHHHHHHHHHhCCcEEEEeC----ChhhHHHHHHHHHHHHhcCC-CceEeeeecccccCCCCCCccCChhh--HHHHHH
Q 009559 252 TVSEIVDSMEERGINMLFVLG----GNGTHAGANAIHNECRKRRM-KVAVVGVPKTIDNDILLMDKTFGFDT--AVEEAQ 324 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIG----GdGT~~gA~~L~ee~~kr~~-~I~VIGIPKTIDNDI~~tD~SfGFdT--Av~~a~ 324 (532)
+.++|-+.|+ +-|++|++- |-||-.+. .|++.+++.+. -++|+-.| |-|+- -.+.|.
T Consensus 87 ~~e~I~~~l~--~~D~vfI~AGmGGGTGTGaap-vIA~iake~g~ltvaVvt~P-------------F~fEG~~r~~nA~ 150 (384)
T PRK09330 87 SREEIREALE--GADMVFITAGMGGGTGTGAAP-VVAEIAKELGILTVAVVTKP-------------FSFEGKKRMKQAE 150 (384)
T ss_pred HHHHHHHHHc--CCCEEEEEecCCCcccHHHHH-HHHHHHHHcCCcEEEEEecC-------------ccccchhHHHHHH
Confidence 3456666775 889999984 44444333 56666666553 23344333 33332 234566
Q ss_pred HHHHHHHHhhhhc---cccEEEEEecCCCccHHHHH----HhHhc---CCccEEEcCCCCCCCCChhHHHHHHHHHHhcc
Q 009559 325 RAINSAYIEAHSA---YHGIGIVKLMGRSSGYIAMH----ASLAS---GQIDICLIPESPFNLHGPNGVLRHLKYLIETK 394 (532)
Q Consensus 325 ~aI~~a~~eA~S~---~~~V~vVevMGR~sG~LA~~----aaLAs---g~ad~~LIPE~pf~leg~~~ll~~lk~~~~~k 394 (532)
+.+..++..+-+. .|- -+.++.+++.+..-++ -.|+. +-.+++.-|- -..++ ++.|+..++..
T Consensus 151 ~gL~~L~~~~D~vIvi~Nd-~L~~~~~~~~~l~~Af~~ad~vL~~~v~~It~~i~~pG-~iNvD-----faDvk~vm~~~ 223 (384)
T PRK09330 151 EGIEELRKHVDTLIVIPND-KLLEVVDKKTPLLDAFKAADDVLRQAVQGITDLITKPG-LINLD-----FADVKTVMSEM 223 (384)
T ss_pred HHHHHHHHHCCEEEEEecH-HHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccCC-----HHHHHHHHhcC
Confidence 6666665544432 111 2456556655543222 11221 1122332221 12222 57889999999
Q ss_pred CceEEEeeccccc
Q 009559 395 GSAVVCVAEGAGQ 407 (532)
Q Consensus 395 g~~VVVVAEGag~ 407 (532)
|.+++-++|+-++
T Consensus 224 G~a~~G~G~a~g~ 236 (384)
T PRK09330 224 GLAMMGIGEASGE 236 (384)
T ss_pred CeEEEEEEEecCc
Confidence 9999999888764
No 219
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=43.00 E-value=3.4e+02 Score=30.78 Aligned_cols=185 Identities=15% Similarity=0.204 Sum_probs=102.1
Q ss_pred HHHHHHHHHHcCCceEEEEcccc-cccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHHHHHHHH--hCCcEEE
Q 009559 193 IRHIVITLEIYGVKNIVGIPFGY-RGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEIVDSMEE--RGINMLF 269 (532)
Q Consensus 193 Ir~iv~~l~~ygv~~V~Gi~~Gy-~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ivd~L~~--~gId~L~ 269 (532)
-..+++.|..+|+++|||+.++. ..|++ .+...+=.++. +|......-+.+..-+ .++-.++
T Consensus 18 a~~l~~~L~~~GV~~vFGipG~~~~~l~d--------------al~~~~i~~i~-~rhE~~A~~mAdgyar~tg~~gv~~ 82 (570)
T PRK06725 18 AGHVIQCLKKLGVTTVFGYPGGAILPVYD--------------ALYESGLKHIL-TRHEQAAIHAAEGYARASGKVGVVF 82 (570)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcchHHHHH--------------HHHhcCCcEEE-ecCHHHHHHHHHHHHHHhCCCeEEE
Confidence 45678888999999999988762 33332 22222334443 4544433334443322 3488888
Q ss_pred EeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCc------cCCh---------hhHHHHHHHHHHHHHHhh
Q 009559 270 VLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDK------TFGF---------DTAVEEAQRAINSAYIEA 334 (532)
Q Consensus 270 vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~------SfGF---------dTAv~~a~~aI~~a~~eA 334 (532)
+.-|=|.......|++... -+++|+.|-.....+..+.+. .-=| -+..+.+.+.++.+...|
T Consensus 83 ~t~GpG~~N~~~gla~A~~---~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A 159 (570)
T PRK06725 83 ATSGPGATNLVTGLADAYM---DSIPLVVITGQVATPLIGKDGFQEADVVGITVPVTKHNYQVRDVNQLSRIVQEAFYIA 159 (570)
T ss_pred ECCCccHHHHHHHHHHHhh---cCcCEEEEecCCCcccccCCCCcccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHH
Confidence 8899999988888886543 257888887666655432221 0000 123556677777777777
Q ss_pred hhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCC----CCC--CCCChhHHHHHHHHHHhccCceEEEeecccc
Q 009559 335 HSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPE----SPF--NLHGPNGVLRHLKYLIETKGSAVVCVAEGAG 406 (532)
Q Consensus 335 ~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE----~pf--~leg~~~ll~~lk~~~~~kg~~VVVVAEGag 406 (532)
.+-+.|-..+++- ++ +.. ..++. ..|+ .++ .......-++.+.+++.+-.+-+|++.-|+.
T Consensus 160 ~s~~~GPV~l~iP-~D---v~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~rPvIl~G~g~~ 226 (570)
T PRK06725 160 ESGRPGPVLIDIP-KD---VQN------EKVTS-FYNEVVEIPGYKPEPRPDSMKLREVAKAISKAKRPLLYIGGGVI 226 (570)
T ss_pred hcCCCCcEEEccc-cc---hhh------ccccc-ccCcccccccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCcc
Confidence 7755565566653 11 110 00110 0010 000 0011123466666677766777888887773
No 220
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=42.97 E-value=1.8e+02 Score=29.26 Aligned_cols=98 Identities=13% Similarity=0.228 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceeccc---CCccHHHHHHHHHHhCCcE
Q 009559 191 DVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSR---GAPTVSEIVDSMEERGINM 267 (532)
Q Consensus 191 avIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR---~~~~~~~ivd~L~~~gId~ 267 (532)
...+.++..+...|+++|.-+..-.. +. ..+.....+.+...|+.+...-. +..+...++..+++.+-|+
T Consensus 120 ~~~~~~~~~l~~~~~~~v~~l~~~~~--~g-----~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~~~~~~pd~ 192 (336)
T cd06360 120 QWAAPMGKYAADDGYKKVVTVAWDYA--FG-----YEVVEGFKEAFTEAGGKIVKELWVPFGTSDFASYLAQIPDDVPDA 192 (336)
T ss_pred HHHHHHHHHHHHcCCCeEEEEeccch--hh-----HHHHHHHHHHHHHcCCEEEEEEecCCCCcchHHHHHHHHhcCCCE
Confidence 34566777777778776654432111 10 01112233445567887776533 3457889999999999999
Q ss_pred EEEeCChhhHHHHHHHHHHHHhcCC--CceEee
Q 009559 268 LFVLGGNGTHAGANAIHNECRKRRM--KVAVVG 298 (532)
Q Consensus 268 L~vIGGdGT~~gA~~L~ee~~kr~~--~I~VIG 298 (532)
+++++... .+..+.+++++.|+ ++.+++
T Consensus 193 v~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~ 222 (336)
T cd06360 193 VFVFFAGG---DAIKFVKQYDAAGLKAKIPLIG 222 (336)
T ss_pred EEEecccc---cHHHHHHHHHHcCCccCCeEEe
Confidence 98765432 23445667777787 555554
No 221
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=42.97 E-value=1.9e+02 Score=30.88 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=21.7
Q ss_pred HHHHHHHcCCceEEEEcccccccccCCc
Q 009559 196 IVITLEIYGVKNIVGIPFGYRGFCDKEL 223 (532)
Q Consensus 196 iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~ 223 (532)
+.+.|...|+++|+-+.+||.+....++
T Consensus 73 aa~~L~~~G~~~v~~l~GG~~~W~~~g~ 100 (376)
T PRK08762 73 AAATLRELGYTRVASVAGGFSAWKDAGL 100 (376)
T ss_pred HHHHHHHcCCCceEeecCcHHHHHhcCC
Confidence 4556778999889999999998876543
No 222
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=42.73 E-value=88 Score=31.90 Aligned_cols=84 Identities=27% Similarity=0.408 Sum_probs=54.4
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHH-HHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccH
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITL-EIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTV 253 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l-~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~ 253 (532)
.++.++ || .|+ |+..+++.+ .+||+ +|.|.++||-. .+ -..+.++.|...+-.+|=.+=|.|.-
T Consensus 106 ~~v~ll--G~-~~~---v~~~a~~~l~~~y~l-~i~g~~~Gyf~---~~-----e~~~i~~~I~~s~~dil~VglG~PkQ 170 (243)
T PRK03692 106 TPVFLV--GG-KPE---VLAQTEAKLRTQWNV-NIVGSQDGYFT---PE-----QRQALFERIHASGAKIVTVAMGSPKQ 170 (243)
T ss_pred CeEEEE--CC-CHH---HHHHHHHHHHHHhCC-EEEEEeCCCCC---HH-----HHHHHHHHHHhcCCCEEEEECCCcHH
Confidence 455444 44 444 344455555 35787 69999999853 11 12457888999888887666666666
Q ss_pred HHHHHH-HHHhCCcEEEEeCC
Q 009559 254 SEIVDS-MEERGINMLFVLGG 273 (532)
Q Consensus 254 ~~ivd~-L~~~gId~L~vIGG 273 (532)
|..++. .+..+...++.+||
T Consensus 171 E~~~~~~~~~~~~~v~~gvGg 191 (243)
T PRK03692 171 EIFMRDCRLVYPDALYMGVGG 191 (243)
T ss_pred HHHHHHHHHhCCCCEEEEeCe
Confidence 665544 45557788888888
No 223
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=42.61 E-value=2.4e+02 Score=26.00 Aligned_cols=118 Identities=16% Similarity=0.203 Sum_probs=69.7
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHH-HHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC--
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITL-EIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA-- 250 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l-~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~-- 250 (532)
+.|+-+-+.||+. ++.=..++..+ ...|+ +|+ ..+.. . -.++.++.....+..+++-|-..
T Consensus 2 ~~~v~~a~~g~D~---Hd~g~~iv~~~l~~~Gf-eVi---------~lg~~--~-s~e~~v~aa~e~~adii~iSsl~~~ 65 (132)
T TIGR00640 2 RPRILVAKMGQDG---HDRGAKVIATAYADLGF-DVD---------VGPLF--Q-TPEEIARQAVEADVHVVGVSSLAGG 65 (132)
T ss_pred CCEEEEEeeCCCc---cHHHHHHHHHHHHhCCc-EEE---------ECCCC--C-CHHHHHHHHHHcCCCEEEEcCchhh
Confidence 4678888888864 44444555444 56777 453 11111 0 12345677777777777765532
Q ss_pred --ccHHHHHHHHHHhCC-cEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHH
Q 009559 251 --PTVSEIVDSMEERGI-NMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAI 327 (532)
Q Consensus 251 --~~~~~ivd~L~~~gI-d~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI 327 (532)
....++++.|++.+. +..+++||.=.-... ++.++. ++|..|+=.|-+....+++
T Consensus 66 ~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~----~~l~~~------------------Gvd~~~~~gt~~~~i~~~l 123 (132)
T TIGR00640 66 HLTLVPALRKELDKLGRPDILVVVGGVIPPQDF----DELKEM------------------GVAEIFGPGTPIPESAIFL 123 (132)
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhH----HHHHHC------------------CCCEEECCCCCHHHHHHHH
Confidence 245677888888877 566777775432221 222322 4567777777777777776
Q ss_pred HH
Q 009559 328 NS 329 (532)
Q Consensus 328 ~~ 329 (532)
..
T Consensus 124 ~~ 125 (132)
T TIGR00640 124 LK 125 (132)
T ss_pred HH
Confidence 65
No 224
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=41.78 E-value=89 Score=24.61 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=38.8
Q ss_pred ccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeeccc
Q 009559 251 PTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTI 303 (532)
Q Consensus 251 ~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTI 303 (532)
...+++++..++.|++.+.+-==+ ++.+...+.+.+++.+++ .+.|+--++
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~-~~~~~~~~~~~~~~~gi~-~i~G~E~~~ 65 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHG-NLFGAVEFYKAAKKAGIK-PIIGLEANI 65 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCC-cccCHHHHHHHHHHcCCe-EEEEEEEEe
Confidence 357899999999999998876544 788888888888877654 356665544
No 225
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.45 E-value=3.6e+02 Score=26.55 Aligned_cols=70 Identities=16% Similarity=0.161 Sum_probs=42.4
Q ss_pred cchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHHHHHHHHhCC
Q 009559 186 CPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEIVDSMEERGI 265 (532)
Q Consensus 186 cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ivd~L~~~gI 265 (532)
-|..+.++.++-+.+..+|+. +.-+...+ -.+.++.+.+.++
T Consensus 16 ~~~~~~~~~gi~~~a~~~g~~-~~~~~~~~-------------------------------------~~~~~~~~~~~~~ 57 (283)
T cd06279 16 DPVASQFLAGVAEVLDAAGVN-LLLLPASS-------------------------------------EDSDSALVVSALV 57 (283)
T ss_pred CccHHHHHHHHHHHHHHCCCE-EEEecCcc-------------------------------------HHHHHHHHHhcCC
Confidence 567777888888888788873 43211000 1235566788999
Q ss_pred cEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 266 NMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 266 d~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
|++++.+-+.+.. ..+++++.+ ++||.+
T Consensus 58 dgiii~~~~~~~~----~~~~~~~~~--ipvV~~ 85 (283)
T cd06279 58 DGFIVYGVPRDDP----LVAALLRRG--LPVVVV 85 (283)
T ss_pred CEEEEeCCCCChH----HHHHHHHcC--CCEEEE
Confidence 9999998765432 223444444 556654
No 226
>TIGR03586 PseI pseudaminic acid synthase.
Probab=40.84 E-value=3.8e+02 Score=28.67 Aligned_cols=146 Identities=18% Similarity=0.260 Sum_probs=87.8
Q ss_pred HHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHHHHHHHHhCCcEEEEeCC
Q 009559 194 RHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEIVDSMEERGINMLFVLGG 273 (532)
Q Consensus 194 r~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ivd~L~~~gId~L~vIGG 273 (532)
+.+..++.++|+. ++ .-+.+.+.++-+...|=.++...-+.-.--.+++.+-+.+.-.++=-|.
T Consensus 80 ~~L~~~~~~~Gi~-~~---------------stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~ 143 (327)
T TIGR03586 80 KELFERAKELGLT-IF---------------SSPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGI 143 (327)
T ss_pred HHHHHHHHHhCCc-EE---------------EccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCC
Confidence 3455666777773 22 1135667777766655445543222222234667777889999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHH-HHHHHHHHhhhhccccEEEEEecCCCcc
Q 009559 274 NGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQ-RAINSAYIEAHSAYHGIGIVKLMGRSSG 352 (532)
Q Consensus 274 dGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~-~aI~~a~~eA~S~~~~V~vVevMGR~sG 352 (532)
.|+.-.....+++++.|.+ ||.+..++-+|.|..+.+. .+|..++... +--||+. +-..|
T Consensus 144 -~t~~Ei~~Av~~i~~~g~~------------~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f---~~pVG~S---DHt~G 204 (327)
T TIGR03586 144 -ATLEEIQEAVEACREAGCK------------DLVLLKCTSSYPAPLEDANLRTIPDLAERF---NVPVGLS---DHTLG 204 (327)
T ss_pred -CCHHHHHHHHHHHHHCCCC------------cEEEEecCCCCCCCcccCCHHHHHHHHHHh---CCCEEee---CCCCc
Confidence 6888888777888776641 2333344445665554432 3444343322 1236554 46778
Q ss_pred HHHHHHhHhcCCccEEEcCCCCCCCC
Q 009559 353 YIAMHASLASGQIDICLIPESPFNLH 378 (532)
Q Consensus 353 ~LA~~aaLAsg~ad~~LIPE~pf~le 378 (532)
..+..+|.|.| |+++ |.-|+++
T Consensus 205 ~~~~~aAva~G-A~iI---EkH~tld 226 (327)
T TIGR03586 205 ILAPVAAVALG-ACVI---EKHFTLD 226 (327)
T ss_pred hHHHHHHHHcC-CCEE---EeCCChh
Confidence 88899999999 6633 6666654
No 227
>PLN02335 anthranilate synthase
Probab=40.60 E-value=30 Score=34.48 Aligned_cols=47 Identities=15% Similarity=0.231 Sum_probs=33.0
Q ss_pred HHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhH
Q 009559 260 MEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTA 319 (532)
Q Consensus 260 L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTA 319 (532)
++.++.++|++-||-|+-.......+.+++.+-+++|.|| |+||+--
T Consensus 58 ~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~PiLGI-------------ClG~QlL 104 (222)
T PLN02335 58 LKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGV-------------CMGLQCI 104 (222)
T ss_pred HHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCCCEEEe-------------cHHHHHH
Confidence 4557899999999999876543333444444456788887 9999843
No 228
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=40.60 E-value=25 Score=31.33 Aligned_cols=46 Identities=22% Similarity=0.350 Sum_probs=25.4
Q ss_pred HHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeeccc
Q 009559 255 EIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTI 303 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTI 303 (532)
++.+.+.+..++.++++-||+-+.-+. +.++++|.++-|++.+...
T Consensus 86 d~~~~~~~~~~d~ivLvSgD~Df~~~v---~~l~~~g~~V~v~~~~~~~ 131 (146)
T PF01936_consen 86 DILELAYENPPDTIVLVSGDSDFAPLV---RKLRERGKRVIVVGAEDSA 131 (146)
T ss_dssp HHHHHG--GG-SEEEEE---GGGHHHH---HHHHHH--EEEEEE-GGGS
T ss_pred HHHHHhhccCCCEEEEEECcHHHHHHH---HHHHHcCCEEEEEEeCCCC
Confidence 344445455679999999999886654 5556678888888864443
No 229
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=40.53 E-value=94 Score=32.12 Aligned_cols=103 Identities=12% Similarity=0.076 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC---ccHHHHHHHHHHh-
Q 009559 188 GLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA---PTVSEIVDSMEER- 263 (532)
Q Consensus 188 GlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~---~~~~~ivd~L~~~- 263 (532)
.-....+.++..+...|+++|.-+... ..+- ..+.....+.+...|+.+.++.... .+.+..+..|+..
T Consensus 107 ~~~~~~~~~~~~~~~~g~k~vaii~~~------~~~g-~~~~~~f~~~~~~~G~~vv~~~~~~~~~~d~~~~i~~i~~~~ 179 (336)
T cd06339 107 SPEDEARRAAEYARSQGKRRPLVLAPD------GAYG-QRVADAFRQAWQQLGGTVVAIESYDPSPTDLSDAIRRLLGVD 179 (336)
T ss_pred ChHHHHHHHHHHHHhcCccceEEEecC------ChHH-HHHHHHHHHHHHHcCCceeeeEecCCCHHHHHHHHHHHhccc
Confidence 344567778888776788766444321 1110 1122333455666788888776544 4677788888877
Q ss_pred --------------------CCcEEEEeCChhhHHHHHHHHHHHHhcC---CCceEeee
Q 009559 264 --------------------GINMLFVLGGNGTHAGANAIHNECRKRR---MKVAVVGV 299 (532)
Q Consensus 264 --------------------gId~L~vIGGdGT~~gA~~L~ee~~kr~---~~I~VIGI 299 (532)
+.|+++++|--+ ..+..+.+.+++.+ .+++++|-
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~ 236 (336)
T cd06339 180 DSEQRIAQLKSLESEPRRRQDIDAIDAVALPD--GEARLIKPQLLFYYGVPGDVPLYGT 236 (336)
T ss_pred cchhhhhhhhhcccCccccCCCCcEEEEecCh--hhhhhhcchhhhhccCcCCCCEEEe
Confidence 999999877654 23344544554444 36778864
No 230
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=40.50 E-value=85 Score=32.11 Aligned_cols=145 Identities=21% Similarity=0.235 Sum_probs=79.0
Q ss_pred HHcCCceEEEEcccccc-cccCCceeecCCHHHHhhhhhcCCcceecccCCc-cHHHHHHHHHHhCCcEEEEe----CCh
Q 009559 201 EIYGVKNIVGIPFGYRG-FCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP-TVSEIVDSMEERGINMLFVL----GGN 274 (532)
Q Consensus 201 ~~ygv~~V~Gi~~Gy~G-L~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~-~~~~ivd~L~~~gId~L~vI----GGd 274 (532)
.++|+ .++-+.-=+.| -|.++ ++++++.+-......+.+..||--.+ +..++.+.+.+.+-+.+++| |=-
T Consensus 18 ~~~~i-~vvPl~i~~~~~~y~D~---~~i~~~efy~~l~~~~~~p~TS~ps~~~~~~~f~~~~~~gyd~ii~i~iSs~LS 93 (280)
T PF02645_consen 18 EEYGI-YVVPLNIIIDGKEYRDG---VDISPEEFYEKLRESGEIPKTSQPSPGEFEEAFEKLLEEGYDEIIVITISSGLS 93 (280)
T ss_dssp HHTTE-EEE--EEEETTEEEETT---TTSCHHHHHHHHHHTTSEEEEE---HHHHHHHHHHHHHTTTSEEEEEES-TTT-
T ss_pred HhCCe-EEEeEEEecCCeEEecC---CCCCHHHHHHHHHhcCCCceecCCCHHHHHHHHHHHHHCCCCeEEEEeCCcchh
Confidence 56887 34433322222 22222 35788888877766788778876332 56777788778999988777 567
Q ss_pred hhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHH------HHHh---hhhccccEEEEE
Q 009559 275 GTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINS------AYIE---AHSAYHGIGIVK 345 (532)
Q Consensus 275 GT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~------a~~e---A~S~~~~V~vVe 345 (532)
||+..|...++.. .+.+|.|+ |.- ..|.|..=-+..|++.+++ +... .....+-+++++
T Consensus 94 gty~~a~~aa~~~--~~~~i~Vi------DS~----~~s~g~g~lv~~a~~l~~~G~s~~ei~~~l~~~~~~~~~~f~~~ 161 (280)
T PF02645_consen 94 GTYNSARLAAKML--PDIKIHVI------DSK----SVSAGQGLLVLEAAKLIEQGKSFEEIVEKLEELRERTRTYFVVD 161 (280)
T ss_dssp THHHHHHHHHHHH--TTTEEEEE------E-S----S-HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTEEEEEEES
T ss_pred hHHHHHHHHHhhc--CcCEEEEE------eCC----CcchhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhceEEEEec
Confidence 8999998888776 33445554 111 1234444444444443322 1111 111223356777
Q ss_pred e------cCCCccHHHHHHhHh
Q 009559 346 L------MGRSSGYIAMHASLA 361 (532)
Q Consensus 346 v------MGR~sG~LA~~aaLA 361 (532)
. =||=++-.|+-+.+-
T Consensus 162 ~L~~L~kgGRis~~~a~ig~lL 183 (280)
T PF02645_consen 162 DLKYLRKGGRISKAAAFIGNLL 183 (280)
T ss_dssp -SHHHHHCTSSGHHHHHHHHCT
T ss_pred hHHHHHHCCCcCchhhhhhhhh
Confidence 6 477776666555544
No 231
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=40.49 E-value=45 Score=36.10 Aligned_cols=54 Identities=20% Similarity=0.352 Sum_probs=45.5
Q ss_pred ccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCC
Q 009559 251 PTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILL 309 (532)
Q Consensus 251 ~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~ 309 (532)
.+.++++..+...+.|.++=|||--+++.|..++.. +++++|.||-+=.+|=+.
T Consensus 71 ~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~-----~~~pfIsvPT~AS~Da~~ 124 (360)
T COG0371 71 EEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYR-----LGLPFISVPTIASTDAIT 124 (360)
T ss_pred HHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHH-----cCCCEEEecCcccccccc
Confidence 356777777777889999999999999999988864 578999999999999653
No 232
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=40.36 E-value=1.1e+02 Score=37.49 Aligned_cols=106 Identities=14% Similarity=0.167 Sum_probs=62.2
Q ss_pred CcEEEEEeCCCCc----chHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccC
Q 009559 174 EVKAAIVTCGGLC----PGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRG 249 (532)
Q Consensus 174 ~~kiaIvt~GG~c----PGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~ 249 (532)
-.||.|+-+|+.. .=..-.-.++.+.|.+.|+ +|+.+..--.. +..++...+.... .
T Consensus 7 ~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~-~vi~v~~np~~--------~~~d~~~ad~~y~----------e 67 (1068)
T PRK12815 7 IQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGY-QVVLVNPNPAT--------IMTDPAPADTVYF----------E 67 (1068)
T ss_pred CCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCC-EEEEEeCCcch--------hhcCcccCCeeEE----------C
Confidence 3588888888653 3233344567777888899 57776421111 1011111111000 1
Q ss_pred CccHHHHHHHHHHhCCcEEEE-eCChhhHHHHHHHHHH--HHhcCCCceEeeee
Q 009559 250 APTVSEIVDSMEERGINMLFV-LGGNGTHAGANAIHNE--CRKRRMKVAVVGVP 300 (532)
Q Consensus 250 ~~~~~~ivd~L~~~gId~L~v-IGGdGT~~gA~~L~ee--~~kr~~~I~VIGIP 300 (532)
..+.+.+.+.+++.++|+++. +||+..+..+..+++. +++ +++.++|.+
T Consensus 68 p~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~--~gv~l~g~~ 119 (1068)
T PRK12815 68 PLTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQ--YGVELLGTN 119 (1068)
T ss_pred CCCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHH--CCCEEECCC
Confidence 124567788899999999995 6888778887777643 343 456777654
No 233
>PRK06154 hypothetical protein; Provisional
Probab=40.30 E-value=4.5e+02 Score=29.75 Aligned_cols=185 Identities=13% Similarity=0.163 Sum_probs=102.3
Q ss_pred HHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHHHHHHHHh----CCcEE
Q 009559 193 IRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEIVDSMEER----GINML 268 (532)
Q Consensus 193 Ir~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ivd~L~~~----gId~L 268 (532)
-..+++.|...|++.|||+. |. .| ++.+...+=.++ .+|......-+.+.--+. ++-.+
T Consensus 23 a~~l~~~L~~~GV~~vFGip-~~-~l--------------~dal~~~~i~~i-~~rhE~~A~~mAdgyar~t~g~~~gv~ 85 (565)
T PRK06154 23 AEAVAEILKEEGVELLFGFP-VN-EL--------------FDAAAAAGIRPV-IARTERVAVHMADGYARATSGERVGVF 85 (565)
T ss_pred HHHHHHHHHHcCCCEEEeCc-CH-HH--------------HHHHHhcCCeEE-eeCcHHHHHHHHHHHHHhcCCCCCEEE
Confidence 35678888899999999987 21 22 233322222333 356544444455555443 47777
Q ss_pred EEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhH---------------HHHHHHHHHHHHHh
Q 009559 269 FVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTA---------------VEEAQRAINSAYIE 333 (532)
Q Consensus 269 ~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTA---------------v~~a~~aI~~a~~e 333 (532)
++--|=|......-|++... -+++|+.|-...+.+....+.. +|+. .+.+.+.++.+...
T Consensus 86 ~~t~GPG~~N~~~gla~A~~---~~~Pvl~i~G~~~~~~~~~~~~--~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~ 160 (565)
T PRK06154 86 AVQYGPGAENAFGGVAQAYG---DSVPVLFLPTGYPRGSTDVAPN--FESLRNYRHITKWCEQVTLPDEVPELMRRAFTR 160 (565)
T ss_pred EECCCccHHHHHHHHHHHhh---cCCCEEEEeCCCCcccccCCCC--cchhhhHhhcceeEEECCCHHHHHHHHHHHHHH
Confidence 78789998888888876543 3578888877766664322211 2221 24456677777777
Q ss_pred hhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccCceEEEeecccc
Q 009559 334 AHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVVCVAEGAG 406 (532)
Q Consensus 334 A~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg~~VVVVAEGag 406 (532)
|.+.+.|-..+++-- + +-... . ........|..+.........++.+-+++.+-.+-+|++.-|+.
T Consensus 161 A~s~~~GPV~l~iP~-D---v~~~~-~--~~~~~~~~~~~~~~~~~~~~~i~~aa~~L~~A~rPvil~G~g~~ 226 (565)
T PRK06154 161 LRNGRPGPVVLELPV-D---VLAEE-L--DELPLDHRPSRRSRPGADPVEVVEAAALLLAAERPVIYAGQGVL 226 (565)
T ss_pred HhcCCCceEEEecch-H---Hhhhh-c--ccccccccCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 877666666667642 2 11110 0 00011011111111111234566666677776778888888773
No 234
>CHL00101 trpG anthranilate synthase component 2
Probab=40.25 E-value=45 Score=32.13 Aligned_cols=49 Identities=12% Similarity=0.209 Sum_probs=30.7
Q ss_pred HHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHH
Q 009559 260 MEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVE 321 (532)
Q Consensus 260 L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~ 321 (532)
+.+.++|+|++.||.|+........+..+.-..+++|.|| |+|++--+.
T Consensus 39 ~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGI-------------ClG~Qlla~ 87 (190)
T CHL00101 39 IKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGV-------------CLGHQSIGY 87 (190)
T ss_pred HhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEE-------------chhHHHHHH
Confidence 4567899999999999875432111111111235677776 999876544
No 235
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=39.85 E-value=80 Score=32.08 Aligned_cols=87 Identities=20% Similarity=0.244 Sum_probs=55.6
Q ss_pred EEEEcccccccccCCceeecCCHHHHhhhhhcCCc--ce-ecccCCc--cHHHHHHHHHHhCCcEEEEeCChhhHH----
Q 009559 208 IVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGS--LL-GVSRGAP--TVSEIVDSMEERGINMLFVLGGNGTHA---- 278 (532)
Q Consensus 208 V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGS--iL-GTSR~~~--~~~~ivd~L~~~gId~L~vIGGdGT~~---- 278 (532)
.+-+.+|-.|-. ...+......+...+|- +. =|+|+.. .++..+..+.+.||+.+++++||-...
T Consensus 31 ~v~Vt~~~~g~~------~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~ 104 (274)
T cd00537 31 FVSVTDGAGGST------RDMTLLAAARILQEGGIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDPPKGGDQP 104 (274)
T ss_pred EEEeCCCCCCch------hhhHHHHHHHHHHhcCCCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCC
Confidence 555666555411 12345556666666651 22 1455433 577888999999999999999986543
Q ss_pred --------HHHHHHHHHHhc---CCCceEeeee
Q 009559 279 --------GANAIHNECRKR---RMKVAVVGVP 300 (532)
Q Consensus 279 --------gA~~L~ee~~kr---~~~I~VIGIP 300 (532)
.|..|-+.+++. +..+.|.+.|
T Consensus 105 ~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yP 137 (274)
T cd00537 105 GAKPVGFVYAVDLVELIRKENGGGFSIGVAAYP 137 (274)
T ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCccccccCC
Confidence 377777777763 4566666666
No 236
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=39.74 E-value=91 Score=29.32 Aligned_cols=39 Identities=15% Similarity=0.154 Sum_probs=29.1
Q ss_pred CCCcEEEEEeCCCCcc---hHHHHHHHHHHHHHHcCCceEEEE
Q 009559 172 PEEVKAAIVTCGGLCP---GLNDVIRHIVITLEIYGVKNIVGI 211 (532)
Q Consensus 172 p~~~kiaIvt~GG~cP---GlNavIr~iv~~l~~ygv~~V~Gi 211 (532)
.+..+++++.+|+..+ --+.+++.+...+...|. +++|.
T Consensus 76 l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~-~~ig~ 117 (167)
T TIGR01752 76 FTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGA-KVVGF 117 (167)
T ss_pred CCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCC-eEEce
Confidence 3568899999997542 447778888888888898 47664
No 237
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.65 E-value=3.9e+02 Score=26.43 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=19.6
Q ss_pred CCCC--cchHHHHHHHHHHHHHHcCCc
Q 009559 182 CGGL--CPGLNDVIRHIVITLEIYGVK 206 (532)
Q Consensus 182 ~GG~--cPGlNavIr~iv~~l~~ygv~ 206 (532)
.||+ -|-.+.++.++.+.+.++|+.
T Consensus 13 ~~~~~~~~~~~~~~~~i~~~~~~~gy~ 39 (269)
T cd06287 13 AGGPSRLGFMMEVAAAAAESALERGLA 39 (269)
T ss_pred cCCcccCccHHHHHHHHHHHHHHCCCE
Confidence 3554 366789999999999999884
No 238
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=39.40 E-value=5.2e+02 Score=29.11 Aligned_cols=137 Identities=18% Similarity=0.229 Sum_probs=82.0
Q ss_pred HHHHHHHHHHcCCceEEEEcccc-cccccCCceeecCCHHHHhhhhhc-CCcceecccCCccHHHHHHHH--HHhCCcEE
Q 009559 193 IRHIVITLEIYGVKNIVGIPFGY-RGFCDKELTEMPLSRKVVQNIHLS-GGSLLGVSRGAPTVSEIVDSM--EERGINML 268 (532)
Q Consensus 193 Ir~iv~~l~~ygv~~V~Gi~~Gy-~GL~~~~~~~i~Lt~~~V~~i~~~-GGSiLGTSR~~~~~~~ivd~L--~~~gId~L 268 (532)
-..+++.|...|+++|||+.++. ..|++ .+... +=.++ .+|......-+.+.. ...++-.+
T Consensus 6 ~~~l~~~L~~~Gv~~vFgipG~~~~~l~~--------------~l~~~~~i~~v-~~rhE~~A~~~Adgyar~tg~~gv~ 70 (563)
T PRK08527 6 SQMVCEALKEEGVKVVFGYPGGAILNIYD--------------EIYKQNYFKHI-LTRHEQAAVHAADGYARASGKVGVA 70 (563)
T ss_pred HHHHHHHHHHcCCCEEEECCCcchHHHHH--------------HHhccCCCeEE-EeccHHHHHHHHHHHHhhhCCCEEE
Confidence 35678888999999999998873 23332 22221 12333 344433332333322 22358888
Q ss_pred EEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCC------CCcc------CC---hhhHHHHHHHHHHHHHHh
Q 009559 269 FVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILL------MDKT------FG---FDTAVEEAQRAINSAYIE 333 (532)
Q Consensus 269 ~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~------tD~S------fG---FdTAv~~a~~aI~~a~~e 333 (532)
++.-|=|......-|++... -+++|+.|-.+..-+..+ +|.. -- --+..+.+.+.++.+...
T Consensus 71 ~~t~GpG~~n~~~gla~A~~---~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~~~~~i~~~l~~A~~~ 147 (563)
T PRK08527 71 IVTSGPGFTNAVTGLATAYM---DSIPLVLISGQVPNSLIGTDAFQEIDAVGISRPCVKHNYLVKSIEELPRILKEAFYI 147 (563)
T ss_pred EECCCCcHHHHHHHHHHHhh---cCCCEEEEecCCCccccCCCCCcccchhhhhhcccceEEEcCCHHHHHHHHHHHHHH
Confidence 99999999998888886543 357888886665543321 1110 00 112456677888888888
Q ss_pred hhhccccEEEEEec
Q 009559 334 AHSAYHGIGIVKLM 347 (532)
Q Consensus 334 A~S~~~~V~vVevM 347 (532)
|.+.+.|-..+++-
T Consensus 148 a~s~~~GPV~l~iP 161 (563)
T PRK08527 148 ARSGRPGPVHIDIP 161 (563)
T ss_pred HhcCCCCcEEEEcC
Confidence 88766565566654
No 239
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=39.33 E-value=47 Score=33.38 Aligned_cols=84 Identities=20% Similarity=0.345 Sum_probs=50.1
Q ss_pred CcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHh--hh-hhcCCccee------cccCCccHHH
Q 009559 185 LCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQ--NI-HLSGGSLLG------VSRGAPTVSE 255 (532)
Q Consensus 185 ~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~--~i-~~~GGSiLG------TSR~~~~~~~ 255 (532)
+.|| |+++|..|...|. +||-|.+||+-|+..--..+.+....+- .+ .-.-|-++| |||++-..+.
T Consensus 89 lT~G----i~eLv~~L~~~~~-~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~ 163 (227)
T KOG1615|consen 89 LTPG----IRELVSRLHARGT-QVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEV 163 (227)
T ss_pred cCCC----HHHHHHHHHHcCC-eEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHH
Confidence 4566 5789999999998 6999999999988641111233332221 11 122355555 6776655555
Q ss_pred HHHHHHHhCCcEEEEeCC
Q 009559 256 IVDSMEERGINMLFVLGG 273 (532)
Q Consensus 256 ivd~L~~~gId~L~vIGG 273 (532)
|....+.++.....+||-
T Consensus 164 i~~lrk~~~~~~~~mvGD 181 (227)
T KOG1615|consen 164 IALLRKNYNYKTIVMVGD 181 (227)
T ss_pred HHHHHhCCChheeEEecC
Confidence 544444455556666654
No 240
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=39.14 E-value=2.3e+02 Score=30.31 Aligned_cols=119 Identities=27% Similarity=0.393 Sum_probs=67.8
Q ss_pred EEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccc--cccCCc----------------eee--cCCHHH-Hhhh
Q 009559 178 AIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRG--FCDKEL----------------TEM--PLSRKV-VQNI 236 (532)
Q Consensus 178 aIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~G--L~~~~~----------------~~i--~Lt~~~-V~~i 236 (532)
=.||+||.=. |-+|+..-.+.++|.+ .+.+..++.- +.++++ .++ ...++. -+.+
T Consensus 66 TlvT~GgiQS---Nh~r~tAavA~~lGl~-~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~ 141 (323)
T COG2515 66 TLVTYGGIQS---NHVRQTAAVAAKLGLK-CVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEV 141 (323)
T ss_pred EEEEecccch---hHHHHHHHHHHhcCCc-EEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHH
Confidence 4689998753 5677777777899995 5566666661 001110 011 122222 3345
Q ss_pred hhcCCcce----ec-cc-CC----ccHHHHHHHHHH-hCCcEEEEe-CChhhHHHHH-HHHHHHHhcCCCceEeeeeccc
Q 009559 237 HLSGGSLL----GV-SR-GA----PTVSEIVDSMEE-RGINMLFVL-GGNGTHAGAN-AIHNECRKRRMKVAVVGVPKTI 303 (532)
Q Consensus 237 ~~~GGSiL----GT-SR-~~----~~~~~ivd~L~~-~gId~L~vI-GGdGT~~gA~-~L~ee~~kr~~~I~VIGIPKTI 303 (532)
.++|+..- |- |- +. .-..+|.+..++ ..+|.+++. |+-||+++-. .++ .-+.++.|||||.+=
T Consensus 142 ~~~g~kpyvIp~GG~~~~g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~----~~~~~~~ViG~~v~~ 217 (323)
T COG2515 142 RKQGGKPYVIPEGGSSPLGALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLA----QLGPDVEVIGIDVSA 217 (323)
T ss_pred HhcCCCCcEeccCCcCccccccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhh----hccCCCceEEEeecC
Confidence 56666311 22 11 11 135788888887 899988765 6666766632 222 234578999998874
Q ss_pred c
Q 009559 304 D 304 (532)
Q Consensus 304 D 304 (532)
|
T Consensus 218 ~ 218 (323)
T COG2515 218 D 218 (323)
T ss_pred C
Confidence 4
No 241
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=38.86 E-value=2.5e+02 Score=29.65 Aligned_cols=97 Identities=12% Similarity=0.197 Sum_probs=59.1
Q ss_pred EEEEeCChhhHHH-HHHHHHHHHhcCCCceEeeeecccccCCC---CCC-ccC---Chhh-----HHHHHHHHHH---HH
Q 009559 267 MLFVLGGNGTHAG-ANAIHNECRKRRMKVAVVGVPKTIDNDIL---LMD-KTF---GFDT-----AVEEAQRAIN---SA 330 (532)
Q Consensus 267 ~L~vIGGdGT~~g-A~~L~ee~~kr~~~I~VIGIPKTIDNDI~---~tD-~Sf---GFdT-----Av~~a~~aI~---~a 330 (532)
.++.-||-|-+-. |.+|++++++++.++.++|-++-++.++. +.+ .++ |+.- -+......+. .+
T Consensus 4 i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (352)
T PRK12446 4 IVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGVMDA 83 (352)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHHHHHH
Confidence 5788888888754 88999999999999999998888888762 222 122 3321 1111111111 11
Q ss_pred HHhhhhccccEEEEEecCCCccHHHHHHhHhcCCc
Q 009559 331 YIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQI 365 (532)
Q Consensus 331 ~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~a 365 (532)
..-.+.. +--+|=.+|.+.++-++.+|...+-+
T Consensus 84 ~~i~~~~--kPdvvi~~Ggy~s~p~~~aa~~~~~p 116 (352)
T PRK12446 84 YVRIRKL--KPDVIFSKGGFVSVPVVIGGWLNRVP 116 (352)
T ss_pred HHHHHhc--CCCEEEecCchhhHHHHHHHHHcCCC
Confidence 1111111 12245569988888888888887733
No 242
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=38.79 E-value=3.6e+02 Score=30.83 Aligned_cols=139 Identities=18% Similarity=0.205 Sum_probs=81.3
Q ss_pred HHHHHHHHHcCCceEEEEccc-ccccccCCceeecCCHHHHhhhhhcCC-cceecccCCccHHHHHHHHH--HhCCcEEE
Q 009559 194 RHIVITLEIYGVKNIVGIPFG-YRGFCDKELTEMPLSRKVVQNIHLSGG-SLLGVSRGAPTVSEIVDSME--ERGINMLF 269 (532)
Q Consensus 194 r~iv~~l~~ygv~~V~Gi~~G-y~GL~~~~~~~i~Lt~~~V~~i~~~GG-SiLGTSR~~~~~~~ivd~L~--~~gId~L~ 269 (532)
..+++.|..+|+++|||+.+| +.+|++. + ......++ .++ .+|....-.-+.+..- ..++-.++
T Consensus 23 ~~l~~~L~~~GV~~vFgipG~~~~~l~da-l----------~~~~~~~~i~~i-~~rhE~~Aa~aA~gyar~tgk~gv~~ 90 (616)
T PRK07418 23 YALMDSLKRHGVKHIFGYPGGAILPIYDE-L----------YKAEAEGWLKHI-LVRHEQGAAHAADGYARATGKVGVCF 90 (616)
T ss_pred HHHHHHHHHcCCCEEEeCcCcchHHHHHH-H----------HhcccCCCceEE-EeccHHHHHHHHHHHHHHhCCCeEEE
Confidence 467788889999999999886 4444432 0 00001112 233 3354443323333222 23588888
Q ss_pred EeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCc-----------c-CCh---hhHHHHHHHHHHHHHHhh
Q 009559 270 VLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDK-----------T-FGF---DTAVEEAQRAINSAYIEA 334 (532)
Q Consensus 270 vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~-----------S-fGF---dTAv~~a~~aI~~a~~eA 334 (532)
+.-|=|......-|++... -+++|+.|-..+..+-.+.+. . --| -+..+.+.+.++.+...|
T Consensus 91 ~t~GPG~~n~l~gl~~A~~---d~~Pvl~i~G~~~~~~~~~~~~Qe~d~~~~~~~vtk~~~~v~~~~~i~~~l~~A~~~A 167 (616)
T PRK07418 91 GTSGPGATNLVTGIATAQM---DSVPMVVITGQVPRPAIGTDAFQETDIFGITLPIVKHSYVVRDPSDMARIVAEAFHIA 167 (616)
T ss_pred ECCCccHHHHHHHHHHHHh---cCCCEEEEecCCCccccCCCCcccccHHHHhhhcceeEEEeCCHHHHHHHHHHHHHHH
Confidence 8889999988888886433 357888886655543322221 0 011 123456777888888888
Q ss_pred hhccccEEEEEec
Q 009559 335 HSAYHGIGIVKLM 347 (532)
Q Consensus 335 ~S~~~~V~vVevM 347 (532)
.+.+.|...|++-
T Consensus 168 ~~~~~GPv~l~iP 180 (616)
T PRK07418 168 SSGRPGPVLIDIP 180 (616)
T ss_pred hcCCCCcEEEecc
Confidence 7766576667764
No 243
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=38.62 E-value=41 Score=26.45 Aligned_cols=50 Identities=10% Similarity=0.178 Sum_probs=35.5
Q ss_pred eecccCCccHHHHHHHHHHhCCcE------------EEEeCChhhHHHHHHHHHHHH-hcCCC
Q 009559 244 LGVSRGAPTVSEIVDSMEERGINM------------LFVLGGNGTHAGANAIHNECR-KRRMK 293 (532)
Q Consensus 244 LGTSR~~~~~~~ivd~L~~~gId~------------L~vIGGdGT~~gA~~L~ee~~-kr~~~ 293 (532)
+|+-+...+.++.++.|++.+++. -+.+|...+...|..+.+.++ ..+.+
T Consensus 9 v~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~~~~~~~ 71 (76)
T PF05036_consen 9 VGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLKKAAGPD 71 (76)
T ss_dssp EEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHHHHHTS-
T ss_pred EEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHhHhhCCC
Confidence 566666667788899999998874 677899899888888888877 55544
No 244
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=38.57 E-value=4.5e+02 Score=26.88 Aligned_cols=147 Identities=12% Similarity=0.109 Sum_probs=81.8
Q ss_pred CCCcchHH---HHHHHHHHHHHHcCCceE-EEEcccccccccCCceeecCCHHHHhhhhhcC--Cc-ceecccCCccHHH
Q 009559 183 GGLCPGLN---DVIRHIVITLEIYGVKNI-VGIPFGYRGFCDKELTEMPLSRKVVQNIHLSG--GS-LLGVSRGAPTVSE 255 (532)
Q Consensus 183 GG~cPGlN---avIr~iv~~l~~ygv~~V-~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~G--GS-iLGTSR~~~~~~~ 255 (532)
|+..||.+ .-+..+++.|.+.|++.| +|+..+-..-..+- ..-.+.+.++.+.... .+ +..-+|......+
T Consensus 9 G~q~~~~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 86 (266)
T cd07944 9 GGYVNNWDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGK--SAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDID 86 (266)
T ss_pred CccccCccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCC--ccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHH
Confidence 66777764 455677777888998633 34443322111110 1113456666666543 23 4444555432234
Q ss_pred HHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHHHHHhhh
Q 009559 256 IVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAH 335 (532)
Q Consensus 256 ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~a~~eA~ 335 (532)
-++...+.+++.+-+.=.-..+..+....+++++.|+.+.+- + - .+++ +-.++..+.++.+. ++
T Consensus 87 ~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~-~-~----------~a~~--~~~~~~~~~~~~~~-~~- 150 (266)
T cd07944 87 LLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN-L-M----------AISG--YSDEELLELLELVN-EI- 150 (266)
T ss_pred HHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE-E-E----------eecC--CCHHHHHHHHHHHH-hC-
Confidence 455557788988766656666777777778888887654432 2 1 1233 33555566665542 22
Q ss_pred hccccEEEEEecC
Q 009559 336 SAYHGIGIVKLMG 348 (532)
Q Consensus 336 S~~~~V~vVevMG 348 (532)
. ..+|.+.-+.|
T Consensus 151 g-~~~i~l~DT~G 162 (266)
T cd07944 151 K-PDVFYIVDSFG 162 (266)
T ss_pred C-CCEEEEecCCC
Confidence 2 35677887777
No 245
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=38.12 E-value=43 Score=29.60 Aligned_cols=24 Identities=42% Similarity=1.025 Sum_probs=16.2
Q ss_pred cE-EEEEeCCCCcchHHHHHHHHHHHHH
Q 009559 175 VK-AAIVTCGGLCPGLNDVIRHIVITLE 201 (532)
Q Consensus 175 ~k-iaIvt~GG~cPGlNavIr~iv~~l~ 201 (532)
++ ||.+|||| ||| ..+--++..|.
T Consensus 28 v~viaf~tCGg-CpG--rlvpn~~k~lk 52 (101)
T COG5561 28 VRVIAFITCGG-CPG--RLVPNQIKQLK 52 (101)
T ss_pred EEEEEEEEcCC-CCc--chhHHHHHHHh
Confidence 65 59999998 899 44444555554
No 246
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=37.95 E-value=4.1e+02 Score=28.67 Aligned_cols=153 Identities=18% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCcEEEEeCChhhH---HHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHH
Q 009559 253 VSEIVDSMEERGINMLFVLGGNGTH---AGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINS 329 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGdGT~---~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~ 329 (532)
.+.|.+.+++++-+.++|+..--+. .....+.++++++- +++|+.|+ .++..+ +++-||+.|++...+.+..
T Consensus 75 ~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~-~~~vi~v~---t~gf~g-~~~~G~~~a~~~l~~~l~~ 149 (410)
T cd01968 75 YKAILEIIERYHPKAVFVYSTCVVALIGDDIDAVCKTASEKF-GIPVIPVH---SPGFVG-NKNLGNKLACEALLDHVIG 149 (410)
T ss_pred HHHHHHHHHhCCCCEEEEECCCchhhhccCHHHHHHHHHHhh-CCCEEEEE---CCCccc-ChhHHHHHHHHHHHHHhcC
Q ss_pred HHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccCceEE-Eeeccccch
Q 009559 330 AYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVV-CVAEGAGQS 408 (532)
Q Consensus 330 a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg~~VV-VVAEGag~~ 408 (532)
-.......++. +-+|++..+.-+ ++.|++.+++.|.-++ +...+..-+
T Consensus 150 ~~~~~~~~~~~--------------------------VNiig~~~~~~d-----~~el~~lL~~~Gl~v~~~~~~~~s~e 198 (410)
T cd01968 150 TEEPEPLTPYD--------------------------INLIGEFNVAGE-----LWGVKPLLEKLGIRVLASITGDSRVD 198 (410)
T ss_pred CCCcccCCCCc--------------------------EEEECCCCCccc-----HHHHHHHHHHcCCeEEEEeCCCCCHH
Q ss_pred hhcccccccCCCCccc-cchHHHHHHHHHHHHHhcCcce
Q 009559 409 LIKKTNATDASGNIVL-GDVGVLIQQETKKYFKEIGVPI 446 (532)
Q Consensus 409 l~~~~~~~DasGn~~l-~dIg~~L~~~I~~~f~~~g~~~ 446 (532)
-+.+... |.=|..+ ...+..+++.++++| |++.
T Consensus 199 ei~~~~~--A~lniv~~~~~~~~~a~~L~~~f---Gip~ 232 (410)
T cd01968 199 EIRRAHR--AKLNVVQCSKSMIYLARKMEEKY---GIPY 232 (410)
T ss_pred HHHhhhh--CcEEEEEchhHHHHHHHHHHHHh---CCCe
No 247
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=37.50 E-value=95 Score=31.53 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=27.6
Q ss_pred CcEEEEEeCCCCcchHHH---HHHHHHHHHHHcCCceEEEE
Q 009559 174 EVKAAIVTCGGLCPGLND---VIRHIVITLEIYGVKNIVGI 211 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNa---vIr~iv~~l~~ygv~~V~Gi 211 (532)
.+||||++ ||+.|=... ..+.+...|...|++ +.-+
T Consensus 4 ~~~v~~~~-g~~~~~~~~~~~s~~~i~~al~~~g~~-v~~i 42 (304)
T PRK01372 4 FGKVAVLM-GGTSAEREVSLNSGAAVLAALREAGYD-AHPI 42 (304)
T ss_pred CcEEEEEe-CCCCCCceEeHHhHHHHHHHHHHCCCE-EEEE
Confidence 45899777 778887777 778888888889984 5544
No 248
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=36.96 E-value=3.9e+02 Score=25.65 Aligned_cols=46 Identities=4% Similarity=0.060 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeeccc
Q 009559 253 VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTI 303 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTI 303 (532)
..++.+.+..+++|++++...+.... .+.+.+++. +++||.+=..+
T Consensus 45 ~~~~~~~l~~~~vdgiii~~~~~~~~---~~~~~~~~~--~ipvv~i~~~~ 90 (270)
T cd01545 45 AERVRALLQRSRVDGVILTPPLSDNP---ELLDLLDEA--GVPYVRIAPGT 90 (270)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCcc---HHHHHHHhc--CCCEEEEecCC
Confidence 34677788889999999998874322 222333333 46677664433
No 249
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=36.69 E-value=53 Score=37.03 Aligned_cols=83 Identities=22% Similarity=0.336 Sum_probs=50.5
Q ss_pred CcEEEEeCChhhHHHHHHHH--HHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHHHHHhhhhccc---
Q 009559 265 INMLFVLGGNGTHAGANAIH--NECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYH--- 339 (532)
Q Consensus 265 Id~L~vIGGdGT~~gA~~L~--ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~a~~eA~S~~~--- 339 (532)
+|+++|-||.|.--..-+|. +++|+++ |+..|| |+|++.|+=+.++.+..+. +|.|+.-
T Consensus 344 ~dgIlVPGGFG~RG~eGkI~Ai~yAREn~--iP~lGI-------------ClGmQ~aviE~ARnv~Gl~-~AnS~Efdp~ 407 (533)
T COG0504 344 VDGILVPGGFGYRGVEGKIAAIRYARENN--IPFLGI-------------CLGMQLAVIEFARNVLGLE-GANSTEFDPD 407 (533)
T ss_pred CCEEEeCCCCCcCchHHHHHHHHHHHhcC--CCEEEE-------------chhHHHHHHHHHHHhcCCc-cCcccccCCC
Confidence 99999999999542233333 5666543 556665 9999999988888666543 4444311
Q ss_pred -cEEEEEecCCCccHHHHHHhHhcC
Q 009559 340 -GIGIVKLMGRSSGYIAMHASLASG 363 (532)
Q Consensus 340 -~V~vVevMGR~sG~LA~~aaLAsg 363 (532)
.--||.+|.-..+---+-.++--|
T Consensus 408 t~~pVv~l~~eq~~~~~lGGTmRLG 432 (533)
T COG0504 408 TKYPVVDLMPEQKDVVDLGGTMRLG 432 (533)
T ss_pred CCCceEEeccccccCCcCCceeecc
Confidence 123566666554443344444444
No 250
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=36.61 E-value=2.6e+02 Score=29.37 Aligned_cols=96 Identities=13% Similarity=0.169 Sum_probs=58.8
Q ss_pred HHHHHHHH-HcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccC---CccHHHHHHHHHHhCCcEEE
Q 009559 194 RHIVITLE-IYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRG---APTVSEIVDSMEERGINMLF 269 (532)
Q Consensus 194 r~iv~~l~-~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~---~~~~~~ivd~L~~~gId~L~ 269 (532)
..++.++. ..+.++|.-+...+. +-. .+.....+.+...|+.+.+..+. ..|....+..|++.+-|.+|
T Consensus 149 ~~~~~~~~~~~~~k~va~i~~d~~--~g~-----~~~~~~~~~~~~~G~~v~~~~~~~~g~~D~~~~v~~l~~~~~d~v~ 221 (369)
T PRK15404 149 PTAAKYILEKVKPKRIAVLHDKQQ--YGE-----GLARSVKDGLKKAGANVVFFEGITAGDKDFSALIAKLKKENVDFVY 221 (369)
T ss_pred HHHHHHHHHhcCCCEEEEEeCCCc--hhH-----HHHHHHHHHHHHcCCEEEEEEeeCCCCCchHHHHHHHHhcCCCEEE
Confidence 44556553 447766655544321 111 11223345567788888877654 35788899999999999987
Q ss_pred EeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 270 VLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 270 vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
+.| .+. ..+. +.+.+++.|++.++++.
T Consensus 222 ~~~-~~~-~~~~-~~k~~~~~G~~~~~i~~ 248 (369)
T PRK15404 222 YGG-YHP-EMGQ-ILRQAREAGLKTQFMGP 248 (369)
T ss_pred ECC-Cch-HHHH-HHHHHHHCCCCCeEEec
Confidence 654 333 2233 44777888888777643
No 251
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=36.45 E-value=79 Score=32.21 Aligned_cols=77 Identities=17% Similarity=0.290 Sum_probs=48.4
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHH
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSE 255 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ 255 (532)
||||+..+ .-|.++++++++...|...|+.. .++. +. ..-+.+......+
T Consensus 1 ~v~i~~~~-~~~~~~~~~~gf~~~L~~~g~~~-------------~~~~-~~---------------~~~a~~d~~~~~~ 50 (294)
T PF04392_consen 1 KVGILQFI-SHPALDDIVRGFKDGLKELGYDE-------------KNVE-IE---------------YKNAEGDPEKLRQ 50 (294)
T ss_dssp EEEEEESS---HHHHHHHHHHHHHHHHTT--C-------------CCEE-EE---------------EEE-TT-HHHHHH
T ss_pred CeEEEEEe-ccHHHHHHHHHHHHHHHHcCCcc-------------ccEE-EE---------------EecCCCCHHHHHH
Confidence 68888865 77899999999999998888641 1111 10 0011122234677
Q ss_pred HHHHHHHhCCcEEEEeCChhhHHHHHH
Q 009559 256 IVDSMEERGINMLFVLGGNGTHAGANA 282 (532)
Q Consensus 256 ivd~L~~~gId~L~vIGGdGT~~gA~~ 282 (532)
+++.|...+.|.++.+|.+-++..+..
T Consensus 51 ~~~~l~~~~~DlIi~~gt~aa~~~~~~ 77 (294)
T PF04392_consen 51 IARKLKAQKPDLIIAIGTPAAQALAKH 77 (294)
T ss_dssp HHHHHCCTS-SEEEEESHHHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEeCcHHHHHHHHh
Confidence 888899999999999988776654443
No 252
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=36.42 E-value=5.9e+02 Score=28.38 Aligned_cols=185 Identities=12% Similarity=0.087 Sum_probs=95.7
Q ss_pred HHHHHHHHHHcCCceEEEEccc-ccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHHHHHHHH--hCCcEEE
Q 009559 193 IRHIVITLEIYGVKNIVGIPFG-YRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEIVDSMEE--RGINMLF 269 (532)
Q Consensus 193 Ir~iv~~l~~ygv~~V~Gi~~G-y~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ivd~L~~--~gId~L~ 269 (532)
-..+++.|..+|+++|||+.++ ...|++. +. .+=.++ ++|.+....-+.+..-+ -..-.++
T Consensus 15 a~~l~~~L~~~GV~~vFgiPG~~~~~l~da--------------l~-~~i~~i-~~~hE~~A~~~Adgyar~tg~~~v~~ 78 (530)
T PRK07092 15 RDATIDLLRRFGITTVFGNPGSTELPFLRD--------------FP-DDFRYV-LGLQEAVVVGMADGYAQATGNAAFVN 78 (530)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCcchHHHHH--------------Hh-hcCCEE-EEccHHHHHHHHHHHHHHhCCceEEE
Confidence 3567888899999999999887 4444432 11 111223 34544433334443333 2355555
Q ss_pred EeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCcc---CC-------------hhhHHHHHHHHHHHHHHh
Q 009559 270 VLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKT---FG-------------FDTAVEEAQRAINSAYIE 333 (532)
Q Consensus 270 vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~S---fG-------------FdTAv~~a~~aI~~a~~e 333 (532)
+-.|-|.......|++... -+++|+.|-.+...+..+.+.- +. --+..+.+.+.|+.+...
T Consensus 79 vt~gpG~~N~~~gia~A~~---~~~Pvl~i~g~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~ 155 (530)
T PRK07092 79 LHSAAGVGNAMGNLFTAFK---NHTPLVITAGQQARSILPFEPFLAAVQAAELPKPYVKWSIEPARAEDVPAAIARAYHI 155 (530)
T ss_pred eccCchHHHHHHHHHHHhh---cCCCEEEEecCCcccccCccchhcccCHHHhhcccccceeecCCHHHHHHHHHHHHHH
Confidence 6678887777777775433 2577887766655443221110 00 002245566677777777
Q ss_pred hhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccCceEEEeecccc
Q 009559 334 AHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVVCVAEGAG 406 (532)
Q Consensus 334 A~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg~~VVVVAEGag 406 (532)
|.+.+.|-..+++- ++ +. .+ .++....+............++.+.+.+.+-..-+|++.-|+.
T Consensus 156 A~~~~~GPv~l~iP-~d---~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~AkrPvIl~G~g~~ 218 (530)
T PRK07092 156 AMQPPRGPVFVSIP-YD---DW----DQ--PAEPLPARTVSSAVRPDPAALARLGDALDAARRPALVVGPAVD 218 (530)
T ss_pred HhcCCCCcEEEEcc-HH---Hh----hC--cccccccCCCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCcc
Confidence 76655554455543 11 10 00 0111011111111111123456666677776778888877774
No 253
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=36.25 E-value=1.3e+02 Score=32.32 Aligned_cols=177 Identities=20% Similarity=0.300 Sum_probs=109.1
Q ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc-
Q 009559 173 EEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP- 251 (532)
Q Consensus 173 ~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~- 251 (532)
+.+=|||.--|| ++-...|..+.++..+|.+ | -.|++-|++++ ++ +..+.++.|+=|---|-.+
T Consensus 69 e~liIgia~~gG---~~~~~~~~~i~eAl~~G~n-V---vsglh~~ls~d-------p~-~~k~A~~~G~rl~dvR~p~~ 133 (339)
T COG3367 69 EALIIGIAPPGG---VLPESWREYIVEALEAGMN-V---VSGLHSFLSDD-------PE-FVKLAERTGVRLDDVRKPPL 133 (339)
T ss_pred ceEEEEeecCCC---cCcHHHHHHHHHHHHhCch-h---hhhhHHHhhcC-------hH-HHHHHHHcCCeeEeeccCcc
Confidence 456789999886 5667888888888899984 4 34555555443 33 3444555565333334333
Q ss_pred cHHHHH-HHHHHhCCcEEEEeCCh---hhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCCh--hh-HHHHHH
Q 009559 252 TVSEIV-DSMEERGINMLFVLGGN---GTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGF--DT-AVEEAQ 324 (532)
Q Consensus 252 ~~~~iv-d~L~~~gId~L~vIGGd---GT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGF--dT-Av~~a~ 324 (532)
+..... .+..+-++.-+++.|-| |-+.++..|.+.++.+|++..+++==-| -+.. .+-|| |. -+.+++
T Consensus 134 ~l~~~~tG~~~k~~a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTgqt---gil~--~~~gvvvdav~~DfaA 208 (339)
T COG3367 134 DLEYLCTGMARKVDAKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATGQT---GILI--ADDGVVVDAVVMDFAA 208 (339)
T ss_pred chhhhccCcccccCCcEEEEeccccccchhHHHHHHHHHHHHhCCccceEecCce---eeEE--ecCceEecchhHHHHH
Confidence 444444 56666678899999987 7789999999999999988777753222 1111 11121 11 345677
Q ss_pred HHHHHHHHhhhhccccEEEEEecCC--CccHHHHHHhHhc-CCccEEEc
Q 009559 325 RAINSAYIEAHSAYHGIGIVKLMGR--SSGYIAMHASLAS-GQIDICLI 370 (532)
Q Consensus 325 ~aI~~a~~eA~S~~~~V~vVevMGR--~sG~LA~~aaLAs-g~ad~~LI 370 (532)
-++..+..++....+-|.|||=.|. |.+| -...++-- -.+|.+++
T Consensus 209 Gave~~v~~~~e~~~Dii~VEGQgsl~HP~y-~vtl~il~gs~PDavvL 256 (339)
T COG3367 209 GAVESAVYEAEEKNPDIIFVEGQGSLTHPAY-GVTLGILHGSAPDAVVL 256 (339)
T ss_pred HHHHHHHHHhhhcCCCEEEEeccccccCCCc-ccchhhhcCCCCCeEEE
Confidence 7778877777653345889998774 4444 22222221 23776554
No 254
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=35.67 E-value=3.7e+02 Score=26.14 Aligned_cols=86 Identities=16% Similarity=0.092 Sum_probs=52.2
Q ss_pred EEEEEeCCC-CcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceeccc-CCccH
Q 009559 176 KAAIVTCGG-LCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSR-GAPTV 253 (532)
Q Consensus 176 kiaIvt~GG-~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR-~~~~~ 253 (532)
|||+++-.- .-|-.+.++.++-+.+..+|+. +.-+ .+.. .....
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~~g~~-v~~~---------------------------------~~~~~~~~~~ 46 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDLGVD-VEYR---------------------------------GPETFDVADM 46 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHHhCCE-EEEE---------------------------------CCCCCCHHHH
Confidence 577777554 4688888888888888777763 3210 0111 11123
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
.+.++.|...++|++++.+.+.+... ..+ +.++++ +++||.+
T Consensus 47 ~~~i~~l~~~~vdgiii~~~~~~~~~-~~l-~~~~~~--~ipvV~~ 88 (271)
T cd06312 47 ARLIEAAIAAKPDGIVVTIPDPDALD-PAI-KRAVAA--GIPVISF 88 (271)
T ss_pred HHHHHHHHHhCCCEEEEeCCChHHhH-HHH-HHHHHC--CCeEEEe
Confidence 45777888899999999997754211 122 334444 4667765
No 255
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=35.44 E-value=55 Score=31.46 Aligned_cols=50 Identities=26% Similarity=0.416 Sum_probs=34.0
Q ss_pred ccCCccHHHHHHHHHHhCCcEEEEeCCh-hhHHHHHHHHHHHHhcCCCceEeeeeccc
Q 009559 247 SRGAPTVSEIVDSMEERGINMLFVLGGN-GTHAGANAIHNECRKRRMKVAVVGVPKTI 303 (532)
Q Consensus 247 SR~~~~~~~ivd~L~~~gId~L~vIGGd-GT~~gA~~L~ee~~kr~~~I~VIGIPKTI 303 (532)
-|......++++..++++++.++.+.|- +.+.++ ++- ....+|||||-..
T Consensus 36 HRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgv--va~-----~t~~PVIgvP~~~ 86 (156)
T TIGR01162 36 HRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGM--VAA-----LTPLPVIGVPVPS 86 (156)
T ss_pred ccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHH--HHh-----ccCCCEEEecCCc
Confidence 3666678899999999999877766554 223332 222 2468999999754
No 256
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=35.26 E-value=2.5e+02 Score=28.08 Aligned_cols=61 Identities=16% Similarity=0.285 Sum_probs=42.5
Q ss_pred hhhcCCcceecccC---CccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 236 IHLSGGSLLGVSRG---APTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 236 i~~~GGSiLGTSR~---~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
+...|++++.+... ..+....+..+++.+.+.+++.+..+.+ ..+.+.+++.|+++.+++.
T Consensus 160 ~~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~d~i~~~~~~~~~---~~~~~~~~~~g~~~~i~~~ 223 (334)
T cd06347 160 FKKLGGEIVAEETFNAGDTDFSAQLTKIKAKNPDVIFLPGYYTEV---GLIAKQARELGIKVPILGG 223 (334)
T ss_pred HHHcCCEEEEEEEecCCCCcHHHHHHHHHhcCCCEEEEcCchhhH---HHHHHHHHHcCCCCcEEec
Confidence 44467788766443 3477888899999999998887766533 4455677777877766653
No 257
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=35.13 E-value=7e+02 Score=28.08 Aligned_cols=189 Identities=17% Similarity=0.198 Sum_probs=104.0
Q ss_pred HHHHHHHHHHcCCceEEEEccc-ccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHHHHHHHHh--CCcEEE
Q 009559 193 IRHIVITLEIYGVKNIVGIPFG-YRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEIVDSMEER--GINMLF 269 (532)
Q Consensus 193 Ir~iv~~l~~ygv~~V~Gi~~G-y~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ivd~L~~~--gId~L~ 269 (532)
-..+++.|...|+++|||+.++ ..+|++ .+...+=+++. +|......-+.+..-+. .+-.++
T Consensus 11 ~~~l~~~L~~~Gv~~vFgipG~~~~~l~~--------------al~~~~i~~v~-~~hE~~A~~~Adgyar~tg~~~v~~ 75 (561)
T PRK06048 11 ARAIIKCLEKEGVEVIFGYPGGAIIPVYD--------------ELYDSDLRHIL-VRHEQAAAHAADGYARATGKVGVCV 75 (561)
T ss_pred HHHHHHHHHHcCCCEEEECCCcchHHHHH--------------HHhhCCCeEEE-eccHHHHHHHHHHHHHHhCCCeEEE
Confidence 4567888889999999998886 223332 22222333443 35444333344433332 488888
Q ss_pred EeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCC------CCcc-----C-Ch---hhHHHHHHHHHHHHHHhh
Q 009559 270 VLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILL------MDKT-----F-GF---DTAVEEAQRAINSAYIEA 334 (532)
Q Consensus 270 vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~------tD~S-----f-GF---dTAv~~a~~aI~~a~~eA 334 (532)
+--|=|.......|++... -+++|+.|-.+.+.+..+ +|.. + -| -+..+.+.+.++.+...|
T Consensus 76 ~t~GpG~~n~~~gl~~A~~---~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s~~v~~~~~i~~~i~~A~~~A 152 (561)
T PRK06048 76 ATSGPGATNLVTGIATAYM---DSVPIVALTGQVPRSMIGNDAFQEADITGITMPITKHNYLVQDAKDLPRIIKEAFHIA 152 (561)
T ss_pred ECCCCcHHHHHHHHHHHhh---cCCCEEEEeccCCccccCCCCccccchhhhccCcceEEEEeCCHHHHHHHHHHHHHHH
Confidence 8889999999888887543 357888886665544221 1110 0 11 123466777888887788
Q ss_pred hhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCC-C-CChhHHHHHHHHHHhccCceEEEeecccc
Q 009559 335 HSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFN-L-HGPNGVLRHLKYLIETKGSAVVCVAEGAG 406 (532)
Q Consensus 335 ~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~-l-eg~~~ll~~lk~~~~~kg~~VVVVAEGag 406 (532)
.+.+.|-..+++-- + +.. ..+....+.. .|-.++. . ......++.+-+++.+-.+-+|++..|+.
T Consensus 153 ~~~~~GPV~l~iP~-d---v~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~a~~L~~AkrPvil~G~g~~ 219 (561)
T PRK06048 153 STGRPGPVLIDLPK-D---VTT-AEIDFDYPDK--VELRGYKPTYKGNPQQIKRAAELIMKAERPIIYAGGGVI 219 (561)
T ss_pred hcCCCCeEEEecCh-h---hhh-cccccccCcc--cccccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 77666766777642 1 111 0000000000 0000110 0 01123566666777766778888887774
No 258
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=35.12 E-value=7.1e+02 Score=28.14 Aligned_cols=185 Identities=17% Similarity=0.178 Sum_probs=102.5
Q ss_pred HHHHHHHHHHcCCceEEEEccccc-ccccCCceeecCCHHHHhhhhhc-CCcceecccCCccHHHHHHHHHHh--CCcEE
Q 009559 193 IRHIVITLEIYGVKNIVGIPFGYR-GFCDKELTEMPLSRKVVQNIHLS-GGSLLGVSRGAPTVSEIVDSMEER--GINML 268 (532)
Q Consensus 193 Ir~iv~~l~~ygv~~V~Gi~~Gy~-GL~~~~~~~i~Lt~~~V~~i~~~-GGSiLGTSR~~~~~~~ivd~L~~~--gId~L 268 (532)
=..+++.|..+|+++|||+.+++. .|++ .+... +=.++. +|......-+.+..-+. ++-.+
T Consensus 13 ~~~i~~~L~~~Gv~~vFgipG~~~~~l~d--------------al~~~~~i~~i~-~rhE~~A~~~Adgyar~tg~~gv~ 77 (566)
T PRK07282 13 SDLVLETLRDLGVDTIFGYPGGAVLPLYD--------------AIYNFEGIRHIL-ARHEQGALHEAEGYAKSTGKLGVA 77 (566)
T ss_pred HHHHHHHHHHcCCCEEEecCCcchHHHHH--------------HHhhcCCceEEE-ecCHHHHHHHHHHHHHHhCCCeEE
Confidence 356788889999999999987732 3332 22222 224443 34444333344433332 48889
Q ss_pred EEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCC------C----------ccCChhhHHHHHHHHHHHHHH
Q 009559 269 FVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLM------D----------KTFGFDTAVEEAQRAINSAYI 332 (532)
Q Consensus 269 ~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~t------D----------~SfGFdTAv~~a~~aI~~a~~ 332 (532)
++.-|=|.......|++... -+++|+.|-.....+-.+. | +|. .-+..+.+.+.++.+..
T Consensus 78 ~~t~GPG~~n~~~gla~A~~---~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s~-~v~~~~~~~~~l~~A~~ 153 (566)
T PRK07282 78 VVTSGPGATNAITGIADAMS---DSVPLLVFTGQVARAGIGKDAFQEADIVGITMPITKYNY-QIRETADIPRIITEAVH 153 (566)
T ss_pred EECCCccHHHHHHHHHHHhh---cCCCEEEEecccccccCCCCCccccChhchhcCCCceeE-EcCCHHHHHHHHHHHHH
Confidence 99999999988888886433 2577887765544332211 1 111 11234567778888877
Q ss_pred hhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCC---C--CCCChhHHHHHHHHHHhccCceEEEeecccc
Q 009559 333 EAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESP---F--NLHGPNGVLRHLKYLIETKGSAVVCVAEGAG 406 (532)
Q Consensus 333 eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~p---f--~leg~~~ll~~lk~~~~~kg~~VVVVAEGag 406 (532)
.|.+.+.|-..+++--- -....+ +....|+.+ + ........++.+-+++.+-+.-+|++.-|+.
T Consensus 154 ~A~~~~~GPV~l~iP~D---v~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~ 222 (566)
T PRK07282 154 IATTGRPGPVVIDLPKD---VSALET-------DFIYDPEVNLPSYQPTLEPNDMQIKKILKQLSKAKKPVILAGGGIN 222 (566)
T ss_pred HHhcCCCCeEEEeCChh---hhhhhh-------cccccccccccCCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCcC
Confidence 88776556556665321 111111 100111111 0 0011134566777777777778888887773
No 259
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=34.94 E-value=4.2e+02 Score=25.46 Aligned_cols=86 Identities=9% Similarity=0.105 Sum_probs=50.6
Q ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHH
Q 009559 177 AAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEI 256 (532)
Q Consensus 177 iaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~i 256 (532)
|||+...-.-|=.+.++.++-..+..+|+. ++- +-+........+.
T Consensus 2 igvi~~~~~~~~~~~~~~gi~~~~~~~g~~-~~~---------------------------------~~~~~~~~~~~~~ 47 (269)
T cd06275 2 IGMLVTTSTNPFFAEVVRGVEQYCYRQGYN-LIL---------------------------------CNTEGDPERQRSY 47 (269)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCCE-EEE---------------------------------EeCCCChHHHHHH
Confidence 667766555666777777777777777763 320 0011112223467
Q ss_pred HHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeec
Q 009559 257 VDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPK 301 (532)
Q Consensus 257 vd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPK 301 (532)
++.|.++++|++++.+.+........+. .. .+++||.+-.
T Consensus 48 i~~l~~~~vdgiii~~~~~~~~~~~~l~---~~--~~ipvV~i~~ 87 (269)
T cd06275 48 LRMLAQKRVDGLLVMCSEYDQPLLAMLE---RY--RHIPMVVMDW 87 (269)
T ss_pred HHHHHHcCCCEEEEecCCCChHHHHHHH---hc--CCCCEEEEec
Confidence 7888999999999999875432222221 11 2577775533
No 260
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=34.76 E-value=75 Score=37.96 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHH
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIH 284 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ 284 (532)
.++++++.+++.++|.++-|||--.+..|..++
T Consensus 527 ~v~~~~~~~~~~~~D~IIaiGGGSviD~AK~ia 559 (862)
T PRK13805 527 TVRKGAELMRSFKPDTIIALGGGSPMDAAKIMW 559 (862)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHH
Confidence 467889999999999999999999999988876
No 261
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=34.63 E-value=6.5e+02 Score=28.00 Aligned_cols=149 Identities=18% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCcEEEEeC-------ChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHH
Q 009559 253 VSEIVDSMEERGINMLFVLG-------GNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQR 325 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIG-------GdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~ 325 (532)
.+.|.+.+++++-+.++|+. ||+--.-+..+.++ .+++||.|+.. +..+ +++-||+.|++...+
T Consensus 108 ~~~I~ei~~~~~P~~I~V~tTC~~~lIGdDi~~v~~~~~~~-----~~~pvi~v~t~---Gf~g-~~~~G~~~a~~al~~ 178 (475)
T PRK14478 108 FKAIDEIIEKYAPPAVFVYQTCVVALIGDDIDAVCKRAAEK-----FGIPVIPVNSP---GFVG-NKNLGNKLAGEALLD 178 (475)
T ss_pred HHHHHHHHHhcCCCEEEEeCCChHHHhccCHHHHHHHHHHh-----hCCCEEEEECC---Cccc-chhhhHHHHHHHHHH
Q ss_pred HHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccCceEE-Eeecc
Q 009559 326 AINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVV-CVAEG 404 (532)
Q Consensus 326 aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg~~VV-VVAEG 404 (532)
.+-.-........+. +-||++..+.-+ ++.|++.+++.|.-++ +...+
T Consensus 179 ~l~~~~~~~~~~~~~--------------------------VNiiG~~~~~gd-----~~elk~lL~~~Gl~v~~~~~~~ 227 (475)
T PRK14478 179 HVIGTVEPEDTTPYD--------------------------INILGEYNLAGE-----LWQVKPLLDRLGIRVVACITGD 227 (475)
T ss_pred HHhccCCccCCCCCe--------------------------EEEEeCCCCCCC-----HHHHHHHHHHcCCeEEEEcCCC
Q ss_pred ccchhhcccccccCCCCccc-cchHHHHHHHHHHHHHhcCcce
Q 009559 405 AGQSLIKKTNATDASGNIVL-GDVGVLIQQETKKYFKEIGVPI 446 (532)
Q Consensus 405 ag~~l~~~~~~~DasGn~~l-~dIg~~L~~~I~~~f~~~g~~~ 446 (532)
..-+-+.. ...|.-|..+ ...+..+++.++++| |++.
T Consensus 228 ~s~eei~~--~~~A~lniv~~~~~~~~~A~~L~erf---GiP~ 265 (475)
T PRK14478 228 ARYDDVAS--AHRARANMMVCSGAMINLARKMEERY---GIPF 265 (475)
T ss_pred CCHHHHHh--cccCcEEEEEcHHHHHHHHHHHHHHh---CCCE
No 262
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=34.54 E-value=91 Score=32.54 Aligned_cols=84 Identities=17% Similarity=0.262 Sum_probs=52.8
Q ss_pred EEEEEeCCCCcchH-HHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHH
Q 009559 176 KAAIVTCGGLCPGL-NDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVS 254 (532)
Q Consensus 176 kiaIvt~GG~cPGl-NavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~ 254 (532)
+|+||-..+.++.. -+.+...++.|+..|++ |.-..+=+ . .-+ .+ +.-.....+
T Consensus 2 ~I~ivAPS~~~~~~~~~~~~~~~~~L~~~G~~-v~~~~~~~------------------~----~~~-~~-ag~~~~Ra~ 56 (308)
T cd07062 2 TIAVVSPSSGIPGELPHRLERAKKRLENLGFE-VVEGPNAL------------------K----GDK-YL-SASPEERAE 56 (308)
T ss_pred eEEEEeCCCCCcccCHHHHHHHHHHHHhCCCE-EEEecccc------------------c----ccc-cc-cCCHHHHHH
Confidence 68899877776643 56677777778888884 42111100 0 001 11 111112357
Q ss_pred HHHHHHHHhCCcEEEE-eCChhhHHHHHHHH
Q 009559 255 EIVDSMEERGINMLFV-LGGNGTHAGANAIH 284 (532)
Q Consensus 255 ~ivd~L~~~gId~L~v-IGGdGT~~gA~~L~ 284 (532)
++.+.+.+-+|+++++ .||+|+++-...|-
T Consensus 57 dL~~a~~Dp~i~aI~~~rGG~g~~rlL~~lD 87 (308)
T cd07062 57 ELMAAFADPSIKAIIPTIGGDDSNELLPYLD 87 (308)
T ss_pred HHHHHhcCCCCCEEEECCcccCHhhhhhhcC
Confidence 8889999999999886 69999998877664
No 263
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=34.17 E-value=6.4e+02 Score=27.37 Aligned_cols=151 Identities=20% Similarity=0.280 Sum_probs=77.1
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHH---HHHHHHHHHhc---CCCceEeeeecccccCCCCCCccCChhhHHHHHHHHH
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAG---ANAIHNECRKR---RMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAI 327 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~g---A~~L~ee~~kr---~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI 327 (532)
+.|.+.+++++-+.++|+..--+--- ...+.++++++ ..+++||.|+- .+..+ .+.-||+.|++...+.+
T Consensus 71 ~~i~~~~~~~~p~~I~v~~tC~~~liGdDi~~v~~~~~~~~~~~~~~~vi~v~t---pgf~g-~~~~G~~~a~~al~~~~ 146 (428)
T cd01965 71 EALKNLLSRYKPDVIGVLTTCLTETIGDDVAGFIKEFRAEGPEPADFPVVYAST---PSFKG-SHETGYDNAVKAIIEQL 146 (428)
T ss_pred HHHHHHHHhcCCCEEEEECCcchhhcCCCHHHHHHHHHhhccCCCCCeEEEeeC---CCCCC-cHHHHHHHHHHHHHHHH
Confidence 44556667788999998875433322 12233444443 34677777643 12222 23346666555444332
Q ss_pred HHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccCceEEEeec----
Q 009559 328 NSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVVCVAE---- 403 (532)
Q Consensus 328 ~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg~~VVVVAE---- 403 (532)
.. ... ....-.+-+|+..+.+.. -++.|++.+++.|.-++++..
T Consensus 147 ~~---~~~-------------------------~~~~~~VNlig~~~~~~~----d~~el~~lL~~~Gl~v~~~~~~s~~ 194 (428)
T cd01965 147 AK---PSE-------------------------VKKNGKVNLLPGFPLTPG----DVREIKRILEAFGLEPIILPDLSDS 194 (428)
T ss_pred hc---ccC-------------------------CCCCCeEEEECCCCCCcc----CHHHHHHHHHHcCCCEEEecCcccc
Confidence 21 000 011123455555444321 246788888888877766542
Q ss_pred ---------------cccchhhcccccccCCCCccccc-hHHHHHHHHHHHHHhcCcc
Q 009559 404 ---------------GAGQSLIKKTNATDASGNIVLGD-VGVLIQQETKKYFKEIGVP 445 (532)
Q Consensus 404 ---------------Gag~~l~~~~~~~DasGn~~l~d-Ig~~L~~~I~~~f~~~g~~ 445 (532)
|..-+-+. ...+|.=|..+.. .+..+++.++++| |++
T Consensus 195 ~d~~~~~~~~~~~~gg~~~e~i~--~~~~A~lniv~~~~~~~~~a~~L~e~~---GiP 247 (428)
T cd01965 195 LDGHLTDGYSPLTKGGTTLEEIR--DAGNAKATIALGEYSGRKAAKALEEKF---GVP 247 (428)
T ss_pred cCCCCCCCccccCCCCCcHHHHH--HhccCcEEEEEChhhhHHHHHHHHHHH---CCC
Confidence 22211111 1234555666665 6777777777765 654
No 264
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=34.06 E-value=1.3e+02 Score=34.00 Aligned_cols=88 Identities=32% Similarity=0.369 Sum_probs=59.2
Q ss_pred ChhhHHHHHHHHHHHHHHhhhh---------ccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHH
Q 009559 315 GFDTAVEEAQRAINSAYIEAHS---------AYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLR 385 (532)
Q Consensus 315 GFdTAv~~a~~aI~~a~~eA~S---------~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~ 385 (532)
|=.|++++.++-.+--+++|+- ..|-|-+-.+-|..-.-+|+ |-||.+.+|++++-|---.|+- +-++
T Consensus 665 ~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRVal-aeLal~~PDvlILDEPTNNLDI--ESID 741 (807)
T KOG0066|consen 665 GEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVAL-AELALGGPDVLILDEPTNNLDI--ESID 741 (807)
T ss_pred cccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHH-HHHhcCCCCEEEecCCCCCcch--hhHH
Confidence 4468888887766555555543 23457788888887777764 5677777999988775433331 2456
Q ss_pred HHHHHHhccCceEEEeeccc
Q 009559 386 HLKYLIETKGSAVVCVAEGA 405 (532)
Q Consensus 386 ~lk~~~~~kg~~VVVVAEGa 405 (532)
.|.+.+.+.+-+||+|+--.
T Consensus 742 ALaEAIney~GgVi~VsHDe 761 (807)
T KOG0066|consen 742 ALAEAINEYNGGVIMVSHDE 761 (807)
T ss_pred HHHHHHHhccCcEEEEeccc
Confidence 66677777788999998654
No 265
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=34.05 E-value=2.7e+02 Score=27.92 Aligned_cols=101 Identities=13% Similarity=0.124 Sum_probs=59.4
Q ss_pred chHHHHHHHHHHHHH-HcCCceEEEEcccccccccCCceeecCCHHHH-hhhhhcCCcceecccCC---ccHHHHHHHHH
Q 009559 187 PGLNDVIRHIVITLE-IYGVKNIVGIPFGYRGFCDKELTEMPLSRKVV-QNIHLSGGSLLGVSRGA---PTVSEIVDSME 261 (532)
Q Consensus 187 PGlNavIr~iv~~l~-~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V-~~i~~~GGSiLGTSR~~---~~~~~ivd~L~ 261 (532)
|.-..-.+.++..+. .+++++|.-+...+. +-.. + .+.+ +.+...|.++.++-... .+...++..++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~--~g~~-----~-~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~ 187 (334)
T cd06342 116 ARDDQQGPAAAKYAVETLKAKKVAIIDDKTA--YGQG-----L-ADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIK 187 (334)
T ss_pred CCcHHHHHHHHHHHHHhcCCCEEEEEeCCcc--hhhH-----H-HHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHH
Confidence 444566666776653 567766654432211 0000 1 1222 23344677787765543 46888899999
Q ss_pred HhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEee
Q 009559 262 ERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVG 298 (532)
Q Consensus 262 ~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIG 298 (532)
+.+.+.+++.|... .+..+.+.+++.|+...+++
T Consensus 188 ~~~~~~vi~~~~~~---~~~~~~~~~~~~g~~~~~~~ 221 (334)
T cd06342 188 AANPDAVFFGGYYP---EAGPLVRQMRQLGLKAPFMG 221 (334)
T ss_pred hcCCCEEEEcCcch---hHHHHHHHHHHcCCCCcEEe
Confidence 99999888765332 23346677777787766665
No 266
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=34.02 E-value=53 Score=36.22 Aligned_cols=60 Identities=18% Similarity=0.431 Sum_probs=37.2
Q ss_pred cceecccCCccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeeccccc
Q 009559 242 SLLGVSRGAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDN 305 (532)
Q Consensus 242 SiLGTSR~~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDN 305 (532)
+++.|..-+ ..+..++.+.... |.++|.|||||.... +.-.+|+|+-..+|--+|.--||
T Consensus 96 ~Ivktd~~g-qak~l~e~~~t~~-Dii~VaGGDGT~~eV--VTGi~Rrr~~~~pv~~~P~G~~~ 155 (535)
T KOG4435|consen 96 DIVKTDNQG-QAKALAEAVDTQE-DIIYVAGGDGTIGEV--VTGIFRRRKAQLPVGFYPGGYDN 155 (535)
T ss_pred EEEecCcHH-HHHHHHHHhccCC-CeEEEecCCCcHHHh--hHHHHhcccccCceeeccCccch
Confidence 456554422 2344455555444 999999999998654 23345666666777777765554
No 267
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=34.00 E-value=35 Score=36.76 Aligned_cols=98 Identities=22% Similarity=0.352 Sum_probs=52.1
Q ss_pred CCCCcEEEEEeCCCCcchHH-HHHHHHHHHHHHcCC-----------ceEEEEccccccccc-CCceeecCCHHHHhhhh
Q 009559 171 KPEEVKAAIVTCGGLCPGLN-DVIRHIVITLEIYGV-----------KNIVGIPFGYRGFCD-KELTEMPLSRKVVQNIH 237 (532)
Q Consensus 171 ~p~~~kiaIvt~GG~cPGlN-avIr~iv~~l~~ygv-----------~~V~Gi~~Gy~GL~~-~~~~~i~Lt~~~V~~i~ 237 (532)
+-++.|||+||+||..|--| +=|.+.- +..||. .+..-++.||.--.- .+... -+.-+.+..+.
T Consensus 224 dLs~akIALVTtGGivPkgnPD~i~ss~--a~~~g~Y~I~~~~~l~~~~~~~~HgGYD~~~an~D~N~-v~PlD~LreL~ 300 (349)
T PF07355_consen 224 DLSKAKIALVTTGGIVPKGNPDRIESSS--ATKYGKYDISGMDDLSSDDYMTIHGGYDPAYANEDPNR-VFPLDRLRELE 300 (349)
T ss_pred cHHHCEEEEEeccCcccCCCCCccCCCC--CCCceeeeCcCcCCCCccceEeeccccChhHhccCCCe-eeeHHHHHHHH
Confidence 34578999999999999888 3332211 012221 123345556654442 22211 13334555555
Q ss_pred hcC--Cc----ceecccCC-------ccHHHHHHHHHHhCCcEEEEe
Q 009559 238 LSG--GS----LLGVSRGA-------PTVSEIVDSMEERGINMLFVL 271 (532)
Q Consensus 238 ~~G--GS----iLGTSR~~-------~~~~~ivd~L~~~gId~L~vI 271 (532)
..| |+ +.+|.=.+ ..-.+|++.|++.++|+++..
T Consensus 301 ~EG~IG~l~~~~yst~G~gt~~~~~~~~g~eIa~~Lk~dgVDAVILT 347 (349)
T PF07355_consen 301 KEGVIGSLAPYFYSTMGNGTAVANAKRFGPEIAKELKEDGVDAVILT 347 (349)
T ss_pred HcCCcccccCeeEEcCCCCccHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 554 21 12221111 134678899999999988763
No 268
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=33.73 E-value=5.7e+02 Score=28.19 Aligned_cols=165 Identities=16% Similarity=0.222 Sum_probs=90.2
Q ss_pred EEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccc-----------cCCc----eeecCCHHHHhhhhhcC--C
Q 009559 179 IVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFC-----------DKEL----TEMPLSRKVVQNIHLSG--G 241 (532)
Q Consensus 179 Ivt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~-----------~~~~----~~i~Lt~~~V~~i~~~G--G 241 (532)
|+++.|..|||.-+|+++++. |- .|+--.-=|--|+ ...+ ....++-+.++.-...+ +
T Consensus 86 i~~~p~VVpgi~~~I~~~T~~----gd-~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vk 160 (388)
T COG1168 86 IVFVPGVVPGISLAIRALTKP----GD-GVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVK 160 (388)
T ss_pred EEEcCcchHhHHHHHHHhCcC----CC-eeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCcc
Confidence 899999999999999999863 22 1222111111111 1100 01223555566444444 4
Q ss_pred cceeccc--------CCccHHHHHHHHHHhCCc-------EEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccC
Q 009559 242 SLLGVSR--------GAPTVSEIVDSMEERGIN-------MLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDND 306 (532)
Q Consensus 242 SiLGTSR--------~~~~~~~ivd~L~~~gId-------~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDND 306 (532)
.+|=++= ......+|.+-+++||+- +=++.+|. ++..+..+.+.++. ..|.+.+-=|| =+
T Consensus 161 l~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~-~h~~~a~ls~~~a~--~~it~~saSKt--FN 235 (388)
T COG1168 161 LFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGH-KHIPFASLSERFAD--NSITLTSASKT--FN 235 (388)
T ss_pred EEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCC-CccchhhcChhhhc--ceEEEeecccc--cc
Confidence 5554433 234678999999999874 44788887 66667777766532 22444444444 35
Q ss_pred CCCCCccCChhhHHHHHHHHHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcC
Q 009559 307 ILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASG 363 (532)
Q Consensus 307 I~~tD~SfGFdTAv~~a~~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg 363 (532)
++++..|-..-+-=+.=++..+.+.......++ .-|.+|..+|...|
T Consensus 236 laGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n----------~lg~~A~~aAY~~G 282 (388)
T COG1168 236 LAGLKCAYIIISNRELRAKFLKRLKRNGLHGPS----------ALGIIATEAAYNQG 282 (388)
T ss_pred chhhhheeEEecCHHHHHHHHHHHHHhcCCCCc----------hHHHHHHHHHHHhc
Confidence 555554443333222223333433322222222 23889999999887
No 269
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=33.67 E-value=4.3e+02 Score=25.22 Aligned_cols=38 Identities=8% Similarity=-0.005 Sum_probs=22.8
Q ss_pred HHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 256 IVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 256 ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
+.+.+.+.++|++++.+.+.... .+ +++++. +++||.+
T Consensus 51 ~~~~~~~~~vdgiii~~~~~~~~---~~-~~~~~~--~ipvV~~ 88 (268)
T cd06271 51 YRRLVESGLVDGVIISRTRPDDP---RV-ALLLER--GFPFVTH 88 (268)
T ss_pred HHHHHHcCCCCEEEEecCCCCCh---HH-HHHHhc--CCCEEEE
Confidence 44445667899999988764322 12 334433 4677765
No 270
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=33.61 E-value=2.4e+02 Score=26.32 Aligned_cols=120 Identities=15% Similarity=0.227 Sum_probs=67.4
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCC-HHHHhhhhhcCCcceecc-cCC---
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLS-RKVVQNIHLSGGSLLGVS-RGA--- 250 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt-~~~V~~i~~~GGSiLGTS-R~~--- 250 (532)
+|-+-|.||+.=-+..-| +...|+.+|++ |+ +.|. ..+ .+.++.....+-.++|-| .-.
T Consensus 3 ~vvigtv~~D~HdiGk~i--v~~~l~~~Gfe-Vi-----~LG~--------~v~~e~~v~aa~~~~adiVglS~l~~~~~ 66 (134)
T TIGR01501 3 TIVLGVIGSDCHAVGNKI--LDHAFTNAGFN-VV-----NLGV--------LSPQEEFIKAAIETKADAILVSSLYGHGE 66 (134)
T ss_pred eEEEEEecCChhhHhHHH--HHHHHHHCCCE-EE-----ECCC--------CCCHHHHHHHHHHcCCCEEEEecccccCH
Confidence 566778888865444322 22234678884 53 1111 123 445666666666677643 322
Q ss_pred ccHHHHHHHHHHhCC-cEEEEeCChhhHHHHH--HHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHH
Q 009559 251 PTVSEIVDSMEERGI-NMLFVLGGNGTHAGAN--AIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAI 327 (532)
Q Consensus 251 ~~~~~ivd~L~~~gI-d~L~vIGGdGT~~gA~--~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI 327 (532)
....++++.|++.++ +..+++||.-..-... ...+++++.| .|..||=.|..+.+.+.|
T Consensus 67 ~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~G------------------v~~vF~pgt~~~~iv~~l 128 (134)
T TIGR01501 67 IDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMG------------------FDRVFAPGTPPEVVIADL 128 (134)
T ss_pred HHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcC------------------CCEEECcCCCHHHHHHHH
Confidence 256889999999999 5667799964321111 1223344433 355566666666666555
Q ss_pred HH
Q 009559 328 NS 329 (532)
Q Consensus 328 ~~ 329 (532)
+.
T Consensus 129 ~~ 130 (134)
T TIGR01501 129 KK 130 (134)
T ss_pred HH
Confidence 53
No 271
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=33.53 E-value=4.5e+02 Score=25.38 Aligned_cols=30 Identities=13% Similarity=0.018 Sum_probs=23.4
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHHcCC
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGV 205 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~~ygv 205 (532)
+||++..--.-|=.+.++.++...+..+|+
T Consensus 1 ~i~vi~~~~~~~~~~~~~~~i~~~~~~~g~ 30 (277)
T cd06319 1 QIAYIVSDLRIPFWQIMGRGVKSKAKALGY 30 (277)
T ss_pred CeEEEeCCCCchHHHHHHHHHHHHHHhcCC
Confidence 467777666678888888888888888877
No 272
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=33.45 E-value=3e+02 Score=28.13 Aligned_cols=97 Identities=13% Similarity=0.086 Sum_probs=60.7
Q ss_pred chHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC-----ccHHHHHHHHH
Q 009559 187 PGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA-----PTVSEIVDSME 261 (532)
Q Consensus 187 PGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~-----~~~~~ivd~L~ 261 (532)
|.-......++..+..+|+++|.-+..-.. + -..+-....+.+...|+++....... .+...++..|+
T Consensus 117 p~~~~~~~a~~~~~~~~~~~~v~ii~~~~~------~-g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~ 189 (350)
T cd06366 117 PSDSSQNPAIAALLKKFGWRRVATIYEDDD------Y-GSGGLPDLVDALQEAGIEISYRAAFPPSANDDDITDALKKLK 189 (350)
T ss_pred cchHhHHHHHHHHHHHCCCcEEEEEEEcCc------c-cchhHHHHHHHHHHcCCEEEEEeccCCCCChhHHHHHHHHHh
Confidence 444455666777777789877655432221 1 01122334455666788877665533 36788899999
Q ss_pred HhCCcEEEEeCChhhHHHHHHHHHHHHhcCCC
Q 009559 262 ERGINMLFVLGGNGTHAGANAIHNECRKRRMK 293 (532)
Q Consensus 262 ~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~ 293 (532)
+.+-+.+++.+... .+..+.+.+++.|+.
T Consensus 190 ~~~~dvvi~~~~~~---~~~~~~~~a~~~g~~ 218 (350)
T cd06366 190 EKDSRVIVVHFSPD---LARRVFCEAYKLGMM 218 (350)
T ss_pred cCCCeEEEEECChH---HHHHHHHHHHHcCCc
Confidence 88999888877655 445565677777764
No 273
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=33.20 E-value=98 Score=29.03 Aligned_cols=44 Identities=14% Similarity=0.265 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHh--CCcEEEEeCChhhHHH-HHHHHHHHHhcCCCceE
Q 009559 252 TVSEIVDSMEER--GINMLFVLGGNGTHAG-ANAIHNECRKRRMKVAV 296 (532)
Q Consensus 252 ~~~~ivd~L~~~--gId~L~vIGGdGT~~g-A~~L~ee~~kr~~~I~V 296 (532)
+.+++.+.+++. .+.++.+-||+ .+.. ...|.+.++++|+++.+
T Consensus 47 t~eel~~~I~~~~~~~~gVt~SGGE-l~~~~l~~ll~~lk~~Gl~i~l 93 (147)
T TIGR02826 47 TPEYLTKTLDKYRSLISCVLFLGGE-WNREALLSLLKIFKEKGLKTCL 93 (147)
T ss_pred CHHHHHHHHHHhCCCCCEEEEechh-cCHHHHHHHHHHHHHCCCCEEE
Confidence 456666666665 57899999999 5533 55777778877765543
No 274
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=33.17 E-value=7.4e+02 Score=28.13 Aligned_cols=191 Identities=14% Similarity=0.121 Sum_probs=102.9
Q ss_pred HHHHHHHHHHcCCceEEEEccccc-ccccCCceeecCCHHHHhhhhhc-CCcceecccCCccHHHHHHHHHHh--CCcEE
Q 009559 193 IRHIVITLEIYGVKNIVGIPFGYR-GFCDKELTEMPLSRKVVQNIHLS-GGSLLGVSRGAPTVSEIVDSMEER--GINML 268 (532)
Q Consensus 193 Ir~iv~~l~~ygv~~V~Gi~~Gy~-GL~~~~~~~i~Lt~~~V~~i~~~-GGSiLGTSR~~~~~~~ivd~L~~~--gId~L 268 (532)
-..+++.|...|++.|||+.++.. .|++ .+... +=+++. +|......-+.+..-+. ++-.+
T Consensus 24 a~~l~~~L~~~GV~~vFgvpG~~~~~l~d--------------al~~~~~i~~i~-~rhE~~A~~~AdgYar~tg~~gv~ 88 (587)
T PRK06965 24 AEILMKALAAEGVEFIWGYPGGAVLYIYD--------------ELYKQDKIQHVL-VRHEQAAVHAADGYARATGKVGVA 88 (587)
T ss_pred HHHHHHHHHHcCCCEEEecCCcchHHHHH--------------HHhhcCCCeEEE-eCCHHHHHHHHHHHHHHhCCCeEE
Confidence 456788889999999999887632 2222 22111 223442 35444433444444333 48888
Q ss_pred EEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCc-------------cCChh--hHHHHHHHHHHHHHHh
Q 009559 269 FVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDK-------------TFGFD--TAVEEAQRAINSAYIE 333 (532)
Q Consensus 269 ~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~-------------SfGFd--TAv~~a~~aI~~a~~e 333 (532)
++-.|=|.......|++... -+++|+.|......+..+.+. |=-.. +..+.+.+.|+.+...
T Consensus 89 ~~t~GpG~~N~l~gl~~A~~---~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~ 165 (587)
T PRK06965 89 LVTSGPGVTNAVTGIATAYM---DSIPMVVISGQVPTAAIGQDAFQECDTVGITRPIVKHNFLVKDVRDLAETVKKAFYI 165 (587)
T ss_pred EECCCccHHHHHHHHHHHhh---cCCCEEEEecCCCccccCCCCcccccHHHHhcCCcceeEEeCCHHHHHHHHHHHHHH
Confidence 99999999988888876433 357888887776655332221 00000 1344566677777777
Q ss_pred hhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccCceEEEeecccc
Q 009559 334 AHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVVCVAEGAG 406 (532)
Q Consensus 334 A~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg~~VVVVAEGag 406 (532)
|.+.+.|-..+++---- +....... .....-..+-.|.... ....++.+.+++++-..-||++.-|+.
T Consensus 166 A~~~~~GPV~l~iP~Dv---~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~i~~~~~~L~~AkrPvil~G~g~~ 233 (587)
T PRK06965 166 ARTGRPGPVVVDIPKDV---SKTPCEYE-YPKSVEMRSYNPVTKG-HSGQIRKAVSLLLSAKRPYIYTGGGVI 233 (587)
T ss_pred HhcCCCCeEEEEeChhh---hhChhccc-cCccccccCCCCCCCC-CHHHHHHHHHHHHhcCCCEEEECCCcc
Confidence 77655565566653221 00000000 0000000000011011 124566666777776778888888874
No 275
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=33.01 E-value=5.3e+02 Score=26.04 Aligned_cols=37 Identities=27% Similarity=0.412 Sum_probs=28.8
Q ss_pred cEEEEeCChhhHHHH-HHHHHHHHhcCCCceEeeeecc
Q 009559 266 NMLFVLGGNGTHAGA-NAIHNECRKRRMKVAVVGVPKT 302 (532)
Q Consensus 266 d~L~vIGGdGT~~gA-~~L~ee~~kr~~~I~VIGIPKT 302 (532)
+.+|+.||.|..-.. ..|++++.++|.++.|++-|.-
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~ 39 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRG 39 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCc
Confidence 468899998877653 4788999988888888876553
No 276
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=32.77 E-value=7.9e+02 Score=28.03 Aligned_cols=190 Identities=17% Similarity=0.193 Sum_probs=103.0
Q ss_pred HHHHHHHHHcCCceEEEEcccc-cccccCCceeecCCHHHHhhhhhcCC-cceecccCCccHHHHHHHHHH--hCCcEEE
Q 009559 194 RHIVITLEIYGVKNIVGIPFGY-RGFCDKELTEMPLSRKVVQNIHLSGG-SLLGVSRGAPTVSEIVDSMEE--RGINMLF 269 (532)
Q Consensus 194 r~iv~~l~~ygv~~V~Gi~~Gy-~GL~~~~~~~i~Lt~~~V~~i~~~GG-SiLGTSR~~~~~~~ivd~L~~--~gId~L~ 269 (532)
..+++.|..+|++.|||+.++. ..|+ +.+....| .++ .+|......-+.+..-+ ...-.++
T Consensus 35 ~~l~~~L~~~GV~~vFgipG~~~~~l~--------------dal~~~~~i~~v-~~rhE~~A~~~Adgyar~tg~~gv~~ 99 (612)
T PRK07789 35 QAVVRSLEELGVDVVFGIPGGAILPVY--------------DPLFDSTKVRHV-LVRHEQGAGHAAEGYAQATGRVGVCM 99 (612)
T ss_pred HHHHHHHHHCCCCEEEEcCCcchHHHH--------------HHHhccCCceEE-EeccHHHHHHHHHHHHHHhCCCEEEE
Confidence 5678888899999999998862 2222 22222212 333 34544433334444333 2477888
Q ss_pred EeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCCh---------------hhHHHHHHHHHHHHHHhh
Q 009559 270 VLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGF---------------DTAVEEAQRAINSAYIEA 334 (532)
Q Consensus 270 vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGF---------------dTAv~~a~~aI~~a~~eA 334 (532)
+..|=|......-|++... -+++|+.|-.....+..+.+.--.+ -+..+.+.+.++.+...|
T Consensus 100 ~t~GPG~~N~l~gl~~A~~---~~~PllvI~G~~~~~~~~~~~~q~~d~~~l~~~~tk~s~~v~~~~~i~~~l~~A~~~A 176 (612)
T PRK07789 100 ATSGPGATNLVTPIADANM---DSVPVVAITGQVGRGLIGTDAFQEADIVGITMPITKHNFLVTDADDIPRVIAEAFHIA 176 (612)
T ss_pred ECCCccHHHHHHHHHHHhh---cCCCEEEEecCCCccccCCCcCcccchhhhhhcceeEEEEcCCHHHHHHHHHHHHHHH
Confidence 8889999888888876533 3578888877776665433211111 123466777888877778
Q ss_pred hhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccCceEEEeecccc
Q 009559 335 HSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVVCVAEGAG 406 (532)
Q Consensus 335 ~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg~~VVVVAEGag 406 (532)
.+.+.|-..+++--- - +......... ...-+.+..+... -....++.+.+++.+-.+-+|++..|+.
T Consensus 177 ~~~~~GPV~l~iP~D-v--~~~~~~~~~~-~~~~~~~~~~~~~-p~~~~i~~~~~~L~~AkrPlIl~G~g~~ 243 (612)
T PRK07789 177 STGRPGPVLVDIPKD-A--LQAQTTFSWP-PRMDLPGYRPVTK-PHGKQIREAAKLIAAARRPVLYVGGGVI 243 (612)
T ss_pred hcCCCceEEEEEccc-h--hhcccccccC-ccccccCCCCCCC-CCHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 765555445665321 0 0000000000 0000101011100 0124466666777777888889888873
No 277
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=32.71 E-value=75 Score=28.78 Aligned_cols=45 Identities=13% Similarity=0.205 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceE
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAV 296 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~V 296 (532)
+.+++.+.+++++||.+++-=-+.......++.++|++.+..+.+
T Consensus 129 ~~~~l~~~~~~~~id~v~ial~~~~~~~i~~ii~~~~~~~v~v~~ 173 (175)
T PF13727_consen 129 DLDDLPELVREHDIDEVIIALPWSEEEQIKRIIEELENHGVRVRV 173 (175)
T ss_dssp -GGGHHHHHHHHT--EEEE--TTS-HHHHHHHHHHHHTTT-EEEE
T ss_pred CHHHHHHHHHhCCCCEEEEEcCccCHHHHHHHHHHHHhCCCEEEE
Confidence 356899999999999999998887788888888999877655443
No 278
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=32.63 E-value=2.3e+02 Score=34.83 Aligned_cols=107 Identities=16% Similarity=0.257 Sum_probs=59.7
Q ss_pred CcEEEEEeCCCCcchH----HHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccC
Q 009559 174 EVKAAIVTCGGLCPGL----NDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRG 249 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGl----NavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~ 249 (532)
..||.|+=+|..--|. .-....+++.|.+.|+ +++.+.. +...+..+.+..+.+.. .
T Consensus 554 ~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~-~vi~v~~--------npetvs~~~~~aD~~y~----------e 614 (1066)
T PRK05294 554 RKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGY-ETIMVNC--------NPETVSTDYDTSDRLYF----------E 614 (1066)
T ss_pred CceEEEECccccccccccccchhHHHHHHHHHHCCC-EEEEEeC--------Cccccccccchhhheee----------c
Confidence 4577666655432332 2244456778888998 4665532 21111111112222111 1
Q ss_pred CccHHHHHHHHHHhCCcEEEE-eCChhhHHHHHHHHHHHHhcCCCceEeee-eccccc
Q 009559 250 APTVSEIVDSMEERGINMLFV-LGGNGTHAGANAIHNECRKRRMKVAVVGV-PKTIDN 305 (532)
Q Consensus 250 ~~~~~~ivd~L~~~gId~L~v-IGGdGT~~gA~~L~ee~~kr~~~I~VIGI-PKTIDN 305 (532)
..+.+.+.+.+++.+++++++ +||+-.. .+++.+++. +++++|- |++|+.
T Consensus 615 ~~~~e~v~~i~~~e~~dgVi~~~g~~~~~----~la~~le~~--Gi~ilg~s~~ai~~ 666 (1066)
T PRK05294 615 PLTLEDVLEIIEKEKPKGVIVQFGGQTPL----KLAKALEAA--GVPILGTSPDAIDL 666 (1066)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeCchhHH----HHHHHHHHC--CCceeCCCHHHHHH
Confidence 225688889999999999888 6777554 344445443 4667775 467763
No 279
>PLN02204 diacylglycerol kinase
Probab=32.59 E-value=66 Score=37.12 Aligned_cols=51 Identities=16% Similarity=0.298 Sum_probs=30.6
Q ss_pred HHHHhhhhhcCC---cceecccCCccHHHHHHHH---HHhCCcEEEEeCChhhHHHHH
Q 009559 230 RKVVQNIHLSGG---SLLGVSRGAPTVSEIVDSM---EERGINMLFVLGGNGTHAGAN 281 (532)
Q Consensus 230 ~~~V~~i~~~GG---SiLGTSR~~~~~~~ivd~L---~~~gId~L~vIGGdGT~~gA~ 281 (532)
++.|..+....| .++-|.|.+.- .+++..+ +..+.|.++++|||||+..+.
T Consensus 179 ~~~V~p~f~~a~i~~~v~~T~~aghA-~d~~~~~~~~~l~~~D~VVaVGGDGt~nEVl 235 (601)
T PLN02204 179 WETVSPIFIRAKVKTKVIVTERAGHA-FDVMASISNKELKSYDGVIAVGGDGFFNEIL 235 (601)
T ss_pred HHHHHHHHHHcCCeEEEEEecCcchH-HHHHHHHhhhhccCCCEEEEEcCccHHHHHH
Confidence 444555554444 24556665433 3333333 356789999999999986543
No 280
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=32.56 E-value=4e+02 Score=25.57 Aligned_cols=86 Identities=10% Similarity=0.136 Sum_probs=54.9
Q ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHH
Q 009559 177 AAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEI 256 (532)
Q Consensus 177 iaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~i 256 (532)
|||+...=.-|..+.++.++-+.+..+|++ +.-+. +........+.
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~~~~~g~~-~~~~~---------------------------------~~~~~~~~~~~ 47 (265)
T cd06291 2 IGLIVPTISNPFFSELARAVEKELYKKGYK-LILCN---------------------------------SDNDPEKEREY 47 (265)
T ss_pred EEEEECCCCChhHHHHHHHHHHHHHHCCCe-EEEec---------------------------------CCccHHHHHHH
Confidence 688887777889999999999988888873 32100 00001122356
Q ss_pred HHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeeccccc
Q 009559 257 VDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDN 305 (532)
Q Consensus 257 vd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDN 305 (532)
++.+...+++++++.+.+... +++++ .+++||.+=...++
T Consensus 48 i~~~~~~~~dgiii~~~~~~~-------~~~~~--~gipvv~~~~~~~~ 87 (265)
T cd06291 48 LEMLRQNQVDGIIAGTHNLGI-------EEYEN--IDLPIVSFDRYLSE 87 (265)
T ss_pred HHHHHHcCCCEEEEecCCcCH-------HHHhc--CCCCEEEEeCCCCC
Confidence 778888999999999876442 12233 35677755444443
No 281
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=32.50 E-value=5.3e+02 Score=25.90 Aligned_cols=65 Identities=11% Similarity=0.138 Sum_probs=42.2
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHH
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSE 255 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ 255 (532)
.||++...-.-|-.+.++.++...+..+|+. ++-+. +........+
T Consensus 61 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~~gy~-~~i~~---------------------------------~~~~~~~~~~ 106 (311)
T TIGR02405 61 VVAVIVSRLDSPSENLAVSGMLPVFYTAGYD-PIIME---------------------------------SQFSPQLTNE 106 (311)
T ss_pred EEEEEeCCcccccHHHHHHHHHHHHHHCCCe-EEEec---------------------------------CCCChHHHHH
Confidence 6888886545566777888888888777773 32100 1111112235
Q ss_pred HHHHHHHhCCcEEEEeCCh
Q 009559 256 IVDSMEERGINMLFVLGGN 274 (532)
Q Consensus 256 ivd~L~~~gId~L~vIGGd 274 (532)
.++.|..+++|++++++..
T Consensus 107 ~~~~l~~~~vdGvIi~~~~ 125 (311)
T TIGR02405 107 HLSVLQKRNVDGVILFGFT 125 (311)
T ss_pred HHHHHHhcCCCEEEEeCCC
Confidence 5677888999999999854
No 282
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=32.45 E-value=3e+02 Score=22.96 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=47.7
Q ss_pred EEEEeCCCCcc-hHHHHHHHHHHHHHH-cCCceE-EEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccH
Q 009559 177 AAIVTCGGLCP-GLNDVIRHIVITLEI-YGVKNI-VGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTV 253 (532)
Q Consensus 177 iaIvt~GG~cP-GlNavIr~iv~~l~~-ygv~~V-~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~ 253 (532)
+-++--|..-| ..|..+..+.+.+.+ .+...+ +|+.+. ..+++
T Consensus 2 lllv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~~~----------------------------------~~P~i 47 (101)
T cd03409 2 LLVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQSG----------------------------------LGPDT 47 (101)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEECC----------------------------------CCCCH
Confidence 34556677877 899999999998854 321112 222221 35678
Q ss_pred HHHHHHHHHhCCcEEEEe-----CChhhH-HHHHHHHHHH
Q 009559 254 SEIVDSMEERGINMLFVL-----GGNGTH-AGANAIHNEC 287 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vI-----GGdGT~-~gA~~L~ee~ 287 (532)
+++++.|++.|++.++++ -|..+. +-...+.+..
T Consensus 48 ~~~l~~l~~~g~~~vvvvPl~~~~g~h~~~di~~~~~~~~ 87 (101)
T cd03409 48 EEAIRELAEEGYQRVVIVPLAPVSGDEVFYDIDSEIGLVR 87 (101)
T ss_pred HHHHHHHHHcCCCeEEEEeCccccChhhHHHHHHHHHHHH
Confidence 889999998898887664 455555 3334444333
No 283
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=32.41 E-value=1.7e+02 Score=29.30 Aligned_cols=117 Identities=17% Similarity=0.214 Sum_probs=70.5
Q ss_pred cCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccC
Q 009559 170 FKPEEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRG 249 (532)
Q Consensus 170 f~p~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~ 249 (532)
-++..+|++|.-+| +|=+.+++.|...|. +|+|+.+.--.+++.+- |+.+.+..+....|++.+-...
T Consensus 27 ~~l~~~~v~I~G~G-------~VG~~~a~~L~~~g~-~vv~v~D~~g~~~~~~G----ld~~~l~~~~~~~g~l~~~~~~ 94 (227)
T cd01076 27 IGLAGARVAIQGFG-------NVGSHAARFLHEAGA-KVVAVSDSDGTIYNPDG----LDVPALLAYKKEHGSVLGFPGA 94 (227)
T ss_pred CCccCCEEEEECCC-------HHHHHHHHHHHHCCC-EEEEEECCCCeEECCCC----CCHHHHHHHHHhcCCcccCCCc
Confidence 45678999988554 566778888888898 69999998777777653 5677777766666665543211
Q ss_pred C---c--------c------HHHHH--HHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeeccccc
Q 009559 250 A---P--------T------VSEIV--DSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDN 305 (532)
Q Consensus 250 ~---~--------~------~~~iv--d~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDN 305 (532)
. + | .+.++ ++.. .+.+=+|+||-.-.-+ ..-.+.+++|| |+.+|--+-|
T Consensus 95 ~~~~~~~i~~~~~Dvlip~a~~~~i~~~~~~--~l~a~~I~egAN~~~t-~~a~~~L~~rG----i~~~PD~~aN 162 (227)
T cd01076 95 ERITNEELLELDCDILIPAALENQITADNAD--RIKAKIIVEAANGPTT-PEADEILHERG----VLVVPDILAN 162 (227)
T ss_pred eecCCccceeecccEEEecCccCccCHHHHh--hceeeEEEeCCCCCCC-HHHHHHHHHCC----CEEEChHHhc
Confidence 0 0 1 11111 2222 2335566666554443 33345566666 6777766655
No 284
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=32.30 E-value=79 Score=28.40 Aligned_cols=68 Identities=10% Similarity=0.177 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHH
Q 009559 253 VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRA 326 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~a 326 (532)
-+++++.|.+ ..++.|||-+-.-+.++++..+.+.++.-++-.|+. |++..+.+-.|+-++-+.....
T Consensus 42 ~~~v~~~ln~----~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~--~~~~vv~~i~G~~~~~~ll~~L 109 (116)
T cd02991 42 APEVIEYINT----RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKD--NRMTIVGRLEGLIQPEDLINRL 109 (116)
T ss_pred CHHHHHHHHc----CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecC--CceEEEEEEeCCCCHHHHHHHH
Confidence 3678888863 479999999988889999888888888777777774 7777777889999886655443
No 285
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=31.93 E-value=8e+02 Score=27.81 Aligned_cols=185 Identities=19% Similarity=0.249 Sum_probs=100.9
Q ss_pred HHHHHHHHHcCCceEEEEcccc-cccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHHHHHHHH--hCCcEEEE
Q 009559 194 RHIVITLEIYGVKNIVGIPFGY-RGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEIVDSMEE--RGINMLFV 270 (532)
Q Consensus 194 r~iv~~l~~ygv~~V~Gi~~Gy-~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ivd~L~~--~gId~L~v 270 (532)
..+++.|...|+++|||+.++. .+|++. +...+=.++ .+|......-+.+..-+ .+.-.+++
T Consensus 5 ~~l~~~L~~~Gv~~vFg~pG~~~~~l~~a--------------l~~~~i~~i-~~~hE~~A~~~Adgyar~tg~~gv~~~ 69 (586)
T PRK06276 5 EAIIKALEAEGVKIIFGYPGGALLPFYDA--------------LYDSDLIHI-LTRHEQAAAHAADGYARASGKVGVCVA 69 (586)
T ss_pred HHHHHHHHHcCCCEEEECCCcchHHHHHH--------------HHhCCCcEE-EeccHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4577788899999999998873 233322 111122334 23443333334433332 35888899
Q ss_pred eCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCC------CCC----------ccCChhhHHHHHHHHHHHHHHhh
Q 009559 271 LGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDIL------LMD----------KTFGFDTAVEEAQRAINSAYIEA 334 (532)
Q Consensus 271 IGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~------~tD----------~SfGFdTAv~~a~~aI~~a~~eA 334 (532)
.-|=|.......|++... -+++|+.|-.+.+..-. .+| +|.=- +..+.+.+.|+.+...|
T Consensus 70 t~GPG~~n~l~~i~~A~~---~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~s~~v-~~~~~i~~~i~~A~~~A 145 (586)
T PRK06276 70 TSGPGATNLVTGIATAYA---DSSPVIALTGQVPTKLIGNDAFQEIDALGIFMPITKHNFQI-KKPEEIPEIFRAAFEIA 145 (586)
T ss_pred CCCccHHHHHHHHHHHHh---cCCCEEEEeCCCCccccCCCCCccccHhhHHhhhcceEEec-CCHHHHHHHHHHHHHHh
Confidence 999999998888886543 25778887665554321 111 11111 12345667777777778
Q ss_pred hhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCC-------CCCCCCChhHHHHHHHHHHhccCceEEEeecccc
Q 009559 335 HSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPE-------SPFNLHGPNGVLRHLKYLIETKGSAVVCVAEGAG 406 (532)
Q Consensus 335 ~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE-------~pf~leg~~~ll~~lk~~~~~kg~~VVVVAEGag 406 (532)
.+.+.|-..+++- ++ +.. ..+... .. -.|+ .|-. ......++.+-+.+.+-.+-+|++..|+.
T Consensus 146 ~~~~~GPV~l~iP-~D---v~~-~~~~~~--~~-~~~~~~~~~~~~~~~-~~~~~~i~~~~~~L~~AkrPvil~G~g~~ 215 (586)
T PRK06276 146 KTGRPGPVHIDLP-KD---VQE-GELDLE--KY-PIPAKIDLPGYKPTT-FGHPLQIKKAAELIAEAERPVILAGGGVI 215 (586)
T ss_pred cCCCCCcEEEEcC-hh---HHh-hhhccc--cc-cccccccccCCCCCC-CCCHHHHHHHHHHHHcCCCeEEEECCCcC
Confidence 7766666666764 22 111 111100 00 0111 0110 11134456666677776778899888873
No 286
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=31.77 E-value=3.3e+02 Score=27.65 Aligned_cols=95 Identities=13% Similarity=0.137 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC---ccHHHHHHHHHHhC
Q 009559 188 GLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA---PTVSEIVDSMEERG 264 (532)
Q Consensus 188 GlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~---~~~~~ivd~L~~~g 264 (532)
.-....+.++..+...+.+++.-+... +.+- -.+-....+.+...|+.+.+..+.. .+...++..|++.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~v~~i~~~------~~~g-~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~ 190 (334)
T cd06327 118 DTYMLANGTAPALVKAGGKKWFFLTAD------YAFG-HSLERDARKVVKANGGKVVGSVRHPLGTSDFSSYLLQAQASG 190 (334)
T ss_pred ChHHHHHHHHHHHHHhcCCeEEEEecc------hHHh-HHHHHHHHHHHHhcCCEEcCcccCCCCCccHHHHHHHHHhCC
Confidence 334555666666665666665432211 1110 0011222233455788888776654 37888999999999
Q ss_pred CcEEEEeCChhhHHHHHHHHHHHHhcCC
Q 009559 265 INMLFVLGGNGTHAGANAIHNECRKRRM 292 (532)
Q Consensus 265 Id~L~vIGGdGT~~gA~~L~ee~~kr~~ 292 (532)
.|++++.+..+ .+..+.+++++.|+
T Consensus 191 ~d~v~~~~~~~---~~~~~~~~~~~~g~ 215 (334)
T cd06327 191 ADVLVLANAGA---DTVNAIKQAAEFGL 215 (334)
T ss_pred CCEEEEeccch---hHHHHHHHHHHhCC
Confidence 99998877544 23345567777776
No 287
>PLN02735 carbamoyl-phosphate synthase
Probab=31.58 E-value=2.2e+02 Score=35.37 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=63.8
Q ss_pred CCcEEEEEeCCCCcch----HHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceeccc
Q 009559 173 EEVKAAIVTCGGLCPG----LNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSR 248 (532)
Q Consensus 173 ~~~kiaIvt~GG~cPG----lNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR 248 (532)
...||.|+=+|..-=| .--+...++++|.+.|++ ++.+.. +.+.+..+.+..+.....
T Consensus 573 ~~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~G~~-tI~v~~--------npetvstd~~~aD~~y~~--------- 634 (1102)
T PLN02735 573 NKKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAGYE-TIMMNS--------NPETVSTDYDTSDRLYFE--------- 634 (1102)
T ss_pred CCceEEEeCccccccCcccccceeHHHHHHHHHHcCCe-EEEEeC--------CCccccCCcccCCeEEEE---------
Confidence 3457777777754333 122444577888889995 444332 221111111112221111
Q ss_pred CCccHHHHHHHHHHhCCcEEEE-eCChhhHHHHHHHHHHHHhcC-------CCceEeee
Q 009559 249 GAPTVSEIVDSMEERGINMLFV-LGGNGTHAGANAIHNECRKRR-------MKVAVVGV 299 (532)
Q Consensus 249 ~~~~~~~ivd~L~~~gId~L~v-IGGdGT~~gA~~L~ee~~kr~-------~~I~VIGI 299 (532)
....+.+++.+++.+++++++ +||+-.+.-|..+.+.+.+++ .++.++|-
T Consensus 635 -pl~~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~gi~i~G~ 692 (1102)
T PLN02735 635 -PLTVEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSASGNGNVKIWGT 692 (1102)
T ss_pred -eCCHHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccchhhhhcCCeEEECC
Confidence 224789999999999999996 888888888887776554332 24666663
No 288
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=31.16 E-value=1.4e+02 Score=29.35 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=47.3
Q ss_pred eEEEEcccccccccCCce------ee-cCCHHHHhhhhhcCCcceecccCC--ccHHHHHHHHHHhCCcEEEEeCChhh
Q 009559 207 NIVGIPFGYRGFCDKELT------EM-PLSRKVVQNIHLSGGSLLGVSRGA--PTVSEIVDSMEERGINMLFVLGGNGT 276 (532)
Q Consensus 207 ~V~Gi~~Gy~GL~~~~~~------~i-~Lt~~~V~~i~~~GGSiLGTSR~~--~~~~~ivd~L~~~gId~L~vIGGdGT 276 (532)
.+++.-.|+.=+++.++. ++ .++++..+.+...+=.++--...+ -|.+.+++.+.+++.+-++++|+-|.
T Consensus 20 ~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~~~eKD~TD~e~Al~~~~~~~~~~i~i~Ga~Gg 98 (203)
T TIGR01378 20 LVIAADGGANHLLKLGLTPDLIVGDFDSIDEEELDFYKKAGVKIIVFPPEKDTTDLELALKYALERGADEITILGATGG 98 (203)
T ss_pred EEEEEChHHHHHHHCCCCCCEEEeCcccCCHHHHHHHHHcCCceEEcCCCCCCCHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence 478999998777664431 12 267777776654432334323333 37899999999999999999999775
No 289
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=30.81 E-value=3.6e+02 Score=27.71 Aligned_cols=102 Identities=11% Similarity=0.057 Sum_probs=59.2
Q ss_pred cchHHHHHHHHHHHHH-HcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC---ccHHHHHHHHH
Q 009559 186 CPGLNDVIRHIVITLE-IYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA---PTVSEIVDSME 261 (532)
Q Consensus 186 cPGlNavIr~iv~~l~-~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~---~~~~~ivd~L~ 261 (532)
+|.--...+.+++.+. +.|.++|.-+.... .+ --.+.....+.+...|+++..+.+.. .+....+..++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~------~~-g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~i~ 196 (362)
T cd06343 124 QPSYQDEARIYAKYLVEEKPNAKIAVLYQND------DF-GKDYLKGLKDGLGDAGLEIVAETSYEVTEPDFDSQVAKLK 196 (362)
T ss_pred CCChHHHHHHHHHHHHHhCCCceEEEEEecc------HH-HHHHHHHHHHHHHHcCCeEEEEeeecCCCccHHHHHHHHH
Confidence 4443345566677654 45676654332211 11 00122333444556677777665533 36788899999
Q ss_pred HhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEe
Q 009559 262 ERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVV 297 (532)
Q Consensus 262 ~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VI 297 (532)
+.+.+.+++++..+ .+..+.+.+++.|++-.++
T Consensus 197 ~~~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~ 229 (362)
T cd06343 197 AAGADVVVLATTPK---FAAQAIRKAAELGWKPTFL 229 (362)
T ss_pred hcCCCEEEEEcCcH---HHHHHHHHHHHcCCCceEE
Confidence 99999999888654 2344556777777764443
No 290
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=30.61 E-value=3.1e+02 Score=30.63 Aligned_cols=186 Identities=18% Similarity=0.212 Sum_probs=100.2
Q ss_pred HHHHHHHHHHcCCceEEEEcccc-cccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHHHHHHHH--hCCcEEE
Q 009559 193 IRHIVITLEIYGVKNIVGIPFGY-RGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEIVDSMEE--RGINMLF 269 (532)
Q Consensus 193 Ir~iv~~l~~ygv~~V~Gi~~Gy-~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ivd~L~~--~gId~L~ 269 (532)
-..+++.|...|+++|||+.++. ..|++. +...+=.++ .+|......-+.+..-+ ..+-.++
T Consensus 4 ~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~a--------------l~~~~i~~v-~~~hE~~A~~~Adgyar~sg~~gv~~ 68 (548)
T PRK08978 4 AQWVVHALRAQGVDTVFGYPGGAIMPVYDA--------------LYDGGVEHL-LCRHEQGAAMAAIGYARATGKVGVCI 68 (548)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcchHHHHHH--------------HHhcCCeEE-EeccHHHHHHHHHHHHHHhCCCEEEE
Confidence 45678888999999999998873 233332 111111223 23433322223332222 3588888
Q ss_pred EeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCC------C----------ccCChhhHHHHHHHHHHHHHHh
Q 009559 270 VLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLM------D----------KTFGFDTAVEEAQRAINSAYIE 333 (532)
Q Consensus 270 vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~t------D----------~SfGFdTAv~~a~~aI~~a~~e 333 (532)
+--|=|.......|++... -+++|+.|-...+.+..+. | ++.=- +-.+.+.+.++.+...
T Consensus 69 ~t~GpG~~n~~~~l~~A~~---~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v-~~~~~~~~~i~~A~~~ 144 (548)
T PRK08978 69 ATSGPGATNLITGLADALL---DSVPVVAITGQVSSPLIGTDAFQEIDVLGLSLACTKHSFLV-QSLEELPEIMAEAFEI 144 (548)
T ss_pred ECCCCcHHHHHHHHHHHhh---cCCCEEEEecCCCccccCCCCCcccchhccccCceeeEEEE-CCHHHHHHHHHHHHHH
Confidence 8889999988888876543 3578888877666543221 1 00000 1245666777777777
Q ss_pred hhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccCceEEEeecccc
Q 009559 334 AHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVVCVAEGAG 406 (532)
Q Consensus 334 A~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg~~VVVVAEGag 406 (532)
|.+.+.|-..+++--.- ....... . .. ..++. ........-++.+-+.+.+-.+-+|++..|+.
T Consensus 145 A~~~~~GPV~l~iP~dv---~~~~~~~--~-~~--~~~~~-~~~~~~~~~l~~~~~~L~~AkrPvIl~G~g~~ 208 (548)
T PRK08978 145 ASSGRPGPVLVDIPKDI---QLAEGEL--E-PH--LTTVE-NEPAFPAAELEQARALLAQAKKPVLYVGGGVG 208 (548)
T ss_pred HhcCCCCcEEEecChhh---hhccccc--c-cc--ccccC-CCCCCCHHHHHHHHHHHHcCCCCEEEECCCcc
Confidence 77655565566765321 1111100 0 00 01110 11111123455555666666788899988874
No 291
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=30.60 E-value=5.9e+02 Score=25.89 Aligned_cols=66 Identities=11% Similarity=0.077 Sum_probs=41.5
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHH
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVS 254 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~ 254 (532)
..||++...-.-|=...++.++-..+..+|+. ++- .+++ . + ...-.
T Consensus 60 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~-~~~-~~~~-----~-------~--------------------~~~~~ 105 (343)
T PRK10727 60 ETVGLVVGDVSDPFFGAMVKAVEQVAYHTGNF-LLI-GNGY-----H-------N--------------------EQKER 105 (343)
T ss_pred CeEEEEeCCCCcchHHHHHHHHHHHHHHcCCE-EEE-EeCC-----C-------C--------------------HHHHH
Confidence 46888876555667777888888877777763 321 0000 0 0 01123
Q ss_pred HHHHHHHHhCCcEEEEeCCh
Q 009559 255 EIVDSMEERGINMLFVLGGN 274 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGd 274 (532)
+.++.|...++|++++.+.+
T Consensus 106 ~~i~~l~~~~vdgiIi~~~~ 125 (343)
T PRK10727 106 QAIEQLIRHRCAALVVHAKM 125 (343)
T ss_pred HHHHHHHhcCCCEEEEecCC
Confidence 45677888999999999864
No 292
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=30.45 E-value=4.1e+02 Score=26.64 Aligned_cols=100 Identities=18% Similarity=0.256 Sum_probs=60.4
Q ss_pred CcchHHHHHHHHHHHHH-HcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC---ccHHHHHHHH
Q 009559 185 LCPGLNDVIRHIVITLE-IYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA---PTVSEIVDSM 260 (532)
Q Consensus 185 ~cPGlNavIr~iv~~l~-~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~---~~~~~ivd~L 260 (532)
..|..-...++++.++. .+|.++|.-+..... +. ..+.....+.+...|+.+.+..+.. .+...+++.|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~g~~~v~iv~~~~~--~g-----~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~~~~l 186 (343)
T PF13458_consen 114 LSPSDSQQAAALAEYLAKKLGAKKVAIVYPDDP--YG-----RSLAEAFRKALEAAGGKVVGEIRYPPGDTDFSALVQQL 186 (343)
T ss_dssp SS--HHHHHHHHHHHHHHTTTTSEEEEEEESSH--HH-----HHHHHHHHHHHHHTTCEEEEEEEE-TTSSHHHHHHHHH
T ss_pred EeccccHHHHHHHHHHHHHcCCcEEEEEecCch--hh-----hHHHHHHHHHHhhcCceeccceecccccccchHHHHHH
Confidence 34566677788888764 578777655432211 00 1122334455667788877665543 5788899999
Q ss_pred HHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCc
Q 009559 261 EERGINMLFVLGGNGTHAGANAIHNECRKRRMKV 294 (532)
Q Consensus 261 ~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I 294 (532)
++.+.|.+++.++-.. +..+.+.+++.+++-
T Consensus 187 ~~~~~d~v~~~~~~~~---~~~~~~~~~~~~~~~ 217 (343)
T PF13458_consen 187 KSAGPDVVVLAGDPAD---AAAFLRQLRQLGLKP 217 (343)
T ss_dssp HHTTTSEEEEESTHHH---HHHHHHHHHHTTGCS
T ss_pred hhcCCCEEEEeccchh---HHHHHHHHHhhcccc
Confidence 9999999777775442 334445666667654
No 293
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=30.31 E-value=3.3e+02 Score=31.18 Aligned_cols=108 Identities=26% Similarity=0.353 Sum_probs=69.4
Q ss_pred HHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCC-cceecccCCccHHHHHHHH-HHhCCcEEEE
Q 009559 193 IRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGG-SLLGVSRGAPTVSEIVDSM-EERGINMLFV 270 (532)
Q Consensus 193 Ir~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GG-SiLGTSR~~~~~~~ivd~L-~~~gId~L~v 270 (532)
-.-+...|.+.|+++|||+.+-|. -..++.|...++ ...|++-.. ...-+.|-- +-.||.+|++
T Consensus 7 G~YL~~RL~qlgi~~iFGVPGDyN-------------L~lLD~i~~~~~lrWvGn~NEL-NaaYAADGYaR~~Gi~alvT 72 (557)
T COG3961 7 GDYLFDRLAQLGIKSIFGVPGDYN-------------LSLLDKIYSVPGLRWVGNANEL-NAAYAADGYARLNGISALVT 72 (557)
T ss_pred HHHHHHHHHhcCCceeeeCCCccc-------------HHHHHHhhcCCCceeecccchh-hhhhhhcchhhhcCceEEEE
Confidence 344667778899999999665442 223444444444 345665522 111122211 2258999999
Q ss_pred eCChhhHHHHHHHH-HHHHhcCCCceEeeeecccccCC-CCCCccCC
Q 009559 271 LGGNGTHAGANAIH-NECRKRRMKVAVVGVPKTIDNDI-LLMDKTFG 315 (532)
Q Consensus 271 IGGdGT~~gA~~L~-ee~~kr~~~I~VIGIPKTIDNDI-~~tD~SfG 315 (532)
-=|-|-+.+.+-|+ .+++.-. =+.|+|+|-|=++.- .+..||+|
T Consensus 73 TfGVGELSA~NGIAGSYAE~vp-VvhIvG~P~~~~q~~~~llHHTLG 118 (557)
T COG3961 73 TFGVGELSALNGIAGSYAEHVP-VVHIVGVPTTSAQASGLLLHHTLG 118 (557)
T ss_pred ecccchhhhhcccchhhhhcCC-EEEEEcCCCcchhhccchheeecc
Confidence 99999999999888 4444322 378999998877665 36678888
No 294
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=29.97 E-value=4.9e+02 Score=27.44 Aligned_cols=154 Identities=21% Similarity=0.303 Sum_probs=84.5
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHH---HHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHH
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAI---HNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAIN 328 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L---~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~ 328 (532)
-.+.+.+.+++++=+.++++++--+---...+ .+++++ ..+++|+.+.- +... -++.-|+++|++...+.+.
T Consensus 68 l~~~i~~~~~~~~p~~i~v~~tc~~~liGdDi~~v~~~~~~-~~~~~vv~~~~---~gf~-~~~~~G~~~a~~~~~~~~~ 142 (399)
T cd00316 68 LLEAIINELKRYKPKVIFVYTTCTTELIGDDIEAVAKEASK-EIGIPVVPAST---PGFR-GSQSAGYDAAVKAIIDHLV 142 (399)
T ss_pred HHHHHHHHHHHcCCCEEEEecCchhhhhccCHHHHHHHHHH-hhCCceEEeeC---CCCc-ccHHHHHHHHHHHHHHHHh
Confidence 45678888888888999999865554333322 223322 24566776643 2222 1234455555555444332
Q ss_pred HHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccCceEEEee-ccccc
Q 009559 329 SAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVVCVA-EGAGQ 407 (532)
Q Consensus 329 ~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg~~VVVVA-EGag~ 407 (532)
.-. +.. ....-.+-||.+.+..- +-++.|++.+++.|.-|+.+- .|..-
T Consensus 143 ~~~-~~~-------------------------~~~~~~vNlig~~~~~~----~d~~el~~ll~~~G~~v~~~~~~~~s~ 192 (399)
T cd00316 143 GTA-EPE-------------------------ETEPGSVNLIGGYNLGG----GDLRELKRLLEEMGIRVNALFDGGTTV 192 (399)
T ss_pred ccc-CcC-------------------------CCCCCcEEEECCCCCch----hhHHHHHHHHHHcCCcEEEEcCCCCCH
Confidence 100 000 00112455666665542 245788888998897766554 44542
Q ss_pred hhhcccccccCCCCccccc-hHHHHHHHHHHHHHhcCcc
Q 009559 408 SLIKKTNATDASGNIVLGD-VGVLIQQETKKYFKEIGVP 445 (532)
Q Consensus 408 ~l~~~~~~~DasGn~~l~d-Ig~~L~~~I~~~f~~~g~~ 445 (532)
+-+. ...+|.-|..+.. .+..+++.+++.+ |++
T Consensus 193 ~~i~--~~~~A~~nlv~~~~~g~~~a~~l~~~~---g~p 226 (399)
T cd00316 193 EELR--ELGNAKLNLVLCRESGLYLARYLEEKY---GIP 226 (399)
T ss_pred HHHH--hhccCcEEEEecHhHHHHHHHHHHHHh---CCC
Confidence 2221 2236667777765 7888888888775 554
No 295
>PF01994 Trm56: tRNA ribose 2'-O-methyltransferase, aTrm56; InterPro: IPR002845 This entry represents tRNA ribose 2'-O-methyltransferase aTrm56, which specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs. The crystal structure of Pyrococcus horikoshii aTrm56 complexed with S-adenosyl-L-methionine has been determined to 2.48 A resolution. aTrm56 consists of the SPOUT domain, which contains the characteristic deep trefoil knot, and a unique C-terminal beta-hairpin []. A conserved cytidine at position 56 of tRNA contributes to the maintenance of the L-shaped tertiary structure. aTrm56 catalyzes the 2'-O-methylation of the cytidine residue in archaeal tRNA, using S-adenosyl-L-methionine. Biochemical assays showed that aTrm56 forms a dimer and prefers the L-shaped tRNA to the lambda form as its substrate [, ].; GO: 0008175 tRNA methyltransferase activity, 0002128 tRNA nucleoside ribose methylation, 0005737 cytoplasm; PDB: 2YY8_A 2O3A_B.
Probab=29.88 E-value=64 Score=29.75 Aligned_cols=67 Identities=19% Similarity=0.374 Sum_probs=43.6
Q ss_pred CCHH-HHhhhhhcCCcceecccCCccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeee
Q 009559 228 LSRK-VVQNIHLSGGSLLGVSRGAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVP 300 (532)
Q Consensus 228 Lt~~-~V~~i~~~GGSiLGTSR~~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIP 300 (532)
-+|. .+..|...||.+..-+=++..++++++.|++.+=+.|+|+|+.--=.-...+++ ++++|-.=|
T Consensus 11 ~~w~~~i~~wK~~~G~VVHLTMYG~~i~dvi~~Ir~~~~~~lvVVGaeKVP~evYe~AD------yNVaVgnQP 78 (120)
T PF01994_consen 11 VSWKSYIREWKEKGGKVVHLTMYGENIDDVIDEIRESCKDLLVVVGAEKVPGEVYELAD------YNVAVGNQP 78 (120)
T ss_dssp S-HHHHHHC----SSEEEEE-TTSEEHHHCHHHHHHCTSEEEEEE-SS---CCHHHHSS------EEEESSSS-
T ss_pred CCHHHHHHHhcccCCeEEEEEecCCchHHHHHHHhccCCCEEEEECCCcCCHHHHhhCC------cceeeCCCC
Confidence 3454 688898999998888888889999999999999999999999876666666654 455554444
No 296
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=29.82 E-value=86 Score=26.13 Aligned_cols=44 Identities=20% Similarity=0.390 Sum_probs=27.0
Q ss_pred CcEEEEEeC-CCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccc
Q 009559 174 EVKAAIVTC-GGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFC 219 (532)
Q Consensus 174 ~~kiaIvt~-GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~ 219 (532)
..+| |+.| +|...+.-..++ +...+..+|+++|+-+.+||+++.
T Consensus 67 ~~~i-v~yc~~~~~~~~~~~~~-~~~~l~~~g~~~v~~l~GG~~~w~ 111 (113)
T PF00581_consen 67 DKDI-VFYCSSGWRSGSAAAAR-VAWILKKLGFKNVYILDGGFEAWK 111 (113)
T ss_dssp TSEE-EEEESSSCHHHHHHHHH-HHHHHHHTTTSSEEEETTHHHHHH
T ss_pred cccc-eeeeecccccchhHHHH-HHHHHHHcCCCCEEEecChHHHHh
Confidence 3456 6655 444444433322 222355689988999999998865
No 297
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=29.74 E-value=5.4e+02 Score=25.11 Aligned_cols=84 Identities=11% Similarity=0.023 Sum_probs=49.4
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC---cc
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA---PT 252 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~---~~ 252 (532)
||||+...-.-|-...+++++-..+..+|++ +.-. .+... ..
T Consensus 1 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~-~~~~----------------------------------~~~~~~~~~~ 45 (268)
T cd06306 1 KLCVLYPHLKDAYWLSVNYGMVEEAKRLGVS-LKLL----------------------------------EAGGYPNLAK 45 (268)
T ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHHHcCCE-EEEe----------------------------------cCCCCCCHHH
Confidence 4677776555666777777777777777763 3210 01111 12
Q ss_pred HHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 253 VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
..+.++.+..+++|++++.+.+.+.. . .+ ++++++ +|+||.+
T Consensus 46 ~~~~i~~~~~~~vdgiI~~~~~~~~~-~-~~-~~~~~~--giPvV~~ 87 (268)
T cd06306 46 QIAQLEDCAAWGADAILLGAVSPDGL-N-EI-LQQVAA--SIPVIAL 87 (268)
T ss_pred HHHHHHHHHHcCCCEEEEcCCChhhH-H-HH-HHHHHC--CCCEEEe
Confidence 23567788889999999998664321 1 23 334444 4666655
No 298
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=29.54 E-value=5.6e+02 Score=28.14 Aligned_cols=72 Identities=14% Similarity=0.222 Sum_probs=39.5
Q ss_pred EEEcCCCCCCCCChhHHHHHHHHHHhccCceEEEe---eccccchh--------------hcc-cccccCCCCccccchH
Q 009559 367 ICLIPESPFNLHGPNGVLRHLKYLIETKGSAVVCV---AEGAGQSL--------------IKK-TNATDASGNIVLGDVG 428 (532)
Q Consensus 367 ~~LIPE~pf~leg~~~ll~~lk~~~~~kg~~VVVV---AEGag~~l--------------~~~-~~~~DasGn~~l~dIg 428 (532)
+-||++.++... -++.|++.+++.|.-++++ +|+....+ +++ .....|.-|..++..+
T Consensus 170 VNiig~~~~~~~----d~~elk~lL~~~Gl~~~~l~d~s~~ld~~~~~~~~~~~~~gg~t~eei~~~~~A~lniv~~~~~ 245 (432)
T TIGR01285 170 VNLLVGSLLTPG----DIEELRRMVEAFGLKPIILPDLSRSLDGHLADDDFSPITQGGTTLEQIRQIGQSCCTLAIGESM 245 (432)
T ss_pred EEEEcCCCCCcc----CHHHHHHHHHHcCCceEEecccccccCCCCCCCccceeCCCCCcHHHHHhhccCcEEEEEChhH
Confidence 445566655532 3577888888888777665 33321110 000 1122444466666666
Q ss_pred HHHHHHHHHHHHhcCcc
Q 009559 429 VLIQQETKKYFKEIGVP 445 (532)
Q Consensus 429 ~~L~~~I~~~f~~~g~~ 445 (532)
..+++.++++| |++
T Consensus 246 ~~~a~~Lee~~---giP 259 (432)
T TIGR01285 246 RRAASLLADRC---GVP 259 (432)
T ss_pred HHHHHHHHHHH---CCC
Confidence 67777777765 655
No 299
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.49 E-value=5.1e+02 Score=24.74 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
.++++.+.+.++|++++.+.+..... ..+++++. +++||.+
T Consensus 45 ~~~i~~~~~~~vdgiii~~~~~~~~~---~~~~~~~~--~ipvV~~ 85 (268)
T cd06289 45 EQLLSTMLEHGVAGIILCPAAGTSPD---LLKRLAES--GIPVVLV 85 (268)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCccHH---HHHHHHhc--CCCEEEE
Confidence 35677888899999999987654321 22344443 4677765
No 300
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=29.24 E-value=3.2e+02 Score=27.19 Aligned_cols=49 Identities=6% Similarity=0.079 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChh---------hHHHHHHHHHHHHhcCCCceEeeee
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNG---------THAGANAIHNECRKRRMKVAVVGVP 300 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdG---------T~~gA~~L~ee~~kr~~~I~VIGIP 300 (532)
..++.++.++++|++.+=+-..+. +-..+..|.+.+++.|+.|+.++.+
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~ 74 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLS 74 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecc
Confidence 568888888999988885533211 2334667777788888877766544
No 301
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=29.22 E-value=7.6e+02 Score=28.00 Aligned_cols=137 Identities=15% Similarity=0.187 Sum_probs=80.2
Q ss_pred HHHHHHHHHHcCCceEEEEccccc-ccccCCceeecCCHHHHhhhhh---cCC-cceecccCCccHHHHHHHHHH--hCC
Q 009559 193 IRHIVITLEIYGVKNIVGIPFGYR-GFCDKELTEMPLSRKVVQNIHL---SGG-SLLGVSRGAPTVSEIVDSMEE--RGI 265 (532)
Q Consensus 193 Ir~iv~~l~~ygv~~V~Gi~~Gy~-GL~~~~~~~i~Lt~~~V~~i~~---~GG-SiLGTSR~~~~~~~ivd~L~~--~gI 265 (532)
-..+++.|..+|+++|||+.++.. .|+ +.+.. .|+ .++ .+|......-+.+..-+ .++
T Consensus 13 ~~~l~~~L~~~GV~~vFgipG~~~~~l~--------------d~l~~~~~~~~i~~i-~~rhE~~A~~~Adgyar~tg~~ 77 (585)
T CHL00099 13 AFALIDSLVRHGVKHIFGYPGGAILPIY--------------DELYAWEKKGLIKHI-LVRHEQGAAHAADGYARSTGKV 77 (585)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcchHHHH--------------HHHHhcCcCCCceEE-EecCHHHHHHHHHHHHHhcCCc
Confidence 345788889999999999887632 222 22221 222 234 24544433334444333 358
Q ss_pred cEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCC---------------hhhHHHHHHHHHHHH
Q 009559 266 NMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFG---------------FDTAVEEAQRAINSA 330 (532)
Q Consensus 266 d~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfG---------------FdTAv~~a~~aI~~a 330 (532)
-.+++.-|=|......-|++... -.++|+.|-...+....+.+.--. .-+..+.+.+.++.+
T Consensus 78 gv~~~t~GPG~~N~l~gl~~A~~---~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A 154 (585)
T CHL00099 78 GVCFATSGPGATNLVTGIATAQM---DSVPLLVITGQVGRAFIGTDAFQEVDIFGITLPIVKHSYVVRDARDISRIVAEA 154 (585)
T ss_pred EEEEECCCCcHHHHHHHHHHHhh---cCCCEEEEecCCCccccCCCCccccchhhhhcCceeEEEEeCCHHHHHHHHHHH
Confidence 88899989999888888876433 257788887655433222211000 112345677778777
Q ss_pred HHhhhhccccEEEEEec
Q 009559 331 YIEAHSAYHGIGIVKLM 347 (532)
Q Consensus 331 ~~eA~S~~~~V~vVevM 347 (532)
...|.+.+.|-..+++-
T Consensus 155 ~~~A~~~~~GPV~l~iP 171 (585)
T CHL00099 155 FYIAKHGRPGPVLIDIP 171 (585)
T ss_pred HHHHccCCCCeEEEecC
Confidence 77777655565556653
No 302
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=29.18 E-value=3.9e+02 Score=28.64 Aligned_cols=48 Identities=23% Similarity=0.526 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhC---CcEEEEe----CChhhHHHHHHHHHHHHhcC--CCceEeeeec
Q 009559 253 VSEIVDSMEERG---INMLFVL----GGNGTHAGANAIHNECRKRR--MKVAVVGVPK 301 (532)
Q Consensus 253 ~~~ivd~L~~~g---Id~L~vI----GGdGT~~gA~~L~ee~~kr~--~~I~VIGIPK 301 (532)
.++|.+.|+... .+++|++ ||-||-.+ ..|++.+++.. +.++++..|-
T Consensus 83 ~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~-p~iae~lke~~~~~~~~iv~~P~ 139 (349)
T cd02202 83 LEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGA-PVLAKELKERYEEPVYALGVLPA 139 (349)
T ss_pred HHHHHHHHhccccccccEEEEecccCCCccccHH-HHHHHHHHHhCCccEEEEEEecC
Confidence 455777777654 8999987 55566543 55667777653 4466666664
No 303
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=29.12 E-value=3.4e+02 Score=27.60 Aligned_cols=61 Identities=8% Similarity=0.098 Sum_probs=42.4
Q ss_pred hhhhhcCCcceecccC---CccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEe
Q 009559 234 QNIHLSGGSLLGVSRG---APTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVV 297 (532)
Q Consensus 234 ~~i~~~GGSiLGTSR~---~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VI 297 (532)
+.+...|+.+.++.+. ..+...++..|++.+-|.+++.+..+ .+..+.+.+++.|++..++
T Consensus 159 ~~~~~~g~~v~~~~~~~~~~~d~~~~v~~i~~~~~d~vi~~~~~~---~~~~~~~~~~~~g~~~~~~ 222 (344)
T cd06348 159 KALRDQGLNLVTVQTFQTGDTDFQAQITAVLNSKPDLIVISALAA---DGGNLVRQLRELGYNGLIV 222 (344)
T ss_pred HHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEECCcch---hHHHHHHHHHHcCCCCcee
Confidence 3444578888877654 34778889999999999877666443 2345667778888876554
No 304
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=28.76 E-value=9e+02 Score=27.41 Aligned_cols=185 Identities=15% Similarity=0.123 Sum_probs=101.1
Q ss_pred HHHHHHHHHcCCceEEEEcccc-cccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHHHHHHHH--hCCcEEEE
Q 009559 194 RHIVITLEIYGVKNIVGIPFGY-RGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEIVDSMEE--RGINMLFV 270 (532)
Q Consensus 194 r~iv~~l~~ygv~~V~Gi~~Gy-~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ivd~L~~--~gId~L~v 270 (532)
..+++.|..+|++.|||+.++. ..|++ .+...|=.++ .+|......-+.+..-+ .++-.+++
T Consensus 10 ~~l~~~L~~~GV~~vFGvpG~~~~~l~d--------------al~~~~i~~i-~~rhE~~A~~~Adgyar~tg~~gv~~~ 74 (588)
T PRK07525 10 EAFVETLQAHGITHAFGIIGSAFMDASD--------------LFPPAGIRFI-DVAHEQNAGHMADGYTRVTGRMGMVIG 74 (588)
T ss_pred HHHHHHHHHcCCCEEEEeCCCchHHHHH--------------HHhccCCCEE-EecCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 5678888899999999998763 33332 2222222344 24444333334444433 35788888
Q ss_pred eCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCC--ccCChh-------------hHHHHHHHHHHHHHHhhh
Q 009559 271 LGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMD--KTFGFD-------------TAVEEAQRAINSAYIEAH 335 (532)
Q Consensus 271 IGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD--~SfGFd-------------TAv~~a~~aI~~a~~eA~ 335 (532)
-.|=|.......|++... -+++|+.|-...+..-...+ +.+-.. +..+.+.+.++.+...|.
T Consensus 75 t~GPG~~n~~~gi~~A~~---~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~i~~~~~~~~~i~rA~~~A~ 151 (588)
T PRK07525 75 QNGPGITNFVTAVATAYW---AHTPVVLVTPQAGTKTIGQGGFQEAEQMPMFEDMTKYQEEVRDPSRMAEVLNRVFDKAK 151 (588)
T ss_pred cCCccHHHHHHHHHHHhh---cCCCEEEEeCCCCcccCCCCCCcccchhhhhhhheeEEEECCCHHHHHHHHHHHHHHHh
Confidence 889999988888876533 35788888766554322111 000000 123456677777777777
Q ss_pred hccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccCceEEEeecccc
Q 009559 336 SAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVVCVAEGAG 406 (532)
Q Consensus 336 S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg~~VVVVAEGag 406 (532)
+- +|-..+++- ++ +.. ... . ... ..|-...........++.+.+++.+-.+-+|++.-|+.
T Consensus 152 ~~-~GPV~i~iP-~D---v~~--~~~-~-~~~-~~~~~~~~~~~~~~~i~~a~~~L~~A~rPvil~G~g~~ 212 (588)
T PRK07525 152 RE-SGPAQINIP-RD---YFY--GVI-D-VEI-PQPVRLERGAGGEQSLAEAAELLSEAKFPVILSGAGVV 212 (588)
T ss_pred cC-CCCEEEEcC-hh---Hhh--hhc-c-ccc-CccccCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 64 566667764 22 110 000 0 000 00000011111234567777777777788888888773
No 305
>PRK04155 chaperone protein HchA; Provisional
Probab=28.75 E-value=6.5e+02 Score=26.30 Aligned_cols=41 Identities=17% Similarity=0.341 Sum_probs=26.7
Q ss_pred cHHHHHHHHH--HhCCcEEEEeCChhhHHH------HHHHHHHHHhcCC
Q 009559 252 TVSEIVDSME--ERGINMLFVLGGNGTHAG------ANAIHNECRKRRM 292 (532)
Q Consensus 252 ~~~~ivd~L~--~~gId~L~vIGGdGT~~g------A~~L~ee~~kr~~ 292 (532)
..+++++... ....++||+-||-|.+.. ..+|.+++.+.+.
T Consensus 133 ~l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K 181 (287)
T PRK04155 133 KLADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDR 181 (287)
T ss_pred eHHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCC
Confidence 4556655555 568999999999988653 3444455555443
No 306
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=28.67 E-value=6e+02 Score=26.48 Aligned_cols=103 Identities=11% Similarity=0.006 Sum_probs=64.0
Q ss_pred cchHHHHHHHHHHHHHH-c----CCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC---ccHHHHH
Q 009559 186 CPGLNDVIRHIVITLEI-Y----GVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA---PTVSEIV 257 (532)
Q Consensus 186 cPGlNavIr~iv~~l~~-y----gv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~---~~~~~iv 257 (532)
.|........+++.+.. . +.++|.-+..-+. +- ..+-....+.+...|+.+.+..+.. .|....+
T Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~~~~kvaiv~~~~~--~g-----~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v 188 (351)
T cd06334 116 GPTYSDQARALVQYIAEQEGGKLKGKKIALVYHDSP--FG-----KEPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQW 188 (351)
T ss_pred CCCHHHHHHHHHHHHHHhcccCCCCCeEEEEeCCCc--cc-----hhhHHHHHHHHHHcCCeeeeeccCCCCcccHHHHH
Confidence 45555666777777654 3 3667665543221 10 0112222344556788888777754 4788899
Q ss_pred HHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEee
Q 009559 258 DSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVG 298 (532)
Q Consensus 258 d~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIG 298 (532)
..+++.+-|+||+.+-.. .+..+.+.+++.|++..+++
T Consensus 189 ~~i~~~~pd~V~~~~~~~---~~~~~~~~~~~~G~~~~~~~ 226 (351)
T cd06334 189 LQIRRSGPDYVILWGWGV---MNPVAIKEAKRVGLDDKFIG 226 (351)
T ss_pred HHHHHcCCCEEEEecccc---hHHHHHHHHHHcCCCceEEE
Confidence 999999999998775554 33445567777888766664
No 307
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=28.52 E-value=6e+02 Score=25.28 Aligned_cols=86 Identities=14% Similarity=0.098 Sum_probs=50.5
Q ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc-cHHH
Q 009559 177 AAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP-TVSE 255 (532)
Q Consensus 177 iaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~-~~~~ 255 (532)
||++...-.-|-.+.++.++.+.+.++|...++- .+.++... ...+
T Consensus 1 Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~i~---------------------------------~~~~~~d~~~q~~ 47 (302)
T TIGR02637 1 IGLVVKSLGNPFFEAANKGAEEAAKELGSVYIIY---------------------------------TGPTGTTAEGQIE 47 (302)
T ss_pred CEEEeccCCCHHHHHHHHHHHHHHHHhCCeeEEE---------------------------------ECCCCCCHHHHHH
Confidence 4566666566788888888888887777311210 01111111 2346
Q ss_pred HHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 256 IVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 256 ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
.++.+...++|++++.+-|.+ ......+++++++ |+||.+
T Consensus 48 ~i~~l~~~~vdgiIi~~~~~~--~~~~~l~~~~~~g--iPvV~~ 87 (302)
T TIGR02637 48 VVNSLIAQKVDAIAISANDPD--ALVPALKKAMKRG--IKVVTW 87 (302)
T ss_pred HHHHHHHcCCCEEEEeCCChH--HHHHHHHHHHHCC--CEEEEe
Confidence 788888899999999986532 1122224444444 677754
No 308
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=28.24 E-value=1.4e+02 Score=30.88 Aligned_cols=54 Identities=24% Similarity=0.304 Sum_probs=34.9
Q ss_pred CcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCcc-CChhhHHHHHHH
Q 009559 265 INMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKT-FGFDTAVEEAQR 325 (532)
Q Consensus 265 Id~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~S-fGFdTAv~~a~~ 325 (532)
-|.|||+- +..-..++. |+. .++|+||++=-| |+|..++|+- +|=|=|.+.++-
T Consensus 157 Pd~l~ViD---p~~e~iAv~-EA~--klgIPVvAlvDT-n~dpd~VD~~IP~Ndda~rsi~L 211 (252)
T COG0052 157 PDVLFVID---PRKEKIAVK-EAN--KLGIPVVALVDT-NCDPDGVDYVIPGNDDAIRSIAL 211 (252)
T ss_pred CCEEEEeC---CcHhHHHHH-HHH--HcCCCEEEEecC-CCCCccCceeecCCChHHHHHHH
Confidence 78999985 444555564 333 478999999777 6777777754 355555554443
No 309
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.
Probab=28.20 E-value=5.1e+02 Score=28.48 Aligned_cols=107 Identities=17% Similarity=0.320 Sum_probs=57.8
Q ss_pred HHHHHHHHHHh-------CCcEEEEeCChhhHHHHH----HHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHH
Q 009559 253 VSEIVDSMEER-------GINMLFVLGGNGTHAGAN----AIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVE 321 (532)
Q Consensus 253 ~~~ivd~L~~~-------gId~L~vIGGdGT~~gA~----~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~ 321 (532)
..++.+.+.+. +++. ++|||.|-.+.-. .|..++.+ .|+.+ + |++..+ --|+.-+++
T Consensus 194 ~~~Vae~~~~~f~~~~~~~v~~-IIlaGpg~~K~~f~~~~~l~~~l~~-----kvi~~---v--dvs~gg-~~gl~E~l~ 261 (409)
T TIGR00108 194 LKKVGEVANEAFLPNDDVKLKG-IILGGPGHTKEEFAEGEYLHHELKK-----KVIST---V--DVSYTG-EFGIRELIE 261 (409)
T ss_pred HHHHHHHHHHHhhhcccccceE-EEEeccHHHHHHhhhhhhHHHHhhh-----hEEEE---E--EcCCCc-ccCHHHHHH
Confidence 35566654444 5565 5667777665411 34444433 23322 2 444333 336777777
Q ss_pred HHHHHHHHHHHhhhh-ccccEEEEEecCCCc-----cHHHHHHhHhcCCccEEEcCCC
Q 009559 322 EAQRAINSAYIEAHS-AYHGIGIVKLMGRSS-----GYIAMHASLASGQIDICLIPES 373 (532)
Q Consensus 322 ~a~~aI~~a~~eA~S-~~~~V~vVevMGR~s-----G~LA~~aaLAsg~ad~~LIPE~ 373 (532)
.+.+.+.+.+..-.. .-.. |.+-++++. |.=...-||..|.++-.||+|.
T Consensus 262 ~~~~~L~~~k~~~E~~lle~--F~~ei~~d~G~avyG~~eV~~ALe~GAVetLLV~d~ 317 (409)
T TIGR00108 262 KSADVLAEVDYMREKKLVQR--FLKELIQEDGLACYGEDEVLKALDLGAVETLIVSED 317 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHhcCCCcEEeCHHHHHHHHHhCCCcEEEEecc
Confidence 776666664432111 1111 122334443 5556778899999999999986
No 310
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=28.19 E-value=1.2e+02 Score=31.79 Aligned_cols=55 Identities=20% Similarity=0.300 Sum_probs=34.0
Q ss_pred HHHhhhhhcCCcceecccCCccHHH-----------------------------HHHHHHHh-CCcEEEE-eCChhhHHH
Q 009559 231 KVVQNIHLSGGSLLGVSRGAPTVSE-----------------------------IVDSMEER-GINMLFV-LGGNGTHAG 279 (532)
Q Consensus 231 ~~V~~i~~~GGSiLGTSR~~~~~~~-----------------------------ivd~L~~~-gId~L~v-IGGdGT~~g 279 (532)
-.|......||.++-+.|+..++++ ..+.|++- .||+||+ +||-|-+.+
T Consensus 110 ~Kv~a~~~Yga~ii~~e~~~~sRE~va~~ltee~g~~~i~Py~~p~vIaGqgTiA~ElleqVg~iDalfvpvgGGGllSg 189 (323)
T KOG1251|consen 110 CKVAATRGYGANIIFCEPTVESRESVAKDLTEETGYYLIHPYNHPSVIAGQGTIALELLEQVGEIDALFVPVGGGGLLSG 189 (323)
T ss_pred HHHHHHHhcCceEEEecCccchHHHHHHHHHHhcCcEEeCCCCCcceeeccchHHHHHHHhhCccceEEEeecCcchhhH
Confidence 4577777788888877776544332 23334332 5788876 677776666
Q ss_pred HHHHHH
Q 009559 280 ANAIHN 285 (532)
Q Consensus 280 A~~L~e 285 (532)
....+.
T Consensus 190 vAlaa~ 195 (323)
T KOG1251|consen 190 VALAAK 195 (323)
T ss_pred HHHHHh
Confidence 554443
No 311
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=28.14 E-value=70 Score=30.32 Aligned_cols=44 Identities=23% Similarity=0.334 Sum_probs=28.3
Q ss_pred hCCcEEEEeCChhhHHHHH---HHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHH
Q 009559 263 RGINMLFVLGGNGTHAGAN---AIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEE 322 (532)
Q Consensus 263 ~gId~L~vIGGdGT~~gA~---~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~ 322 (532)
.++|++++.||.++-.... .+.+.+. -+++|.|| |+|++-.+..
T Consensus 41 ~~~dgvil~gG~~~~~~~~~~~~i~~~~~---~~~PvlGI-------------C~G~Qlla~~ 87 (184)
T cd01743 41 LNPDAIVISPGPGHPEDAGISLEIIRALA---GKVPILGV-------------CLGHQAIAEA 87 (184)
T ss_pred cCCCEEEECCCCCCcccchhHHHHHHHHh---cCCCEEEE-------------CHhHHHHHHH
Confidence 5799999999999854332 2222221 24667776 9999866443
No 312
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=28.09 E-value=61 Score=25.81 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=21.1
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHH
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGAN 281 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~ 281 (532)
.+..+.|++++|| |+.||+-|+.-|.
T Consensus 13 p~~a~vf~~~gID--fCCgG~~~L~eA~ 38 (56)
T PF04405_consen 13 PRAARVFRKYGID--FCCGGNRSLEEAC 38 (56)
T ss_pred hHHHHHHHHcCCc--ccCCCCchHHHHH
Confidence 3567889999999 7899999887554
No 313
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=27.95 E-value=57 Score=31.31 Aligned_cols=49 Identities=20% Similarity=0.227 Sum_probs=31.6
Q ss_pred HHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhH
Q 009559 258 DSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTA 319 (532)
Q Consensus 258 d~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTA 319 (532)
+.+++++.++|++-||-++-.-.......++.-..+++|+|| |+|++.-
T Consensus 37 ~~~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGI-------------C~G~Qll 85 (191)
T PRK06774 37 TDIEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGV-------------CLGHQAL 85 (191)
T ss_pred HHHHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEE-------------CHHHHHH
Confidence 345677999999999999864432222222222235778887 8998754
No 314
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=27.94 E-value=5.6e+02 Score=28.89 Aligned_cols=192 Identities=12% Similarity=0.104 Sum_probs=97.4
Q ss_pred HHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHHHHHHH--HhCCcEEEE
Q 009559 193 IRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEIVDSME--ERGINMLFV 270 (532)
Q Consensus 193 Ir~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ivd~L~--~~gId~L~v 270 (532)
-..+++.|..+|++.|||+.++ ++. + .++.+...+=.++ .+|......-+.+..- ..++-.+++
T Consensus 13 ~~~l~~~L~~~GV~~vFGvpG~--~~~-------~----l~~~~~~~~i~~i-~~rhE~~A~~mAdgyar~tg~~gv~~~ 78 (569)
T PRK09259 13 FHLVIDALKLNGIDTIYGVVGI--PIT-------D----LARLAQAEGIRYI-GFRHEQSAGNAAAAAGFLTQKPGVCLT 78 (569)
T ss_pred HHHHHHHHHHcCCCEEEeCCCc--chH-------H----HHHHHhhCCCCEE-eeCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3567888899999999998774 111 0 1122222233444 3454433333333322 246888888
Q ss_pred eCChhhHHHHHHHHHHHHhcCCCceEeeeeccccc--------CCCCCCcc---------CChhhHHHHHHHHHHHHHHh
Q 009559 271 LGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDN--------DILLMDKT---------FGFDTAVEEAQRAINSAYIE 333 (532)
Q Consensus 271 IGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDN--------DI~~tD~S---------fGFdTAv~~a~~aI~~a~~e 333 (532)
-.|=|......-|++... -+++|+.|-....- ++..+|.. -..-+-.+.+.+.++.+...
T Consensus 79 t~GPG~~N~l~gl~~A~~---~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~~~~~~~~~i~~A~~~ 155 (569)
T PRK09259 79 VSAPGFLNGLTALANATT---NCFPMIMISGSSEREIVDLQQGDYEELDQLNAAKPFCKAAFRVNRAEDIGIGVARAIRT 155 (569)
T ss_pred cCCccHHHHHHHHHHHHh---cCCCEEEEEccCCcccccccCCCccccchhhhhhhheeeeEEcCCHHHHHHHHHHHHHH
Confidence 899999988888886543 24667766544332 22211210 01112245666777777777
Q ss_pred hhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcC--CCCCCCCChhHHHHHHHHHHhccCceEEEeecccc
Q 009559 334 AHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIP--ESPFNLHGPNGVLRHLKYLIETKGSAVVCVAEGAG 406 (532)
Q Consensus 334 A~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIP--E~pf~leg~~~ll~~lk~~~~~kg~~VVVVAEGag 406 (532)
|.+.+.|-..+++- ++- ..... ....+.--+.+ ..+.........++.+.++++.-.+-+|++.-|+.
T Consensus 156 A~~~~~GPV~l~iP-~Dv--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIi~G~g~~ 225 (569)
T PRK09259 156 AVSGRPGGVYLDLP-AKV--LAQTM--DADEALTSLVKVVDPAPAQLPAPEAVDRALDLLKKAKRPLIILGKGAA 225 (569)
T ss_pred hhhCCCCcEEEEeC-HHH--hhCcc--cccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECcCcc
Confidence 77755554455553 221 00000 00000000000 00011111134566666777777788888887774
No 315
>PRK13018 cell division protein FtsZ; Provisional
Probab=27.84 E-value=8.3e+02 Score=26.70 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=19.3
Q ss_pred HHHHHHHHhccCceEEEeeccccc
Q 009559 384 LRHLKYLIETKGSAVVCVAEGAGQ 407 (532)
Q Consensus 384 l~~lk~~~~~kg~~VVVVAEGag~ 407 (532)
+..|+..++..|.+++-++|+-++
T Consensus 227 f~dv~~vl~~~G~a~iG~G~a~g~ 250 (378)
T PRK13018 227 FADVKSVMKGGGVAMMGVGEAKGQ 250 (378)
T ss_pred HHHHHHHhccCCEEEEEEEEecCC
Confidence 567888888889999999887654
No 316
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=27.80 E-value=5.4e+02 Score=24.52 Aligned_cols=83 Identities=12% Similarity=0.133 Sum_probs=53.0
Q ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc-cHHH
Q 009559 177 AAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP-TVSE 255 (532)
Q Consensus 177 iaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~-~~~~ 255 (532)
|++|.....-|-...++.++.+.+..+|+ +++-+ .+...+ ....
T Consensus 2 i~~v~~~~~~~~~~~~~~~i~~~~~~~g~-~~~~~----------------------------------~~~~~~~~~~~ 46 (267)
T cd06284 2 ILVLVPDIANPFFSEILKGIEDEAREAGY-GVLLG----------------------------------DTRSDPEREQE 46 (267)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHHcCC-eEEEe----------------------------------cCCCChHHHHH
Confidence 67777777788888899999998888887 34310 011111 1235
Q ss_pred HHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeec
Q 009559 256 IVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPK 301 (532)
Q Consensus 256 ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPK 301 (532)
+++.+.+.++|++++.+.+.... +.+.. +. +++||.+-.
T Consensus 47 ~~~~~~~~~vdgiii~~~~~~~~----~~~~~-~~--~ipvv~~~~ 85 (267)
T cd06284 47 YLDLLRRKQADGIILLDGSLPPT----ALTAL-AK--LPPIVQACE 85 (267)
T ss_pred HHHHHHHcCCCEEEEecCCCCHH----HHHHH-hc--CCCEEEEec
Confidence 67788999999999988764432 11222 22 577776633
No 317
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=27.68 E-value=47 Score=31.65 Aligned_cols=48 Identities=25% Similarity=0.501 Sum_probs=29.9
Q ss_pred cCCccHHHHHHHHHHhCCcEEEEeCCh-hhHHHHHHHHHHHHhcCCCceEeeeecc
Q 009559 248 RGAPTVSEIVDSMEERGINMLFVLGGN-GTHAGANAIHNECRKRRMKVAVVGVPKT 302 (532)
Q Consensus 248 R~~~~~~~ivd~L~~~gId~L~vIGGd-GT~~gA~~L~ee~~kr~~~I~VIGIPKT 302 (532)
|..+.+.++++++++.+++.++.+-|- +.+-+ .++-. ...+|||||-.
T Consensus 39 R~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpg--vva~~-----t~~PVIgvP~~ 87 (150)
T PF00731_consen 39 RTPERLLEFVKEYEARGADVIIAVAGMSAALPG--VVASL-----TTLPVIGVPVS 87 (150)
T ss_dssp TSHHHHHHHHHHTTTTTESEEEEEEESS--HHH--HHHHH-----SSS-EEEEEE-
T ss_pred CCHHHHHHHHHHhccCCCEEEEEECCCcccchh--hheec-----cCCCEEEeecC
Confidence 555567788888888888877776554 33333 23322 46899999954
No 318
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=27.25 E-value=80 Score=26.60 Aligned_cols=38 Identities=18% Similarity=0.399 Sum_probs=29.0
Q ss_pred cCCcceecccCCccHHHHHHHHHHhCCcEEEEeCChhhHH
Q 009559 239 SGGSLLGVSRGAPTVSEIVDSMEERGINMLFVLGGNGTHA 278 (532)
Q Consensus 239 ~GGSiLGTSR~~~~~~~ivd~L~~~gId~L~vIGGdGT~~ 278 (532)
.++-+|=+. ....+.+.+.|+++++..+++|||.++..
T Consensus 49 ~~~PIll~~--~~l~~~~~~~l~~~~~~~v~iiGg~~~is 86 (92)
T PF04122_consen 49 NNAPILLVN--NSLPSSVKAFLKSLNIKKVYIIGGEGAIS 86 (92)
T ss_pred cCCeEEEEC--CCCCHHHHHHHHHcCCCEEEEECCCCccC
Confidence 455566566 22337888889999999999999998764
No 319
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=26.99 E-value=1.8e+02 Score=31.25 Aligned_cols=62 Identities=18% Similarity=0.251 Sum_probs=49.0
Q ss_pred CHHHHhhhhhcCCcceecccCCccHHHHHHHHHHhCCcEEE--------------EeCChhhHHHHHHHHHHHHhcCCC
Q 009559 229 SRKVVQNIHLSGGSLLGVSRGAPTVSEIVDSMEERGINMLF--------------VLGGNGTHAGANAIHNECRKRRMK 293 (532)
Q Consensus 229 t~~~V~~i~~~GGSiLGTSR~~~~~~~ivd~L~~~gId~L~--------------vIGGdGT~~gA~~L~ee~~kr~~~ 293 (532)
+-..+..+-++||++.-+. -..+.+.+.|+.+|||.+= +-||++-+..+..|++.+++.|++
T Consensus 44 Dis~l~~lE~~Gvkf~d~n---g~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmK 119 (403)
T COG3867 44 DISSLIELENSGVKFFDTN---GVRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMK 119 (403)
T ss_pred cHHHHHHHHHcCceEEccC---ChHHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcE
Confidence 3345666788899888542 2467899999999999875 369999999999999988877765
No 320
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=26.82 E-value=1.9e+02 Score=27.20 Aligned_cols=49 Identities=18% Similarity=0.396 Sum_probs=34.8
Q ss_pred HHhCCcEEEEeCChhhHH---HHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHH
Q 009559 261 EERGINMLFVLGGNGTHA---GANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQ 324 (532)
Q Consensus 261 ~~~gId~L~vIGGdGT~~---gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~ 324 (532)
...+.|++++-||-++.. ....+.+++.+ .+++++|| |+|++..+...-
T Consensus 39 ~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~--~~~PilGI-------------C~G~Q~la~~~G 90 (192)
T PF00117_consen 39 DLDDYDGIIISGGPGSPYDIEGLIELIREARE--RKIPILGI-------------CLGHQILAHALG 90 (192)
T ss_dssp HTTTSSEEEEECESSSTTSHHHHHHHHHHHHH--TTSEEEEE-------------THHHHHHHHHTT
T ss_pred hhcCCCEEEECCcCCccccccccccccccccc--cceEEEEE-------------eehhhhhHHhcC
Confidence 567999999999988765 33344455544 35788888 999988755443
No 321
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=26.64 E-value=6e+02 Score=24.65 Aligned_cols=84 Identities=12% Similarity=0.133 Sum_probs=50.6
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC-ccHH
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA-PTVS 254 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~-~~~~ 254 (532)
+||+|.. -.-|-.+.++.++...+.++|+. +.-+. ++... ....
T Consensus 1 ~i~~v~~-~~~~~~~~~~~gi~~~~~~~g~~-~~~~~---------------------------------~~~~~~~~~~ 45 (271)
T cd06314 1 TIAVVTN-GASPFWKIAEAGVKAAGKELGVD-VEFVV---------------------------------PQQGTVNAQL 45 (271)
T ss_pred CeEEEcC-CCcHHHHHHHHHHHHHHHHcCCe-EEEeC---------------------------------CCCCCHHHHH
Confidence 3566653 35688888999998888888873 32110 11111 1234
Q ss_pred HHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 255 EIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
+.++.|...++|++++...+-. ....+.+++.+ +++||.+
T Consensus 46 ~~i~~l~~~~vDgiIi~~~~~~--~~~~~l~~~~~---~ipvV~~ 85 (271)
T cd06314 46 RMLEDLIAEGVDGIAISPIDPK--AVIPALNKAAA---GIKLITT 85 (271)
T ss_pred HHHHHHHhcCCCEEEEecCChh--HhHHHHHHHhc---CCCEEEe
Confidence 6778888899999999986631 11222233333 5677765
No 322
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=26.57 E-value=3.3e+02 Score=27.61 Aligned_cols=98 Identities=11% Similarity=0.084 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccC---CccHHHHHHHHHHhCCcEE
Q 009559 192 VIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRG---APTVSEIVDSMEERGINML 268 (532)
Q Consensus 192 vIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~---~~~~~~ivd~L~~~gId~L 268 (532)
....++..+...|.+++.-+..-....-. .+-....+.+...|+.+.+.... ..+....+..+.+.+-|++
T Consensus 119 ~~~~~~~~l~~~g~~~~~~i~~~~~~~g~------~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~i~~~~pdaV 192 (341)
T cd06341 119 SLTTWGDFAKDQGGTRAVALVTALSAAVS------AAAALLARSLAAAGVSVAGIVVITATAPDPTPQAQQAAAAGADAI 192 (341)
T ss_pred hhHHHHHHHHHcCCcEEEEEEeCCcHHHH------HHHHHHHHHHHHcCCccccccccCCCCCCHHHHHHHHHhcCCCEE
Confidence 34566777766677666554321110000 01112223344456665554332 2467778888888999999
Q ss_pred EEeCChhhHHHHHHHHHHHHhcCCCceEee
Q 009559 269 FVLGGNGTHAGANAIHNECRKRRMKVAVVG 298 (532)
Q Consensus 269 ~vIGGdGT~~gA~~L~ee~~kr~~~I~VIG 298 (532)
|+.+. +. .+..+.+.+++.|++.+++.
T Consensus 193 ~~~~~-~~--~a~~~~~~~~~~G~~~~~~~ 219 (341)
T cd06341 193 ITVLD-AA--VCASVLKAVRAAGLTPKVVL 219 (341)
T ss_pred EEecC-hH--HHHHHHHHHHHcCCCCCEEE
Confidence 87653 32 34555677777887766553
No 323
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=26.54 E-value=1.2e+02 Score=29.66 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=39.2
Q ss_pred EEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCC--ChhHHHHHHHHHHhccCceEEEeecc
Q 009559 344 VKLMGRSSGYIAMHASLASGQIDICLIPESPFNLH--GPNGVLRHLKYLIETKGSAVVCVAEG 404 (532)
Q Consensus 344 VevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~le--g~~~ll~~lk~~~~~kg~~VVVVAEG 404 (532)
-++-|...=-+++..+|+.. ++++++=|---.+| ....+.+.|++..++++..||+++.-
T Consensus 136 ~~LS~G~~qrv~laral~~~-p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~ 197 (225)
T PRK10247 136 AELSGGEKQRISLIRNLQFM-PKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197 (225)
T ss_pred ccCCHHHHHHHHHHHHHhcC-CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 45666666668899999986 99999855432343 33445555665555557788888754
No 324
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=26.52 E-value=2.6e+02 Score=28.49 Aligned_cols=49 Identities=24% Similarity=0.226 Sum_probs=35.4
Q ss_pred ChhhHHHHHHHHHHHHHHhhhhccccEEEEEecCCCc-cHHHHHHhHhcC
Q 009559 315 GFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSS-GYIAMHASLASG 363 (532)
Q Consensus 315 GFdTAv~~a~~aI~~a~~eA~S~~~~V~vVevMGR~s-G~LA~~aaLAsg 363 (532)
-|.++++.+..++.-+...+......---|=+||-++ |+||+..++..+
T Consensus 125 ~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~ 174 (312)
T COG0657 125 PFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAAR 174 (312)
T ss_pred CCCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHH
Confidence 7999999999999888766531100112356789888 689999888876
No 325
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=26.44 E-value=6.6e+02 Score=25.05 Aligned_cols=22 Identities=5% Similarity=0.083 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCcEEEEeCChh
Q 009559 254 SEIVDSMEERGINMLFVLGGNG 275 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdG 275 (532)
.+.++.+..+++|++++.+.+.
T Consensus 47 ~~~i~~l~~~~vDgiIi~~~~~ 68 (295)
T TIGR02955 47 LAQIEQCKSWGADAILLGTVSP 68 (295)
T ss_pred HHHHHHHHHcCCCEEEEecCCh
Confidence 4678888999999999987653
No 326
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=26.38 E-value=3.5e+02 Score=25.67 Aligned_cols=86 Identities=23% Similarity=0.383 Sum_probs=55.7
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHH-HHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCcc
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITL-EIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPT 252 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l-~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~ 252 (532)
..++.++ | -.|+..+ .++..+ ..|.--+|.|.++||-+..+. .+.++.|...+-.++=.+=+.|.
T Consensus 46 ~~~v~ll--G-~~~~~~~---~~~~~l~~~yp~l~i~g~~~g~~~~~~~--------~~i~~~I~~~~pdiv~vglG~Pk 111 (171)
T cd06533 46 GLRVFLL--G-AKPEVLE---KAAERLRARYPGLKIVGYHHGYFGPEEE--------EEIIERINASGADILFVGLGAPK 111 (171)
T ss_pred CCeEEEE--C-CCHHHHH---HHHHHHHHHCCCcEEEEecCCCCChhhH--------HHHHHHHHHcCCCEEEEECCCCH
Confidence 4666666 3 4444444 444445 345533799999999875332 33688888888877767777776
Q ss_pred HHHHHHHHHH-hCCcEEEEeCC
Q 009559 253 VSEIVDSMEE-RGINMLFVLGG 273 (532)
Q Consensus 253 ~~~ivd~L~~-~gId~L~vIGG 273 (532)
-|..+..+++ .+-..++.+||
T Consensus 112 QE~~~~~~~~~l~~~v~~~vG~ 133 (171)
T cd06533 112 QELWIARHKDRLPVPVAIGVGG 133 (171)
T ss_pred HHHHHHHHHHHCCCCEEEEece
Confidence 6765544444 46777888898
No 327
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=26.35 E-value=4.9e+02 Score=26.53 Aligned_cols=62 Identities=8% Similarity=0.182 Sum_probs=41.0
Q ss_pred hhhhhcCCcceecccCC---ccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEee
Q 009559 234 QNIHLSGGSLLGVSRGA---PTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVG 298 (532)
Q Consensus 234 ~~i~~~GGSiLGTSR~~---~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIG 298 (532)
+.+...|+++....+.. .+....+..|++.+-+++++.+-.+. +..+.+.+++.+++...++
T Consensus 166 ~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~~---~~~~~~~~~~~g~~~~~~~ 230 (344)
T cd06345 166 ALLPEAGLEVVSVERFSPDTTDFTPILQQIKAADPDVIIAGFSGNV---GVLFTQQWAEQKVPIPTIG 230 (344)
T ss_pred HHHHHcCCeEEEEEecCCCCCchHHHHHHHHhcCCCEEEEeecCch---HHHHHHHHHHcCCCCceEE
Confidence 34445677887765543 46788999999999998877665442 2334566667777655544
No 328
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=26.35 E-value=2.1e+02 Score=29.46 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=47.6
Q ss_pred CcceecccCCccHH--HHHHHHHHhCCcEEEEeC-----ChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCC
Q 009559 241 GSLLGVSRGAPTVS--EIVDSMEERGINMLFVLG-----GNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDIL 308 (532)
Q Consensus 241 GSiLGTSR~~~~~~--~ivd~L~~~gId~L~vIG-----GdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~ 308 (532)
|++-.-|=|+++.+ +.++..-.+|.|-.+.|- |-+|+.+|..|++.+++.++.+-+.|- .|+|.|-.
T Consensus 55 ~~Vtvvs~Gp~~a~~~~~lr~aLAmGaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~-~s~D~~tg 128 (256)
T PRK03359 55 AQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGD-GSSDLYAQ 128 (256)
T ss_pred CEEEEEEECCcchhhHHHHHHHHHcCCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcC-ccccCCCC
Confidence 44444455555533 566666678999888884 558999999999999988888877774 56665543
No 329
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=26.12 E-value=1.2e+02 Score=29.71 Aligned_cols=58 Identities=22% Similarity=0.317 Sum_probs=36.4
Q ss_pred ecCCCccHHHHHHhHhcCCccEEEcCCCCCCCC--ChhHHHHHHHHHHhccCceEEEeecc
Q 009559 346 LMGRSSGYIAMHASLASGQIDICLIPESPFNLH--GPNGVLRHLKYLIETKGSAVVCVAEG 404 (532)
Q Consensus 346 vMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~le--g~~~ll~~lk~~~~~kg~~VVVVAEG 404 (532)
+-|...=-+++..+|+.+ ++++++=|---.+| ....+.+.|++..+++|..||+++.-
T Consensus 146 LSgG~~qrl~la~al~~~-p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~ 205 (233)
T PRK11629 146 LSGGERQRVAIARALVNN-PRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD 205 (233)
T ss_pred CCHHHHHHHHHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 434344447888888876 99999866322343 33455566665544567888888753
No 330
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=25.89 E-value=3.3e+02 Score=27.99 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=39.4
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKT 302 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKT 302 (532)
..++.++.+++.|++++++- |=.+..+..+.+.+++.|+..-...-|.|
T Consensus 105 G~e~f~~~~~~aGvdGviip--DLp~ee~~~~~~~~~~~gl~~I~lvap~t 153 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIP--DLPPEEAEELRAAAKKHGLDLIFLVAPTT 153 (258)
T ss_pred CHHHHHHHHHHcCCcEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 46789999999999999995 66777888888888888887666566665
No 331
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=25.88 E-value=5.2e+02 Score=23.73 Aligned_cols=44 Identities=9% Similarity=0.262 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHh-CCcEEEEeCChhhHHHHHHHHHHHHhcCC---CceEeee
Q 009559 252 TVSEIVDSMEER-GINMLFVLGGNGTHAGANAIHNECRKRRM---KVAVVGV 299 (532)
Q Consensus 252 ~~~~ivd~L~~~-gId~L~vIGGdGT~~gA~~L~ee~~kr~~---~I~VIGI 299 (532)
+.+.+.+.|++. +.+++|+.+. . .+..+.+.+++.|+ ++.+++.
T Consensus 169 ~~~~~~~~l~~~~~~~~i~~~~~-~---~a~~~~~~~~~~g~~~~~~~ii~~ 216 (269)
T cd01391 169 GFQALLQLLKAAPKPDAIFACND-E---MAAGALKAAREAGLTPGDISIIGF 216 (269)
T ss_pred cHHHHHHHHhcCCCCCEEEEcCc-h---HHHHHHHHHHHcCCCCCCCEEEec
Confidence 467788888887 7898888765 3 23334445555554 5777765
No 332
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=25.82 E-value=1.2e+02 Score=30.01 Aligned_cols=109 Identities=24% Similarity=0.323 Sum_probs=49.1
Q ss_pred EEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc------
Q 009559 178 AIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP------ 251 (532)
Q Consensus 178 aIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~------ 251 (532)
+++...|++-|+... +.+.+...|.+.|--+..|+.-.+... +.+..+.|...||-+| |. ..+
T Consensus 74 g~~vvSGlA~GiD~~---ah~~al~~~g~tIaVl~~gl~~~yP~~------n~~l~~~i~~~~glli-Se-~~p~~~~~~ 142 (212)
T PF02481_consen 74 GIVVVSGLAKGIDAA---AHRGALDAGGPTIAVLACGLDNIYPKE------NRELAERILDEGGLLI-SE-YPPGTKPSR 142 (212)
T ss_dssp T-EEEE---TTHHHH---HHHHHTTT---EEEE-SS-TTS-SSGG------GHHHHHHHHHTT-EEE-E--S-TT----T
T ss_pred CEEEEcCCCCCHHHH---HHHHHHHccCCEEEEECCCcccccchh------hHHHHHHHHhcCcEEE-eC-CCCCCCccc
Confidence 555666788898874 334445566545555566776555432 4556777777788777 32 221
Q ss_pred ----cHHHHHHHHHHhCCcEEEEeC---ChhhHHHHHHHHHHHHhcCCCceEeeeecccccCC
Q 009559 252 ----TVSEIVDSMEERGINMLFVLG---GNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDI 307 (532)
Q Consensus 252 ----~~~~ivd~L~~~gId~L~vIG---GdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI 307 (532)
...+++..|- ++++|+- ..||+.+|. ++.+.| -.|..||..++++-
T Consensus 143 ~~f~~RNRiiaaLs----~~~vvvea~~~sGt~~ta~----~A~~~g--r~v~~vp~~~~~~~ 195 (212)
T PF02481_consen 143 WRFPERNRIIAALS----DAVVVVEAGEKSGTLHTAR----FALEQG--RPVFAVPGPIDDPN 195 (212)
T ss_dssp THHHHHHHHHHHH-----S-EEE----TT-THHHHHH----HHHHHT----EEE----TT-GG
T ss_pred ccChHHHHHHHHhC----CeEEEEecCCCChHHHHHH----HHHHcC--CeEEEEeCCCCCcc
Confidence 3456666664 5666664 345555544 444434 46888899998754
No 333
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=25.67 E-value=1.6e+02 Score=29.31 Aligned_cols=47 Identities=23% Similarity=0.388 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCcEEEEeCChhhHHHHH-HHHHHHHhcCCCceEeee
Q 009559 253 VSEIVDSMEERGINMLFVLGGNGTHAGAN-AIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGdGT~~gA~-~L~ee~~kr~~~I~VIGI 299 (532)
+.++++.|.++|+..+++|.|=|....+. ..++++.++..++.|..+
T Consensus 88 l~di~~sl~~~Gf~~ivivngHgGN~~~l~~~~~~l~~~~~~~~v~~~ 135 (237)
T PF02633_consen 88 LRDILRSLARHGFRRIVIVNGHGGNIAALEAAARELRQEYPGVKVFVI 135 (237)
T ss_dssp HHHHHHHHHHHT--EEEEEESSTTHHHHHHHHHHHHHHHGCC-EEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEECCHhHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 46899999999999999999988776444 444666665344555544
No 334
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=25.65 E-value=1.4e+02 Score=28.41 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=31.0
Q ss_pred HHhCCcEEEEeCChhhHHH---HHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHH
Q 009559 261 EERGINMLFVLGGNGTHAG---ANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEA 323 (532)
Q Consensus 261 ~~~gId~L~vIGGdGT~~g---A~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a 323 (532)
...++|+|++.||.++... ..++.+++.++ +++|.|| |.|++......
T Consensus 36 ~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~--~~PvlGI-------------C~G~Q~l~~~~ 86 (178)
T cd01744 36 LKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGK--KIPIFGI-------------CLGHQLLALAL 86 (178)
T ss_pred hhcCCCEEEECCCCCChhHhHHHHHHHHHHHhC--CCCEEEE-------------CHHHHHHHHHc
Confidence 4458999999999876433 23344444443 3678877 88887765433
No 335
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=25.65 E-value=3.5e+02 Score=23.63 Aligned_cols=79 Identities=15% Similarity=0.087 Sum_probs=51.8
Q ss_pred HHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHHHHHhhhh
Q 009559 257 VDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHS 336 (532)
Q Consensus 257 vd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~a~~eA~S 336 (532)
.+.|+++||+.++-+....... .......+....+| ..| +.+.-....++.+.+.|+.+ ..
T Consensus 11 ~~~l~~~~I~~Vin~~~~~~~~--------~~~~~~~~~~~~i~-~~D------~~~~~~~~~~~~~~~~i~~~----~~ 71 (133)
T PF00782_consen 11 IAFLKNLGITHVINLQEECPNP--------YFYKPEGIEYLRIP-IDD------DPEEPILEHLDQAVEFIENA----IS 71 (133)
T ss_dssp HHHHHHTTEEEEEECSSSSSTS--------HHHTTTTSEEEEEE-EES------STTSHGGGGHHHHHHHHHHH----HH
T ss_pred HHHHHHCCCCEEEEccCCCcCc--------hhcccCCCEEEEEE-ecC------CCCcchHHHHHHHHHhhhhh----hc
Confidence 7889999999999999876544 11123468899999 333 22333445566666777655 22
Q ss_pred ccccEEEEEecCCCccHH
Q 009559 337 AYHGIGIVKLMGRSSGYI 354 (532)
Q Consensus 337 ~~~~V~vVevMGR~sG~L 354 (532)
..+.|.|.-.+|.+-.-.
T Consensus 72 ~~~~VlVHC~~G~~RS~~ 89 (133)
T PF00782_consen 72 EGGKVLVHCKAGLSRSGA 89 (133)
T ss_dssp TTSEEEEEESSSSSHHHH
T ss_pred ccceeEEEeCCCcccchH
Confidence 335688888888864433
No 336
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=25.51 E-value=3.7e+02 Score=27.86 Aligned_cols=123 Identities=17% Similarity=0.263 Sum_probs=73.3
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCceEEEEccc------ccccccCCcee---ecCCHHHHhhhhhcCCcceecccCCccH
Q 009559 183 GGLCPGLNDVIRHIVITLEIYGVKNIVGIPFG------YRGFCDKELTE---MPLSRKVVQNIHLSGGSLLGVSRGAPTV 253 (532)
Q Consensus 183 GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~G------y~GL~~~~~~~---i~Lt~~~V~~i~~~GGSiLGTSR~~~~~ 253 (532)
|+..-...++++.+++.+++.|+. -+=+.+| .+-+.+..+.. +.||++.+.. .||-.+ -.|.....
T Consensus 86 g~y~~~~~~av~~a~r~~~~aGa~-aVkiEdg~~~~~~I~al~~agIpV~gHiGL~pq~~~~---~gg~~i-~grt~~~a 160 (264)
T PRK00311 86 GSYQASPEQALRNAGRLMKEAGAH-AVKLEGGEEVAETIKRLVERGIPVMGHLGLTPQSVNV---LGGYKV-QGRDEEAA 160 (264)
T ss_pred CCccCCHHHHHHHHHHHHHHhCCe-EEEEcCcHHHHHHHHHHHHCCCCEeeeecccceeecc---cCCeee-ecCCHHHH
Confidence 444345567788888877768873 4556666 22233333211 2366665433 244333 44654445
Q ss_pred HHH---HHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee---ecc-----cccCCCCC--CccCChh
Q 009559 254 SEI---VDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV---PKT-----IDNDILLM--DKTFGFD 317 (532)
Q Consensus 254 ~~i---vd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI---PKT-----IDNDI~~t--D~SfGFd 317 (532)
+++ ...+++-|.+++|+=|=.. .-+.+|.++ +++++||| |.| +-.|+-+. ++.+-|-
T Consensus 161 ~~~i~ra~a~~eAGA~~i~lE~v~~--~~~~~i~~~-----l~iP~igiGaG~~~dgqvlv~~D~lG~~~~~~pkf~ 230 (264)
T PRK00311 161 EKLLEDAKALEEAGAFALVLECVPA--ELAKEITEA-----LSIPTIGIGAGPDCDGQVLVWHDMLGLFSGFKPKFV 230 (264)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCH--HHHHHHHHh-----CCCCEEEeccCCCCCceeeeHHhhcCCCCCCCCCch
Confidence 555 4667888999999987744 566777664 68999999 554 44566554 3444443
No 337
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=25.49 E-value=80 Score=30.42 Aligned_cols=75 Identities=16% Similarity=0.198 Sum_probs=44.6
Q ss_pred CCHHHHhhhhhcCCcceecccCCc-cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccC
Q 009559 228 LSRKVVQNIHLSGGSLLGVSRGAP-TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDND 306 (532)
Q Consensus 228 Lt~~~V~~i~~~GGSiLGTSR~~~-~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDND 306 (532)
.|...++.+...| ..+-.-|... + ++.+++.+.|+|++-||=|+-..+....+.+++-..+++|.||
T Consensus 11 ft~nl~~~l~~~g-~~v~v~~~~~~~----~~~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGI------- 78 (187)
T PRK08007 11 FTWNLYQYFCELG-ADVLVKRNDALT----LADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGV------- 78 (187)
T ss_pred cHHHHHHHHHHCC-CcEEEEeCCCCC----HHHHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEE-------
Confidence 3555666666653 3333334332 2 2445567899999999999886553333333322235777777
Q ss_pred CCCCCccCChhhHH
Q 009559 307 ILLMDKTFGFDTAV 320 (532)
Q Consensus 307 I~~tD~SfGFdTAv 320 (532)
|+|++.-+
T Consensus 79 ------ClG~Q~la 86 (187)
T PRK08007 79 ------CLGHQAMA 86 (187)
T ss_pred ------CHHHHHHH
Confidence 89987543
No 338
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=25.40 E-value=5.6e+02 Score=23.94 Aligned_cols=94 Identities=21% Similarity=0.261 Sum_probs=59.3
Q ss_pred HHHHHHHHcCCceEEEEcccc-cccccCCceeecCCHHHHhhhhhc-CCcceecccCCccHHHHHHHHHHh-CCcEEEEe
Q 009559 195 HIVITLEIYGVKNIVGIPFGY-RGFCDKELTEMPLSRKVVQNIHLS-GGSLLGVSRGAPTVSEIVDSMEER-GINMLFVL 271 (532)
Q Consensus 195 ~iv~~l~~ygv~~V~Gi~~Gy-~GL~~~~~~~i~Lt~~~V~~i~~~-GGSiLGTSR~~~~~~~ivd~L~~~-gId~L~vI 271 (532)
.+++.|...|++.|||+.++. ..|++ .+.+. +=.++ .+|......-+.+..-+. ++-.+++.
T Consensus 2 ~l~~~L~~~Gi~~vFg~pG~~~~~l~~--------------al~~~~~i~~i-~~rhE~~A~~mA~gyar~t~~gv~~~t 66 (162)
T cd07038 2 YLLERLKQLGVKHVFGVPGDYNLPLLD--------------AIEENPGLRWV-GNCNELNAGYAADGYARVKGLGALVTT 66 (162)
T ss_pred HHHHHHHHcCCCEEEEeCCccHHHHHH--------------HHhhcCCceEE-eeCCHHHHHHHHHHHHHhhCCEEEEEc
Confidence 367888999999999988763 23322 22222 22344 455544433344433322 68888888
Q ss_pred CChhhHHHHHHHHHHHHhcCCCceEeeeecccccC
Q 009559 272 GGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDND 306 (532)
Q Consensus 272 GGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDND 306 (532)
.|=|.......|++... -+++|+.|.....-+
T Consensus 67 ~GpG~~n~~~gl~~A~~---~~~Pvl~i~g~~~~~ 98 (162)
T cd07038 67 YGVGELSALNGIAGAYA---EHVPVVHIVGAPSTK 98 (162)
T ss_pred CCccHHHHHHHHHHHHH---cCCCEEEEecCCCcc
Confidence 89998888888876532 368888887766544
No 339
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=25.29 E-value=5.5e+02 Score=25.59 Aligned_cols=99 Identities=16% Similarity=0.140 Sum_probs=53.6
Q ss_pred chHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceeccc---CCccHHHHHHHHHHh
Q 009559 187 PGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSR---GAPTVSEIVDSMEER 263 (532)
Q Consensus 187 PGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR---~~~~~~~ivd~L~~~ 263 (532)
|.-....+.++..+...|+++|.-+..... +.... .+.+..... |.+.+... +..+...+++.+++.
T Consensus 116 ~~~~~~~~~~~~~l~~~g~~~v~il~~~~~--~~~~~------~~~~~~~~~--~~~~~~~~~~~~~~d~~~~i~~l~~~ 185 (333)
T cd06332 116 WQNDQVHEAMGKYAADKGYKKVVIIAPDYA--AGKDA------VAGFKRTFK--GEVVEEVYTPLGQLDFSAELAQIRAA 185 (333)
T ss_pred CChHHhHHHHHHHHHHhCCceEEEEecCcc--hhHHH------HHHHHHhhc--EEEeeEEecCCCCcchHHHHHHHHhc
Confidence 333455677777777777766644432111 10000 111111111 44444333 234666778889999
Q ss_pred CCcEEEEeCChhhHHHHHHHHHHHHhcCC--CceEee
Q 009559 264 GINMLFVLGGNGTHAGANAIHNECRKRRM--KVAVVG 298 (532)
Q Consensus 264 gId~L~vIGGdGT~~gA~~L~ee~~kr~~--~I~VIG 298 (532)
+.|++|+.+. +.. +..+.+.+++.|+ ++++++
T Consensus 186 ~~d~i~~~~~-~~~--~~~~~~~~~~~g~~~~~~~~~ 219 (333)
T cd06332 186 KPDAVFVFLP-GGM--AVNFVKQYDQAGLKKKIPLYG 219 (333)
T ss_pred CCCEEEEecc-cch--HHHHHHHHHHcCcccCCceec
Confidence 9999888653 222 2345567777787 666664
No 340
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=25.28 E-value=5e+02 Score=28.36 Aligned_cols=152 Identities=18% Similarity=0.222 Sum_probs=76.3
Q ss_pred HHHHHHHHHhCCcEEEEeC-------ChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHH
Q 009559 254 SEIVDSMEERGINMLFVLG-------GNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRA 326 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIG-------GdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~a 326 (532)
+.|.+..++++-+.++|+. ||+-..-+.++.++.. ...+++||.|+- -+..+ .+.-||+.|++...+.
T Consensus 71 ~~i~~~~~~~~p~~I~V~ttc~~eiIGdDi~~v~~~~~~~~p-~~~~~~vi~v~t---~gf~g-~~~~G~~~a~~al~~~ 145 (417)
T cd01966 71 EALDTLAERAKPKVIGLLSTGLTETRGEDIAGALKQFRAEHP-ELADVPVVYVST---PDFEG-SLEDGWAAAVEAIIEA 145 (417)
T ss_pred HHHHHHHHhcCCCEEEEECCCcccccccCHHHHHHHHHhhcc-ccCCCeEEEecC---CCCCC-cHHHHHHHHHHHHHHH
Confidence 4455556678999888876 4443333333322210 013577887753 23333 2455666666555543
Q ss_pred HHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccCceEEEeec---
Q 009559 327 INSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVVCVAE--- 403 (532)
Q Consensus 327 I~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg~~VVVVAE--- 403 (532)
+-.- .+.... ..+ .+=||++...+ .+-++.|++.+++.|.-++++.+
T Consensus 146 l~~~-~~~~~~-----------------------~~~--~VNiig~~~~~----~~D~~eik~lL~~~Gl~v~~l~d~s~ 195 (417)
T cd01966 146 LVEP-GSRTVT-----------------------DPR--QVNLLPGAHLT----PGDVEELKDIIEAFGLEPIILPDLSG 195 (417)
T ss_pred hccc-ccccCC-----------------------CCC--cEEEECCCCCC----HHHHHHHHHHHHHcCCceEEecCccc
Confidence 3210 000000 012 23344544221 13457788888888877777643
Q ss_pred ----------------cccchhhcccccccCCCCccccchHHHHHHHHHHHHHhcCcc
Q 009559 404 ----------------GAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVP 445 (532)
Q Consensus 404 ----------------Gag~~l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~ 445 (532)
|..-+-+ ...-+|.-|..++..+..+++.++++| |++
T Consensus 196 ~~d~~~~~~~~~~~~ggt~leei--~~~~~A~lniv~~~~~~~~a~~Lee~~---GiP 248 (417)
T cd01966 196 SLDGHLADDWSPTTTGGTTLEDI--RQMGRSAATLAIGESMRKAAEALEERT---GVP 248 (417)
T ss_pred ccCCCCCCCccccCCCCCcHHHH--HhhccCeEEEEECHHHHHHHHHHHHHH---CCC
Confidence 1111111 122355566666665667777777765 554
No 341
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=25.16 E-value=1.4e+02 Score=31.54 Aligned_cols=77 Identities=14% Similarity=0.182 Sum_probs=48.2
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCC-C---CCCccCChhhHHHHHHHHH
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDI-L---LMDKTFGFDTAVEEAQRAI 327 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI-~---~tD~SfGFdTAv~~a~~aI 327 (532)
++++.+..|.+ .+|.++||||-.|-.+ .+|++.|++.+.+.-.|-=++=||-+. . -+--|=|-.|=-..+.+.+
T Consensus 199 ~RQ~a~~~La~-~vD~miVVGg~~SsNT-~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV~ 276 (298)
T PRK01045 199 NRQEAVKELAP-QADLVIVVGSKNSSNS-NRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVI 276 (298)
T ss_pred HHHHHHHHHHh-hCCEEEEECCCCCccH-HHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHH
Confidence 45667777754 7999999999999876 678888887765555555555555221 1 1223445555444444444
Q ss_pred HHH
Q 009559 328 NSA 330 (532)
Q Consensus 328 ~~a 330 (532)
..+
T Consensus 277 ~~l 279 (298)
T PRK01045 277 ARL 279 (298)
T ss_pred HHH
Confidence 443
No 342
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=25.05 E-value=85 Score=30.12 Aligned_cols=44 Identities=11% Similarity=0.240 Sum_probs=27.5
Q ss_pred CCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHH
Q 009559 264 GINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAV 320 (532)
Q Consensus 264 gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv 320 (532)
..|+|++.||-|+-.....+.+.+++-..+++|.|| |+|++--+
T Consensus 43 ~~d~iIi~gGp~~~~~~~~~~~~i~~~~~~~PiLGI-------------ClG~Qlla 86 (190)
T PRK06895 43 NFSHILISPGPDVPRAYPQLFAMLERYHQHKSILGV-------------CLGHQTLC 86 (190)
T ss_pred cCCEEEECCCCCChHHhhHHHHHHHHhcCCCCEEEE-------------cHHHHHHH
Confidence 578999999998533333333444322235677777 99998443
No 343
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=24.71 E-value=2.1e+02 Score=29.47 Aligned_cols=82 Identities=16% Similarity=0.279 Sum_probs=49.5
Q ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHH
Q 009559 177 AAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEI 256 (532)
Q Consensus 177 iaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~i 256 (532)
|+|+-+.+.++.- ..+...++.|+..|++ |.- .+..... .+ .+ ++-.....+++
T Consensus 1 I~iiapSs~~~~~-~~~~~~~~~L~~~G~~-v~~------------------~~~~~~~----~~-~~-a~s~~~Ra~dL 54 (282)
T cd07025 1 IGIVAPSSPIDEE-ERLERAIARLESLGLE-VVV------------------GPHVLAR----DG-YL-AGTDEERAADL 54 (282)
T ss_pred CEEEeCCCCCCcH-HHHHHHHHHHHhCCCE-EEe------------------ccchhhh----cC-cc-CCCHHHHHHHH
Confidence 5677666655554 7777778888888873 421 1111110 01 11 11112245778
Q ss_pred HHHHHHhCCcEEEE-eCChhhHHHHHHHH
Q 009559 257 VDSMEERGINMLFV-LGGNGTHAGANAIH 284 (532)
Q Consensus 257 vd~L~~~gId~L~v-IGGdGT~~gA~~L~ 284 (532)
.+.++.-+|++++. .||+|+++-.-.|-
T Consensus 55 ~~a~~d~~i~aI~~~rGG~ga~rlL~~ld 83 (282)
T cd07025 55 NAAFADPEIKAIWCARGGYGANRLLPYLD 83 (282)
T ss_pred HHHhhCCCCCEEEEcCCcCCHHHhhhhCC
Confidence 88898899999875 69999988766654
No 344
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=24.71 E-value=6.4e+02 Score=24.33 Aligned_cols=89 Identities=11% Similarity=0.142 Sum_probs=53.4
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHHc---CCc-eEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLEIY---GVK-NIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP 251 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~~y---gv~-~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~ 251 (532)
|||++...-.-|....+++++-+.+..+ |+. +++ +..+....
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~----------------------------------i~~~~~~~ 46 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKELKKAGLISEFI----------------------------------VTSADGDV 46 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHhhhccCCeeEEE----------------------------------EecCCCCH
Confidence 6788877667788888888888877766 541 111 11122111
Q ss_pred -cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecc
Q 009559 252 -TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKT 302 (532)
Q Consensus 252 -~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKT 302 (532)
...+.++.+...++|++++.+.+... .....+.++++ +|+||.+-..
T Consensus 47 ~~~~~~~~~~~~~~vdgiIi~~~~~~~--~~~~l~~~~~~--~iPvv~~~~~ 94 (272)
T cd06300 47 AQQIADIRNLIAQGVDAIIINPASPTA--LNPVIEEACEA--GIPVVSFDGT 94 (272)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCChhh--hHHHHHHHHHC--CCeEEEEecC
Confidence 23466777788899999999876321 11122334433 5778877443
No 345
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=24.69 E-value=6.2e+02 Score=24.17 Aligned_cols=83 Identities=14% Similarity=0.065 Sum_probs=52.1
Q ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC-ccHHH
Q 009559 177 AAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA-PTVSE 255 (532)
Q Consensus 177 iaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~-~~~~~ 255 (532)
||||..+-.-|-.+.++.++.+.+.+.|+. +.- +.+.... ....+
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~~~~-~~~---------------------------------~~~~~~~~~~~~~ 47 (264)
T cd01574 2 IGVVTTDLALHGPSSTLAAIESAAREAGYA-VTL---------------------------------SMLAEADEEALRA 47 (264)
T ss_pred EEEEeCCCCcccHHHHHHHHHHHHHHCCCe-EEE---------------------------------EeCCCCchHHHHH
Confidence 677777777778888888888888777763 321 0011111 23346
Q ss_pred HHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 256 IVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 256 ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
.++.+.+.++|++++.+-+.... .+.+ +.+. +++||.+
T Consensus 48 ~~~~l~~~~vdgiii~~~~~~~~---~~~~-~~~~--~ipvv~~ 85 (264)
T cd01574 48 AVRRLLAQRVDGVIVNAPLDDAD---AALA-AAPA--DVPVVFV 85 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCCChH---HHHH-HHhc--CCCEEEE
Confidence 78888899999999998765543 2222 2233 4667766
No 346
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=24.60 E-value=6.9e+02 Score=24.68 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=46.5
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHH
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVS 254 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~ 254 (532)
.+||+|...-..+=...++.++.+.+.++|+. ++-. . +......-.
T Consensus 36 ~~ig~v~~~~~~~~~~~~~~gi~~~~~~~g~~-~~~~--------~-------------------------~~~~~~~~~ 81 (309)
T PRK11041 36 RTILVIVPDICDPFFSEIIRGIEVTAAEHGYL-VLIG--------D-------------------------CAHQNQQEK 81 (309)
T ss_pred cEEEEEeCCCcCccHHHHHHHHHHHHHHCCCE-EEEE--------e-------------------------CCCChHHHH
Confidence 47899988777778888888998888888873 4310 0 001111234
Q ss_pred HHHHHHHHhCCcEEEEeCChh
Q 009559 255 EIVDSMEERGINMLFVLGGNG 275 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdG 275 (532)
++++.+...++|++++.+-+.
T Consensus 82 ~~i~~l~~~~vDgiIi~~~~~ 102 (309)
T PRK11041 82 TFVNLIITKQIDGMLLLGSRL 102 (309)
T ss_pred HHHHHHHHcCCCEEEEecCCC
Confidence 677788889999999998653
No 347
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=24.41 E-value=2.6e+02 Score=34.42 Aligned_cols=106 Identities=20% Similarity=0.286 Sum_probs=56.9
Q ss_pred CCcEEEEEeCCCCcchH----HHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceeccc
Q 009559 173 EEVKAAIVTCGGLCPGL----NDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSR 248 (532)
Q Consensus 173 ~~~kiaIvt~GG~cPGl----NavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR 248 (532)
...||.|+=+|..-=|. .-+...+++.|.+.|++ ++.+.+--+.... ..+..+.+..
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~-vI~vn~npetvs~--------~~~~aD~~y~---------- 614 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYE-TIMINNNPETVST--------DYDTADRLYF---------- 614 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHcCCE-EEEEeCCcccccc--------ccccCceEEE----------
Confidence 45677777666432222 12455567778888984 6654433221111 1111111110
Q ss_pred CCccHHHHHHHHHHhCCcEEEEe-CChhhHHHHHHHHHHHHhcCCCceEeee-eccc
Q 009559 249 GAPTVSEIVDSMEERGINMLFVL-GGNGTHAGANAIHNECRKRRMKVAVVGV-PKTI 303 (532)
Q Consensus 249 ~~~~~~~ivd~L~~~gId~L~vI-GGdGT~~gA~~L~ee~~kr~~~I~VIGI-PKTI 303 (532)
...+.+.+.+.+++.+++++++. ||. + +..+++.+++.| +.++|- |++|
T Consensus 615 ep~~~e~vl~I~~~e~~dgVI~~~g~~-~---~~~la~~le~~G--i~ilG~s~e~i 665 (1068)
T PRK12815 615 EPLTLEDVLNVAEAENIKGVIVQFGGQ-T---AINLAKGLEEAG--LTILGTSPDTI 665 (1068)
T ss_pred ccCCHHHHHHHHhhcCCCEEEEecCcH-H---HHHHHHHHHHCC--CeEECCcHHHH
Confidence 12256888999999999999874 554 2 345555555544 556664 3443
No 348
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=24.34 E-value=1.1e+02 Score=31.44 Aligned_cols=56 Identities=23% Similarity=0.386 Sum_probs=38.6
Q ss_pred cccCCc--cHHHHHHHHHHhCCcEEEEeCChhhH----------HHHHHHHHHHHhc--CCCceEeeeec
Q 009559 246 VSRGAP--TVSEIVDSMEERGINMLFVLGGNGTH----------AGANAIHNECRKR--RMKVAVVGVPK 301 (532)
Q Consensus 246 TSR~~~--~~~~ivd~L~~~gId~L~vIGGdGT~----------~gA~~L~ee~~kr--~~~I~VIGIPK 301 (532)
|+|+.. ..+..+..+.+.||+.+++++||-.- ..|..|-+.+++. .+.|-+++.|-
T Consensus 66 t~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Pe 135 (272)
T TIGR00676 66 TCIGATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPE 135 (272)
T ss_pred eecCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 455432 46677888899999999999999762 3366666666553 35566666664
No 349
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=24.28 E-value=5.8e+02 Score=25.82 Aligned_cols=104 Identities=13% Similarity=0.075 Sum_probs=56.4
Q ss_pred cchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC-----ccHHHHHHHH
Q 009559 186 CPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA-----PTVSEIVDSM 260 (532)
Q Consensus 186 cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~-----~~~~~ivd~L 260 (532)
+|.-.....+++..+.++|+++|.-+..-.. + -..+-....+.+...|.++..+.... .+...+++.|
T Consensus 141 ~p~~~~~~~a~~~~~~~~~~~~v~~l~~~~~------~-g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~d~~~~l~~l 213 (348)
T cd06350 141 VPSDTSQALAIVALLKHFGWTWVGLVYSDDD------Y-GRSGLSDLEEELEKNGICIAFVEAIPPSSTEEDIKRILKKL 213 (348)
T ss_pred cCCcHHHHHHHHHHHHHCCCeEEEEEEecch------h-HHHHHHHHHHHHHHCCCcEEEEEEccCCCcHHHHHHHHHHH
Confidence 3444555556666556677765543322111 0 00111222334445566665544322 3677889999
Q ss_pred HHhCCcEEEEeCChhhHHHHHHHHHHHHhcCC-CceEeee
Q 009559 261 EERGINMLFVLGGNGTHAGANAIHNECRKRRM-KVAVVGV 299 (532)
Q Consensus 261 ~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~-~I~VIGI 299 (532)
++.+-+.+++.+... .+..+.+.+++.|+ +..+++.
T Consensus 214 ~~~~~~vvv~~~~~~---~~~~~~~~a~~~g~~~~~~i~~ 250 (348)
T cd06350 214 KSSTARVIVVFGDED---DALRLFCEAYKLGMTGKYWIIS 250 (348)
T ss_pred HhCCCcEEEEEeCcH---HHHHHHHHHHHhCCCCeEEEEE
Confidence 999988887776543 34455566777776 3344444
No 350
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=24.28 E-value=69 Score=32.81 Aligned_cols=51 Identities=18% Similarity=0.348 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCC
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDI 307 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI 307 (532)
...++++.++..+.+.++-+||-=....+...+.+ .+++.+.||-+..||=
T Consensus 63 ~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~-----~~~p~isVPTa~S~DG 113 (250)
T PF13685_consen 63 EVEKLVEALRPKDADLIIGVGGGTIIDIAKYAAFE-----LGIPFISVPTAASHDG 113 (250)
T ss_dssp HHHHHHTTS--TT--EEEEEESHHHHHHHHHHHHH-----HT--EEEEES--SSGG
T ss_pred HHHHHHHHhcccCCCEEEEeCCcHHHHHHHHHHHh-----cCCCEEEecccccccc
Confidence 34567777777899999999997666666655543 3689999999999884
No 351
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=24.27 E-value=1.4e+02 Score=29.27 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=41.4
Q ss_pred EEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCC--ChhHHHHHHHHHHhccCceEEEeeccc
Q 009559 344 VKLMGRSSGYIAMHASLASGQIDICLIPESPFNLH--GPNGVLRHLKYLIETKGSAVVCVAEGA 405 (532)
Q Consensus 344 VevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~le--g~~~ll~~lk~~~~~kg~~VVVVAEGa 405 (532)
-++-|...=-+++..+|+.. ++++++=|---.+| ....+.+.|++..++++.++|+++--.
T Consensus 128 ~~LS~G~~qrv~laral~~~-p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~ 190 (232)
T PRK10771 128 GQLSGGQRQRVALARCLVRE-QPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSL 190 (232)
T ss_pred ccCCHHHHHHHHHHHHHhcC-CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 36666667778899999986 99999855433343 334566667665555577888887543
No 352
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=24.27 E-value=2.8e+02 Score=34.16 Aligned_cols=105 Identities=14% Similarity=0.139 Sum_probs=59.8
Q ss_pred CcEEEEEeCCCCcch----HHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccC
Q 009559 174 EVKAAIVTCGGLCPG----LNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRG 249 (532)
Q Consensus 174 ~~kiaIvt~GG~cPG----lNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~ 249 (532)
-.||.|+-+|+..-| .-..=.++.+.|.+.|+ +|+.+..--.... .+....+.....
T Consensus 7 ~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~G~-~vi~v~~~p~~~~--------~~~~~aD~~y~~---------- 67 (1066)
T PRK05294 7 IKKILIIGSGPIVIGQACEFDYSGTQACKALREEGY-RVVLVNSNPATIM--------TDPEMADATYIE---------- 67 (1066)
T ss_pred CCEEEEECCchhhhcccccccchHHHHHHHHHHcCC-EEEEEcCCccccc--------CCcccCCEEEEC----------
Confidence 368999988875443 11122346667778899 5777643211110 011111111100
Q ss_pred CccHHHHHHHHHHhCCcEEEE-eCChhhHHHHHHHHH--HHHhcCCCceEeee
Q 009559 250 APTVSEIVDSMEERGINMLFV-LGGNGTHAGANAIHN--ECRKRRMKVAVVGV 299 (532)
Q Consensus 250 ~~~~~~ivd~L~~~gId~L~v-IGGdGT~~gA~~L~e--e~~kr~~~I~VIGI 299 (532)
+.+.+.+.+.++++++|+++. +||+-.+..+..+++ .+++ +++.+.|.
T Consensus 68 p~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le~--~Gv~~~g~ 118 (1066)
T PRK05294 68 PITPEFVEKIIEKERPDAILPTMGGQTALNLAVELAESGVLEK--YGVELIGA 118 (1066)
T ss_pred CCCHHHHHHHHHHHCcCEEEECCCCchhhhhhHHHHhhCHHHH--CCCEEECC
Confidence 113567788889999999997 588877777776664 2343 34667764
No 353
>PLN02735 carbamoyl-phosphate synthase
Probab=24.16 E-value=2.9e+02 Score=34.26 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=60.8
Q ss_pred CcEEEEEeCCCCcch----HHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccC
Q 009559 174 EVKAAIVTCGGLCPG----LNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRG 249 (532)
Q Consensus 174 ~~kiaIvt~GG~cPG----lNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~ 249 (532)
-.||.|+-+|...=| .-..=.++.+.|.+.|+ +|+.+..--. .+..+++..+.. .+ .
T Consensus 23 ~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~-~Vi~vd~np~--------t~~~~~~~aD~~------yi----~ 83 (1102)
T PLN02735 23 LKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGY-EVVLINSNPA--------TIMTDPETADRT------YI----A 83 (1102)
T ss_pred CCEEEEECCCccccccceeecchHHHHHHHHHHcCC-EEEEEeCCcc--------cccCChhhCcEE------Ee----C
Confidence 368999999875333 11112246677788899 5776542111 111111111111 11 0
Q ss_pred CccHHHHHHHHHHhCCcEEEE-eCChhhHHHHHHHHH--HHHhcCCCceEeeee
Q 009559 250 APTVSEIVDSMEERGINMLFV-LGGNGTHAGANAIHN--ECRKRRMKVAVVGVP 300 (532)
Q Consensus 250 ~~~~~~ivd~L~~~gId~L~v-IGGdGT~~gA~~L~e--e~~kr~~~I~VIGIP 300 (532)
+.+.+.+.+.+++.++|+++. +||+-.+..+..|++ .+++ ++|+++|.+
T Consensus 84 p~~~e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~--~GI~~~G~~ 135 (1102)
T PLN02735 84 PMTPELVEQVIAKERPDALLPTMGGQTALNLAVALAESGILEK--YGVELIGAK 135 (1102)
T ss_pred CCCHHHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCHHHH--CCCEEECCC
Confidence 113455667789999999995 699988888887764 2333 457777754
No 354
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=23.97 E-value=3.8e+02 Score=31.73 Aligned_cols=128 Identities=19% Similarity=0.294 Sum_probs=72.2
Q ss_pred hhhhhcCCCcccccCCC------CcEE-EEEeCCCCcchH------------HHHHHHHHHHHHHcCCceEEEEc----c
Q 009559 157 QWVHRAGPREEIYFKPE------EVKA-AIVTCGGLCPGL------------NDVIRHIVITLEIYGVKNIVGIP----F 213 (532)
Q Consensus 157 ~~~~~agpr~~i~f~p~------~~ki-aIvt~GG~cPGl------------NavIr~iv~~l~~ygv~~V~Gi~----~ 213 (532)
..+|+++-=..+.||-. +.++ -+..-+|+-.-+ +.+=++|++++...|...+-.++ .
T Consensus 397 ~~LE~l~~v~tvvFDKTGTLT~G~p~v~~v~~~~~~e~~~L~laAalE~~S~HPiA~AIv~~a~~~~~~~~~~~~~i~G~ 476 (713)
T COG2217 397 EALERLAKVDTVVFDKTGTLTEGKPEVTDVVALDGDEDELLALAAALEQHSEHPLAKAIVKAAAERGLPDVEDFEEIPGR 476 (713)
T ss_pred HHHHhhccCCEEEEeCCCCCcCCceEEEEEecCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCccceeeeccC
Confidence 46777777777888643 2333 444444421222 22345677766554421222222 6
Q ss_pred cccccccCCceee-----------cCC--HHHHhhhhhcCCcceecccCC-------------ccHHHHHHHHHHhCCcE
Q 009559 214 GYRGFCDKELTEM-----------PLS--RKVVQNIHLSGGSLLGVSRGA-------------PTVSEIVDSMEERGINM 267 (532)
Q Consensus 214 Gy~GL~~~~~~~i-----------~Lt--~~~V~~i~~~GGSiLGTSR~~-------------~~~~~ivd~L~~~gId~ 267 (532)
|.+|.+++....+ .++ .+..+.+...|-|.+--+..+ ++..+.++.|+++||.
T Consensus 477 Gv~~~v~g~~v~vG~~~~~~~~~~~~~~~~~~~~~~~~~G~t~v~va~dg~~~g~i~~~D~~R~~a~~aI~~L~~~Gi~- 555 (713)
T COG2217 477 GVEAEVDGERVLVGNARLLGEEGIDLPLLSERIEALESEGKTVVFVAVDGKLVGVIALADELRPDAKEAIAALKALGIK- 555 (713)
T ss_pred cEEEEECCEEEEEcCHHHHhhcCCCccchhhhHHHHHhcCCeEEEEEECCEEEEEEEEeCCCChhHHHHHHHHHHCCCe-
Confidence 7888776532111 011 223444555666655444433 3568899999999999
Q ss_pred EEEeCChhhHHHHHHHHHH
Q 009559 268 LFVLGGNGTHAGANAIHNE 286 (532)
Q Consensus 268 L~vIGGdGT~~gA~~L~ee 286 (532)
++++=||- .+.|.+++++
T Consensus 556 ~~mLTGDn-~~~A~~iA~~ 573 (713)
T COG2217 556 VVMLTGDN-RRTAEAIAKE 573 (713)
T ss_pred EEEEcCCC-HHHHHHHHHH
Confidence 88888886 4566777765
No 355
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=23.97 E-value=8.3e+02 Score=25.40 Aligned_cols=99 Identities=9% Similarity=0.087 Sum_probs=57.4
Q ss_pred CcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCC----cceeccc---CCccHHHHH
Q 009559 185 LCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGG----SLLGVSR---GAPTVSEIV 257 (532)
Q Consensus 185 ~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GG----SiLGTSR---~~~~~~~iv 257 (532)
.+|.-+...++++..+..+++++|.-+..- +++- ..+-....+.+...|. .+..+.. +..+...++
T Consensus 134 ~~psd~~~~~a~~~~l~~~~w~~vaii~~~------~~~g-~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~d~~~~l 206 (377)
T cd06379 134 TVPPYSHQADVWLEMLRSFKWNKVILLVSD------DHEG-RAAQKRFETLLEEREIEFKIKVEKVVEFEPGEKNVTSLL 206 (377)
T ss_pred ecCCHHHHHHHHHHHHHHcCCeEEEEEEEc------Ccch-hHHHHHHHHHHHhcCCccceeeeEEEecCCchhhHHHHH
Confidence 556667667777777778899776443211 0100 0011112223334555 4443322 334678888
Q ss_pred HHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCC
Q 009559 258 DSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMK 293 (532)
Q Consensus 258 d~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~ 293 (532)
..|++.+-+.+++.|... .+..|.+.+++.|+.
T Consensus 207 ~~ik~~~~~vIvl~~~~~---~~~~l~~qa~~~g~~ 239 (377)
T cd06379 207 QEAKELTSRVILLSASED---DAAVIYRNAGMLNMT 239 (377)
T ss_pred HHHhhcCCeEEEEEcCHH---HHHHHHHHHHHcCCC
Confidence 999999999998766544 456666777777653
No 356
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=23.92 E-value=6.7e+02 Score=27.42 Aligned_cols=102 Identities=17% Similarity=0.264 Sum_probs=65.1
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHH
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVS 254 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~ 254 (532)
-.++|.=+||. |||+ +..+..+|-.+|++ +.++++..+.-...|-|-.=.++...++.
T Consensus 187 ~tvaV~GlGgV--Glaa-----I~gA~~agA~~IiA---------------vD~~~~Kl~~A~~fGAT~~vn~~~~~~vv 244 (366)
T COG1062 187 DTVAVFGLGGV--GLAA-----IQGAKAAGAGRIIA---------------VDINPEKLELAKKFGATHFVNPKEVDDVV 244 (366)
T ss_pred CeEEEEeccHh--HHHH-----HHHHHHcCCceEEE---------------EeCCHHHHHHHHhcCCceeecchhhhhHH
Confidence 35667767764 6664 33445567666765 44677777777777776554444333566
Q ss_pred HHHHHHHHhCCcEEE-EeCChhhHHHHHHHHHHHHhcCCCceEeeeecc
Q 009559 255 EIVDSMEERGINMLF-VLGGNGTHAGANAIHNECRKRRMKVAVVGVPKT 302 (532)
Q Consensus 255 ~ivd~L~~~gId~L~-vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKT 302 (532)
+.+..+-..|.|+.| ++|.-.+|+.|.... .++-..-+||+|..
T Consensus 245 ~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~----~~~G~~v~iGv~~~ 289 (366)
T COG1062 245 EAIVELTDGGADYAFECVGNVEVMRQALEAT----HRGGTSVIIGVAGA 289 (366)
T ss_pred HHHHHhcCCCCCEEEEccCCHHHHHHHHHHH----hcCCeEEEEecCCC
Confidence 667777777999877 456667777765443 34556788898864
No 357
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=23.89 E-value=1.3e+02 Score=30.32 Aligned_cols=61 Identities=21% Similarity=0.229 Sum_probs=41.2
Q ss_pred EEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCC--ChhHHHHHHHHHHhccCceEEEeeccc
Q 009559 344 VKLMGRSSGYIAMHASLASGQIDICLIPESPFNLH--GPNGVLRHLKYLIETKGSAVVCVAEGA 405 (532)
Q Consensus 344 VevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~le--g~~~ll~~lk~~~~~kg~~VVVVAEGa 405 (532)
-++-|...=-+++..+|+.. ++++|+=|---.+| ....+++.|++..+..|..||+++.-.
T Consensus 149 ~~LSgGe~qrv~laral~~~-p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~ 211 (265)
T TIGR02769 149 RQLSGGQLQRINIARALAVK-PKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL 211 (265)
T ss_pred hhCCHHHHHHHHHHHHHhcC-CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 35666666668888999986 99998855432343 334566777766555578888887654
No 358
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.84 E-value=4.6e+02 Score=28.51 Aligned_cols=89 Identities=17% Similarity=0.307 Sum_probs=59.5
Q ss_pred HHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCcc-HHHHHHHHHHhCCcEEE-EeC
Q 009559 195 HIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPT-VSEIVDSMEERGINMLF-VLG 272 (532)
Q Consensus 195 ~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~-~~~ivd~L~~~gId~L~-vIG 272 (532)
++++.+...|-.+|+| +.++++..+.-...|-|-.=......+ +++.+.-+..-|+|+=| ++|
T Consensus 207 av~~Gaka~GAsrIIg---------------vDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~G 271 (375)
T KOG0022|consen 207 AVAMGAKAAGASRIIG---------------VDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFECIG 271 (375)
T ss_pred HHHHhHHhcCcccEEE---------------EecCHHHHHHHHhcCcceecChhhccccHHHHHHHHhcCCceEEEEecC
Confidence 4555556677667776 456788888777777775434343223 55666666678999988 889
Q ss_pred ChhhHHHHHHHHHHHHhcCC-CceEeeeecc
Q 009559 273 GNGTHAGANAIHNECRKRRM-KVAVVGVPKT 302 (532)
Q Consensus 273 GdGT~~gA~~L~ee~~kr~~-~I~VIGIPKT 302 (532)
.-.+|+.|..-. +.|. +..||||++.
T Consensus 272 ~~~~m~~al~s~----h~GwG~sv~iGv~~~ 298 (375)
T KOG0022|consen 272 NVSTMRAALESC----HKGWGKSVVIGVAAA 298 (375)
T ss_pred CHHHHHHHHHHh----hcCCCeEEEEEecCC
Confidence 999998876432 3453 4677888765
No 359
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=23.67 E-value=1.1e+02 Score=31.94 Aligned_cols=42 Identities=36% Similarity=0.510 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 253 VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
..++++.|++++|++|++-.--- ..++=+..++.++++||||
T Consensus 56 ~~~i~~~l~~~~ik~lVIACNTA-----Sa~al~~LR~~~~iPVvGv 97 (269)
T COG0796 56 TLEIVDFLLERGIKALVIACNTA-----SAVALEDLREKFDIPVVGV 97 (269)
T ss_pred HHHHHHHHHHcCCCEEEEecchH-----HHHHHHHHHHhCCCCEEEe
Confidence 45799999999999999976433 3333222334578999998
No 360
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=23.67 E-value=90 Score=32.62 Aligned_cols=50 Identities=10% Similarity=0.278 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccc
Q 009559 253 VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTID 304 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTID 304 (532)
.++.+..|.+ .+|.++||||-.|-.+ .+|++-|++.+.+.-.|-=|.=|+
T Consensus 199 RQ~a~~~La~-~vD~miVIGg~~SsNT-~kL~eia~~~~~~t~~Ie~~~el~ 248 (281)
T PF02401_consen 199 RQEAARELAK-EVDAMIVIGGKNSSNT-RKLAEIAKEHGKPTYHIETADELD 248 (281)
T ss_dssp HHHHHHHHHC-CSSEEEEES-TT-HHH-HHHHHHHHHCTTCEEEESSGGG--
T ss_pred HHHHHHHHHh-hCCEEEEecCCCCccH-HHHHHHHHHhCCCEEEeCCccccC
Confidence 4566777754 7999999999999544 789999988765544444444343
No 361
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=23.52 E-value=1.1e+03 Score=26.56 Aligned_cols=138 Identities=19% Similarity=0.294 Sum_probs=78.3
Q ss_pred HHHHHHHHHHcCCceEEEEcccc-cccccCCceeecCCHHHHhhhhhcCC-cceecccCCccHHHHHHHHHH--hCCcEE
Q 009559 193 IRHIVITLEIYGVKNIVGIPFGY-RGFCDKELTEMPLSRKVVQNIHLSGG-SLLGVSRGAPTVSEIVDSMEE--RGINML 268 (532)
Q Consensus 193 Ir~iv~~l~~ygv~~V~Gi~~Gy-~GL~~~~~~~i~Lt~~~V~~i~~~GG-SiLGTSR~~~~~~~ivd~L~~--~gId~L 268 (532)
-..+++.|..+|+++|||+.++. ..|++ .++...| .++ .+|......-+.+..-+ .++-.+
T Consensus 7 a~~l~~~L~~~GV~~vFg~pG~~~~~l~~--------------al~~~~~i~~v-~~~hE~~A~~mAdgyar~tg~~gv~ 71 (574)
T PRK06882 7 AEMVVQSLRDEGVEYVFGYPGGSVLDIYD--------------AIHTLGGIEHV-LVRHEQAAVHMADGYARSTGKVGCV 71 (574)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcchHHHHH--------------HHhhcCCCeEE-EeccHHHHHHHHHHHHHhhCCCeEE
Confidence 45678888999999999988763 22322 2222112 333 34544443344444443 358888
Q ss_pred EEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCC--ccCCh-------------hhHHHHHHHHHHHHHHh
Q 009559 269 FVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMD--KTFGF-------------DTAVEEAQRAINSAYIE 333 (532)
Q Consensus 269 ~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD--~SfGF-------------dTAv~~a~~aI~~a~~e 333 (532)
++-.|=|.......|++... -+++|+.|-....-+..+.+ +++-. -+-.+.+.+.++.+...
T Consensus 72 ~~t~GpG~~N~l~~i~~A~~---~~~Pvlvi~G~~~~~~~~~~~~q~~d~~~l~~~vtk~s~~v~~~~~~~~~l~~A~~~ 148 (574)
T PRK06882 72 LVTSGPGATNAITGIATAYT---DSVPLVILSGQVPSNLIGTDAFQECDMLGISRPVVKHSFIVKNAEDIPSTIKKAFYI 148 (574)
T ss_pred EECCCccHHHHHHHHHHHhh---cCCCEEEEecCCCccccCCCcccccchhhhhhcccceEEEeCCHHHHHHHHHHHHHH
Confidence 88899999888888876443 35778877655443332111 00000 01124455667777666
Q ss_pred hhhccccEEEEEecC
Q 009559 334 AHSAYHGIGIVKLMG 348 (532)
Q Consensus 334 A~S~~~~V~vVevMG 348 (532)
|.+.+.|-..+++--
T Consensus 149 A~~~~~GPV~l~iP~ 163 (574)
T PRK06882 149 ASTGRPGPVVIDIPK 163 (574)
T ss_pred HhcCCCCCEEEecCH
Confidence 766555555566543
No 362
>PRK05660 HemN family oxidoreductase; Provisional
Probab=23.29 E-value=97 Score=33.25 Aligned_cols=63 Identities=17% Similarity=0.308 Sum_probs=45.0
Q ss_pred hCCcEEEEeCChhhHH---HHHHHHHHHHh-----cCCCceEeeeecccccCC-------CCCCccCChhhHHHHHHH
Q 009559 263 RGINMLFVLGGNGTHA---GANAIHNECRK-----RRMKVAVVGVPKTIDNDI-------LLMDKTFGFDTAVEEAQR 325 (532)
Q Consensus 263 ~gId~L~vIGGdGT~~---gA~~L~ee~~k-----r~~~I~VIGIPKTIDNDI-------~~tD~SfGFdTAv~~a~~ 325 (532)
.+++.+++-||.=|+- .-.+|.+.+++ .+..+.+-+=|.|++.+. ...--|+|.+|.-....+
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~ 134 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLK 134 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHH
Confidence 5799999999999984 33444455554 344688888899998775 345578999888765443
No 363
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=23.20 E-value=6.5e+02 Score=23.91 Aligned_cols=84 Identities=12% Similarity=0.108 Sum_probs=52.6
Q ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHH
Q 009559 177 AAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEI 256 (532)
Q Consensus 177 iaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~i 256 (532)
|||+...-..|-.+.+++++.+.+.++|+. +.-+.. ........++
T Consensus 2 igvv~~~~~~~~~~~~~~~i~~~~~~~g~~-~~~~~~---------------------------------~~~~~~~~~~ 47 (266)
T cd06282 2 VGVVLPSLANPVFAECVQGIQEEARAAGYS-LLLATT---------------------------------DYDAEREADA 47 (266)
T ss_pred eEEEeCCCCcchHHHHHHHHHHHHHHCCCE-EEEeeC---------------------------------CCCHHHHHHH
Confidence 677776666789999999999998888873 431110 0001123356
Q ss_pred HHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 257 VDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 257 vd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
++.|...++|++++..++.... ...+.+++++ +++|.+
T Consensus 48 ~~~l~~~~vdgiii~~~~~~~~---~~~~~~~~~~--ipvV~~ 85 (266)
T cd06282 48 VETLLRQRVDGLILTVADAATS---PALDLLDAER--VPYVLA 85 (266)
T ss_pred HHHHHhcCCCEEEEecCCCCch---HHHHHHhhCC--CCEEEE
Confidence 7778888999999987764321 1234454444 555544
No 364
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=23.06 E-value=1e+03 Score=26.70 Aligned_cols=140 Identities=16% Similarity=0.155 Sum_probs=79.3
Q ss_pred HHHHHHHHHHcCCceEEEEccccc-ccccCCceeecCCHHHHhhhhhcCC-cceecccCCccHHHHHHHHHHh--CCcEE
Q 009559 193 IRHIVITLEIYGVKNIVGIPFGYR-GFCDKELTEMPLSRKVVQNIHLSGG-SLLGVSRGAPTVSEIVDSMEER--GINML 268 (532)
Q Consensus 193 Ir~iv~~l~~ygv~~V~Gi~~Gy~-GL~~~~~~~i~Lt~~~V~~i~~~GG-SiLGTSR~~~~~~~ivd~L~~~--gId~L 268 (532)
-..+++.|..+|++.|||+.++.. .|++. +..-...++ .++ .+|......-+.+..-+. ..-.+
T Consensus 5 ~~~l~~~L~~~GV~~vFg~pG~~~~~l~da-----------l~~~~~~~~i~~i-~~rhE~~A~~~Adgyar~tg~~gv~ 72 (572)
T PRK06456 5 ARILVDSLKREGVKVIFGIPGLSNMQIYDA-----------FVEDLANGELRHV-LMRHEQAAAHAADGYARASGVPGVC 72 (572)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcchHHHHHH-----------HHhhccCCCCeEE-EeCcHHHHHHHHHHHHHhhCCCEEE
Confidence 456788889999999999887643 22221 000001222 233 345444433444444433 45566
Q ss_pred EEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCc--cCChh-------------hHHHHHHHHHHHHHHh
Q 009559 269 FVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDK--TFGFD-------------TAVEEAQRAINSAYIE 333 (532)
Q Consensus 269 ~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~--SfGFd-------------TAv~~a~~aI~~a~~e 333 (532)
++.-|=|.......|++... -+++|+.|-.....+..+.+. .+-.. +-.+.+.+.++.+...
T Consensus 73 ~~t~GpG~~N~l~gi~~A~~---~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~i~~~~tk~~~~v~~~~~~~~~l~~A~~~ 149 (572)
T PRK06456 73 TATSGPGTTNLVTGLITAYW---DSSPVIAITGQVPRSVMGKMAFQEADAMGVFENVTKYVIGIKRIDEIPQWIKNAFYI 149 (572)
T ss_pred EeCCCCCHHHHHHHHHHHHh---hCCCEEEEecCCCccccCCCCccccchhhhhhccceeEEEeCCHHHHHHHHHHHHHH
Confidence 77789999988888886543 257888887766655432221 00000 1234566677777777
Q ss_pred hhhccccEEEEEec
Q 009559 334 AHSAYHGIGIVKLM 347 (532)
Q Consensus 334 A~S~~~~V~vVevM 347 (532)
|.+-+.|-..+++-
T Consensus 150 A~~~~~GPV~l~iP 163 (572)
T PRK06456 150 ATTGRPGPVVIDIP 163 (572)
T ss_pred HhcCCCCcEEEecC
Confidence 77655565566664
No 365
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=22.92 E-value=9.4e+02 Score=25.63 Aligned_cols=151 Identities=19% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCcEEEEeC-------ChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHH
Q 009559 253 VSEIVDSMEERGINMLFVLG-------GNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQR 325 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIG-------GdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~ 325 (532)
.+.|.+.+++++-+.++|+. ||+--.-+..+.++ .+++||.|+- +++.+-.+.-||+.|++...+
T Consensus 76 ~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~-----~~~~vi~v~t---~gf~g~~~~~G~~~a~~al~~ 147 (406)
T cd01967 76 KKAIKEAYERFPPKAIFVYSTCPTGLIGDDIEAVAKEASKE-----LGIPVIPVNC---EGFRGVSQSLGHHIANDAILD 147 (406)
T ss_pred HHHHHHHHHhCCCCEEEEECCCchhhhccCHHHHHHHHHHh-----hCCCEEEEeC---CCeeCCcccHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccCceEEEeeccc
Q 009559 326 AINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVVCVAEGA 405 (532)
Q Consensus 326 aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg~~VVVVAEGa 405 (532)
.+..-.......++. +-||++..+. +-++.|++.+++-|.-++.+--|
T Consensus 148 ~l~~~~~~~~~~~~~--------------------------VNiig~~~~~-----~d~~el~~lL~~~Gi~~~~~~~~- 195 (406)
T cd01967 148 HLVGTKEPEEKTPYD--------------------------VNIIGEYNIG-----GDAWVIKPLLEELGIRVNATFTG- 195 (406)
T ss_pred HhcCCCCcCCCCCCe--------------------------EEEEeccccc-----hhHHHHHHHHHHcCCEEEEEeCC-
Q ss_pred cchhhcccccccCCCCccccc-hHHHHHHHHHHHHHhcCcce
Q 009559 406 GQSLIKKTNATDASGNIVLGD-VGVLIQQETKKYFKEIGVPI 446 (532)
Q Consensus 406 g~~l~~~~~~~DasGn~~l~d-Ig~~L~~~I~~~f~~~g~~~ 446 (532)
+..+-+-....+|.-|..+.. .+..+.+.++++| |+++
T Consensus 196 ~~~~~~i~~~~~A~~niv~~~~~~~~~a~~L~~r~---GiP~ 234 (406)
T cd01967 196 DGTVDELRRAHRAKLNLVHCSRSMNYLAREMEERY---GIPY 234 (406)
T ss_pred CCCHHHHhhCccCCEEEEEChHHHHHHHHHHHHhh---CCCE
No 366
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=22.87 E-value=3.2e+02 Score=24.13 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=27.3
Q ss_pred HHhCCcEEEEeCChh-hHHHHHHHHHHHHhcCC-Cce
Q 009559 261 EERGINMLFVLGGNG-THAGANAIHNECRKRRM-KVA 295 (532)
Q Consensus 261 ~~~gId~L~vIGGdG-T~~gA~~L~ee~~kr~~-~I~ 295 (532)
..++++-++.||-+| |-.-...|.+.++++.+ +|.
T Consensus 12 ~ah~l~p~v~IGK~Glt~~vi~ei~~aL~~hELIKVk 48 (95)
T TIGR00253 12 KAHHLKPVVLVGKNGLTEGVIKEIEQALEHRELIKVK 48 (95)
T ss_pred HhCCCCCeEEECCCCCCHHHHHHHHHHHHhCCcEEEE
Confidence 458999999999999 55666778788888876 444
No 367
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=22.82 E-value=1.3e+02 Score=29.03 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=30.2
Q ss_pred HHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHH
Q 009559 260 MEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAV 320 (532)
Q Consensus 260 L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv 320 (532)
++..+.+.+++-||.++-.......+.+++...+++|.|| |+|++.-.
T Consensus 39 ~~~~~~~~iilsgGp~~~~~~~~~~~~i~~~~~~~PiLGI-------------ClG~Qlia 86 (193)
T PRK08857 39 IEALNPTHLVISPGPCTPNEAGISLQAIEHFAGKLPILGV-------------CLGHQAIA 86 (193)
T ss_pred HhhCCCCEEEEeCCCCChHHCcchHHHHHHhcCCCCEEEE-------------cHHHHHHH
Confidence 4566789999999998765322122222222235777777 99987643
No 368
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=22.82 E-value=9.9e+02 Score=26.25 Aligned_cols=155 Identities=16% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCC-cEEEEeCChhhHHHHHHHHHHHHh--cCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHH
Q 009559 253 VSEIVDSMEERGI-NMLFVLGGNGTHAGANAIHNECRK--RRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINS 329 (532)
Q Consensus 253 ~~~ivd~L~~~gI-d~L~vIGGdGT~~gA~~L~ee~~k--r~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~ 329 (532)
.+.|.+..++++- +.++|++.--+--....+...+++ +..+++||.|+ -++..+-.+.-||+.|++.+.+.+-.
T Consensus 106 ~~aI~~~~~~~~p~~~I~V~~tC~~~liGdDi~~v~~~~~~~~~~pvi~v~---t~gf~g~~~~~G~~~a~~al~~~l~~ 182 (443)
T TIGR01862 106 KKLIHEAFTEFPLIKAISVYATCPTGLIGDDIEAVAKEVSKEIGKDVVAVN---CPGFAGVSQSKGHHIANIAVINDKVG 182 (443)
T ss_pred HHHHHHHHHhCCccceEEEECCChHHHhccCHHHHHHHHHHhcCCCEEEEe---cCCccCCccchHHHHHHHHHHHHHhC
Q ss_pred HHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccCceEE-Eeeccccch
Q 009559 330 AYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVV-CVAEGAGQS 408 (532)
Q Consensus 330 a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg~~VV-VVAEGag~~ 408 (532)
-........+. +-||++..+. +-++.|++.+++.|.-++ +...|..-+
T Consensus 183 ~~~~~~~~~~~--------------------------VNiig~~~~~-----~d~~el~~lL~~~Gl~v~~~~~~~~t~e 231 (443)
T TIGR01862 183 TREKEITTEYD--------------------------VNIIGEYNIG-----GDAWVMRIYLEEMGIQVVATFTGDGTYD 231 (443)
T ss_pred CCCcccCCCCe--------------------------EEEEccCcCc-----ccHHHHHHHHHHcCCeEEEEECCCCCHH
Q ss_pred hhcccccccCCCCcccc-chHHHHHHHHHHHHHhcCcce
Q 009559 409 LIKKTNATDASGNIVLG-DVGVLIQQETKKYFKEIGVPI 446 (532)
Q Consensus 409 l~~~~~~~DasGn~~l~-dIg~~L~~~I~~~f~~~g~~~ 446 (532)
-+.+... |.-|..+. ..+..+++.++++| |++.
T Consensus 232 ei~~~~~--A~lniv~~~~~~~~~A~~L~er~---GiP~ 265 (443)
T TIGR01862 232 EIRLMHK--AKLNLVHCARSANYIANELEERY---GIPW 265 (443)
T ss_pred HHHhccc--CCEEEEEChHHHHHHHHHHHHHh---CCCe
No 369
>PRK12342 hypothetical protein; Provisional
Probab=22.79 E-value=3.1e+02 Score=28.20 Aligned_cols=69 Identities=16% Similarity=0.214 Sum_probs=48.7
Q ss_pred cCCcceecccCCccH--HHHHHHHHHhCCcEEEEe-----CChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCC
Q 009559 239 SGGSLLGVSRGAPTV--SEIVDSMEERGINMLFVL-----GGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDIL 308 (532)
Q Consensus 239 ~GGSiLGTSR~~~~~--~~ivd~L~~~gId~L~vI-----GGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~ 308 (532)
.||++.--|=|++.. +++.+..-.+|.|-.+.| +|.+|+.+|..|++.+++.++.+-+.| =.|+|.|-.
T Consensus 50 ~g~~Vtvls~Gp~~a~~~~l~r~alamGaD~avli~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G-~~s~D~~tg 125 (254)
T PRK12342 50 DGDEIAALTVGGSLLQNSKVRKDVLSRGPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFG-EGSGDLYAQ 125 (254)
T ss_pred cCCEEEEEEeCCChHhHHHHHHHHHHcCCCEEEEEecCccCCCCHHHHHHHHHHHHHHhCCCEEEEc-CCcccCCCC
Confidence 356555455555542 334455567899999888 467999999999999998788876666 466666654
No 370
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=22.69 E-value=9.2e+02 Score=25.42 Aligned_cols=157 Identities=13% Similarity=0.088 Sum_probs=78.6
Q ss_pred EEeCCCCcchHH--HHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCccee-cccCC-----
Q 009559 179 IVTCGGLCPGLN--DVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLG-VSRGA----- 250 (532)
Q Consensus 179 Ivt~GG~cPGlN--avIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLG-TSR~~----- 250 (532)
|+.+||+ |=+| .++..++..+..-.+-+.++|.-=.-.++.. -+|++.++.+...|=.... ++=..
T Consensus 146 VvltGGE-PL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~-----rit~el~~~L~~~~~~~~~~~h~dh~~Ei~ 219 (321)
T TIGR03821 146 VILSGGD-PLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPD-----RITSGLCDLLANSRLQTVLVVHINHANEID 219 (321)
T ss_pred EEEeCcc-cccCCchHHHHHHHHHHhCCCCcEEEEecCcceeeHH-----HhhHHHHHHHHhcCCcEEEEeeCCChHhCc
Confidence 6677777 4444 3477777766543321334442100011111 2466666655555433332 22211
Q ss_pred ccHHHHHHHHHHhCCcEE---EEeCC-hhhHHHHHHHHHHHHhcCCC-ceEe-eeecccccCCCCCCccCChhhHHHHHH
Q 009559 251 PTVSEIVDSMEERGINML---FVLGG-NGTHAGANAIHNECRKRRMK-VAVV-GVPKTIDNDILLMDKTFGFDTAVEEAQ 324 (532)
Q Consensus 251 ~~~~~ivd~L~~~gId~L---~vIGG-dGT~~gA~~L~ee~~kr~~~-I~VI-GIPKTIDNDI~~tD~SfGFdTAv~~a~ 324 (532)
+...+.++.|++.||... +++=| |++......|.+.+.+.|.. ..+. .+|.. +.. -|.+-.+.+.
T Consensus 220 d~~~~ai~~L~~~Gi~v~~qtvllkgiNDn~~~l~~L~~~l~~~gv~pyyl~~~~p~g------g~~---~f~v~~~~~~ 290 (321)
T TIGR03821 220 AEVADALAKLRNAGITLLNQSVLLRGVNDNADTLAALSERLFDAGVLPYYLHLLDKVQ------GAA---HFDVDDERAR 290 (321)
T ss_pred HHHHHHHHHHHHcCCEEEecceeeCCCCCCHHHHHHHHHHHHHcCCeeCcccccCCCC------Ccc---cccCCHHHHH
Confidence 234567777887777432 23434 66666666666665544431 1110 11111 111 2778888888
Q ss_pred HHHHHHHHhhhhccccEEEEEecCCC
Q 009559 325 RAINSAYIEAHSAYHGIGIVKLMGRS 350 (532)
Q Consensus 325 ~aI~~a~~eA~S~~~~V~vVevMGR~ 350 (532)
+.++.++.-..+.----+++++-|..
T Consensus 291 ~i~~~l~~~~sG~~~P~~v~d~pg~~ 316 (321)
T TIGR03821 291 ALMAELLARLPGYLVPRLVREIPGEP 316 (321)
T ss_pred HHHHHHHHhCCCCccceeEEEcCCCC
Confidence 88887766554422224677877754
No 371
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=22.69 E-value=5.5e+02 Score=26.06 Aligned_cols=103 Identities=10% Similarity=-0.010 Sum_probs=54.1
Q ss_pred cchHHHHHHHHHHHHHHc--CCceEEEEcccccccccCCceeecCCHHHHhhhhhc--CCcceecccC---CccHHHHHH
Q 009559 186 CPGLNDVIRHIVITLEIY--GVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLS--GGSLLGVSRG---APTVSEIVD 258 (532)
Q Consensus 186 cPGlNavIr~iv~~l~~y--gv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~--GGSiLGTSR~---~~~~~~ivd 258 (532)
+|.-......++..+... ++++|..+...+. +-.. .-....+.+... |.+++...+. ..+...++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~g~~-----~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~~v~ 189 (346)
T cd06330 117 RNSTIMDAVAGALYAAKLDKKAKTWATINPDYA--YGQD-----AWADFKAALKRLRPDVEVVSEQWPKLGAPDYGSEIT 189 (346)
T ss_pred cCChHHHHHHHHHHHHHhCcCccEEEEECCchH--HHHH-----HHHHHHHHHHHhCCCCeecccccCCCCCcccHHHHH
Confidence 344556666677766544 4666544322111 0000 001111222333 3455554442 246788899
Q ss_pred HHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCC--CceEee
Q 009559 259 SMEERGINMLFVLGGNGTHAGANAIHNECRKRRM--KVAVVG 298 (532)
Q Consensus 259 ~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~--~I~VIG 298 (532)
.|++.+.+.+++++..+. +..+.+++++.++ ++.+++
T Consensus 190 ~i~~~~~d~ii~~~~~~~---~~~~~~~~~~~g~~~~~~~~~ 228 (346)
T cd06330 190 ALLAAKPDAIFSSLWGGD---LVTFVRQANARGLFDGTTVVL 228 (346)
T ss_pred HHHhcCCCEEEEeccccc---HHHHHHHHHhcCcccCceEEe
Confidence 999999999998864322 2344456666666 445553
No 372
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=22.63 E-value=3.1e+02 Score=28.57 Aligned_cols=115 Identities=10% Similarity=-0.003 Sum_probs=63.6
Q ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCcee---------ecCCHHHHhhhhhcCCcc
Q 009559 173 EEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTE---------MPLSRKVVQNIHLSGGSL 243 (532)
Q Consensus 173 ~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~---------i~Lt~~~V~~i~~~GGSi 243 (532)
+.+||.|+|++- =-|=+.+..++.+.+.+.|+. +.-+.+.+....+ .+.. +...+... ++...++..
T Consensus 3 ~~~rili~t~~~-G~GH~~~a~al~~~l~~~g~~-~~~~~d~~~~~~~-~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~ 78 (380)
T PRK13609 3 KNPKVLILTAHY-GNGHVQVAKTLEQTFRQKGIK-DVIVCDLFGESHP-VITEITKYLYLKSYTIGKELY-RLFYYGVEK 78 (380)
T ss_pred CCCeEEEEEcCC-CchHHHHHHHHHHHHHhcCCC-cEEEEEhHHhcch-HHHHHHHHHHHHHHHHhHHHH-HHHHhccCc
Confidence 457999999775 448899999999999888874 4445555543311 0000 00111111 222222222
Q ss_pred eecccCC-----ccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEe
Q 009559 244 LGVSRGA-----PTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVV 297 (532)
Q Consensus 244 LGTSR~~-----~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VI 297 (532)
+...+.. ....++.+.|++++.|.++.-++.-++.. ..++++.+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~~------~~~~~~~~ip~~ 131 (380)
T PRK13609 79 IYDKKIFSWYANFGRKRLKLLLQAEKPDIVINTFPIIAVPE------LKKQTGISIPTY 131 (380)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhCcCEEEEcChHHHHHH------HHHhcCCCCCeE
Confidence 2111100 01367889999999999997665543321 123356677776
No 373
>PTZ00063 histone deacetylase; Provisional
Probab=22.54 E-value=4.2e+02 Score=29.58 Aligned_cols=100 Identities=19% Similarity=0.285 Sum_probs=64.9
Q ss_pred CcchHHH-----HHHHHHHHH-HHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHHHH
Q 009559 185 LCPGLND-----VIRHIVITL-EIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEIVD 258 (532)
Q Consensus 185 ~cPGlNa-----vIr~iv~~l-~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ivd 258 (532)
+-+|+.+ +.+.++..+ ..+.- +++-+.-|+.++..+.+-.+.||.+. ..++++
T Consensus 225 L~~G~~D~~Y~~~f~~ii~~~i~~f~P-d~IvvqaG~D~~~~DpLg~l~Lt~~g--------------------~~~~~~ 283 (436)
T PTZ00063 225 LNDGIDDDSFVDLFKPVISKCVEVYRP-GAIVLQCGADSLTGDRLGRFNLTIKG--------------------HAACVE 283 (436)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCC-CEEEEECCccccCCCCCCCcccCHHH--------------------HHHHHH
Confidence 3455544 555555443 45665 58889999999998765445555442 335677
Q ss_pred HHHHhCCcEEEEeCChhhHHHH-HHHHHHHHhcCCCceEeeeecccccCCCCCC
Q 009559 259 SMEERGINMLFVLGGNGTHAGA-NAIHNECRKRRMKVAVVGVPKTIDNDILLMD 311 (532)
Q Consensus 259 ~L~~~gId~L~vIGGdGT~~gA-~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD 311 (532)
.++++++-.|++.||-=+.+.. ...+.+. -.+++.|..|+|+||..+
T Consensus 284 ~~~~~~~pil~l~gGGY~~~~lar~w~~~t------~~~~~~~~~~~~~iP~~~ 331 (436)
T PTZ00063 284 FVRSLNIPLLVLGGGGYTIRNVARCWAYET------GVILNKHDEMSDQISLND 331 (436)
T ss_pred HHHhcCCCEEEEeCccCCchHHHHHHHHHH------HHHhCCcccCCccCCCCc
Confidence 7888999999888776565443 3333221 125577778999999665
No 374
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=22.46 E-value=3.5e+02 Score=25.22 Aligned_cols=42 Identities=12% Similarity=0.283 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChh-hHHHHHHHHHHHHhcCCC
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNG-THAGANAIHNECRKRRMK 293 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdG-T~~gA~~L~ee~~kr~~~ 293 (532)
..+++++..++++.+.+-+-.=.+ ++.....+.++++++++.
T Consensus 40 ~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~ 82 (134)
T TIGR01501 40 PQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLE 82 (134)
T ss_pred CHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCC
Confidence 478999999999999987765333 344566777888888874
No 375
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=22.45 E-value=5.2e+02 Score=26.54 Aligned_cols=61 Identities=16% Similarity=0.231 Sum_probs=38.7
Q ss_pred hhhcCCcceecccC---CccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEee
Q 009559 236 IHLSGGSLLGVSRG---APTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVG 298 (532)
Q Consensus 236 i~~~GGSiLGTSR~---~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIG 298 (532)
+...|+.+.++... ..|....+..|++.+.+++|+.+-..- .+..+.+.+++.|++..+++
T Consensus 162 l~~~G~~vv~~~~~~~~~~D~s~~i~~i~~~~~d~v~~~~~~~~--~~~~~~~~~~~~g~~~~~~~ 225 (347)
T cd06336 162 WEAAGGKVVSEEPYDPGTTDFSPIVTKLLAEKPDVIFLGGPSPA--PAALVIKQARELGFKGGFLS 225 (347)
T ss_pred HHHcCCEEeeecccCCCCcchHHHHHHHHhcCCCEEEEcCCCch--HHHHHHHHHHHcCCCccEEe
Confidence 44556666555443 347788889999999998876654330 23445567777777655543
No 376
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=22.34 E-value=2.4e+02 Score=28.71 Aligned_cols=45 Identities=16% Similarity=0.282 Sum_probs=26.7
Q ss_pred CCHHHHhhhhhcCCcceecccCCccHHHHHHHHHHhCCcEEEEeCCh
Q 009559 228 LSRKVVQNIHLSGGSLLGVSRGAPTVSEIVDSMEERGINMLFVLGGN 274 (532)
Q Consensus 228 Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ivd~L~~~gId~L~vIGGd 274 (532)
+....++.+...||..+--.+...+.+...+.++ .+|+|++.||.
T Consensus 27 ~~~~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~--~~DGlil~GG~ 71 (254)
T PRK11366 27 LQEKYLNAIIHAGGLPIALPHALAEPSLLEQLLP--KLDGIYLPGSP 71 (254)
T ss_pred HHHHHHHHHHHCCCEEEEecCCCCCHHHHHHHHH--hCCEEEeCCCC
Confidence 3455677777778865544443222233333343 39999999984
No 377
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=22.22 E-value=3.1e+02 Score=30.41 Aligned_cols=59 Identities=17% Similarity=0.308 Sum_probs=37.0
Q ss_pred CccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHh--cCCCceEe------eeecccccCCCCCCccC
Q 009559 250 APTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRK--RRMKVAVV------GVPKTIDNDILLMDKTF 314 (532)
Q Consensus 250 ~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~k--r~~~I~VI------GIPKTIDNDI~~tD~Sf 314 (532)
+.+++.+++.|++. +..+++||-+.. ++.+++.+ .+..+..+ |+|.|-.|-...+..+.
T Consensus 362 ~~d~~~l~~~l~~~-~~~vi~iG~~~~-----~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (488)
T PRK03369 362 GASVDALVAEMASR-LVGAVLIGRDRA-----VVAEALSRHAPDVPVVQVVTGEDAGMPATPEVPVACVTDVA 428 (488)
T ss_pred CCCHHHHHHHHhhh-eeEEEEEcCCHH-----HHHHHHHhcCCCCCEEEeccccccccccccccccccccccc
Confidence 45788899988765 889999988763 34444433 22333333 56777777665554443
No 378
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=22.16 E-value=3.3e+02 Score=24.22 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=34.0
Q ss_pred HHHHhhhhhcCCcceecccCCc----cHHHHHHHHHHhCC-cEEEEeCChhhH
Q 009559 230 RKVVQNIHLSGGSLLGVSRGAP----TVSEIVDSMEERGI-NMLFVLGGNGTH 277 (532)
Q Consensus 230 ~~~V~~i~~~GGSiLGTSR~~~----~~~~ivd~L~~~gI-d~L~vIGGdGT~ 277 (532)
++.++.+...+-.+++-|-... ...++++.|++.+. +..+++||...-
T Consensus 40 e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~ 92 (122)
T cd02071 40 EEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPP 92 (122)
T ss_pred HHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCH
Confidence 3556677777777777665332 45778888998877 778889987653
No 379
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=22.11 E-value=1.5e+02 Score=28.85 Aligned_cols=58 Identities=19% Similarity=0.250 Sum_probs=37.3
Q ss_pred EecCCCccHHHHHHhHhcCCccEEEcCCCCCCCC--ChhHHHHHHHHHHhccCceEEEeec
Q 009559 345 KLMGRSSGYIAMHASLASGQIDICLIPESPFNLH--GPNGVLRHLKYLIETKGSAVVCVAE 403 (532)
Q Consensus 345 evMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~le--g~~~ll~~lk~~~~~kg~~VVVVAE 403 (532)
++-|..-=-+++..+|+.. ++++++=|---.+| ..+.+.+.|++..++++.+||+++-
T Consensus 146 ~LS~Ge~qrl~la~al~~~-p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH 205 (228)
T PRK10584 146 QLSGGEQQRVALARAFNGR-PDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTH 205 (228)
T ss_pred hCCHHHHHHHHHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 4544445558888999976 89988866433344 3345556666554555778888774
No 380
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.96 E-value=1.2e+03 Score=26.38 Aligned_cols=134 Identities=19% Similarity=0.261 Sum_probs=78.1
Q ss_pred HHHHHHHHHcCCceEEEEccc-ccccccCCceeecCCHHHHhhhhhc-CCcceecccCCccHHHHHHHHHH--hCCcEEE
Q 009559 194 RHIVITLEIYGVKNIVGIPFG-YRGFCDKELTEMPLSRKVVQNIHLS-GGSLLGVSRGAPTVSEIVDSMEE--RGINMLF 269 (532)
Q Consensus 194 r~iv~~l~~ygv~~V~Gi~~G-y~GL~~~~~~~i~Lt~~~V~~i~~~-GGSiLGTSR~~~~~~~ivd~L~~--~gId~L~ 269 (532)
..+++.|..+|+++|||+.++ ..+|++. +... +=.++ .+|......-+.+..-+ .++-.++
T Consensus 8 ~~l~~~L~~~Gv~~vFgipG~~~~~l~~a--------------l~~~~~i~~i-~~rhE~~A~~mAdgyar~tg~~gv~~ 72 (574)
T PRK06466 8 EMLVRALRDEGVEYIYGYPGGAVLHIYDA--------------LFKQDKVEHI-LVRHEQAATHMADGYARATGKTGVVL 72 (574)
T ss_pred HHHHHHHHHcCCCEEEECCCcchhHHHHH--------------hhccCCceEE-EeCcHHHHHHHHHHHHHHhCCCEEEE
Confidence 467888889999999999887 3344432 1111 11233 23443333334433332 3478888
Q ss_pred EeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCC------C----------ccCChhhHHHHHHHHHHHHHHh
Q 009559 270 VLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLM------D----------KTFGFDTAVEEAQRAINSAYIE 333 (532)
Q Consensus 270 vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~t------D----------~SfGFdTAv~~a~~aI~~a~~e 333 (532)
+.-|=|.......|++... -+++|+.|-.....+.... | +|. .-+..+.+.+.++.+...
T Consensus 73 vt~GPG~~N~l~gl~~A~~---~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~itk~s~-~v~~~~~~~~~~~rA~~~ 148 (574)
T PRK06466 73 VTSGPGATNAITGIATAYM---DSIPMVVLSGQVPSTLIGEDAFQETDMVGISRPIVKHSF-MVKHASEIPEIIKKAFYI 148 (574)
T ss_pred ECCCccHHHHHHHHHHHHh---cCCCEEEEecCCCccccCCCcccccchhhhhhccceeEE-EcCCHHHHHHHHHHHHHH
Confidence 8889999988888876543 2567777766554443221 1 111 111245566777777777
Q ss_pred hhhccccEEEEEe
Q 009559 334 AHSAYHGIGIVKL 346 (532)
Q Consensus 334 A~S~~~~V~vVev 346 (532)
|.+.+.|-..+++
T Consensus 149 A~~~~~GPV~l~i 161 (574)
T PRK06466 149 AQSGRPGPVVVDI 161 (574)
T ss_pred HhcCCCCcEEEEc
Confidence 7776556555665
No 381
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=21.90 E-value=3.2e+02 Score=25.29 Aligned_cols=103 Identities=15% Similarity=0.228 Sum_probs=60.9
Q ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCH-HHHhhhhhcCCcceeccc---
Q 009559 173 EEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSR-KVVQNIHLSGGSLLGVSR--- 248 (532)
Q Consensus 173 ~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~-~~V~~i~~~GGSiLGTSR--- 248 (532)
+..++-+.+.||+.=.+.--+-+ ..++..|++ |+ +-+ ...+. +.++......-.+++.|=
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~--~~lr~~G~e-Vi---------~LG----~~vp~e~i~~~a~~~~~d~V~lS~~~~ 65 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILD--RALTEAGFE-VI---------NLG----VMTSQEEFIDAAIETDADAILVSSLYG 65 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHH--HHHHHCCCE-EE---------ECC----CCCCHHHHHHHHHHcCCCEEEEcCccc
Confidence 45678888888887666554333 234678884 43 111 11233 345555555555666543
Q ss_pred -CCccHHHHHHHHHHhCC-cEEEEeCChhhHHH--HHHHHHHHHhcC
Q 009559 249 -GAPTVSEIVDSMEERGI-NMLFVLGGNGTHAG--ANAIHNECRKRR 291 (532)
Q Consensus 249 -~~~~~~~ivd~L~~~gI-d~L~vIGGdGT~~g--A~~L~ee~~kr~ 291 (532)
......++++.|++.+. +..+++||.-+... ...+.+++++.|
T Consensus 66 ~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G 112 (137)
T PRK02261 66 HGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMG 112 (137)
T ss_pred cCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcC
Confidence 22356888999999988 77889999754321 334445555544
No 382
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=21.80 E-value=5e+02 Score=28.50 Aligned_cols=57 Identities=21% Similarity=0.310 Sum_probs=32.5
Q ss_pred ChhhHHHHHHHHHHHHHHhhh-hccccEEEEEecCCCc-----cHHHHHHhHhcCCccEEEcCCC
Q 009559 315 GFDTAVEEAQRAINSAYIEAH-SAYHGIGIVKLMGRSS-----GYIAMHASLASGQIDICLIPES 373 (532)
Q Consensus 315 GFdTAv~~a~~aI~~a~~eA~-S~~~~V~vVevMGR~s-----G~LA~~aaLAsg~ad~~LIPE~ 373 (532)
|+.-+++.+.+.+.+....-. ..-.+ |.+-.+++. |.=....||..|.++-.||.|.
T Consensus 251 Gl~Evl~~~~~~L~~~k~~~E~~lle~--f~~el~~d~g~avyG~~eV~~ALe~GAVetLLV~d~ 313 (403)
T TIGR03676 251 GLRELVEKAEDLLKDLELMKEKKLMER--FFKELVKDGGLAAYGEEEVRKALEMGAVDTLLISED 313 (403)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCCcEEEcHHHHHHHHHhCCCcEEEEEcc
Confidence 555666665555555432111 11111 123334433 6667888999999999999875
No 383
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=21.64 E-value=6.1e+02 Score=23.02 Aligned_cols=96 Identities=15% Similarity=0.050 Sum_probs=57.0
Q ss_pred CccHHHHHHHHHHhCCcEEEEeCChhhHHH---HHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHH
Q 009559 250 APTVSEIVDSMEERGINMLFVLGGNGTHAG---ANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRA 326 (532)
Q Consensus 250 ~~~~~~ivd~L~~~gId~L~vIGGdGT~~g---A~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~a 326 (532)
++-.++-++.|+++||..+|-+=.++-... ...+.+.+.. .++..+.||-.-+ .+ -+..++...++
T Consensus 13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~--~gl~y~~iPv~~~--------~~-~~~~v~~f~~~ 81 (135)
T TIGR01244 13 PQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEA--AGVTYHHQPVTAG--------DI-TPDDVETFRAA 81 (135)
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHH--CCCeEEEeecCCC--------CC-CHHHHHHHHHH
Confidence 333344456789999999999988752111 1112222222 3578999996521 11 22344444444
Q ss_pred HHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcC
Q 009559 327 INSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASG 363 (532)
Q Consensus 327 I~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg 363 (532)
++ + ....|.+.--.|+.+|++++..-.+.|
T Consensus 82 ~~----~---~~~pvL~HC~sG~Rt~~l~al~~~~~g 111 (135)
T TIGR01244 82 IG----A---AEGPVLAYCRSGTRSSLLWGFRQAAEG 111 (135)
T ss_pred HH----h---CCCCEEEEcCCChHHHHHHHHHHHHcC
Confidence 43 2 245699999999999999876555444
No 384
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=21.63 E-value=4.4e+02 Score=27.30 Aligned_cols=96 Identities=19% Similarity=0.288 Sum_probs=53.7
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccH
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTV 253 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~ 253 (532)
..||||||| -...|+.++++.+-+. .+.+ +++-+ +-.|+ | ..-.
T Consensus 14 p~~I~vITs-~~gAa~~D~~~~~~~r--~~~~-~~~~~------------------p~~vQ-----G---------~~A~ 57 (319)
T PF02601_consen 14 PKRIAVITS-PTGAAIQDFLRTLKRR--NPIV-EIILY------------------PASVQ-----G---------EGAA 57 (319)
T ss_pred CCEEEEEeC-CchHHHHHHHHHHHHh--CCCc-EEEEE------------------ecccc-----c---------cchH
Confidence 468999998 5667788877766552 1223 33211 11111 1 1122
Q ss_pred HHHHHHHHHh-------CCcEEEEeCChhhHHHHHHHHHHHHhc---CCCceEe-eeeccccc
Q 009559 254 SEIVDSMEER-------GINMLFVLGGNGTHAGANAIHNECRKR---RMKVAVV-GVPKTIDN 305 (532)
Q Consensus 254 ~~ivd~L~~~-------gId~L~vIGGdGT~~gA~~L~ee~~kr---~~~I~VI-GIPKTIDN 305 (532)
.+|++.|++. .+|.++++=|-||...-..+.+|.-.| ..+++|| ||=..+|.
T Consensus 58 ~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~PvisaIGHe~D~ 120 (319)
T PF02601_consen 58 ASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVISAIGHETDF 120 (319)
T ss_pred HHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEEecCCCCCc
Confidence 3444444433 399999999999987766555443222 3566665 45555444
No 385
>COG0224 AtpG F0F1-type ATP synthase, gamma subunit [Energy production and conversion]
Probab=21.62 E-value=3.2e+02 Score=28.79 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=13.4
Q ss_pred HHHHHHHHHhCCcEEEEe
Q 009559 254 SEIVDSMEERGINMLFVL 271 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vI 271 (532)
+++++...+..+|-++++
T Consensus 151 ~~~~~~~~~g~~d~v~l~ 168 (287)
T COG0224 151 DKILDAFLEGEIDELYLV 168 (287)
T ss_pred HHHHHHHhCCCCceEEEE
Confidence 566777777788887776
No 386
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.61 E-value=8.2e+02 Score=24.47 Aligned_cols=85 Identities=13% Similarity=0.084 Sum_probs=48.9
Q ss_pred EEEEeCCC-CcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecc-cCCccHH
Q 009559 177 AAIVTCGG-LCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVS-RGAPTVS 254 (532)
Q Consensus 177 iaIvt~GG-~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTS-R~~~~~~ 254 (532)
|||+..+- .-|-...+++++-..+..+|+. ++- .++ .......
T Consensus 2 Igvi~~~~~~~~~~~~~~~gi~~~~~~~g~~-v~~----------------------------------~~~~~~~~~~~ 46 (305)
T cd06324 2 VVFLNPGKSDEPFWNSVARFMQAAADDLGIE-LEV----------------------------------LYAERDRFLML 46 (305)
T ss_pred eEEecCCCCCCcHHHHHHHHHHHHHHhcCCe-EEE----------------------------------EeCCCCHHHHH
Confidence 56666554 4566677777777777666663 321 111 1111234
Q ss_pred HHHHHHHHh--CCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeec
Q 009559 255 EIVDSMEER--GINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPK 301 (532)
Q Consensus 255 ~ivd~L~~~--gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPK 301 (532)
++++.+... ++|++++.+.+... ..+.+++++++ ++||.+=.
T Consensus 47 ~~i~~~~~~~~~vdgiIi~~~~~~~---~~~~~~~~~~g--iPvV~~~~ 90 (305)
T cd06324 47 QQARTILQRPDKPDALIFTNEKSVA---PELLRLAEGAG--VKLFLVNS 90 (305)
T ss_pred HHHHHHHHhccCCCEEEEcCCccch---HHHHHHHHhCC--CeEEEEec
Confidence 678888888 99999998765322 22234555544 56665533
No 387
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=21.58 E-value=1.4e+02 Score=28.42 Aligned_cols=42 Identities=26% Similarity=0.195 Sum_probs=27.8
Q ss_pred EEEeCCCC-cchHHHHHHHHHHHHHHcCCceEEEEccccccccc
Q 009559 178 AIVTCGGL-CPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCD 220 (532)
Q Consensus 178 aIvt~GG~-cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~ 220 (532)
|||.+||+ .|---.....+++.+...+.. |+||..|.+-+..
T Consensus 42 giil~GG~~~~~~~~~~~~~~~~~~~~~~P-vlGIC~G~Q~l~~ 84 (178)
T cd01744 42 GIFLSNGPGDPALLDEAIKTVRKLLGKKIP-IFGICLGHQLLAL 84 (178)
T ss_pred EEEECCCCCChhHhHHHHHHHHHHHhCCCC-EEEECHHHHHHHH
Confidence 78888886 332223444566666666664 9999999987654
No 388
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.33 E-value=1.2e+03 Score=26.28 Aligned_cols=186 Identities=20% Similarity=0.301 Sum_probs=102.0
Q ss_pred HHHHHHHHHcCCceEEEEccccc-ccccCCceeecCCHHHHhhhhhc-CCcceecccCCccHHHHHHHHHH--hCCcEEE
Q 009559 194 RHIVITLEIYGVKNIVGIPFGYR-GFCDKELTEMPLSRKVVQNIHLS-GGSLLGVSRGAPTVSEIVDSMEE--RGINMLF 269 (532)
Q Consensus 194 r~iv~~l~~ygv~~V~Gi~~Gy~-GL~~~~~~~i~Lt~~~V~~i~~~-GGSiLGTSR~~~~~~~ivd~L~~--~gId~L~ 269 (532)
..+++.|..+|+++|||+.++.. .|++ .+... |=.++ .+|......-+.+..-+ -++-.++
T Consensus 8 ~~l~~~L~~~Gv~~vFgvpG~~~~~l~d--------------~l~~~~~i~~i-~~rhE~~A~~mAdgYar~tg~~gv~~ 72 (574)
T PRK07979 8 EMVVRSLIDQGVKQVFGYPGGAVLDIYD--------------ALHTVGGIDHV-LVRHEQAAVHMADGLARATGEVGVVL 72 (574)
T ss_pred HHHHHHHHHcCCCEEEEccCcchHHHHH--------------HHHhcCCceEE-EeCcHHHHHHHHHHHHHHhCCceEEE
Confidence 45788889999999999988632 3332 22221 22344 34544443344444443 3588888
Q ss_pred EeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCc--cCCh-------------hhHHHHHHHHHHHHHHhh
Q 009559 270 VLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDK--TFGF-------------DTAVEEAQRAINSAYIEA 334 (532)
Q Consensus 270 vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~--SfGF-------------dTAv~~a~~aI~~a~~eA 334 (532)
+--|=|.......|++... -+++|+.|-........+.+. .+.. -+..+.+.+.++.+...|
T Consensus 73 ~t~GPG~~n~l~gi~~A~~---~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A 149 (574)
T PRK07979 73 VTSGPGATNAITGIATAYM---DSIPLVVLSGQVATSLIGYDAFQECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLA 149 (574)
T ss_pred ECCCccHhhhHHHHHHHhh---cCCCEEEEECCCChhccCCCCCceecHHHHhhcccceEEEeCCHHHHHHHHHHHHHHH
Confidence 8889999888888876433 257777776665544322210 0000 012445667777777777
Q ss_pred hhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCC----CCC-C-CChhHHHHHHHHHHhccCceEEEeecccc
Q 009559 335 HSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPES----PFN-L-HGPNGVLRHLKYLIETKGSAVVCVAEGAG 406 (532)
Q Consensus 335 ~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~----pf~-l-eg~~~ll~~lk~~~~~kg~~VVVVAEGag 406 (532)
.+.+.|-..+++- ++ +.. .... .+. -.|+. ++. . ......++.+-+++..-.+-+|++.-|+.
T Consensus 150 ~~~~~GPv~l~iP-~D---v~~-~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~A~rPvi~~G~g~~ 218 (574)
T PRK07979 150 ASGRPGPVVVDLP-KD---ILN-PANK---LPY-VWPESVSMRSYNPTTQGHKGQIKRALQTLVAAKKPVVYVGGGAI 218 (574)
T ss_pred ccCCCCcEEEEcC-hh---hhh-hhhc---ccc-ccCcccccccCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCcc
Confidence 7765565566653 11 110 0000 000 01110 011 0 01134566677777777788888888874
No 389
>PRK00865 glutamate racemase; Provisional
Probab=21.28 E-value=8.7e+02 Score=24.61 Aligned_cols=88 Identities=22% Similarity=0.268 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhCCcEEEEeCChhhHH-HHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHHHH
Q 009559 253 VSEIVDSMEERGINMLFVLGGNGTHA-GANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAY 331 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGdGT~~-gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~a~ 331 (532)
..++++.|++.|+++ ++|.=|.... +...|.+ .++++|||+ ..|++.+++
T Consensus 56 ~~~~~~~L~~~g~d~-iVIaCNTa~~~~l~~lr~-----~~~iPvigi-----------------~~a~~~a~~------ 106 (261)
T PRK00865 56 TLEIVEFLLEYGVKM-LVIACNTASAVALPDLRE-----RYDIPVVGI-----------------VPAIKPAAA------ 106 (261)
T ss_pred HHHHHHHHHhCCCCE-EEEeCchHHHHHHHHHHH-----hCCCCEEee-----------------HHHHHHHHH------
Confidence 357889999999996 5555565443 3344443 257888875 223333221
Q ss_pred HhhhhccccEEEEEecC-CCccHHHHHHhHhcCCccEEEcCC
Q 009559 332 IEAHSAYHGIGIVKLMG-RSSGYIAMHASLASGQIDICLIPE 372 (532)
Q Consensus 332 ~eA~S~~~~V~vVevMG-R~sG~LA~~aaLAsg~ad~~LIPE 372 (532)
. +..++|+|+=+.| ..+++..-...-......+..+|.
T Consensus 107 --~-~~~~~igVLaT~~Ti~s~~y~~~i~~~~~~~~v~~~~~ 145 (261)
T PRK00865 107 --L-TRNGRIGVLATPGTVKSAAYRDLIARFAPDCQVESLAC 145 (261)
T ss_pred --h-cCCCeEEEEECHHHhhchHHHHHHHHhCCCCEEEEecC
Confidence 1 2235799998888 366665433332222245544664
No 390
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=21.26 E-value=2.2e+02 Score=30.93 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=47.4
Q ss_pred eecccC-CccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecc
Q 009559 244 LGVSRG-APTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKT 302 (532)
Q Consensus 244 LGTSR~-~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKT 302 (532)
.|..+. ..+++.++..+.++||..++=-||-.....|.++.+.++++|++++|..|-.-
T Consensus 50 ~gY~~~~~~~L~~~L~~~~~~gIkvI~NaGg~np~~~a~~v~eia~e~Gl~lkvA~V~gD 109 (362)
T PF07287_consen 50 KGYAPDFVRDLRPLLPAAAEKGIKVITNAGGLNPAGCADIVREIARELGLSLKVAVVYGD 109 (362)
T ss_pred CCchHHHHHHHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHHHHhcCCCeeEEEEECc
Confidence 444432 23678899999999999999999988888888888889999998888877543
No 391
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=21.22 E-value=1e+03 Score=26.29 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=32.4
Q ss_pred HHHHHHHHhccCceEEEeec-------------------cccchhhcccccccCCCCccccchHHHHHHHHHHHHHhcCc
Q 009559 384 LRHLKYLIETKGSAVVCVAE-------------------GAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGV 444 (532)
Q Consensus 384 l~~lk~~~~~kg~~VVVVAE-------------------Gag~~l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~ 444 (532)
++.|++.+++-|.-++++.+ |..-+-+ .....|.-|..++..+..+++.++++| |+
T Consensus 184 ~~elk~lL~~~Gl~v~~lpd~s~~ld~~l~~~~~~~~~gg~t~eei--~~~~~A~lniv~~~~~~~~a~~Lee~~---Gi 258 (455)
T PRK14476 184 IEELREIIEAFGLEPIILPDLSGSLDGHLPDDWTPTTLGGTTLEEI--RELGRSAATIAIGESMRKAAEALEART---GV 258 (455)
T ss_pred HHHHHHHHHHcCCceEEecCccccccCCCCCcccccCCCCCCHHHH--HhhccCcEEEEecHHHHHHHHHHHHHh---CC
Confidence 47778888888877776643 1111111 112345556666666666777777665 55
Q ss_pred c
Q 009559 445 P 445 (532)
Q Consensus 445 ~ 445 (532)
+
T Consensus 259 P 259 (455)
T PRK14476 259 P 259 (455)
T ss_pred C
Confidence 4
No 392
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=21.19 E-value=2.6e+02 Score=30.48 Aligned_cols=94 Identities=17% Similarity=0.242 Sum_probs=53.3
Q ss_pred CCCCcchHHHHHHHHHHHH-HHcCCceEEEEcccccccccCCc-eeecCCHHHHhhhhhcCCcceecccCC---ccHHHH
Q 009559 182 CGGLCPGLNDVIRHIVITL-EIYGVKNIVGIPFGYRGFCDKEL-TEMPLSRKVVQNIHLSGGSLLGVSRGA---PTVSEI 256 (532)
Q Consensus 182 ~GG~cPGlNavIr~iv~~l-~~ygv~~V~Gi~~Gy~GL~~~~~-~~i~Lt~~~V~~i~~~GGSiLGTSR~~---~~~~~i 256 (532)
..|-||--| +--++.++ .++|.+++|=+= .++ -+.+.++-.-+.+...||.++|-..-+ .+.+.|
T Consensus 112 YtGa~PNQ~--~~pl~~~~~~~~G~~r~~lvG--------SdYv~pre~Nri~r~~l~~~GgevvgE~Y~plg~td~~~i 181 (363)
T PF13433_consen 112 YTGAAPNQQ--LLPLIDYLLENFGAKRFYLVG--------SDYVYPRESNRIIRDLLEARGGEVVGERYLPLGATDFDPI 181 (363)
T ss_dssp E-S--GGGT--HHHHHHHHHHHS--SEEEEEE--------ESSHHHHHHHHHHHHHHHHTT-EEEEEEEE-S-HHHHHHH
T ss_pred EcCCCchhh--HHHHHHHHHhccCCceEEEec--------CCccchHHHHHHHHHHHHHcCCEEEEEEEecCCchhHHHH
Confidence 356788555 45567776 578966776331 122 111223334455677899999875533 378899
Q ss_pred HHHHHHhCCcEEE-EeCChhhHHHHHHHHH
Q 009559 257 VDSMEERGINMLF-VLGGNGTHAGANAIHN 285 (532)
Q Consensus 257 vd~L~~~gId~L~-vIGGdGT~~gA~~L~e 285 (532)
++.+++.+=|.+| .+-||.+..--.++++
T Consensus 182 i~~I~~~~Pd~V~stlvG~s~~aF~r~~~~ 211 (363)
T PF13433_consen 182 IAEIKAAKPDFVFSTLVGDSNVAFYRAYAA 211 (363)
T ss_dssp HHHHHHHT-SEEEEE--TTCHHHHHHHHHH
T ss_pred HHHHHhhCCCEEEEeCcCCcHHHHHHHHHH
Confidence 9999999999877 4677877765555544
No 393
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=21.14 E-value=1.7e+02 Score=26.18 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=43.4
Q ss_pred HHhhhhhcCCcceecc----cC-Cc-cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeec
Q 009559 232 VVQNIHLSGGSLLGVS----RG-AP-TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPK 301 (532)
Q Consensus 232 ~V~~i~~~GGSiLGTS----R~-~~-~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPK 301 (532)
++..|.. ||-++=|+ +. .+ ...+.++.|.+.++.+|.+--|..--.--..+.++|.+ ++++++-+|.
T Consensus 35 d~~~~l~-~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~--~~lPli~ip~ 107 (123)
T PF07905_consen 35 DPSDWLR-GGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADE--LGLPLIEIPW 107 (123)
T ss_pred CHHHhCC-CCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHH--cCCCEEEeCC
Confidence 5566644 66655454 22 22 36789999999999999995552222333445556655 4578999987
No 394
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=21.12 E-value=2.1e+02 Score=29.62 Aligned_cols=108 Identities=21% Similarity=0.289 Sum_probs=68.1
Q ss_pred ceEeeeec--ccccCCCCCC---------cc---CChhhHH--HHHHHHHHHHHHhhhhccccEEEEEecCCCccHHHHH
Q 009559 294 VAVVGVPK--TIDNDILLMD---------KT---FGFDTAV--EEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMH 357 (532)
Q Consensus 294 I~VIGIPK--TIDNDI~~tD---------~S---fGFdTAv--~~a~~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~ 357 (532)
..|--||- .+|-++|.+= .. |+.-++- +.+.++++.+-++.-. .+. |=|+-|..-=-+-++
T Consensus 75 ~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-~r~--i~~LSGGQ~QRV~lA 151 (254)
T COG1121 75 LRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-DRQ--IGELSGGQKQRVLLA 151 (254)
T ss_pred CeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-CCc--ccccCcHHHHHHHHH
Confidence 46778887 5677777552 12 2222222 3344444444333322 222 467877777777788
Q ss_pred HhHhcCCccEEEcCCC--CCCCCChhHHHHHHHHHHhccCceEEEeecccc
Q 009559 358 ASLASGQIDICLIPES--PFNLHGPNGVLRHLKYLIETKGSAVVCVAEGAG 406 (532)
Q Consensus 358 aaLAsg~ad~~LIPE~--pf~leg~~~ll~~lk~~~~~kg~~VVVVAEGag 406 (532)
=|||+. +|+.++=|- ..|..+...+++-|++..++ |..|++|.--.+
T Consensus 152 RAL~~~-p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~ 200 (254)
T COG1121 152 RALAQN-PDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLG 200 (254)
T ss_pred HHhccC-CCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcH
Confidence 899986 999998663 23344556777778877667 999999987664
No 395
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=21.10 E-value=6.7e+02 Score=27.60 Aligned_cols=98 Identities=17% Similarity=0.245 Sum_probs=56.4
Q ss_pred CCcchH-HHHHHHHHHHHH-HcCCceEEEE-cccccccccCCceeecCCHHHHhhhhh-----------cCC--cceecc
Q 009559 184 GLCPGL-NDVIRHIVITLE-IYGVKNIVGI-PFGYRGFCDKELTEMPLSRKVVQNIHL-----------SGG--SLLGVS 247 (532)
Q Consensus 184 G~cPGl-NavIr~iv~~l~-~ygv~~V~Gi-~~Gy~GL~~~~~~~i~Lt~~~V~~i~~-----------~GG--SiLGTS 247 (532)
...|++ -+=|.++++.+. +++.. |+.+ ..||.|-....+.. .....++.+.. ... .+||..
T Consensus 130 tC~~~lIGdDi~~v~~e~~~~~~~~-vi~v~t~gf~g~~~~G~~~--a~~al~~~~~~~~~~~~~~~~~~~~~VNiiG~~ 206 (456)
T TIGR01283 130 TCVPGLIGDDLEAVCKAAAEKTGIP-VIPVDSEGFYGSKNLGNKL--ACDALLKHVIGTREPEPIPVGTTVHDINLIGEF 206 (456)
T ss_pred CChHHHhcCCHHHHHHHHHHHhCCC-EEEEECCCCccchhHHHHH--HHHHHHHHHhccCCcccccccCCCCcEEEEcCC
Confidence 344444 445677777764 56774 5555 47888743222110 00111111110 012 255644
Q ss_pred cCCccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHH
Q 009559 248 RGAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIH 284 (532)
Q Consensus 248 R~~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ 284 (532)
....+..++.+.|++.||+.+.++.|+.|+..-..+.
T Consensus 207 ~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~~ 243 (456)
T TIGR01283 207 NVAGEFWHVKPLLEKLGIRVLATITGDSRYAEVQTAH 243 (456)
T ss_pred CCcccHHHHHHHHHHcCCeEEEEeCCCCcHHHHHhcc
Confidence 4444788999999999999999999998876544433
No 396
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=20.94 E-value=3.5e+02 Score=24.93 Aligned_cols=74 Identities=16% Similarity=0.104 Sum_probs=51.7
Q ss_pred HHHHHHhCCcEEEEeCChhhHH-----HHHHHHHHHHhcCCCceEeeeecccccCCC--CCCccCChhhHHHHHHHHHHH
Q 009559 257 VDSMEERGINMLFVLGGNGTHA-----GANAIHNECRKRRMKVAVVGVPKTIDNDIL--LMDKTFGFDTAVEEAQRAINS 329 (532)
Q Consensus 257 vd~L~~~gId~L~vIGGdGT~~-----gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~--~tD~SfGFdTAv~~a~~aI~~ 329 (532)
++.+++.|++++=+-..+.... .+.++.+.+++.|+.|..++.+.-..++.. ....-- +..+++...++++.
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~ 79 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDL 79 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHH
T ss_pred ChHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHH
Confidence 3567788888888877777665 477888889999988878776655554432 111112 78888888888887
Q ss_pred HH
Q 009559 330 AY 331 (532)
Q Consensus 330 a~ 331 (532)
++
T Consensus 80 a~ 81 (213)
T PF01261_consen 80 AK 81 (213)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 397
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.90 E-value=1.3e+02 Score=32.44 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=70.1
Q ss_pred EEEeCCCCcchHH-HHHHHHHHHHHH-cCCc----e--E--EEEcccccccccCCce---eecCCHHHHhhhhhcCCcce
Q 009559 178 AIVTCGGLCPGLN-DVIRHIVITLEI-YGVK----N--I--VGIPFGYRGFCDKELT---EMPLSRKVVQNIHLSGGSLL 244 (532)
Q Consensus 178 aIvt~GG~cPGlN-avIr~iv~~l~~-ygv~----~--V--~Gi~~Gy~GL~~~~~~---~i~Lt~~~V~~i~~~GGSiL 244 (532)
+||++||==|=+| +.+..+++.+.. .|+. + | .|+..+++-|.+.++. .+.|..- -+..+. .+.
T Consensus 163 ~vVfmGmGEPL~N~d~v~~~l~~l~~~~Gl~~~~r~itVsTsG~~~~i~~L~~~dl~v~LaiSLha~-d~e~r~---~l~ 238 (356)
T PRK14462 163 NIVYMGMGEPLDNLDNVSKAIKIFSENDGLAISPRRQTISTSGLASKIKKLGEMNLGVQLAISLHAV-DDELRS---ELM 238 (356)
T ss_pred CeEEeCCcccccCHHHHHHHHHHhcCccCCCcCCCceEEECCCChHHHHHHHhcCCCeEEEEECCCC-CHHHHH---HhC
Confidence 9999988889999 677777777754 5652 1 1 5666666666554431 1112100 001111 133
Q ss_pred ecccCCccHHHHHHHHHHhC--------CcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeee
Q 009559 245 GVSRGAPTVSEIVDSMEERG--------INMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVP 300 (532)
Q Consensus 245 GTSR~~~~~~~ivd~L~~~g--------Id~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIP 300 (532)
+.++. ..+++++++++++- |.++++=|=|++...|.+|++.++..+ +.|--||
T Consensus 239 pv~~~-~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~--~~VnLIP 299 (356)
T PRK14462 239 PINKA-YNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIK--AKVNLIL 299 (356)
T ss_pred CCCcc-CCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcC--cEEEEEe
Confidence 33432 14566777665443 577888888999999999999887543 4555555
No 398
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=20.87 E-value=6.3e+02 Score=24.14 Aligned_cols=104 Identities=12% Similarity=0.048 Sum_probs=61.7
Q ss_pred cchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc---cHHHHHHHHHH
Q 009559 186 CPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP---TVSEIVDSMEE 262 (532)
Q Consensus 186 cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~---~~~~ivd~L~~ 262 (532)
.|-......+++..+.++|++++.-+.....+... +-....+.....|.++........ +....++.|++
T Consensus 121 ~p~~~~~~~a~~~~l~~~~w~~v~~v~~~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~l~~ 193 (298)
T cd06269 121 VPSDSSQAQAIVDLLKHFGWTWVGLVYSDDDYGRR-------LLELLEEELEKNGICVAFVESIPDGSEDIRRLLKELKS 193 (298)
T ss_pred CCCcHHHHHHHHHHHHHCCCeEEEEEEecchhhHH-------HHHHHHHHHHHCCeeEEEEEEcCCCHHHHHHHHHHHHh
Confidence 44556677777777778999877655444331111 111112222334666666555443 57889999999
Q ss_pred hCCcEEEEeCChhhHHHHHHHHHHHHhcCC--CceEeee
Q 009559 263 RGINMLFVLGGNGTHAGANAIHNECRKRRM--KVAVVGV 299 (532)
Q Consensus 263 ~gId~L~vIGGdGT~~gA~~L~ee~~kr~~--~I~VIGI 299 (532)
.+.+.++..+.. ..+..+.+.+.+.|+ +...|..
T Consensus 194 ~~~~viv~~~~~---~~~~~~l~~a~~~g~~~~~~~i~~ 229 (298)
T cd06269 194 STARVIVVFSSE---EDALRLLEEAVELGMMTGYHWIIT 229 (298)
T ss_pred cCCcEEEEEech---HHHHHHHHHHHHcCCCCCeEEEEE
Confidence 999887777653 235556667777776 3344443
No 399
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=20.86 E-value=4.9e+02 Score=32.07 Aligned_cols=106 Identities=14% Similarity=0.190 Sum_probs=57.9
Q ss_pred CcEEEEEeCCCCcch----HHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccC
Q 009559 174 EVKAAIVTCGGLCPG----LNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRG 249 (532)
Q Consensus 174 ~~kiaIvt~GG~cPG----lNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~ 249 (532)
-.||.|+=+|...=| .-..=.++.+.|...|+ +|+.+..--.... ......+.....
T Consensus 6 ~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~G~-~vi~v~~np~~~~--------~~~~~aD~~y~~---------- 66 (1050)
T TIGR01369 6 IKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGY-RVILVNSNPATIM--------TDPEMADKVYIE---------- 66 (1050)
T ss_pred CcEEEEECCCcchhcchhcccchHHHHHHHHHHcCC-EEEEEecchhhcc--------CChhcCCEEEEC----------
Confidence 357888877754323 11222356666777899 5766543221110 011111111100
Q ss_pred CccHHHHHHHHHHhCCcEEEE-eCChhhHHHHHHHHH--HHHhcCCCceEeeee
Q 009559 250 APTVSEIVDSMEERGINMLFV-LGGNGTHAGANAIHN--ECRKRRMKVAVVGVP 300 (532)
Q Consensus 250 ~~~~~~ivd~L~~~gId~L~v-IGGdGT~~gA~~L~e--e~~kr~~~I~VIGIP 300 (532)
+.+.+.+.+.+++.++|+++. .||+-.+..+..+++ .+++ +++.++|.+
T Consensus 67 p~~~~~v~~ii~~e~~DaIlp~~gg~~~l~la~~l~~~~~le~--~Gv~~~G~~ 118 (1050)
T TIGR01369 67 PLTPEAVEKIIEKERPDAILPTFGGQTALNLAVELEESGVLEK--YGVEVLGTP 118 (1050)
T ss_pred CCCHHHHHHHHHHhCCCEEEECCCChhHHHHHhhHHHHhHHHH--CCCEEECCC
Confidence 123467778888999999987 488877776655543 2333 457777763
No 400
>TIGR00111 pelota probable translation factor pelota. This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation.
Probab=20.70 E-value=5.6e+02 Score=27.44 Aligned_cols=133 Identities=15% Similarity=0.211 Sum_probs=70.3
Q ss_pred HHHHHHHHHHh-CCcEEEEeCChhhHHHHHHHHHHHH----hcCCCceEeeeecccccCCCCCCccCChhhHHHHHHH--
Q 009559 253 VSEIVDSMEER-GINMLFVLGGNGTHAGANAIHNECR----KRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQR-- 325 (532)
Q Consensus 253 ~~~ivd~L~~~-gId~L~vIGGdGT~~gA~~L~ee~~----kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~-- 325 (532)
++++.+.|..+ ++++++ |+|-|-.+ ..+.+++. +...+. ++ + |.|-|...+++++.+
T Consensus 183 f~~v~~~l~~~~~v~~iI-iaGPGf~k--~~f~~~l~~~~~~~~~k~-ii------~------~~s~g~~~gl~EvL~~~ 246 (351)
T TIGR00111 183 YKEIAKKLLNFDDLKTII-VAGPGFYK--NDFYDFIFERYPEEANKA-VL------E------NCSTGGRAGINEVLKRG 246 (351)
T ss_pred HHHHHHHHhhhcccCEEE-EECCHHHH--HHHHHHHHHHhhhhhCCc-EE------E------ecCCCchhHHHHHHhCh
Confidence 56788888776 677755 55555443 33344433 222121 22 1 256677778777766
Q ss_pred HHHHHHHhhhhccc-cE--EEEEecCCCc-----cHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccCce
Q 009559 326 AINSAYIEAHSAYH-GI--GIVKLMGRSS-----GYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSA 397 (532)
Q Consensus 326 aI~~a~~eA~S~~~-~V--~vVevMGR~s-----G~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg~~ 397 (532)
.+..+..+...+.. .+ =|.+.+..+. |.=-..-|+..|.++-.||-+.-|.- ... ...+-+..++.|--
T Consensus 247 ~v~~~l~d~k~~~E~~~l~~f~~~l~kd~~~~~YG~~eV~~Ale~GAVetLLIsD~l~~~--r~~-~~~l~~~v~~~gg~ 323 (351)
T TIGR00111 247 LVARILQETRYAKEIMVIDEFLEHLAKDGDKAVYGEDEVVKAAEYGAIEYLLVTDKVLVQ--REE-IEKLLDSVESMGGK 323 (351)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEECHHHHHHHHHcCCceEEEEecchhhh--HHH-HHHHHHHHHHcCCE
Confidence 34444444332111 00 0233333332 44445667888889999998877531 122 23333334566777
Q ss_pred EEEeecc
Q 009559 398 VVCVAEG 404 (532)
Q Consensus 398 VVVVAEG 404 (532)
|+|++..
T Consensus 324 V~i~Ss~ 330 (351)
T TIGR00111 324 VVILSTE 330 (351)
T ss_pred EEEEcCC
Confidence 8787764
No 401
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=20.66 E-value=1e+03 Score=25.62 Aligned_cols=112 Identities=9% Similarity=0.175 Sum_probs=60.6
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEc--cccccc---ccCCceeecCCHHHHhhhhhcCCcceeccc-C
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIP--FGYRGF---CDKELTEMPLSRKVVQNIHLSGGSLLGVSR-G 249 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~--~Gy~GL---~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR-~ 249 (532)
+.=|+.+|.+||.-+ ..+.+.++..|. .|++-. .|.+.+ ++.+-.++. ...+.+...+ ..+++ .
T Consensus 233 ~~RIl~tG~~~~~~~---~k~~~~iE~~G~-~VV~dd~c~g~r~~~~~v~e~~dp~~---aLA~~Yl~~~---~~c~~~~ 302 (380)
T TIGR02263 233 NCRVIICGMFCEQPP---LNLIKSIELSGC-YIVDDDFIIVHRFENNDVALAGDPLQ---NLALAFLHDS---ISTAAKY 302 (380)
T ss_pred CCEEEEECcCCCCch---HHHHHHHHHCCC-EEEEecCCccchhhhccCCCCCCHHH---HHHHHHhhCC---CCCcccc
Confidence 455777888887664 556666677887 476653 343333 332211111 1122232211 11222 1
Q ss_pred --C-c-cHHHHHHHHHHhCCcEEEEeCCh--hhHH-HHHHHHHHHHhcCCCceEeee
Q 009559 250 --A-P-TVSEIVDSMEERGINMLFVLGGN--GTHA-GANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 250 --~-~-~~~~ivd~L~~~gId~L~vIGGd--GT~~-gA~~L~ee~~kr~~~I~VIGI 299 (532)
+ . ..+.+.+.++++++|+++..-=- .++. ....|.+.+++. +|+++.|
T Consensus 303 ~~~~~~R~~~i~~lvke~~aDGVI~~~~~~C~~~~~e~~~lk~~l~e~--GIP~L~i 357 (380)
T TIGR02263 303 DDDEADKGKYLLDQVRKNAAEGVIFAAPSFCDPALLERPMLAARCKEH--GIPQIAF 357 (380)
T ss_pred CCChhhHHHHHHHHHHHhCCCEEEEhHhhcCChhhhhHHHHHHHHHHC--CCCEEEE
Confidence 1 1 34668899999999999987422 2222 234555666554 5777777
No 402
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=20.61 E-value=1.6e+02 Score=29.56 Aligned_cols=61 Identities=21% Similarity=0.184 Sum_probs=40.1
Q ss_pred EEecCCCccHHHHHHhHhcCCccEEEcCCC--CCCCCChhHHHHHHHHHHhccCceEEEeeccc
Q 009559 344 VKLMGRSSGYIAMHASLASGQIDICLIPES--PFNLHGPNGVLRHLKYLIETKGSAVVCVAEGA 405 (532)
Q Consensus 344 VevMGR~sG~LA~~aaLAsg~ad~~LIPE~--pf~leg~~~ll~~lk~~~~~kg~~VVVVAEGa 405 (532)
-++-|...=-+++..||+.+ ++++++=|- ..|.+....+++.|++..+.++..||+++.-.
T Consensus 142 ~~LS~Gq~qrv~laral~~~-p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~ 204 (265)
T PRK10253 142 DTLSGGQRQRAWIAMVLAQE-TAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL 204 (265)
T ss_pred ccCChHHHHHHHHHHHHhcC-CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 45666666678889999986 999998553 33333334566666655444577888887543
No 403
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]
Probab=20.57 E-value=4e+02 Score=26.90 Aligned_cols=77 Identities=18% Similarity=0.241 Sum_probs=53.1
Q ss_pred eEEEEcccccccccCCce------eec-CCHHHHhhhhhcCCcceecccCC--ccHHHHHHHHHHhCCcEEEEeCChhhH
Q 009559 207 NIVGIPFGYRGFCDKELT------EMP-LSRKVVQNIHLSGGSLLGVSRGA--PTVSEIVDSMEERGINMLFVLGGNGTH 277 (532)
Q Consensus 207 ~V~Gi~~Gy~GL~~~~~~------~i~-Lt~~~V~~i~~~GGSiLGTSR~~--~~~~~ivd~L~~~gId~L~vIGGdGT~ 277 (532)
+++|+-.|-.-|++.++. ++. ++.+..+.+...+=+ .-=.+.+ -|.+.+++...+++.+-++++||.|.
T Consensus 26 ~~v~aDgGa~~l~~~gl~P~~~vGDfDSv~~e~~~~~~~~~~~-~~f~~eKd~TD~elAl~~a~e~g~d~i~i~Ga~GG- 103 (212)
T COG1564 26 KIVAADGGANHLLELGLVPDLAVGDFDSVSEELLAYYKEKTVT-IKFPAEKDSTDLELALDEALERGADEIVILGALGG- 103 (212)
T ss_pred eEEEECcHHHHHHHcCCCccEEEecccccCHHHHHHHhhcCcc-eecChhhccchHHHHHHHHHHcCCCEEEEEecCCC-
Confidence 588888888777765432 122 577777777665444 2122222 37889999999999999999999998
Q ss_pred HHHHHHHH
Q 009559 278 AGANAIHN 285 (532)
Q Consensus 278 ~gA~~L~e 285 (532)
|.=+.|+.
T Consensus 104 R~DH~l~n 111 (212)
T COG1564 104 RLDHALAN 111 (212)
T ss_pred hHHHHHHH
Confidence 65566654
No 404
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=20.49 E-value=1.2e+03 Score=26.06 Aligned_cols=190 Identities=12% Similarity=0.132 Sum_probs=97.5
Q ss_pred HHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHHHHHHHH--hCCcEEEEe
Q 009559 194 RHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEIVDSMEE--RGINMLFVL 271 (532)
Q Consensus 194 r~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ivd~L~~--~gId~L~vI 271 (532)
..++..|..+|+++|||+.++ ++. . .++.+...+=.++. +|......-+.+..-+ .++-.+++-
T Consensus 7 ~~l~~~L~~~GV~~vFGvpG~--~~~-------~----l~~~~~~~~i~~i~-~rhE~~A~~mAdgyar~tg~~gv~~~t 72 (554)
T TIGR03254 7 HLVIDALKLNGINTIYGVVGI--PVT-------D----LARLAQAKGMRYIG-FRHEQSAGYAAAAAGFLTQKPGVCLTV 72 (554)
T ss_pred HHHHHHHHHcCCCEEEeCCCc--chh-------H----HHHHHhhcCCcEEE-eCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 457888899999999998765 111 0 11122222224443 4544433334443332 356788888
Q ss_pred CChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChh------------------hHHHHHHHHHHHHHHh
Q 009559 272 GGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFD------------------TAVEEAQRAINSAYIE 333 (532)
Q Consensus 272 GGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFd------------------TAv~~a~~aI~~a~~e 333 (532)
.|=|.......|++... -.++|+.|-...+.+..... .-+|+ +..+.+.+.|+.+...
T Consensus 73 ~GPG~~N~~~gia~A~~---~~~Pvl~I~G~~~~~~~~~~-~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~ 148 (554)
T TIGR03254 73 SAPGFLNGLTALANATT---NCFPMIMISGSSERHIVDLQ-QGDYEEMDQLAAAKPFAKAAYRVLRAEDIGIGIARAIRT 148 (554)
T ss_pred cCccHHhHHHHHHHHHh---cCCCEEEEEccCCccccccC-CCCcchhhHHHHhhhhheeEEEcCCHHHHHHHHHHHHHH
Confidence 89999988888886433 25778877666554422110 01122 1234556677777777
Q ss_pred hhhccccEEEEEecCCCccHHHHHHhHhcCCc-cEEEcCCCCC-CCCChhHHHHHHHHHHhccCceEEEeecccc
Q 009559 334 AHSAYHGIGIVKLMGRSSGYIAMHASLASGQI-DICLIPESPF-NLHGPNGVLRHLKYLIETKGSAVVCVAEGAG 406 (532)
Q Consensus 334 A~S~~~~V~vVevMGR~sG~LA~~aaLAsg~a-d~~LIPE~pf-~leg~~~ll~~lk~~~~~kg~~VVVVAEGag 406 (532)
|.+.+.|-..+++- --+..+- ...... .-...+..+- ...-....++.+.+++..-.+-+|++..|+.
T Consensus 149 A~~~~pGPV~l~iP----~Dv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~AkrPvi~~G~g~~ 218 (554)
T TIGR03254 149 AVSGRPGGVYLDLP----AAVLGQT-MEAEKAKKTLVKVVDPAPKQLPSPDSVDRAVELLKDAKRPLILLGKGAA 218 (554)
T ss_pred HhcCCCCcEEEEcC----HHHhhcc-ccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 76644454455542 1111000 000000 0000000000 0001134566677777777888999988874
No 405
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=20.30 E-value=8e+02 Score=23.85 Aligned_cols=120 Identities=12% Similarity=0.032 Sum_probs=60.8
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHHcC-CceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHH
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYG-VKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVS 254 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~~yg-v~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~ 254 (532)
+|+|+. ..+-|-....+.++-+.+..+| + +++-.. +-. ...+
T Consensus 1 ~~~~~~-~~~~~~~~~~~~~i~~~l~~~g~~-~l~~~~----------------------------------~~~-~~~~ 43 (247)
T cd06276 1 NILLLL-NKLSSFKEIIYNSFVNTLGKNAQV-DLYFHH----------------------------------YNE-DLFK 43 (247)
T ss_pred CEEEEE-ecCchHHHHHHHHHHHHHHhcCcE-EEEEEc----------------------------------Cch-HHHH
Confidence 356666 3346666667777777777777 5 332110 000 1122
Q ss_pred HHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccc--cCCCCCCccCChhhHHHHHHHHHHHHHH
Q 009559 255 EIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTID--NDILLMDKTFGFDTAVEEAQRAINSAYI 332 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTID--NDI~~tD~SfGFdTAv~~a~~aI~~a~~ 332 (532)
++.+.+ .+++|++++++....-.. +...+++ .+++||.+-.+.. ++++. .++-+..|...+++.+-.
T Consensus 44 ~~~~~~-~~~vdGvIi~~~~~~~~~---~~~~~~~--~~~PvV~i~~~~~~~~~~~~--V~~D~~~~~~~a~~~L~~--- 112 (247)
T cd06276 44 NIISNT-KGKYSGYVVMPHFKNEIQ---YFLLKKI--PKEKLLILDHSIPEGGEYSS--VAQDFEKAIYNALQEGLE--- 112 (247)
T ss_pred HHHHHH-hcCCCEEEEecCCCCcHH---HHHHhcc--CCCCEEEEcCcCCCCCCCCe--EEEccHHHHHHHHHHHHH---
Confidence 444554 689999999986532211 2122222 3467777766542 34432 233444444444443332
Q ss_pred hhhhccccEEEE
Q 009559 333 EAHSAYHGIGIV 344 (532)
Q Consensus 333 eA~S~~~~V~vV 344 (532)
+-.. +++|+++
T Consensus 113 ~~~G-~~~Ia~i 123 (247)
T cd06276 113 KLKK-YKKLILV 123 (247)
T ss_pred HhcC-CCEEEEE
Confidence 0012 5678777
No 406
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=20.18 E-value=8.3e+02 Score=26.90 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=57.8
Q ss_pred cCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCC-ceEEEEcccccccccCCceeecCCHHHHhhhhhcCC-cceecc
Q 009559 170 FKPEEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGV-KNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGG-SLLGVS 247 (532)
Q Consensus 170 f~p~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv-~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GG-SiLGTS 247 (532)
|.|+ +|+||= -.+--...-+-+++.+.++|+ .+||.+.-++.-+. + +. ....++.+....= .++ +
T Consensus 5 ~~p~--siavvG---aS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~-G-~~----~~~sl~~lp~~~Dlavi--~ 71 (447)
T TIGR02717 5 FNPK--SVAVIG---ASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEIL-G-VK----AYPSVLEIPDPVDLAVI--V 71 (447)
T ss_pred cCCC--EEEEEc---cCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccC-C-cc----ccCCHHHCCCCCCEEEE--e
Confidence 5554 477772 222223344456666667776 37998887654221 1 10 1112333321111 122 2
Q ss_pred cCCccHHHHHHHHHHhCCcEEEEeC-ChhhH-----HHHHHHHHHHHhcCCCceEee
Q 009559 248 RGAPTVSEIVDSMEERGINMLFVLG-GNGTH-----AGANAIHNECRKRRMKVAVVG 298 (532)
Q Consensus 248 R~~~~~~~ivd~L~~~gId~L~vIG-GdGT~-----~gA~~L~ee~~kr~~~I~VIG 298 (532)
.-.....++++.+.+.|+..++++- |.+.. .--.+|.+.+++.| +.|+|
T Consensus 72 vp~~~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~g--irvlG 126 (447)
T TIGR02717 72 VPAKYVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYG--MRLLG 126 (447)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcC--CEEEe
Confidence 2233567888999999999998753 32211 11235555666554 45554
No 407
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=20.15 E-value=2e+02 Score=32.99 Aligned_cols=11 Identities=36% Similarity=0.709 Sum_probs=7.9
Q ss_pred CCceEeeeecc
Q 009559 292 MKVAVVGVPKT 302 (532)
Q Consensus 292 ~~I~VIGIPKT 302 (532)
..++|||||-.
T Consensus 487 t~~pvi~vp~~ 497 (577)
T PLN02948 487 TPLPVIGVPVK 497 (577)
T ss_pred cCCCEEEcCCC
Confidence 35788888874
No 408
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=20.10 E-value=8.7e+02 Score=24.17 Aligned_cols=43 Identities=7% Similarity=0.099 Sum_probs=21.6
Q ss_pred HHHHHHH-HhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecc
Q 009559 255 EIVDSME-ERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKT 302 (532)
Q Consensus 255 ~ivd~L~-~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKT 302 (532)
+.++.|. +.++++++...+.... ..+.+.+++. ++++|.+-.+
T Consensus 56 ~~~~~li~~~~v~~vig~~~s~~~---~~~~~~~~~~--~vP~v~~~~~ 99 (312)
T cd06333 56 TNARKLIEEDKVDAIIGPSTTPAT---MAVAPVAEEA--KTPMISLAPA 99 (312)
T ss_pred HHHHHHHhhCCeEEEECCCCCHHH---HHHHHHHHhc--CCCEEEccCC
Confidence 4555444 4588887654433322 2233334333 5677776543
No 409
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=20.05 E-value=5.3e+02 Score=26.77 Aligned_cols=97 Identities=26% Similarity=0.362 Sum_probs=63.4
Q ss_pred hhhhhhhhcCCC-cccccCCCCcEEEEEeCCCCcchHHHHHHHHHHHHH-HcCCceEEEEcccccccccCCceeecCCHH
Q 009559 154 WVEQWVHRAGPR-EEIYFKPEEVKAAIVTCGGLCPGLNDVIRHIVITLE-IYGVKNIVGIPFGYRGFCDKELTEMPLSRK 231 (532)
Q Consensus 154 ~~~~~~~~agpr-~~i~f~p~~~kiaIvt~GG~cPGlNavIr~iv~~l~-~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~ 231 (532)
|.+...++|+.- .+||| + | -.| .|+.++...+. +|..-+|.|.++||-.-.+ . +.
T Consensus 96 l~~~Ll~~a~~~~~~vfl---------l--G-gkp---~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e-------~-~~ 152 (253)
T COG1922 96 LVEALLKRAAEEGKRVFL---------L--G-GKP---GVAEQAAAKLRAKYPGLKIVGSHDGYFDPEE-------E-EA 152 (253)
T ss_pred HHHHHHHHhCccCceEEE---------e--c-CCH---HHHHHHHHHHHHHCCCceEEEecCCCCChhh-------H-HH
Confidence 456677888765 55553 2 2 234 45556666663 5663479999998854322 2 46
Q ss_pred HHhhhhhcCCcceecccCCccHHH-HHHHHHHhCCcEEEEeCC
Q 009559 232 VVQNIHLSGGSLLGVSRGAPTVSE-IVDSMEERGINMLFVLGG 273 (532)
Q Consensus 232 ~V~~i~~~GGSiLGTSR~~~~~~~-ivd~L~~~gId~L~vIGG 273 (532)
.++.|...+=.+|=..=|-|.-|. |.++.+.+.....+-+||
T Consensus 153 i~~~I~~s~pdil~VgmG~P~QE~wi~~~~~~~~~~v~igVGg 195 (253)
T COG1922 153 IVERIAASGPDILLVGMGVPRQEIWIARNRQQLPVAVAIGVGG 195 (253)
T ss_pred HHHHHHhcCCCEEEEeCCCchhHHHHHHhHHhcCCceEEeccc
Confidence 788899888888755555555454 567788777777777776
Done!