Query 009559
Match_columns 532
No_of_seqs 262 out of 1409
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 07:54:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hig_A 6-phospho-1-fructokinas 100.0 2E-108 9E-113 880.7 38.5 421 78-530 28-455 (487)
2 3hno_A Pyrophosphate-dependent 100.0 4.2E-88 1.4E-92 715.6 33.1 335 173-515 2-366 (419)
3 1zxx_A 6-phosphofructokinase; 100.0 1.3E-86 4.5E-91 682.6 32.4 302 175-515 2-309 (319)
4 1pfk_A Phosphofructokinase; tr 100.0 2.9E-86 9.8E-91 680.3 33.2 301 175-514 3-310 (320)
5 4a3s_A 6-phosphofructokinase; 100.0 7.3E-86 2.5E-90 677.6 32.1 302 175-515 2-309 (319)
6 2f48_A Diphosphate--fructose-6 100.0 2.9E-82 1E-86 690.0 32.1 360 159-524 60-516 (555)
7 3o8l_A 6-phosphofructokinase, 100.0 2.2E-81 7.7E-86 701.5 27.3 335 174-529 15-377 (762)
8 3o8l_A 6-phosphofructokinase, 100.0 4.9E-78 1.7E-82 674.5 30.1 328 173-524 399-747 (762)
9 3o8o_A 6-phosphofructokinase s 100.0 5.9E-78 2E-82 674.4 27.9 333 173-527 4-365 (787)
10 3o8o_B 6-phosphofructokinase s 100.0 2.8E-77 9.6E-82 668.7 30.9 318 174-512 3-348 (766)
11 3opy_A 6-phosphofructo-1-kinas 100.0 1.2E-77 4.2E-82 677.8 27.5 332 172-525 208-568 (989)
12 3opy_B 6-phosphofructo-1-kinas 100.0 8.6E-77 2.9E-81 672.2 30.5 318 174-512 181-526 (941)
13 3o8o_B 6-phosphofructokinase s 100.0 4.5E-76 1.5E-80 659.0 29.3 325 174-525 393-755 (766)
14 3o8o_A 6-phosphofructokinase s 100.0 1.1E-75 3.7E-80 656.1 30.4 325 174-525 393-765 (787)
15 3opy_B 6-phosphofructo-1-kinas 100.0 1E-75 3.4E-80 663.5 30.4 326 173-525 570-931 (941)
16 3opy_A 6-phosphofructo-1-kinas 100.0 1.8E-74 6.1E-79 652.1 28.2 326 173-525 597-976 (989)
17 1z0s_A Probable inorganic poly 96.1 0.0086 3E-07 60.3 7.2 100 166-332 18-122 (278)
18 2an1_A Putative kinase; struct 95.7 0.035 1.2E-06 55.1 9.5 89 175-300 6-94 (292)
19 3l49_A ABC sugar (ribose) tran 95.2 1.2 4E-05 42.3 18.0 174 173-394 4-186 (291)
20 2i2c_A Probable inorganic poly 93.5 0.046 1.6E-06 54.1 3.9 45 254-301 18-69 (272)
21 3g1w_A Sugar ABC transporter; 93.2 5.2 0.00018 38.1 18.0 175 173-395 3-186 (305)
22 3e3m_A Transcriptional regulat 92.9 2.9 0.0001 41.4 16.1 174 175-402 71-258 (355)
23 3rot_A ABC sugar transporter, 91.7 9.5 0.00032 36.4 19.6 179 173-402 2-196 (297)
24 3h5o_A Transcriptional regulat 91.4 9.2 0.00031 37.4 17.6 175 174-401 62-246 (339)
25 3l6u_A ABC-type sugar transpor 90.7 11 0.00038 35.5 17.8 88 174-299 8-95 (293)
26 3k4h_A Putative transcriptiona 90.6 4.7 0.00016 38.1 14.0 123 173-345 7-138 (292)
27 3dbi_A Sugar-binding transcrip 89.4 9 0.00031 37.4 15.4 122 174-345 61-188 (338)
28 3qk7_A Transcriptional regulat 89.1 9.4 0.00032 36.4 15.0 123 174-347 6-135 (294)
29 3kjx_A Transcriptional regulat 88.9 11 0.00038 36.9 15.7 85 175-299 69-153 (344)
30 3egc_A Putative ribose operon 88.7 7.3 0.00025 36.9 13.8 91 174-308 8-98 (291)
31 3m9w_A D-xylose-binding peripl 88.2 15 0.00051 35.2 15.8 181 174-403 2-197 (313)
32 3kke_A LACI family transcripti 87.5 13 0.00044 35.6 14.9 120 175-345 16-138 (303)
33 3brq_A HTH-type transcriptiona 87.4 19 0.00064 33.7 16.2 123 174-345 19-146 (296)
34 3ksm_A ABC-type sugar transpor 87.3 17 0.0006 33.6 15.3 171 175-394 1-185 (276)
35 8abp_A L-arabinose-binding pro 87.2 20 0.0007 33.8 19.1 174 174-394 2-193 (306)
36 2bon_A Lipid kinase; DAG kinas 87.1 1 3.6E-05 45.4 7.0 51 255-308 73-125 (332)
37 3gbv_A Putative LACI-family tr 86.8 9.9 0.00034 35.9 13.4 183 173-404 7-210 (304)
38 2dri_A D-ribose-binding protei 86.1 22 0.00076 33.2 16.1 176 175-402 2-190 (271)
39 3o74_A Fructose transport syst 84.9 24 0.00083 32.6 19.9 174 175-401 3-187 (272)
40 2vk2_A YTFQ, ABC transporter p 84.6 24 0.00081 33.7 15.1 86 174-299 2-89 (306)
41 3d8u_A PURR transcriptional re 84.2 26 0.0009 32.5 18.4 124 175-346 4-128 (275)
42 2fep_A Catabolite control prot 83.8 30 0.001 32.8 17.3 123 174-346 16-141 (289)
43 1u0t_A Inorganic polyphosphate 83.7 0.57 2E-05 47.0 3.1 34 262-300 73-106 (307)
44 3hs3_A Ribose operon repressor 83.6 17 0.0006 34.2 13.5 117 174-345 10-129 (277)
45 3bil_A Probable LACI-family tr 83.3 36 0.0012 33.4 20.4 171 175-400 67-247 (348)
46 2qv7_A Diacylglycerol kinase D 82.2 1.2 4.2E-05 44.9 4.9 51 255-308 71-121 (337)
47 3gyb_A Transcriptional regulat 82.0 33 0.0011 32.0 15.9 170 174-402 5-184 (280)
48 2fvy_A D-galactose-binding per 81.3 37 0.0013 32.0 16.4 87 175-300 3-91 (309)
49 3k9c_A Transcriptional regulat 79.7 42 0.0014 31.7 16.2 171 174-402 12-193 (289)
50 1yt5_A Inorganic polyphosphate 79.5 0.88 3E-05 44.5 2.7 32 263-300 40-71 (258)
51 1dbq_A Purine repressor; trans 79.4 28 0.00097 32.5 13.2 122 174-344 7-132 (289)
52 3pfn_A NAD kinase; structural 78.9 1 3.5E-05 46.9 3.1 127 168-331 32-162 (365)
53 3afo_A NADH kinase POS5; alpha 77.9 0.75 2.5E-05 48.3 1.7 53 263-330 113-168 (388)
54 3s40_A Diacylglycerol kinase; 77.9 1.8 6.3E-05 43.0 4.5 53 252-308 52-104 (304)
55 3lkv_A Uncharacterized conserv 76.9 16 0.00053 35.7 10.9 73 173-275 7-80 (302)
56 2o20_A Catabolite control prot 76.6 57 0.0019 31.5 18.9 122 174-345 63-187 (332)
57 1qpz_A PURA, protein (purine n 75.4 61 0.0021 31.4 17.9 123 174-345 58-184 (340)
58 3gv0_A Transcriptional regulat 74.8 46 0.0016 31.3 13.4 122 174-345 8-134 (288)
59 2g0t_A Conserved hypothetical 74.2 23 0.00079 36.5 11.6 181 171-370 89-279 (350)
60 3uhj_A Probable glycerol dehyd 72.6 6.7 0.00023 40.7 7.3 50 252-306 94-143 (387)
61 2hsg_A Glucose-resistance amyl 72.6 37 0.0013 32.8 12.3 86 174-299 60-145 (332)
62 1jq5_A Glycerol dehydrogenase; 72.2 5.8 0.0002 40.5 6.6 47 252-303 74-120 (370)
63 3miz_A Putative transcriptiona 70.9 15 0.00052 34.9 8.9 176 174-402 13-205 (301)
64 3snr_A Extracellular ligand-bi 69.7 15 0.00052 35.3 8.7 104 186-299 116-222 (362)
65 3lkb_A Probable branched-chain 69.5 17 0.00059 35.9 9.2 105 186-300 123-231 (392)
66 4eyg_A Twin-arginine transloca 69.4 13 0.00046 36.1 8.3 103 187-299 121-229 (368)
67 4evq_A Putative ABC transporte 69.0 20 0.00067 35.0 9.4 103 187-299 133-238 (375)
68 3tb6_A Arabinose metabolism tr 67.2 80 0.0028 29.3 14.0 126 175-346 16-145 (298)
69 3uug_A Multiple sugar-binding 67.2 88 0.003 29.8 14.2 102 173-317 2-107 (330)
70 3lop_A Substrate binding perip 67.0 22 0.00076 34.7 9.4 104 186-299 122-228 (364)
71 3h75_A Periplasmic sugar-bindi 65.4 1E+02 0.0035 29.8 15.3 34 173-206 2-36 (350)
72 3s4y_A Thiamin pyrophosphokina 65.2 20 0.00067 35.1 8.5 103 165-276 11-134 (247)
73 3h5t_A Transcriptional regulat 64.5 23 0.00079 34.9 9.0 77 253-345 117-196 (366)
74 1oj7_A Hypothetical oxidoreduc 64.0 8.3 0.00028 40.0 5.8 53 252-304 94-162 (408)
75 3ox4_A Alcohol dehydrogenase 2 63.2 12 0.00042 38.5 6.9 56 252-307 76-144 (383)
76 3iv7_A Alcohol dehydrogenase I 62.7 8.7 0.0003 39.6 5.6 49 252-306 76-124 (364)
77 3l8m_A Probable thiamine pyrop 62.4 20 0.00069 34.1 7.7 69 207-276 24-101 (212)
78 2lnd_A De novo designed protei 62.1 10 0.00035 31.6 4.8 61 235-296 22-82 (112)
79 3clk_A Transcription regulator 61.8 44 0.0015 31.4 10.1 123 174-345 8-132 (290)
80 2rgy_A Transcriptional regulat 61.4 1.1E+02 0.0037 28.7 14.7 124 174-346 8-136 (290)
81 3ipc_A ABC transporter, substr 61.3 24 0.00081 34.2 8.3 104 186-299 118-225 (356)
82 3hl0_A Maleylacetate reductase 61.3 10 0.00035 38.8 5.8 49 252-306 75-123 (353)
83 3c3k_A Alanine racemase; struc 61.1 1.1E+02 0.0037 28.6 19.0 121 174-346 8-132 (285)
84 3huu_A Transcription regulator 60.8 70 0.0024 30.3 11.5 123 174-346 22-152 (305)
85 3jzd_A Iron-containing alcohol 60.8 9.8 0.00034 39.0 5.6 47 252-303 77-123 (358)
86 1rrm_A Lactaldehyde reductase; 60.4 14 0.00048 37.8 6.7 56 252-307 76-146 (386)
87 3sg0_A Extracellular ligand-bi 60.1 19 0.00066 35.0 7.4 104 186-299 140-246 (386)
88 2fn9_A Ribose ABC transporter, 60.1 1.1E+02 0.0038 28.4 16.1 86 175-299 3-89 (290)
89 3g85_A Transcriptional regulat 59.9 23 0.00078 33.3 7.7 123 173-346 10-135 (289)
90 3hut_A Putative branched-chain 57.3 34 0.0012 33.1 8.6 102 188-299 122-226 (358)
91 3bfj_A 1,3-propanediol oxidore 56.7 19 0.00063 36.9 6.9 55 252-306 80-147 (387)
92 3o1i_D Periplasmic protein TOR 56.7 41 0.0014 31.5 8.9 69 174-276 5-75 (304)
93 2h3h_A Sugar ABC transporter, 55.3 1.4E+02 0.0048 28.2 16.4 176 175-403 2-191 (313)
94 3e61_A Putative transcriptiona 54.8 1.3E+02 0.0045 27.7 13.1 121 174-345 8-129 (277)
95 3dzc_A UDP-N-acetylglucosamine 54.6 13 0.00045 37.9 5.3 120 167-299 17-141 (396)
96 3rf7_A Iron-containing alcohol 54.6 17 0.00058 37.6 6.2 54 252-305 94-163 (375)
97 3okf_A 3-dehydroquinate syntha 53.8 3.6 0.00012 43.1 0.9 105 175-319 63-172 (390)
98 3td9_A Branched chain amino ac 53.7 57 0.0019 31.7 9.6 106 186-300 129-237 (366)
99 1ujn_A Dehydroquinate synthase 51.3 5.1 0.00018 40.8 1.6 49 252-303 69-120 (348)
100 3bbl_A Regulatory protein of L 51.3 1.6E+02 0.0053 27.5 13.4 122 175-346 5-133 (287)
101 2gru_A 2-deoxy-scyllo-inosose 51.2 11 0.00038 38.6 4.1 63 252-320 79-144 (368)
102 3hcw_A Maltose operon transcri 50.3 82 0.0028 29.7 9.9 123 174-346 7-139 (295)
103 1vlj_A NADH-dependent butanol 50.2 19 0.00064 37.3 5.7 54 252-305 89-155 (407)
104 1o2d_A Alcohol dehydrogenase, 49.2 13 0.00045 38.0 4.3 51 252-302 86-149 (371)
105 3clh_A 3-dehydroquinate syntha 48.0 20 0.00068 36.3 5.4 49 252-303 70-121 (343)
106 1xah_A Sadhqs, 3-dehydroquinat 46.5 19 0.00064 36.6 4.9 49 252-303 75-126 (354)
107 1kq3_A Glycerol dehydrogenase; 46.4 14 0.00046 37.9 3.9 46 252-303 83-128 (376)
108 3eaf_A ABC transporter, substr 46.0 85 0.0029 30.9 9.6 106 186-300 121-232 (391)
109 3jy6_A Transcriptional regulat 44.9 1.9E+02 0.0065 26.7 21.7 125 173-348 6-133 (276)
110 3i09_A Periplasmic branched-ch 44.8 70 0.0024 31.2 8.7 99 187-295 122-223 (375)
111 3jvd_A Transcriptional regulat 44.8 2.2E+02 0.0076 27.4 14.1 166 174-401 64-238 (333)
112 1tjy_A Sugar transport protein 44.4 2.2E+02 0.0074 27.2 14.0 88 175-300 4-92 (316)
113 1ta9_A Glycerol dehydrogenase; 44.4 16 0.00053 38.8 4.0 86 176-303 93-179 (450)
114 2obn_A Hypothetical protein; s 43.8 58 0.002 33.5 8.1 159 170-349 72-236 (349)
115 1sg6_A Pentafunctional AROM po 42.0 28 0.00094 36.0 5.4 49 252-303 88-141 (393)
116 1usg_A Leucine-specific bindin 41.3 1.2E+02 0.0041 28.8 9.6 100 190-299 122-225 (346)
117 3mel_A Thiamin pyrophosphokina 40.5 27 0.00092 33.5 4.7 92 177-276 3-104 (222)
118 3cqj_A L-ribulose-5-phosphate 40.5 1.2E+02 0.0042 28.7 9.5 54 248-301 27-89 (295)
119 3o3m_B Beta subunit 2-hydroxya 40.1 1.3E+02 0.0046 30.7 10.2 133 174-328 229-373 (385)
120 3ce9_A Glycerol dehydrogenase; 39.7 19 0.00066 36.3 3.7 49 253-307 78-126 (354)
121 3brs_A Periplasmic binding pro 39.6 1.5E+02 0.005 27.5 9.7 128 173-345 4-138 (289)
122 3ot5_A UDP-N-acetylglucosamine 39.5 24 0.00083 36.1 4.5 123 166-300 16-145 (403)
123 3n0w_A ABC branched chain amin 39.4 73 0.0025 31.2 7.8 100 186-295 123-225 (379)
124 3h5l_A Putative branched-chain 38.6 78 0.0027 31.5 8.0 66 232-299 184-252 (419)
125 4f11_A Gamma-aminobutyric acid 38.1 98 0.0033 30.9 8.7 99 186-294 135-233 (433)
126 3qbe_A 3-dehydroquinate syntha 38.1 42 0.0014 34.6 6.0 49 252-303 88-139 (368)
127 2x7x_A Sensor protein; transfe 38.0 2.7E+02 0.0093 26.5 12.2 86 174-299 6-93 (325)
128 4h1h_A LMO1638 protein; MCCF-l 38.0 18 0.00063 36.5 3.2 84 176-284 14-99 (327)
129 1cz3_A Dihydrofolate reductase 37.9 18 0.00062 32.5 2.9 48 251-305 80-129 (168)
130 3lm8_A Thiamine pyrophosphokin 37.6 13 0.00044 35.8 1.9 70 207-276 27-105 (222)
131 3ihk_A Thiamin pyrophosphokina 37.4 74 0.0025 30.3 7.2 95 178-285 4-108 (218)
132 1vdr_A DHFR, dihydrofolate red 36.9 16 0.00056 32.8 2.4 51 252-309 81-131 (162)
133 2rjo_A Twin-arginine transloca 36.3 2.9E+02 0.0099 26.3 12.3 91 174-303 5-98 (332)
134 3i45_A Twin-arginine transloca 35.2 1.5E+02 0.0053 28.9 9.5 104 186-299 123-233 (387)
135 2qip_A Protein of unknown func 33.9 40 0.0014 30.3 4.5 48 252-302 95-144 (165)
136 3trh_A Phosphoribosylaminoimid 33.8 46 0.0016 31.1 4.9 86 174-302 6-93 (169)
137 2iuy_A Avigt4, glycosyltransfe 33.2 2.1E+02 0.0072 27.2 9.9 81 173-276 2-96 (342)
138 3lft_A Uncharacterized protein 32.8 2.6E+02 0.0088 26.3 10.4 66 174-273 2-71 (295)
139 3uhf_A Glutamate racemase; str 32.8 79 0.0027 31.3 6.8 101 166-299 16-116 (274)
140 2nrr_A Uvrabc system protein C 31.9 68 0.0023 29.6 5.7 85 250-338 60-152 (159)
141 4grd_A N5-CAIR mutase, phospho 31.8 38 0.0013 31.8 3.9 87 173-302 11-99 (173)
142 1a9x_A Carbamoyl phosphate syn 31.2 1.6E+02 0.0056 34.3 10.1 105 174-299 7-118 (1073)
143 3iix_A Biotin synthetase, puta 31.2 3.8E+02 0.013 26.1 12.7 100 179-292 104-222 (348)
144 1x60_A Sporulation-specific N- 31.1 68 0.0023 24.9 4.9 50 244-293 14-72 (79)
145 3ors_A N5-carboxyaminoimidazol 30.8 41 0.0014 31.2 4.0 87 174-303 3-91 (163)
146 4fe7_A Xylose operon regulator 30.4 4.2E+02 0.014 26.4 20.9 32 174-206 25-56 (412)
147 2a5h_A L-lysine 2,3-aminomutas 30.3 3.6E+02 0.012 27.8 11.6 157 179-349 166-334 (416)
148 3fst_A 5,10-methylenetetrahydr 30.2 47 0.0016 33.4 4.7 55 246-300 90-153 (304)
149 2omk_A Hypothetical protein; s 30.1 3.7E+02 0.013 25.7 11.3 92 175-276 32-131 (231)
150 1uta_A FTSN, MSGA, cell divisi 29.6 52 0.0018 26.0 4.0 53 244-296 14-75 (81)
151 3apt_A Methylenetetrahydrofola 29.3 38 0.0013 34.0 3.9 99 195-300 33-150 (310)
152 4f06_A Extracellular ligand-bi 28.6 2.6E+02 0.009 27.2 9.9 83 186-275 120-205 (371)
153 1fpz_A Cyclin-dependent kinase 28.4 3.4E+02 0.012 24.7 10.6 109 238-360 38-156 (212)
154 3kuu_A Phosphoribosylaminoimid 28.2 39 0.0013 31.7 3.4 85 175-302 13-99 (174)
155 2nrt_A Uvrabc system protein C 27.6 1E+02 0.0036 29.7 6.4 51 249-302 64-119 (220)
156 2h4a_A YRAM (HI1655); perplasm 27.6 85 0.0029 31.2 6.1 97 192-299 109-207 (325)
157 2i6j_A Ssoptp, sulfolobus solf 27.4 2.6E+02 0.0087 23.8 8.6 52 254-308 18-73 (161)
158 1iv0_A Hypothetical protein; r 26.8 44 0.0015 28.0 3.2 29 280-308 40-68 (98)
159 3u0h_A Xylose isomerase domain 26.2 61 0.0021 30.3 4.5 50 251-300 16-69 (281)
160 2yxb_A Coenzyme B12-dependent 26.0 2.1E+02 0.0071 25.6 7.9 87 173-275 17-109 (161)
161 2gd9_A Hypothetical protein YY 25.7 35 0.0012 31.0 2.6 47 252-305 106-154 (189)
162 3jtw_A Dihydrofolate reductase 25.7 28 0.00095 31.7 1.9 45 252-303 97-143 (178)
163 3ky8_A Putative riboflavin bio 25.4 32 0.0011 32.1 2.4 47 251-305 113-161 (197)
164 3qi7_A Putative transcriptiona 25.4 3.3E+02 0.011 28.1 10.2 124 173-301 11-166 (371)
165 2xdq_B Light-independent proto 25.3 6.2E+02 0.021 26.7 14.7 157 254-445 78-243 (511)
166 1mio_A Nitrogenase molybdenum 25.2 4.2E+02 0.014 28.4 11.4 146 253-446 123-280 (533)
167 4fu0_A D-alanine--D-alanine li 25.2 19 0.00064 36.3 0.7 37 173-211 2-41 (357)
168 4eys_A MCCC family protein; MC 24.9 68 0.0023 32.7 4.8 84 175-283 6-93 (346)
169 3nkl_A UDP-D-quinovosamine 4-d 24.5 94 0.0032 26.2 5.0 46 254-301 55-100 (141)
170 2b3z_A Riboflavin biosynthesis 24.1 82 0.0028 32.3 5.3 59 240-305 271-331 (373)
171 1o4v_A Phosphoribosylaminoimid 24.0 49 0.0017 31.3 3.2 51 247-304 51-102 (183)
172 2h0a_A TTHA0807, transcription 23.9 1.5E+02 0.0051 27.2 6.7 120 176-346 1-122 (276)
173 3tla_A MCCF; serine protease, 23.6 52 0.0018 34.0 3.7 84 175-283 44-129 (371)
174 3nbm_A PTS system, lactose-spe 23.3 1.3E+02 0.0046 25.4 5.7 58 173-232 5-63 (108)
175 2i2x_B MTAC, methyltransferase 23.1 3.1E+02 0.011 26.2 9.1 91 171-277 120-215 (258)
176 3lmz_A Putative sugar isomeras 23.1 2.4E+02 0.0083 26.0 8.1 50 251-300 30-83 (257)
177 2qu7_A Putative transcriptiona 23.0 1.3E+02 0.0043 28.0 6.1 122 173-344 7-128 (288)
178 3lp6_A Phosphoribosylaminoimid 22.8 64 0.0022 30.3 3.7 91 170-303 3-95 (174)
179 2qru_A Uncharacterized protein 22.4 2E+02 0.0067 26.7 7.3 42 315-360 73-115 (274)
180 2iks_A DNA-binding transcripti 22.4 4.6E+02 0.016 24.2 17.0 126 174-347 20-147 (293)
181 1zl0_A Hypothetical protein PA 22.0 85 0.0029 31.6 4.8 29 176-206 19-47 (311)
182 3oow_A Phosphoribosylaminoimid 21.9 79 0.0027 29.4 4.1 49 248-303 44-93 (166)
183 2iw1_A Lipopolysaccharide core 21.4 1.8E+02 0.0063 27.7 7.0 87 175-272 1-88 (374)
184 1xri_A AT1G05000; structural g 21.1 3.2E+02 0.011 23.1 7.9 93 256-363 25-118 (151)
185 2vpi_A GMP synthase; guanine m 21.0 87 0.003 29.4 4.4 95 167-321 17-111 (218)
186 1rpx_A Protein (ribulose-phosp 21.0 4.9E+02 0.017 23.9 10.1 120 173-302 9-129 (230)
187 3oaa_G ATP synthase gamma chai 20.8 4E+02 0.014 26.2 9.4 17 184-200 85-102 (286)
188 3fst_A 5,10-methylenetetrahydr 20.7 3.8E+02 0.013 26.7 9.3 162 176-355 85-285 (304)
189 3ctp_A Periplasmic binding pro 20.7 5.1E+02 0.017 24.5 10.1 117 174-345 60-179 (330)
190 2yxb_A Coenzyme B12-dependent 20.6 2.5E+02 0.0087 25.0 7.3 98 229-329 34-145 (161)
191 1ccw_A Protein (glutamate muta 20.5 1.7E+02 0.0057 25.4 5.9 86 172-273 1-92 (137)
192 2qh8_A Uncharacterized protein 20.4 5.3E+02 0.018 24.1 11.4 72 173-274 7-79 (302)
193 2pn1_A Carbamoylphosphate synt 20.4 5.6E+02 0.019 24.4 10.6 45 252-299 60-104 (331)
194 1j3k_A Bifunctional dihydrofol 20.3 54 0.0018 32.8 2.9 52 252-310 145-198 (280)
195 2bl9_A Dihydrofolate reductase 20.2 45 0.0016 32.5 2.3 52 252-310 154-207 (238)
196 4e5s_A MCCFLIKE protein (BA_56 20.1 84 0.0029 31.8 4.3 83 176-283 14-98 (331)
197 3fro_A GLGA glycogen synthase; 20.1 3.8E+02 0.013 26.0 9.1 44 174-218 2-48 (439)
No 1
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=100.00 E-value=2.5e-108 Score=880.74 Aligned_cols=421 Identities=39% Similarity=0.665 Sum_probs=383.5
Q ss_pred cccCCcccccCCCCCCCCCcccccCCCCcccCCCCCCCCCcccCCcccCCCeeeeeeeccCCCCCCCCcccccccchhhh
Q 009559 78 RFSLPHITDIFRDATPIPSTFCLRMRTPVTEDFADGYPSDEKWHGYINNNDRVLLKVINFSSPTSAGAECIDRDCTWVEQ 157 (532)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (532)
.|.+|+|.. +++|||+ ..+. . +++||+|+|+|++++..+.++ +..+.|.|.+.
T Consensus 28 ~~~i~~lg~-----~~~~~p~--------~~~~--~------~~~~~~~~~~v~~~~~~~~~~------~~~~~~~~~~~ 80 (487)
T 2hig_A 28 DLKVDRLPG-----ADYPNPS--------KKYS--S------RTEFRDKTDYIMYNPRPRDEP------SSENPVSVSPL 80 (487)
T ss_dssp TTCCEECSC-----CCEECTT--------CCGG--G------GGGSBSSCCEEESCCCBCC-----------CCBBSCCC
T ss_pred ccccCcCCC-----CCCCCcc--------cccC--C------CCeeeCCCCEEEEeeeccCCC------ccccccccchH
Confidence 456666652 6788744 3331 1 378999999999998775432 11234666677
Q ss_pred hhhhcCCCcccccCCCCcEEEEEeCCCCcchHHHHHHHHHHHHH-HcCCceEEEEccccccccc---CCceeecCCHHHH
Q 009559 158 WVHRAGPREEIYFKPEEVKAAIVTCGGLCPGLNDVIRHIVITLE-IYGVKNIVGIPFGYRGFCD---KELTEMPLSRKVV 233 (532)
Q Consensus 158 ~~~~agpr~~i~f~p~~~kiaIvt~GG~cPGlNavIr~iv~~l~-~ygv~~V~Gi~~Gy~GL~~---~~~~~i~Lt~~~V 233 (532)
+|++||||++|||+|+.+||||+||||||||||+|||++|+++. .||+.+||||++||+||++ +++ ++|+++.|
T Consensus 81 ~~~~agpr~~i~f~~~~~rIgIltsGGdaPGmNaaIravv~~a~~~~g~~~V~Gi~~G~~GLl~~~~~~~--~~L~~~~V 158 (487)
T 2hig_A 81 LCELAAARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTA--IELHRGRV 158 (487)
T ss_dssp EEEECCCBSEESSCGGGCEEEEEECSSCCTTHHHHHHHHHHHHHHHHCCSEEEECSTGGGGGSHHHHTTC--EEECHHHH
T ss_pred HHHHcCCcceeeecCCCcEEEEEecCCCcchhhHHHHHHHHHHHHhCCCcEEEEEccCHHHhhhccCCCE--EECCHHHH
Confidence 99999999999999999999999999999999999999999996 4898789999999999975 355 56899999
Q ss_pred hhhhhcCCcceecccCCccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCcc
Q 009559 234 QNIHLSGGSLLGVSRGAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKT 313 (532)
Q Consensus 234 ~~i~~~GGSiLGTSR~~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~S 313 (532)
++|+++|||+|||||++++.++++++|++++||+||+||||||+++|++|++++++++++|+||||||||||||++||+|
T Consensus 159 ~~i~~~GGTiLGTsR~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD~T 238 (487)
T 2hig_A 159 TNIHHYGGTILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRT 238 (487)
T ss_dssp TTGGGSSSCSSCCCCSCCCHHHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSSCC
T ss_pred HHHHhCCCCeeccCCCCCCHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhc
Q 009559 314 FGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIET 393 (532)
Q Consensus 314 fGFdTAv~~a~~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~ 393 (532)
||||||+++++++|+++++||.|+.++|+|||||||+|||||++++||+|+||+|||||.||+++ +++++|++++++
T Consensus 239 ~GFdTAv~~~~eaId~i~~tA~Sh~~rv~vVEVMGR~aG~LAl~agLA~g~ad~ilIPE~p~~l~---~i~~~i~~r~~~ 315 (487)
T 2hig_A 239 FGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQ---EVMSLLERRFCH 315 (487)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTSTTEEEEEEECCSSCCHHHHHHHHHHTCCSEEECTTSCCCHH---HHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHhhCCCCEEEeCCCCCCHH---HHHHHHHHHHhc
Confidence 99999999999999999999998667999999999999999999999998899999999999986 899999999999
Q ss_pred cCceEEEeeccccchhhcccccccCCCCccccchHHHHHHHHHHHHHhcCcce---eEEEeCCCceeccCCCCchhHHHH
Q 009559 394 KGSAVVCVAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPI---DVKYIDPTYMIRACRANASDGILC 470 (532)
Q Consensus 394 kg~~VVVVAEGag~~l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~~---~vk~idpgy~iRs~~p~a~D~i~c 470 (532)
++|+|||||||+++.++.+...+|++||+++++++.+|+++|+++|++.|+++ ++|+++|||+|||++|+++|++||
T Consensus 316 k~~~IIvVaEGag~~~~~~~~~~Da~G~~~l~~i~~~l~~~i~~~~~~~g~~~~~f~~R~~~lGh~QRgg~Psa~Dr~la 395 (487)
T 2hig_A 316 SRSCVIIVAEGFGQDWGRGSGGYDASGNKKLIDIGVILTEKVKAFLKANKSRYPDSTVKYIDPSYMIRACPPSANDALFC 395 (487)
T ss_dssp CSEEEEEEETTTTGGGCCC--CBCTTSCBCCCCHHHHHHHHHHHHHHTTTTTSSSCEEEEECCHHHHHSSCCCHHHHHHH
T ss_pred CCcEEEEEeCCCcccccccccccccccCcchhHHHHHHHHHHHHHHhhcCccccccceEEccCCcCccCCCCCHHHHHHH
Confidence 99999999999998877666678999999999999999999999998777766 899999999999999999999999
Q ss_pred HHhhHHHHHhHhcCCccEEEEEECCeeEEechhhHhcCCCcCCCCcHHHHHHHHhcCCCC
Q 009559 471 TVLGQNAVHGAFAGFSGITVGLCNTHYAYFPIPEVISYPRAVDPNSRMWHRCLTSTGQPD 530 (532)
Q Consensus 471 ~~LG~~AV~~a~aG~Tg~mVgi~n~~~~~vPi~ev~~~~k~vd~~~~~w~~~l~~tgQp~ 530 (532)
++||..||+++++|+||+|||+++++++++||+++++..|.|++++.||+++++.|+||.
T Consensus 396 ~~lG~~AV~~l~~G~tg~mVgi~~~~i~~vPl~ev~~~~k~v~~~~~~w~~~~~~~~~~~ 455 (487)
T 2hig_A 396 ATLATLAVHEAMAGATGCIIAMRHNNYILVPIKVATSVRRVLDLRGQLWRQVREITVDLG 455 (487)
T ss_dssp HHHHHHHHHHHHTTEESEEEEEETTEEEEEEHHHHTTEEEEECTTSHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEEEECCEEEEEEHHHHHccCCCcCcchHHHHHHHHHhCCcc
Confidence 999999999999999999999999999999999999999999999999999999999984
No 2
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=100.00 E-value=4.2e-88 Score=715.59 Aligned_cols=335 Identities=20% Similarity=0.283 Sum_probs=295.0
Q ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCC--ceEEEEcccccccccCCceeec-CCHHHHhhhhhcCCcceecccC
Q 009559 173 EEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGV--KNIVGIPFGYRGFCDKELTEMP-LSRKVVQNIHLSGGSLLGVSRG 249 (532)
Q Consensus 173 ~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv--~~V~Gi~~Gy~GL~~~~~~~i~-Lt~~~V~~i~~~GGSiLGTSR~ 249 (532)
.+.||||+||||||||||++||++|+++..+|. .+||||++||+||+++++.++. ++++.|+.|+++|||+|||||+
T Consensus 2 ~~kni~VltsGGdapGmNa~Ir~vv~~a~~~g~~~~~V~Gi~~G~~GLl~~~~~~l~~~~~~~v~~i~~~GGtiLGSsR~ 81 (419)
T 3hno_A 2 AAKNAFYAQSGGVTAVINASAAGVIEAARKQSGKIGRIYAGRNGIIGALTEDLIDTGQESDAAISALRYTPSGAFGSCRY 81 (419)
T ss_dssp CCCEEEEEECSSCCSSHHHHHHHHHHHHHHHCSSCCCEEEETTTHHHHHTTCEEEGGGSCHHHHHHGGGCCSCTTCCCCC
T ss_pred CCceEEEEccCCChHHHHHHHHHHHHHHHHcCCCCcEEEEEeCChHHhCCCCcccCccccHHHHHHHHcCCCceecCCCC
Confidence 356999999999999999999999999988875 3699999999999999886553 5778999999999999999998
Q ss_pred Cc--------cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHH
Q 009559 250 AP--------TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVE 321 (532)
Q Consensus 250 ~~--------~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~ 321 (532)
++ ..++++++|++++||+||+||||||+++|++|++++++++++|+||||||||||||++||+|||||||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkTIDNDl~~tD~t~GFdTA~~ 161 (419)
T 3hno_A 82 KLKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVAK 161 (419)
T ss_dssp C------CHHHHHHHHHHHHHTTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSSSCTTHHHHHH
T ss_pred CccccccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEecccccCCCcCCCCCCCchHHHH
Confidence 65 4678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccc---cEEEEEecCCCccHHHHHHhHhc----CCccEEEcCCCCCCCCChhHHHHHHHHHHhcc
Q 009559 322 EAQRAINSAYIEAHSAYH---GIGIVKLMGRSSGYIAMHASLAS----GQIDICLIPESPFNLHGPNGVLRHLKYLIETK 394 (532)
Q Consensus 322 ~a~~aI~~a~~eA~S~~~---~V~vVevMGR~sG~LA~~aaLAs----g~ad~~LIPE~pf~leg~~~ll~~lk~~~~~k 394 (532)
+++++|+++..++.|+++ ||+|||||||+|||||++++||+ +.||+|||||+||+++ .++++|+++++++
T Consensus 162 ~~~~~i~~~~~d~~ss~~sh~rv~iVEvMGR~aG~lAl~aglA~~~~~~gad~ilIPE~~f~~~---~~~~~i~~~~~~~ 238 (419)
T 3hno_A 162 YIAVSTLEASFDVASMSATSTKVFVLEVMGRHAGWIAAAGGLASSPEREIPVVILFPEISFDKQ---KFLAKVDSCVKKF 238 (419)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCEEEEEECCSSCCHHHHGGGGGCCSSSCCCEEEECTTSCCCHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCcEEEEEcCCcChhHHHHHHHHhcccCCCCceEEEeCCCCCCHH---HHHHHHHHHHHhC
Confidence 999999999777776655 89999999999999999999994 2399999999999975 8999999999989
Q ss_pred CceEEEeeccccc---hhhcccccccCCCCccccchHHHHHHHHHHHHHhcCcceeEEEeCCCceeccCC--CCchhHHH
Q 009559 395 GSAVVCVAEGAGQ---SLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACR--ANASDGIL 469 (532)
Q Consensus 395 g~~VVVVAEGag~---~l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~~~vk~idpgy~iRs~~--p~a~D~i~ 469 (532)
+|+|||||||+.+ .++.+...+|++||++|++++.+|+++|++++ | +++|++.|||+|||++ |+++|++|
T Consensus 239 ~~~iIvVaEG~~~~~g~~i~~~~~~D~~G~~~l~gi~~~la~~i~~~~---g--~~~R~~~lGh~QRgg~p~ps~~Dr~l 313 (419)
T 3hno_A 239 GYCSVVVSEGVKGDDGKFLSDQGVRDAFGHAQLGGVAPVVASMVKEGL---G--LKYHWGVADYLQRAARHIASKTDVEQ 313 (419)
T ss_dssp SCEEEEEETTCCCSSSCC---------------CCSHHHHHHHHHHHH---C--CCEEEEECTHHHHSCGGGCBHHHHHH
T ss_pred CCEEEEEeCCCcccCCcchhcccccccccCcccCcHHHHHHHHHHHHh---C--CceEEcccchhhccCCCCCCHHHHHH
Confidence 9999999999975 34444557899999999999999999999986 4 4799999999999999 79999999
Q ss_pred HHHhhHHHHHhHhcCCccEEEEEECC-------eeEEechhhHhcCCCcCCCC
Q 009559 470 CTVLGQNAVHGAFAGFSGITVGLCNT-------HYAYFPIPEVISYPRAVDPN 515 (532)
Q Consensus 470 c~~LG~~AV~~a~aG~Tg~mVgi~n~-------~~~~vPi~ev~~~~k~vd~~ 515 (532)
|++||..||+++++|+||+||+++++ +++.+||+++++.+|.|+++
T Consensus 314 a~~lG~~Av~~~~~G~~g~mv~~~~~~~~~y~~~~~~vpl~~~~~~~k~v~~~ 366 (419)
T 3hno_A 314 AYAMGQAAVEFAVQGHNSVMPTIERISARPYQWKVGMAQLSQVANVEKMMPEN 366 (419)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEEEEEEC-CCEEEEEEEEHHHHSSCCCCCCGG
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEECCCCCccccEEEEeeHHHHhcccCCCCHH
Confidence 99999999999999999999999986 69999999999999988764
No 3
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=100.00 E-value=1.3e-86 Score=682.61 Aligned_cols=302 Identities=31% Similarity=0.477 Sum_probs=283.0
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc---
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP--- 251 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~--- 251 (532)
+||||+||||||||||++||++|+++..+|+ +||||++||+||+++++ ++|+++.|++|+++|||+|||||+++
T Consensus 2 k~i~IltsGGdapGmNaair~vv~~a~~~g~-~v~Gi~~G~~GL~~~~~--~~l~~~~v~~i~~~GGt~LGssR~~~~~~ 78 (319)
T 1zxx_A 2 KRIGILTSGGDAPGMNAAVRAVTRVAIANGL-EVFGIRYGFAGLVAGDI--FPLESEDVAHLINVSGTFLYSARYPEFAE 78 (319)
T ss_dssp CEEEEEECSSCCTTHHHHHHHHHHHHHTTTC-EEEEECTHHHHHHHTCE--EECCGGGGTTCTTCCSCTTCCCCCGGGTS
T ss_pred CEEEEEccCCCchhHHHHHHHHHHHHHHCCC-EEEEEccChHHHcCCCE--EECCHHHHHhHHhCCCcccccCCCCccCC
Confidence 5899999999999999999999999988998 79999999999999986 56899999999999999999999885
Q ss_pred --cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHH
Q 009559 252 --TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINS 329 (532)
Q Consensus 252 --~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~ 329 (532)
+.++++++|++++||+||+||||||+++|++|+++ +|+|||||||||||+++||+|||||||+++++++|++
T Consensus 79 ~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td~t~GfdTA~~~~~~aid~ 152 (319)
T 1zxx_A 79 EEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRH------GFNSIGLPGTIDNDIPYTDATIGYDTACMTAMDAIDK 152 (319)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEEETTCCCTTCSCCEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHh------CCCEEEEeecccCCCCCCcCCCCHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999974 6999999999999999999999999999999999999
Q ss_pred HHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHh-ccCceEEEeeccccch
Q 009559 330 AYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIE-TKGSAVVCVAEGAGQS 408 (532)
Q Consensus 330 a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~-~kg~~VVVVAEGag~~ 408 (532)
++++|.| ++||+|||+|||+|||||++++||+| ||+|||||.||+++ .++++|+++++ +|+|+|||||||+++
T Consensus 153 i~~ta~s-~~rv~iVEvMGR~aG~lAl~a~lA~g-a~~iliPE~~~~~~---~i~~~i~~~~~~gk~~~iIvvaEG~~~- 226 (319)
T 1zxx_A 153 IRDTASS-HHRVFIVNVMGRNCGDIAMRVGVACG-ADAIVIPERPYDVE---EIANRLKQAQESGKDHGLVVVAEGVMT- 226 (319)
T ss_dssp HHHHHHH-TTCEEEEEECCTTCCHHHHHHHHHTT-CSEEECTTSCCCHH---HHHHHHHHHHHTTCCCEEEEEETTTCC-
T ss_pred HHHHHhc-CCCEEEEEeCCCCHHHHHHHHHHhcC-CCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCcCh-
Confidence 9999987 57999999999999999999999998 99999999999975 89999999985 799999999999852
Q ss_pred hhcccccccCCCCccccchHHHHHHHHHHHHHhcCcceeEEEeCCCceeccCCCCchhHHHHHHhhHHHHHhHhcCCccE
Q 009559 409 LIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHGAFAGFSGI 488 (532)
Q Consensus 409 l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~~~vk~idpgy~iRs~~p~a~D~i~c~~LG~~AV~~a~aG~Tg~ 488 (532)
+.+|+++|++++ | +++|+++|||+|||++|+++|++||++||..||+++++|++|+
T Consensus 227 -------------------~~~l~~~i~~~~---~--~~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~g~ 282 (319)
T 1zxx_A 227 -------------------ADQFMAELKKYG---D--FDVRANVLGHMQRGGTPTVSDRVLASKLGSEAVHLLLEGKGGL 282 (319)
T ss_dssp -------------------HHHHHHHHHHSS---C--CCEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHTTCCSE
T ss_pred -------------------HHHHHHHHHHhh---C--ceEEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCE
Confidence 457888877652 3 5899999999999999999999999999999999999999999
Q ss_pred EEEEECCeeEEechhhHhcCCCcCCCC
Q 009559 489 TVGLCNTHYAYFPIPEVISYPRAVDPN 515 (532)
Q Consensus 489 mVgi~n~~~~~vPi~ev~~~~k~vd~~ 515 (532)
||+++|++++++||+++++.+|.+|++
T Consensus 283 mv~~~~~~~~~~pl~~~~~~~k~~~~~ 309 (319)
T 1zxx_A 283 AVGIENGKVTSHDILDLFDESHRGDYD 309 (319)
T ss_dssp EEEEETTEEEEEEHHHHTTCCCCCCTH
T ss_pred EEEEECCEEEEEEHHHHHhcCCCCCHH
Confidence 999999999999999999999998653
No 4
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=100.00 E-value=2.9e-86 Score=680.33 Aligned_cols=301 Identities=29% Similarity=0.438 Sum_probs=282.2
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc---
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP--- 251 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~--- 251 (532)
.||||+||||||||||++||++|+++..+|+ +||||++||+||+++++ ++|+++.|++|+++|||+|||||+++
T Consensus 3 k~i~IltsGGdapGmNaair~vv~~a~~~g~-~v~Gi~~G~~GL~~~~~--~~l~~~~v~~i~~~GGt~LGssR~~~~~~ 79 (320)
T 1pfk_A 3 KKIGVLTSGGDAPGMNAAIRGVVRSALTEGL-EVMGIYDGYLGLYEDRM--VQLDRYSVSDMINRGGTFLGSARFPEFRD 79 (320)
T ss_dssp CEEEEEECSSCCTTHHHHHHHHHHHHHHTTC-EEEEESTHHHHHHTTCE--EEECSGGGTTCTTCCSCTTCCCCCGGGGS
T ss_pred CEEEEEccCCCchhHHHHHHHHHHHHHHCCC-EEEEEecChHHhcCCCE--EECCHHHHhhHHhCCCCeeccCCCCCCCC
Confidence 5999999999999999999999999988998 79999999999999987 56899999999999999999999875
Q ss_pred --cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHH
Q 009559 252 --TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINS 329 (532)
Q Consensus 252 --~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~ 329 (532)
..++++++|++++||+||+||||||+++|++|+++ +|+|||||||||||+++||+|||||||+++++++|++
T Consensus 80 ~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td~t~GfdTA~~~~~~aid~ 153 (320)
T 1pfk_A 80 ENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEM------GFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDR 153 (320)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEBCTTCCCTTCSCCBTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHhh------CCCEEEEeccccCCCCCCcCCCCHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999973 7999999999999999999999999999999999999
Q ss_pred HHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHh-ccCceEEEeeccccch
Q 009559 330 AYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIE-TKGSAVVCVAEGAGQS 408 (532)
Q Consensus 330 a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~-~kg~~VVVVAEGag~~ 408 (532)
++++|.|. +||+|||+|||+|||||++++||+| ||+|||||.||+++ .++++|+++++ +|+|+|||||||++
T Consensus 154 i~~ta~s~-~rv~iVEvMGR~aG~lAl~a~lA~g-a~~iliPE~~~~~~---~i~~~i~~~~~~gk~~~iIvvaEG~~-- 226 (320)
T 1pfk_A 154 LRDTSSSH-QRISVVEVMGRYCGDLTLAAAIAGG-CEFVVVPEVEFSRE---DLVNEIKAGIAKGKKHAIVAITEHMC-- 226 (320)
T ss_dssp HHHHHHHH-TCEEEEEECCTTCCHHHHHHHHHTT-CSEEECTTSCCCHH---HHHHHHHHHHHTTCSCEEEEEESSSS--
T ss_pred HHHHHhcC-CCEEEEEeCCcCHHHHHHHHHHhcC-CCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCcc--
Confidence 99999874 6999999999999999999999998 99999999999975 89999999985 79999999999984
Q ss_pred hhcccccccCCCCccccchHHHHHHHHHHHHHhcCcceeEEEeCCCceeccCCCCchhHHHHHHhhHHHHHhHhcCCccE
Q 009559 409 LIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHGAFAGFSGI 488 (532)
Q Consensus 409 l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~~~vk~idpgy~iRs~~p~a~D~i~c~~LG~~AV~~a~aG~Tg~ 488 (532)
.+.+|+++|++++ + +++|++.|||+|||++|+++|++||++||..||+++++|++|+
T Consensus 227 ------------------~~~~la~~i~~~~---~--~~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~g~ 283 (320)
T 1pfk_A 227 ------------------DVDELAHFIEKET---G--RETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGR 283 (320)
T ss_dssp ------------------CHHHHHHHHHHHH---S--SCEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHHTCCSE
T ss_pred ------------------hHHHHHHHHHHHh---C--CeEEEEcCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCE
Confidence 1567888888764 4 5789999999999999999999999999999999999999999
Q ss_pred EEEEECCeeEEechhhHh-cCCCcCCC
Q 009559 489 TVGLCNTHYAYFPIPEVI-SYPRAVDP 514 (532)
Q Consensus 489 mVgi~n~~~~~vPi~ev~-~~~k~vd~ 514 (532)
||+++|++++++||++++ +++|++|+
T Consensus 284 mv~~~~~~~~~~pl~~~~~~~~k~~~~ 310 (320)
T 1pfk_A 284 CVGIQNEQLVHHDIIDAIENMKRPFKG 310 (320)
T ss_dssp EEEEETTEEEEEEHHHHHHHCCCCCCH
T ss_pred EEEEECCEEEEEEHHHHHhhCCCCCCH
Confidence 999999999999999999 99998874
No 5
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=100.00 E-value=7.3e-86 Score=677.63 Aligned_cols=302 Identities=31% Similarity=0.448 Sum_probs=280.6
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc---
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP--- 251 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~--- 251 (532)
.|||||||||||||||++||++|+++..+|+ +||||++||+||+++++ ++|+++.|++|+++|||+|||||.++
T Consensus 2 krIgIltsGG~~pG~Na~ir~vv~~a~~~g~-~v~Gi~~G~~Gl~~~~~--~~l~~~~v~~i~~~GGt~lgtsR~~~~~~ 78 (319)
T 4a3s_A 2 KRIGVLTSGGDSPGMNAAVRAVVRKAIYHDV-EVYGIYNGYAGLISGKI--EKLELGSVGDIIHRGGTKLYTARCPEFKT 78 (319)
T ss_dssp CEEEEEEESSCCTTHHHHHHHHHHHHHHTTC-EEEEECSTTHHHHHCCE--EEECGGGGTTCTTCCSCTTCCCCCHHHHS
T ss_pred CEEEEECcCCCcHHHHHHHHHHHHHHHHCCC-EEEEEecchHHHcCCCe--ecCCHHHHHhHHhcCCCccccCCCCcccc
Confidence 4899999999999999999999999988998 79999999999999986 56899999999999999999999864
Q ss_pred --cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHH
Q 009559 252 --TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINS 329 (532)
Q Consensus 252 --~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~ 329 (532)
+.++++++|++++||+||+||||||+++|++|+++ +++||||||||||||++||+|||||||+++++++|++
T Consensus 79 ~e~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~l~~~------~i~vigiPkTIDNDl~~td~t~GfdTA~~~~~~ai~~ 152 (319)
T 4a3s_A 79 VEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH------GFPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDK 152 (319)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHHHHT------TCCEEEEEEETTCCCTTCSCCEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHhcc------CCcEEEeeccccCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999873 6899999999999999999999999999999999999
Q ss_pred HHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhc-cCceEEEeeccccch
Q 009559 330 AYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIET-KGSAVVCVAEGAGQS 408 (532)
Q Consensus 330 a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~-kg~~VVVVAEGag~~ 408 (532)
++.+|.| +++++|||+|||+|||||++++||++ +|+|||||.||+++ ++++.|++++++ ++|+|||||||+++.
T Consensus 153 i~~~a~s-~~rv~ivEvMGR~aG~lA~~a~la~g-a~~iliPE~~~~~~---~~~~~i~~~~~~g~~~~iivvaEG~~~~ 227 (319)
T 4a3s_A 153 IRDTATS-HERTYVIEVMGRHAGDIALWAGLAGG-AESILIPEADYDMH---EIIARLKRGHERGKKHSIIIVAEGVGSG 227 (319)
T ss_dssp HHHHHHH-HTCEEEEEECCTTCCHHHHHHHHHHT-CSEEEBTTBCCCHH---HHHHHHHHHHTTTCCCEEEEEETTTCCH
T ss_pred HHhhhhc-cCCeEEEEeCCcchhHHHHHHHhccC-CCEEEecCCCCCHH---HHHHHHHHHHHcCCCceEEEEECCCCcc
Confidence 9999976 67899999999999999999999998 99999999999976 899999998874 899999999999752
Q ss_pred hhcccccccCCCCccccchHHHHHHHHHHHHHhcCcceeEEEeCCCceeccCCCCchhHHHHHHhhHHHHHhHhcCCccE
Q 009559 409 LIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHGAFAGFSGI 488 (532)
Q Consensus 409 l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~~~vk~idpgy~iRs~~p~a~D~i~c~~LG~~AV~~a~aG~Tg~ 488 (532)
.++.+++++.+ | +++|+++|||+|||++|+++|+++|++||++||+++++|+||+
T Consensus 228 --------------------~~~~~~~~~~~---g--~~~r~~~lGh~qRgg~psa~Dr~~a~~lG~~AV~~~~~G~~g~ 282 (319)
T 4a3s_A 228 --------------------VEFGKRIEEET---N--LETRVSVLGHIQRGGSPSAADRVLASRLGAYAVELLLEGKGGR 282 (319)
T ss_dssp --------------------HHHHHHHHHHH---C--CCEEEEECGGGGGCSSCCHHHHHHHHHHHHHHHHHHTTTCCSE
T ss_pred --------------------hHHHHHHHHhC---C--ceEEEcchhHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCCCCe
Confidence 35666666654 4 4689999999999999999999999999999999999999999
Q ss_pred EEEEECCeeEEechhhHhcCCCcCCCC
Q 009559 489 TVGLCNTHYAYFPIPEVISYPRAVDPN 515 (532)
Q Consensus 489 mVgi~n~~~~~vPi~ev~~~~k~vd~~ 515 (532)
||+++|++++++||+++++.+|.||++
T Consensus 283 mv~~~~~~~~~~pl~~~~~~~k~v~~~ 309 (319)
T 4a3s_A 283 CVGIQNNKLVDHDIIEILETKHTVEQN 309 (319)
T ss_dssp EEEEETTEEEEEEHHHHSSSCCCCCHH
T ss_pred EEEEECCEEEEEeHHHHHhccCCCCHH
Confidence 999999999999999999999999864
No 6
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=100.00 E-value=2.9e-82 Score=689.98 Aligned_cols=360 Identities=22% Similarity=0.314 Sum_probs=307.3
Q ss_pred hhhcCCCcccccCCCCcEEEEEeCCCCcchHHHHHHHHHHHHH-HcCCceEEEEcccccccccCCceeecCCHHHHhhhh
Q 009559 159 VHRAGPREEIYFKPEEVKAAIVTCGGLCPGLNDVIRHIVITLE-IYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIH 237 (532)
Q Consensus 159 ~~~agpr~~i~f~p~~~kiaIvt~GG~cPGlNavIr~iv~~l~-~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~ 237 (532)
|.+++++.+ ..+.+||||+||||+|||||+|||++|+++. .++..+||||++||+||+++++ ++|+++.|++|+
T Consensus 60 ~~~~~~~~~---~~~~~~igIltsGGdaPGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~--~~L~~~~v~~i~ 134 (555)
T 2f48_A 60 FTEGESSLS---FSKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDK--IELTESLINSYR 134 (555)
T ss_dssp EEESCCCCS---CCSCCEEEEEEBSSCCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTCE--EEECHHHHHHHT
T ss_pred EecCCcccc---cCCCcEEEEECcCCCcHhHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCE--EECCHHHHHHHH
Confidence 455555421 3345899999999999999999999999974 4443489999999999999986 568999999999
Q ss_pred hcCC-cceecccCCc----cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCC--
Q 009559 238 LSGG-SLLGVSRGAP----TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLM-- 310 (532)
Q Consensus 238 ~~GG-SiLGTSR~~~----~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~t-- 310 (532)
++|| |+|||||++. +.++++++|++++||+||+||||||+++|++|++++++++++|+||||||||||||+++
T Consensus 135 ~~GGstiLGssR~~~~~~e~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTIDNDl~~t~i 214 (555)
T 2f48_A 135 NTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHI 214 (555)
T ss_dssp TCCSSTTTCCBCCCCCSHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCSSC
T ss_pred hCCCCcCCCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcC
Confidence 9999 7999999875 36799999999999999999999999999999999999999999999999999999876
Q ss_pred CccCChhhHHHHHHHHHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCC----CCCCC-hhHHHH
Q 009559 311 DKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESP----FNLHG-PNGVLR 385 (532)
Q Consensus 311 D~SfGFdTAv~~a~~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~p----f~leg-~~~ll~ 385 (532)
|+|||||||+++++++|++++.||.|++++|+|||||||+|||||+++|||++ ||+|||||+| +++++ .+.+++
T Consensus 215 d~tiGFdTA~~~~~~aId~i~~da~s~~~rv~iVEvMGR~aG~lAl~a~LA~g-ad~ilIPE~~~~~~~~L~~~~~~i~~ 293 (555)
T 2f48_A 215 EISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVKLMGRSASHVALECALKTH-PNICIVSEEVLAKKKTLSEIIDEMVS 293 (555)
T ss_dssp CCCEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCTTSCHHHHHHHHHHC-CSEECCHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHhhcC-CCEEEecCccccccCCHHHHHHHHHH
Confidence 99999999999999999999999999888899999999999999999999998 9999999986 45432 145556
Q ss_pred HHHHHH-hccCceEEEeeccccc------hhh---------------------------------------------ccc
Q 009559 386 HLKYLI-ETKGSAVVCVAEGAGQ------SLI---------------------------------------------KKT 413 (532)
Q Consensus 386 ~lk~~~-~~kg~~VVVVAEGag~------~l~---------------------------------------------~~~ 413 (532)
.|+++. ++++|+|||||||+.. +++ .+.
T Consensus 294 ~i~~r~~~gk~~~IIvVaEG~~~~~~~~~~li~el~~~l~~~~~~~~~l~~~~~~~~~~~~Ls~~~~~~~~~lp~~i~~~ 373 (555)
T 2f48_A 294 VILKRSLNGDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQFE 373 (555)
T ss_dssp HHHHHHHTTCCCEEEEEETTGGGTSHHHHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHSCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHcCCCcEEEEEeCCCccccchHHHHHHHHhhhhhcccccccccccccchhhhhhccchhhhhhhccchHHHHHH
Confidence 666554 4799999999999942 110 010
Q ss_pred -----ccccCCCCccccch--HHHHHHHHHHHHHhc-C-----cceeEEEeCCCceeccCCCCchhHHHHHHhhHHHHHh
Q 009559 414 -----NATDASGNIVLGDV--GVLIQQETKKYFKEI-G-----VPIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHG 480 (532)
Q Consensus 414 -----~~~DasGn~~l~dI--g~~L~~~I~~~f~~~-g-----~~~~vk~idpgy~iRs~~p~a~D~i~c~~LG~~AV~~ 480 (532)
..+|++||++|++| +.+|.+.|++++++. + ..++.|...|||+|||+.|+++|++||++||+.||++
T Consensus 374 l~~~~~~~D~~Gn~~l~~i~t~~~L~~~v~~~l~~~~~~~~~~~~~~~r~~~lGy~qRgg~PS~~Dr~la~~lG~~Av~~ 453 (555)
T 2f48_A 374 LIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKGSFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVL 453 (555)
T ss_dssp HHHHHHTCCTTCCCCCTTSCHHHHHHHHHHHHHHHHHTTTCCCSCCCEEEEEESHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred hhccccccCCCCCEeeccccHHHHHHHHHHHHHHHHhcccCcccceeeeeccCCcchhCCCCCHHHHHHHHHHHHHHHHH
Confidence 35799999999998 566666666665432 1 1367888889999999999999999999999999999
Q ss_pred HhcCCccEEEEEECCe-------eEEechhhHhcCC------------CcCCCCcHHHHHHHH
Q 009559 481 AFAGFSGITVGLCNTH-------YAYFPIPEVISYP------------RAVDPNSRMWHRCLT 524 (532)
Q Consensus 481 a~aG~Tg~mVgi~n~~-------~~~vPi~ev~~~~------------k~vd~~~~~w~~~l~ 524 (532)
+++|+||+||+++|++ +..+||.++++.+ +.||+++..|+.+.+
T Consensus 454 ~~~G~tG~mv~i~~~~~~~~~w~~~~vPl~~~~n~ek~~g~~~p~i~~~~Vdl~~~~f~~~~~ 516 (555)
T 2f48_A 454 ILNGLTGYMSCIKNLNLKPTDWIAGGVPLTMLMNMEERYGEKKPVIKKALVDLEGRPFKEFVK 516 (555)
T ss_dssp HHTTCCSEEEEEECTTSCGGGCEEEEEEGGGGEEEEEETTEEEEEECCCCCCTTSHHHHHHHH
T ss_pred HHcCCCCEEEEEECCCCCccceEEEeeeHHHHhhhhhhcCccccceeeeeeCCCCHHHHHHHH
Confidence 9999999999999976 8999999998643 679999998876543
No 7
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=2.2e-81 Score=701.48 Aligned_cols=335 Identities=25% Similarity=0.369 Sum_probs=306.5
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc--
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP-- 251 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~-- 251 (532)
..||||+||||||||||++||++|+++..+|+ +||||++||+||+++....++|+++.|++|+++|||+|||||+++
T Consensus 15 ~krIaIltsGGdaPGmNaaIravvr~a~~~g~-~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGTiLGSsR~~~f~ 93 (762)
T 3o8l_A 15 GKAIAVLTSGGDAQGMNAAVRAVVRVGIFTGA-RVFFVHEGYQGLVDGGDHIREATWESVSMMLQLGGTVIGSARCKDFR 93 (762)
T ss_dssp SCEEEEECCSSCCTTHHHHHHHHHHHHHHTTC-EEECCSTHHHHHHSCGGGCCBCCSGGGTTCTTCCSCSSCCCCCCGGG
T ss_pred CcEEEEEccCCCchhHhHHHHHHHHHHHHCCC-EEEEEecChhhhhcCCCcEEECCHHHHHhHHhCCCccccCCCCCccc
Confidence 46999999999999999999999999888888 799999999999998322367999999999999999999999885
Q ss_pred ---cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHH-----------------HHhcCCCceEeeeecccccCCCCCC
Q 009559 252 ---TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNE-----------------CRKRRMKVAVVGVPKTIDNDILLMD 311 (532)
Q Consensus 252 ---~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee-----------------~~kr~~~I~VIGIPKTIDNDI~~tD 311 (532)
..++++++|++++||+||+||||||+++|+.|++| +++++++++|||||||||||+++||
T Consensus 94 ~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDNDl~gTD 173 (762)
T 3o8l_A 94 EREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCGTD 173 (762)
T ss_dssp SHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCCCSSCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccCCCCCc
Confidence 35789999999999999999999999999988653 4567788999999999999999999
Q ss_pred ccCChhhHHHHHHHHHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHH
Q 009559 312 KTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLI 391 (532)
Q Consensus 312 ~SfGFdTAv~~a~~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~ 391 (532)
+|||||||+++++++|++++.+|.| ++|++|||||||+|||||++++||+| ||+|||||.||+++.++.+++.|+++.
T Consensus 174 ~TiGfdTA~~~i~eaid~i~~tA~S-h~Rv~iVEvMGR~aG~LAl~aglA~g-ad~ilIPE~p~~~~~~~~~~~~i~~~~ 251 (762)
T 3o8l_A 174 MTIGTDSALHRITEIVDAITTTAQS-HQRTFVLEVMGRHCGYLALVTSLSCG-ADWVFIPECPPDDNWEDHLCRRLSETR 251 (762)
T ss_dssp CCBTHHHHHHHHHHHHHHHHTTCCS-SCCEEEEEECCSSCCHHHHHHHHHHT-CSBCCCTTSCCCSSCHHHHHHHHHHHH
T ss_pred CCcCchhHHHHHHHHHHHHHHhhhc-CccEEEEEeCCcchhHHHHHHHHhcC-CCEEEecCCCCCcchHHHHHHHHHHHH
Confidence 9999999999999999999999986 67899999999999999999999998 999999999999988889999999876
Q ss_pred h-ccCceEEEeeccccchhhcccccccCCCCccccchHHHHHHHHHHHHHhcCcceeEEEeCCCceeccCCCCchhHHHH
Q 009559 392 E-TKGSAVVCVAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILC 470 (532)
Q Consensus 392 ~-~kg~~VVVVAEGag~~l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~~~vk~idpgy~iRs~~p~a~D~i~c 470 (532)
+ +++|+|||||||+. |++|++.. +.+|++.|++++ | +++|+..|||+|||+.|+++|+++|
T Consensus 252 ~~gk~~~iVvVaEGa~----------d~~G~~i~---~~~l~~~i~~~~---g--~~~R~tvLGh~QRgg~Psa~Dr~la 313 (762)
T 3o8l_A 252 TRGSRLNIIIVAEGAI----------DRNGKPIT---SEGVKDLVVRRL---G--YDTRVTVLGHVQRGGTPSAFDRILG 313 (762)
T ss_dssp HTTCSCCBBCEETTCC----------CSSSCCCC---HHHHHHHHHHHT---C--CCEEEECCCSSTTCSCCCHHHHHHH
T ss_pred HcCCCceEEEEeCCcc----------CCCCCCcH---HHHHHHHHHHHh---C--CCcceeecCccccCCCCChHHHHHH
Confidence 5 78899999999994 67788665 467888888774 4 4788999999999999999999999
Q ss_pred HHhhHHHHHhHhcCC---ccEEEEEECCeeEEechhhHhcCCCcCCC--CcHHHHHHHHhcCCC
Q 009559 471 TVLGQNAVHGAFAGF---SGITVGLCNTHYAYFPIPEVISYPRAVDP--NSRMWHRCLTSTGQP 529 (532)
Q Consensus 471 ~~LG~~AV~~a~aG~---Tg~mVgi~n~~~~~vPi~ev~~~~k~vd~--~~~~w~~~l~~tgQp 529 (532)
++||.+||+++++|+ +++||+++|++++++||.++++..|.|++ +.+.|.+.++.+||+
T Consensus 314 t~lG~~AV~~~~~g~~~~~~~~v~~~~~~i~~~Pl~e~~~~~k~v~~~~~~~~~~~a~~~rg~~ 377 (762)
T 3o8l_A 314 SRMGVEAVMALLEGTPDTPACVVSLSGNQAVRLPLMECVQVTKDVTKAMDEKRFDEAMKLRGRS 377 (762)
T ss_dssp HHHHHHHHHHHHTCCTTSCCEEEEEETTEEEEEEHHHHHHHHHHHHHHHHSSCHHHHHHHHCTH
T ss_pred HHHHHHHHHHHHcCCCCCceEEEEEECCEEEEEEHHHHHhccCCCChhhccchHHHHHHhhCch
Confidence 999999999999999 89999999999999999999999999987 567799999999974
No 8
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=4.9e-78 Score=674.52 Aligned_cols=328 Identities=21% Similarity=0.264 Sum_probs=289.5
Q ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc-
Q 009559 173 EEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP- 251 (532)
Q Consensus 173 ~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~- 251 (532)
+.+||||+||||||||||++||++|+++..+|+ +||||++||+||+++++ ++|+++.|++|+++|||+|||||+.+
T Consensus 399 ~~~~IgIltsGGdapGmNaaIravv~~~~~~g~-~v~Gi~~G~~GL~~~~~--~~l~~~~v~~i~~~GGt~LGTsR~~~~ 475 (762)
T 3o8l_A 399 GSYTVAVMNVGAPAAGMNAAVRSTVRIGLIQGN-RVLVVHDGFEGPAKGQI--EEAGWSYVGGWTGQGGSKLGSKRTLPK 475 (762)
T ss_dssp SCCEEEEEEESSCCTTHHHHHHHHHHHHHHHTC-EEEEESSTTHHHHHTCE--EECCTTTTSSCTTCCSCSSCEECCCSG
T ss_pred cCCEEEEEecCCCcHHHHHHHHHHHHHHHHCCC-EEEEEeccccccccCCE--EECCHHHhhhHHhCCCceeecCCCCcH
Confidence 468999999999999999999999999988898 79999999999999986 56899999999999999999999875
Q ss_pred -cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcC-CCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHH
Q 009559 252 -TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRR-MKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINS 329 (532)
Q Consensus 252 -~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~-~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~ 329 (532)
+.++++++|++++||+||+||||||+++|++|++++++.. ++|+||||||||||||++||+|||||||+++++++|++
T Consensus 476 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~TiGfdTA~~~~~~aid~ 555 (762)
T 3o8l_A 476 KSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALNTICTTCDR 555 (762)
T ss_dssp GGHHHHHHHHHHTTCCCEEEEESHHHHHHHHHHHHHHHHCSTTCSCEEEEEBCTTCCCTTCSCCBTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhccccCCCEEeeccccCCCCCCCcCCCChHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999887754 68999999999999999999999999999999999999
Q ss_pred HHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHh-ccCceEEEeeccccch
Q 009559 330 AYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIE-TKGSAVVCVAEGAGQS 408 (532)
Q Consensus 330 a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~-~kg~~VVVVAEGag~~ 408 (532)
++++|.|+++||+|||||||+|||||++++||+| ||+|||||.||+++...+.++++.++++ +++++|||||||+...
T Consensus 556 i~~tA~ssh~rv~vVEvMGR~aG~lAl~aglA~g-ad~ilIPE~~~~l~~~~~~i~~~~~r~~~~~~~~iVvvaEga~~~ 634 (762)
T 3o8l_A 556 IKQSAAGTKRRVFIIETMGGYCGYLATMAGLAAG-ADAAYIFEEPFTIRDLQANVEHLVQKMKTTVKRGLVLRNEKCNEN 634 (762)
T ss_dssp HTTTTCSSSCEEEEEEECSTTCCHHHHHHHHHTT-CSEEECSSSCCCHHHHHHHHHHHHHHHTSSCSEEEEEEETTSCSS
T ss_pred HHHHHHhCCCcEEEEEeCCcchhHHHHHHHHhhC-CCEEEECCCCCCHHHHHHHHHHHHHHHhcCCCceEEEEECCCCcc
Confidence 9999988889999999999999999999999998 9999999999998743334455555554 5678999999999642
Q ss_pred hhcccccccCCCCccccchHHHHHHHHHHHHHhcCcceeEEEeCCCceeccCCCCchhHHHHHHhhHHHHHhHhcC----
Q 009559 409 LIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHGAFAG---- 484 (532)
Q Consensus 409 l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~~~vk~idpgy~iRs~~p~a~D~i~c~~LG~~AV~~a~aG---- 484 (532)
+. ..++++.+++. ....+++|+..|||+|||+.|+++||++|++||..||+++++|
T Consensus 635 ~~-----------------~~~~~~~~~~~---~~~~~d~R~tvLGH~QRGG~Pta~DRilatr~g~~Av~~l~~g~~~~ 694 (762)
T 3o8l_A 635 YT-----------------TDFIFNLYSEE---GKGIFDSRKNVLGHMQQGGSPTPFDRNFATKMGAKAMNWMAGKIKES 694 (762)
T ss_dssp SC-----------------HHHHHHHHHHH---TTTTCEEEEEECCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ch-----------------HHHHHHHHHhh---ccCCceEEEeeCchhhCCCCCCHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 21 23455555433 1224689999999999999999999999999999999999987
Q ss_pred -----------CccEEEEEECCeeEEechhhHhcCC--CcCCCCcHHHHHHHH
Q 009559 485 -----------FSGITVGLCNTHYAYFPIPEVISYP--RAVDPNSRMWHRCLT 524 (532)
Q Consensus 485 -----------~Tg~mVgi~n~~~~~vPi~ev~~~~--k~vd~~~~~w~~~l~ 524 (532)
.+++|||+++++++++||+++..+. +...|+..||..+..
T Consensus 695 ~~~g~~~~~~~~~~~~vg~~~~~i~~~pl~e~~~~~d~~~r~~~~~~w~~~~~ 747 (762)
T 3o8l_A 695 YRNGRIFANTPDSGCVLGMRKRALVFQPVTELQNQTDFEHRIPKEQWWLKLRP 747 (762)
T ss_dssp BCSSSBCCCSSTTEEEEEEETTEEEEEEHHHHGGGEETTTTEESSCGGGGTHH
T ss_pred ccccccccccCCceEEEEEECCEEEEEEHHHHhhccchhhcCCCCchHHhHHH
Confidence 7999999999999999999998743 344578899987654
No 9
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-78 Score=674.38 Aligned_cols=333 Identities=24% Similarity=0.340 Sum_probs=286.4
Q ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCcc
Q 009559 173 EEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPT 252 (532)
Q Consensus 173 ~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~ 252 (532)
+.+||||+||||||||||+|||++|+++..+|+ +||||++||+||++++....+|+++.|++|+++|||+|||||+++.
T Consensus 4 ~~krIgIltsGGdaPGmNaaIravvr~a~~~g~-~V~Gi~~G~~GL~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~~f 82 (787)
T 3o8o_A 4 KKKKIAVMTSGGDSPGMNAAVRAVVRTGIHFGC-DVFAVYEGYEGLLRGGKYLKKMAWEDVRGWLSEGGTLIGTARSMEF 82 (787)
T ss_dssp -CCEEEEEEESSCCTTHHHHHHHHHHHHHHTTC-EEEEETTHHHHHHHCTTSEEECCGGGGTTGGGCCSCTTCCCCCSGG
T ss_pred CCcEEEEEeeCCCchhHHHHHHHHHHHHHHCCC-EEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCceeccCCCCcc
Confidence 357999999999999999999999999999998 7999999999999984223579999999999999999999998753
Q ss_pred -----HHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHH-----------------HHhcCCCceEeeeecccccCCCCC
Q 009559 253 -----VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNE-----------------CRKRRMKVAVVGVPKTIDNDILLM 310 (532)
Q Consensus 253 -----~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee-----------------~~kr~~~I~VIGIPKTIDNDI~~t 310 (532)
..+++++|++++||+||+||||||+++|++|++| +++++.+++|||||||||||+++|
T Consensus 83 ~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPkTIDNDl~gT 162 (787)
T 3o8o_A 83 RKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSGT 162 (787)
T ss_dssp GSHHHHHHHHHHHHHHTEEEEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEEESSCCCTTS
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEeecCcCCCCCC
Confidence 4679999999999999999999999999987642 334567899999999999999999
Q ss_pred CccCChhhHHHHHHHHHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCCh-hHHHHHHHH
Q 009559 311 DKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGP-NGVLRHLKY 389 (532)
Q Consensus 311 D~SfGFdTAv~~a~~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~-~~ll~~lk~ 389 (532)
|+|||||||+++++++|++++.+|.| ++|++|||||||+|||||++++||+| ||+|||||.||++++. +.+++.+++
T Consensus 163 D~TiGfdTAl~~i~eaid~i~~tA~S-h~RvfvVEVMGR~aG~LAl~agLA~g-Ad~ilIPE~p~~~~~~~~~v~~~i~~ 240 (787)
T 3o8o_A 163 DSTIGAYSALERICEMVDYIDATAKS-HSRAFVVEVMGRHCGWLALMAGIATG-ADYIFIPERAVPHGKWQDELKEVCQR 240 (787)
T ss_dssp SCCEEHHHHHHHHHHHHHHHHHHHHH-TTCEEEEEECCTTCCHHHHHHHHHTT-CSEEECGGGCBCTTTHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHhhhhc-cCceEEEEcCCcchhHHHHHHHHhhC-CCEEEeCCCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999987 78899999999999999999999998 9999999999999853 345555655
Q ss_pred HH-hccCceEEEeeccccchhhcccccccCCCCccccchHHHHHHHHHHHHHhcCcceeEEEeCCCceeccCCCCchhHH
Q 009559 390 LI-ETKGSAVVCVAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGI 468 (532)
Q Consensus 390 ~~-~~kg~~VVVVAEGag~~l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~~~vk~idpgy~iRs~~p~a~D~i 468 (532)
+. ++|+|+|||||||+.+.. |+.. .+..+++.|++ + | +++|...|||+|||++|+++||+
T Consensus 241 ~~~~gk~~~IVvVaEGa~~~~----------~~~~---~~~~~~~~i~~-~---g--~~~R~tvLGh~QRGG~Psa~DRi 301 (787)
T 3o8o_A 241 HRSKGRRNNTIIVAEGALDDQ----------LNPV---TANDVKDALIE-L---G--LDTKVTILGHVQRGGTAVAHDRW 301 (787)
T ss_dssp HHHTTCCCEEEEEETTCBBTT----------SCBC---CHHHHHHHHHH-H---T--CCEEEEECGGGGTCSCCCHHHHH
T ss_pred HHhcCCCceEEEEeCCCcccc----------Ccch---hHHHHHHHHHH-h---C--CcceeeccCHhhcCCCCChHHHH
Confidence 44 368899999999997532 2221 13455665555 2 5 47888899999999999999999
Q ss_pred HHHHhhHHHHHhHhcCCc---cEEEEEECCeeEEechhhHhcCCCcCC--CCcHHHHHHHHhcC
Q 009559 469 LCTVLGQNAVHGAFAGFS---GITVGLCNTHYAYFPIPEVISYPRAVD--PNSRMWHRCLTSTG 527 (532)
Q Consensus 469 ~c~~LG~~AV~~a~aG~T---g~mVgi~n~~~~~vPi~ev~~~~k~vd--~~~~~w~~~l~~tg 527 (532)
+|++||..||+++++|.+ |+|||+++++++++||.+++.+.|.|+ .+...|...++.-|
T Consensus 302 lAtrlG~~AV~~l~~g~~~~~~~mVg~~~~~i~~~pl~~~~~~~k~v~~~~~~~~~~~a~~lr~ 365 (787)
T 3o8o_A 302 LATLQGVDAVKAVLEFTPETPSPLIGILENKIIRMPLVESVKLTKSVATAIENKDFDKAISLRD 365 (787)
T ss_dssp HHHHHHHHHHHHHHTCCSSCCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhhcCCHHHHHhccC
Confidence 999999999999999997 799999999999999999998777766 44555666665543
No 10
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-77 Score=668.74 Aligned_cols=318 Identities=25% Similarity=0.326 Sum_probs=278.4
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCce-eecCCHHHHhhhhhcCCcceecccCCcc
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELT-EMPLSRKVVQNIHLSGGSLLGVSRGAPT 252 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~-~i~Lt~~~V~~i~~~GGSiLGTSR~~~~ 252 (532)
.+||||+||||||||||++||++|+++..+|+ +||||++||+||++++.. ..+|+++.|++|+++|||+|||||+++.
T Consensus 3 ~krIgIltsGGdapGmNaaIravvr~a~~~g~-~V~Gi~~G~~GL~~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~~~ 81 (766)
T 3o8o_B 3 QKAIAVMTSGGDAPGMNSNVRAIVRSAIFKGC-RAFVVMEGYEGLVRGGPEYIKEFHWEDVRGWSAEGGTNIGTARCMEF 81 (766)
T ss_dssp CCEEEEEEESSCCTTHHHHHHHHHHHHHHHTC-EEEEETTHHHHHHSCSTTTEEEECGGGGTTGGGCCSCTTCCCCCSGG
T ss_pred CcEEEEEeeCCCchhHHHHHHHHHHHHHHCCC-EEEEEeCChHHHhcCCcccEEECCHHHHhhHHhCCCceeccCCCCcc
Confidence 57999999999999999999999999988998 799999999999998621 2468999999999999999999998762
Q ss_pred -----HHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHH-----------------HHhcCCCceEeeeecccccCCCCC
Q 009559 253 -----VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNE-----------------CRKRRMKVAVVGVPKTIDNDILLM 310 (532)
Q Consensus 253 -----~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee-----------------~~kr~~~I~VIGIPKTIDNDI~~t 310 (532)
..+++++|++++||+||+||||||+++|++|++| +++++.+++|||||||||||+++|
T Consensus 82 ~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPkTIDNDl~gT 161 (766)
T 3o8o_B 82 KKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMSTT 161 (766)
T ss_dssp GSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEBCTTCCCTTC
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEeccccCCCCCC
Confidence 4678999999999999999999999999988653 455677899999999999999999
Q ss_pred CccCChhhHHHHHHHHHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCCh-hHHHHHHHH
Q 009559 311 DKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGP-NGVLRHLKY 389 (532)
Q Consensus 311 D~SfGFdTAv~~a~~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~-~~ll~~lk~ 389 (532)
|+|||||||+++++++|++++.+|.| ++|++|||||||+|||||++++||+| ||+|||||.||++++. +.+++.+++
T Consensus 162 D~TiGfdTA~~~i~eaid~i~~tA~S-h~RvfvVEvMGR~aG~LAl~aglA~g-Ad~ilIPE~p~~~~~~~~~v~~~i~~ 239 (766)
T 3o8o_B 162 DATIGAYSALDRICKAIDYVEATANS-HSRAFVVEVMGRNCGWLALLAGIATS-ADYIFIPEKPATSSEWQDQMCDIVSK 239 (766)
T ss_dssp SCCBTHHHHHHHHHHHHHHHHHHHHH-TTCEEEEEECCTTCCHHHHHHHHHHT-CSEEECTTCCCCTTHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHhhhhc-cCceEEEEcCCcchhHHHHHHHHhcC-CCEEEccCCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999986 67899999999999999999999998 9999999999999732 344455554
Q ss_pred HH-hccCceEEEeeccccchhhcccccccCCCCccccchHHHHHHHHHHHHHhcCcceeEEEeCCCceeccCCCCchhHH
Q 009559 390 LI-ETKGSAVVCVAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGI 468 (532)
Q Consensus 390 ~~-~~kg~~VVVVAEGag~~l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~~~vk~idpgy~iRs~~p~a~D~i 468 (532)
+. ++|+|+|||||||+.+.. |+.. .+.+|++.|++++ | +++|+..|||+|||+.|+++||+
T Consensus 240 ~~~~gk~~~IVvVaEGa~~~~----------~~~~---~~~~l~~~i~~~~---g--~~~R~tvLGh~QRGG~Psa~DR~ 301 (766)
T 3o8o_B 240 HRSRGKRTTIVVVAEGAIAAD----------LTPI---SPSDVHKVLVDRL---G--LDTRITTLGHVQRGGTAVAYDRI 301 (766)
T ss_dssp HHHTTCCCEEEEEETTCBCTT----------SCBC---CHHHHHHHHHHTT---C--CCEEEEECGGGGTCSCCCHHHHH
T ss_pred HHhcCCCceEEEEeCCccccc----------CCcc---hHHHHHHHHHHHh---C--CceeEcccChhhcCCCCChhhHH
Confidence 43 367899999999997532 2221 1456777776653 4 57999999999999999999999
Q ss_pred HHHHhhHHHHHhHhcCCc---cEEEEEECCeeEEechhhHhcCCCcC
Q 009559 469 LCTVLGQNAVHGAFAGFS---GITVGLCNTHYAYFPIPEVISYPRAV 512 (532)
Q Consensus 469 ~c~~LG~~AV~~a~aG~T---g~mVgi~n~~~~~vPi~ev~~~~k~v 512 (532)
+|++||..||+++++|.+ |+|||+++++++++||.+++...|.|
T Consensus 302 lAt~~G~~AV~~~~~g~~~~~~~mv~~~~~~i~~~pl~~~~~~~k~v 348 (766)
T 3o8o_B 302 LATLQGLEAVNAVLESTPDTPSPLIAVNENKIVRKPLMESVKLTKAV 348 (766)
T ss_dssp HHHHHHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCcc
Confidence 999999999999999997 89999999999999999998765544
No 11
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=1.2e-77 Score=677.79 Aligned_cols=332 Identities=24% Similarity=0.341 Sum_probs=283.9
Q ss_pred CCCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc
Q 009559 172 PEEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP 251 (532)
Q Consensus 172 p~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~ 251 (532)
...+||||+||||||||||+|||++|+++..||+ +||||++||+||++++....+|+++.|++|+++|||+|||||+++
T Consensus 208 ~~~krIaIlTSGGdaPGmNAaIRaVVr~a~~~G~-~V~Gi~~Gy~GLl~g~~~i~~L~~~~V~~i~~~GGTiLGTsR~~~ 286 (989)
T 3opy_A 208 EGKKKIAIITSGGDAPGMNAAVRAVTRAGIFYGC-KVYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGGTIIGTARCKE 286 (989)
T ss_dssp CCSEEEEEEECSSCCTTHHHHHHHHHHHHHHTTE-EEEEECTHHHHHHSCSTTEEEECTTTTTTGGGCCSCSSCCCCSSS
T ss_pred ccCCEEEEEeeCCCchhHHHHHHHHHHHHHHCCC-EEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCccccCCCCCc
Confidence 3457999999999999999999999999989998 799999999999998522356899999999999999999999875
Q ss_pred -----cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHH-----------------HHhcCCCceEeeeecccccCCCC
Q 009559 252 -----TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNE-----------------CRKRRMKVAVVGVPKTIDNDILL 309 (532)
Q Consensus 252 -----~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee-----------------~~kr~~~I~VIGIPKTIDNDI~~ 309 (532)
..++++++|++++||+||+||||||+++|++|++| ..+++.+++||||||||||||++
T Consensus 287 f~~~e~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPkTIDNDl~g 366 (989)
T 3opy_A 287 FRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCG 366 (989)
T ss_dssp TTSHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCCTT
T ss_pred ccchhHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEeecccCCCCC
Confidence 35789999999999999999999999999998754 23345789999999999999999
Q ss_pred CCccCChhhHHHHHHHHHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChh-HHHHHHH
Q 009559 310 MDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPN-GVLRHLK 388 (532)
Q Consensus 310 tD~SfGFdTAv~~a~~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~-~ll~~lk 388 (532)
||+|||||||+++++++|++++.+|.| ++|++|||||||+|||||++++||+| ||+|||||.||++++.. .+.+.++
T Consensus 367 TD~TiGFdTAl~~i~eaId~I~~TA~S-h~RvfVVEVMGR~aG~LAl~agLA~G-Ad~IlIPE~pf~l~~~~~~l~~~i~ 444 (989)
T 3opy_A 367 TDSTIGAYSSLERIIELVDYIDATAAS-HSRAFVVEVMGRHCGWLGLMSGIATG-ADYIFIPERPPSESNWKDDLKKVCL 444 (989)
T ss_dssp CSCCEEHHHHHHHHHHHHHHHHSSCCC-TTEEEEEECCCSSCTHHHHHHHHHHT-CSEEECTTSCCCTTTHHHHHHHHHH
T ss_pred CCCCCChhhHHHHHHHHHHHHHhhhhc-cCceEEEEcCCCchhHHHHHHHHhcC-CCEEEeCCCCCChHHHHHHHHHHHH
Confidence 999999999999999999999999976 78999999999999999999999998 99999999999998543 3444444
Q ss_pred HHH-hccCceEEEeeccccchhhcccccccCCCCccccchHHHHHHHHHHHHHhcCcceeEEEeCCCceeccCCCCchhH
Q 009559 389 YLI-ETKGSAVVCVAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDG 467 (532)
Q Consensus 389 ~~~-~~kg~~VVVVAEGag~~l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~~~vk~idpgy~iRs~~p~a~D~ 467 (532)
++. ++++|+|||||||+.+.. |+... ...+++.|+ +.| +++|...|||+|||++|+++||
T Consensus 445 k~~~~Gk~~~IVVVAEGa~~~~----------~~~i~---~~~l~~~l~----~~G--~dtR~tvLGHiQRGG~Psa~DR 505 (989)
T 3opy_A 445 RHREKGRRKTTVIVAEGAIDDQ----------LNPIT---SEEVKDVLV----EIG--LDTRITRLGHVQRGGAPCAFDR 505 (989)
T ss_dssp HHHHTTCCEEEEEECTTCBCTT----------SCBCC---HHHHHHHHH----TTT--CEEEEEECGGGGGCSCCCHHHH
T ss_pred HHHhcCCCceEEEEeCCccccc----------cccch---HHHHHHHHH----HhC--cchhhhhhhHHHcCCCCChhhH
Confidence 443 357899999999997532 22111 234444443 345 5788889999999999999999
Q ss_pred HHHHHhhHHHHHhHhcCCc---cEEEEEECCeeEEechhhHhcCCCcCC--CCcHHHHHHHHh
Q 009559 468 ILCTVLGQNAVHGAFAGFS---GITVGLCNTHYAYFPIPEVISYPRAVD--PNSRMWHRCLTS 525 (532)
Q Consensus 468 i~c~~LG~~AV~~a~aG~T---g~mVgi~n~~~~~vPi~ev~~~~k~vd--~~~~~w~~~l~~ 525 (532)
+||++||.+||+++++|.+ |+|||++|++++++||.+++.+.|.|+ .+...|...++.
T Consensus 506 ilAtrlG~~AV~~l~~g~~~~~g~mVgl~~~~iv~vPl~e~v~~~k~V~~a~~~k~f~~a~~l 568 (989)
T 3opy_A 506 FLATVQGVDAVRAVLESTPAIPSPVISILENKIVRQPLVESVAQTKTVSAAIEAKDFDKALQL 568 (989)
T ss_dssp HHHHHHHHHHHHHHHTCCTTSCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhhccCHHHHHhc
Confidence 9999999999999999985 899999999999999999998877765 344556665554
No 12
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=8.6e-77 Score=672.20 Aligned_cols=318 Identities=24% Similarity=0.321 Sum_probs=279.4
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCce-eecCCHHHHhhhhhcCCcceecccCCcc
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELT-EMPLSRKVVQNIHLSGGSLLGVSRGAPT 252 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~-~i~Lt~~~V~~i~~~GGSiLGTSR~~~~ 252 (532)
.+||||+||||||||||+|||++|+++..+|+ +||||++||+||++++.. ..+|+++.|++|+++|||+|||||+++.
T Consensus 181 ~krIgIlTsGGdaPGmNAaIRaVVr~a~~~g~-~V~Gi~~Gy~GLl~g~~~~i~~l~~~~V~~i~~~GGTiLGSsR~~~f 259 (941)
T 3opy_B 181 RKTIGVMTSGGDSPGMNPFVRAVVRAGIYKGC-KVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGTNIGTARCKEF 259 (941)
T ss_dssp CCCEEEEECSSCCTTHHHHHHHHHHHHHHTTC-CEEEETTHHHHHHHCSTTTEEEECGGGGTTTTTCCSCSSCCCCCSGG
T ss_pred CCEEEEEeeCcCchhHHHHHHHHHHHHHHCCC-EEEEEeCChHHhccCCcceEEECCHHHHHhHHhCCCceeccCCCCcc
Confidence 57999999999999999999999999999999 699999999999998621 2468999999999999999999998763
Q ss_pred -----HHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHH-----------------HHHhcCCCceEeeeecccccCCCCC
Q 009559 253 -----VSEIVDSMEERGINMLFVLGGNGTHAGANAIHN-----------------ECRKRRMKVAVVGVPKTIDNDILLM 310 (532)
Q Consensus 253 -----~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~e-----------------e~~kr~~~I~VIGIPKTIDNDI~~t 310 (532)
..+++++|++++||+||+||||||+++|++|++ ++++++.+++|||||||||||+++|
T Consensus 260 ~~~~~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPkTIDNDl~gT 339 (941)
T 3opy_B 260 RERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSST 339 (941)
T ss_dssp GSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCCCSSC
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEeecccCCCCCC
Confidence 457899999999999999999999999988754 4566778899999999999999999
Q ss_pred CccCChhhHHHHHHHHHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCCh-hHHHHHHHH
Q 009559 311 DKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGP-NGVLRHLKY 389 (532)
Q Consensus 311 D~SfGFdTAv~~a~~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~-~~ll~~lk~ 389 (532)
|+|||||||+++++++|++++.+|.| ++|++|||||||+|||||++++||+| ||+|||||.||++++. +.+++.+++
T Consensus 340 D~TiGfdTAv~~i~eaId~I~~tA~S-h~RvfvVEVMGR~aG~LAl~agLA~G-Ad~IlIPE~p~~~~~~~~~v~~~i~~ 417 (941)
T 3opy_B 340 DATIGAFSSLDRICRAIDYIDATANS-HSRAFIVEVMGRHCGWLGLLAGLATS-ADYILIPEKPASSREWQDQMCDIVGK 417 (941)
T ss_dssp SSCEEHHHHHHHHHHHHHHHHSCC-C-CSEEEEEECCCSSCCHHHHHHHHHTT-CSEEECTTSCCCSSCHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHhhhhc-cCceEEEEcCCCcccHHHHHHHHhcC-CCEEEECCCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999976 68899999999999999999999998 9999999999999853 456666665
Q ss_pred HH-hccCceEEEeeccccchhhcccccccCCCCccccchHHHHHHHHHHHHHhcCcceeEEEeCCCceeccCCCCchhHH
Q 009559 390 LI-ETKGSAVVCVAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGI 468 (532)
Q Consensus 390 ~~-~~kg~~VVVVAEGag~~l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~~~vk~idpgy~iRs~~p~a~D~i 468 (532)
+. ++|+|+|||||||+.+. .|+.. .+..+++.|++. .| +++|+..|||+|||++|+++||+
T Consensus 418 ~~~~gk~~~IVVVAEGa~~~----------~~~~i---~~~~l~~~i~~~---~g--~d~R~tvLGhiQRGG~Psa~DRi 479 (941)
T 3opy_B 418 HRARGKRKTIVIVAEGAISN----------DLSPI---SCDQVKDVLVNR---LG--LDTRVTTLGHVQRGGTAVAFDRI 479 (941)
T ss_dssp HHHHTCCCEEEEECTTCBCT----------TCCBC---CHHHHHHHHHHT---SC--CEEEEEECGGGGTCSCCCHHHHH
T ss_pred HHhcCCCcEEEEEeCCcccc----------cCCcc---hHHHHHHHHHHH---hC--CceeecccChhhcCCCCChhhHH
Confidence 44 47899999999999743 22221 145667766654 35 57899999999999999999999
Q ss_pred HHHHhhHHHHHhHhcCCc---cEEEEEECCeeEEechhhHhcCCCcC
Q 009559 469 LCTVLGQNAVHGAFAGFS---GITVGLCNTHYAYFPIPEVISYPRAV 512 (532)
Q Consensus 469 ~c~~LG~~AV~~a~aG~T---g~mVgi~n~~~~~vPi~ev~~~~k~v 512 (532)
+|++||..||+++++|.+ |+|||+++++++++||.+++.+.|.|
T Consensus 480 lAtrlG~~AV~~l~~g~~~~~g~mVg~~~~~iv~~Pl~e~v~~~k~v 526 (941)
T 3opy_B 480 YATLQGVEAVNAVLECDADTPSPMIAIKEDQITRVPLVDAVELTQQV 526 (941)
T ss_dssp HHHHHHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCCc
Confidence 999999999999999997 79999999999999999998765544
No 13
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-76 Score=659.03 Aligned_cols=325 Identities=20% Similarity=0.271 Sum_probs=288.1
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEccccccccc-CCceeecCCHHHHhhhhhcCCcceecccCCc-
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCD-KELTEMPLSRKVVQNIHLSGGSLLGVSRGAP- 251 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~-~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~- 251 (532)
.+||||+||||||||||++||++|+++..+|+ +||||++||+||++ +++ .+|+++.|++|+++|||+|||||+.+
T Consensus 393 ~~~IgIltsGGdapGmNaaIravv~~a~~~g~-~v~Gi~~G~~GL~~~~~~--~~l~~~~v~~i~~~GGt~LGTsR~~~~ 469 (766)
T 3o8o_B 393 RLKIAIVNVGAPAGGINSAVYSMATYCMSQGH-RPYAIYNGWSGLARHESV--RSLNWKDMLGWQSRGGSEIGTNRVTPE 469 (766)
T ss_dssp CCEEEEEEESSCCTTHHHHHHHHHHHHHHHTC-EEEEETTHHHHHHHHCCE--EECCGGGGTTGGGCCSCTTCCCCCCGG
T ss_pred CcEEEEEecCCCcHHHHHHHHHHHHHHHHCCC-EEEEEecChHhhCCCCce--EECCHHHHhhHhhCCCceEccCCCCCc
Confidence 47999999999999999999999999988998 79999999999997 443 56999999999999999999999865
Q ss_pred --cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhc-CCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHH
Q 009559 252 --TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKR-RMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAIN 328 (532)
Q Consensus 252 --~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr-~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~ 328 (532)
+.++++++|++++||+||+||||||+++|++|+++.++. .++|+||||||||||||++||+|||||||+++++++|+
T Consensus 470 ~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~T~GfdTA~~~~~~aid 549 (766)
T 3o8o_B 470 EADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSNNVPGTEYSLGSDTALNALMEYCD 549 (766)
T ss_dssp GGCHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHTTTTTCGGGCSCCCEEEBCTTCCCSSCSCCBTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeccccccCCCCCCCCCChhHHHHHHHHHHH
Confidence 578999999999999999999999999999998754332 25799999999999999999999999999999999999
Q ss_pred HHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHh--------ccCceEEE
Q 009559 329 SAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIE--------TKGSAVVC 400 (532)
Q Consensus 329 ~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~--------~kg~~VVV 400 (532)
+++++|.|+++||+|||+|||+|||||++++||+| ||+|||||.||+++ .+++.|+++.+ .+.+.+|+
T Consensus 550 ~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~g-a~~ilIPE~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~iiv 625 (766)
T 3o8o_B 550 VVKQSASSTRGRAFVVDCQGGNSGYLATYASLAVG-AQVSYVPEEGISLE---QLSEDIEYLAQSFEKAEGRGRFGKLIL 625 (766)
T ss_dssp HHHHHHHHHSSEEEEEEECCTTCCHHHHHHHHHHT-CSEEECTTTCCCHH---HHHHHHHHHHHHHHHHTTCTTCCEEEE
T ss_pred HHHHHhhccCCcEEEEEeCCCchhHHHHHHHHhhC-CCEEEeCCCCCCHH---HHHHHHHHHHHHHhhhhccCCCceEEE
Confidence 99999988889999999999999999999999998 99999999999987 67777764322 24668999
Q ss_pred eeccccchhhcccccccCCCCccccchHHHHHHHHHHHHHhcCcceeEEEeCCCceeccCCCCchhHHHHHHhhHHHHHh
Q 009559 401 VAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHG 480 (532)
Q Consensus 401 VAEGag~~l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~~~vk~idpgy~iRs~~p~a~D~i~c~~LG~~AV~~ 480 (532)
|+||+...+ .+.+|++.|++++ +..+++|+..|||+|||+.|+++||++|++||..||++
T Consensus 626 vaEg~~~~~-----------------~~~~la~~i~~~~---~~~~e~R~tvLGhiQRGG~Ps~~DR~lAtr~G~~Av~~ 685 (766)
T 3o8o_B 626 KSTNASKAL-----------------SATKLAEVITAEA---DGRFDAKPAYPGHVQQGGLPSPIDRTRATRMAIKAVGF 685 (766)
T ss_dssp EEGGGCSSC-----------------CHHHHHHHHHHHH---TTSCEEEEEBCGGGGGCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EeCCcCCCC-----------------cHHHHHHHHHHHh---CCCceEEEecccccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 999985321 1567888887764 22468999999999999999999999999999999999
Q ss_pred HhcCC----------------------ccEEEEEECCeeEEechhhHhcC-C--CcCCCCcHHHHHHHHh
Q 009559 481 AFAGF----------------------SGITVGLCNTHYAYFPIPEVISY-P--RAVDPNSRMWHRCLTS 525 (532)
Q Consensus 481 a~aG~----------------------Tg~mVgi~n~~~~~vPi~ev~~~-~--k~vd~~~~~w~~~l~~ 525 (532)
+++|. +++|||+++++++++||+++.+. . +...|+..||..+...
T Consensus 686 l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~i~~~pi~~~~~~~~d~~~r~~~~~~w~~~~~~ 755 (766)
T 3o8o_B 686 IKDNQAAIAEARAAEENFNADDKTISDTAAVVGVKGSHVVYNSIRQLYDYETEVSMRMPKVIHWQATRLI 755 (766)
T ss_dssp HHHTSHHHHHHSSSSSTTCCCCHHHHTTSEEEECSSSCCEEEEHHHHHHHTBCGGGSSBSSCSCHHHHHH
T ss_pred HHhCCcccccccccccccccccccCCCceEEEEEECCEEEEEeHHHHHhhccchhhCCCCChhHHhHHHH
Confidence 99999 89999999999999999998742 2 5566788999987654
No 14
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-75 Score=656.11 Aligned_cols=325 Identities=17% Similarity=0.233 Sum_probs=288.0
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccc-cCCceeecCCHHHHhhhhhcCCcceecccCCc-
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFC-DKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP- 251 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~-~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~- 251 (532)
.+||||+||||||||||+|||++|+++..+|+ +||||++||+||+ ++++ ++|+++.|++|+++|||+|||||+.+
T Consensus 393 ~~~IgIltsGGdapGmNaaIravv~~a~~~g~-~v~Gi~~G~~GL~~~~~~--~~L~~~~v~~i~~~GGt~LGTsR~~~~ 469 (787)
T 3o8o_A 393 RLNIGIVHVGAPSAALNAATRAATLYCLSHGH-KPYAIMNGFSGLIQTGEV--KELSWIDVENWHNLGGSEIGTNRSVAS 469 (787)
T ss_dssp CCEEEEEEESSCCSSHHHHHHHHHHHHHHHTC-EEEEETTHHHHHHHHCCE--EECCTTTTTTGGGCCSCTTCCBCCCGG
T ss_pred CcEEEEEccCCCCHHHHHHHHHHHHHHHHCCC-EEEEEccChhhhCCCCCE--EECCHHHHhhhhcCCCceeccCCCCch
Confidence 58999999999999999999999999988898 7999999999999 6776 66899999999999999999999865
Q ss_pred -cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhc-CCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHH
Q 009559 252 -TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKR-RMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINS 329 (532)
Q Consensus 252 -~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr-~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~ 329 (532)
+.++++++|++++||+||+||||||+++|.+|++++++. .++|+||||||||||||++||+|||||||+++++++|++
T Consensus 470 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vIgiPkTIDNDl~gTD~t~GfdTA~~~~~eaid~ 549 (787)
T 3o8o_A 470 EDLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNNVPGTEYSLGVDTCLNALVNYTDD 549 (787)
T ss_dssp GCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTTCGGGGSCEEEEEBCTTCCCTTCSCCBTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCceeecccccccCCCCCcCCCCchHHHHHHHHHHHH
Confidence 688999999999999999999999999999999875443 357999999999999999999999999999999999999
Q ss_pred HHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHH---Hh---cc--CceEEEe
Q 009559 330 AYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYL---IE---TK--GSAVVCV 401 (532)
Q Consensus 330 a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~---~~---~k--g~~VVVV 401 (532)
++++|.|+++||+|||||||+|||||++++||+| ||+|||||+||+++ .+++.|+++ ++ ++ .+.+|+|
T Consensus 550 i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~g-a~~iliPE~~~~~~---~~~~~i~~~~~~~~~~~g~~~~~~iivv 625 (787)
T 3o8o_A 550 IKQSASATRRRVFVCEVQGGHSGYIASFTGLITG-AVSVYTPEKKIDLA---SIREDITLLKENFRHDKGENRNGKLLVR 625 (787)
T ss_dssp HHHHHHHHSSEEEEEEECCTTCTHHHHHHHHTTT-CSEEECSSSCCCHH---HHHHHHHHHHHHHHHCCSCSSCCEEEEE
T ss_pred HHHHhhccCCcEEEEEeCCCCccHHHHHHHHhcC-CCEEEeCCCCCCHH---HHHHHHHHHHHHHHHhhcCCCCceEEEE
Confidence 9999988899999999999999999999999998 99999999999987 677776643 32 23 3489999
Q ss_pred eccccchhhcccccccCCCCccccchHHHHHHHHHHHHHhcCcceeEEEeCCCceeccCCCCchhHHHHHHhhHHHHHhH
Q 009559 402 AEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHGA 481 (532)
Q Consensus 402 AEGag~~l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~~~vk~idpgy~iRs~~p~a~D~i~c~~LG~~AV~~a 481 (532)
+||+...+ .+.+|++.|++.+ +..+++|+..|||+|||+.|+++||++|++||..||+++
T Consensus 626 aEg~~~~~-----------------~~~~la~~i~~~~---~~~~e~R~tvLGhiQRGG~Ps~~DR~lAtr~G~~Av~~l 685 (787)
T 3o8o_A 626 NEQASSVY-----------------STQLLADIISEAS---KGKFGVRTAIPGHVQQGGVPSSKDRVTASRFAVKCIKFI 685 (787)
T ss_dssp ETTSCSSS-----------------CHHHHHHHHHHHH---TTSSEEEEEBCGGGGGCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred eCCccCCC-----------------CHHHHHHHHHHHh---CCCceeEEecccccccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99985311 1567888887764 234689999999999999999999999999999999999
Q ss_pred hcCC---------------------------------ccEEEEEECCeeEEechhhHhcCC---CcCCCCcHHHHHHHHh
Q 009559 482 FAGF---------------------------------SGITVGLCNTHYAYFPIPEVISYP---RAVDPNSRMWHRCLTS 525 (532)
Q Consensus 482 ~aG~---------------------------------Tg~mVgi~n~~~~~vPi~ev~~~~---k~vd~~~~~w~~~l~~ 525 (532)
++|. +++|||+.+++++++||+++.+.. +...|+..||..+...
T Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~i~~~p~~~~~~~~~d~~~r~~~~~~w~~~~~~ 765 (787)
T 3o8o_A 686 EQWNKKNEASPNTDAKVLRFKFDTHGEKVPTVEHEDDSAAVICVNGSHVSFKPIANLWENETNVELRKGFEVHWAEYNKI 765 (787)
T ss_dssp HHHHHTCC--------------------------CGGGEEEEEEETTEEEEEEHHHHTTSBCTTTTCSBSCCCCHHHHHH
T ss_pred HhCcccccccccccccccccccccccccccccccCCCceEEEEEECCEEEEeeHHHHHhhccchhhCCCcChHHHhHHHH
Confidence 8876 789999999999999999998532 4566788999987654
No 15
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=1e-75 Score=663.51 Aligned_cols=326 Identities=19% Similarity=0.278 Sum_probs=286.4
Q ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccc-cCCceeecCCHHHHhhhhhcCCcceecccCCc
Q 009559 173 EEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFC-DKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP 251 (532)
Q Consensus 173 ~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~-~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~ 251 (532)
+.+||||+||||||||||++||++|+++..+|+ +||||++||+||+ ++++ ++|+++.|++|+++|||+|||||..+
T Consensus 570 ~~~rIgIltsGGdapGmNaaIravv~~a~~~g~-~V~Gi~~G~~GL~~~~~~--~~L~~~~V~~i~~~GGTiLGTsR~~~ 646 (941)
T 3opy_B 570 KRKKIAIINVGAPAGGMNSAVYSMATYCMSRGH-VPYAIHNGFSGLARHESV--RSINWLDIEGWGSLGGSEIGTNRTLP 646 (941)
T ss_dssp GCCEEEEEEESSCCTTHHHHHHHHHHHHHHHTC-EEEEETTHHHHHHHHCCE--EECCTTTTTTGGGCCSCSSCEECCCT
T ss_pred cCcEEEEEecCCCcHHHHHHHHHHHHHHHHCCC-EEEEEccchHhhCcCCcE--EECCHHHHhChhhCCCcEeccCCCCc
Confidence 368999999999999999999999999988898 7999999999999 6765 56899999999999999999999755
Q ss_pred ---cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhc-CCCceEeeeecccccCCCCCCccCChhhHHHHHHHHH
Q 009559 252 ---TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKR-RMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAI 327 (532)
Q Consensus 252 ---~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr-~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI 327 (532)
+.++++++|++++||+||+||||||+++|.+|+++.++. .++|+||||||||||||++||+|||||||+++++++|
T Consensus 647 ~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vVGIPkTIDNDl~gTD~TiGfdTA~~~i~eai 726 (941)
T 3opy_B 647 NDADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATISNNVPGTEYSLGSDTCLNSFMEYC 726 (941)
T ss_dssp TTSCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHGGGTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeeccccCCCCCCCCCCChHHHHHHHHHHH
Confidence 578999999999999999999999999999998765432 3579999999999999999999999999999999999
Q ss_pred HHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHH---HHh-----ccCceEE
Q 009559 328 NSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKY---LIE-----TKGSAVV 399 (532)
Q Consensus 328 ~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~---~~~-----~kg~~VV 399 (532)
++++++|.|+++||+|||+|||+|||||++++||+| ||+|||||.||+++ .+++.|++ +++ .+.+.+|
T Consensus 727 d~i~~tA~ssh~RvfiVEvMGR~aG~LAl~agLA~G-Ad~ilIPE~~~~l~---~l~~~i~~l~~~~~~~~g~~~~~~iI 802 (941)
T 3opy_B 727 DVIKQSAAATRNRVFVVEVQGGNSGYIATHAQLACG-AQISYVPEEGISLA---QLEMDINSLKESFANDQGKTKSGRLI 802 (941)
T ss_dssp HHHHHHHHHC-CEEEEEEECSTTCCHHHHHHHHHHT-CSEEECTTTCCCHH---HHHHHHHHHHHHHHTCTTSCCCCEEE
T ss_pred HHHHHHhhhcCCcEEEEEeCCcchhHHHHHHHHhhC-CCEEEeCCCCCCHH---HHHHHHHHHHHHHhhhhcCCCCceEE
Confidence 999999988899999999999999999999999998 99999999999987 67766654 332 2345899
Q ss_pred EeeccccchhhcccccccCCCCccccchHHHHHHHHHHHHHhcCcceeEEEeCCCceeccCCCCchhHHHHHHhhHHHHH
Q 009559 400 CVAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILCTVLGQNAVH 479 (532)
Q Consensus 400 VVAEGag~~l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~~~vk~idpgy~iRs~~p~a~D~i~c~~LG~~AV~ 479 (532)
+||||+...+ .+.+|++.|++++ +..+++|+..|||+|||+.|+++||++|+++|..||+
T Consensus 803 vvaEga~~~~-----------------~~~~la~~i~~~~---~~g~e~R~tvLGHiQRGG~Psa~DRilAtr~G~~Av~ 862 (941)
T 3opy_B 803 LKSENASKVL-----------------TTEVISTIIDDEA---SGRFDSKTAIPGHVQQGGIPSPMDRVRASRFAIRAVS 862 (941)
T ss_dssp EEEGGGCSSS-----------------CHHHHHHHHHHHH---TTSSEEEEECCCTTTTCSSCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCccCCC-----------------CHHHHHHHHHHHh---CCCceeEEccccccccCCCCCHHHHHHHHHHHHHHHH
Confidence 9999985321 1467888887764 2346899999999999999999999999999999999
Q ss_pred hHhcCC--------------------ccEEEEEECCeeEEechhhHhcCC---CcCCCCcHHHHHHHHh
Q 009559 480 GAFAGF--------------------SGITVGLCNTHYAYFPIPEVISYP---RAVDPNSRMWHRCLTS 525 (532)
Q Consensus 480 ~a~aG~--------------------Tg~mVgi~n~~~~~vPi~ev~~~~---k~vd~~~~~w~~~l~~ 525 (532)
++++|. +++|||+++++++++||+++.+.. +...|+..||..+...
T Consensus 863 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~i~~~pi~e~~~~~~d~~~r~p~~~~w~~~~~~ 931 (941)
T 3opy_B 863 FIERHSDRCQTFKNSISFRQTDEITSTAVVLGIHKSQLRFTPIRQLYDFESDVPRRMRKNIFWSNVREI 931 (941)
T ss_dssp HHHHHHHHHHHHHSCSCCCCCHHHHTTEEEEEECC-CEEEEEHHHHHHTSCCTTTTCC-CCSTHHHHHH
T ss_pred HHHhCCcccccccccccccccccCCCceEEEEEECCEEEEEEHHHHHhhccchhhcCCcchHHHhHHHH
Confidence 999998 899999999999999999998532 5566889999987654
No 16
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=1.8e-74 Score=652.10 Aligned_cols=326 Identities=17% Similarity=0.248 Sum_probs=282.1
Q ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccc-cCCceeecCCHHHHhhhhhcCCcceecccCCc
Q 009559 173 EEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFC-DKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP 251 (532)
Q Consensus 173 ~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~-~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~ 251 (532)
+.+||||+||||||||||+|||++|+++..+|+ +||||++||+||+ ++++ ++|+++.|++|+++|||+|||||+.+
T Consensus 597 ~~~rIgIltsGGdaPGmNAaIravV~~a~~~g~-~V~Gi~~G~~GLl~~~~~--~~L~~~~V~~i~~~GGTiLGTsR~~~ 673 (989)
T 3opy_A 597 SRLNIAIIHVGAPTSALNPATRVATLNSLAKGH-RVFAIRNGFAGLIRHGAV--RELNWIDVEDWHNTGGSEIGTNRSLP 673 (989)
T ss_dssp GCCEEEEEEESSCCTTHHHHHHHHHHHHHHTTC-EEEEETTHHHHHHHHCCE--EEECTTTTTTTTTCCSCSSCCBCCCG
T ss_pred CCceEEEEecCCCCHHHHHHHHHHHHHHHHCCC-EEEEEccChhhhcCCCcE--EECCHHHhhCHhhCCCcEeccCCCCc
Confidence 368999999999999999999999999988998 7999999999999 7776 56899999999999999999999864
Q ss_pred --cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhc-CCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHH
Q 009559 252 --TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKR-RMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAIN 328 (532)
Q Consensus 252 --~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr-~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~ 328 (532)
+.++++++|++++||+||+||||||+++|++|+++.++. .++|+||||||||||||++||+|||||||++.++++|+
T Consensus 674 ~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~y~~~~I~vVGIPkTIDNDl~gTD~TiGFdTAvn~~~eaId 753 (989)
T 3opy_A 674 SDDMGTVAYYFQQYKFDGLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCLNTLSGYCD 753 (989)
T ss_dssp GGGHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHTTTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhCCCcCCcEEeccccccCCCCCCcCCCChHHHHHHHHHHHH
Confidence 688999999999999999999999999999999865432 35799999999999999999999999999999999999
Q ss_pred HHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHH---HHh-c----cCceEEE
Q 009559 329 SAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKY---LIE-T----KGSAVVC 400 (532)
Q Consensus 329 ~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~---~~~-~----kg~~VVV 400 (532)
+++.+|.|+++||+|||+|||+|||||++++||+| +|+|||||+||+++ .+++.|++ +++ + +.+++||
T Consensus 754 ~i~~tA~ssh~RvfIVEVMGR~aG~LAl~agLA~G-Ad~ilIPE~~f~l~---~l~~~i~~l~~~~~~~~g~~~~~~IIv 829 (989)
T 3opy_A 754 AVKQSASASRRRTFVVEVQGGYSGYLASYAGLITG-ALAVYTPENPINLQ---TVQEDIELLTRTYEEDDGKNRSGKIFI 829 (989)
T ss_dssp HHHHHTC-CCCSEEEEEECCTTCSHHHHHHHHHHT-CSCEECTTSCCCHH---HHHHHHHHHHHHHTTCC---CCCEEEE
T ss_pred HHHHHHHhcCCcEEEEEeCCcchhHHHHHHHHhcC-CCEEEeCCCCCCHH---HHHHHHHHHHHHHHHhccCCccceEEE
Confidence 99999998899999999999999999999999998 99999999999987 67766654 432 1 3468999
Q ss_pred eeccccchhhcccccccCCCCccccchHHHHHHHHHHHHHhcCcceeEEEeCCCceeccCCCCchhHHHHHHhhHHHHHh
Q 009559 401 VAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHG 480 (532)
Q Consensus 401 VAEGag~~l~~~~~~~DasGn~~l~dIg~~L~~~I~~~f~~~g~~~~vk~idpgy~iRs~~p~a~D~i~c~~LG~~AV~~ 480 (532)
||||+...+ .+.+|+++|+++. +..+++|+..|||+|||+.|+++||++|++||..||++
T Consensus 830 vaEga~~~~-----------------~~~~la~~i~e~~---~~~~e~R~tvLGHiQRGG~Psa~DRilAtr~G~~Ave~ 889 (989)
T 3opy_A 830 HNEKASKVY-----------------TTDLIAAIIGEAG---KGRFESRTAVPGHVQQGKSPSSIDRVNACRLAIKCCNF 889 (989)
T ss_dssp EESSSCSSS-----------------CHHHHHHHHHHTT---TTTSCEEEECCGGGGGCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EeCCCcCCC-----------------CHHHHHHHHHHhc---CCCceeEecccccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999985321 1457777776652 23468999999999999999999999999999999999
Q ss_pred HhcCC---------------------------------------ccEEEEEECCeeEEechhhHhc-C--CCcCCCCcHH
Q 009559 481 AFAGF---------------------------------------SGITVGLCNTHYAYFPIPEVIS-Y--PRAVDPNSRM 518 (532)
Q Consensus 481 a~aG~---------------------------------------Tg~mVgi~n~~~~~vPi~ev~~-~--~k~vd~~~~~ 518 (532)
++++. +.+++|+++.++.+.|+.++.+ . -+...|+..|
T Consensus 890 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~l~~~~~d~~~r~p~~~~ 969 (989)
T 3opy_A 890 IEDANFQVKHNANLSADERHLRFFYDDGVKTSAVSGKSSVIDDNTSVVIGIQGSEVTFTPVKQLWENETHHKWRKGKNVH 969 (989)
T ss_dssp HTCGGGSCCSBSCCCHHHHHHTEEEETTEEEETTTCSSCCCCGGGEEEEEEETTEEEEEEHHHHHHHSCTTTC----CCC
T ss_pred HHccccccccccccccccccccccccccccccccccccccCCCCcEEEEEEECCEEEEEEHHHhhhhccchhhCCCcChH
Confidence 99866 3678999999999999999852 2 2556678899
Q ss_pred HHHHHHh
Q 009559 519 WHRCLTS 525 (532)
Q Consensus 519 w~~~l~~ 525 (532)
|..+...
T Consensus 970 W~~~~~~ 976 (989)
T 3opy_A 970 WEQLNIV 976 (989)
T ss_dssp CHHHHHH
T ss_pred HHhHHHH
Confidence 9987654
No 17
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=96.14 E-value=0.0086 Score=60.31 Aligned_cols=100 Identities=21% Similarity=0.270 Sum_probs=60.2
Q ss_pred cccccCCCC---cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCc
Q 009559 166 EEIYFKPEE---VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGS 242 (532)
Q Consensus 166 ~~i~f~p~~---~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGS 242 (532)
+.|||.|.- ||++|+.--..- ...+...|..+|+ +++--... . +
T Consensus 18 ~~~~~~~~~~~~mki~iv~~~~~~------~~~l~~~L~~~g~-~v~~~~~~--------------~-~----------- 64 (278)
T 1z0s_A 18 ENLYFQGGGGGGMRAAVVYKTDGH------VKRIEEALKRLEV-EVELFNQP--------------S-E----------- 64 (278)
T ss_dssp ------------CEEEEEESSSTT------HHHHHHHHHHTTC-EEEEESSC--------------C-G-----------
T ss_pred ceEEEcCCCccceEEEEEeCCcHH------HHHHHHHHHHCCC-EEEEcccc--------------c-c-----------
Confidence 568888774 799999875543 6677778888898 45421110 0 0
Q ss_pred ceecccCCccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHH--
Q 009559 243 LLGVSRGAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAV-- 320 (532)
Q Consensus 243 iLGTSR~~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv-- 320 (532)
.+ .+.|.++++|||||+..|.+... +. ++|+||.- -++||-|.+
T Consensus 65 ~~------------------~~~DlvIvlGGDGT~L~aa~~~~-----~~-~PilGIN~----------G~lGFLt~~~~ 110 (278)
T 1z0s_A 65 EL------------------ENFDFIVSVGGDGTILRILQKLK-----RC-PPIFGINT----------GRVGLLTHASP 110 (278)
T ss_dssp GG------------------GGSSEEEEEECHHHHHHHHTTCS-----SC-CCEEEEEC----------SSSCTTCCBBT
T ss_pred cc------------------CCCCEEEEECCCHHHHHHHHHhC-----CC-CcEEEECC----------CCCccccccCH
Confidence 00 17899999999999966554321 23 89999973 288998776
Q ss_pred HHHHHHHHHHHH
Q 009559 321 EEAQRAINSAYI 332 (532)
Q Consensus 321 ~~a~~aI~~a~~ 332 (532)
+.+.++++.+..
T Consensus 111 ~~~~~~l~~l~~ 122 (278)
T 1z0s_A 111 ENFEVELKKAVE 122 (278)
T ss_dssp TBCHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 445566666544
No 18
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=95.72 E-value=0.035 Score=55.11 Aligned_cols=89 Identities=19% Similarity=0.171 Sum_probs=52.4
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHH
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVS 254 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~ 254 (532)
.|++|++-.+ .+..+..++.+...|..+|+ +++.......++- ..| ... ...+
T Consensus 6 kki~ii~np~-~~~~~~~~~~i~~~l~~~g~-~v~~~~~~~~~~~-------------------~~~----~~~--~~~~ 58 (292)
T 2an1_A 6 KCIGIVGHPR-HPTALTTHEMLYRWLCDQGY-EVIVEQQIAHELQ-------------------LKN----VPT--GTLA 58 (292)
T ss_dssp CEEEEECC--------CHHHHHHHHHHHTTC-EEEEEHHHHHHTT-------------------CSS----CCE--ECHH
T ss_pred cEEEEEEcCC-CHHHHHHHHHHHHHHHHCCC-EEEEecchhhhcc-------------------ccc----ccc--cchh
Confidence 4799998866 47888899999999999998 4654433222210 001 000 0111
Q ss_pred HHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeee
Q 009559 255 EIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVP 300 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIP 300 (532)
. ...+.|.++++|||||+..|..... +.+++++|||
T Consensus 59 ~-----~~~~~D~vi~~GGDGT~l~a~~~~~-----~~~~P~lGI~ 94 (292)
T 2an1_A 59 E-----IGQQADLAVVVGGDGNMLGAARTLA-----RYDINVIGIN 94 (292)
T ss_dssp H-----HHHHCSEEEECSCHHHHHHHHHHHT-----TSSCEEEEBC
T ss_pred h-----cccCCCEEEEEcCcHHHHHHHHHhh-----cCCCCEEEEE
Confidence 1 2347899999999999977654331 2358999998
No 19
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=95.22 E-value=1.2 Score=42.33 Aligned_cols=174 Identities=9% Similarity=0.004 Sum_probs=92.8
Q ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCcc
Q 009559 173 EEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPT 252 (532)
Q Consensus 173 ~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~ 252 (532)
+..+||+++..-.-|-...++.++...+..+|+. +.-+. +......
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~~---------------------------------~~~~~~~ 49 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGT-AIALD---------------------------------AGRNDQT 49 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCE-EEEEE---------------------------------CTTCHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCE-EEEEc---------------------------------CCCCHHH
Confidence 3468999998877888888999999998888873 32110 0000112
Q ss_pred HHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHHHHH
Q 009559 253 VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYI 332 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~a~~ 332 (532)
..++++.+...++|++++.+.+.+... ...+.+.+. +|+||.+ |++.+....++++|-. +.+..+.+.+..
T Consensus 50 ~~~~~~~l~~~~vdgiIi~~~~~~~~~--~~~~~~~~~--~iPvV~~----~~~~~~~~~~V~~D~~-~~g~~~~~~l~~ 120 (291)
T 3l49_A 50 QVSQIQTLIAQKPDAIIEQLGNLDVLN--PWLQKINDA--GIPLFTV----DTATPHAINNTTSNNY-SIGAELALQMVA 120 (291)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCHHHHH--HHHHHHHHT--TCCEEEE----SCCCTTCSEEEEECHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCChhhhH--HHHHHHHHC--CCcEEEe----cCCCCCcCceEecChH-HHHHHHHHHHHH
Confidence 346778888899999999998754322 223444444 4667765 3333322234555432 122223333322
Q ss_pred hhhhccccEEEEEec-C------CCccHHHHHHhHhcCCccEEEcCCCCCCC-C-ChhHHHHHHHHHHhcc
Q 009559 333 EAHSAYHGIGIVKLM-G------RSSGYIAMHASLASGQIDICLIPESPFNL-H-GPNGVLRHLKYLIETK 394 (532)
Q Consensus 333 eA~S~~~~V~vVevM-G------R~sG~LA~~aaLAsg~ad~~LIPE~pf~l-e-g~~~ll~~lk~~~~~k 394 (532)
.... +++|.++--- + |..||. .++... .++-++.+..... + ..+.-.+.+++.++..
T Consensus 121 ~~~g-~~~i~~i~~~~~~~~~~~R~~gf~---~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (291)
T 3l49_A 121 DLGG-KGNVLVFNGFYSVPVCKIRYDQMK---YVLEAF-PDVKIIEPELRDVIPNTIQSAYSNVTDMLTKY 186 (291)
T ss_dssp HHTT-CEEEEEECSCTTSHHHHHHHHHHH---HHHHTC-TTEEECSSCBCCCSSSHHHHHHHHHHHHHHHC
T ss_pred HcCC-CceEEEEeCCCCCchHHHHHHHHH---HHHHHC-CCCEEEeeeccCCCCCCHHHHHHHHHHHHHhC
Confidence 2223 4568777311 1 233443 334322 2454444332211 1 1234556677777654
No 20
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=93.49 E-value=0.046 Score=54.14 Aligned_cols=45 Identities=20% Similarity=0.378 Sum_probs=29.9
Q ss_pred HHHHHHHHHhC-------CcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeec
Q 009559 254 SEIVDSMEERG-------INMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPK 301 (532)
Q Consensus 254 ~~ivd~L~~~g-------Id~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPK 301 (532)
+++.+.|+++| .|.++++|||||+..|..... ....+++++|||-
T Consensus 18 ~~l~~~l~~~g~~v~~~~~D~vv~lGGDGT~l~aa~~~~---~~~~~~PilGIn~ 69 (272)
T 2i2c_A 18 LNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYE---ERLDEIAFIGIHT 69 (272)
T ss_dssp HHHHHHHTTSSCEECSSSCSEEEEEESHHHHHHHHHHTG---GGTTTCEEEEEES
T ss_pred HHHHHHHHHCCCEeCCCCCCEEEEEcCcHHHHHHHHHHh---hcCCCCCEEEEeC
Confidence 34455555554 599999999999976654321 1112689999974
No 21
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=93.24 E-value=5.2 Score=38.12 Aligned_cols=175 Identities=8% Similarity=0.011 Sum_probs=96.2
Q ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC-c
Q 009559 173 EEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA-P 251 (532)
Q Consensus 173 ~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~-~ 251 (532)
+..+|++++....-|=...++.++...+..+|+. +.-+. .+... .
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~~---------------------------------~~~~~~~ 48 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQALNVT-VEYRG---------------------------------AAQYDIQ 48 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCE-EEEEE---------------------------------CSSSCHH
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHHcCCE-EEEeC---------------------------------CCcCCHH
Confidence 3468999999999999999999999999888873 42110 00111 1
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCC--CccCChhhHHHHHHHHHHH
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLM--DKTFGFDTAVEEAQRAINS 329 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~t--D~SfGFdTAv~~a~~aI~~ 329 (532)
...+.++.+...++|++++.+.+.+.. ....+.+.+. +|+||.+ |++++.. ..++++|-. +.+..+.+.
T Consensus 49 ~~~~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~--~iPvV~~----~~~~~~~~~~~~V~~d~~-~~g~~~~~~ 119 (305)
T 3g1w_A 49 EQITVLEQAIAKNPAGIAISAIDPVEL--TDTINKAVDA--GIPIVLF----DSGAPDSHAHSFLGTNNY-NAGMNAAYK 119 (305)
T ss_dssp HHHHHHHHHHHHCCSEEEECCSSTTTT--HHHHHHHHHT--TCCEEEE----SSCCTTSCCSCEEECCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCHHHH--HHHHHHHHHC--CCcEEEE----CCCCCCCceeEEECcCHH-HHHHHHHHH
Confidence 234677888889999999999876521 1122333333 4677754 5554432 245565542 222233333
Q ss_pred HHHhhhhccccEEEEEecC------CCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccC
Q 009559 330 AYIEAHSAYHGIGIVKLMG------RSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKG 395 (532)
Q Consensus 330 a~~eA~S~~~~V~vVevMG------R~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg 395 (532)
+..... -+++|+++--.+ |..||..+.....- ..+...+.+..++. +.-.+.+++.++...
T Consensus 120 l~~~~~-g~~~i~~i~~~~~~~~~~R~~gf~~~l~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~ 186 (305)
T 3g1w_A 120 MAELLD-GEGEVAVITLPNQLNHQERTTGFKETLEAEFP-AIEVIAVEDGRGDS---LHSRRVAHQLLEDYP 186 (305)
T ss_dssp HHHHTT-TCEEEEEEECTTCHHHHHHHHHHHHHHHHHCT-TEEEEEEEECTTCH---HHHHHHHHHHHHHCT
T ss_pred HHHHhC-CCcEEEEEeCCCcccHHHHHHHHHHHHHhhCC-CCEEEEEecCCCCH---HHHHHHHHHHHHhCC
Confidence 322211 256788876433 33455543332211 23444443444443 355566777776543
No 22
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=92.87 E-value=2.9 Score=41.35 Aligned_cols=174 Identities=12% Similarity=0.145 Sum_probs=93.4
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHH
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVS 254 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~ 254 (532)
.+||+++..-.-|-...++.++...+..+|+. ++-. ..+ -+. ..-.
T Consensus 71 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~--------~~~-----~~~--------------------~~~~ 116 (355)
T 3e3m_A 71 GFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQ-LLLG--------YTA-----YSP--------------------EREE 116 (355)
T ss_dssp CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCE-EEEE--------ECT-----TCH--------------------HHHH
T ss_pred CEEEEEeCCCCchHHHHHHHHHHHHHHHCCCE-EEEE--------eCC-----CCh--------------------HHHH
Confidence 47999998877788888999999988888883 4211 000 000 1224
Q ss_pred HHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCC-CCCccCChhh--HHHHHHHHHHHHH
Q 009559 255 EIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDIL-LMDKTFGFDT--AVEEAQRAINSAY 331 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~-~tD~SfGFdT--Av~~a~~aI~~a~ 331 (532)
++++.|...++|++++.+.+.+... .+.+.+. +++||.+ |+... ....++++|- +...+++.+-.
T Consensus 117 ~~~~~l~~~~vdGiI~~~~~~~~~~----~~~l~~~--~iPvV~i----~~~~~~~~~~~V~~D~~~~~~~a~~~L~~-- 184 (355)
T 3e3m_A 117 QLVETMLRRRPEAMVLSYDGHTEQT----IRLLQRA--SIPIVEI----WEKPAHPIGHTVGFSNERAAYDMTNALLA-- 184 (355)
T ss_dssp HHHHHHHHTCCSEEEEECSCCCHHH----HHHHHHC--CSCEEEE----SSCCSSCSSEEEECCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhCCCCEEEEeCCCCCHHH----HHHHHhC--CCCEEEE----CCccCCCCCCEEEeChHHHHHHHHHHHHH--
Confidence 6778888999999999998765432 2333443 4677765 22111 1123455543 33333332221
Q ss_pred HhhhhccccEEEEEec--------CCCccHHHHHHhHhcCCcc-EEEcCCCCCCCCChhHHHHHHHHHHhcc--CceEEE
Q 009559 332 IEAHSAYHGIGIVKLM--------GRSSGYIAMHASLASGQID-ICLIPESPFNLHGPNGVLRHLKYLIETK--GSAVVC 400 (532)
Q Consensus 332 ~eA~S~~~~V~vVevM--------GR~sG~LA~~aaLAsg~ad-~~LIPE~pf~leg~~~ll~~lk~~~~~k--g~~VVV 400 (532)
.. +++|+++--. -|..||..+.....-. .+ .+.+.+.+++.+ .-.+.+++.++.. --+|++
T Consensus 185 ---~G-~r~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~-~~~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~ai~~ 256 (355)
T 3e3m_A 185 ---RG-FRKIVFLGEKDDDWTRGAARRAGFKRAMREAGLN-PDQEIRLGAPPLSIE---DGVAAAELILQEYPDTDCIFC 256 (355)
T ss_dssp ---TT-CCSEEEEEESSCTTSHHHHHHHHHHHHHHHTTSC-SCCEEEESCSSCCHH---HHHHHHHHHHHHCTTCCEEEE
T ss_pred ---CC-CCeEEEEccCcccChhHHHHHHHHHHHHHHCCcC-CCccEEEecCCCCHH---HHHHHHHHHHcCCCCCcEEEE
Confidence 23 5678877532 2445665543322111 22 233333445433 3445666666543 235544
Q ss_pred ee
Q 009559 401 VA 402 (532)
Q Consensus 401 VA 402 (532)
.+
T Consensus 257 ~n 258 (355)
T 3e3m_A 257 VS 258 (355)
T ss_dssp SS
T ss_pred CC
Confidence 33
No 23
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=91.66 E-value=9.5 Score=36.36 Aligned_cols=179 Identities=14% Similarity=0.094 Sum_probs=95.0
Q ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCcc
Q 009559 173 EEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPT 252 (532)
Q Consensus 173 ~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~ 252 (532)
.+.+||+++..-.-|-...++.++...+..+|++ +.-.. .+ + ......
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~~--------~~-------------------~----~~~~~~ 49 (297)
T 3rot_A 2 VRDKYYLITHGSQDPYWTSLFQGAKKAAEELKVD-LQILA--------PP-------------------G----ANDVPK 49 (297)
T ss_dssp -CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCE-EEEEC--------CS-------------------S----SCCHHH
T ss_pred ceEEEEEEecCCCCchHHHHHHHHHHHHHHhCcE-EEEEC--------CC-------------------C----cCCHHH
Confidence 4678999999888899999999999999888873 32100 00 0 001112
Q ss_pred HHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCC-----CCccCChhh--HHHHHHH
Q 009559 253 VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILL-----MDKTFGFDT--AVEEAQR 325 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~-----tD~SfGFdT--Av~~a~~ 325 (532)
..+.++.|...++|++++.+-+.... ....+.+.+. +|+||.+ |++++. ...++++|- +...+++
T Consensus 50 ~~~~i~~l~~~~vdgiii~~~~~~~~--~~~~~~~~~~--giPvV~~----~~~~~~~~~~~~~~~V~~D~~~~g~~a~~ 121 (297)
T 3rot_A 50 QVQFIESALATYPSGIATTIPSDTAF--SKSLQRANKL--NIPVIAV----DTRPKDKTKNPYLVFLGSDNLLAGKKLGE 121 (297)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCSSTT--HHHHHHHHHH--TCCEEEE----SCCCSCTTTSCCSCEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCHHHH--HHHHHHHHHC--CCCEEEE----cCCCccccccCcceEEccChHHHHHHHHH
Confidence 34677888889999999988776521 1112333333 4677755 444433 123444443 3333333
Q ss_pred HHHHHHHhhhhccccEEEEEec-------CCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccC--c
Q 009559 326 AINSAYIEAHSAYHGIGIVKLM-------GRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKG--S 396 (532)
Q Consensus 326 aI~~a~~eA~S~~~~V~vVevM-------GR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg--~ 396 (532)
.+... . ..+++|.++--. -|..||..+.... + ..++.+. ... ..+.-.+.+++.++.+. -
T Consensus 122 ~l~~~---g-~~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~--g-~~~~~~~-~~~---~~~~~~~~~~~~l~~~~~~~ 190 (297)
T 3rot_A 122 KALEL---T-PSAKRALVLNPQPGHIGLEKRAYGIKTILQDK--G-IFFEELD-VGT---DPNQVQSRVKSYFKIHPETN 190 (297)
T ss_dssp HHHHH---C-TTCCEEEEEESCTTCHHHHHHHHHHHHHHHHT--T-CEEEEEE-CCS---CHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHh---c-CCCceEEEEeCCCCcHHHHHHHHHHHHHHHhc--C-CeEEEee-cCC---ChHHHHHHHHHHHHhCCCCC
Confidence 33321 1 114567776422 1445665543332 3 4544432 111 23345556666665443 3
Q ss_pred eEEEee
Q 009559 397 AVVCVA 402 (532)
Q Consensus 397 ~VVVVA 402 (532)
+|++.+
T Consensus 191 ai~~~~ 196 (297)
T 3rot_A 191 IIFCLT 196 (297)
T ss_dssp EEEESS
T ss_pred EEEEcC
Confidence 444433
No 24
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=91.45 E-value=9.2 Score=37.38 Aligned_cols=175 Identities=13% Similarity=0.124 Sum_probs=92.7
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccH
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTV 253 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~ 253 (532)
..+||++...-.-|-...++.++-..+..+|+. ++-. ..+ -+. ...
T Consensus 62 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~--------~~~-----~~~--------------------~~~ 107 (339)
T 3h5o_A 62 SRTVLVLIPSLANTVFLETLTGIETVLDAAGYQ-MLIG--------NSH-----YDA--------------------GQE 107 (339)
T ss_dssp -CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCE-EEEE--------ECT-----TCH--------------------HHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCE-EEEE--------eCC-----CCh--------------------HHH
Confidence 357999998877788889999999998888873 4210 000 000 122
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhh--HHHHHHHHHHHHH
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDT--AVEEAQRAINSAY 331 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdT--Av~~a~~aI~~a~ 331 (532)
.++++.|...++|++++.+-+.+... .+.+.+. +++||.+=...+.+. + ++++|- +...+++.+-.
T Consensus 108 ~~~~~~l~~~~vdGiIi~~~~~~~~~----~~~l~~~--~iPvV~~~~~~~~~~---~-~V~~D~~~~~~~a~~~L~~-- 175 (339)
T 3h5o_A 108 LQLLRAYLQHRPDGVLITGLSHAEPF----ERILSQH--ALPVVYMMDLADDGR---C-CVGFSQEDAGAAITRHLLS-- 175 (339)
T ss_dssp HHHHHHHHTTCCSEEEEECSCCCTTH----HHHHHHT--TCCEEEEESCCSSSC---C-EEECCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHcCCCCEEEEeCCCCCHHH----HHHHhcC--CCCEEEEeecCCCCC---e-EEEECHHHHHHHHHHHHHH--
Confidence 46678888899999999997654322 2333333 467776622222111 1 555553 33333333221
Q ss_pred HhhhhccccEEEEEec------CCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccC--ceEEEe
Q 009559 332 IEAHSAYHGIGIVKLM------GRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKG--SAVVCV 401 (532)
Q Consensus 332 ~eA~S~~~~V~vVevM------GR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg--~~VVVV 401 (532)
.. +++|+++--. -|..||..+.....-...+..++.+..++.+ .-.+.+++.++... -+|++.
T Consensus 176 ---~G-~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~ai~~~ 246 (339)
T 3h5o_A 176 ---RG-KRRIGFLGAQLDERVMKRLDGYRAALDAADCRDAGLEWLDPQPSSMQ---MGADMLDRALAERPDCDALFCC 246 (339)
T ss_dssp ---TT-CCSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSCCCHH---HHHHHHHHHHHHCTTCCEEEES
T ss_pred ---CC-CCeEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCChheEecCCCCHH---HHHHHHHHHHcCCCCCcEEEEC
Confidence 13 5678887432 2445665543322110122233334445433 34455666665432 345443
No 25
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=90.72 E-value=11 Score=35.45 Aligned_cols=88 Identities=7% Similarity=0.030 Sum_probs=57.7
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccH
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTV 253 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~ 253 (532)
..+||+++..-.-|=...++.++...+..+|+. +.-+. +.......
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~~---------------------------------~~~~~~~~ 53 (293)
T 3l6u_A 8 RNIVGFTIVNDKHEFAQRLINAFKAEAKANKYE-ALVAT---------------------------------SQNSRISE 53 (293)
T ss_dssp -CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCE-EEEEE---------------------------------CSSCHHHH
T ss_pred CcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCE-EEEEC---------------------------------CCCCHHHH
Confidence 458999998888888899999999998888883 42110 00001122
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
.+.++.|.+.++|++++.+.+.... ..+.+.+.+. +|+||.+
T Consensus 54 ~~~~~~l~~~~vdgiI~~~~~~~~~--~~~~~~~~~~--~iPvV~~ 95 (293)
T 3l6u_A 54 REQILEFVHLKVDAIFITTLDDVYI--GSAIEEAKKA--GIPVFAI 95 (293)
T ss_dssp HHHHHHHHHTTCSEEEEECSCTTTT--HHHHHHHHHT--TCCEEEE
T ss_pred HHHHHHHHHcCCCEEEEecCChHHH--HHHHHHHHHc--CCCEEEe
Confidence 4677888889999999998876541 1222334443 4677765
No 26
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=90.55 E-value=4.7 Score=38.08 Aligned_cols=123 Identities=15% Similarity=0.088 Sum_probs=74.0
Q ss_pred CCcEEEEEeCC-----CCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecc
Q 009559 173 EEVKAAIVTCG-----GLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVS 247 (532)
Q Consensus 173 ~~~kiaIvt~G-----G~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTS 247 (532)
+..+||+++.. -.-|-...++.++...+.++|+. +.-+ ..+. +
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~--------~~~~-----~------------------ 54 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYA-LYMS--------TGET-----E------------------ 54 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCE-EEEC--------CCCS-----H------------------
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCE-EEEE--------eCCC-----C------------------
Confidence 34579999988 77888999999999999888873 4210 0000 0
Q ss_pred cCCccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCC--CccCChhh--HHHHH
Q 009559 248 RGAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLM--DKTFGFDT--AVEEA 323 (532)
Q Consensus 248 R~~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~t--D~SfGFdT--Av~~a 323 (532)
.....++++.+...++|++++++.+.+-. ..+.+.+. +++||.+ |++++.. -.+++.|- +...+
T Consensus 55 --~~~~~~~~~~~~~~~vdgiIi~~~~~~~~----~~~~l~~~--~iPvV~~----~~~~~~~~~~~~V~~D~~~~g~~a 122 (292)
T 3k4h_A 55 --EEIFNGVVKMVQGRQIGGIILLYSRENDR----IIQYLHEQ--NFPFVLI----GKPYDRKDEITYVDNDNYTAAREV 122 (292)
T ss_dssp --HHHHHHHHHHHHTTCCCEEEESCCBTTCH----HHHHHHHT--TCCEEEE----SCCSSCTTTSCEEECCHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCCCEEEEeCCCCChH----HHHHHHHC--CCCEEEE----CCCCCCCCCCCEEEECcHHHHHHH
Confidence 01124678888889999999999876542 22334444 4667754 5554432 23444443 33334
Q ss_pred HHHHHHHHHhhhhccccEEEEE
Q 009559 324 QRAINSAYIEAHSAYHGIGIVK 345 (532)
Q Consensus 324 ~~aI~~a~~eA~S~~~~V~vVe 345 (532)
++.+.. .. +++|+++-
T Consensus 123 ~~~L~~-----~G-~~~i~~i~ 138 (292)
T 3k4h_A 123 AEYLIS-----LG-HKQIAFIG 138 (292)
T ss_dssp HHHHHH-----TT-CCCEEEEE
T ss_pred HHHHHH-----CC-CceEEEEe
Confidence 333322 13 55787774
No 27
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=89.45 E-value=9 Score=37.36 Aligned_cols=122 Identities=7% Similarity=0.028 Sum_probs=71.7
Q ss_pred CcEEEEEeCC--CCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc
Q 009559 174 EVKAAIVTCG--GLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP 251 (532)
Q Consensus 174 ~~kiaIvt~G--G~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~ 251 (532)
..+||+++.. -.-|=...++.++...+..+|+. +.-+. +....
T Consensus 61 ~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~~----------------------------------~~~~~ 105 (338)
T 3dbi_A 61 TQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQ-LLLAD----------------------------------GKHSA 105 (338)
T ss_dssp CSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCE-EEEEE----------------------------------CTTSH
T ss_pred CCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCE-EEEEe----------------------------------CCCCh
Confidence 4579999887 67788889999999998888873 32110 00011
Q ss_pred -cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCC-ccCChhh--HHHHHHHHH
Q 009559 252 -TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMD-KTFGFDT--AVEEAQRAI 327 (532)
Q Consensus 252 -~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD-~SfGFdT--Av~~a~~aI 327 (532)
.-.+.++.|...++|++++.+.+.+... +.+.+++. +++||.+ |.+++..+ .+++.|- +...+++.+
T Consensus 106 ~~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~~~~~~~~--~iPvV~~----~~~~~~~~~~~V~~D~~~~~~~a~~~L 176 (338)
T 3dbi_A 106 EEERQAIQYLLDLRCDAIMIYPRFLSVDE---IDDIIDAH--SQPIMVL----NRRLRKNSSHSVWCDHKQTSFNAVAEL 176 (338)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSSSCHHH---HHHHHHHC--SSCEEEE----SSCCSSSGGGEECBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCChHH---HHHHHHcC--CCCEEEE----cCCCCCCCCCEEEEChHHHHHHHHHHH
Confidence 1235678888999999999998765432 33333333 4667644 55443321 3445443 333333322
Q ss_pred HHHHHhhhhccccEEEEE
Q 009559 328 NSAYIEAHSAYHGIGIVK 345 (532)
Q Consensus 328 ~~a~~eA~S~~~~V~vVe 345 (532)
-. .. +++|+++-
T Consensus 177 ~~-----~G-~~~I~~i~ 188 (338)
T 3dbi_A 177 IN-----AG-HQEIAFLT 188 (338)
T ss_dssp HH-----TT-CCSEEEEC
T ss_pred HH-----CC-CCEEEEEe
Confidence 21 23 56787763
No 28
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=89.12 E-value=9.4 Score=36.42 Aligned_cols=123 Identities=16% Similarity=0.137 Sum_probs=69.8
Q ss_pred CcEEEEEeC----CCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccC
Q 009559 174 EVKAAIVTC----GGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRG 249 (532)
Q Consensus 174 ~~kiaIvt~----GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~ 249 (532)
..+||+++. .-.-|=...+++++...+..+|+. +.-+. + ..
T Consensus 6 s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~~---------------------------------~-~~ 50 (294)
T 3qk7_A 6 TDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLD-LLLIP---------------------------------D-EP 50 (294)
T ss_dssp CCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCE-EEEEE---------------------------------E-CT
T ss_pred cceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCE-EEEEe---------------------------------C-CC
Confidence 357898886 445567778888888888888873 32110 0 00
Q ss_pred CccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCC-ccCChhh--HHHHHHHH
Q 009559 250 APTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMD-KTFGFDT--AVEEAQRA 326 (532)
Q Consensus 250 ~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD-~SfGFdT--Av~~a~~a 326 (532)
.....++.+.|...++|++++.+.+.+... .+.+.+. +++||.+ |++..... .++++|- +...+++.
T Consensus 51 ~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~----~~~l~~~--~iPvV~~----~~~~~~~~~~~V~~D~~~~~~~a~~~ 120 (294)
T 3qk7_A 51 GEKYQSLIHLVETRRVDALIVAHTQPEDFR----LQYLQKQ--NFPFLAL----GRSHLPKPYAWFDFDNHAGASLAVKR 120 (294)
T ss_dssp TCCCHHHHHHHHHTCCSEEEECSCCSSCHH----HHHHHHT--TCCEEEE----SCCCCSSCCEEEEECHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHcCCCCEEEEeCCCCChHH----HHHHHhC--CCCEEEE----CCCCCCCCCCEEEcChHHHHHHHHHH
Confidence 112346778889999999999998764422 2334444 4667644 44432211 2344442 33333333
Q ss_pred HHHHHHhhhhccccEEEEEec
Q 009559 327 INSAYIEAHSAYHGIGIVKLM 347 (532)
Q Consensus 327 I~~a~~eA~S~~~~V~vVevM 347 (532)
+-. .. +++|+++--.
T Consensus 121 L~~-----~G-~~~I~~i~~~ 135 (294)
T 3qk7_A 121 LLE-----LG-HQRIAFVSTD 135 (294)
T ss_dssp HHH-----TT-CCCEEEEEES
T ss_pred HHH-----CC-CceEEEEeCC
Confidence 222 23 5678877543
No 29
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=88.94 E-value=11 Score=36.87 Aligned_cols=85 Identities=13% Similarity=0.024 Sum_probs=55.3
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHH
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVS 254 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~ 254 (532)
.+||+++..-.-|=...++.++...+..+|+. ++-.. .+ .+ .....
T Consensus 69 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~~--------~~-----~~--------------------~~~~~ 114 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVFPEVLTGINQVLEDTELQ-PVVGV--------TD-----YL--------------------PEKEE 114 (344)
T ss_dssp SEEEEEESCSSSSSHHHHHHHHHHHHTSSSSE-EEEEE--------CT-----TC--------------------HHHHH
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCE-EEEEe--------CC-----CC--------------------HHHHH
Confidence 47999998777788888999998888888873 32100 00 00 11234
Q ss_pred HHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 255 EIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
+.++.|...++|++++.+-+.+-.. .+.+.+. +++||.+
T Consensus 115 ~~i~~l~~~~vdGiIi~~~~~~~~~----~~~l~~~--~iPvV~i 153 (344)
T 3kjx_A 115 KVLYEMLSWRPSGVIIAGLEHSEAA----RAMLDAA--GIPVVEI 153 (344)
T ss_dssp HHHHHHHTTCCSEEEEECSCCCHHH----HHHHHHC--SSCEEEE
T ss_pred HHHHHHHhCCCCEEEEECCCCCHHH----HHHHHhC--CCCEEEE
Confidence 5677888899999999987765422 2334444 4666655
No 30
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=88.67 E-value=7.3 Score=36.89 Aligned_cols=91 Identities=12% Similarity=0.096 Sum_probs=59.5
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccH
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTV 253 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~ 253 (532)
..+||++...-.-|=...++.++...+..+|+. +.-+. +.......
T Consensus 8 ~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~~---------------------------------~~~~~~~~ 53 (291)
T 3egc_A 8 SNVVGLIVSDIENVFFAEVASGVESEARHKGYS-VLLAN---------------------------------TAEDIVRE 53 (291)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE-EEEEE---------------------------------CTTCHHHH
T ss_pred CcEEEEEECCCcchHHHHHHHHHHHHHHHCCCE-EEEEe---------------------------------CCCCHHHH
Confidence 468999998877888889999999988888873 42110 00001123
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCC
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDIL 308 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~ 308 (532)
.++++.|...++|++++.+.+.... +.+.+.+ .+|+||.+ |++++
T Consensus 54 ~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~~~~--~~iPvV~~----~~~~~ 98 (291)
T 3egc_A 54 REAVGQFFERRVDGLILAPSEGEHD----YLRTELP--KTFPIVAV----NRELR 98 (291)
T ss_dssp HHHHHHHHHTTCSEEEECCCSSCCH----HHHHSSC--TTSCEEEE----SSCCC
T ss_pred HHHHHHHHHCCCCEEEEeCCCCChH----HHHHhhc--cCCCEEEE----ecccC
Confidence 4678888999999999999876322 2233322 35778754 55554
No 31
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=88.15 E-value=15 Score=35.17 Aligned_cols=181 Identities=15% Similarity=0.144 Sum_probs=99.3
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccH
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTV 253 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~ 253 (532)
+.+||++...-.-|-...++.++...+..+|+. +.-.. +.......
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~~---------------------------------~~~~~~~~ 47 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAK-VFVQS---------------------------------ANGNEETQ 47 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCE-EEEEE---------------------------------CTTCHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCE-EEEEC---------------------------------CCCCHHHH
Confidence 458999998888899999999999999888873 32100 00001123
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCC--CccCChhhHHHHHHHHHHHHH
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLM--DKTFGFDTAVEEAQRAINSAY 331 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~t--D~SfGFdTAv~~a~~aI~~a~ 331 (532)
.++++.+...++|++++.+-+.+.. ....+.+++. +|+||.+ |++++.. +.++++|-. +.+..+.+.+.
T Consensus 48 ~~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~--~iPvV~~----~~~~~~~~~~~~V~~D~~-~~g~~a~~~L~ 118 (313)
T 3m9w_A 48 MSQIENMINRGVDVLVIIPYNGQVL--SNVVKEAKQE--GIKVLAY----DRMINDADIDFYISFDNE-KVGELQAKALV 118 (313)
T ss_dssp HHHHHHHHHTTCSEEEEECSSTTSC--HHHHHHHHTT--TCEEEEE----SSCCTTSCCSEEEEECHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCChhhh--HHHHHHHHHC--CCeEEEE----CCcCCCCCceEEEecCHH-HHHHHHHHHHH
Confidence 4677888889999999999876531 1122333333 5778765 5555433 346666642 22222333322
Q ss_pred HhhhhccccEEEEEe-cC------CCccHHHHHHhHhcCCccEEEcCCC---CCCCCChhHHHHHHHHHHhcc---CceE
Q 009559 332 IEAHSAYHGIGIVKL-MG------RSSGYIAMHASLASGQIDICLIPES---PFNLHGPNGVLRHLKYLIETK---GSAV 398 (532)
Q Consensus 332 ~eA~S~~~~V~vVev-MG------R~sG~LA~~aaLAsg~ad~~LIPE~---pf~leg~~~ll~~lk~~~~~k---g~~V 398 (532)
.+ .. +++|+++-- .+ |..||..+...... ..++.++++. .++ .+.-.+.+++.++.. --+|
T Consensus 119 ~~-~G-~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~ai 192 (313)
T 3m9w_A 119 DI-VP-QGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVD-SGKIKVVGDQWVDGWL---PENALKIMENALTANNNKIDAV 192 (313)
T ss_dssp HH-CS-SEEEEEEESCTTCHHHHHHHHHHHHHHHHHHH-TTSEEEEEEEECGGGC---HHHHHHHHHHHHHHTTTCCCEE
T ss_pred Hh-CC-CCcEEEEECCCCCccHHHHHHHHHHHHHhhcc-CCCEEEEeeccCCCcC---HHHHHHHHHHHHHhCCCCeeEE
Confidence 11 22 456777642 22 45566655443321 1345444332 222 234556677777653 2355
Q ss_pred EEeec
Q 009559 399 VCVAE 403 (532)
Q Consensus 399 VVVAE 403 (532)
++.+.
T Consensus 193 ~~~~d 197 (313)
T 3m9w_A 193 VASND 197 (313)
T ss_dssp EESSH
T ss_pred EECCC
Confidence 55443
No 32
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=87.51 E-value=13 Score=35.60 Aligned_cols=120 Identities=6% Similarity=0.007 Sum_probs=71.9
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccC-CccH
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRG-APTV 253 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~-~~~~ 253 (532)
.+||+++..-.-|=...++.++-..+..+|+. ++-+ .+.. ....
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~----------------------------------~~~~~~~~~ 60 (303)
T 3kke_A 16 GTIGLIVPDVNNAVFADMFSGVQMAASGHSTD-VLLG----------------------------------QIDAPPRGT 60 (303)
T ss_dssp -CEEEEESCTTSTTHHHHHHHHHHHHHHTTCC-EEEE----------------------------------ECCSTTHHH
T ss_pred CEEEEEeCCCcChHHHHHHHHHHHHHHHCCCE-EEEE----------------------------------eCCCChHHH
Confidence 46899988877888889999999988888874 3211 0111 1123
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChh--hHHHHHHHHHHHHH
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFD--TAVEEAQRAINSAY 331 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFd--TAv~~a~~aI~~a~ 331 (532)
.++++.|...++|++++.+.+.+.. ..+ +.+.+ +++||.+ |++++.--.++++| .+...+++.+-.
T Consensus 61 ~~~~~~l~~~~vdgiI~~~~~~~~~--~~~-~~l~~---~iPvV~i----~~~~~~~~~~V~~D~~~~g~~a~~~L~~-- 128 (303)
T 3kke_A 61 QQLSRLVSEGRVDGVLLQRREDFDD--DML-AAVLE---GVPAVTI----NSRVPGRVGSVILDDQKGGGIATEHLIT-- 128 (303)
T ss_dssp HHHHHHHHSCSSSEEEECCCTTCCH--HHH-HHHHT---TSCEEEE----SCCCTTCCCEEEECHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhCCCcEEEEecCCCCcH--HHH-HHHhC---CCCEEEE----CCcCCCCCCEEEECcHHHHHHHHHHHHH--
Confidence 4678888999999999999877642 022 33433 5777765 44433211234444 333333333322
Q ss_pred HhhhhccccEEEEE
Q 009559 332 IEAHSAYHGIGIVK 345 (532)
Q Consensus 332 ~eA~S~~~~V~vVe 345 (532)
.. +++|+++-
T Consensus 129 ---~G-~~~I~~i~ 138 (303)
T 3kke_A 129 ---LG-HSRIAFIS 138 (303)
T ss_dssp ---TT-CCSEEEEE
T ss_pred ---CC-CCeEEEEe
Confidence 23 56787774
No 33
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=87.43 E-value=19 Score=33.72 Aligned_cols=123 Identities=7% Similarity=0.047 Sum_probs=67.6
Q ss_pred CcEEEEEeCC--CCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc
Q 009559 174 EVKAAIVTCG--GLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP 251 (532)
Q Consensus 174 ~~kiaIvt~G--G~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~ 251 (532)
..+||+++.. -.-|-...++.++...+..+|++ +.-+. .+ -++ .
T Consensus 19 ~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~-~~~~~--------~~-----~~~--------------------~ 64 (296)
T 3brq_A 19 TQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQ-LLLAD--------GK-----HSA--------------------E 64 (296)
T ss_dssp CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCE-EEEEC--------CT-----TSH--------------------H
T ss_pred CceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCE-EEEEe--------CC-----CCH--------------------H
Confidence 4589999876 56677888999998888888773 32110 00 000 1
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHh-cCCCceEeeeecccccCCCCCCccCChhh--HHHHHHHHHH
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRK-RRMKVAVVGVPKTIDNDILLMDKTFGFDT--AVEEAQRAIN 328 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~k-r~~~I~VIGIPKTIDNDI~~tD~SfGFdT--Av~~a~~aI~ 328 (532)
...+.++.|...++|++++.+.+.+-. .+ +.+.+ . +++||.+-..+++. . -.++++|- +...+++.+.
T Consensus 65 ~~~~~~~~l~~~~vdgii~~~~~~~~~---~~-~~l~~~~--~iPvV~~~~~~~~~--~-~~~V~~d~~~~~~~a~~~l~ 135 (296)
T 3brq_A 65 EERQAIQYLLDLRCDAIMIYPRFLSVD---EI-DDIIDAH--SQPIMVLNRRLRKN--S-SHSVWCDHKQTSFNAVAELI 135 (296)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSSSCHH---HH-HHHHHTC--SSCEEEESCCCSSS--G-GGEECCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEecCCCChH---HH-HHHHhcC--CCCEEEEccccCCC--C-CCEEEEchHHHHHHHHHHHH
Confidence 123567778889999999998865422 22 33444 3 46677653333221 1 12455553 3333333322
Q ss_pred HHHHhhhhccccEEEEE
Q 009559 329 SAYIEAHSAYHGIGIVK 345 (532)
Q Consensus 329 ~a~~eA~S~~~~V~vVe 345 (532)
. .. +++|+++-
T Consensus 136 ~-----~G-~~~I~~i~ 146 (296)
T 3brq_A 136 N-----AG-HQEIAFLT 146 (296)
T ss_dssp H-----TT-CCSEEEEC
T ss_pred H-----CC-CceEEEEc
Confidence 2 13 56787774
No 34
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=87.34 E-value=17 Score=33.57 Aligned_cols=171 Identities=18% Similarity=0.171 Sum_probs=89.9
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHH
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVS 254 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~ 254 (532)
++||++...-.-|-...+++++...+.++|++ +.-+. .+ +........
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~-~~~~~---------------~~----------------~~~~~~~~~ 48 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEAGVT-LLHRS---------------TK----------------DDGDIAGQI 48 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHHTCE-EEECC---------------CS----------------STTCHHHHH
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHcCCE-EEEEC---------------CC----------------CCCCHHHHH
Confidence 48999999888899999999999999888873 42100 00 000011223
Q ss_pred HHHHHHHHhC-CcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCC--ccCChhh--HHHHHHHHHHH
Q 009559 255 EIVDSMEERG-INMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMD--KTFGFDT--AVEEAQRAINS 329 (532)
Q Consensus 255 ~ivd~L~~~g-Id~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD--~SfGFdT--Av~~a~~aI~~ 329 (532)
+.++.|.+.+ +|++++.+-+.+.. ....+.+.+. +++||.+ |++.+..+ .++++|- +...+++.+..
T Consensus 49 ~~i~~l~~~~~vdgii~~~~~~~~~--~~~~~~~~~~--~ipvV~~----~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~ 120 (276)
T 3ksm_A 49 QILSYHLSQAPPDALILAPNSAEDL--TPSVAQYRAR--NIPVLVV----DSDLAGDAHQGLVATDNYAAGQLAARALLA 120 (276)
T ss_dssp HHHHHHHHHSCCSEEEECCSSTTTT--HHHHHHHHHT--TCCEEEE----SSCCSSSCSSEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEeCCCHHHH--HHHHHHHHHC--CCcEEEE----ecCCCCCCcceEEccCHHHHHHHHHHHHHH
Confidence 5678888888 99999998653221 1122333333 4677765 44443322 2344443 33333333332
Q ss_pred HHHhhh-hccccEEEEEec-C------CCccHHHHHHhHhcC-CccEEEcCCCCCCCCChhHHHHHHHHHHhcc
Q 009559 330 AYIEAH-SAYHGIGIVKLM-G------RSSGYIAMHASLASG-QIDICLIPESPFNLHGPNGVLRHLKYLIETK 394 (532)
Q Consensus 330 a~~eA~-S~~~~V~vVevM-G------R~sG~LA~~aaLAsg-~ad~~LIPE~pf~leg~~~ll~~lk~~~~~k 394 (532)
. .. .-+++|+++--. + |..||.. +++.. ...+..+....++ .+.-.+.+++.++..
T Consensus 121 ~---~~~~G~~~i~~i~~~~~~~~~~~R~~gf~~---~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~ 185 (276)
T 3ksm_A 121 T---LDLSKERNIALLRLRAGNASTDQREQGFLD---VLRKHDKIRIIAAPYAGDD---RGAARSEMLRLLKET 185 (276)
T ss_dssp H---SCTTSCEEEEECBCCTTCHHHHHHHHHHHH---HHTTCTTEEEEECCBCCSS---HHHHHHHHHHHHHHC
T ss_pred h---cCcCCCceEEEEEcCCCchhHHHHHHHHHH---HHHhCCCcEEEEEecCCCc---HHHHHHHHHHHHHhC
Confidence 1 11 024567665321 1 2334443 33332 2344433333343 335556677777654
No 35
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=87.18 E-value=20 Score=33.84 Aligned_cols=174 Identities=11% Similarity=0.146 Sum_probs=92.9
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccH
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTV 253 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~ 253 (532)
+.+||+++..-.-|=...++.++-..+..+|++ ++-+ + + ......
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~--------~-------------------------~-~~~~~~ 46 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKI--------A-------------------------V-PDGEKT 46 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHHTEE-EEEE--------E-------------------------C-CSHHHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHcCCE-EEEe--------C-------------------------C-CCHHHH
Confidence 578999998887888889999999888888763 3210 0 0 001123
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCC-------CccCChhh--HHHHHH
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLM-------DKTFGFDT--AVEEAQ 324 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~t-------D~SfGFdT--Av~~a~ 324 (532)
.+.++.+...++|++++.+-+.... ..+.+.+.+. +|+||.+ |++.+.. ..+++.|- +...++
T Consensus 47 ~~~i~~l~~~~vdgiii~~~~~~~~--~~~~~~~~~~--~iPvV~~----~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~ 118 (306)
T 8abp_A 47 LNAIDSLAASGAKGFVICTPDPKLG--SAIVAKARGY--DMKVIAV----DDQFVNAKGKPMDTVPLVMLAATKIGERQG 118 (306)
T ss_dssp HHHHHHHHHTTCCEEEEECSCGGGH--HHHHHHHHHT--TCEEEEE----SSCCBCTTSCBCTTSCEEEECHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCchhh--HHHHHHHHHC--CCcEEEe----CCCCCCccccccccccEEecChhHHHHHHH
Confidence 4567888889999999999876532 2222334444 4777754 4332211 12344442 233333
Q ss_pred HHHH-HHHHhhhhccccEEEEEe--------cCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhcc
Q 009559 325 RAIN-SAYIEAHSAYHGIGIVKL--------MGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETK 394 (532)
Q Consensus 325 ~aI~-~a~~eA~S~~~~V~vVev--------MGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~k 394 (532)
+.+- .+.-... ...+|+++-. .-|..||..+.....-....++.+.+..++. +.-.+.+++.++.+
T Consensus 119 ~~l~~~~g~~~~-~~~~i~~~~~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~ 193 (306)
T 8abp_A 119 QELYKEMQKRGW-DVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDI---PGAFDAANSMLVQH 193 (306)
T ss_dssp HHHHHHHHHHTC-CGGGEEEEEEECTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECSSSSH---HHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCC-CccceEEEEecCCCChHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCCh---HHHHHHHHHHHHhC
Confidence 3332 2111110 1126777642 1355677665443211113444444444443 34556677777654
No 36
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=87.07 E-value=1 Score=45.38 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=35.1
Q ss_pred HHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhc--CCCceEeeeecccccCCC
Q 009559 255 EIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKR--RMKVAVVGVPKTIDNDIL 308 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr--~~~I~VIGIPKTIDNDI~ 308 (532)
++++.+...+.|.++++|||||+..+..- +.++ +.++++..||.==-||+.
T Consensus 73 ~~~~~~~~~~~d~vvv~GGDGTl~~v~~~---l~~~~~~~~~plgiiP~Gt~N~fa 125 (332)
T 2bon_A 73 RYVEEARKFGVATVIAGGGDGTINEVSTA---LIQCEGDDIPALGILPLGTANDFA 125 (332)
T ss_dssp HHHHHHHHHTCSEEEEEESHHHHHHHHHH---HHHCCSSCCCEEEEEECSSSCHHH
T ss_pred HHHHHHHhcCCCEEEEEccchHHHHHHHH---HhhcccCCCCeEEEecCcCHHHHH
Confidence 33444445689999999999999765432 2222 457888889986667764
No 37
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=86.82 E-value=9.9 Score=35.86 Aligned_cols=183 Identities=12% Similarity=-0.007 Sum_probs=100.2
Q ss_pred CCcEEEEEeCCC-CcchHHHHHHHHHHHHHHc-CCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC
Q 009559 173 EEVKAAIVTCGG-LCPGLNDVIRHIVITLEIY-GVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA 250 (532)
Q Consensus 173 ~~~kiaIvt~GG-~cPGlNavIr~iv~~l~~y-gv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~ 250 (532)
+..+||+++..- .-|=...++.++...+..+ |+. +.-... ..+...
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~-~~~~~~-------------------------------~~~~~~ 54 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFN-ISANIT-------------------------------HYDPYD 54 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGC-EEEEEE-------------------------------EECSSC
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCC-eEEEEE-------------------------------cCCCCC
Confidence 346799998877 7888899999999888776 553 211000 000001
Q ss_pred -ccHHHHHHHHHHhCCcEEEEeCChhhH-HHHHHHHHHHHhcCCCceEeeeecccccCCCCC--CccCChhh--HHHHHH
Q 009559 251 -PTVSEIVDSMEERGINMLFVLGGNGTH-AGANAIHNECRKRRMKVAVVGVPKTIDNDILLM--DKTFGFDT--AVEEAQ 324 (532)
Q Consensus 251 -~~~~~ivd~L~~~gId~L~vIGGdGT~-~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~t--D~SfGFdT--Av~~a~ 324 (532)
....++++.|...++|++++.+-+... .. +.+.+.+. +|+||.+ |++++.. ..++++|- +...++
T Consensus 55 ~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~---~~~~~~~~--~iPvV~~----~~~~~~~~~~~~V~~D~~~~g~~a~ 125 (304)
T 3gbv_A 55 YNSFVATSQAVIEEQPDGVMFAPTVPQYTKG---FTDALNEL--GIPYIYI----DSQIKDAPPLAFFGQNSHQSGYFAA 125 (304)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECCSSGGGTHH---HHHHHHHH--TCCEEEE----SSCCTTSCCSEEEECCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCChHHHHH---HHHHHHHC--CCeEEEE----eCCCCCCCceEEEecChHHHHHHHH
Confidence 122456788888999999999987642 22 12333333 4677754 4544432 23445443 333333
Q ss_pred HHHHHHHHhhhhccccEEEEEe-----------cCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhc
Q 009559 325 RAINSAYIEAHSAYHGIGIVKL-----------MGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIET 393 (532)
Q Consensus 325 ~aI~~a~~eA~S~~~~V~vVev-----------MGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~ 393 (532)
+.+... .. -.++|+++-. .-|..||..+.....-. .+...+.+..++.+ .-.+.+++.++.
T Consensus 126 ~~l~~~---g~-~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~-~~~~~~~~~~~~~~---~~~~~~~~~l~~ 197 (304)
T 3gbv_A 126 RMLMLL---AV-NDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPA-CNILELNLHADLNI---EDSRMLDDFFRE 197 (304)
T ss_dssp HHHHHH---ST-TCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTT-SEEEEEEEESSCSS---CHHHHHHHHHHH
T ss_pred HHHHHH---hC-CCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCC-cEEEEeeecCCCHH---HHHHHHHHHHHh
Confidence 333321 11 1267877752 33666777655443222 44554444455554 345566666664
Q ss_pred c--CceEEEeecc
Q 009559 394 K--GSAVVCVAEG 404 (532)
Q Consensus 394 k--g~~VVVVAEG 404 (532)
. --+|++.+..
T Consensus 198 ~~~~~ai~~~~d~ 210 (304)
T 3gbv_A 198 HPDVKHGITFNSK 210 (304)
T ss_dssp CTTCCEEEESSSC
T ss_pred CCCeEEEEEcCcc
Confidence 3 3466665544
No 38
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=86.15 E-value=22 Score=33.24 Aligned_cols=176 Identities=14% Similarity=0.110 Sum_probs=89.7
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHH
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVS 254 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~ 254 (532)
.+||++...-.-|-...++.++-+.+..+|+. ++-. ..+. +. ..-.
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~-~~~~--------~~~~-----~~--------------------~~~~ 47 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYN-LVVL--------DSQN-----NP--------------------AKEL 47 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCE-EEEE--------ECTT-----CH--------------------HHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcE-EEEe--------CCCC-----CH--------------------HHHH
Confidence 46899987777788888999998888888873 3211 0000 00 0113
Q ss_pred HHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCC--ccCChhh--HHHHHHHHHHHH
Q 009559 255 EIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMD--KTFGFDT--AVEEAQRAINSA 330 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD--~SfGFdT--Av~~a~~aI~~a 330 (532)
+.++.+...++|++++.+.+.... ..+.+++.+. +++||.+ |++.+..+ .+++.|- +...+++.+-.
T Consensus 48 ~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~--~iPvV~i----~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~- 118 (271)
T 2dri_A 48 ANVQDLTVRGTKILLINPTDSDAV--GNAVKMANQA--NIPVITL----DRQATKGEVVSHIASDNVLGGKIAGDYIAK- 118 (271)
T ss_dssp HHHHHHTTTTEEEEEECCSSTTTT--HHHHHHHHHT--TCCEEEE----SSCCSSSCCSEEEEECHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHcCCCEEEEeCCChHHH--HHHHHHHHHC--CCcEEEe----cCCCCCCceeEEEecChHHHHHHHHHHHHH-
Confidence 456777778999999987654311 1122334443 4667754 55444322 2466553 33333333322
Q ss_pred HHhhhhccccEEEEEe-c------CCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccC--ceEEEe
Q 009559 331 YIEAHSAYHGIGIVKL-M------GRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKG--SAVVCV 401 (532)
Q Consensus 331 ~~eA~S~~~~V~vVev-M------GR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg--~~VVVV 401 (532)
.... +++|+++-- . -|..||..+.... | ..+..+-...++. +.-.+.+++.++.+. -+|++.
T Consensus 119 --~g~g-~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~--g-~~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~ai~~~ 189 (271)
T 2dri_A 119 --KAGE-GAKVIELQGIAGTSAARERGEGFQQAVAAH--K-FNVLASQPADFDR---IKGLNVMQNLLTAHPDVQAVFAQ 189 (271)
T ss_dssp --HHCT-TCEEEEEECCTTCHHHHHHHHHHHHHHHHH--T-CEEEEEEECTTCH---HHHHHHHHHHHHHCTTCCEEEES
T ss_pred --HcCC-CCeEEEEECCCCCccHhHHHHHHHHHHhcC--C-CEEEEecCCCCCH---HHHHHHHHHHHHhCCCccEEEEC
Confidence 1111 356877752 1 2445666544331 3 3332221223332 233455566665432 355544
Q ss_pred e
Q 009559 402 A 402 (532)
Q Consensus 402 A 402 (532)
+
T Consensus 190 n 190 (271)
T 2dri_A 190 N 190 (271)
T ss_dssp S
T ss_pred C
Confidence 4
No 39
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=84.86 E-value=24 Score=32.57 Aligned_cols=174 Identities=14% Similarity=0.144 Sum_probs=93.0
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHH
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVS 254 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~ 254 (532)
-+||++...-.-|=...++.++...+..+|+. +.-+. +........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~~---------------------------------~~~~~~~~~ 48 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQ-LLIAS---------------------------------SDDQPDSER 48 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCE-EEEEE---------------------------------CTTCHHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCE-EEEEe---------------------------------CCCCHHHHH
Confidence 47899998888888999999999998888873 42110 000011234
Q ss_pred HHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCC-ccCChhhHHHHHHHHHHHHHHh
Q 009559 255 EIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMD-KTFGFDTAVEEAQRAINSAYIE 333 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD-~SfGFdTAv~~a~~aI~~a~~e 333 (532)
+.++.+...++|++++.+.+.... ...+.+++. +++||. +|++++..+ .++++|-. +.+..+.+.+..
T Consensus 49 ~~~~~l~~~~vdgiIi~~~~~~~~---~~~~~~~~~--~iPvV~----~~~~~~~~~~~~V~~d~~-~~~~~a~~~L~~- 117 (272)
T 3o74_A 49 QLQQLFRARRCDALFVASCLPPED---DSYRELQDK--GLPVIA----IDRRLDPAHFCSVISDDR-DASRQLAASLLS- 117 (272)
T ss_dssp HHHHHHHHTTCSEEEECCCCCSSC---CHHHHHHHT--TCCEEE----ESSCCCTTTCEEEEECHH-HHHHHHHHHHHT-
T ss_pred HHHHHHHHcCCCEEEEecCccccH---HHHHHHHHc--CCCEEE----EccCCCccccCEEEEchH-HHHHHHHHHHHH-
Confidence 677888899999999998873311 122334444 466774 455554322 23444422 122222232221
Q ss_pred hhhccccEEEEEecC-------CCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccC---ceEEEe
Q 009559 334 AHSAYHGIGIVKLMG-------RSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKG---SAVVCV 401 (532)
Q Consensus 334 A~S~~~~V~vVevMG-------R~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg---~~VVVV 401 (532)
. -+++|+++--.- |..||.. ++.....+...+....++. +.-.+.+++.++... -+|++.
T Consensus 118 -~-G~~~i~~i~~~~~~~~~~~R~~gf~~---~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~ai~~~ 187 (272)
T 3o74_A 118 -S-APRSIALIGARPELSVSQARAGGFDE---ALQGYTGEVRRYQGEAFSR---ECGQRLMQQLIDDLGGLPDALVTT 187 (272)
T ss_dssp -T-CCSEEEEEEECTTSHHHHHHHHHHHH---HTTTCCSEEEEEEESSSSH---HHHHHHHHHHHHHHTSCCSEEEES
T ss_pred -C-CCcEEEEEecCCCCccHHHHHHHHHH---HHHHcCCChheeecCCCCH---HHHHHHHHHHHhcCCCCCcEEEEe
Confidence 2 256787774322 2334443 2332224444333333443 345566676666433 355443
No 40
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=84.59 E-value=24 Score=33.69 Aligned_cols=86 Identities=12% Similarity=0.098 Sum_probs=55.0
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC-cc
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA-PT 252 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~-~~ 252 (532)
..+||+++..-..|-...++.++-..+..+|+. +.-. .+... ..
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~-l~~~----------------------------------~~~~~~~~ 46 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKRGIT-LKIA----------------------------------DGQQKQEN 46 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHHTCE-EEEE----------------------------------ECTTCHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCE-EEEe----------------------------------CCCCCHHH
Confidence 368999998877788888889998888888873 3210 00001 11
Q ss_pred HHHHHHHHHHhCCcEEEEeCChhhH-HHHHHHHHHHHhcCCCceEeee
Q 009559 253 VSEIVDSMEERGINMLFVLGGNGTH-AGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGdGT~-~gA~~L~ee~~kr~~~I~VIGI 299 (532)
..+.++.|...++|++++.+.+.+. .. ..+.+.+. +++||.+
T Consensus 47 ~~~~i~~l~~~~vdgiIi~~~~~~~~~~---~~~~~~~~--~iPvV~~ 89 (306)
T 2vk2_A 47 QIKAVRSFVAQGVDAIFIAPVVATGWEP---VLKEAKDA--EIPVFLL 89 (306)
T ss_dssp HHHHHHHHHHHTCSEEEECCSSSSSCHH---HHHHHHHT--TCCEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCChhhHHH---HHHHHHHC--CCCEEEe
Confidence 2356777888999999999877531 11 12333333 4677755
No 41
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=84.24 E-value=26 Score=32.47 Aligned_cols=124 Identities=10% Similarity=0.112 Sum_probs=69.6
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc-cH
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP-TV 253 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~-~~ 253 (532)
.+||+++..-.-|-...++.++-..+..+|+. +.- . .+.... ..
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~-~~~---------------~-------------------~~~~~~~~~ 48 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQ-LLL---------------G-------------------YSDYSIEQE 48 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCE-ECC---------------E-------------------ECTTCHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHCCCE-EEE---------------E-------------------cCCCCHHHH
Confidence 47899987777788888889988888888773 310 0 001111 12
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHHHHHh
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIE 333 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~a~~e 333 (532)
.+.++.+...++|++++.+.+.+-. +.+.+++. +++||.+=..+++ +. -.++++|-. +.+..+.+.+..
T Consensus 49 ~~~~~~l~~~~vdgii~~~~~~~~~----~~~~l~~~--~iPvV~~~~~~~~--~~-~~~V~~d~~-~~~~~a~~~L~~- 117 (275)
T 3d8u_A 49 EKLLSTFLESRPAGVVLFGSEHSQR----THQLLEAS--NTPVLEIAELSSK--AS-YLNIGVDHF-EVGKACTRHLIE- 117 (275)
T ss_dssp HHHHHHHHTSCCCCEEEESSCCCHH----HHHHHHHH--TCCEEEESSSCSS--SS-SEEECBCHH-HHHHHHHHHHHT-
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHH----HHHHHHhC--CCCEEEEeeccCC--CC-CCEEEEChH-HHHHHHHHHHHH-
Confidence 3567788889999999998775432 22333333 4677765332222 11 135566532 122223333221
Q ss_pred hhhccccEEEEEe
Q 009559 334 AHSAYHGIGIVKL 346 (532)
Q Consensus 334 A~S~~~~V~vVev 346 (532)
.. +++|+++--
T Consensus 118 -~G-~~~i~~i~~ 128 (275)
T 3d8u_A 118 -QG-FKNVGFIGA 128 (275)
T ss_dssp -TT-CCCEEEEEC
T ss_pred -CC-CCeEEEEcC
Confidence 13 567877753
No 42
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=83.85 E-value=30 Score=32.76 Aligned_cols=123 Identities=15% Similarity=0.193 Sum_probs=70.8
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC-cc
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA-PT 252 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~-~~ 252 (532)
..+||++...-.-|-...++.++...+..+|+. +.-+ . +... ..
T Consensus 16 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~--------~--------------------------~~~~~~~ 60 (289)
T 2fep_A 16 TTTVGVIIPDISSIFYSELARGIEDIATMYKYN-IILS--------N--------------------------SDQNMEK 60 (289)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE-EEEE--------E--------------------------CTTCHHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCE-EEEE--------e--------------------------CCCCHHH
Confidence 357899987766788888999998888888873 3210 0 0001 12
Q ss_pred HHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChh--hHHHHHHHHHHHH
Q 009559 253 VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFD--TAVEEAQRAINSA 330 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFd--TAv~~a~~aI~~a 330 (532)
..+.++.|...++|++++.+.+.+... + +++.+. +++||.+=..++++ . -.++++| .+...+++.+-.
T Consensus 61 ~~~~~~~l~~~~vdgiIi~~~~~~~~~---~-~~l~~~--~iPvV~~~~~~~~~--~-~~~V~~D~~~~g~~a~~~L~~- 130 (289)
T 2fep_A 61 ELHLLNTMLGKQVDGIVFMGGNITDEH---V-AEFKRS--PVPIVLAASVEEQE--E-TPSVAIDYEQAIYDAVKLLVD- 130 (289)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCCCHHH---H-HHHHHS--SSCEEEESCCCTTC--C-SCEEECCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCCCEEEEecCCCCHHH---H-HHHHhc--CCCEEEEccccCCC--C-CCEEEECcHHHHHHHHHHHHH-
Confidence 245677888899999999987654222 2 333333 46777653333221 1 1245544 334444443332
Q ss_pred HHhhhhccccEEEEEe
Q 009559 331 YIEAHSAYHGIGIVKL 346 (532)
Q Consensus 331 ~~eA~S~~~~V~vVev 346 (532)
.. +++|+++--
T Consensus 131 ----~G-~~~I~~i~~ 141 (289)
T 2fep_A 131 ----KG-HTDIAFVSG 141 (289)
T ss_dssp ----TT-CSSEEEEES
T ss_pred ----CC-CCeEEEEeC
Confidence 13 567887753
No 43
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=83.69 E-value=0.57 Score=47.04 Aligned_cols=34 Identities=32% Similarity=0.635 Sum_probs=24.3
Q ss_pred HhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeee
Q 009559 262 ERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVP 300 (532)
Q Consensus 262 ~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIP 300 (532)
..+.|.++++|||||+..|...... .+++++||+
T Consensus 73 ~~~~d~vi~~GGDGT~l~a~~~~~~-----~~~pvlgi~ 106 (307)
T 1u0t_A 73 ADGCELVLVLGGDGTFLRAAELARN-----ASIPVLGVN 106 (307)
T ss_dssp ---CCCEEEEECHHHHHHHHHHHHH-----HTCCEEEEE
T ss_pred ccCCCEEEEEeCCHHHHHHHHHhcc-----CCCCEEEEe
Confidence 3578999999999999776654322 257899997
No 44
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=83.61 E-value=17 Score=34.16 Aligned_cols=117 Identities=9% Similarity=0.032 Sum_probs=70.1
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCce-EEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC-c
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKN-IVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA-P 251 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~-V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~-~ 251 (532)
..+||+++..-.-|-...++.++-..+..+|+ + ++-. . +... .
T Consensus 10 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~-~~~~~~--------~--------------------------~~~~~~ 54 (277)
T 3hs3_A 10 SKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGY-TALISF--------S--------------------------TNSDVK 54 (277)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTC-EEEEEE--------C--------------------------SSCCHH
T ss_pred CCEEEEEeCCCCChhHHHHHHHHHHHHHHCCC-CEEEEE--------e--------------------------CCCChH
Confidence 45799999887788888999999998888888 4 3210 0 0101 1
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccC-CCCCCccCChhhHHHHHHHHHHHH
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDND-ILLMDKTFGFDTAVEEAQRAINSA 330 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDND-I~~tD~SfGFdTAv~~a~~aI~~a 330 (532)
...++++.|...++|++++.+ . .+ +++ ...+++||.+ |++ ++..+.++++|-. +.+..+.+.+
T Consensus 55 ~~~~~~~~l~~~~vdgiIi~~--~------~~-~~~--~~~~iPvV~~----~~~~~~~~~~~V~~D~~-~~g~~a~~~L 118 (277)
T 3hs3_A 55 KYQNAIINFENNNVDGIITSA--F------TI-PPN--FHLNTPLVMY----DSANINDDIVRIVSNNT-KGGKESIKLL 118 (277)
T ss_dssp HHHHHHHHHHHTTCSEEEEEC--C------CC-CTT--CCCSSCEEEE----SCCCCCSSSEEEEECHH-HHHHHHHHTS
T ss_pred HHHHHHHHHHhCCCCEEEEcc--h------HH-HHH--HhCCCCEEEE----cccccCCCCEEEEEChH-HHHHHHHHHH
Confidence 234568888999999999998 1 11 222 2235777754 555 5432225565542 2223333333
Q ss_pred HHhhhhccccEEEEE
Q 009559 331 YIEAHSAYHGIGIVK 345 (532)
Q Consensus 331 ~~eA~S~~~~V~vVe 345 (532)
. .. +++|+++-
T Consensus 119 ~---~G-~~~I~~i~ 129 (277)
T 3hs3_A 119 S---KK-IEKVLIQH 129 (277)
T ss_dssp C---TT-CCEEEEEE
T ss_pred H---hC-CCEEEEEe
Confidence 2 23 56787774
No 45
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=83.34 E-value=36 Score=33.38 Aligned_cols=171 Identities=12% Similarity=0.108 Sum_probs=89.2
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC-ccH
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA-PTV 253 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~-~~~ 253 (532)
.+||++...-.-|-...++.++-..+..+|+. ++-+. +... ...
T Consensus 67 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~~----------------------------------~~~~~~~~ 111 (348)
T 3bil_A 67 NTIGVIVPSLINHYFAAMVTEIQSTASKAGLA-TIITN----------------------------------SNEDATTM 111 (348)
T ss_dssp -CEEEEESCSSSHHHHHHHHHHHHHHHHTTCC-EEEEE----------------------------------CTTCHHHH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCE-EEEEe----------------------------------CCCCHHHH
Confidence 46999987766777788888888888888873 32100 0000 112
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChh--hHHHHHHHHHHHHH
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFD--TAVEEAQRAINSAY 331 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFd--TAv~~a~~aI~~a~ 331 (532)
.++++.|...++|++++.+.+.+-. ..+.+.+. +++||.+=..++++. --.++++| .+...+++.+-.
T Consensus 112 ~~~~~~l~~~~vdgiI~~~~~~~~~----~~~~l~~~--~iPvV~i~~~~~~~~--~~~~V~~D~~~~~~~a~~~L~~-- 181 (348)
T 3bil_A 112 SGSLEFLTSHGVDGIICVPNEECAN----QLEDLQKQ--GMPVVLVDRELPGDS--TIPTATSNPQPGIAAAVELLAH-- 181 (348)
T ss_dssp HHHHHHHHHTTCSCEEECCCGGGHH----HHHHHHHC---CCEEEESSCCSCC---CCCEEEEECHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhCCCCEEEEeCCCCChH----HHHHHHhC--CCCEEEEcccCCCCC--CCCEEEeChHHHHHHHHHHHHH--
Confidence 3567788889999999999876532 22334443 466776533332201 11245544 333444433332
Q ss_pred HhhhhccccEEEEEec-C------CCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccCceEEE
Q 009559 332 IEAHSAYHGIGIVKLM-G------RSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVVC 400 (532)
Q Consensus 332 ~eA~S~~~~V~vVevM-G------R~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg~~VVV 400 (532)
.. +++|+++--. + |..||..+.....- +.++++ +..++. +.-.+.+++.++...-+|++
T Consensus 182 ---~G-~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~-~~~~v~--~~~~~~---~~~~~~~~~ll~~~~~ai~~ 247 (348)
T 3bil_A 182 ---NN-ALPIGYLSGPMDTSTGRERLEDFKAACANSKI-GEQLVF--LGGYEQ---SVGFEGATKLLDQGAKTLFA 247 (348)
T ss_dssp ---TT-CCSEEEECCCTTSHHHHHHHHHHHHHHHHTTC-CCCEEE--CCCSSH---HHHHHHHHHHHHTTCSEEEE
T ss_pred ---CC-CCeEEEEeCCCCCccHHHHHHHHHHHHHHcCc-CccEEE--cCCCCH---HHHHHHHHHHHcCCCCEEEE
Confidence 13 5678877432 1 34466654332211 234433 233443 23445666666643224433
No 46
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=82.20 E-value=1.2 Score=44.86 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=36.4
Q ss_pred HHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCC
Q 009559 255 EIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDIL 308 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~ 308 (532)
++++.+...+.|.++++|||||+..+.. .+.+.+.++++.+||.==-||+.
T Consensus 71 ~~~~~~~~~~~d~vvv~GGDGTv~~v~~---~l~~~~~~~pl~iIP~GT~N~lA 121 (337)
T 2qv7_A 71 LEAERAMHENYDVLIAAGGDGTLNEVVN---GIAEKPNRPKLGVIPMGTVNDFG 121 (337)
T ss_dssp HHHHHHTTTTCSEEEEEECHHHHHHHHH---HHTTCSSCCEEEEEECSSCCHHH
T ss_pred HHHHHHhhcCCCEEEEEcCchHHHHHHH---HHHhCCCCCcEEEecCCcHhHHH
Confidence 3444444568899999999999976543 22223567899999987778875
No 47
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=82.05 E-value=33 Score=31.97 Aligned_cols=170 Identities=12% Similarity=0.029 Sum_probs=88.1
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccH
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTV 253 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~ 253 (532)
..+||+++..-.-|=...++.++...+.++|+. +.-+. +. .....
T Consensus 5 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~~---------------------------------~~-~~~~~ 49 (280)
T 3gyb_A 5 TQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYR-LSVID---------------------------------SL-TSQAG 49 (280)
T ss_dssp CCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCE-EEEEC---------------------------------SS-SSCSS
T ss_pred cCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCE-EEEEe---------------------------------CC-CchHH
Confidence 457999998888888899999999988888873 42111 00 11112
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCC-CCC-CccCChhhHHHHHHHHHHHHH
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDI-LLM-DKTFGFDTAVEEAQRAINSAY 331 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI-~~t-D~SfGFdTAv~~a~~aI~~a~ 331 (532)
.++++.|...++|+++ ++.+.+.. .+.+ .+|+||.+ |++. ... -.++++|-. +.+..+.+.+.
T Consensus 50 ~~~~~~l~~~~vdgiI-~~~~~~~~---~~~~------~~iPvV~~----~~~~~~~~~~~~V~~D~~-~~g~~a~~~L~ 114 (280)
T 3gyb_A 50 TDPITSALSMRPDGII-IAQDIPDF---TVPD------SLPPFVIA----GTRITQASTHDSVANDDF-RGAEIATKHLI 114 (280)
T ss_dssp SCHHHHHHTTCCSEEE-EESCC-----------------CCCEEEE----SCCCSSSCSTTEEEECHH-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEE-ecCCCChh---hHhh------cCCCEEEE----CCCCCCCCCCCEEEechH-HHHHHHHHHHH
Confidence 3566778889999999 88776522 2221 35777754 4444 111 134454432 22222323222
Q ss_pred HhhhhccccEEEEEecC-----CCccHHHHHHhHhcCCccEE-EcCCCCCCCCChhHHHHHHHHHHhccC--ceEEEee
Q 009559 332 IEAHSAYHGIGIVKLMG-----RSSGYIAMHASLASGQIDIC-LIPESPFNLHGPNGVLRHLKYLIETKG--SAVVCVA 402 (532)
Q Consensus 332 ~eA~S~~~~V~vVevMG-----R~sG~LA~~aaLAsg~ad~~-LIPE~pf~leg~~~ll~~lk~~~~~kg--~~VVVVA 402 (532)
. .. +++|.++--.. |..||..+.... + .+.. .+-+..++ .+.-.+.+++.++... -+|++.+
T Consensus 115 ~--~G-~~~i~~i~~~~~~~~~R~~gf~~~l~~~--~-~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~ai~~~~ 184 (280)
T 3gyb_A 115 D--LG-HTHIAHLRVGSGAGLRRFESFEATMRAH--G-LEPLSNDYLGPAV---EHAGYTETLALLKEHPEVTAIFSSN 184 (280)
T ss_dssp H--TT-CCSEEEECCSSHHHHHHHHHHHHHHHHT--T-CCCEECCCCSCCC---HHHHHHHHHHHHHHCTTCCEEEESS
T ss_pred H--CC-CCeEEEEeCCCchHHHHHHHHHHHHHHc--C-cCCCcccccCCCC---HHHHHHHHHHHHhCCCCCCEEEECC
Confidence 1 12 46687775432 455665543322 2 2222 12222233 2345566677666542 3554443
No 48
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=81.25 E-value=37 Score=31.99 Aligned_cols=87 Identities=13% Similarity=0.057 Sum_probs=54.4
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCC-ceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc-c
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGV-KNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP-T 252 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv-~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~-~ 252 (532)
.+||+++..-.-|-...++.++...+..+|+ + +.-+ .+.... .
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~-~~~~----------------------------------~~~~~~~~ 47 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQ-LLMN----------------------------------DSQNDQSK 47 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEE-EEEE----------------------------------ECTTCHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeE-EEEe----------------------------------cCCCCHHH
Confidence 4789998777778888888888888877774 3 2100 011111 1
Q ss_pred HHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeee
Q 009559 253 VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVP 300 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIP 300 (532)
..+.++.+...++|++++.+.+.+.. ..+.+++++. +++||.+-
T Consensus 48 ~~~~~~~~~~~~vdgiii~~~~~~~~--~~~~~~~~~~--~iPvV~~~ 91 (309)
T 2fvy_A 48 QNDQIDVLLAKGVKALAINLVDPAAA--GTVIEKARGQ--NVPVVFFN 91 (309)
T ss_dssp HHHHHHHHHHTTCSEEEECCSSGGGH--HHHHHHHHTT--TCCEEEES
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcchh--HHHHHHHHHC--CCcEEEec
Confidence 23567788889999999998776521 1122344433 46777653
No 49
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=79.71 E-value=42 Score=31.70 Aligned_cols=171 Identities=13% Similarity=0.085 Sum_probs=91.0
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccH
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTV 253 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~ 253 (532)
..+||+++ .-.-|-...++.++...+..+|+. +.-+. +......
T Consensus 12 ~~~Igvi~-~~~~~~~~~~~~gi~~~a~~~g~~-~~~~~----------------------------------~~~~~~~ 55 (289)
T 3k9c_A 12 SRLLGVVF-ELQQPFHGDLVEQIYAAATRRGYD-VMLSA----------------------------------VAPSRAE 55 (289)
T ss_dssp -CEEEEEE-ETTCHHHHHHHHHHHHHHHHTTCE-EEEEE----------------------------------EBTTBCH
T ss_pred CCEEEEEE-ecCCchHHHHHHHHHHHHHHCCCE-EEEEe----------------------------------CCCCHHH
Confidence 45789998 767788888999999888888873 32110 0111113
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCC-ccCChhh--HHHHHHHHHHHH
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMD-KTFGFDT--AVEEAQRAINSA 330 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD-~SfGFdT--Av~~a~~aI~~a 330 (532)
.+.++.|...++|++++++.+.+.. .+ +.+.+ +++||.+ |++++... .++++|- +...+++.+-.
T Consensus 56 ~~~~~~l~~~~vdgiIi~~~~~~~~---~~-~~~~~---~iPvV~i----~~~~~~~~~~~V~~D~~~~~~~a~~~L~~- 123 (289)
T 3k9c_A 56 KVAVQALMRERCEAAILLGTRFDTD---EL-GALAD---RVPALVV----ARASGLPGVGAVRGDDVAGITLAVDHLTE- 123 (289)
T ss_dssp HHHHHHHTTTTEEEEEEETCCCCHH---HH-HHHHT---TSCEEEE----SSCCSSTTSEEEEECHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhCCCCEEEEECCCCCHH---HH-HHHHc---CCCEEEE----cCCCCCCCCCEEEeChHHHHHHHHHHHHH-
Confidence 4567778888999999999876542 22 33332 5777754 55443211 2444443 33333333222
Q ss_pred HHhhhhccccEEEEEecC------CCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhcc--CceEEEee
Q 009559 331 YIEAHSAYHGIGIVKLMG------RSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETK--GSAVVCVA 402 (532)
Q Consensus 331 ~~eA~S~~~~V~vVevMG------R~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~k--g~~VVVVA 402 (532)
.. +++|+++--.. |..||..+.....- ..+..++ +..++. +.-.+.+++.++.. --+|++.+
T Consensus 124 ----~G-~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~-~~~~~~~-~~~~~~---~~~~~~~~~~l~~~~~~~ai~~~~ 193 (289)
T 3k9c_A 124 ----LG-HRNIAHIDGADAPGGADRRAGFLAAMDRHGL-SASATVV-TGGTTE---TEGAEGMHTLLEMPTPPTAVVAFN 193 (289)
T ss_dssp ----TT-CCSEEEECCTTSTTHHHHHHHHHHHHHHTTC-GGGEEEE-CCCSSH---HHHHHHHHHHHTSSSCCSEEEESS
T ss_pred ----CC-CCcEEEEeCCCCccHHHHHHHHHHHHHHCCC-CCCccEE-ECCCCH---HHHHHHHHHHHcCCCCCCEEEECC
Confidence 23 56787774322 34466554332211 1222222 233432 34556666666643 23554443
No 50
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=79.48 E-value=0.88 Score=44.51 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=24.6
Q ss_pred hCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeee
Q 009559 263 RGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVP 300 (532)
Q Consensus 263 ~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIP 300 (532)
.+.|.++++|||||+-.|.... .+ +++++||+
T Consensus 40 ~~~D~vv~~GGDGTll~~a~~~-----~~-~~PilGIn 71 (258)
T 1yt5_A 40 VTADLIVVVGGDGTVLKAAKKA-----AD-GTPMVGFK 71 (258)
T ss_dssp BCCSEEEEEECHHHHHHHHTTB-----CT-TCEEEEEE
T ss_pred CCCCEEEEEeCcHHHHHHHHHh-----CC-CCCEEEEE
Confidence 3789999999999997655332 12 68999997
No 51
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=79.39 E-value=28 Score=32.50 Aligned_cols=122 Identities=10% Similarity=0.036 Sum_probs=70.1
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccH
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTV 253 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~ 253 (532)
..+||+++..-.-|-...++.++-..+..+|+. +.-. ..+ -+ ....
T Consensus 7 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~-~~~~--------~~~-----~~--------------------~~~~ 52 (289)
T 1dbq_A 7 TKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYT-LILG--------NAW-----NN--------------------LEKQ 52 (289)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCE-EEEE--------ECT-----TC--------------------HHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCe-EEEE--------cCC-----CC--------------------hHHH
Confidence 357999998777788888999998888888873 3210 000 00 0122
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCC--ccCChh--hHHHHHHHHHHH
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMD--KTFGFD--TAVEEAQRAINS 329 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD--~SfGFd--TAv~~a~~aI~~ 329 (532)
.++++.|...++|++++.+.+.+-.. .+.+.+ ..+++||.+ |++.+..+ .++++| .+...+++.+..
T Consensus 53 ~~~~~~l~~~~vdgii~~~~~~~~~~----~~~l~~-~~~iPvV~~----~~~~~~~~~~~~V~~d~~~~~~~~~~~L~~ 123 (289)
T 1dbq_A 53 RAYLSMMAQKRVDGLLVMCSEYPEPL----LAMLEE-YRHIPMVVM----DWGEAKADFTDAVIDNAFEGGYMAGRYLIE 123 (289)
T ss_dssp HHHHHHHHHTTCSEEEEECSCCCHHH----HHHHHH-TTTSCEEEE----ECSSCCSSSCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEEeccCCHHH----HHHHHh-ccCCCEEEE----ccCCCccCcCCEEEeCcHHHHHHHHHHHHH
Confidence 45677888899999999998754222 222322 135777765 44333222 255555 333444433322
Q ss_pred HHHhhhhccccEEEE
Q 009559 330 AYIEAHSAYHGIGIV 344 (532)
Q Consensus 330 a~~eA~S~~~~V~vV 344 (532)
.. +++|+++
T Consensus 124 -----~G-~~~i~~i 132 (289)
T 1dbq_A 124 -----RG-HREIGVI 132 (289)
T ss_dssp -----TT-CCSEEEE
T ss_pred -----CC-CCeEEEE
Confidence 13 5678776
No 52
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=78.88 E-value=1 Score=46.88 Aligned_cols=127 Identities=15% Similarity=0.206 Sum_probs=72.0
Q ss_pred cccCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCcee-ecCCHH-HHhhhhhcCCccee
Q 009559 168 IYFKPEEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTE-MPLSRK-VVQNIHLSGGSLLG 245 (532)
Q Consensus 168 i~f~p~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~-i~Lt~~-~V~~i~~~GGSiLG 245 (532)
+-+...-.+|+||+== ..|.+-..++.++..|...|+ +||- +.+... +.+..+ ....+... +-
T Consensus 32 l~w~~~~k~I~iv~K~-~~~~~~~~~~~l~~~L~~~~~-~V~v---------e~~~~~~~~~~~~~~~~~~~~~----~~ 96 (365)
T 3pfn_A 32 LTWNKSPKSVLVIKKM-RDASLLQPFKELCTHLMEENM-IVYV---------EKKVLEDPAIASDESFGAVKKK----FC 96 (365)
T ss_dssp EEESSCCCEEEEEECT-TCGGGHHHHHHHHHHHHHTSC-EEEE---------EHHHHHSHHHHHCSTTHHHHHH----CE
T ss_pred cccCCCCCEEEEEecC-CCHHHHHHHHHHHHHHHHCCC-EEEE---------ehHHhhhhcccccccccccccc----cc
Confidence 3344445689999853 357888999999999988887 4652 111100 000000 00000000 00
Q ss_pred cccCCccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHH--HHH
Q 009559 246 VSRGAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAV--EEA 323 (532)
Q Consensus 246 TSR~~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv--~~a 323 (532)
+.+ .+.+++ ...+|.++++|||||+-.|..+.. +..++|+||=- -++||-|-+ +..
T Consensus 97 ~~~--~~~~~~-----~~~~DlvI~lGGDGT~L~aa~~~~-----~~~~PvlGiN~----------G~LGFLt~~~~~~~ 154 (365)
T 3pfn_A 97 TFR--EDYDDI-----SNQIDFIICLGGDGTLLYASSLFQ-----GSVPPVMAFHL----------GSLGFLTPFSFENF 154 (365)
T ss_dssp EEC--TTTCCC-----TTTCSEEEEESSTTHHHHHHHHCS-----SSCCCEEEEES----------SSCTTTCCEESTTH
T ss_pred ccc--cChhhc-----ccCCCEEEEEcChHHHHHHHHHhc-----cCCCCEEEEcC----------CCCccceeecHHHH
Confidence 001 011111 147899999999999977766542 35689999942 378997754 345
Q ss_pred HHHHHHHH
Q 009559 324 QRAINSAY 331 (532)
Q Consensus 324 ~~aI~~a~ 331 (532)
.++++++.
T Consensus 155 ~~~l~~vl 162 (365)
T 3pfn_A 155 QSQVTQVI 162 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
No 53
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=77.93 E-value=0.75 Score=48.26 Aligned_cols=53 Identities=23% Similarity=0.437 Sum_probs=36.3
Q ss_pred hCCcEEEEeCChhhHHHHHHHHHHHHhcCCCc-eEeeeecccccCCCCCCccCChhhHHH--HHHHHHHHH
Q 009559 263 RGINMLFVLGGNGTHAGANAIHNECRKRRMKV-AVVGVPKTIDNDILLMDKTFGFDTAVE--EAQRAINSA 330 (532)
Q Consensus 263 ~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I-~VIGIPKTIDNDI~~tD~SfGFdTAv~--~a~~aI~~a 330 (532)
.+.|.++++|||||+-.|..... +..+ +|+||+- -+.||-|.++ ...++++.+
T Consensus 113 ~~~DlVIvlGGDGTlL~aa~~~~-----~~~vpPiLGIN~----------G~lGFLt~~~~~~~~~al~~i 168 (388)
T 3afo_A 113 NRTDLLVTLGGDGTILHGVSMFG-----NTQVPPVLAFAL----------GTLGFLSPFDFKEHKKVFQEV 168 (388)
T ss_dssp HHCSEEEEEESHHHHHHHHHTTT-----TSCCCCEEEEEC----------SSCCSSCCEEGGGHHHHHHHH
T ss_pred cCCCEEEEEeCcHHHHHHHHHhc-----ccCCCeEEEEEC----------CCcccCCcCChHHHHHHHHHH
Confidence 46899999999999987765432 2356 7999962 2678877643 344455554
No 54
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=77.87 E-value=1.8 Score=43.00 Aligned_cols=53 Identities=17% Similarity=0.338 Sum_probs=37.2
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCC
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDIL 308 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~ 308 (532)
+..++++.+.+ +.|.++++|||||+..+. +.+..+..++++..||.==-||+.
T Consensus 52 ~a~~~~~~~~~-~~d~vv~~GGDGTl~~v~---~~l~~~~~~~~l~iiP~Gt~N~~a 104 (304)
T 3s40_A 52 DATKYCQEFAS-KVDLIIVFGGDGTVFECT---NGLAPLEIRPTLAIIPGGTCNDFS 104 (304)
T ss_dssp HHHHHHHHHTT-TCSEEEEEECHHHHHHHH---HHHTTCSSCCEEEEEECSSCCHHH
T ss_pred hHHHHHHHhhc-CCCEEEEEccchHHHHHH---HHHhhCCCCCcEEEecCCcHHHHH
Confidence 34455555543 889999999999997543 223233356899999987788885
No 55
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=76.94 E-value=16 Score=35.69 Aligned_cols=73 Identities=12% Similarity=0.206 Sum_probs=49.8
Q ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC-c
Q 009559 173 EEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA-P 251 (532)
Q Consensus 173 ~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~-~ 251 (532)
+..||||+++- .=|.|+++-.++...|...|+. ++. .+++. +. ...+. .
T Consensus 7 ~~~~igi~q~~-~hp~ld~~~~G~~~~L~~~G~~-------------~g~--nv~~~------~~--------~a~gd~~ 56 (302)
T 3lkv_A 7 KTAKVAVSQIV-EHPALDATRQGLLDGLKAKGYE-------------EGK--NLEFD------YK--------TAQGNPA 56 (302)
T ss_dssp CCEEEEEEESC-CCHHHHHHHHHHHHHHHHTTCC-------------BTT--TEEEE------EE--------ECTTCHH
T ss_pred CCceEEEEEee-cChhHHHHHHHHHHHHHhhCcc-------------cCC--cEEEE------EE--------eCCCCHH
Confidence 56899999985 6799999999999999888853 111 01111 00 11111 2
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChh
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNG 275 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdG 275 (532)
....+++.|...++|.++.||..-
T Consensus 57 ~~~~~~~~l~~~~~DlIiai~t~a 80 (302)
T 3lkv_A 57 IAVQIARQFVGENPDVLVGIATPT 80 (302)
T ss_dssp HHHHHHHHHHTTCCSEEEEESHHH
T ss_pred HHHHHHHHHHhcCCcEEEEcCCHH
Confidence 356788999999999999887543
No 56
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=76.57 E-value=57 Score=31.52 Aligned_cols=122 Identities=8% Similarity=0.105 Sum_probs=69.1
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC-cc
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA-PT 252 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~-~~ 252 (532)
..+||++...-.-|-...++.++...+..+|+. ++-. .+... ..
T Consensus 63 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~-~~~~----------------------------------~~~~~~~~ 107 (332)
T 2o20_A 63 TTTVGVILPTITSTYFAAITRGVDDIASMYKYN-MILA----------------------------------NSDNDVEK 107 (332)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCE-EEEE----------------------------------ECTTCHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCE-EEEE----------------------------------ECCCChHH
Confidence 457999987766778888899998888888873 3210 00001 11
Q ss_pred HHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChh--hHHHHHHHHHHHH
Q 009559 253 VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFD--TAVEEAQRAINSA 330 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFd--TAv~~a~~aI~~a 330 (532)
..+.++.|...++|++++.+.+.+-.. + +++.+. +++||.+=..++++ .. .++++| .+...+.+.+-.
T Consensus 108 ~~~~~~~l~~~~vdgiI~~~~~~~~~~---~-~~l~~~--~iPvV~~~~~~~~~--~~-~~V~~D~~~~~~~a~~~L~~- 177 (332)
T 2o20_A 108 EEKVLETFLSKQVDGIVYMGSSLDEKI---R-TSLKNS--RTPVVLVGTIDGDK--EI-PSVNIDYHLAAYQSTKKLID- 177 (332)
T ss_dssp HHHHHHHHHHTTCSEEEECSSCCCHHH---H-HHHHHH--CCCEEEESCCCTTS--CS-CEEECCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCHHH---H-HHHHhC--CCCEEEEccccCCC--CC-CEEEeChHHHHHHHHHHHHH-
Confidence 235677888899999999987544322 2 233333 46677653333221 11 244544 333333333322
Q ss_pred HHhhhhccccEEEEE
Q 009559 331 YIEAHSAYHGIGIVK 345 (532)
Q Consensus 331 ~~eA~S~~~~V~vVe 345 (532)
.. +++|+++-
T Consensus 178 ----~G-~~~I~~i~ 187 (332)
T 2o20_A 178 ----SG-NKKIAYIM 187 (332)
T ss_dssp ----TT-CSSEEEEC
T ss_pred ----CC-CCeEEEEe
Confidence 23 56787774
No 57
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=75.44 E-value=61 Score=31.38 Aligned_cols=123 Identities=10% Similarity=0.041 Sum_probs=70.6
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccH
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTV 253 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~ 253 (532)
..+||+++..-.-|-...++.++-..+..+|+. ++- ...+ -+ ....
T Consensus 58 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~--------~~~~-----~~--------------------~~~~ 103 (340)
T 1qpz_A 58 TKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYT-LIL--------GNAW-----NN--------------------LEKQ 103 (340)
T ss_dssp CSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCE-EEE--------EECT-----TC--------------------HHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCE-EEE--------EeCC-----CC--------------------HHHH
Confidence 357999987767788888999998888888873 321 0000 00 0122
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCC--ccCChh--hHHHHHHHHHHH
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMD--KTFGFD--TAVEEAQRAINS 329 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD--~SfGFd--TAv~~a~~aI~~ 329 (532)
.+.++.|...++|++++.+.+.+-.. .+.+++ ..+++||.+ |++.+..+ .++++| .+...+++.+-.
T Consensus 104 ~~~~~~l~~~~vdgiI~~~~~~~~~~----~~~l~~-~~~iPvV~~----~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~ 174 (340)
T 1qpz_A 104 RAYLSMMAQKRVDGLLVMCSEYPEPL----LAMLEE-YRHIPMVVM----DWGEAKADFTDAVIDNAFEGGYMAGRYLIE 174 (340)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCCHHH----HHHHHT-TTTSCEEEE----EESSCCCSSSEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEEeCCCCChHH----HHHHHh-hCCCCEEEE----ecccCCCCCCCEEEECHHHHHHHHHHHHHH
Confidence 35677888899999999987754221 222322 135677765 44443222 256655 333444433332
Q ss_pred HHHhhhhccccEEEEE
Q 009559 330 AYIEAHSAYHGIGIVK 345 (532)
Q Consensus 330 a~~eA~S~~~~V~vVe 345 (532)
.. +++|+++-
T Consensus 175 -----~G-~~~I~~i~ 184 (340)
T 1qpz_A 175 -----RG-HREIGVIP 184 (340)
T ss_dssp -----HT-CCCEEEEC
T ss_pred -----CC-CCEEEEEe
Confidence 13 56788773
No 58
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=74.79 E-value=46 Score=31.29 Aligned_cols=122 Identities=12% Similarity=0.051 Sum_probs=68.4
Q ss_pred CcEEEEEeCCCCc--chHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc
Q 009559 174 EVKAAIVTCGGLC--PGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP 251 (532)
Q Consensus 174 ~~kiaIvt~GG~c--PGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~ 251 (532)
..+||+++..-.- |=...++.++-..+.++|+. +.-+. +.....
T Consensus 8 s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~~---------------------------------~~~~~~ 53 (288)
T 3gv0_A 8 TNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYH-LVVTP---------------------------------HIHAKD 53 (288)
T ss_dssp CCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCE-EEECC---------------------------------BSSGGG
T ss_pred CCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCE-EEEec---------------------------------CCcchh
Confidence 4578998876443 77888888888888778773 32110 000011
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCC-ccCChhh--HHHHHHHHHH
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMD-KTFGFDT--AVEEAQRAIN 328 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD-~SfGFdT--Av~~a~~aI~ 328 (532)
...++.+.+...++|++++.+.+.+-... +.+.+. +++||. +|++.+..+ .++++|- +...+++.+.
T Consensus 54 ~~~~~~~~l~~~~vdgiIi~~~~~~~~~~----~~l~~~--~iPvV~----i~~~~~~~~~~~V~~D~~~~g~~a~~~L~ 123 (288)
T 3gv0_A 54 SMVPIRYILETGSADGVIISKIEPNDPRV----RFMTER--NMPFVT----HGRSDMGIEHAFHDFDNEAYAYEAVERLA 123 (288)
T ss_dssp TTHHHHHHHHHTCCSEEEEESCCTTCHHH----HHHHHT--TCCEEE----ESCCCSSCCCEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccEEEEecCCCCcHHH----HHHhhC--CCCEEE----ECCcCCCCCCcEEEeCcHHHHHHHHHHHH
Confidence 22456677888999999999876543222 333333 467774 455543322 3455543 3333333332
Q ss_pred HHHHhhhhccccEEEEE
Q 009559 329 SAYIEAHSAYHGIGIVK 345 (532)
Q Consensus 329 ~a~~eA~S~~~~V~vVe 345 (532)
. .. +++|+++-
T Consensus 124 ~-----~G-~~~I~~i~ 134 (288)
T 3gv0_A 124 Q-----CG-RKRIAVIV 134 (288)
T ss_dssp H-----TT-CCEEEEEC
T ss_pred H-----CC-CCeEEEEc
Confidence 2 12 45677763
No 59
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=74.20 E-value=23 Score=36.50 Aligned_cols=181 Identities=15% Similarity=0.198 Sum_probs=101.5
Q ss_pred CCCCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC
Q 009559 171 KPEEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA 250 (532)
Q Consensus 171 ~p~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~ 250 (532)
.|+.+=+|+.+.||.-| ...+..+..+.+.|.+=|.|.+. ++.. .++..+.-...|-+++++.. +
T Consensus 89 ~~d~lvig~a~~gg~l~---~~~~~~I~~Al~~G~nVvsglh~----~l~~-------~pel~~~A~~~Gv~i~dvr~-~ 153 (350)
T 2g0t_A 89 GAEVLIIGVSNPGGYLE---EQIATLVKKALSLGMDVISGLHF----KISQ-------QTEFLKIAHENGTRIIDIRI-P 153 (350)
T ss_dssp TCCEEEECCCSCCHHHH---HHHHHHHHHHHHTTCEEEECCCC------CC-------HHHHHHHHHHHTCCEEESSS-C
T ss_pred CCCEEEEEecCCCCCCC---HHHHHHHHHHHHcCCcEEeCChh----hhhC-------CHHHHHHHHHCCCEEEEeCc-C
Confidence 35555556656677644 46666777778889842333322 2222 23333333444668888744 4
Q ss_pred cc-HHHHHHHHHHhCCcEEEEeCChh---hHHHHHHHHHHHHhcCCCceEeeeecccc---cCCCCCCccCChhhHHHHH
Q 009559 251 PT-VSEIVDSMEERGINMLFVLGGNG---THAGANAIHNECRKRRMKVAVVGVPKTID---NDILLMDKTFGFDTAVEEA 323 (532)
Q Consensus 251 ~~-~~~ivd~L~~~gId~L~vIGGdG---T~~gA~~L~ee~~kr~~~I~VIGIPKTID---NDI~~tD~SfGFdTAv~~a 323 (532)
++ +.-.....++.....+|+.|=|- -+..+..|.+.++++|+++..++-.-|.- .|....--++-++-+....
T Consensus 154 p~~l~v~~g~i~~i~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg~li~~~~gv~~D~~~~~~~ag~~ 233 (350)
T 2g0t_A 154 PLELDVLRGGIYRKKIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGADAGYVIDAVPADFVSGVV 233 (350)
T ss_dssp CSSCCCCCSGGGGCCSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHHHHTTCSEECCGGGSBGGGHHHHH
T ss_pred CCcccccccceeeecceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCceeeeeccCCCCCCCceecchhhHHH
Confidence 42 21111223334667899988764 45677888899999999988877665543 3322211244455444444
Q ss_pred HHHHHHHHHhhhhccccEEEEEecCC--CccHHHHHHhHhcC-CccEEEc
Q 009559 324 QRAINSAYIEAHSAYHGIGIVKLMGR--SSGYIAMHASLASG-QIDICLI 370 (532)
Q Consensus 324 ~~aI~~a~~eA~S~~~~V~vVevMGR--~sG~LA~~aaLAsg-~ad~~LI 370 (532)
...+..+. ....-+.+||-.|. +..+.....+|..| .+|.+++
T Consensus 234 e~~i~~~~----~~~~D~ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl 279 (350)
T 2g0t_A 234 EKAVLKLE----KTGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFL 279 (350)
T ss_dssp HHHHHHHH----HTTCSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEE
T ss_pred HhhHHHhh----hcCCCEEEEccCeeccccCchHHHHHHHcCCCCCEEEE
Confidence 44444332 22345889998884 44555545554443 5888887
No 60
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=72.61 E-value=6.7 Score=40.72 Aligned_cols=50 Identities=20% Similarity=0.311 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccC
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDND 306 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDND 306 (532)
.++++++.+++.+.|.++-|||--++..|..++-. .++++|.||-|--.|
T Consensus 94 ~v~~~~~~~~~~~~d~IIavGGGs~~D~AK~iA~~-----~~~p~i~IPTTagtg 143 (387)
T 3uhj_A 94 EIERVRKVAIEHGSDILVGVGGGKTADTAKIVAID-----TGARIVIAPTIASTD 143 (387)
T ss_dssp HHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHH-----TTCEEEECCSSCCCS
T ss_pred HHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHh-----cCCCEEEecCcccCC
Confidence 45688899999999999999999999999888732 368999999994433
No 61
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=72.59 E-value=37 Score=32.77 Aligned_cols=86 Identities=15% Similarity=0.180 Sum_probs=52.4
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccH
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTV 253 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~ 253 (532)
..+||++...-.-|-...++.++-..+..+|+. +.-. ..+. +. ...
T Consensus 60 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~--------~~~~-----~~--------------------~~~ 105 (332)
T 2hsg_A 60 TTTVGVIIPDISNIFYAELARGIEDIATMYKYN-IILS--------NSDQ-----NQ--------------------DKE 105 (332)
T ss_dssp CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCE-EEEE--------ECCS-----HH--------------------HHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCE-EEEE--------eCCC-----Ch--------------------HHH
Confidence 457999987766788889999999988888873 3211 0000 00 012
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
.+.++.|...++|++++.+.+.+-. .+ +++.+ .+++||.+
T Consensus 106 ~~~~~~l~~~~vdgiI~~~~~~~~~---~~-~~l~~--~~iPvV~~ 145 (332)
T 2hsg_A 106 LHLLNNMLGKQVDGIIFMSGNVTEE---HV-EELKK--SPVPVVLA 145 (332)
T ss_dssp HHHHHHTSCCSSCCEEECCSSCCHH---HH-HHHTT--SSSCEEEE
T ss_pred HHHHHHHHhCCCcEEEEecCCCCHH---HH-HHHHh--CCCCEEEE
Confidence 3456666778999999998765431 22 33333 35677765
No 62
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=72.25 E-value=5.8 Score=40.46 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=39.4
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeeccc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTI 303 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTI 303 (532)
.++++++.+++.+.|.++-|||--.+..|..++- . + ++++|.||-|-
T Consensus 74 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~-~--~--~~p~i~IPTTa 120 (370)
T 1jq5_A 74 EVERIANIARKAEAAIVIGVGGGKTLDTAKAVAD-E--L--DAYIVIVPTAA 120 (370)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHH-H--H--TCEEEEEESSC
T ss_pred HHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHH-h--c--CCCEEEecccc
Confidence 3567888899999999999999999999888873 2 2 58999999993
No 63
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=70.93 E-value=15 Score=34.92 Aligned_cols=176 Identities=13% Similarity=0.084 Sum_probs=91.7
Q ss_pred CcEEEEEeCCCCcchHH-HHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCcc
Q 009559 174 EVKAAIVTCGGLCPGLN-DVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPT 252 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlN-avIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~ 252 (532)
..+||+++..-.-|-.. .++.++...+..+|+. ++-+. .+ .....
T Consensus 13 s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~~--------~~-------------------------~~~~~ 58 (301)
T 3miz_A 13 SNTFGIITDYVSTTPYSVDIVRGIQDWANANGKT-ILIAN--------TG-------------------------GSSER 58 (301)
T ss_dssp CCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCE-EEEEE--------CT-------------------------TCHHH
T ss_pred CCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCE-EEEEe--------CC-------------------------CChHH
Confidence 35789998776667777 8999998888888873 42110 00 00012
Q ss_pred HHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCC--CccCChhh--HHHHHHHHHH
Q 009559 253 VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLM--DKTFGFDT--AVEEAQRAIN 328 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~t--D~SfGFdT--Av~~a~~aI~ 328 (532)
..++++.|...++|++++++.+... ..+.+.+ .+++||.+ |++.+.. -.++++|- +...+++.+.
T Consensus 59 ~~~~~~~l~~~~vdGiIi~~~~~~~-----~~~~~~~--~~iPvV~~----~~~~~~~~~~~~V~~D~~~~g~~a~~~L~ 127 (301)
T 3miz_A 59 EVEIWKMFQSHRIDGVLYVTMYRRI-----VDPESGD--VSIPTVMI----NCRPQTRELLPSIEPDDYQGARDLTRYLL 127 (301)
T ss_dssp HHHHHHHHHHTTCSEEEEEEEEEEE-----CCCCCTT--CCCCEEEE----EEECSSTTSSCEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEecCCccH-----HHHHHHh--CCCCEEEE----CCCCCCCCCCCEEeeChHHHHHHHHHHHH
Confidence 3467888899999999999877543 1122222 35777755 3433322 13444443 3333333322
Q ss_pred HHHHhhhhccccEEEEEec-------CCCccHHHHHHhHhcCCccEEEcCCC---CCCCCChhHHHHHHHHHHhcc--Cc
Q 009559 329 SAYIEAHSAYHGIGIVKLM-------GRSSGYIAMHASLASGQIDICLIPES---PFNLHGPNGVLRHLKYLIETK--GS 396 (532)
Q Consensus 329 ~a~~eA~S~~~~V~vVevM-------GR~sG~LA~~aaLAsg~ad~~LIPE~---pf~leg~~~ll~~lk~~~~~k--g~ 396 (532)
. .. +++|+++--. -|..||..+.....- ..+..++-+. .++.+.-. +.+.+++.++.. --
T Consensus 128 ~-----~G-~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 199 (301)
T 3miz_A 128 E-----RG-HRRIGYIRLNPILLGAELRLDAFRRTTSEFGL-TENDLSISLGMDGPVGAENNY-VFAAATEMLKQDDRPT 199 (301)
T ss_dssp T-----TT-CCSEEEEECCTTSHHHHHHHHHHHHHHHHHTC-CGGGEEEEECEESSTTSCEEC-HHHHHHHHHTSTTCCS
T ss_pred H-----cC-CCeEEEEecCccchhHHHHHHHHHHHHHHcCC-CCCcceEEEcCCCCcCccccH-HHHHHHHHHcCCCCCc
Confidence 1 23 5678877532 244566654333221 1222233333 55554211 124555566533 23
Q ss_pred eEEEee
Q 009559 397 AVVCVA 402 (532)
Q Consensus 397 ~VVVVA 402 (532)
+|++.+
T Consensus 200 ai~~~~ 205 (301)
T 3miz_A 200 AIMSGN 205 (301)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 555443
No 64
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=69.68 E-value=15 Score=35.30 Aligned_cols=104 Identities=11% Similarity=0.042 Sum_probs=63.7
Q ss_pred cchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceeccc---CCccHHHHHHHHHH
Q 009559 186 CPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSR---GAPTVSEIVDSMEE 262 (532)
Q Consensus 186 cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR---~~~~~~~ivd~L~~ 262 (532)
+|.-....+.+++.+...|+++|.-+.. +..+ .........+.+...|+.+..... +..+....++.|++
T Consensus 116 ~~~~~~~~~~~~~~l~~~g~~~ia~i~~------~~~~-~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~ 188 (362)
T 3snr_A 116 PQPIPIMGKVLYEHMKKNNVKTVGYIGY------SDSY-GDLWFNDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVA 188 (362)
T ss_dssp SCCHHHHHHHHHHHHHHTTCCEEEEEEE------SSHH-HHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhcCCCEEEEEec------CchH-HHHHHHHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHHHh
Confidence 3445667778888888889987754421 1111 001112223345556777654432 33467778888889
Q ss_pred hCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 263 RGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 263 ~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
.+.+++|+.+-+.. |..+.+.+++.|++++++++
T Consensus 189 ~~~dav~~~~~~~~---a~~~~~~~~~~g~~~p~i~~ 222 (362)
T 3snr_A 189 ANPDAILVGASGTA---AALPQTTLRERGYNGLIYQT 222 (362)
T ss_dssp HCCSEEEEECCHHH---HHHHHHHHHHTTCCSEEEEC
T ss_pred cCCCEEEEecCcch---HHHHHHHHHHcCCCccEEec
Confidence 99999998874442 34445677788888777654
No 65
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=69.51 E-value=17 Score=35.90 Aligned_cols=105 Identities=9% Similarity=0.143 Sum_probs=66.4
Q ss_pred cchHHHHHHHHHHHHHH-cCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceeccc---CCccHHHHHHHHH
Q 009559 186 CPGLNDVIRHIVITLEI-YGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSR---GAPTVSEIVDSME 261 (532)
Q Consensus 186 cPGlNavIr~iv~~l~~-ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR---~~~~~~~ivd~L~ 261 (532)
+|--+...+.+++.+.. .|+++|.-+..- ..+ -........+.+...|+++..... +..+....++.|+
T Consensus 123 ~~~~~~~~~~~~~~l~~~~g~~~iaii~~~------~~~-g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~ 195 (392)
T 3lkb_A 123 TTSYSEQVVALLEYIAREKKGAKVALVVHP------SPF-GRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFE 195 (392)
T ss_dssp ECCHHHHHHHHHHHHHHHCTTCEEEEEECS------SHH-HHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhCCCCEEEEEEeC------Cch-hhhHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHH
Confidence 34556677778888765 588877544321 111 011122233445566887765533 3346778889999
Q ss_pred HhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeee
Q 009559 262 ERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVP 300 (532)
Q Consensus 262 ~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIP 300 (532)
+.+.+++|+.+.+.. +..+.+.+++.|+++++++..
T Consensus 196 ~~~~dav~~~~~~~~---a~~~~~~~~~~g~~~~~~~~~ 231 (392)
T 3lkb_A 196 QAGVEYVVHQNVAGP---VANILKDAKRLGLKMRHLGAH 231 (392)
T ss_dssp HTTCCEEEEESCHHH---HHHHHHHHHHTTCCCEEEECG
T ss_pred hcCCCEEEEecCcch---HHHHHHHHHHcCCCceEEEec
Confidence 999999998775543 344557778889988888653
No 66
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=69.37 E-value=13 Score=36.08 Aligned_cols=103 Identities=15% Similarity=0.194 Sum_probs=63.5
Q ss_pred chHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceeccc---CCccHHHHHHHHHHh
Q 009559 187 PGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSR---GAPTVSEIVDSMEER 263 (532)
Q Consensus 187 PGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR---~~~~~~~ivd~L~~~ 263 (532)
|--....+.+++.+...|+++|.-+.. +... .........+.+...|+++..... +..+...+++.|++.
T Consensus 121 ~~~~~~~~~~~~~l~~~g~~~ia~i~~------~~~~-g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~ 193 (368)
T 4eyg_A 121 FTLAQSSIIIGDWAAKNGIKKVATLTS------DYAP-GNDALAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMKDA 193 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCEEEEEEE------SSHH-HHHHHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHcCCCEEEEEec------CchH-hHHHHHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHHhc
Confidence 444556677888887789887754431 1111 001112233445566777765543 335678889999999
Q ss_pred CCcEEEEeCChhhHHHHHHHHHHHHhcCCC---ceEeee
Q 009559 264 GINMLFVLGGNGTHAGANAIHNECRKRRMK---VAVVGV 299 (532)
Q Consensus 264 gId~L~vIGGdGT~~gA~~L~ee~~kr~~~---I~VIGI 299 (532)
+.+++|+.+.+. .+..+.+.+++.|+. +++++.
T Consensus 194 ~~d~v~~~~~~~---~a~~~~~~~~~~g~~~~~v~~~~~ 229 (368)
T 4eyg_A 194 KPDAMFVFVPAG---QGGNFMKQFAERGLDKSGIKVIGP 229 (368)
T ss_dssp CCSEEEEECCTT---CHHHHHHHHHHTTGGGTTCEEEEE
T ss_pred CCCEEEEeccch---HHHHHHHHHHHcCCCcCCceEEec
Confidence 999999977666 233444566777776 667764
No 67
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=68.99 E-value=20 Score=34.97 Aligned_cols=103 Identities=9% Similarity=0.086 Sum_probs=64.7
Q ss_pred chHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceeccc---CCccHHHHHHHHHHh
Q 009559 187 PGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSR---GAPTVSEIVDSMEER 263 (532)
Q Consensus 187 PGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR---~~~~~~~ivd~L~~~ 263 (532)
|--....+.+++.+.+.|+++|.-+... ... -...-....+.+...|+++..... +..+....++.+++.
T Consensus 133 ~~~~~~~~~~~~~l~~~g~~~ia~i~~~------~~~-~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~ 205 (375)
T 4evq_A 133 FANGQIGRATGDAMIKAGLKKAVTVTWK------YAA-GEEMVSGFKKSFTAGKGEVVKDITIAFPDVEFQSALAEIASL 205 (375)
T ss_dssp CCHHHHHHHHHHHHHHTTCCEEEEEEES------SHH-HHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred CChHhHHHHHHHHHHHcCCcEEEEEecC------chH-HHHHHHHHHHHHHHcCCeEEEEEecCCCCccHHHHHHHHHhc
Confidence 4445566778888877898877554211 111 001112233445566777655432 334677888999999
Q ss_pred CCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 264 GINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 264 gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
+.+++|+.+-+. .|..+.+.+++.|+++++++.
T Consensus 206 ~~dai~~~~~~~---~a~~~~~~~~~~g~~vp~~~~ 238 (375)
T 4evq_A 206 KPDCVYAFFSGG---GALKFIKDYAAANLGIPLWGP 238 (375)
T ss_dssp CCSEEEEECCTH---HHHHHHHHHHHTTCCCCEEEE
T ss_pred CCCEEEEecCcc---hHHHHHHHHHHcCCCceEEec
Confidence 999999977664 334455677788999888875
No 68
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=67.25 E-value=80 Score=29.31 Aligned_cols=126 Identities=11% Similarity=-0.002 Sum_probs=73.8
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHH
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVS 254 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~ 254 (532)
.+||+++..-.-|-...++.++-..+..+|+. +.-+. +........
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~~---------------------------------~~~~~~~~~ 61 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYS-MLLTS---------------------------------TNNNPDNER 61 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCE-EEEEE---------------------------------CTTCHHHHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCE-EEEEe---------------------------------CCCChHHHH
Confidence 58999999888889999999999999888883 42110 000011234
Q ss_pred HHHHHHHHhCCcEEEEeCChhhHH-HHHHHHHHHHhcCCCceEeeeecccccCCCCCC-ccCChhh--HHHHHHHHHHHH
Q 009559 255 EIVDSMEERGINMLFVLGGNGTHA-GANAIHNECRKRRMKVAVVGVPKTIDNDILLMD-KTFGFDT--AVEEAQRAINSA 330 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdGT~~-gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD-~SfGFdT--Av~~a~~aI~~a 330 (532)
+.++.|...++|++++.+.+.+.. ....+.+++++. +++||.+ |++++..+ .++++|- +...+++.+..
T Consensus 62 ~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~--~iPvV~~----~~~~~~~~~~~V~~d~~~~~~~a~~~L~~- 134 (298)
T 3tb6_A 62 RGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKN--GIPFAMI----NASYAELAAPSFTLDDVKGGMMAAEHLLS- 134 (298)
T ss_dssp HHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHT--TCCEEEE----SSCCTTCSSCEEEECHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhc--CCCEEEE----ecCcCCCCCCEEEeCcHHHHHHHHHHHHH-
Confidence 677888899999999999875321 111222344444 4677754 44443222 2445443 33333333222
Q ss_pred HHhhhhccccEEEEEe
Q 009559 331 YIEAHSAYHGIGIVKL 346 (532)
Q Consensus 331 ~~eA~S~~~~V~vVev 346 (532)
.. +++|+++--
T Consensus 135 ----~G-~~~i~~i~~ 145 (298)
T 3tb6_A 135 ----LG-HTHMMGIFK 145 (298)
T ss_dssp ----TT-CCSEEEEEE
T ss_pred ----CC-CCcEEEEcC
Confidence 12 567877754
No 69
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=67.22 E-value=88 Score=29.75 Aligned_cols=102 Identities=18% Similarity=0.175 Sum_probs=64.4
Q ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC-c
Q 009559 173 EEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA-P 251 (532)
Q Consensus 173 ~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~-~ 251 (532)
+..+|||++..-.-|=...++.++-..+..+|++ +.-+. +... .
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~~----------------------------------~~~~~~ 46 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYK-TDLQY----------------------------------ADDDIP 46 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCE-EEEEE----------------------------------CTTCHH
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCE-EEEee----------------------------------CCCCHH
Confidence 3468999998888888999999999998888873 32110 0111 1
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCC---CCccCChh
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILL---MDKTFGFD 317 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~---tD~SfGFd 317 (532)
.-.+.++.+...++|++++.+-+.+.. ....+.+.+. +|+||.+ |++++. .+.++|+|
T Consensus 47 ~~~~~i~~~~~~~vdgiIi~~~~~~~~--~~~~~~~~~~--giPvV~~----~~~~~~~~~~~~~V~~D 107 (330)
T 3uug_A 47 NQLSQIENMVTKGVKVLVIASIDGTTL--SDVLKQAGEQ--GIKVIAY----DRLIRNSGDVSYYATFD 107 (330)
T ss_dssp HHHHHHHHHHHHTCSEEEECCSSGGGG--HHHHHHHHHT--TCEEEEE----SSCCCSCTTCCEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCchhH--HHHHHHHHHC--CCCEEEE----CCCCCCCCceeEEEEeC
Confidence 223567778889999999999875321 1122333333 5778765 554433 23456654
No 70
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=67.01 E-value=22 Score=34.67 Aligned_cols=104 Identities=14% Similarity=0.182 Sum_probs=64.6
Q ss_pred cchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceeccc---CCccHHHHHHHHHH
Q 009559 186 CPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSR---GAPTVSEIVDSMEE 262 (532)
Q Consensus 186 cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR---~~~~~~~ivd~L~~ 262 (532)
+|.-....+.+++.+...|+++|.-+..- ..+ -........+.+...|+.+..... +..+....++.|++
T Consensus 122 ~~~~~~~~~~~~~~l~~~g~~~iaii~~~------~~~-g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~ 194 (364)
T 3lop_A 122 KASYQQEIDKMITALVTIGVTRIGVLYQE------DAL-GKEAITGVERTLKAHALAITAMASYPRNTANVGPAVDKLLA 194 (364)
T ss_dssp SCCHHHHHHHHHHHHHHTTCCCEEEEEET------THH-HHHHHHHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHcCCceEEEEEeC------chh-hHHHHHHHHHHHHHcCCcEEEEEEecCCCccHHHHHHHHHh
Confidence 34445566778888888898877544321 111 001112233445566777665432 34567888999999
Q ss_pred hCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 263 RGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 263 ~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
.+.+++|+.+.+. .+..+.+.+++.|+++++++.
T Consensus 195 ~~~d~v~~~~~~~---~a~~~~~~~~~~g~~~~~i~~ 228 (364)
T 3lop_A 195 ADVQAIFLGATAE---PAAQFVRQYRARGGEAQLLGL 228 (364)
T ss_dssp SCCSEEEEESCHH---HHHHHHHHHHHTTCCCEEEEC
T ss_pred CCCCEEEEecCcH---HHHHHHHHHHHcCCCCeEEEe
Confidence 9999999877554 334455677888888777654
No 71
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=65.37 E-value=1e+02 Score=29.84 Aligned_cols=34 Identities=6% Similarity=-0.013 Sum_probs=28.5
Q ss_pred CCcEEEEEeCCCCc-chHHHHHHHHHHHHHHcCCc
Q 009559 173 EEVKAAIVTCGGLC-PGLNDVIRHIVITLEIYGVK 206 (532)
Q Consensus 173 ~~~kiaIvt~GG~c-PGlNavIr~iv~~l~~ygv~ 206 (532)
+..+||+++.+-.- |=...++.++...+..+|++
T Consensus 2 ~~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~ 36 (350)
T 3h75_A 2 SLTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLD 36 (350)
T ss_dssp -CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCE
T ss_pred CCCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCe
Confidence 35689999988777 88999999999999888883
No 72
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=65.21 E-value=20 Score=35.06 Aligned_cols=103 Identities=16% Similarity=0.282 Sum_probs=61.9
Q ss_pred CcccccCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEccccccccc------CCce------eec-CCHH
Q 009559 165 REEIYFKPEEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCD------KELT------EMP-LSRK 231 (532)
Q Consensus 165 r~~i~f~p~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~------~~~~------~i~-Lt~~ 231 (532)
|+...+....++-++|.++|+-|- .++.+. ....+ ++++-.|..=|++ ..+. ++. ++++
T Consensus 11 ~~~~~~~~~~~~~~lIv~ng~~~~---~~~~~~---~~~~~--~i~aDgGa~~l~~~~~~~~~~~~Pd~ivGD~DSi~~~ 82 (247)
T 3s4y_A 11 RENLYFQGGNLKYCLVILNQPLDN---YFRHLW---NKALL--RACADGGANRLYDITEGERESFLPEFINGDFDSIRPE 82 (247)
T ss_dssp ---------CCCEEEEECSSCCCT---THHHHH---HHCSC--EEEETTHHHHHHHHTTTCGGGCCCSEEEECCSSSCHH
T ss_pred cccccccCCCCCEEEEEECCcchH---HHHHHH---hhCCE--EEEEchHHHHHHHhccccccCCCccEEEcCCcCCCHH
Confidence 555556556677788888999883 333332 23434 6899999776665 2211 122 6788
Q ss_pred HHhhhhhcCCcceecccCC--ccHHHHHHHHHHh------CCcEEEEeCChhh
Q 009559 232 VVQNIHLSGGSLLGVSRGA--PTVSEIVDSMEER------GINMLFVLGGNGT 276 (532)
Q Consensus 232 ~V~~i~~~GGSiLGTSR~~--~~~~~ivd~L~~~------gId~L~vIGGdGT 276 (532)
..+.+...|-.++-.. .+ -|.+++++.+.++ +.+-++++|+-|.
T Consensus 83 ~~~~~~~~~~~i~~~p-eKD~TD~ekAl~~~~~~~~~~~~~~~~I~ilGa~GG 134 (247)
T 3s4y_A 83 VREYYATKGCELISTP-DQDHTDFTKCLKMLQKKIEEKDLKVDVIVTLGGLAG 134 (247)
T ss_dssp HHHHHHHTTCEEEECC-CTTSCHHHHHHHHHHHHHHHTTCCCSEEEEECCSSS
T ss_pred HHHHHHhcCCEEEECC-CCCcCHHHHHHHHHHHhhhhccCCCCEEEEEecCCC
Confidence 8888877765565433 22 2678888877664 7899999999875
No 73
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=64.50 E-value=23 Score=34.88 Aligned_cols=77 Identities=13% Similarity=0.103 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCC-CccCChh--hHHHHHHHHHHH
Q 009559 253 VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLM-DKTFGFD--TAVEEAQRAINS 329 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~t-D~SfGFd--TAv~~a~~aI~~ 329 (532)
..++++.|...++|++++++-..+.... +.+.+. +++||.+ |++.... -.+++.| .+...+++.+-.
T Consensus 117 ~~~~~~~l~~~~vdGiIi~~~~~~~~~~----~~l~~~--~iPvV~i----~~~~~~~~~~~V~~D~~~~~~~a~~~L~~ 186 (366)
T 3h5t_A 117 HVSAQQLVNNAAVDGVVIYSVAKGDPHI----DAIRAR--GLPAVIA----DQPAREEGMPFIAPNNRKAIAPAAQALID 186 (366)
T ss_dssp HHHHHHHHHTCCCSCEEEESCCTTCHHH----HHHHHH--TCCEEEE----SSCCSCTTCCEEEECHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEecCCCChHHH----HHHHHC--CCCEEEE----CCccCCCCCCEEEeChHHHHHHHHHHHHH
Confidence 4567888999999999999875443222 233333 4667754 4443211 1234443 233333333322
Q ss_pred HHHhhhhccccEEEEE
Q 009559 330 AYIEAHSAYHGIGIVK 345 (532)
Q Consensus 330 a~~eA~S~~~~V~vVe 345 (532)
.. +++|++|-
T Consensus 187 -----~G-~r~I~~i~ 196 (366)
T 3h5t_A 187 -----AG-HRKIGILS 196 (366)
T ss_dssp -----TT-CCSEEEEE
T ss_pred -----CC-CCcEEEEe
Confidence 23 56788875
No 74
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=64.03 E-value=8.3 Score=39.97 Aligned_cols=53 Identities=17% Similarity=0.237 Sum_probs=42.0
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcC----------------CCceEeeeecccc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRR----------------MKVAVVGVPKTID 304 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~----------------~~I~VIGIPKTID 304 (532)
.++++++.+++.++|.++-|||--+++.|..++-.....+ ..+++|.||-|--
T Consensus 94 ~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTag 162 (408)
T 1oj7_A 94 TLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPA 162 (408)
T ss_dssp HHHHHHHHHHHHTCCEEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCS
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCCc
Confidence 3567889999999999999999999999888875432111 3589999999853
No 75
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=63.16 E-value=12 Score=38.51 Aligned_cols=56 Identities=18% Similarity=0.280 Sum_probs=44.1
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhc-------------CCCceEeeeecccccCC
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKR-------------RMKVAVVGVPKTIDNDI 307 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr-------------~~~I~VIGIPKTIDNDI 307 (532)
.++++++.+++.+.|.++-|||--++..|..++-..... .-.+++|.||-|--.|-
T Consensus 76 ~v~~~~~~~~~~~~D~IIavGGGsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtgS 144 (383)
T 3ox4_A 76 AVLEGLKILKDNNSDFVISLGGGSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINTTAGTAS 144 (383)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEECSSSCCT
T ss_pred HHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeCCCCchh
Confidence 467889999999999999999999999998887654211 12589999999975443
No 76
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=62.70 E-value=8.7 Score=39.56 Aligned_cols=49 Identities=22% Similarity=0.344 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccC
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDND 306 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDND 306 (532)
.++++++.+++.+.|.++-|||--+++.|..++-. ..+++|.||-|- .|
T Consensus 76 ~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~-----~~~P~i~IPTTa-tg 124 (364)
T 3iv7_A 76 VAERARAVATDNEIDLLVCVGGGSTIGLAKAIAMT-----TALPIVAIPTTY-AG 124 (364)
T ss_dssp HHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHH-----HCCCEEEEECSS-SC
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhc-----cCCCEEEEcCCc-cc
Confidence 46788999999999999999999999999888752 258899999997 54
No 77
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}
Probab=62.41 E-value=20 Score=34.09 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=50.3
Q ss_pred eEEEEcccccccccCCce------eec-CCHHHHhhhhhcCCcceecccCC--ccHHHHHHHHHHhCCcEEEEeCChhh
Q 009559 207 NIVGIPFGYRGFCDKELT------EMP-LSRKVVQNIHLSGGSLLGVSRGA--PTVSEIVDSMEERGINMLFVLGGNGT 276 (532)
Q Consensus 207 ~V~Gi~~Gy~GL~~~~~~------~i~-Lt~~~V~~i~~~GGSiLGTSR~~--~~~~~ivd~L~~~gId~L~vIGGdGT 276 (532)
-++|+-.|..=|++.++. ++. ++++..+.+...| .++-....+ -|.+++++.+.+++.+-++++|+-|.
T Consensus 24 ~~i~~DgGa~~l~~~g~~Pd~ivGD~DSi~~~~~~~~~~~~-~i~~~p~eKD~TD~e~Al~~a~~~~~~~I~i~Ga~Gg 101 (212)
T 3l8m_A 24 HWIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQQQI-EINPYNSEKDDTDLALGIDQAVKRGYRNIDVYGATGG 101 (212)
T ss_dssp EEEEETHHHHHHHHTTCCCSEEESCCCCSCHHHHHHHHHHT-BCCCCC---CBCHHHHHHHHHHHTTCCEEEEESCSSS
T ss_pred EEEEECHHHHHHHHCCCCccEEEeCcccCCHHHHHHHhcCC-cEEEECCcCCCCHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence 588899998877764331 122 6888888887776 666544432 37899999999999999999999886
No 78
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=62.05 E-value=10 Score=31.64 Aligned_cols=61 Identities=20% Similarity=0.404 Sum_probs=51.0
Q ss_pred hhhhcCCcceecccCCccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceE
Q 009559 235 NIHLSGGSLLGVSRGAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAV 296 (532)
Q Consensus 235 ~i~~~GGSiLGTSR~~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~V 296 (532)
.-|+.+|..+.|.-..+++..|++.++.+|--.++.+-|- |+...+.+..|+++.|..-.|
T Consensus 22 akhnypgryirtatssqdirdiiksmkdngkplvvfvnga-sqndvnefqneakkegvsydv 82 (112)
T 2lnd_A 22 AKHNYPGRYIRTATSSQDIRDIIKSMKDNGKPLVVFVNGA-SQNDVNEFQNEAKKEGVSYDV 82 (112)
T ss_dssp HHHHSCTTTEEEECSHHHHHHHHHHHTTCCSCEEEEECSC-CHHHHHHHHHHHHHHTCEEEE
T ss_pred hhcCCCCceeeeccchhhHHHHHHHHHhcCCeEEEEecCc-ccccHHHHHHHHHhcCcchhh
Confidence 3578899999998888899999999999999888888775 567788999999998865444
No 79
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=61.84 E-value=44 Score=31.39 Aligned_cols=123 Identities=13% Similarity=0.027 Sum_probs=65.7
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccH
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTV 253 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~ 253 (532)
..+||+++..-.-|=...++.++...+..+|+. +.-.. ..+. + ....
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~~-------~~~~-----~--------------------~~~~ 54 (290)
T 3clk_A 8 SNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYN-LIIVY-------SGSA-----D--------------------PEEQ 54 (290)
T ss_dssp CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCE-EEEEC-----------------------------------------
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCe-EEEEe-------CCCC-----C--------------------HHHH
Confidence 357999998777788889999999888888873 32110 0000 0 0011
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhh--HHHHHHHHHHHHH
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDT--AVEEAQRAINSAY 331 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdT--Av~~a~~aI~~a~ 331 (532)
.++++.+...++|++++.+.+.+- ...+++++ .+++||.+-..++++ -.++++|- +...+++.+..
T Consensus 55 ~~~~~~l~~~~vdgiI~~~~~~~~----~~~~~l~~--~~iPvV~~~~~~~~~----~~~V~~D~~~~g~~a~~~L~~-- 122 (290)
T 3clk_A 55 KHALLTAIERPVMGILLLSIALTD----DNLQLLQS--SDVPYCFLSMGFDDD----RPFISSDDEDIGYQATNLLIN-- 122 (290)
T ss_dssp -CHHHHHHSSCCSEEEEESCC--------CHHHHHC--C--CEEEESCC--CC----SCEEECCHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHhcCCCEEEEecccCCH----HHHHHHHh--CCCCEEEEcCCCCCC----CCEEEeChHHHHHHHHHHHHH--
Confidence 245666777899999999887542 12233433 357787764444332 22455543 33333333222
Q ss_pred HhhhhccccEEEEE
Q 009559 332 IEAHSAYHGIGIVK 345 (532)
Q Consensus 332 ~eA~S~~~~V~vVe 345 (532)
.. +++|+++-
T Consensus 123 ---~G-~~~i~~i~ 132 (290)
T 3clk_A 123 ---EG-HRQIGIAG 132 (290)
T ss_dssp ---TT-CCSEEEES
T ss_pred ---cC-CCEEEEEe
Confidence 13 56787763
No 80
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=61.39 E-value=1.1e+02 Score=28.72 Aligned_cols=124 Identities=11% Similarity=0.071 Sum_probs=70.5
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccH
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTV 253 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~ 253 (532)
..+||+++..-.-|=...++.++...+..+|+. +.-.. .+ ......
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~~--------~~-------------------------~~~~~~ 53 (290)
T 2rgy_A 8 LGIIGLFVPTFFGSYYGTILKQTDLELRAVHRH-VVVAT--------GC-------------------------GESTPR 53 (290)
T ss_dssp CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCE-EEEEC--------CC-------------------------SSSCHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCE-EEEEe--------CC-------------------------Cchhhh
Confidence 357999987766777888889998888888873 42100 00 001122
Q ss_pred HH---HHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhh--HHHHHHHHHH
Q 009559 254 SE---IVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDT--AVEEAQRAIN 328 (532)
Q Consensus 254 ~~---ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdT--Av~~a~~aI~ 328 (532)
.+ +++.+...++|++++.+.+.+... + +.+++. +++||.+-..++++ . -.++++|- +...+++.+.
T Consensus 54 ~~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~-~~l~~~--~iPvV~~~~~~~~~--~-~~~V~~D~~~~g~~a~~~L~ 124 (290)
T 2rgy_A 54 EQALEAVRFLIGRDCDGVVVISHDLHDED---L-DELHRM--HPKMVFLNRAFDAL--P-DASFCPDHRRGGELAAATLI 124 (290)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSSSCHHH---H-HHHHHH--CSSEEEESSCCTTS--G-GGEECCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcCccEEEEecCCCCHHH---H-HHHhhc--CCCEEEEccccCCC--C-CCEEEeCcHHHHHHHHHHHH
Confidence 34 778888899999999998765221 2 333333 46677653333221 1 13455553 3333333332
Q ss_pred HHHHhhhhccccEEEEEe
Q 009559 329 SAYIEAHSAYHGIGIVKL 346 (532)
Q Consensus 329 ~a~~eA~S~~~~V~vVev 346 (532)
. .. +++|+++--
T Consensus 125 ~-----~G-~~~I~~i~~ 136 (290)
T 2rgy_A 125 E-----HG-HRKLAVISG 136 (290)
T ss_dssp H-----TT-CCSEEEEES
T ss_pred H-----CC-CceEEEEeC
Confidence 2 13 567887753
No 81
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=61.34 E-value=24 Score=34.18 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=62.9
Q ss_pred cchHHHHHHHHHHHHHH-cCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceeccc---CCccHHHHHHHHH
Q 009559 186 CPGLNDVIRHIVITLEI-YGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSR---GAPTVSEIVDSME 261 (532)
Q Consensus 186 cPGlNavIr~iv~~l~~-ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR---~~~~~~~ivd~L~ 261 (532)
+|.-+...+.+++.+.. +|+++|.-+... ..+ -..+.....+.+...|+++..... +..+....++.|+
T Consensus 118 ~~~~~~~~~~~~~~l~~~~g~~~iaii~~~------~~~-~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~ 190 (356)
T 3ipc_A 118 CGRDDQQGGIAGKYLADHFKDAKVAIIHDK------TPY-GQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMK 190 (356)
T ss_dssp SCCHHHHHHHHHHHHHHHCTTCCEEEEECS------SHH-HHHHHHHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHhcCCCEEEEEeCC------ChH-HHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHH
Confidence 34445566777777754 588776544321 111 001112233445566777655433 3346788899999
Q ss_pred HhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 262 ERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 262 ~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
+.+.+++|+.+-+... ..+.+.+++.|+++++++.
T Consensus 191 ~~~~d~v~~~~~~~~a---~~~~~~~~~~g~~~~~~~~ 225 (356)
T 3ipc_A 191 EAGVSIIYWGGLHTEA---GLIIRQAADQGLKAKLVSG 225 (356)
T ss_dssp HTTCCEEEEESCHHHH---HHHHHHHHHHTCCCEEEEC
T ss_pred hcCCCEEEEccCchHH---HHHHHHHHHCCCCCcEEEe
Confidence 9999999987766543 3445667778888887764
No 82
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=61.31 E-value=10 Score=38.77 Aligned_cols=49 Identities=22% Similarity=0.326 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccC
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDND 306 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDND 306 (532)
.++++++.+++.+.|.++-|||--+++.|..++-. ..+++|.||-|- .|
T Consensus 75 ~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~-----~~~p~i~IPTTa-tg 123 (353)
T 3hl0_A 75 VTKTAVEAYRAAGADCVVSLGGGSTTGLGKAIALR-----TDAAQIVIPTTY-AG 123 (353)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH-----HCCEEEEEECSS-CC
T ss_pred HHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhc-----cCCCEEEEeCCc-hh
Confidence 46788899999999999999999999998888752 258999999997 54
No 83
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=61.11 E-value=1.1e+02 Score=28.64 Aligned_cols=121 Identities=11% Similarity=0.050 Sum_probs=69.5
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc-c
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP-T 252 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~-~ 252 (532)
..+||+++..-.-|-...++.++...+..+|+. +.-+. +.... .
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~-~~~~~----------------------------------~~~~~~~ 52 (285)
T 3c3k_A 8 TGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYR-ILLCN----------------------------------TESDLAR 52 (285)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE-EEEEE----------------------------------CTTCHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCE-EEEEe----------------------------------CCCCHHH
Confidence 357999997766788888889998888888873 32100 00001 1
Q ss_pred HHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCC-CccCChh--hHHHHHHHHHHH
Q 009559 253 VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLM-DKTFGFD--TAVEEAQRAINS 329 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~t-D~SfGFd--TAv~~a~~aI~~ 329 (532)
..++++.+...++|++++.+.+.+-. .+ +.++ . +++||.+ |.+++.. -.++++| .+...+++.+..
T Consensus 53 ~~~~~~~l~~~~vdgiI~~~~~~~~~---~~-~~l~-~--~iPvV~~----~~~~~~~~~~~V~~D~~~~g~~a~~~L~~ 121 (285)
T 3c3k_A 53 SRSCLTLLSGKMVDGVITMDALSELP---EL-QNII-G--AFPWVQC----AEYDPLSTVSSVSIDDVAASEYVVDQLVK 121 (285)
T ss_dssp HHHHTHHHHTTCCSEEEECCCGGGHH---HH-HHHH-T--TSSEEEE----SSCCTTSSSCEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCChH---HH-HHHh-c--CCCEEEE----ccccCCCCCCEEEEChHHHHHHHHHHHHH
Confidence 23567778889999999998875422 22 3333 3 4677765 3333211 1245544 333344333322
Q ss_pred HHHhhhhccccEEEEEe
Q 009559 330 AYIEAHSAYHGIGIVKL 346 (532)
Q Consensus 330 a~~eA~S~~~~V~vVev 346 (532)
.. +++|+++--
T Consensus 122 -----~G-~~~I~~i~~ 132 (285)
T 3c3k_A 122 -----SG-KKRIALINH 132 (285)
T ss_dssp -----TT-CCCEEEEEC
T ss_pred -----cC-CCeEEEEeC
Confidence 13 567877753
No 84
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=60.83 E-value=70 Score=30.28 Aligned_cols=123 Identities=12% Similarity=0.066 Sum_probs=71.0
Q ss_pred CcEEEEEeCC-----CCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceeccc
Q 009559 174 EVKAAIVTCG-----GLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSR 248 (532)
Q Consensus 174 ~~kiaIvt~G-----G~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR 248 (532)
..+||+++.. -.-|=...++.++...+..+|+. +.-+ ..+ .
T Consensus 22 ~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~--------~~~-------------------------~ 67 (305)
T 3huu_A 22 TLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYS-TRMT--------VSE-------------------------N 67 (305)
T ss_dssp CCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCE-EEEC--------CCS-------------------------S
T ss_pred CCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCE-EEEE--------eCC-------------------------C
Confidence 4579999887 56677788888998888888873 4210 000 0
Q ss_pred CCccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCC-CccCChh--hHHHHHHH
Q 009559 249 GAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLM-DKTFGFD--TAVEEAQR 325 (532)
Q Consensus 249 ~~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~t-D~SfGFd--TAv~~a~~ 325 (532)
......++++.|...++|++++++.+.+-. ..+.+++. +++||.+ |+++... ..+++.| .+...+++
T Consensus 68 ~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~--~iPvV~i----~~~~~~~~~~~V~~D~~~~g~~a~~ 137 (305)
T 3huu_A 68 SGDLYHEVKTMIQSKSVDGFILLYSLKDDP----IEHLLNEF--KVPYLIV----GKSLNYENIIHIDNDNIDAAYQLTQ 137 (305)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEESSCBTTCH----HHHHHHHT--TCCEEEE----SCCCSSTTCCEEECCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCCEEEEeCCcCCcH----HHHHHHHc--CCCEEEE----CCCCcccCCcEEEeCHHHHHHHHHH
Confidence 001224677888899999999999876532 22334443 4677754 4443211 1234443 33334443
Q ss_pred HHHHHHHhhhhccccEEEEEe
Q 009559 326 AINSAYIEAHSAYHGIGIVKL 346 (532)
Q Consensus 326 aI~~a~~eA~S~~~~V~vVev 346 (532)
.+-. .. +++|+++--
T Consensus 138 ~L~~-----~G-~~~I~~i~~ 152 (305)
T 3huu_A 138 YLYH-----LG-HRHILFLQE 152 (305)
T ss_dssp HHHH-----TT-CCSEEEEEE
T ss_pred HHHH-----CC-CCeEEEEcC
Confidence 3322 13 567877753
No 85
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=60.79 E-value=9.8 Score=39.01 Aligned_cols=47 Identities=23% Similarity=0.377 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeeccc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTI 303 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTI 303 (532)
.++++++.+++.+.|.++-|||--++..|..++-. ..+++|.||-|-
T Consensus 77 ~v~~~~~~~~~~~~D~IIavGGGsviD~aK~iA~~-----~~~p~i~IPTT~ 123 (358)
T 3jzd_A 77 SARDATARAREAGADCAVAVGGGSTTGLGKAIALE-----TGMPIVAIPTTY 123 (358)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHH-----HCCCEEEEECSS
T ss_pred HHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHhc-----cCCCEEEEeCCc
Confidence 45688899999999999999999999998888752 257899999984
No 86
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=60.44 E-value=14 Score=37.77 Aligned_cols=56 Identities=20% Similarity=0.343 Sum_probs=44.1
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcC---------------CCceEeeeecccccCC
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRR---------------MKVAVVGVPKTIDNDI 307 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~---------------~~I~VIGIPKTIDNDI 307 (532)
.++++++.+++.++|.++-|||--.+..|..++-.....+ -.+++|.||-|--.|-
T Consensus 76 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gtgS 146 (386)
T 1rrm_A 76 VVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAGTAA 146 (386)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSSCCT
T ss_pred HHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeCCCCchh
Confidence 4578899999999999999999999999888876542211 2589999999975443
No 87
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=60.14 E-value=19 Score=35.04 Aligned_cols=104 Identities=15% Similarity=0.092 Sum_probs=62.8
Q ss_pred cchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceeccc---CCccHHHHHHHHHH
Q 009559 186 CPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSR---GAPTVSEIVDSMEE 262 (532)
Q Consensus 186 cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR---~~~~~~~ivd~L~~ 262 (532)
+|.-....+.+++.+...|+++|.-+.. +..+ .........+.+...|+.+..... +..+....++.+++
T Consensus 140 ~~~~~~~~~~~~~~l~~~g~~~ia~i~~------~~~~-~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~~~~ 212 (386)
T 3sg0_A 140 VPNDDIMAEAIGKYIAKTGAKKVGYIGF------SDAY-GEGYYKVLAAAAPKLGFELTTHEVYARSDASVTGQVLKIIA 212 (386)
T ss_dssp SCCHHHHHHHHHHHHHHTTCCEEEEEEE------SSHH-HHHHHHHHHHHHHHHTCEECCCEEECTTCSCCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEEEec------CchH-HHHHHHHHHHHHHHcCCEEEEEEeeCCCCCcHHHHHHHHHh
Confidence 3445567778888888889987755521 1111 011112233345556777664432 33467788889999
Q ss_pred hCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 263 RGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 263 ~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
.+.+++|+.+-... +..+.+.+++.|++.++++.
T Consensus 213 ~~~dav~~~~~~~~---a~~~~~~~~~~g~~~~~~~~ 246 (386)
T 3sg0_A 213 TKPDAVFIASAGTP---AVLPQKALRERGFKGAIYQT 246 (386)
T ss_dssp TCCSEEEEECCSGG---GHHHHHHHHHTTCCSEEECC
T ss_pred cCCCEEEEecCcch---HHHHHHHHHHcCCCCcEEec
Confidence 99999988764332 23344667778888776654
No 88
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=60.09 E-value=1.1e+02 Score=28.43 Aligned_cols=86 Identities=17% Similarity=0.099 Sum_probs=53.6
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc-cH
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP-TV 253 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~-~~ 253 (532)
.+||++...-.-|-...++.++...+..+|+. +.-+ . +...+ ..
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~-~~~~--------~--------------------------~~~~~~~~ 47 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYE-ATIF--------D--------------------------SQNDTAKE 47 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCE-EEEE--------E--------------------------CTTCHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCE-EEEe--------C--------------------------CCCCHHHH
Confidence 47899987766788888999998888888873 3210 0 00011 12
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
.+.++.|...++|++++.+.+.+.. ....+++++. +++||.+
T Consensus 48 ~~~~~~l~~~~vdgiI~~~~~~~~~--~~~~~~~~~~--~iPvV~~ 89 (290)
T 2fn9_A 48 SAHFDAIIAAGYDAIIFNPTDADGS--IANVKRAKEA--GIPVFCV 89 (290)
T ss_dssp HHHHHHHHHTTCSEEEECCSCTTTT--HHHHHHHHHT--TCCEEEE
T ss_pred HHHHHHHHHcCCCEEEEecCChHHH--HHHHHHHHHC--CCeEEEE
Confidence 3567777889999999998765321 1122334443 4677765
No 89
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=59.94 E-value=23 Score=33.26 Aligned_cols=123 Identities=8% Similarity=0.000 Sum_probs=68.1
Q ss_pred CCcEEEEEeC-CCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc
Q 009559 173 EEVKAAIVTC-GGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP 251 (532)
Q Consensus 173 ~~~kiaIvt~-GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~ 251 (532)
+..+||+++- .-.-|-...++.++-..+.++|+. +.-+... .+ ..
T Consensus 10 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~~~~------~~---------------------------~~ 55 (289)
T 3g85_A 10 SKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYN-YNVVICP------YK---------------------------TD 55 (289)
T ss_dssp -CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTC-SEEEEEE------EC---------------------------TT
T ss_pred CCceEEEEeccccchHHHHHHHHHHHHHHHHcCCe-EEEEecC------CC---------------------------ch
Confidence 3457999986 556788889999999988888874 2211000 00 00
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhh--HHHHHHHHHHH
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDT--AVEEAQRAINS 329 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdT--Av~~a~~aI~~ 329 (532)
...++++.+...++|++++.+-+.+. ..+.+ ....+++||.+ |++.+.. .++++|- +...+++.+..
T Consensus 56 ~~~~~~~~l~~~~vdgiIi~~~~~~~---~~~~~---~~~~~iPvV~~----~~~~~~~-~~V~~D~~~~~~~a~~~L~~ 124 (289)
T 3g85_A 56 CLHLEKGISKENSFDAAIIANISNYD---LEYLN---KASLTLPIILF----NRLSNKY-SSVNVDNYKMGEKASLLFAK 124 (289)
T ss_dssp CGGGCGGGSTTTCCSEEEESSCCHHH---HHHHH---HCCCSSCEEEE----SCCCSSS-EEEEECHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhccCCCEEEEecCCccc---HHHHH---hccCCCCEEEE----CCCCCCC-CEEEeCHHHHHHHHHHHHHH
Confidence 11223444566799999999887653 12221 22346778755 4444432 2455443 33333333322
Q ss_pred HHHhhhhccccEEEEEe
Q 009559 330 AYIEAHSAYHGIGIVKL 346 (532)
Q Consensus 330 a~~eA~S~~~~V~vVev 346 (532)
.. +++|+++--
T Consensus 125 -----~G-~~~i~~i~~ 135 (289)
T 3g85_A 125 -----KR-YKSAAAILT 135 (289)
T ss_dssp -----TT-CCBCEEEEC
T ss_pred -----cC-CCEEEEEeC
Confidence 23 567877753
No 90
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=57.30 E-value=34 Score=33.08 Aligned_cols=102 Identities=13% Similarity=0.166 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceeccc---CCccHHHHHHHHHHhC
Q 009559 188 GLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSR---GAPTVSEIVDSMEERG 264 (532)
Q Consensus 188 GlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR---~~~~~~~ivd~L~~~g 264 (532)
--....+.+++.+...|+++|.-+.. +..+ -...-....+.+...|+++..... +..+...+++.|++.+
T Consensus 122 ~~~~~~~~~~~~l~~~g~~~ia~i~~------~~~~-~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~ 194 (358)
T 3hut_A 122 TPAFEGPNNAAWMIGDGFTSVAVIGV------TTDW-GLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDEA 194 (358)
T ss_dssp CGGGHHHHHHHHHHHTTCCEEEEEEE------SSHH-HHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEEec------CcHH-HHHHHHHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHHhcC
Confidence 33445667777777678877654421 1111 001112223345556776654422 3356778888999999
Q ss_pred CcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 265 INMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 265 Id~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
.+++|+.+... .|..+.+.+++.|+++++++.
T Consensus 195 ~d~i~~~~~~~---~a~~~~~~~~~~g~~~p~~~~ 226 (358)
T 3hut_A 195 PQAIYLAMAYE---DAAPFLRALRARGSALPVYGS 226 (358)
T ss_dssp CSEEEEESCHH---HHHHHHHHHHHTTCCCCEEEC
T ss_pred CCEEEEccCch---HHHHHHHHHHHcCCCCcEEec
Confidence 99988876442 233455677788888887764
No 91
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=56.73 E-value=19 Score=36.94 Aligned_cols=55 Identities=15% Similarity=0.239 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhc-------------CCCceEeeeecccccC
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKR-------------RMKVAVVGVPKTIDND 306 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr-------------~~~I~VIGIPKTIDND 306 (532)
.++++++.+++.++|.++-|||--++..|..++-..... +-.+++|.||-|--.|
T Consensus 80 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gtg 147 (387)
T 3bfj_A 80 NVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNTTAGTA 147 (387)
T ss_dssp HHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECSTTCC
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCCcc
Confidence 457889999999999999999999999988887542210 1258999999997433
No 92
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=56.67 E-value=41 Score=31.53 Aligned_cols=69 Identities=12% Similarity=-0.015 Sum_probs=49.3
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceeccc--CCc
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSR--GAP 251 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR--~~~ 251 (532)
..+||+++..-.-|-...++.++.+.+..+|++ +.-+. +.. ...
T Consensus 5 ~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~-~~~~~---------------------------------~~~~~~~~ 50 (304)
T 3o1i_D 5 DEKICAIYPHLKDSYWLSVNYGMVSEAEKQGVN-LRVLE---------------------------------AGGYPNKS 50 (304)
T ss_dssp CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTCE-EEEEE---------------------------------CSSTTCHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCe-EEEEc---------------------------------CCCCCCHH
Confidence 468999998888888899999999988888873 32110 000 011
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhh
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGT 276 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT 276 (532)
...+.++.+...++|++++.+.+..
T Consensus 51 ~~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 51 RQEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp HHHHHHHHHHHHTCSEEEECCSSTT
T ss_pred HHHHHHHHHHHcCCCEEEEeCCChh
Confidence 2345778888899999999987765
No 93
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=55.33 E-value=1.4e+02 Score=28.22 Aligned_cols=176 Identities=13% Similarity=0.055 Sum_probs=85.8
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC-ccH
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA-PTV 253 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~-~~~ 253 (532)
.+||+++..-.- -...++.++...+..+|++ +.-+. ++... ...
T Consensus 2 ~~Ig~i~~~~~~-~~~~~~~gi~~~~~~~g~~-~~~~~---------------------------------~~~~~~~~~ 46 (313)
T 2h3h_A 2 LTIGVIGKSVHP-YWSQVEQGVKAAGKALGVD-TKFFV---------------------------------PQKEDINAQ 46 (313)
T ss_dssp CEEEEECSCSSH-HHHHHHHHHHHHHHHHTCE-EEEEC---------------------------------CSSSCHHHH
T ss_pred eEEEEEeCCCcH-HHHHHHHHHHHHHHHcCCE-EEEEC---------------------------------CCCCCHHHH
Confidence 578888755433 5566777777777777762 32100 00001 112
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCC--CccCChhh--HHHHHHHHHHH
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLM--DKTFGFDT--AVEEAQRAINS 329 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~t--D~SfGFdT--Av~~a~~aI~~ 329 (532)
.++++.|...++|++++.+.+.+.. ....+.+.+. +|+||.+ |++.+.. ..++++|- +...+++.+..
T Consensus 47 ~~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~--~iPvV~~----~~~~~~~~~~~~V~~d~~~~g~~a~~~L~~ 118 (313)
T 2h3h_A 47 LQMLESFIAEGVNGIAIAPSDPTAV--IPTIKKALEM--GIPVVTL----DTDSPDSGRYVYIGTDNYQAGYTAGLIMKE 118 (313)
T ss_dssp HHHHHHHHHTTCSEEEECCSSTTTT--HHHHHHHHHT--TCCEEEE----SSCCTTSCCSCEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCChHHH--HHHHHHHHHC--CCeEEEe----CCCCCCcceeEEECcCHHHHHHHHHHHHHH
Confidence 3567777789999999988765321 1122333333 4677765 4444321 23455543 33333333222
Q ss_pred HHHhhhhccccEEEEEec-C------CCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccC--ceEEE
Q 009559 330 AYIEAHSAYHGIGIVKLM-G------RSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKG--SAVVC 400 (532)
Q Consensus 330 a~~eA~S~~~~V~vVevM-G------R~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg--~~VVV 400 (532)
.... +++|+++--. + |..||..+ |+.....+.-+-...++ .+.-.+.+++.++... -+|++
T Consensus 119 ---~~~G-~~~I~~i~~~~~~~~~~~R~~gf~~~---l~~~g~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~ai~~ 188 (313)
T 2h3h_A 119 ---LLGG-KGKVVIGTGSLTAMNSLQRIQGFKDA---IKDSEIEIVDILNDEED---GARAVSLAEAALNAHPDLDAFFG 188 (313)
T ss_dssp ---HHTS-CSEEEEEESCSSCHHHHHHHHHHHHH---HTTSSCEEEEEEECSSC---HHHHHHHHHHHHHHCTTCCEEEE
T ss_pred ---HcCC-CCEEEEEECCCCCccHHHHHHHHHHH---hcCCCCEEEEeecCCCC---HHHHHHHHHHHHHHCcCceEEEE
Confidence 1112 4568777533 1 33344433 33222333221112232 2344566677766543 45555
Q ss_pred eec
Q 009559 401 VAE 403 (532)
Q Consensus 401 VAE 403 (532)
.+.
T Consensus 189 ~~d 191 (313)
T 2h3h_A 189 VYA 191 (313)
T ss_dssp CST
T ss_pred cCC
Confidence 443
No 94
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=54.83 E-value=1.3e+02 Score=27.68 Aligned_cols=121 Identities=8% Similarity=-0.049 Sum_probs=65.0
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccH
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTV 253 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~ 253 (532)
..+||++...-.-|=...++.++...+..+|+. +.-+ . +.......
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~-~~~~--------~-------------------------~~~~~~~~ 53 (277)
T 3e61_A 8 SKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQ-VLIG--------N-------------------------SDNDIKKA 53 (277)
T ss_dssp --CEEEEESCTTSHHHHHHHHHHHHHHHHTTCC-EEEE--------E-------------------------CTTCHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCE-EEEE--------e-------------------------CCCCHHHH
Confidence 356899988777788888999998888888874 3210 0 00001123
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHH-HHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHHHHH
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHN-ECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYI 332 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~e-e~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~a~~ 332 (532)
.++++.+...++|++++.+.+. . . .+ .+.+. +++||. +|++.+..+ ++++|-. +.+..+.+.+..
T Consensus 54 ~~~~~~l~~~~~dgiIi~~~~~--~---~-~~~~l~~~--~iPvV~----~~~~~~~~~-~V~~D~~-~~g~~a~~~L~~ 119 (277)
T 3e61_A 54 QGYLATFVSHNCTGMISTAFNE--N---I-IENTLTDH--HIPFVF----IDRINNEHN-GISTNHF-KGGQLQAEVVRK 119 (277)
T ss_dssp HHHHHHHHHTTCSEEEECGGGH--H---H-HHHHHHHC---CCEEE----GGGCC----------HH-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEecCCh--H---H-HHHHHHcC--CCCEEE----EeccCCCCC-eEEechH-HHHHHHHHHHHH
Confidence 4678888899999999998432 1 1 23 44444 466774 466665444 6776642 122222222221
Q ss_pred hhhhccccEEEEE
Q 009559 333 EAHSAYHGIGIVK 345 (532)
Q Consensus 333 eA~S~~~~V~vVe 345 (532)
.. +++|+++-
T Consensus 120 --~G-~~~i~~i~ 129 (277)
T 3e61_A 120 --GK-GKNVLIVH 129 (277)
T ss_dssp --TT-CCSEEEEE
T ss_pred --CC-CCeEEEEe
Confidence 12 55687764
No 95
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=54.64 E-value=13 Score=37.90 Aligned_cols=120 Identities=19% Similarity=0.257 Sum_probs=55.7
Q ss_pred ccccCCCCc-EEEEEeCCCCcchHHHHHHHHHHHHHHc-CCceEEEEcccccccccCCceeecCCHHHHhhhhh--cCCc
Q 009559 167 EIYFKPEEV-KAAIVTCGGLCPGLNDVIRHIVITLEIY-GVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHL--SGGS 242 (532)
Q Consensus 167 ~i~f~p~~~-kiaIvt~GG~cPGlNavIr~iv~~l~~y-gv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~--~GGS 242 (532)
..||....+ ||+||+ |--|+.--. ..+++.+.+. +++-.+++.+.-.-..+.-++...++++. .+.. .+++
T Consensus 17 ~~~~~~~~m~ki~~v~--Gtr~~~~~~-a~li~~l~~~~~~~~~~~~tG~h~~~~~~~~~~~~i~~~~--~l~~~~~~~~ 91 (396)
T 3dzc_A 17 NLYFQSNAMKKVLIVF--GTRPEAIKM-APLVQQLCQDNRFVAKVCVTGQHREMLDQVLELFSITPDF--DLNIMEPGQT 91 (396)
T ss_dssp -------CCEEEEEEE--CSHHHHHHH-HHHHHHHHHCTTEEEEEEECCSSSHHHHHHHHHTTCCCSE--ECCCCCTTCC
T ss_pred hhhHHhCCCCeEEEEE--eccHhHHHH-HHHHHHHHhCCCCcEEEEEecccHHHHHHHHHhcCCCCce--eeecCCCCCC
Confidence 356665554 888888 677875443 5567777655 55322343321110000000001111110 1111 1112
Q ss_pred ceecccCCccHHHHHHHHHHhCCcEEEEeCChhh-HHHHHHHHHHHHhcCCCceEeee
Q 009559 243 LLGVSRGAPTVSEIVDSMEERGINMLFVLGGNGT-HAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 243 iLGTSR~~~~~~~ivd~L~~~gId~L~vIGGdGT-~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
.... ...-..++.+.|++.+-|.+++.|+-.+ +.++. . +++ .+|+|+.+
T Consensus 92 ~~~~--~~~~~~~l~~~l~~~kPDvVi~~g~~~~~~~~~~-a---a~~--~~IPv~h~ 141 (396)
T 3dzc_A 92 LNGV--TSKILLGMQQVLSSEQPDVVLVHGDTATTFAASL-A---AYY--QQIPVGHV 141 (396)
T ss_dssp HHHH--HHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHH-H---HHT--TTCCEEEE
T ss_pred HHHH--HHHHHHHHHHHHHhcCCCEEEEECCchhHHHHHH-H---HHH--hCCCEEEE
Confidence 2111 0113567788899999999999998776 33332 2 222 45777766
No 96
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=54.62 E-value=17 Score=37.57 Aligned_cols=54 Identities=20% Similarity=0.225 Sum_probs=42.2
Q ss_pred cHHHHHHHHHHhC---CcEEEEeCChhhHHHHHHHHHHHHhc-------------CCCceEeeeeccccc
Q 009559 252 TVSEIVDSMEERG---INMLFVLGGNGTHAGANAIHNECRKR-------------RMKVAVVGVPKTIDN 305 (532)
Q Consensus 252 ~~~~ivd~L~~~g---Id~L~vIGGdGT~~gA~~L~ee~~kr-------------~~~I~VIGIPKTIDN 305 (532)
.++++++.+++.+ .|.++-|||--++..|..++-..... +-.+++|.||-|--.
T Consensus 94 ~v~~~~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagt 163 (375)
T 3rf7_A 94 QVDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPTVSGT 163 (375)
T ss_dssp HHHHHHHHHHHHCSSCCSEEEEEESHHHHHHHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEESSCSS
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcCCCcc
Confidence 4678899999999 99999999999999998887543111 115789999988643
No 97
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=53.80 E-value=3.6 Score=43.08 Aligned_cols=105 Identities=22% Similarity=0.275 Sum_probs=66.9
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceE--EEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCcc
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNI--VGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPT 252 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V--~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~ 252 (532)
.|+.|||..+..+- ....+...|...|++ + +-+..| . .+-....
T Consensus 63 ~rvlIVtd~~v~~~---~~~~v~~~L~~~g~~-~~~~~~~~g---------------------------E---~~kt~~~ 108 (390)
T 3okf_A 63 QKVVIVTNHTVAPL---YAPAIISLLDHIGCQ-HALLELPDG---------------------------E---QYKTLET 108 (390)
T ss_dssp CEEEEEEETTTHHH---HHHHHHHHHHHHTCE-EEEEEECSS---------------------------G---GGCBHHH
T ss_pred CEEEEEECCcHHHH---HHHHHHHHHHHcCCe-EEEEEECCC---------------------------c---CCchHHH
Confidence 58999998777653 455556666667763 3 111111 0 0001124
Q ss_pred HHHHHHHHHHhCC---cEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhH
Q 009559 253 VSEIVDSMEERGI---NMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTA 319 (532)
Q Consensus 253 ~~~ivd~L~~~gI---d~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTA 319 (532)
.+++++.+.+.++ |.++-+||--.+..|..++-.. .| ++++|.||-|. +..+|.+.|--|+
T Consensus 109 v~~~~~~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~~-~r--gip~I~IPTTl---la~vDssvggkt~ 172 (390)
T 3okf_A 109 FNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAACY-QR--GVDFIQIPTTL---LSQVDSSVGGKTA 172 (390)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHB-TT--CCEEEEEECSH---HHHHHTSSSCEEE
T ss_pred HHHHHHHHHhcCCCcCcEEEEECCcHHhhHHHHHHHHh-cC--CCCEEEeCCCC---ccccccCcCCeEE
Confidence 6788999999999 6999999999988887776321 23 58999999996 2333444444343
No 98
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=53.71 E-value=57 Score=31.65 Aligned_cols=106 Identities=13% Similarity=0.110 Sum_probs=63.8
Q ss_pred cchHHHHHHHHHHHHH-HcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecc--cCCccHHHHHHHHHH
Q 009559 186 CPGLNDVIRHIVITLE-IYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVS--RGAPTVSEIVDSMEE 262 (532)
Q Consensus 186 cPGlNavIr~iv~~l~-~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTS--R~~~~~~~ivd~L~~ 262 (532)
+|.-....+.++..+. ++|+++|.-+. +-. ..+. ..+.....+.+...|+++.... .+..+....++.|++
T Consensus 129 ~~~~~~~~~~~~~~l~~~~g~~~iaii~-~~~----~~~~-~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~ 202 (366)
T 3td9_A 129 CFIDPFQGAAMAVFAYKNLGAKRVVVFT-DVE----QDYS-VGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMS 202 (366)
T ss_dssp SCCHHHHHHHHHHHHHHTSCCCEEEEEE-ETT----CHHH-HHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHH
T ss_pred eCCcHHHHHHHHHHHHHhcCCcEEEEEE-eCC----CcHH-HHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHh
Confidence 4444556677788774 46988765442 111 1110 0111223344556677766543 233467788999999
Q ss_pred hCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeee
Q 009559 263 RGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVP 300 (532)
Q Consensus 263 ~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIP 300 (532)
.+.+++|+.+-+.. +..+.+.+++.|+++++++..
T Consensus 203 ~~~d~v~~~~~~~~---a~~~~~~~~~~g~~~~~~~~~ 237 (366)
T 3td9_A 203 FNPDAIYITGYYPE---IALISRQARQLGFTGYILAGD 237 (366)
T ss_dssp TCCSEEEECSCHHH---HHHHHHHHHHTTCCSEEEECG
T ss_pred cCCCEEEEccchhH---HHHHHHHHHHcCCCceEEeeC
Confidence 99999998766543 334556778889888887653
No 99
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=51.30 E-value=5.1 Score=40.84 Aligned_cols=49 Identities=22% Similarity=0.381 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHhCC---cEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeeccc
Q 009559 252 TVSEIVDSMEERGI---NMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTI 303 (532)
Q Consensus 252 ~~~~ivd~L~~~gI---d~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTI 303 (532)
..+++++.+++.++ |.++-|||--.+..|..++... .| ++++|.||-|.
T Consensus 69 ~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~ak~~A~~~-~r--gip~i~IPTTl 120 (348)
T 1ujn_A 69 VYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVAATY-LR--GVAYLAFPTTT 120 (348)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHB-TT--CCEEEEEECSH
T ss_pred HHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHHHHh-cc--CCCEEEecCcH
Confidence 46788999999998 8999999999888888777432 22 58999999885
No 100
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=51.30 E-value=1.6e+02 Score=27.51 Aligned_cols=122 Identities=9% Similarity=-0.020 Sum_probs=69.4
Q ss_pred cEEEEEeCC-C---CcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC
Q 009559 175 VKAAIVTCG-G---LCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA 250 (532)
Q Consensus 175 ~kiaIvt~G-G---~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~ 250 (532)
.+||+++.. - .-|-...++.++...+..+|+. +.-+ . .+ ...
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~-~-------~~-------------------------~~~ 50 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYF-VLPF-P-------FS-------------------------EDR 50 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCE-EEEC-C-------CC-------------------------SST
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHcCCE-EEEE-e-------CC-------------------------Cch
Confidence 478888765 4 6678888999999888888873 3210 0 00 001
Q ss_pred ccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCC-CccCChh--hHHHHHHHHH
Q 009559 251 PTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLM-DKTFGFD--TAVEEAQRAI 327 (532)
Q Consensus 251 ~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~t-D~SfGFd--TAv~~a~~aI 327 (532)
....++++.+...++|++++.+.+.+-. ..+.+.+. +++||.+ |++.+.. -.++++| .+...+++.+
T Consensus 51 ~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~--~iPvV~~----~~~~~~~~~~~V~~D~~~~g~~a~~~L 120 (287)
T 3bbl_A 51 SQIDIYRDLIRSGNVDGFVLSSINYNDP----RVQFLLKQ--KFPFVAF----GRSNPDWDFAWVDIDGTAGTRQAVEYL 120 (287)
T ss_dssp TCCHHHHHHHHTTCCSEEEECSCCTTCH----HHHHHHHT--TCCEEEE----SCCSTTCCCCEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCEEEEeecCCCcH----HHHHHHhc--CCCEEEE----CCcCCCCCCCEEEeccHHHHHHHHHHH
Confidence 1224567788889999999998765422 22334443 4677765 3333211 1245544 3344444433
Q ss_pred HHHHHhhhhccccEEEEEe
Q 009559 328 NSAYIEAHSAYHGIGIVKL 346 (532)
Q Consensus 328 ~~a~~eA~S~~~~V~vVev 346 (532)
.. .. +++|+++--
T Consensus 121 ~~-----~G-~~~I~~i~~ 133 (287)
T 3bbl_A 121 IG-----RG-HRRIAILAW 133 (287)
T ss_dssp HH-----HT-CCCEEEEEC
T ss_pred HH-----CC-CCeEEEEeC
Confidence 32 13 567877753
No 101
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=51.21 E-value=11 Score=38.60 Aligned_cols=63 Identities=24% Similarity=0.318 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHhCC---cEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHH
Q 009559 252 TVSEIVDSMEERGI---NMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAV 320 (532)
Q Consensus 252 ~~~~ivd~L~~~gI---d~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv 320 (532)
..+++++.+.+.++ |.++-+||--.+..|..++-.. .| ++++|.||-|. +..+|.+.|--|++
T Consensus 79 ~v~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~-~r--gip~i~IPTTl---la~tdS~v~~kt~I 144 (368)
T 2gru_A 79 TVTNLQERAIALGANRRTAIVAVGGGLTGNVAGVAAGMM-FR--GIALIHVPTTF---LAASDSVLSIKQAV 144 (368)
T ss_dssp HHHHHHHHHHHTTCCTTEEEEEEESHHHHHHHHHHHHHB-TT--CCEEEEEECSH---HHHHTTTSSCEEEE
T ss_pred HHHHHHHHHHhcCCCCCcEEEEECChHHHHHHHHHHHHh-cC--CCCEEEECCch---HhhcCCCcCCeEEE
Confidence 45688899999995 9999999988888887776432 23 58999999996 44555555544443
No 102
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=50.29 E-value=82 Score=29.69 Aligned_cols=123 Identities=14% Similarity=0.111 Sum_probs=70.0
Q ss_pred CcEEEEEeCCC-----CcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceeccc
Q 009559 174 EVKAAIVTCGG-----LCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSR 248 (532)
Q Consensus 174 ~~kiaIvt~GG-----~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR 248 (532)
..+||+++... .-|-...+++++-..+..+|+. ++-+ ..+ .
T Consensus 7 s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~-~~~~--------~~~-------------------------~ 52 (295)
T 3hcw_A 7 TYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYG-TQTT--------VSN-------------------------N 52 (295)
T ss_dssp SCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCE-EEEC--------CCC-------------------------S
T ss_pred CcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCE-EEEE--------cCC-------------------------C
Confidence 45799998543 3456677888888888888873 4210 000 0
Q ss_pred CCccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCC---CccCChh--hHHHHH
Q 009559 249 GAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLM---DKTFGFD--TAVEEA 323 (532)
Q Consensus 249 ~~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~t---D~SfGFd--TAv~~a 323 (532)
....-.++++.|...++|++++.+.+.+-. +.+++.+. +++||.+ |++++.. -.++++| .+...+
T Consensus 53 ~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~----~~~~l~~~--~iPvV~i----~~~~~~~~~~~~~V~~D~~~~~~~a 122 (295)
T 3hcw_A 53 MNDLMDEVYKMIKQRMVDAFILLYSKENDP----IKQMLIDE--SMPFIVI----GKPTSDIDHQFTHIDNDNILASENL 122 (295)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEESCCCTTCH----HHHHHHHT--TCCEEEE----SCCCSSGGGGSCEEEECHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCcCEEEEcCcccChH----HHHHHHhC--CCCEEEE----CCCCccccCCceEEecCcHHHHHHH
Confidence 001224677888999999999998775432 22334443 4677744 5555433 2344543 344444
Q ss_pred HHHHHHHHHhhhhccccEEEEEe
Q 009559 324 QRAINSAYIEAHSAYHGIGIVKL 346 (532)
Q Consensus 324 ~~aI~~a~~eA~S~~~~V~vVev 346 (532)
++.+-. .. +++|+++--
T Consensus 123 ~~~L~~-----~G-~~~I~~i~~ 139 (295)
T 3hcw_A 123 TRHVIE-----QG-VDELIFITE 139 (295)
T ss_dssp HHHHHH-----HC-CSEEEEEEE
T ss_pred HHHHHH-----cC-CccEEEEcC
Confidence 443332 23 567887753
No 103
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=50.24 E-value=19 Score=37.32 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=42.2
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHh-------------cCCCceEeeeeccccc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRK-------------RRMKVAVVGVPKTIDN 305 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~k-------------r~~~I~VIGIPKTIDN 305 (532)
.++++++.+++.++|.++-|||--++..|..++-.... ....+++|.||-|--.
T Consensus 89 ~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagt 155 (407)
T 1vlj_A 89 KVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTISAT 155 (407)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECSCSS
T ss_pred HHHHHHHHHHhcCCCEEEEeCChhHHHHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCCc
Confidence 45688899999999999999999999999888754210 0135899999998543
No 104
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=49.16 E-value=13 Score=38.00 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHh-------------cCCCceEeeeecc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRK-------------RRMKVAVVGVPKT 302 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~k-------------r~~~I~VIGIPKT 302 (532)
.++++++.+++.+.|.++-|||--++..|..++-.... ....+++|.||-|
T Consensus 86 ~v~~~~~~~~~~~~d~IIavGGGsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 149 (371)
T 1o2d_A 86 NVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTT 149 (371)
T ss_dssp HHHHHHHHHTTSCCSEEEEEESHHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECS
T ss_pred HHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCC
Confidence 45678888888999999999999999998888754321 0035899999999
No 105
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=48.02 E-value=20 Score=36.31 Aligned_cols=49 Identities=16% Similarity=0.320 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHhCC---cEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeeccc
Q 009559 252 TVSEIVDSMEERGI---NMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTI 303 (532)
Q Consensus 252 ~~~~ivd~L~~~gI---d~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTI 303 (532)
..+++++.+++.++ |.++-|||--.+..|..++-.. .| ++++|.||-|.
T Consensus 70 ~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~~A~~~-~r--gip~i~IPTTl 121 (343)
T 3clh_A 70 SLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSIY-FR--GIDFINIPTTL 121 (343)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHB-TT--CCEEEEEECSH
T ss_pred HHHHHHHHHHhcCCCCCceEEEECChHHHHHHHHHHHHh-cc--CCCEEEeCCch
Confidence 46789999999999 9999999998888887776432 22 58999999995
No 106
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=46.53 E-value=19 Score=36.56 Aligned_cols=49 Identities=20% Similarity=0.277 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHhCC---cEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeeccc
Q 009559 252 TVSEIVDSMEERGI---NMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTI 303 (532)
Q Consensus 252 ~~~~ivd~L~~~gI---d~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTI 303 (532)
..+++++.+++.++ |.++-|||--.+..|..++-.. + .++++|.||-|.
T Consensus 75 ~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~vA~~~-~--rgip~i~IPTT~ 126 (354)
T 1xah_A 75 QYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFVAATL-L--RGVHFIQVPTTI 126 (354)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEEESHHHHHHHHHHHHHB-T--TCCEEEEEECST
T ss_pred HHHHHHHHHHHcCCCCCceEEEECChHHHHHHHHHHHHh-c--cCCCEEEECCcc
Confidence 46789999999999 9999999999998888777432 2 258999999986
No 107
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=46.44 E-value=14 Score=37.86 Aligned_cols=46 Identities=26% Similarity=0.378 Sum_probs=37.1
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeeccc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTI 303 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTI 303 (532)
.++++++.+++ +.|.++-|||--.+..|..++-. .++++|.||-|-
T Consensus 83 ~v~~~~~~~~~-~~d~IIavGGGsv~D~aK~iA~~-----~~~p~i~IPTTa 128 (376)
T 1kq3_A 83 EIERLSGLVEE-ETDVVVGIGGGKTLDTAKAVAYK-----LKKPVVIVPTIA 128 (376)
T ss_dssp HHHHHHTTCCT-TCCEEEEEESHHHHHHHHHHHHH-----TTCCEEEEESSC
T ss_pred HHHHHHHHHhc-CCCEEEEeCCcHHHHHHHHHHHh-----cCCCEEEecCcc
Confidence 45666677777 99999999999999998888832 258999999884
No 108
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=46.05 E-value=85 Score=30.88 Aligned_cols=106 Identities=8% Similarity=-0.026 Sum_probs=64.3
Q ss_pred cchHHHHHHHHHHHHHH-cCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceeccc---CCccHHHHHHH--
Q 009559 186 CPGLNDVIRHIVITLEI-YGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSR---GAPTVSEIVDS-- 259 (532)
Q Consensus 186 cPGlNavIr~iv~~l~~-ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR---~~~~~~~ivd~-- 259 (532)
+|--+...+.+++.+.. .|+++|.-+.. -. ..+ -..+.....+.+...|+++..... +..+....+..
T Consensus 121 ~~~~~~~~~~~~~~l~~~~g~~~iaii~~-~~----~~~-g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~~~ 194 (391)
T 3eaf_A 121 APDYSTQACSGLAFLASEFGQGKLALAYD-SK----VAY-SRSPIGAIKKAAPSLGLQVVGDYDLPLRATEADAERIARE 194 (391)
T ss_dssp SCCHHHHHHHHHHHHHHHHCSEEEEEEEC-TT----CHH-HHTTHHHHHHHTGGGTEEEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEEe-cC----Chh-HHHHHHHHHHHHHHcCCceeeeeccCCCCcCHHHHHHHHH
Confidence 44556667777887765 59877654432 00 100 011122233445566777765443 33467788888
Q ss_pred HHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeee
Q 009559 260 MEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVP 300 (532)
Q Consensus 260 L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIP 300 (532)
|++.+.+++|+.+-.. .+..+.+.+++.|+++++++..
T Consensus 195 l~~~~~dav~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~ 232 (391)
T 3eaf_A 195 MLAADPDYVWCGNTIS---SCSLLGRAMAKVGLDAFLLTNV 232 (391)
T ss_dssp HHTTCCSEEEECSCHH---HHHHHHHHHHHHTCCCEEEECG
T ss_pred HHHcCCCEEEEecCcH---HHHHHHHHHHHCCCCceEEEec
Confidence 9999999998765433 2344556777889998888753
No 109
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=44.94 E-value=1.9e+02 Score=26.67 Aligned_cols=125 Identities=15% Similarity=0.099 Sum_probs=74.8
Q ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCcc
Q 009559 173 EEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPT 252 (532)
Q Consensus 173 ~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~ 252 (532)
+..+||+++..-.-|-...++.++...+.++|+. +.-+. +......
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~-~~~~~---------------------------------~~~~~~~ 51 (276)
T 3jy6_A 6 SSKLIAVIVANIDDYFSTELFKGISSILESRGYI-GVLFD---------------------------------ANADIER 51 (276)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCE-EEEEE---------------------------------CTTCHHH
T ss_pred CCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCE-EEEEe---------------------------------CCCCHHH
Confidence 4568999998877888899999999888888873 42110 0000112
Q ss_pred HHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCC-CccCChh--hHHHHHHHHHHH
Q 009559 253 VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLM-DKTFGFD--TAVEEAQRAINS 329 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~t-D~SfGFd--TAv~~a~~aI~~ 329 (532)
..++++.+...++|++++.+.+. . .+.+.+.+. +++||.+ |++++.. -.++++| .+...+++.+..
T Consensus 52 ~~~~~~~l~~~~vdgiIi~~~~~-~----~~~~~l~~~--~iPvV~i----~~~~~~~~~~~V~~D~~~~g~~a~~~L~~ 120 (276)
T 3jy6_A 52 EKTLLRAIGSRGFDGLILQSFSN-P----QTVQEILHQ--QMPVVSV----DREMDACPWPQVVTDNFEAAKAATTAFRQ 120 (276)
T ss_dssp HHHHHHHHHTTTCSEEEEESSCC-H----HHHHHHHTT--SSCEEEE----SCCCTTCSSCEEECCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCEEEEecCCc-H----HHHHHHHHC--CCCEEEE----ecccCCCCCCEEEEChHHHHHHHHHHHHH
Confidence 24677888899999999999887 2 223344443 5677755 4444322 1344544 333333333322
Q ss_pred HHHhhhhccccEEEEEecC
Q 009559 330 AYIEAHSAYHGIGIVKLMG 348 (532)
Q Consensus 330 a~~eA~S~~~~V~vVevMG 348 (532)
.. +++|+++--..
T Consensus 121 -----~G-~~~I~~i~~~~ 133 (276)
T 3jy6_A 121 -----QG-YQHVVVLTSEL 133 (276)
T ss_dssp -----TT-CCEEEEEEECS
T ss_pred -----cC-CCeEEEEecCC
Confidence 22 56787775443
No 110
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=44.83 E-value=70 Score=31.15 Aligned_cols=99 Identities=13% Similarity=0.152 Sum_probs=59.2
Q ss_pred chHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceeccc---CCccHHHHHHHHHHh
Q 009559 187 PGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSR---GAPTVSEIVDSMEER 263 (532)
Q Consensus 187 PGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR---~~~~~~~ivd~L~~~ 263 (532)
|--....+.+++.+...|+++|.-+...+ .+ -..+.....+.+...|+.+..... +..+....+..+++.
T Consensus 122 ~~~~~~~~~~~~~l~~~g~~~vaii~~~~------~~-g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~l~~i~~~ 194 (375)
T 3i09_A 122 YDTMALAKGTGSAVVKQGGKTWFFLTADY------AF-GKALEKNTADVVKANGGKVLGEVRHPLSASDFSSFLLQAQSS 194 (375)
T ss_dssp CCHHHHHHHHHHHHHHTTCCEEEEEEESS------HH-HHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHcCCceEEEEeccc------HH-HHHHHHHHHHHHHHcCCEEeeeeeCCCCCccHHHHHHHHHhC
Confidence 33334566777777777988775552111 11 001122233445567888776543 345778889999999
Q ss_pred CCcEEEEeCChhhHHHHHHHHHHHHhcCCCce
Q 009559 264 GINMLFVLGGNGTHAGANAIHNECRKRRMKVA 295 (532)
Q Consensus 264 gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~ 295 (532)
+.+++|+.+-... +..+.+.+++.|+..+
T Consensus 195 ~~d~v~~~~~~~~---~~~~~~~~~~~g~~~~ 223 (375)
T 3i09_A 195 KAQILGLANAGGD---TVNAIKAAKEFGITKT 223 (375)
T ss_dssp CCSEEEEECCHHH---HHHHHHHHHHTTGGGT
T ss_pred CCCEEEEecCchh---HHHHHHHHHHcCCCcC
Confidence 9999988654322 2335566777787664
No 111
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=44.77 E-value=2.2e+02 Score=27.40 Aligned_cols=166 Identities=7% Similarity=-0.011 Sum_probs=87.3
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccH
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTV 253 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~ 253 (532)
..+||+++..-.-|-...++.++...+..+|+. +.-+. +......
T Consensus 64 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~~----------------------------------~~~~~~~ 108 (333)
T 3jvd_A 64 SALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQ-MLVAE----------------------------------ANSVQAQ 108 (333)
T ss_dssp CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCE-EEEEE----------------------------------CCSHHHH
T ss_pred CCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCE-EEEEC----------------------------------CCChHHH
Confidence 357999998877888889999999998888873 32110 0011123
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCC-CccCChhhHHHHHHHHHHHHHH
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLM-DKTFGFDTAVEEAQRAINSAYI 332 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~t-D~SfGFdTAv~~a~~aI~~a~~ 332 (532)
.++++.|...++|++++.+. + +.+. ..+++||.+ |++.+.. ..++++|-. +.+..+.+.+.
T Consensus 109 ~~~~~~l~~~~vdGiIi~~~---------~-~~~~--~~~iPvV~~----~~~~~~~~~~~V~~D~~-~~~~~a~~~L~- 170 (333)
T 3jvd_A 109 DVVMESLISIQAAGIIHVPV---------V-GSIA--PEGIPMVQL----TRGELGPGFPRVLCDDE-AGFFQLTESVL- 170 (333)
T ss_dssp HHHHHHHHHHTCSEEEECCC---------T-TCCC---CCSCEEEE----CC----CCSCEEEECHH-HHHHHHHHHHC-
T ss_pred HHHHHHHHhCCCCEEEEcch---------H-HHHh--hCCCCEEEE----CccCCCCCCCEEEEChH-HHHHHHHHHHH-
Confidence 46788888999999999987 1 2222 235777754 4444321 134555432 22222222221
Q ss_pred hhhhccccEEEEEecC-------CCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccC-ceEEEe
Q 009559 333 EAHSAYHGIGIVKLMG-------RSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKG-SAVVCV 401 (532)
Q Consensus 333 eA~S~~~~V~vVevMG-------R~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg-~~VVVV 401 (532)
.. -+++|+++--.- |..||..+ |+..... .+++-..++. +.-.+.+++.++... -+|++.
T Consensus 171 -~~-G~~~I~~i~~~~~~~~~~~R~~Gf~~a---l~~~g~~-~~~~~~~~~~---~~~~~~~~~ll~~~~~~ai~~~ 238 (333)
T 3jvd_A 171 -GG-SGMNIAALVGEESLSTTQERMRGISHA---ASIYGAE-VTFHFGHYSV---ESGEEMAQVVFNNGLPDALIVA 238 (333)
T ss_dssp -CS-SSCEEEEEESCTTSHHHHHHHHHHHHH---HHHTTCE-EEEEECCSSH---HHHHHHHHHHHHTCCCSEEEEC
T ss_pred -HC-CCCeEEEEeCCCCCccHHHHHHHHHHH---HHHCCCC-EEEecCCCCH---HHHHHHHHHHhcCCCCcEEEEC
Confidence 12 256787775332 33455543 3222233 2222133443 345566666666443 344443
No 112
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=44.40 E-value=2.2e+02 Score=27.18 Aligned_cols=88 Identities=9% Similarity=0.017 Sum_probs=54.2
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc-cH
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP-TV 253 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~-~~ 253 (532)
.+||++...-.-|=...++.++...+..+|++ +.- . ..+.... .-
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~-~~~-~--------------------------------~~~~~d~~~q 49 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGID-VTY-D--------------------------------GPTEPSVSGQ 49 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCE-EEE-C--------------------------------CCSSCCHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCE-EEE-E--------------------------------CCCCCCHHHH
Confidence 47899987666677888888888888777762 320 0 0011111 12
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeee
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVP 300 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIP 300 (532)
.+.++.|...++|+|++.+-+.+.. ....+.+++. +|+||.+-
T Consensus 50 ~~~i~~li~~~vdgiii~~~~~~~~--~~~~~~a~~~--gipvV~~d 92 (316)
T 1tjy_A 50 VQLVNNFVNQGYDAIIVSAVSPDGL--CPALKRAMQR--GVKILTWD 92 (316)
T ss_dssp HHHHHHHHHTTCSEEEECCSSSSTT--HHHHHHHHHT--TCEEEEES
T ss_pred HHHHHHHHHcCCCEEEEeCCCHHHH--HHHHHHHHHC--cCEEEEec
Confidence 3567788889999999998776421 1122334333 47888763
No 113
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=44.37 E-value=16 Score=38.79 Aligned_cols=86 Identities=19% Similarity=0.264 Sum_probs=56.0
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHHcCCceE-EEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHH
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNI-VGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVS 254 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V-~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~ 254 (532)
|+.|||.++...+ ....+...|...|++ + +.+ |.| + -+.+. ++
T Consensus 93 rvlIVtd~~~~~~---~~~~v~~~L~~~gi~-~~~~~---~~g----e-----~~~~~--------------------v~ 136 (450)
T 1ta9_A 93 SAVVLADQNVWNI---CANKIVDSLSQNGMT-VTKLV---FGG----E-----ASLVE--------------------LD 136 (450)
T ss_dssp EEEEEEEHHHHHH---THHHHHHHHHHTTCE-EEEEE---ECS----C-----CCHHH--------------------HH
T ss_pred EEEEEECccHHHH---HHHHHHHHHHHCCCe-EEEEe---eCC----C-----CCHHH--------------------HH
Confidence 8999997665553 344555556667773 3 122 222 1 12222 33
Q ss_pred HHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeeccc
Q 009559 255 EIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTI 303 (532)
Q Consensus 255 ~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTI 303 (532)
++++.+++ +.|.++-|||--+++.|..++-. .++++|.||-|-
T Consensus 137 ~~~~~~~~-~~D~IIAvGGGSviD~AK~iA~~-----~giP~I~IPTTA 179 (450)
T 1ta9_A 137 KLRKQCPD-DTQVIIGVGGGKTMDSAKYIAHS-----MNLPSIICPTTA 179 (450)
T ss_dssp HHHTTSCT-TCCEEEEEESHHHHHHHHHHHHH-----TTCCEEEEESSC
T ss_pred HHHHHHhh-CCCEEEEeCCcHHHHHHHHHHHh-----cCCCEEEEeCCC
Confidence 44455556 89999999999999999888832 258999999993
No 114
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=43.82 E-value=58 Score=33.53 Aligned_cols=159 Identities=14% Similarity=0.165 Sum_probs=88.7
Q ss_pred cCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccC
Q 009559 170 FKPEEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRG 249 (532)
Q Consensus 170 f~p~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~ 249 (532)
+.|+.+=+|+...||--|- ..+..+..+.+.|..=|-|.+. ++.+ +++ +......|-+++.+..-
T Consensus 72 ~~~d~lvig~a~~gG~l~~---~~~~~i~~Al~~G~~Vvsglh~----~l~~-------~pe-l~~~A~~g~~i~dvr~p 136 (349)
T 2obn_A 72 YKPQVLVIGIAPKGGGIPD---DYWIELKTALQAGMSLVNGLHT----PLAN-------IPD-LNALLQPGQLIWDVRKE 136 (349)
T ss_dssp GCCSEEEECCCCCCC-SCG---GGHHHHHHHHHTTCEEEECSSS----CCTT-------CHH-HHHHCCTTCCEEETTCC
T ss_pred CCCCEEEEEecCCCCCCCH---HHHHHHHHHHHcCCcEEeCccc----hhhC-------CHH-HHHHHHcCCEEEEeccC
Confidence 4566677777778998885 3444555566788842233332 3332 244 33434446677776553
Q ss_pred CccHHHHHHHHHHhCCcEEEEeCCh---hhHHHHHHHHHHHHhcCCCceEeeeecc---cccCCCCCCccCChhhHHHHH
Q 009559 250 APTVSEIVDSMEERGINMLFVLGGN---GTHAGANAIHNECRKRRMKVAVVGVPKT---IDNDILLMDKTFGFDTAVEEA 323 (532)
Q Consensus 250 ~~~~~~ivd~L~~~gId~L~vIGGd---GT~~gA~~L~ee~~kr~~~I~VIGIPKT---IDNDI~~tD~SfGFdTAv~~a 323 (532)
+....-..-...+.....+|+.|=| |-+..+..|.+.++++|++...+.---| |+...-.+|.-+ +.++
T Consensus 137 p~~l~~~~g~~~~v~~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgqtg~~~~~~gi~~Dav~-----~df~ 211 (349)
T 2obn_A 137 PANLDVASGAARTLPCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQTGVMLEGDGVALDAVR-----VDFA 211 (349)
T ss_dssp CSSCCCCCSGGGGCSSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSHHHHHHHSCSCCGGGSB-----HHHH
T ss_pred cccccccccceeeecceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccchhhhhhcCCcchhHHH-----HHHH
Confidence 3222111122233456689999976 5568889999999999998777653333 233322233211 3333
Q ss_pred HHHHHHHHHhhhhccccEEEEEecCC
Q 009559 324 QRAINSAYIEAHSAYHGIGIVKLMGR 349 (532)
Q Consensus 324 ~~aI~~a~~eA~S~~~~V~vVevMGR 349 (532)
+-++..+..++.. .+-+-+||=.|.
T Consensus 212 aG~ve~~~~~~~~-~~d~vlVEGqGg 236 (349)
T 2obn_A 212 AGAVEQMVMRYGK-NYDILHIEGQGS 236 (349)
T ss_dssp HHHHHHHHHHHTT-TCSEEEECCCCC
T ss_pred hhhHHHHHHHhcc-CCCEEEEeCCCc
Confidence 4455555555432 345779996553
No 115
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=42.05 E-value=28 Score=35.96 Aligned_cols=49 Identities=27% Similarity=0.323 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHhC--C---cEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeeccc
Q 009559 252 TVSEIVDSMEERG--I---NMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTI 303 (532)
Q Consensus 252 ~~~~ivd~L~~~g--I---d~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTI 303 (532)
..+++++.+.+.+ + |.++-|||--.+..|..++-.. .| ++++|.||-|.
T Consensus 88 ~v~~~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~-~r--gip~i~IPTTl 141 (393)
T 1sg6_A 88 TKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTY-MR--GVRYVQVPTTL 141 (393)
T ss_dssp HHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHG-GG--CCEEEEEECSH
T ss_pred HHHHHHHHHHHcCCCCCCCCEEEEECCcHHHHHHHHHHHHh-cC--CCCEEEECCch
Confidence 4678999999999 9 9999999988888887776432 23 48999999984
No 116
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=41.34 E-value=1.2e+02 Score=28.81 Aligned_cols=100 Identities=12% Similarity=0.129 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHH-cCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceeccc---CCccHHHHHHHHHHhCC
Q 009559 190 NDVIRHIVITLEI-YGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSR---GAPTVSEIVDSMEERGI 265 (532)
Q Consensus 190 NavIr~iv~~l~~-ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR---~~~~~~~ivd~L~~~gI 265 (532)
+...+.+++.+.+ .|+++|.-+.... .+. ........+.+...|+++..... +..+...+++.|++.+.
T Consensus 122 ~~~~~~~~~~l~~~~g~~~i~~i~~~~------~~~-~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~ 194 (346)
T 1usg_A 122 SSQGPTAAKYILETVKPQRIAIIHDKQ------QYG-EGLARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKKENI 194 (346)
T ss_dssp GGHHHHHHHHHHHTTCCSSEEEEECSS------HHH-HHHHHHHHHHHHHTTCCEEEEEECCTTCCCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCC------chH-HHHHHHHHHHHHHcCCEEEEEeccCCCCcCHHHHHHHHHhcCC
Confidence 3445667777644 5877664433210 000 00111122334455666654322 23456678888888899
Q ss_pred cEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 266 NMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 266 d~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
+++|+.+.+.. |..+.+.+++.|+++++++.
T Consensus 195 d~i~~~~~~~~---a~~~~~~~~~~g~~~~~~~~ 225 (346)
T 1usg_A 195 DFVYYGGYYPE---MGQMLRQARSVGLKTQFMGP 225 (346)
T ss_dssp CEEEEESCHHH---HHHHHHHHHHTTCCCEEEEC
T ss_pred CEEEEcCcchH---HHHHHHHHHHcCCCCeEEec
Confidence 99998874432 33455667778888887764
No 117
>3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis}
Probab=40.51 E-value=27 Score=33.51 Aligned_cols=92 Identities=16% Similarity=0.260 Sum_probs=59.0
Q ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCce------eec-CCHHHHhhhhhcCCcceecccC
Q 009559 177 AAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELT------EMP-LSRKVVQNIHLSGGSLLGVSRG 249 (532)
Q Consensus 177 iaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~------~i~-Lt~~~V~~i~~~GGSiLGTSR~ 249 (532)
-+++.+||+.|-.... .+..+. -++|+-.|..=|++.++. +.. ++++..+.+...|=.++--...
T Consensus 3 ~~~I~~gG~~~~~~~~------~~~~~~--~~I~aDgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~~~~~~~e 74 (222)
T 3mel_A 3 RVLLVAGGNPSDWPTI------EPATYD--YFVGIDRGCLHLLEADLPLQLAVGDFDSLSREEYHFVQETTETLIQAPAE 74 (222)
T ss_dssp EEEEECSSCGGGCCCC------CGGGCS--CEEEETTHHHHHHTTTCCCCEEEECCTTSCTTHHHHHHHHCSSEEECCSS
T ss_pred EEEEEECCCCccchhH------HhhcCC--EEEEEcHHHHHHHHCCCCCCEEEeCcccCCHHHHHHHHhcCCcEEECCcc
Confidence 3566678887743210 112233 488999999887765431 122 6777777777665434432222
Q ss_pred --CccHHHHHHHHHHhCCc-EEEEeCChhh
Q 009559 250 --APTVSEIVDSMEERGIN-MLFVLGGNGT 276 (532)
Q Consensus 250 --~~~~~~ivd~L~~~gId-~L~vIGGdGT 276 (532)
.-|.+++++.+.+++-+ -++++||-|.
T Consensus 75 KD~TD~e~Al~~~~~~~~~~~I~i~Ga~Gg 104 (222)
T 3mel_A 75 KDDTDTQLALQEALQRFPQAEMTIIGATGG 104 (222)
T ss_dssp CSSCHHHHHHHHHHHHCTTSEEEEECCCSS
T ss_pred CCCCHHHHHHHHHHHhCCCceEEEEccCCC
Confidence 23678999999999997 9999999885
No 118
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=40.45 E-value=1.2e+02 Score=28.67 Aligned_cols=54 Identities=9% Similarity=0.062 Sum_probs=40.7
Q ss_pred cCCccHHHHHHHHHHhCCcEEEEeCChh---------hHHHHHHHHHHHHhcCCCceEeeeec
Q 009559 248 RGAPTVSEIVDSMEERGINMLFVLGGNG---------THAGANAIHNECRKRRMKVAVVGVPK 301 (532)
Q Consensus 248 R~~~~~~~ivd~L~~~gId~L~vIGGdG---------T~~gA~~L~ee~~kr~~~I~VIGIPK 301 (532)
|...+.++.++.+++.|++++=+...+. +-..+.++.+.+++.|+.+..++.|.
T Consensus 27 ~~~~~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~ 89 (295)
T 3cqj_A 27 PAGECWLERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLALVNAIVETGVRVPSMCLSA 89 (295)
T ss_dssp CCCSCHHHHHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHHHHHHHHHHHHHCCEEEEEEEGG
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEecCCcccccCcccCCHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 3345789999999999999998776543 23456678888888898887777664
No 119
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=40.10 E-value=1.3e+02 Score=30.70 Aligned_cols=133 Identities=14% Similarity=0.109 Sum_probs=73.2
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEE--cccccccccCCceeecCC--HHHHhhhhhcCCcceecccC
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGI--PFGYRGFCDKELTEMPLS--RKVVQNIHLSGGSLLGVSRG 249 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi--~~Gy~GL~~~~~~~i~Lt--~~~V~~i~~~GGSiLGTSR~ 249 (532)
..||++. |-+++ |. .+.+.++.+|. .|.+- ..|++.+... ..+ .-+ ....+.+.+. ..+++.
T Consensus 229 ~~RI~~~--G~~~~--~~---~l~~~le~~Ga-~VV~~~~~~g~r~~~~~-v~~-~~dpl~~lA~~yl~~----~~c~~~ 294 (385)
T 3o3m_B 229 GKKVLLT--GILAD--SK---DILDILEDNNI-SVVADDLAQETRQFRTD-VPA-GDDALERLARQWSNI----EGCSLA 294 (385)
T ss_dssp SEEEEEE--ESCCC--CH---HHHHHHHHTTE-EEEEEEETTTGGGTSSC-CCC-CSCHHHHHHHHHHHC----CSCTTS
T ss_pred CceEEEE--CCCCC--cH---HHHHHHHHCCC-EEEEECccccccccccC-CCC-CccHHHHHHHHHhcC----CCCccc
Confidence 4566664 54544 43 56667778897 57773 4565555321 100 001 1233334332 223331
Q ss_pred ----CccHHHHHHHHHHhCCcEEEEeCC--hhhHHHHH-HHHHHHHhcCCCceEeeeecccccCCCCCCccC-ChhhHHH
Q 009559 250 ----APTVSEIVDSMEERGINMLFVLGG--NGTHAGAN-AIHNECRKRRMKVAVVGVPKTIDNDILLMDKTF-GFDTAVE 321 (532)
Q Consensus 250 ----~~~~~~ivd~L~~~gId~L~vIGG--dGT~~gA~-~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~Sf-GFdTAv~ 321 (532)
....+.+++.++++++|+++...= =+...... .|.+.+++ .+|+++.| +-|.. +.+. ++.|-++
T Consensus 295 ~~p~~~R~~~i~~~~~~~~~DGvI~~~~~~C~~~~~~~~~~~~~~~~--~giP~l~i----e~D~~--~~~~~q~~TRie 366 (385)
T 3o3m_B 295 YDPKKKRGSLIVDEVKKKDIDGVIFCMMKFCDPEEYDYPLVRKDIED--SGIPTLYV----EIDQQ--TQNNEQARTRIQ 366 (385)
T ss_dssp CCTTCTHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHHHHT--TTCCEEEE----EECTT--CSCCHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCccHhhHHHHHHHHHH--CCCCEEEE----EecCC--CCChHHHHHHHH
Confidence 234678889999999999998863 33433333 34344443 45777754 44433 3344 6777777
Q ss_pred HHHHHHH
Q 009559 322 EAQRAIN 328 (532)
Q Consensus 322 ~a~~aI~ 328 (532)
...+.++
T Consensus 367 AF~Eml~ 373 (385)
T 3o3m_B 367 TFAEMMS 373 (385)
T ss_dssp HHHHHTC
T ss_pred HHHHHHH
Confidence 7777664
No 120
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=39.68 E-value=19 Score=36.28 Aligned_cols=49 Identities=18% Similarity=0.252 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCC
Q 009559 253 VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDI 307 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI 307 (532)
++++ +.+++.+.|.++-|||--.++.|..++ +. + .+++|.||-|.-.|-
T Consensus 78 v~~~-~~~~~~~~d~IIavGGGsv~D~aK~vA-~~--~--~~p~i~IPTT~~tgs 126 (354)
T 3ce9_A 78 IGTN-AFKIPAEVDALIGIGGGKAIDAVKYMA-FL--R--KLPFISVPTSTSNDG 126 (354)
T ss_dssp HHHH-HTTSCTTCCEEEEEESHHHHHHHHHHH-HH--H--TCCEEEEESCCSSGG
T ss_pred HHHH-HHhhhcCCCEEEEECChHHHHHHHHHH-hh--c--CCCEEEecCcccCCC
Confidence 4455 566667899999999999999988887 33 2 578999999987654
No 121
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=39.57 E-value=1.5e+02 Score=27.46 Aligned_cols=128 Identities=9% Similarity=0.079 Sum_probs=69.9
Q ss_pred CCcEEEEEeCCCC--cchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC
Q 009559 173 EEVKAAIVTCGGL--CPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA 250 (532)
Q Consensus 173 ~~~kiaIvt~GG~--cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~ 250 (532)
+..+||++...-. -|-...++.++...+..+|++ +.-+ ..+ +...
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~-~~~~---------------~~~-----------------~~~~ 50 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIK-LEFM---------------APE-----------------KEED 50 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCE-EEEC---------------CCS-----------------STTC
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCE-EEEe---------------cCC-----------------CCCC
Confidence 3457999987665 788888999998888888873 3210 000 0011
Q ss_pred -ccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCC--CccCChhh--HHHHHHH
Q 009559 251 -PTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLM--DKTFGFDT--AVEEAQR 325 (532)
Q Consensus 251 -~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~t--D~SfGFdT--Av~~a~~ 325 (532)
....+.++.|...++|++++.+.+.+.. ....+.+.+ .+++||.+ |.+.+.. ..++++|- +...+++
T Consensus 51 ~~~~~~~~~~l~~~~vdgii~~~~~~~~~--~~~~~~~~~--~~iPvV~~----~~~~~~~~~~~~V~~D~~~~g~~~~~ 122 (289)
T 3brs_A 51 YLVQNELIEEAIKRKPDVILLAAADYEKT--YDAAKEIKD--AGIKLIVI----DSGMKQDIADITVATDNIQAGIRIGA 122 (289)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECCSCTTTT--HHHHTTTGG--GTCEEEEE----SSCCSSCCCSEEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCChHHh--HHHHHHHHH--CCCcEEEE----CCCCCCCcceEEEeeChHHHHHHHHH
Confidence 1223567788889999999998775421 111222322 24777765 3333321 23455543 3333333
Q ss_pred HHHHHHHhhhhccccEEEEE
Q 009559 326 AINSAYIEAHSAYHGIGIVK 345 (532)
Q Consensus 326 aI~~a~~eA~S~~~~V~vVe 345 (532)
.+.. ....+++|+++-
T Consensus 123 ~L~~----~~G~~~~i~~i~ 138 (289)
T 3brs_A 123 VTKN----LVRKSGKIGVIS 138 (289)
T ss_dssp HHHH----HTSSSCEEEEEE
T ss_pred HHHH----HcCCCceEEEEE
Confidence 3322 111246787774
No 122
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=39.54 E-value=24 Score=36.11 Aligned_cols=123 Identities=15% Similarity=0.212 Sum_probs=55.6
Q ss_pred cccccCCCC---cEEEEEeCCCCcchHHHHHHHHHHHHHHc--CCceEEEEccccc-ccccCCceeecCCHHHHhhhhhc
Q 009559 166 EEIYFKPEE---VKAAIVTCGGLCPGLNDVIRHIVITLEIY--GVKNIVGIPFGYR-GFCDKELTEMPLSRKVVQNIHLS 239 (532)
Q Consensus 166 ~~i~f~p~~---~kiaIvt~GG~cPGlNavIr~iv~~l~~y--gv~~V~Gi~~Gy~-GL~~~~~~~i~Lt~~~V~~i~~~ 239 (532)
++++|+... +||+||+ |-.|+.=-. ..+++.+.+. ++ ++.-+.-|-. -..+.-+..+.++++.--.+...
T Consensus 16 ~~~~~~~~~m~~~kI~~v~--Gtr~~~~~~-a~li~~l~~~~~~~-~~~~~~tG~h~~m~~~~~~~~~i~~~~~l~v~~~ 91 (403)
T 3ot5_A 16 ENLYFQSNAMAKIKVMSIF--GTRPEAIKM-APLVLALEKEPETF-ESTVVITAQHREMLDQVLEIFDIKPDIDLDIMKK 91 (403)
T ss_dssp ----------CCEEEEEEE--CSHHHHHHH-HHHHHHHHTCTTTE-EEEEEECC-----CHHHHHHTTCCCSEECCCCC-
T ss_pred chhhhhhhccccceEEEEE--ecChhHHHH-HHHHHHHHhCCCCC-cEEEEEecCcHHHHHHHHHhcCCCCCcccccCCC
Confidence 346776653 4788877 777876554 6677777655 45 3443333311 01110011111111100001011
Q ss_pred CCcceecccCCccHHHHHHHHHHhCCcEEEEeCChh-hHHHHHHHHHHHHhcCCCceEeeee
Q 009559 240 GGSLLGVSRGAPTVSEIVDSMEERGINMLFVLGGNG-THAGANAIHNECRKRRMKVAVVGVP 300 (532)
Q Consensus 240 GGSiLGTSR~~~~~~~ivd~L~~~gId~L~vIGGdG-T~~gA~~L~ee~~kr~~~I~VIGIP 300 (532)
+.+.... ...-..++.+.|++.+-|.++++|+-. ++.++. .+ ++ .+|+|+++-
T Consensus 92 ~~~~~~~--~~~~~~~l~~~l~~~kPD~Vi~~gd~~~~l~~~l-aA---~~--~~IPv~h~~ 145 (403)
T 3ot5_A 92 GQTLAEI--TSRVMNGINEVIAAENPDIVLVHGDTTTSFAAGL-AT---FY--QQKMLGHVE 145 (403)
T ss_dssp CCCHHHH--HHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHH-HH---HH--TTCEEEEES
T ss_pred CCCHHHH--HHHHHHHHHHHHHHcCCCEEEEECCchhHHHHHH-HH---HH--hCCCEEEEE
Confidence 1222110 111356778899999999999999844 444442 22 22 457787764
No 123
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=39.35 E-value=73 Score=31.15 Aligned_cols=100 Identities=13% Similarity=0.211 Sum_probs=59.7
Q ss_pred cchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceeccc---CCccHHHHHHHHHH
Q 009559 186 CPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSR---GAPTVSEIVDSMEE 262 (532)
Q Consensus 186 cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR---~~~~~~~ivd~L~~ 262 (532)
+|.-....+.+++.+.+.|+++|.-+... ..+ -..+.....+.+...|+.+.+... +..+....+..+++
T Consensus 123 ~~~~~~~~~~~~~~l~~~g~~~vaii~~~------~~~-g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~l~~i~~ 195 (379)
T 3n0w_A 123 LYNFTSIVKTVVQAQLAKGYKTWFLMLPD------AAY-GDLMNAAIRRELTAGGGQIVGSVRFPFETQDFSSYLLQAKA 195 (379)
T ss_dssp SCCHHHHHHHHHHHHHHTTCCEEEEEEES------SHH-HHHHHHHHHHHHHHHTCEEEEEEEECTTCCCCHHHHHHHHH
T ss_pred eCChHHHHHHHHHHHHHcCCcEEEEEecc------cch-hHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 34444456677777777788877555211 111 001122233445566888776543 34577888899999
Q ss_pred hCCcEEEEeCChhhHHHHHHHHHHHHhcCCCce
Q 009559 263 RGINMLFVLGGNGTHAGANAIHNECRKRRMKVA 295 (532)
Q Consensus 263 ~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~ 295 (532)
.+.+++|+.+- +. .+..+.+.+++.|++.+
T Consensus 196 ~~~d~v~~~~~-~~--~~~~~~~~~~~~g~~~~ 225 (379)
T 3n0w_A 196 SGAQLIVSTSG-GA--ANINIMKQAREFGLPSK 225 (379)
T ss_dssp HTCSEEEECCC-HH--HHHHHHHHHHHTTCSCS
T ss_pred CCCCEEEEecc-cc--hHHHHHHHHHHcCCCCC
Confidence 99999987654 32 22345566777887765
No 124
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=38.55 E-value=78 Score=31.50 Aligned_cols=66 Identities=6% Similarity=-0.102 Sum_probs=45.3
Q ss_pred HHhhhhhcCCcceecccC---CccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 232 VVQNIHLSGGSLLGVSRG---APTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 232 ~V~~i~~~GGSiLGTSR~---~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
..+.+...|+++....+. ..+...++..|++.+.|.+|+.|-.+. .+..+.+.+++.+++..+++.
T Consensus 184 ~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~ 252 (419)
T 3h5l_A 184 IRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRADPPAVIVVTHFYPQ--DQALFMNQFMTDPTNSLVYLQ 252 (419)
T ss_dssp HHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHHSCCSEEEECCCCHH--HHHHHHHHHTTSCCSCEEEEC
T ss_pred HHHHHHHcCCeEEEEecCCCCCccHHHHHHHHHhcCCCEEEEccccCc--hHHHHHHHHHHcCCCceEEec
Confidence 344566678888776553 357888999999999999888764332 234455667777776666653
No 125
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=38.15 E-value=98 Score=30.92 Aligned_cols=99 Identities=10% Similarity=0.008 Sum_probs=63.6
Q ss_pred cchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHHHHHHHHHhCC
Q 009559 186 CPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEIVDSMEERGI 265 (532)
Q Consensus 186 cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ivd~L~~~gI 265 (532)
+|.-......++..+.++|+++|.-+..-.. + -..+-....+.+...|+++..+.....+...++..|++.+-
T Consensus 135 ~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~------~-g~~~~~~~~~~~~~~g~~v~~~~~~~~d~~~~l~~i~~~~~ 207 (433)
T 4f11_A 135 VPSDNAVNPAILKLLKHYQWKRVGTLTQDVQ------R-FSEVRNDLTGVLYGEDIEISDTESFSNDPCTSVKKLKGNDV 207 (433)
T ss_dssp SCCGGGHHHHHHHHHHHTTCCEEEEEEESSH------H-HHHHHHHHHHHSSSSSCEEEEEEEESSCCHHHHHHHHHTTC
T ss_pred cCchHHHHHHHHHHHHHcCCcEEEEEEecch------h-hHHHHHHHHHHHHHcCceEEEEeccCcCHHHHHHHHhhCCC
Confidence 3444445666777777889987755432111 0 00112223344566788888776666688889999999999
Q ss_pred cEEEEeCChhhHHHHHHHHHHHHhcCCCc
Q 009559 266 NMLFVLGGNGTHAGANAIHNECRKRRMKV 294 (532)
Q Consensus 266 d~L~vIGGdGT~~gA~~L~ee~~kr~~~I 294 (532)
+.+|+.+-.. .+..+.+.+++.|+.-
T Consensus 208 ~vii~~~~~~---~~~~~~~~a~~~g~~~ 233 (433)
T 4f11_A 208 RIILGQFDQN---MAAKVFCCAYEENMYG 233 (433)
T ss_dssp CEEEEECCHH---HHHHHHHHHHHTTCCS
T ss_pred eEEEEeCcHH---HHHHHHHHHHHcCCCC
Confidence 9999887543 4455667777777754
No 126
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=38.06 E-value=42 Score=34.64 Aligned_cols=49 Identities=29% Similarity=0.385 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHhCC---cEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeeccc
Q 009559 252 TVSEIVDSMEERGI---NMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTI 303 (532)
Q Consensus 252 ~~~~ivd~L~~~gI---d~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTI 303 (532)
..+++++.+.+.++ |.++-+||--.+..|..++... .| ++++|.||-|.
T Consensus 88 ~v~~~~~~l~~~~~~r~d~IIavGGGsv~D~ak~~Aa~~-~r--gip~i~IPTTl 139 (368)
T 3qbe_A 88 VVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFAAATW-LR--GVSIVHLPTTL 139 (368)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHG-GG--CCEEEEEECSH
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHh-cc--CCcEEEECCCC
Confidence 45788899998886 9999999999998888777432 23 48999999996
No 127
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=38.00 E-value=2.7e+02 Score=26.47 Aligned_cols=86 Identities=15% Similarity=0.242 Sum_probs=50.7
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHc-CCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC-c
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIY-GVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA-P 251 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~y-gv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~-~ 251 (532)
..+||+++.. .-|=...++.++...+..+ |+. +.-. .+... .
T Consensus 6 ~~~Igvi~~~-~~~~~~~~~~gi~~~a~~~~g~~-l~i~----------------------------------~~~~~~~ 49 (325)
T 2x7x_A 6 HFRIGVAQCS-DDSWRHKMNDEILREAMFYNGVS-VEIR----------------------------------SAGDDNS 49 (325)
T ss_dssp CCEEEEEESC-CSHHHHHHHHHHHHHHTTSSSCE-EEEE----------------------------------ECTTCHH
T ss_pred CeEEEEEecC-CCHHHHHHHHHHHHHHHHcCCcE-EEEe----------------------------------CCCCCHH
Confidence 4578999876 5666667777777776665 652 3110 00101 1
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
...+.++.|...++|++++.+.+.+.. ....+.+.+. +++||.+
T Consensus 50 ~~~~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~--~iPvV~~ 93 (325)
T 2x7x_A 50 KQAEDVHYFMDEGVDLLIISANEAAPM--TPIVEEAYQK--GIPVILV 93 (325)
T ss_dssp HHHHHHHHHHHTTCSEEEECCSSHHHH--HHHHHHHHHT--TCCEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCHHHH--HHHHHHHHHC--CCeEEEe
Confidence 223567778889999999998765421 1222344443 4677765
No 128
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=37.97 E-value=18 Score=36.49 Aligned_cols=84 Identities=13% Similarity=0.145 Sum_probs=51.8
Q ss_pred EEEEEeCCCCcchHH-HHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHH
Q 009559 176 KAAIVTCGGLCPGLN-DVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVS 254 (532)
Q Consensus 176 kiaIvt~GG~cPGlN-avIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~ 254 (532)
+||||...+.++... ..+...++.|+..|.+ |.--. ...+......|| .....+
T Consensus 14 ~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~-v~~~~------------------~~~~~~~~~agt------d~~Ra~ 68 (327)
T 4h1h_A 14 EIRIIAPSRSIGIMADNQVEIAVNRLTDMGFK-VTFGE------------------HVAEMDCMMSSS------IRSRVA 68 (327)
T ss_dssp EEEEECSSSCGGGSCHHHHHHHHHHHHHTTCE-EEECT------------------TTTCCCTTSSCC------HHHHHH
T ss_pred EEEEEeCCCCcCccCHHHHHHHHHHHHhCCCE-EEECc------------------chhhccCcccCC------HHHHHH
Confidence 799998776665543 4566677778889984 42101 011111111121 112356
Q ss_pred HHHHHHHHhCCcEEEE-eCChhhHHHHHHHH
Q 009559 255 EIVDSMEERGINMLFV-LGGNGTHAGANAIH 284 (532)
Q Consensus 255 ~ivd~L~~~gId~L~v-IGGdGT~~gA~~L~ 284 (532)
++.+.+..-.|+++++ +||+|+.+-.-.|-
T Consensus 69 dL~~a~~Dp~i~aI~~~rGG~g~~rlL~~LD 99 (327)
T 4h1h_A 69 DIHEAFNDSSVKAILTVIGGFNSNQLLPYLD 99 (327)
T ss_dssp HHHHHHHCTTEEEEEESCCCSCGGGGGGGCC
T ss_pred HHHHHhhCCCCCEEEEcCCchhHHHHhhhcc
Confidence 7788888899999986 59999998765553
No 129
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Probab=37.91 E-value=18 Score=32.49 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=38.3
Q ss_pred ccHHHHHHHHHHhCCcEEEEeCChhhHHHHHH--HHHHHHhcCCCceEeeeeccccc
Q 009559 251 PTVSEIVDSMEERGINMLFVLGGNGTHAGANA--IHNECRKRRMKVAVVGVPKTIDN 305 (532)
Q Consensus 251 ~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~--L~ee~~kr~~~I~VIGIPKTIDN 305 (532)
.+.+++++.|++.+++-++|+||-..++.+.. +.+ .+.+.-+|+.+-+
T Consensus 80 ~~l~~~l~~l~~~~~~~i~v~GG~~l~~~~l~~~lvD-------el~l~~~p~~lG~ 129 (168)
T 1cz3_A 80 GSPADVVKFLEGKGYERVAVIGGKTVFTEFLREKLVD-------ELFVTVEPYVFGK 129 (168)
T ss_dssp SCHHHHHHHHHHTTCSEEEEEECHHHHHHHHHTTCCS-------EEEEEECSEEESS
T ss_pred CCHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCCC-------EEEEEEeceecCC
Confidence 37889999999999999999999887766554 332 4778888988854
No 130
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=37.58 E-value=13 Score=35.77 Aligned_cols=70 Identities=13% Similarity=0.190 Sum_probs=49.9
Q ss_pred eEEEEcccccccccCCce------ee-cCCHHHHhhhhhcCCcceecccCC--ccHHHHHHHHHHhCCcEEEEeCChhh
Q 009559 207 NIVGIPFGYRGFCDKELT------EM-PLSRKVVQNIHLSGGSLLGVSRGA--PTVSEIVDSMEERGINMLFVLGGNGT 276 (532)
Q Consensus 207 ~V~Gi~~Gy~GL~~~~~~------~i-~Lt~~~V~~i~~~GGSiLGTSR~~--~~~~~ivd~L~~~gId~L~vIGGdGT 276 (532)
-++|+-.|..=|++.++. ++ .++++..+.+...|-.++-....+ -|.+++++.+.+++.+-++++|+-|.
T Consensus 27 ~~i~~DgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~i~~~p~eKD~TD~e~Al~~a~~~g~~~I~i~Ga~Gg 105 (222)
T 3lm8_A 27 LWIGVDKGTVTLLDAGIIPVEAFGDFDSITEQERRRIEKAAPALHVYQAEKDQTDLDLALDWALEKQPDIIQIFGITGG 105 (222)
T ss_dssp EEEEETHHHHHHHHHTCCCSEEESCSTTSCHHHHHHHHHHCTTCEEECCCSSSCHHHHHHHHHHHHCCSEEEEESCCCS
T ss_pred EEEEECHHHHHHHHcCCCCcEEEeCcccCCHHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence 477888888766653221 11 267888877777665566554432 37899999999999999999999885
No 131
>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans}
Probab=37.39 E-value=74 Score=30.27 Aligned_cols=95 Identities=16% Similarity=0.182 Sum_probs=60.5
Q ss_pred EEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCce------eec-CCHHHHhhhhhcCCcceecccCC
Q 009559 178 AIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELT------EMP-LSRKVVQNIHLSGGSLLGVSRGA 250 (532)
Q Consensus 178 aIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~------~i~-Lt~~~V~~i~~~GGSiLGTSR~~ 250 (532)
+++.+||+.|-.- .. ..-++|+-.|..=|++.++. ++. ++++..+.+...|=.++--...+
T Consensus 4 ~~I~~gG~~~~~~----------~~--~~~~i~~DgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~i~~~~~eK 71 (218)
T 3ihk_A 4 VALFSGGDLTYFT----------RD--FDYFVGIDKGSSFLLKNQLPLDLAIGDFDSVSAEEFKQIKAKAKKLVMAPAEK 71 (218)
T ss_dssp EEEECSSCCSCCC----------CC--CSEEEEETHHHHHHHHTTCCCSEEEECCTTSCHHHHHHHHTTCSSEEECCSSC
T ss_pred EEEEECCCCccCc----------cc--CCEEEEEcHHHHHHHHcCCCCCEEEeCcccCCHHHHHHHHhcCCeEEECCCCC
Confidence 5666688766321 01 23578888888777764431 122 67787777776654454323333
Q ss_pred --ccHHHHHHHHHHh-CCcEEEEeCChhhHHHHHHHHH
Q 009559 251 --PTVSEIVDSMEER-GINMLFVLGGNGTHAGANAIHN 285 (532)
Q Consensus 251 --~~~~~ivd~L~~~-gId~L~vIGGdGT~~gA~~L~e 285 (532)
-|.+++++.+.++ +.+-++++|+-|. |-=+.|+.
T Consensus 72 D~TD~e~Al~~a~~~~~~~~I~i~Ga~GG-R~DH~lan 108 (218)
T 3ihk_A 72 NDTDTELALKTIFDCFGRVEIIVFGAFGG-RIDHMLSN 108 (218)
T ss_dssp SSCHHHHHHHHHHHHTSSCEEEEESCSSS-CHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCEEEEECCCCC-chhhHHHH
Confidence 3788999888877 8999999999886 44344543
No 132
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=36.87 E-value=16 Score=32.75 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCC
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILL 309 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~ 309 (532)
+.+++++.|++.+.+-++||||-...+.+..+.+ .+.+--||..++-|..+
T Consensus 81 ~~~~~l~~l~~~~~~~i~viGG~~l~~~~l~lvD-------el~lt~ip~~~~G~~~F 131 (162)
T 1vdr_A 81 SVEEAVDIAASLDAETAYVIGGAAIYALFQPHLD-------RMVLSRVPGEYEGDTYY 131 (162)
T ss_dssp SHHHHHHHHHHTTCSCEEEEECHHHHHHHGGGCS-------EEEEEEEEEECCCSEEC
T ss_pred CHHHHHHHHHhCCCCcEEEECCHHHHHHHHHhCC-------EEEEEEEccccccCEEC
Confidence 6889999999888999999999888887776443 47788889998777644
No 133
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=36.25 E-value=2.9e+02 Score=26.29 Aligned_cols=91 Identities=13% Similarity=0.059 Sum_probs=56.7
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC-cc
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA-PT 252 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~-~~ 252 (532)
..+||+++..-.-|-...++.++...+..+|+. +.-+ .+... ..
T Consensus 5 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~-l~~~----------------------------------~~~~~~~~ 49 (332)
T 2rjo_A 5 QTTLACSFRSLTNPYYTAFNKGAQSFAKSVGLP-YVPL----------------------------------TTEGSSEK 49 (332)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHHTCC-EEEE----------------------------------ECTTCHHH
T ss_pred ccEEEEEecCCCcHHHHHHHHHHHHHHHHcCCE-EEEe----------------------------------cCCCCHHH
Confidence 457999998777788888999999888888873 3210 00000 11
Q ss_pred HHHHHHHHHHhC--CcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeeccc
Q 009559 253 VSEIVDSMEERG--INMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTI 303 (532)
Q Consensus 253 ~~~ivd~L~~~g--Id~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTI 303 (532)
..+.++.|...+ +|++++.+.+... ...+.+.+.+. +|+||.+-..+
T Consensus 50 ~~~~i~~l~~~~~~vdgiIi~~~~~~~--~~~~~~~~~~~--~iPvV~~~~~~ 98 (332)
T 2rjo_A 50 GIADIRALLQKTGGNLVLNVDPNDSAD--ARVIVEACSKA--GAYVTTIWNKP 98 (332)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCSSHHH--HHHHHHHHHHH--TCEEEEESCCC
T ss_pred HHHHHHHHHHCCCCCCEEEEeCCCHHH--HHHHHHHHHHC--CCeEEEECCCC
Confidence 235677777788 9999999877542 11222333333 47777664333
No 134
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=35.20 E-value=1.5e+02 Score=28.86 Aligned_cols=104 Identities=11% Similarity=0.036 Sum_probs=59.3
Q ss_pred cchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhc--CCcceeccc---CCccHHHHHHHH
Q 009559 186 CPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLS--GGSLLGVSR---GAPTVSEIVDSM 260 (532)
Q Consensus 186 cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~--GGSiLGTSR---~~~~~~~ivd~L 260 (532)
+|--....+.++..+..+|+++|.-+...+. + -..+.....+.+... |+++..... +..+....++.+
T Consensus 123 ~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~------~-g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~~~d~~~~~~~i 195 (387)
T 3i45_A 123 RPSTYMQAAMLAAEAAKLPITRWATIAPNYE------Y-GQSAVARFKELLLAARPEVTFVAEQWPALYKLDAGPTVQAL 195 (387)
T ss_dssp SCCHHHHHHHHHHHHTTSSCCEEEEECCSSH------H-HHHHHHHHHHHHHHHCTTCEEEEEECCCTTCCCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHcCCCeEEEEeCCch------H-hHHHHHHHHHHHHHhCCCcEEEeeecCCCCCcCHHHHHHHH
Confidence 3444556677777777778877755542111 0 000111122233344 556555433 334788889999
Q ss_pred HHhCCcEEEEeCChhhHHHHHHHHHHHHhcCC--CceEeee
Q 009559 261 EERGINMLFVLGGNGTHAGANAIHNECRKRRM--KVAVVGV 299 (532)
Q Consensus 261 ~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~--~I~VIGI 299 (532)
++.+.+++|+.+-+.. +..+.+.+++.|+ ++.+++.
T Consensus 196 ~~~~~d~v~~~~~~~~---~~~~~~~~~~~g~~~~~~i~~~ 233 (387)
T 3i45_A 196 QQAEPEGLFNVLFGAD---LPKFVREGRVRGLFAGRQVVSM 233 (387)
T ss_dssp HHTCCSEEEECCCTTH---HHHHHHHHHHHTSSTTCEEEEE
T ss_pred HhCCCCEEEEcCccHH---HHHHHHHHHHcCCCCCCeEEee
Confidence 9999999888765543 3334455666676 4666654
No 135
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=33.95 E-value=40 Score=30.32 Aligned_cols=48 Identities=25% Similarity=0.471 Sum_probs=34.5
Q ss_pred cHHHHHHHHH-HhCCcEEEEeCChhhHHHHHHHHHHHHhc-CCCceEeeeecc
Q 009559 252 TVSEIVDSME-ERGINMLFVLGGNGTHAGANAIHNECRKR-RMKVAVVGVPKT 302 (532)
Q Consensus 252 ~~~~ivd~L~-~~gId~L~vIGGdGT~~gA~~L~ee~~kr-~~~I~VIGIPKT 302 (532)
|..-++|.++ ...+|.++++-||+-+.-+. +.++++ |.++-|+|.|++
T Consensus 95 Dv~laiD~~~~a~~~d~~vLvSgD~DF~plv---~~lr~~~G~~V~v~g~~~~ 144 (165)
T 2qip_A 95 DVGITLDAIEIAPDVDRVILVSGDGDFSLLV---ERIQQRYNKKVTVYGVPRL 144 (165)
T ss_dssp HHHHHHHHHHHGGGCSEEEEECCCGGGHHHH---HHHHHHHCCEEEEEECGGG
T ss_pred cHHHHHHHHHhhccCCEEEEEECChhHHHHH---HHHHHHcCcEEEEEeCCCc
Confidence 5554555542 25799999999999886543 556665 888888888764
No 136
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=33.85 E-value=46 Score=31.06 Aligned_cols=86 Identities=21% Similarity=0.314 Sum_probs=54.3
Q ss_pred CcEEEEEeCC-CCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCcc
Q 009559 174 EVKAAIVTCG-GLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPT 252 (532)
Q Consensus 174 ~~kiaIvt~G-G~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~ 252 (532)
+.+++|++.| -|-|-+- .+...|..+|+. | + +. +.+--|....
T Consensus 6 ~~~V~IimgS~SD~~v~~----~a~~~l~~~gi~--~------------e---v~---------------V~SaHR~p~~ 49 (169)
T 3trh_A 6 KIFVAILMGSDSDLSTME----TAFTELKSLGIP--F------------E---AH---------------ILSAHRTPKE 49 (169)
T ss_dssp CCEEEEEESCGGGHHHHH----HHHHHHHHTTCC--E------------E---EE---------------ECCTTTSHHH
T ss_pred CCcEEEEECcHHhHHHHH----HHHHHHHHcCCC--E------------E---EE---------------EEcccCCHHH
Confidence 4578888755 3555544 566667778874 0 1 11 2223355666
Q ss_pred HHHHHHHHHHhCCcEEEEe-CChhhHHHHHHHHHHHHhcCCCceEeeeecc
Q 009559 253 VSEIVDSMEERGINMLFVL-GGNGTHAGANAIHNECRKRRMKVAVVGVPKT 302 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vI-GGdGT~~gA~~L~ee~~kr~~~I~VIGIPKT 302 (532)
..++++..++.+++.++.+ |+.+.+-+.. +- ....+|||||-.
T Consensus 50 ~~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~ 93 (169)
T 3trh_A 50 TVEFVENADNRGCAVFIAAAGLAAHLAGTI--AA-----HTLKPVIGVPMA 93 (169)
T ss_dssp HHHHHHHHHHTTEEEEEEEECSSCCHHHHH--HH-----TCSSCEEEEECC
T ss_pred HHHHHHHHHhCCCcEEEEECChhhhhHHHH--Hh-----cCCCCEEEeecC
Confidence 7888888999999977766 4455555543 21 246899999964
No 137
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=33.18 E-value=2.1e+02 Score=27.17 Aligned_cols=81 Identities=16% Similarity=0.112 Sum_probs=51.7
Q ss_pred CCcEEEEEeCC--------------CCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhh
Q 009559 173 EEVKAAIVTCG--------------GLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHL 238 (532)
Q Consensus 173 ~~~kiaIvt~G--------------G~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~ 238 (532)
+.|||++++.. ....|.-..+..+++.|.+.|+ +|.-+..............+.
T Consensus 2 ~~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~-~v~v~~~~~~~~~~~~~~~~~----------- 69 (342)
T 2iuy_A 2 RPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGH-EVFLLGAPGSPAGRPGLTVVP----------- 69 (342)
T ss_dssp -CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTC-EEEEESCTTSCCCSTTEEECS-----------
T ss_pred CccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCC-eEEEEecCCCCCCCCcceecc-----------
Confidence 35899999877 2236888899999999988888 466555443322211111100
Q ss_pred cCCcceecccCCccHHHHHHHHHHhCCcEEEEeCChhh
Q 009559 239 SGGSLLGVSRGAPTVSEIVDSMEERGINMLFVLGGNGT 276 (532)
Q Consensus 239 ~GGSiLGTSR~~~~~~~ivd~L~~~gId~L~vIGGdGT 276 (532)
. ....++.+.+++.+.|.+++-+....
T Consensus 70 ----------~-~~~~~l~~~l~~~~~Dvi~~~~~~~~ 96 (342)
T 2iuy_A 70 ----------A-GEPEEIERWLRTADVDVVHDHSGGVI 96 (342)
T ss_dssp ----------C-CSHHHHHHHHHHCCCSEEEECSSSSS
T ss_pred ----------C-CcHHHHHHHHHhcCCCEEEECCchhh
Confidence 0 11237778888899999988876543
No 138
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=32.78 E-value=2.6e+02 Score=26.28 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=42.9
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCC---ceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGV---KNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA 250 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv---~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~ 250 (532)
..+|||+. .-.-|-...+++++-..+..+|+ . +. +. +..+.+.
T Consensus 2 ~~~Igvi~-~~~~p~~~~i~~gi~~~l~~~gy~g~~-v~----------------l~----------------~~~~~~~ 47 (295)
T 3lft_A 2 NAKIGVLQ-FVSHPSLDLIYKGIQDGLAEEGYKDDQ-VK----------------ID----------------FMNSEGD 47 (295)
T ss_dssp CEEEEEEE-CSCCHHHHHHHHHHHHHHHHTTCCGGG-EE----------------EE----------------EEECTTC
T ss_pred ceEEEEEE-ccCChhHHHHHHHHHHHHHHcCCCCCc-eE----------------EE----------------EecCCCC
Confidence 45789883 44567788889998888887775 2 11 00 0111111
Q ss_pred -ccHHHHHHHHHHhCCcEEEEeCC
Q 009559 251 -PTVSEIVDSMEERGINMLFVLGG 273 (532)
Q Consensus 251 -~~~~~ivd~L~~~gId~L~vIGG 273 (532)
....++++.|.+.++|+++++|.
T Consensus 48 ~~~~~~~~~~l~~~~vDgII~~~~ 71 (295)
T 3lft_A 48 QSKVATMSKQLVANGNDLVVGIAT 71 (295)
T ss_dssp HHHHHHHHHHHTTSSCSEEEEESH
T ss_pred HHHHHHHHHHHHhcCCCEEEECCc
Confidence 22356788899999999999873
No 139
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=32.77 E-value=79 Score=31.25 Aligned_cols=101 Identities=18% Similarity=0.238 Sum_probs=55.6
Q ss_pred cccccCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCccee
Q 009559 166 EEIYFKPEEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLG 245 (532)
Q Consensus 166 ~~i~f~p~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLG 245 (532)
+.+||.+....|||.=||= |--+|.+.+.+.+ ...+++-+-+ ..-+... +-+++.+..
T Consensus 16 ~~~~~~~~~~~IgvfDSGv---GGLtv~~~i~~~l---P~e~~iy~~D--~a~~PYG----~ks~e~i~~---------- 73 (274)
T 3uhf_A 16 ENLYFQSNAMKIGVFDSGV---GGLSVLKSLYEAR---LFDEIIYYGD--TARVPYG----VKDKDTIIK---------- 73 (274)
T ss_dssp -CCCCCCSCCEEEEEESSS---TTHHHHHHHHHTT---CCSEEEEEEC--TTTCCCT----TSCHHHHHH----------
T ss_pred ceeeccCCCCeEEEEECCC---ChHHHHHHHHHHC---CCCCEEEEec--CCCCCCC----CCCHHHHHH----------
Confidence 5689999999999999982 3345666665543 3333432111 0001110 023333322
Q ss_pred cccCCccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 246 VSRGAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 246 TSR~~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
...++++.|++.|++++++-.---|..+...|.+. ++++||||
T Consensus 74 ------~~~~~~~~L~~~g~d~IVIACNTa~~~al~~lr~~-----~~iPvigi 116 (274)
T 3uhf_A 74 ------FCLEALDFFEQFQIDMLIIACNTASAYALDALRAK-----AHFPVYGV 116 (274)
T ss_dssp ------HHHHHHHHHTTSCCSEEEECCHHHHHHSHHHHHHH-----CSSCEECS
T ss_pred ------HHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHh-----cCCCEEcC
Confidence 13467889999999997775533222222334332 57899986
No 140
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=31.87 E-value=68 Score=29.59 Aligned_cols=85 Identities=21% Similarity=0.218 Sum_probs=51.7
Q ss_pred CccHHHHHHHHHHh-C----CcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCC--ccCChh-hHHH
Q 009559 250 APTVSEIVDSMEER-G----INMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMD--KTFGFD-TAVE 321 (532)
Q Consensus 250 ~~~~~~ivd~L~~~-g----Id~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD--~SfGFd-TAv~ 321 (532)
+.|+..|-+.|.++ . =|-++|=||-|-+..|.++-++ -|+.|+|+|+-|- ...+...+ ..+--+ -|+.
T Consensus 60 ~DDya~M~Evl~RR~~r~~~PDLilIDGGkgQl~aA~~vl~e---lg~~i~v~glAK~-~e~l~~~~~~i~L~~~s~~l~ 135 (159)
T 2nrr_A 60 PDDYESIRTVVKRRYSKHPLPNLLFVDGGIGQVNAAIEALKE---IGKDCPVVGLAKK-EETVVFENREIHLPHDHPVLR 135 (159)
T ss_dssp -CHHHHHHHHHHHHHTTSCCCSEEEESSCHHHHHHHHHHHHH---TTCCCCEEEEC-----CEEETTEEECCCTTCHHHH
T ss_pred CCHHHHHHHHHHHHhccCCCCCEEEEeCCHHHHHHHHHHHHH---cCCCccEEEEEcC-CcEEEeCCCeeecCCCCHHHH
Confidence 46788888888776 2 4778888999999988877654 4678999999993 11222111 122222 2556
Q ss_pred HHHHHHHHHHHhhhhcc
Q 009559 322 EAQRAINSAYIEAHSAY 338 (532)
Q Consensus 322 ~a~~aI~~a~~eA~S~~ 338 (532)
..++.=+.+|.=|.+.|
T Consensus 136 llqriRDEaHRFAIt~H 152 (159)
T 2nrr_A 136 LLVQIRDETHRFAVSYH 152 (159)
T ss_dssp HHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666566666565543
No 141
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=31.75 E-value=38 Score=31.77 Aligned_cols=87 Identities=22% Similarity=0.344 Sum_probs=57.9
Q ss_pred CCcEEEEEeCC-CCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc
Q 009559 173 EEVKAAIVTCG-GLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP 251 (532)
Q Consensus 173 ~~~kiaIvt~G-G~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~ 251 (532)
+.-+++|++.| -|-|-+ ..+...|...|+. | + + .+.+--|...
T Consensus 11 ~~P~V~IimGS~SD~~v~----~~a~~~l~~~gi~--~------------e---v---------------~V~saHR~p~ 54 (173)
T 4grd_A 11 SAPLVGVLMGSSSDWDVM----KHAVAILQEFGVP--Y------------E---A---------------KVVSAHRMPD 54 (173)
T ss_dssp SSCSEEEEESSGGGHHHH----HHHHHHHHHTTCC--E------------E---E---------------EECCTTTSHH
T ss_pred CCCeEEEEeCcHhHHHHH----HHHHHHHHHcCCC--E------------E---E---------------EEEccccCHH
Confidence 34579999854 355544 4566677788874 1 1 1 0233346566
Q ss_pred cHHHHHHHHHHhCCcEEEEe-CChhhHHHHHHHHHHHHhcCCCceEeeeecc
Q 009559 252 TVSEIVDSMEERGINMLFVL-GGNGTHAGANAIHNECRKRRMKVAVVGVPKT 302 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vI-GGdGT~~gA~~L~ee~~kr~~~I~VIGIPKT 302 (532)
...++++..+.++++.++.+ ||.+.+-+...=. ...+|||||-.
T Consensus 55 ~l~~~~~~a~~~g~~ViIa~AG~aahLpgvvA~~-------t~~PVIgVPv~ 99 (173)
T 4grd_A 55 EMFDYAEKARERGLRAIIAGAGGAAHLPGMLAAK-------TTVPVLGVPVA 99 (173)
T ss_dssp HHHHHHHHHTTTTCSEEEEEEESSCCHHHHHHHH-------CCSCEEEEEEC
T ss_pred HHHHHHHHHHhcCCeEEEEeccccccchhhheec-------CCCCEEEEEcC
Confidence 67788888888999977665 7778777764322 46899999976
No 142
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=31.21 E-value=1.6e+02 Score=34.28 Aligned_cols=105 Identities=10% Similarity=0.134 Sum_probs=57.7
Q ss_pred CcEEEEEeCCCCcch----HHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccC
Q 009559 174 EVKAAIVTCGGLCPG----LNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRG 249 (532)
Q Consensus 174 ~~kiaIvt~GG~cPG----lNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~ 249 (532)
-.||+|+-+|...-| .--.-+.+.+.|.+.|+ +++.+..--.. +.......+. .+++
T Consensus 7 ~~kIlIig~G~i~ig~a~E~d~sg~~~~~al~~~G~-~vv~v~~~~~~--------~~~~~~~ad~------~~i~---- 67 (1073)
T 1a9x_A 7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEGY-RVINVNSNPAT--------IMTDPEMADA------TYIE---- 67 (1073)
T ss_dssp CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTC-EEEEECSCTTC--------GGGCGGGSSE------EECS----
T ss_pred CCEEEEECCCcccccccccccchHHHHHHHHHHcCC-EEEEEeCCccc--------ccCChhhCcE------EEEC----
Confidence 368999988875322 22233456677778898 57665321111 0011111111 1111
Q ss_pred CccHHHHHHHHHHhCCcEEEE-eCChhhHHHHHHHHH--HHHhcCCCceEeee
Q 009559 250 APTVSEIVDSMEERGINMLFV-LGGNGTHAGANAIHN--ECRKRRMKVAVVGV 299 (532)
Q Consensus 250 ~~~~~~ivd~L~~~gId~L~v-IGGdGT~~gA~~L~e--e~~kr~~~I~VIGI 299 (532)
+.+.+.+.+.+++.++|+++. .||+.....+..|++ .+++.| +.++|-
T Consensus 68 p~~~e~i~~i~~~~~~D~V~p~~g~~~~l~~~~~l~~~~~le~~g--v~~~G~ 118 (1073)
T 1a9x_A 68 PIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFG--VTMIGA 118 (1073)
T ss_dssp CCCHHHHHHHHHHHCCSEEECSSSHHHHHHHHHHHHHTTHHHHHT--CEECSS
T ss_pred CCCHHHHHHHHHHhCCCEEEeccCCchHHHHHHHHHHhhHHHHcC--CeeeCC
Confidence 135677888888899998885 566555666666654 344433 556543
No 143
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=31.17 E-value=3.8e+02 Score=26.07 Aligned_cols=100 Identities=19% Similarity=0.168 Sum_probs=58.4
Q ss_pred EEeCCCCcchHH-HHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecc----------
Q 009559 179 IVTCGGLCPGLN-DVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVS---------- 247 (532)
Q Consensus 179 Ivt~GG~cPGlN-avIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTS---------- 247 (532)
|+.+||.-|-++ .-+..+++.+...++ .|. +..| .++++.++.+...|=..+..+
T Consensus 104 i~~~gGe~p~~~~~~~~~li~~i~~~~~-~i~-~s~g------------~l~~e~l~~L~~ag~~~v~i~let~~~~~~~ 169 (348)
T 3iix_A 104 IVLQSGEDPYXMPDVISDIVKEIKKMGV-AVT-LSLG------------EWPREYYEKWKEAGADRYLLRHETANPVLHR 169 (348)
T ss_dssp EEEEESCCGGGTTHHHHHHHHHHHTTSC-EEE-EECC------------CCCHHHHHHHHHHTCCEEECCCBCSCHHHHH
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHhcCc-eEE-EecC------------CCCHHHHHHHHHhCCCEEeeeeeeCCHHHHH
Confidence 344577778888 888899988876665 332 2222 135555555555442211110
Q ss_pred --cCC---ccHHHHHHHHHHhCCc--EEEEeCC-hhhHHHHHHHHHHHHhcCC
Q 009559 248 --RGA---PTVSEIVDSMEERGIN--MLFVLGG-NGTHAGANAIHNECRKRRM 292 (532)
Q Consensus 248 --R~~---~~~~~ivd~L~~~gId--~L~vIGG-dGT~~gA~~L~ee~~kr~~ 292 (532)
+.. .+.-+.++.+++.||. .-+++|= +.|......+.+.+++-+.
T Consensus 170 ~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G~p~et~e~~~~~~~~l~~l~~ 222 (348)
T 3iix_A 170 KLRPDTSFENRLNCLLTLKELGYETGAGSMVGLPGQTIDDLVDDLLFLKEHDF 222 (348)
T ss_dssp HHSTTSCHHHHHHHHHHHHHTTCEEEECBEESCTTCCHHHHHHHHHHHHHHTC
T ss_pred HhCCCcCHHHHHHHHHHHHHhCCeeccceEEeCCCCCHHHHHHHHHHHHhcCC
Confidence 111 1344566778888874 3356776 6788777777777766543
No 144
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=31.06 E-value=68 Score=24.93 Aligned_cols=50 Identities=10% Similarity=0.298 Sum_probs=38.5
Q ss_pred eecccCCccHHHHHHHHHHhCCc---------EEEEeCChhhHHHHHHHHHHHHhcCCC
Q 009559 244 LGVSRGAPTVSEIVDSMEERGIN---------MLFVLGGNGTHAGANAIHNECRKRRMK 293 (532)
Q Consensus 244 LGTSR~~~~~~~ivd~L~~~gId---------~L~vIGGdGT~~gA~~L~ee~~kr~~~ 293 (532)
+|+-+...+.+++.+.|++.|+. +-+.+|...+...|..+.+.+++.|++
T Consensus 14 vGaf~~~~~A~~~~~~L~~~g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~g~~ 72 (79)
T 1x60_A 14 IGAFKVKANADSLASNAEAKGFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGFD 72 (79)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHTSC
T ss_pred EEEcCCHHHHHHHHHHHHhCCCCeEEecCCcEEEEEECCcCCHHHHHHHHHHHHHcCCc
Confidence 35555556678888889888887 456778888888999998888887774
No 145
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=30.78 E-value=41 Score=31.20 Aligned_cols=87 Identities=21% Similarity=0.335 Sum_probs=53.3
Q ss_pred CcEEEEEeCC-CCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCcc
Q 009559 174 EVKAAIVTCG-GLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPT 252 (532)
Q Consensus 174 ~~kiaIvt~G-G~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~ 252 (532)
..+++|++.| -|-|-+ ..+...|+.+|+. | + + .+.+--|....
T Consensus 3 ~~~V~Iimgs~SD~~v~----~~a~~~l~~~gi~--~------------e---v---------------~V~SaHR~p~~ 46 (163)
T 3ors_A 3 AMKVAVIMGSSSDWKIM----QESCNMLDYFEIP--Y------------E---K---------------QVVSAHRTPKM 46 (163)
T ss_dssp CCCEEEEESCGGGHHHH----HHHHHHHHHTTCC--E------------E---E---------------EECCTTTSHHH
T ss_pred CCeEEEEECcHHHHHHH----HHHHHHHHHcCCC--E------------E---E---------------EEECCcCCHHH
Confidence 4578888744 244544 4566666778874 0 1 1 12223355556
Q ss_pred HHHHHHHHHHhCCcEEEEe-CChhhHHHHHHHHHHHHhcCCCceEeeeeccc
Q 009559 253 VSEIVDSMEERGINMLFVL-GGNGTHAGANAIHNECRKRRMKVAVVGVPKTI 303 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vI-GGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTI 303 (532)
..++++..++.+++.++.+ |+.+.+-+...=. ...+|||||-..
T Consensus 47 ~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~-------t~~PVIgVP~~~ 91 (163)
T 3ors_A 47 MVQFASEARERGINIIIAGAGGAAHLPGMVASL-------TTLPVIGVPIET 91 (163)
T ss_dssp HHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHH-------CSSCEEEEEECC
T ss_pred HHHHHHHHHhCCCcEEEEECCchhhhHHHHHhc-------cCCCEEEeeCCC
Confidence 7788888888899976665 4555555543221 468999999654
No 146
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=30.44 E-value=4.2e+02 Score=26.37 Aligned_cols=32 Identities=6% Similarity=-0.074 Sum_probs=24.1
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCc
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVK 206 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~ 206 (532)
..+|||+.. -.-|=...++.++...+..+|+.
T Consensus 25 s~~Igvv~~-~~~~f~~~l~~gi~~~a~~~g~~ 56 (412)
T 4fe7_A 25 RHRITLLFN-ANKAYDRQVVEGVGEYLQASQSE 56 (412)
T ss_dssp CEEEEEECC-TTSHHHHHHHHHHHHHHHHHTCC
T ss_pred CceEEEEeC-CcchhhHHHHHHHHHHHHhcCCC
Confidence 457999984 55566677888888888888874
No 147
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=30.30 E-value=3.6e+02 Score=27.77 Aligned_cols=157 Identities=16% Similarity=0.111 Sum_probs=78.7
Q ss_pred EEeCCCCcchHHH--HHHHHHHHHHHc-CCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC-----
Q 009559 179 IVTCGGLCPGLND--VIRHIVITLEIY-GVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA----- 250 (532)
Q Consensus 179 Ivt~GG~cPGlNa--vIr~iv~~l~~y-gv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~----- 250 (532)
|+.+||. |=++. .+..++..+... +++.| .+ +-.|.+... ..+|++.++.+....--.++..-..
T Consensus 166 V~ltGGE-Pll~~d~~L~~il~~l~~~~~v~~i-~i--~Tng~~~~p---~~it~e~l~~L~~~~~v~Isl~~~~~~ei~ 238 (416)
T 2a5h_A 166 VLLSGGD-ALLVSDETLEYIIAKLREIPHVEIV-RI--GSRTPVVLP---QRITPELVNMLKKYHPVWLNTHFNHPNEIT 238 (416)
T ss_dssp EEEEESC-TTSSCHHHHHHHHHHHHTSTTCCEE-EE--ECSHHHHCG---GGCCHHHHHHHGGGCSEEEEECCCSGGGCC
T ss_pred EEEECCC-CCCCCHHHHHHHHHHHHhcCCccEE-EE--Eeccccccc---ccCCHHHHHHHHhcCcEEEEEecCCHHHHh
Confidence 6667886 33443 477888887655 44322 22 444421110 1145555555544411122222111
Q ss_pred ccHHHHHHHHHHhCCcEEE---Ee-CChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHH
Q 009559 251 PTVSEIVDSMEERGINMLF---VL-GGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRA 326 (532)
Q Consensus 251 ~~~~~ivd~L~~~gId~L~---vI-GGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~a 326 (532)
....+.++.|++.|+...+ ++ |=|++......|.+.+.+.+.....+..... .+++. =|.+....+.+.
T Consensus 239 ~~v~~ai~~L~~aGi~v~i~~vll~GvNd~~e~l~~l~~~l~~lgv~~~~i~~~~~----~~g~~---~~~~~~~~~~ei 311 (416)
T 2a5h_A 239 EESTRACQLLADAGVPLGNQSVLLRGVNDCVHVMKELVNKLVKIRVRPYYIYQCDL----SLGLE---HFRTPVSKGIEI 311 (416)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCTTTTCSHHHHHHHHHHHHHTTEEEEEEECCCC----BTTCG---GGCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEECCCCCCHHHHHHHHHHHHHcCCceEEEeecCC----CCCcc---cccCCcccHHHH
Confidence 2345667788888885422 22 5577777777888877765543322222111 12222 244555666666
Q ss_pred HHHHHHhhhhccccEEEEEecCC
Q 009559 327 INSAYIEAHSAYHGIGIVKLMGR 349 (532)
Q Consensus 327 I~~a~~eA~S~~~~V~vVevMGR 349 (532)
++.++..........+++++-|.
T Consensus 312 l~~l~~~~~G~~~p~~v~~~pgg 334 (416)
T 2a5h_A 312 IEGLRGHTSGYCVPTFVVDAPGG 334 (416)
T ss_dssp HHTTBTTBCGGGCCEEEEEETTT
T ss_pred HHHHHHHCCCCCCceEEEECCCC
Confidence 66654433222123577777654
No 148
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=30.24 E-value=47 Score=33.44 Aligned_cols=55 Identities=16% Similarity=0.229 Sum_probs=39.9
Q ss_pred cccCC--ccHHHHHHHHHHhCCcEEEEeCChh------hHHHHHHHHHHHHh-cCCCceEeeee
Q 009559 246 VSRGA--PTVSEIVDSMEERGINMLFVLGGNG------THAGANAIHNECRK-RRMKVAVVGVP 300 (532)
Q Consensus 246 TSR~~--~~~~~ivd~L~~~gId~L~vIGGdG------T~~gA~~L~ee~~k-r~~~I~VIGIP 300 (532)
|||+. ..++.++..+.+.||+-++++.||- .+..|..|.+.+++ .+..|.|.+-|
T Consensus 90 tc~~~~~~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~~~A~dLv~~ir~~~~f~IgvA~yP 153 (304)
T 3fst_A 90 TCIDATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYP 153 (304)
T ss_dssp ESTTSCHHHHHHHHHHHHHTTCCEEEEECCCCC------CCCHHHHHHHHHHHCCCEEEEEECT
T ss_pred ecCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Confidence 45542 3567788888999999999999983 34447788877765 35667777776
No 149
>2omk_A Hypothetical protein; succinimide, thiamin pyrophosphokinase, structural genomics, protein structure initiative; 1.80A {Bacteroides thetaiotaomicron}
Probab=30.06 E-value=3.7e+02 Score=25.67 Aligned_cols=92 Identities=15% Similarity=0.263 Sum_probs=53.0
Q ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCce------eec-CCHHHHhhhhhcCCcceecc
Q 009559 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELT------EMP-LSRKVVQNIHLSGGSLLGVS 247 (532)
Q Consensus 175 ~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~------~i~-Lt~~~V~~i~~~GGSiLGTS 247 (532)
++ ++|.+||+.|= .+..+.+. .... -++|+-.|..=|++.++. ++. ++++..+.+.. .+.-..
T Consensus 32 ~~-v~Iv~~G~~~~-~~~~~~~~---~~~~--~iI~aDgGa~~L~~~gi~Pd~ivGDfDSi~~e~~~~~~~---~i~~~~ 101 (231)
T 2omk_A 32 PQ-AIILANGEYPA-HELPLRLL---AEAQ--FVVCCXXAANEYISRGHTPDVIIGDGDSLLPEYKKRFSS---IILQIS 101 (231)
T ss_dssp CS-EEEECSSSCCC-SHHHHHHH---HHCS--CEEEC--CHHHHHHTTCCCSEEESCGGGSCHHHHHHHGG---GEECCC
T ss_pred CE-EEEEECCCCch-hHHHHHHH---hcCC--EEEEEhHHHHHHHHcCCCCCEEEeCCcCCCHHHHHhcCC---EEEeCC
Confidence 44 55566777652 22222222 2332 388999999877765432 111 45655554431 122111
Q ss_pred c-CCccHHHHHHHHHHhCCcEEEEeCChhh
Q 009559 248 R-GAPTVSEIVDSMEERGINMLFVLGGNGT 276 (532)
Q Consensus 248 R-~~~~~~~ivd~L~~~gId~L~vIGGdGT 276 (532)
. ..-|.++++..+.+++.+.++++|+-|.
T Consensus 102 ~kD~TD~e~Al~~a~~~g~~~I~i~Ga~Gg 131 (231)
T 2omk_A 102 DQETNDQTKAVHYLQSKGIRKIAIVGATGK 131 (231)
T ss_dssp SSCCCHHHHHHHHHHHTTCCEEEEESCSSS
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEECccCC
Confidence 1 1227899999999999999999999764
No 150
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=29.62 E-value=52 Score=25.99 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=40.0
Q ss_pred eecccCCccHHHHHHHHHHhCCc---------EEEEeCChhhHHHHHHHHHHHHhcCCCceE
Q 009559 244 LGVSRGAPTVSEIVDSMEERGIN---------MLFVLGGNGTHAGANAIHNECRKRRMKVAV 296 (532)
Q Consensus 244 LGTSR~~~~~~~ivd~L~~~gId---------~L~vIGGdGT~~gA~~L~ee~~kr~~~I~V 296 (532)
+|+-+...+.+++.+.|+..|+. +-+.+|...+...|.++.+.+++.|++-.+
T Consensus 14 vGaF~~~~~A~~l~~~L~~~G~~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~~g~~~~i 75 (81)
T 1uta_A 14 CGSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCI 75 (81)
T ss_dssp CCEESCHHHHHHHHHHHHHHTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHHHCCSCCB
T ss_pred EEEcCCHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHHcCCCcEE
Confidence 35555556778888999988887 457788888888899888888877765443
No 151
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=29.32 E-value=38 Score=34.03 Aligned_cols=99 Identities=23% Similarity=0.290 Sum_probs=59.3
Q ss_pred HHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCc-ce-ecccCC--ccHHHHHHHHHHhCCcEEEE
Q 009559 195 HIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGS-LL-GVSRGA--PTVSEIVDSMEERGINMLFV 270 (532)
Q Consensus 195 ~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGS-iL-GTSR~~--~~~~~ivd~L~~~gId~L~v 270 (532)
..+..+...+. ..+-+.+|-.|-... -|.+.+..++..|=. +. =|||+. ..++.++..+++.||+.+++
T Consensus 33 ~~~~~L~~~~p-d~vsVT~~~~g~~r~------~t~~~a~~i~~~g~~~i~Hltc~~~~~~~l~~~L~~~~~~GI~niLa 105 (310)
T 3apt_A 33 RTLEELKAFRP-AFVSITYGAMGSTRE------RSVAWAQRIQSLGLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLA 105 (310)
T ss_dssp HHHHHHGGGCC-SEEEECCCSTTCSHH------HHHHHHHHHHHTTCCBCEEEECTTSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHhcCCC-CEEEEecCCCCCcch------hHHHHHHHHHHhCCCeEEEeecCCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 33444444554 355666666553211 133445555533322 22 245542 35677888889999999999
Q ss_pred eCCh-----h---h----HHHHHHHHHHHHhc-C--CCceEeeee
Q 009559 271 LGGN-----G---T----HAGANAIHNECRKR-R--MKVAVVGVP 300 (532)
Q Consensus 271 IGGd-----G---T----~~gA~~L~ee~~kr-~--~~I~VIGIP 300 (532)
+.|| | . +..|..|.+.+++. | +.|.|.+-|
T Consensus 106 LrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~~g~~f~igvA~yP 150 (310)
T 3apt_A 106 LRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYP 150 (310)
T ss_dssp ECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEEEECT
T ss_pred EcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 9999 3 1 44577787777765 4 567777766
No 152
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=28.63 E-value=2.6e+02 Score=27.21 Aligned_cols=83 Identities=12% Similarity=0.167 Sum_probs=53.3
Q ss_pred cchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccC---CccHHHHHHHHHH
Q 009559 186 CPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRG---APTVSEIVDSMEE 262 (532)
Q Consensus 186 cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~---~~~~~~ivd~L~~ 262 (532)
||.-..-...++..+...|.++|.-+..-+. + -..+.....+.+...||.+++.... ..|...++..|++
T Consensus 120 ~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~------~-g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~ 192 (371)
T 4f06_A 120 SFTMFQNTVPAAKVAKQKGATKVAIAVSDYG------P-GIDAETAFKKTFEAEGGKVVEAVRMPLSTTDFGPIMQRIKN 192 (371)
T ss_dssp SCCHHHHHHHHHHHHHHTTCCEEEEEEESSH------H-HHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHH
T ss_pred ccchhhhhhhhhhhhhhcCceEEEEEcCCcc------c-chhHHHHHHHHHHhcCCceEEEEecCcccccHHHHHHHHHh
Confidence 3444555666777777888887755432111 1 0112223344566789998887654 3478889999999
Q ss_pred hCCcEEEEeCChh
Q 009559 263 RGINMLFVLGGNG 275 (532)
Q Consensus 263 ~gId~L~vIGGdG 275 (532)
.+-|.+++....|
T Consensus 193 ~~pd~v~~~~~~~ 205 (371)
T 4f06_A 193 SGADMIFTFLPAG 205 (371)
T ss_dssp HTCSEEEEECCTT
T ss_pred cCCCEEEEEeccC
Confidence 9999998776443
No 153
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich, hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB: 1fq1_A*
Probab=28.39 E-value=3.4e+02 Score=24.67 Aligned_cols=109 Identities=15% Similarity=0.099 Sum_probs=60.7
Q ss_pred hcCCcceecccCC-------ccHHHHHHHHHHhCCcEEEEeCChhhHHH--HHHHHHHHHhcCCCceEeeeecccccCCC
Q 009559 238 LSGGSLLGVSRGA-------PTVSEIVDSMEERGINMLFVLGGNGTHAG--ANAIHNECRKRRMKVAVVGVPKTIDNDIL 308 (532)
Q Consensus 238 ~~GGSiLGTSR~~-------~~~~~ivd~L~~~gId~L~vIGGdGT~~g--A~~L~ee~~kr~~~I~VIGIPKTIDNDI~ 308 (532)
..||.+..+.+-+ .+..+-++.|+++||..++.+-.++-+.. ...+.+.+.+. ++..+.+|- -|...+
T Consensus 38 ~~~g~l~~~~~Pg~~~~~~~~~~~~d~~~L~~~gi~~Vv~l~~~~E~~~~~~~~~~~~~~~~--gi~~~~~pi-~d~~~p 114 (212)
T 1fpz_A 38 NCSQFLGLCALPGCKFKDVRRNVQKDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQC--GIITHHHPI-ADGGTP 114 (212)
T ss_dssp TCCCEEEEESCTTCEETTEECCHHHHHHHHHHHTCCEEEECCCHHHHHHTTCTTHHHHHHHT--TCEEEECCC-CTTCCC
T ss_pred CCCCeEEEecCCCCCCccchhhHHHHHHHHHHCCCCEEEEcCCHHHHHhcCCccHHHHHHHc--CCEEEEecC-CCCCCC
Confidence 3456555554422 14567789999999999999998754432 11223334443 467888873 243333
Q ss_pred CCCccCChhhHHHHHHHHHHHHHHhhhhccccEEEEEecCC-CccHHHHHHhH
Q 009559 309 LMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGR-SSGYIAMHASL 360 (532)
Q Consensus 309 ~tD~SfGFdTAv~~a~~aI~~a~~eA~S~~~~V~vVevMGR-~sG~LA~~aaL 360 (532)
-. ..+..+.+.|+.+.. ....|.|.-..|. .+|.+++..-+
T Consensus 115 ~~-------~~~~~~~~~i~~~~~----~~~~VlVHC~aG~gRTg~~~a~~L~ 156 (212)
T 1fpz_A 115 DI-------ASCCEIMEELTTCLK----NYRKTLIHSYGGLGRSCLVAACLLL 156 (212)
T ss_dssp CH-------HHHHHHHHHHHHHHH----TTCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CH-------HHHHHHHHHHHHHHh----CCCCEEEECCCCCCHHHHHHHHHHH
Confidence 21 344444455544321 2345777777775 46766554333
No 154
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=28.18 E-value=39 Score=31.70 Aligned_cols=85 Identities=21% Similarity=0.311 Sum_probs=52.1
Q ss_pred cEEEEEeCC-CCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccH
Q 009559 175 VKAAIVTCG-GLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTV 253 (532)
Q Consensus 175 ~kiaIvt~G-G~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~ 253 (532)
.+++|++.| -|-|-+ ..+...|+.+|+. | + +. +.+--|.....
T Consensus 13 ~~V~IimGS~SD~~v~----~~a~~~L~~~Gi~--~------------e---v~---------------V~SaHR~p~~~ 56 (174)
T 3kuu_A 13 VKIAIVMGSKSDWATM----QFAADVLTTLNVP--F------------H---VE---------------VVSAHRTPDRL 56 (174)
T ss_dssp CCEEEEESSGGGHHHH----HHHHHHHHHTTCC--E------------E---EE---------------ECCTTTCHHHH
T ss_pred CcEEEEECcHHHHHHH----HHHHHHHHHcCCC--E------------E---EE---------------EEcccCCHHHH
Confidence 368888744 244544 4566667788874 1 1 11 12223555566
Q ss_pred HHHHHHHHHhCCcEEEEe-CChhhHHHHHHHHHHHHhcCCCceEeeeecc
Q 009559 254 SEIVDSMEERGINMLFVL-GGNGTHAGANAIHNECRKRRMKVAVVGVPKT 302 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vI-GGdGT~~gA~~L~ee~~kr~~~I~VIGIPKT 302 (532)
.++++..++.+++.++.+ |+.+.+-+.. +- ....+|||||-.
T Consensus 57 ~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~ 99 (174)
T 3kuu_A 57 FSFAEQAEANGLHVIIAGNGGAAHLPGML--AA-----KTLVPVLGVPVQ 99 (174)
T ss_dssp HHHHHHTTTTTCSEEEEEEESSCCHHHHH--HH-----TCSSCEEEEEEC
T ss_pred HHHHHHHHhCCCcEEEEECChhhhhHHHH--Hh-----ccCCCEEEeeCC
Confidence 778888888899976665 4555555543 21 246899999964
No 155
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=27.60 E-value=1e+02 Score=29.70 Aligned_cols=51 Identities=29% Similarity=0.345 Sum_probs=40.3
Q ss_pred CCccHHHHHHHHHHh-C----CcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecc
Q 009559 249 GAPTVSEIVDSMEER-G----INMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKT 302 (532)
Q Consensus 249 ~~~~~~~ivd~L~~~-g----Id~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKT 302 (532)
++.|+..|-+.|.++ . =|-++|=||-|-+..|..+-++ -|+.|+|+|+-|-
T Consensus 64 g~DDya~m~Evl~RR~~r~~~PDLiliDGGkgQl~~a~~vl~~---lg~~i~v~glaK~ 119 (220)
T 2nrt_A 64 HPDDYESIRTVVKRRYSKHPLPNLLFVDGGIGQVNAAIEALKE---IGKDCPVVGLAKK 119 (220)
T ss_dssp SCCHHHHHHHHHHHHHTTSCCCSEEEESSSHHHHHHHHHHHHH---TTCCCCEEEECTT
T ss_pred CCCHHHHHHHHHHHHhccCCCCCEEEEeCCHHHHHHHHHHHHH---cCCCCeEEEEECC
Confidence 346888888888876 2 4778888999999988877664 4678999999993
No 156
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=27.57 E-value=85 Score=31.18 Aligned_cols=97 Identities=9% Similarity=0.002 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc--cHHHHHHHHHHhCCcEEE
Q 009559 192 VIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP--TVSEIVDSMEERGINMLF 269 (532)
Q Consensus 192 vIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~--~~~~ivd~L~~~gId~L~ 269 (532)
-.+.+++.+...|.+++.-+.. ++.+- ..+.....+.|...||++.+..++.. |....+..+ +.+.|++|
T Consensus 109 ~~~~~a~~a~~~g~k~vail~~------~~~yG-~~~~~~F~~~~~~~Gg~vv~~~~y~~~~d~~~~l~~i-~~~pDaV~ 180 (325)
T 2h4a_A 109 EAESAANKMWNDGVRNPLVAMP------QNDLG-QRVGNAFNVRWQQLAGTDANIRYYNLPADVTYFVQEN-NSNTTALY 180 (325)
T ss_dssp HHHHHHHHHHHTTCCSCEEEEE------SSHHH-HHHHHHHHHHHHHHHSSCCEEEEESSTTHHHHHHHHS-TTCCCEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEc------CCcHH-HHHHHHHHHHHHHcCCCcceeEecCCHHHHHHHHHhc-CCCCCEEE
Confidence 3577788777778876644321 11110 11334445667788999988766543 444444444 27999999
Q ss_pred EeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 270 VLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 270 vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
+.|... .+..|...++..+.++++++-
T Consensus 181 ~~~~~~---~~~~i~~~~~~~g~~~pl~~~ 207 (325)
T 2h4a_A 181 AVASPT---ELAEXKGYLTNIVPNLAIYAS 207 (325)
T ss_dssp ECCCHH---HHHHHHHHHTTTCTTCEEEEC
T ss_pred EeCCHH---HHhhhhhhHhhcCCCCCEEEe
Confidence 987543 456677777766778888764
No 157
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB: 2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Probab=27.38 E-value=2.6e+02 Score=23.80 Aligned_cols=52 Identities=12% Similarity=0.155 Sum_probs=34.5
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHH----HHHHHHHHHhcCCCceEeeeecccccCCC
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAG----ANAIHNECRKRRMKVAVVGVPKTIDNDIL 308 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~g----A~~L~ee~~kr~~~I~VIGIPKTIDNDI~ 308 (532)
++-.+.|+++||..++-+..+..... ...+.+.+.+. ++..+.+| .-|++.+
T Consensus 18 ~~d~~~L~~~gi~~Vi~l~~~~e~~~~~~~~~~~~~~~~~~--gi~~~~~p-~~d~~~p 73 (161)
T 2i6j_A 18 ENEILEWRKEGVKRVLVLPEDWEIEESWGDKDYYLSILKKN--GLQPLHIP-IPDGGVP 73 (161)
T ss_dssp HHHHHHHHHHTCCEEEECSCHHHHHHHHSCHHHHHHHHHHT--TCEEEECC-CCTTCCC
T ss_pred HHHHHHHHHCCCCEEEEcCchhhhhhhccchhhHHHHHHHc--CceEEEec-CCCCCCC
Confidence 44567889999999999998865432 12333334443 47889998 4466655
No 158
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=26.77 E-value=44 Score=28.02 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=21.1
Q ss_pred HHHHHHHHHhcCCCceEeeeecccccCCC
Q 009559 280 ANAIHNECRKRRMKVAVVGVPKTIDNDIL 308 (532)
Q Consensus 280 A~~L~ee~~kr~~~I~VIGIPKTIDNDI~ 308 (532)
...|.+.+++.+...-|||.|+++|+...
T Consensus 40 ~~~l~~li~e~~v~~iVvGlP~~mdGt~~ 68 (98)
T 1iv0_A 40 VEALLDFVRREGLGKLVVGLPLRTDLKES 68 (98)
T ss_dssp HHHHHHHHHHHTCCEEEEECCCCCCSSSC
T ss_pred HHHHHHHHHHcCCCEEEEeeccCCCCCcC
Confidence 34555555666677889999999988763
No 159
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=26.22 E-value=61 Score=30.25 Aligned_cols=50 Identities=20% Similarity=0.225 Sum_probs=35.9
Q ss_pred ccHHHHHHHHHHhCCcEEEEeCChh----hHHHHHHHHHHHHhcCCCceEeeee
Q 009559 251 PTVSEIVDSMEERGINMLFVLGGNG----THAGANAIHNECRKRRMKVAVVGVP 300 (532)
Q Consensus 251 ~~~~~ivd~L~~~gId~L~vIGGdG----T~~gA~~L~ee~~kr~~~I~VIGIP 300 (532)
.+.++.++.+++.|++++=+...+. +-..+.++.+.+++.|+++..++.|
T Consensus 16 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 69 (281)
T 3u0h_A 16 TSLVLYLDLARETGYRYVDVPFHWLEAEAERHGDAAVEAMFQRRGLVLANLGLP 69 (281)
T ss_dssp CCHHHHHHHHHHTTCSEECCCHHHHHHHHHHHCHHHHHHHHHTTTCEECCEECC
T ss_pred CCHHHHHHHHHHcCCCEEEecHHHHHHHhcccCHHHHHHHHHHcCCceEEeccc
Confidence 3678888899999999887766543 2234566777777788877767665
No 160
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=26.03 E-value=2.1e+02 Score=25.57 Aligned_cols=87 Identities=17% Similarity=0.179 Sum_probs=54.1
Q ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCH-HHHhhhhhcCCcceecccCC-
Q 009559 173 EEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSR-KVVQNIHLSGGSLLGVSRGA- 250 (532)
Q Consensus 173 ~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~-~~V~~i~~~GGSiLGTSR~~- 250 (532)
...|+-+.|.||+.--+..-+-+ ..+...|++ |+ +-+ ...++ +.++.+....-.++|.|-..
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va--~~l~~~G~e-Vi---------~lG----~~~p~e~lv~aa~~~~~diV~lS~~~~ 80 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVA--RALRDAGFE-VV---------YTG----LRQTPEQVAMAAVQEDVDVIGVSILNG 80 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHH--HHHHHTTCE-EE---------CCC----SBCCHHHHHHHHHHTTCSEEEEEESSS
T ss_pred CCCEEEEEeCCCCccHHHHHHHH--HHHHHCCCE-EE---------ECC----CCCCHHHHHHHHHhcCCCEEEEEeech
Confidence 45688899999987655543322 234678884 53 111 11233 34556666666777755432
Q ss_pred ---ccHHHHHHHHHHhCC-cEEEEeCChh
Q 009559 251 ---PTVSEIVDSMEERGI-NMLFVLGGNG 275 (532)
Q Consensus 251 ---~~~~~ivd~L~~~gI-d~L~vIGGdG 275 (532)
....++++.|++.+. +..+++||--
T Consensus 81 ~~~~~~~~~i~~L~~~g~~~i~v~vGG~~ 109 (161)
T 2yxb_A 81 AHLHLMKRLMAKLRELGADDIPVVLGGTI 109 (161)
T ss_dssp CHHHHHHHHHHHHHHTTCTTSCEEEEECC
T ss_pred hhHHHHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 246778888998887 6788888854
No 161
>2gd9_A Hypothetical protein YYAP; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 2.30A {Bacillus subtilis}
Probab=25.69 E-value=35 Score=31.01 Aligned_cols=47 Identities=11% Similarity=0.156 Sum_probs=36.6
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCC--CceEeeeeccccc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRM--KVAVVGVPKTIDN 305 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~--~I~VIGIPKTIDN 305 (532)
+.+++++.|++.+++-++|+||-..++...+ .++ .+.+.-+|+.+-+
T Consensus 106 ~l~~~l~~L~~~~~~~i~v~GG~~l~~~~l~-------~glvDel~l~~~P~~lG~ 154 (189)
T 2gd9_A 106 NILEEVNKLKKNPGKDIWLYGGASLITTFIN-------LGLVDEFRLSIHPVVLGE 154 (189)
T ss_dssp HHHHHHHHHHHSCCSEEEEEECHHHHHHHHH-------TTCCCEEEEEECSEECSS
T ss_pred CHHHHHHHHHhCCCCeEEEEChHHHHHHHHH-------CCCceEEEEEEeCEEeCC
Confidence 6789999999999999999999776655443 222 4788888988854
No 162
>3jtw_A Dihydrofolate reductase; YP_805003.1, structural GE joint center for structural genomics, JCSG, protein structu initiative; 1.90A {Pediococcus pentosaceus atcc 25745}
Probab=25.68 E-value=28 Score=31.70 Aligned_cols=45 Identities=13% Similarity=0.248 Sum_probs=35.7
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCC--CceEeeeeccc
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRM--KVAVVGVPKTI 303 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~--~I~VIGIPKTI 303 (532)
+.+++++.|++.+++-++|+||-...+.+. +.++ .+.+.-+|+.+
T Consensus 97 ~l~~~l~~l~~~~~~~i~v~GG~~l~~~~l-------~~~lvDel~l~~~p~~~ 143 (178)
T 3jtw_A 97 SPVELVKRIQKEKGKDVWIVGGAKIIDPLV-------QANLIDTYILTTVPIFL 143 (178)
T ss_dssp CHHHHHHHHHTSSCCEEEEEECHHHHHHHH-------HTTCCSEEEEEEESCCC
T ss_pred CHHHHHHHHHhCCCCEEEEEChHHHHHHHH-------HCCCceEEEEEEecEEE
Confidence 788999999999999999999977665443 1222 57888899988
No 163
>3ky8_A Putative riboflavin biosynthesis protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE UNL; 2.12A {Shewanella loihica}
Probab=25.38 E-value=32 Score=32.08 Aligned_cols=47 Identities=15% Similarity=0.411 Sum_probs=34.1
Q ss_pred ccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCC--CceEeeeeccccc
Q 009559 251 PTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRM--KVAVVGVPKTIDN 305 (532)
Q Consensus 251 ~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~--~I~VIGIPKTIDN 305 (532)
.+.+++++.|++.+++-++|+||-. .+. .|. .++ .+.+.-+|+.+-.
T Consensus 113 ~~l~~~l~~L~~~~~~~i~v~GG~~-l~~--~l~-----~glvDel~l~~~P~~lG~ 161 (197)
T 3ky8_A 113 GKLVDIIADLNAKGFNELYIDGGVT-IQN--FLK-----EDLIDEMVITRFPILLGG 161 (197)
T ss_dssp SCHHHHHHHHHHTTCCEEEEESHHH-HHH--HHH-----TTCCCEEEEEEESEECSS
T ss_pred CCHHHHHHHHHhCCCCeEEEEehHH-HHH--HHh-----CCCCCEEEEEEeeEEECC
Confidence 4788999999999999999999853 322 221 222 5778888998843
No 164
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=25.37 E-value=3.3e+02 Score=28.14 Aligned_cols=124 Identities=6% Similarity=0.066 Sum_probs=63.9
Q ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCC-c----------eEEEEcccccccccCCcee-ecCCHHHHhhhhhcC
Q 009559 173 EEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGV-K----------NIVGIPFGYRGFCDKELTE-MPLSRKVVQNIHLSG 240 (532)
Q Consensus 173 ~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv-~----------~V~Gi~~Gy~GL~~~~~~~-i~Lt~~~V~~i~~~G 240 (532)
...|||||| |-..-. =+-.|++-+..++||. . +++|+.-- ..+.+++.. ++=+-+.+.......
T Consensus 11 ~~~~igi~t-~t~s~s-e~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~--~~~pd~F~se~~ttI~~I~~~a~~~ 86 (371)
T 3qi7_A 11 DDFKVAVVT-QPLSEN-KVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKH--VVLPENFTSNIDSAINKIVKLADDK 86 (371)
T ss_dssp CCEEEEEEE-CCTTTC-HHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEE--EECCTTGGGGHHHHHHHHHGGGGCT
T ss_pred CCeEEEEEc-CCcCCC-HHHHHHHHHHHHHhCCCcccchhcccccccceEEEE--eccCCCchHHHHHHHHHHHHHhhcC
Confidence 567999999 333332 2345555555556653 1 12222100 114444411 000112233333444
Q ss_pred C--cceecccCCccHHHHHHHHHHhCCcEEEEeCC--h---------------hhHHHHHHHHHHHHhcCC-CceEeeee
Q 009559 241 G--SLLGVSRGAPTVSEIVDSMEERGINMLFVLGG--N---------------GTHAGANAIHNECRKRRM-KVAVVGVP 300 (532)
Q Consensus 241 G--SiLGTSR~~~~~~~ivd~L~~~gId~L~vIGG--d---------------GT~~gA~~L~ee~~kr~~-~I~VIGIP 300 (532)
| .+|-++.. +...+.++.|++..+|.+++.|- + +-..++....+++.++|. +|..|+=|
T Consensus 87 gyk~II~n~~~-~~~~~~i~~lkekrvDgIIi~~~~~ed~~~i~~~~di~V~~Dn~~Ggy~A~~~Li~~Ghk~Ia~Isgp 165 (371)
T 3qi7_A 87 EVQAIVVSTDQ-AGLLPALQKVKEKRPEIITISAPMGDDKNQLSQFVDVNLGVSAEERGKVLAERSKEMGAKAFIHYAST 165 (371)
T ss_dssp TEEEEEEECSS-CCCHHHHHHHHHHCTTSEEEESSCCSCHHHHHHHSSEEEECCHHHHHHHHHHHHHHTTCSCEEEEEET
T ss_pred CCeEEEEECCC-cchHHHHHHHHhcCCCEEEEeccccccchhhcccCceEEEeChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 4 45655543 44467788899999997776664 1 223666667777777765 35666555
Q ss_pred c
Q 009559 301 K 301 (532)
Q Consensus 301 K 301 (532)
.
T Consensus 166 ~ 166 (371)
T 3qi7_A 166 D 166 (371)
T ss_dssp T
T ss_pred c
Confidence 4
No 165
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=25.32 E-value=6.2e+02 Score=26.67 Aligned_cols=157 Identities=17% Similarity=0.177 Sum_probs=87.3
Q ss_pred HHHHHHHHHhCCcEEEEeC-------ChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHH
Q 009559 254 SEIVDSMEERGINMLFVLG-------GNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRA 326 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIG-------GdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~a 326 (532)
+.|.+..++++-+.++|++ ||+--.-+.++.+ + .+++||.+.- +...+ .+.-|++.|++...+.
T Consensus 78 ~~I~~~~~~~~P~~I~V~tTC~~e~IGdDi~~v~~~~~~----~-~g~pVi~v~t---pgf~g-~~~~G~d~a~~~lv~~ 148 (511)
T 2xdq_B 78 DNIIRKDTEEHPDLIVLTPTCTSSILQEDLQNFVRRASL----S-TTADVLLADV---NHYRV-NELQAADRTLEQIVQF 148 (511)
T ss_dssp HHHHHHHHHHCCSEEEEECCHHHHTTCCCHHHHHHHHHH----H-CSSEEEECCC---CTTTC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCcHHHHhccCHHHHHHHhhh----c-cCCCEEEeeC---CCccc-chhHHHHHHHHHHHHH
Confidence 4455666789999999887 5554444444432 1 3577877754 23333 2334777777666554
Q ss_pred HHHHHHhhhhccccEEEEEecCCCccHHHHHHhHhcCCccEEEcCCCCCCCCChhHHHHHHHHHHhccCceEE-Eeeccc
Q 009559 327 INSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVV-CVAEGA 405 (532)
Q Consensus 327 I~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLAsg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg~~VV-VVAEGa 405 (532)
+.. .... .+ -++ +. ......+-||.+.+.....+ +-+..|++.+++.|.-++ +...|.
T Consensus 149 ~~~---~~~~--~~--~~~---~~----------~~~~~~VNiiG~~~~~~~~~-gD~~eik~lL~~~Gi~v~~~~~gg~ 207 (511)
T 2xdq_B 149 YID---KARR--QG--TLG---TS----------KTPTPSVNIIGITTLGFHNQ-HDCRELKQLMADLGIQVNLVIPAAA 207 (511)
T ss_dssp HHH---HHHH--HT--CCC---CS----------CCSSCEEEEEEECTTCTTHH-HHHHHHHHHHHHHTCEEEEEEETTC
T ss_pred Hhh---cccc--cc--ccc---cc----------cCCCCceEEEeccCCCCCCc-cHHHHHHHHHHHCCCeEEEEECCcC
Confidence 432 1110 00 000 00 01123566777765443322 346889999999998776 677665
Q ss_pred cchhhcccccccCCCCcccc-chHHHHHHHHHHHHHhcCcc
Q 009559 406 GQSLIKKTNATDASGNIVLG-DVGVLIQQETKKYFKEIGVP 445 (532)
Q Consensus 406 g~~l~~~~~~~DasGn~~l~-dIg~~L~~~I~~~f~~~g~~ 445 (532)
.-+-+. ...++.-|..+. ..+..+++.+++.| |++
T Consensus 208 ~~~ei~--~~~~A~~niv~~~~~~~~~A~~Le~~~---GiP 243 (511)
T 2xdq_B 208 TVHDLQ--RLPQAWFNLVPYREIGGLTAQYLEREF---GQP 243 (511)
T ss_dssp CTTTGG--GGGGSSEEECCCTTSSHHHHHHHHHHH---CCC
T ss_pred cHHHHH--hhccCCEEEEEchhhhHHHHHHHHHHh---CCC
Confidence 422221 223455566664 35678888887765 655
No 166
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=25.19 E-value=4.2e+02 Score=28.43 Aligned_cols=146 Identities=18% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCcEEEEeC-------ChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHH
Q 009559 253 VSEIVDSMEERGINMLFVLG-------GNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQR 325 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIG-------GdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~ 325 (532)
.+.|.+.+++++-+.++|++ ||+--.-+..+.++ .+++||.+.. ++..+..++-||+.|++...+
T Consensus 123 ~~aI~~~~~~~~P~~I~V~tTC~~eiIGdDi~~v~~~~~~~-----~~~pVi~v~t---pGf~g~s~~~G~~~a~~al~~ 194 (533)
T 1mio_A 123 KDAIHEAYEMFHPAAIGVYATCPVGLIGDDILAVAATASKE-----IGIPVHAFSC---EGYKGVSQSAGHHIANNTVMT 194 (533)
T ss_dssp HHHHHHHHHHTCCSEEEECCCHHHHHHTCCHHHHHHHHHHH-----HSSCEEECCC---CTTSSSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEcCCHHHHhcCCHHHHHHHHHHh-----hCCcEEEEeC---CCCcCcchhHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhccccEEEEEecCCCccHHHHHHhHh---cCCccEEEcCCCCCCCCChhHHHHHHHHHHhccCceEE-Ee
Q 009559 326 AINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLA---SGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVV-CV 401 (532)
Q Consensus 326 aI~~a~~eA~S~~~~V~vVevMGR~sG~LA~~aaLA---sg~ad~~LIPE~pf~leg~~~ll~~lk~~~~~kg~~VV-VV 401 (532)
.+ .... .....+-||++..+. +-+..|++.+++.|.-++ +.
T Consensus 195 ~~------------------------------~~~~~~~~~~~~VNIlG~~~~~-----gD~~eikrlL~~~Gi~v~~~~ 239 (533)
T 1mio_A 195 DI------------------------------IGKGNKEQKKYSINVLGEYNIG-----GDAWEMDRVLEKIGYHVNATL 239 (533)
T ss_dssp HT------------------------------TBCCCCCCCTTEEEEEEECCBT-----SHHHHHHHHHHHHTCEEEEEE
T ss_pred Hh------------------------------cccccCCCCCCeEEEEcCCCCh-----hhHHHHHHHHHHCCCeEEEEe
Q ss_pred eccccchhhcccccccCCCCcccc-chHHHHHHHHHHHHHhcCcce
Q 009559 402 AEGAGQSLIKKTNATDASGNIVLG-DVGVLIQQETKKYFKEIGVPI 446 (532)
Q Consensus 402 AEGag~~l~~~~~~~DasGn~~l~-dIg~~L~~~I~~~f~~~g~~~ 446 (532)
..|..-+-+. ...+|.-|..+. ..+.++++.+++.| |++.
T Consensus 240 ~gg~t~~ei~--~~~~A~~niv~~~~~~~~~A~~Leer~---GiP~ 280 (533)
T 1mio_A 240 TGDATYEKVQ--NADKADLNLVQCHRSINYIAEMMETKY---GIPW 280 (533)
T ss_dssp ETTCCHHHHH--BTTSCSEEEESCHHHHHHHHHHHHHHH---CCCE
T ss_pred CCCCCHHHHH--hhhcCCEEEEECHHHHHHHHHHHHHHh---CCCe
No 167
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=25.18 E-value=19 Score=36.26 Aligned_cols=37 Identities=16% Similarity=0.298 Sum_probs=20.5
Q ss_pred CCcEEEEEeCCCCcchHHHHH---HHHHHHHHHcCCceEEEE
Q 009559 173 EEVKAAIVTCGGLCPGLNDVI---RHIVITLEIYGVKNIVGI 211 (532)
Q Consensus 173 ~~~kiaIvt~GG~cPGlNavI---r~iv~~l~~ygv~~V~Gi 211 (532)
++.||||+ +||..+==.=.+ +++.+.|.+.|+ +|+-|
T Consensus 2 ~kkkv~vl-~GG~S~E~evSl~Sa~~v~~aL~~~gy-~v~~i 41 (357)
T 4fu0_A 2 QNKKIAVI-FGGNSTEYEVSLQSASAVFENINTNKF-DIIPI 41 (357)
T ss_dssp CCEEEEEE-EECSSTTHHHHHHHHHHHHHHSCTTTE-EEEEE
T ss_pred CCCEEEEE-ECCCccchHHHHHHHHHHHHHHhHhCC-EEEEE
Confidence 56799988 577765321112 234555556666 45444
No 168
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural genomics, NIA national institute of allergy and infectious diseases; HET: AMP; 1.58A {Streptococcus pneumoniae} PDB: 4e94_A*
Probab=24.92 E-value=68 Score=32.65 Aligned_cols=84 Identities=13% Similarity=0.259 Sum_probs=52.3
Q ss_pred cEEEEEeCCCCcch---HHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc
Q 009559 175 VKAAIVTCGGLCPG---LNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP 251 (532)
Q Consensus 175 ~kiaIvt~GG~cPG---lNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~ 251 (532)
-+||||...+.+++ .-..+...+..|+..|.+ |.-..+=+ .......||. ..
T Consensus 6 D~I~ivaPSs~~~~~~~~~~~~~~~~~~L~~~G~~-v~~~~~~~------------------~~~~~~agtd------~~ 60 (346)
T 4eys_A 6 STIGIVSLSSGIIGEDFVKHEVDLGIQRLKDLGLN-PIFLPHSL------------------KGLDFIKDHP------EA 60 (346)
T ss_dssp CEEEEECSSCCGGGSGGGHHHHHHHHHHHHHTTCE-EEECTTTT------------------SCHHHHHHCH------HH
T ss_pred cEEEEEeCCCcccccccCHHHHHHHHHHHHhCCCE-EEECCchh------------------ccCCccCCCH------HH
Confidence 37999997777765 245566677778889984 43111100 0111111111 12
Q ss_pred cHHHHHHHHHHhCCcEEEE-eCChhhHHHHHHH
Q 009559 252 TVSEIVDSMEERGINMLFV-LGGNGTHAGANAI 283 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~v-IGGdGT~~gA~~L 283 (532)
..+++.+.+..-+|+++++ +||+|+++-.-.|
T Consensus 61 Ra~dL~~a~~Dp~i~aI~~~rGG~g~~rlLp~L 93 (346)
T 4eys_A 61 RAEDLIHAFSDDSIDMILCAIGGDDTYRLLPYL 93 (346)
T ss_dssp HHHHHHHHHHCTTCCEEEECCCCSCGGGGHHHH
T ss_pred HHHHHHHHhhCCCCCEEEEcccccCHHHHHHHh
Confidence 3567778888889999876 5999999887777
No 169
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=24.46 E-value=94 Score=26.16 Aligned_cols=46 Identities=13% Similarity=0.207 Sum_probs=34.1
Q ss_pred HHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeec
Q 009559 254 SEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPK 301 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPK 301 (532)
+++.+.+++++++.+++--+..+......|.+.|++.+ +.|.-+|-
T Consensus 55 ~~l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~g--v~v~~vP~ 100 (141)
T 3nkl_A 55 KYLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLH--VEVLTIPN 100 (141)
T ss_dssp GGHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTT--CEEEECCC
T ss_pred HHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcC--CeEEECCC
Confidence 45677788899999988777666666677888887765 56777774
No 170
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=24.11 E-value=82 Score=32.29 Aligned_cols=59 Identities=19% Similarity=0.359 Sum_probs=41.7
Q ss_pred CCcceecccCCccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCC--CceEeeeeccccc
Q 009559 240 GGSLLGVSRGAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRM--KVAVVGVPKTIDN 305 (532)
Q Consensus 240 GGSiLGTSR~~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~--~I~VIGIPKTIDN 305 (532)
|-+++-.+.+..+..++++.|++.+++-+++.||-.......+ .++ .+.+.-.|+.+-.
T Consensus 271 gv~vi~~~~~~~dl~~~l~~L~~~g~~~vlveGG~~l~~s~L~-------agLVDEl~l~iaP~llG~ 331 (373)
T 2b3z_A 271 GVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGSFVK-------EGCFQEIIFYFAPKLIGG 331 (373)
T ss_dssp TCEEEECSSSSCCHHHHHHHHHHTTCCEEEEEECHHHHHHHHH-------HTCCSEEEEEEESBCCCC
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHCCCCEEEEEEhHHHHHHHHh-------CCCceEEEEEEcceEecC
Confidence 3344432222357889999999999999999999765554332 122 5888899999875
No 171
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=23.97 E-value=49 Score=31.28 Aligned_cols=51 Identities=29% Similarity=0.445 Sum_probs=35.0
Q ss_pred ccCCccHHHHHHHHHHhCCcEEEEe-CChhhHHHHHHHHHHHHhcCCCceEeeeecccc
Q 009559 247 SRGAPTVSEIVDSMEERGINMLFVL-GGNGTHAGANAIHNECRKRRMKVAVVGVPKTID 304 (532)
Q Consensus 247 SR~~~~~~~ivd~L~~~gId~L~vI-GGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTID 304 (532)
-|......++++..++.+++.++.+ |+.+.+-+...=. ...+|||||-...
T Consensus 51 HR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~-------t~~PVIgVP~~~~ 102 (183)
T 1o4v_A 51 HRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVASI-------THLPVIGVPVKTS 102 (183)
T ss_dssp TTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHH-------CSSCEEEEEECCT
T ss_pred cCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHHHHhc-------cCCCEEEeeCCCC
Confidence 3555667788888888899976655 5566666543321 4789999997653
No 172
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=23.90 E-value=1.5e+02 Score=27.22 Aligned_cols=120 Identities=10% Similarity=-0.123 Sum_probs=59.3
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHHH
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSE 255 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~~ 255 (532)
+||++...-.-|-...++.++...+..+|++ +.-+.. ..+ .....+
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~-~~~~~~------~~~---------------------------~~~~~~ 46 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLEQRYD-LALFPI------LSL---------------------------ARLKRY 46 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGGGTCE-EEECCC------CSC---------------------------CCCC--
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCE-EEEEeC------CCc---------------------------hhhHHH
Confidence 3788877666778888888888888888873 321100 000 011124
Q ss_pred HHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhh--HHHHHHHHHHHHHHh
Q 009559 256 IVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDT--AVEEAQRAINSAYIE 333 (532)
Q Consensus 256 ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdT--Av~~a~~aI~~a~~e 333 (532)
.++.+...++|++++.+.+.+. . ..+.+++ .+++||.+-...+ . -.++++|- +...+++. +. +
T Consensus 47 ~~~~l~~~~vdgiI~~~~~~~~---~-~~~~~~~--~~iPvV~~~~~~~----~-~~~V~~d~~~~~~~a~~~---L~-~ 111 (276)
T 2h0a_A 47 LENTTLAYLTDGLILASYDLTE---R-FEEGRLP--TERPVVLVDAQNP----R-YDSVYLDNRLGGRLAGAY---LA-R 111 (276)
T ss_dssp -------CCCSEEEEESCCCC----------CCS--CSSCEEEESSCCT----T-SEEEEECSHHHHHHHHHH---HT-T
T ss_pred HHHHHHhCCCCEEEEecCCCCH---H-HHHHHhh--cCCCEEEEeccCC----C-CCEEEEccHHHHHHHHHH---HH-H
Confidence 5666778899999999987652 1 2233322 3577776633332 2 23455443 33333333 22 1
Q ss_pred hhhccccEEEEEe
Q 009559 334 AHSAYHGIGIVKL 346 (532)
Q Consensus 334 A~S~~~~V~vVev 346 (532)
.. +++|+++--
T Consensus 112 -~G-~~~i~~i~~ 122 (276)
T 2h0a_A 112 -FP-GPIFAIAVE 122 (276)
T ss_dssp -SS-SCEEEEEEC
T ss_pred -cC-CCeEEEEec
Confidence 13 567877753
No 173
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=23.56 E-value=52 Score=34.01 Aligned_cols=84 Identities=12% Similarity=0.060 Sum_probs=49.1
Q ss_pred cEEEEEeCCCCcchH-HHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccH
Q 009559 175 VKAAIVTCGGLCPGL-NDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTV 253 (532)
Q Consensus 175 ~kiaIvt~GG~cPGl-NavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~ 253 (532)
-+||||...+.+++. -..+...+..|+..|.+ |.-..+=++ .. |-+=||- ....
T Consensus 44 D~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~-v~~~~~~~~------------------~~----~~~agtd--~~Ra 98 (371)
T 3tla_A 44 DTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFK-LVSGKLTGK------------------TD----FYRSGTI--KERA 98 (371)
T ss_dssp CEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCE-EEECTTTTC------------------CB----TTBSSCH--HHHH
T ss_pred CEEEEEeCCCCccccCHHHHHHHHHHHHhCCCE-EEECCchhc------------------cc----CccCCCH--HHHH
Confidence 479999988877664 34566667778889984 431111000 00 1111110 1124
Q ss_pred HHHHHHHHHhCCcEEEE-eCChhhHHHHHHH
Q 009559 254 SEIVDSMEERGINMLFV-LGGNGTHAGANAI 283 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~v-IGGdGT~~gA~~L 283 (532)
+++.+.+..-+|+++++ +||+|+.+-.-.|
T Consensus 99 ~dL~~af~Dp~i~aI~~~rGGyga~rlLp~L 129 (371)
T 3tla_A 99 QEFNELVYNPDITCIMSTIGGDNSNSLLPFL 129 (371)
T ss_dssp HHHHHHHTCTTEEEEEESCCCSCGGGGGGGS
T ss_pred HHHHHHhhCCCCCEEEEccccccHHHHHhhc
Confidence 55666777778888776 7888888766655
No 174
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=23.34 E-value=1.3e+02 Score=25.44 Aligned_cols=58 Identities=14% Similarity=0.063 Sum_probs=0.0
Q ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCc-eEEEEcccccccccCCceeecCCHHH
Q 009559 173 EEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVK-NIVGIPFGYRGFCDKELTEMPLSRKV 232 (532)
Q Consensus 173 ~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~-~V~Gi~~Gy~GL~~~~~~~i~Lt~~~ 232 (532)
+++||.+++++|-..++ ++..+-..+..+|++ ++.+...+-.-=.-.+++.+-|.|+.
T Consensus 5 ~~mkIlL~C~aGmSTsl--lv~km~~~a~~~gi~v~i~a~~~~~~~~~~~~~DvvLLgPQV 63 (108)
T 3nbm_A 5 KELKVLVLCAGSGTSAQ--LANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQV 63 (108)
T ss_dssp CCEEEEEEESSSSHHHH--HHHHHHHHHHHHTCSEEEEEEETTSCTTTGGGCSEEEECGGG
T ss_pred cCceEEEECCCCCCHHH--HHHHHHHHHHHCCCceEEEEcchHHHHhhccCCCEEEEChHH
No 175
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=23.12 E-value=3.1e+02 Score=26.21 Aligned_cols=91 Identities=18% Similarity=0.254 Sum_probs=57.1
Q ss_pred CCCCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceE-EEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccC
Q 009559 171 KPEEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNI-VGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRG 249 (532)
Q Consensus 171 ~p~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V-~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~ 249 (532)
.+..-++-+.|.+|+.=-+-.-+-+. .+..+|++-+ +|. .++ ..+.++......=.++|.|=.
T Consensus 120 ~~~~~~vlla~~~gd~HdiG~~iva~--~L~~~G~~Vi~LG~-------------~vp-~e~l~~~~~~~~~d~V~lS~l 183 (258)
T 2i2x_B 120 PKTKGTVVCHVAEGDVHDIGKNIVTA--LLRANGYNVVDLGR-------------DVP-AEEVLAAVQKEKPIMLTGTAL 183 (258)
T ss_dssp CCCSCEEEEEECTTCCCCHHHHHHHH--HHHHTTCEEEEEEE-------------ECC-SHHHHHHHHHHCCSEEEEECC
T ss_pred cCCCCeEEEEeCCCCccHHHHHHHHH--HHHHCCCEEEECCC-------------CCC-HHHHHHHHHHcCCCEEEEEee
Confidence 35567899999999984433322222 2467888422 332 111 233445555555566665542
Q ss_pred ----CccHHHHHHHHHHhCCcEEEEeCChhhH
Q 009559 250 ----APTVSEIVDSMEERGINMLFVLGGNGTH 277 (532)
Q Consensus 250 ----~~~~~~ivd~L~~~gId~L~vIGGdGT~ 277 (532)
.....++++.|++.+.+.-+++||-..-
T Consensus 184 ~~~~~~~~~~~i~~l~~~~~~~~v~vGG~~~~ 215 (258)
T 2i2x_B 184 MTTTMYAFKEVNDMLLENGIKIPFACGGGAVN 215 (258)
T ss_dssp CTTTTTHHHHHHHHHHTTTCCCCEEEESTTCC
T ss_pred ccCCHHHHHHHHHHHHhcCCCCcEEEECccCC
Confidence 2357889999999999999999997754
No 176
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=23.10 E-value=2.4e+02 Score=26.02 Aligned_cols=50 Identities=20% Similarity=0.298 Sum_probs=38.5
Q ss_pred ccHHHHHHHHHHhCCcEEEEeCC----hhhHHHHHHHHHHHHhcCCCceEeeee
Q 009559 251 PTVSEIVDSMEERGINMLFVLGG----NGTHAGANAIHNECRKRRMKVAVVGVP 300 (532)
Q Consensus 251 ~~~~~ivd~L~~~gId~L~vIGG----dGT~~gA~~L~ee~~kr~~~I~VIGIP 300 (532)
.+.+++++.+++.|++++=+.+. +-+-..+..+.+.+++.|+.+..++.+
T Consensus 30 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~ 83 (257)
T 3lmz_A 30 FDLDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPI 83 (257)
T ss_dssp SCHHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCHHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecc
Confidence 36889999999999999987765 224455677878888888887777665
No 177
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=23.05 E-value=1.3e+02 Score=28.03 Aligned_cols=122 Identities=8% Similarity=0.168 Sum_probs=0.0
Q ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCcc
Q 009559 173 EEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPT 252 (532)
Q Consensus 173 ~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~ 252 (532)
+..+||+++.. .-|-...++.++...+..+|+ ++. +.-+......
T Consensus 7 ~~~~Igvi~~~-~~~~~~~~~~gi~~~~~~~g~-~~~---------------------------------~~~~~~~~~~ 51 (288)
T 2qu7_A 7 RSNIIAFIVPD-QNPFFTEVLTEISHECQKHHL-HVA---------------------------------VASSEENEDK 51 (288)
T ss_dssp CEEEEEEEESS-CCHHHHHHHHHHHHHHGGGTC-EEE---------------------------------EEECTTCHHH
T ss_pred CCCEEEEEECC-CCchHHHHHHHHHHHHHHCCC-EEE---------------------------------EEeCCCCHHH
Q ss_pred HHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHHHHH
Q 009559 253 VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYI 332 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~a~~ 332 (532)
..++++.|...++|++++.+.+.+-.....+ . +++||.+-..++++ ...--++-...+...+++.+...
T Consensus 52 ~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l-~-------~iPvV~~~~~~~~~-~~~~V~~d~~~~g~~a~~~L~~~-- 120 (288)
T 2qu7_A 52 QQDLIETFVSQNVSAIILVPVKSKFQMKREW-L-------KIPIMTLDRELEST-SLPSITVDNEEAAYIATKRVLES-- 120 (288)
T ss_dssp HHHHHHHHHHTTEEEEEECCSSSCCCCCGGG-G-------GSCEEEESCCCSSC-CCCEEEECHHHHHHHHHHHHHTS--
T ss_pred HHHHHHHHHHcCccEEEEecCCCChHHHHHh-c-------CCCEEEEecccCCC-CCCEEEECcHHHHHHHHHHHHHc--
Q ss_pred hhhhccccEEEE
Q 009559 333 EAHSAYHGIGIV 344 (532)
Q Consensus 333 eA~S~~~~V~vV 344 (532)
-+++|+++
T Consensus 121 ----G~~~I~~i 128 (288)
T 2qu7_A 121 ----TCKEVGLL 128 (288)
T ss_dssp ----SCCCEEEE
T ss_pred ----CCCcEEEE
No 178
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=22.79 E-value=64 Score=30.25 Aligned_cols=91 Identities=16% Similarity=0.304 Sum_probs=56.3
Q ss_pred cCCCCcEEEEEeCC-CCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceeccc
Q 009559 170 FKPEEVKAAIVTCG-GLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSR 248 (532)
Q Consensus 170 f~p~~~kiaIvt~G-G~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR 248 (532)
++..+.+++|++.| -|-|-+ ..+...|..+|+. | + +. +.+--|
T Consensus 3 ~~~~~~~V~IimgS~SD~~v~----~~a~~~L~~~gi~--~------------e---v~---------------V~SaHR 46 (174)
T 3lp6_A 3 PAGERPRVGVIMGSDSDWPVM----ADAAAALAEFDIP--A------------E---VR---------------VVSAHR 46 (174)
T ss_dssp ---CCCSEEEEESCGGGHHHH----HHHHHHHHHTTCC--E------------E---EE---------------ECCTTT
T ss_pred CCCCCCeEEEEECcHHhHHHH----HHHHHHHHHcCCC--E------------E---EE---------------EECCCC
Confidence 45566789998754 244544 4566667788874 1 1 11 222335
Q ss_pred CCccHHHHHHHHHHhCCcEEEEe-CChhhHHHHHHHHHHHHhcCCCceEeeeeccc
Q 009559 249 GAPTVSEIVDSMEERGINMLFVL-GGNGTHAGANAIHNECRKRRMKVAVVGVPKTI 303 (532)
Q Consensus 249 ~~~~~~~ivd~L~~~gId~L~vI-GGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTI 303 (532)
......+++++.++.+++.++.+ |+.+.+-+...=. ...+|||||-..
T Consensus 47 ~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~-------t~~PVIgVP~~~ 95 (174)
T 3lp6_A 47 TPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMVAAA-------TPLPVIGVPVPL 95 (174)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHHHHH-------CSSCEEEEEECC
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHHHhc-------cCCCEEEeeCCC
Confidence 56677888999999999977665 4555555543221 468999999653
No 179
>2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis}
Probab=22.42 E-value=2e+02 Score=26.74 Aligned_cols=42 Identities=19% Similarity=0.295 Sum_probs=33.1
Q ss_pred ChhhHHHHHHHHHHHHHHhhhhccccEEEEEecCCCc-cHHHHHHhH
Q 009559 315 GFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSS-GYIAMHASL 360 (532)
Q Consensus 315 GFdTAv~~a~~aI~~a~~eA~S~~~~V~vVevMGR~s-G~LA~~aaL 360 (532)
-|.++++-+.++++.+...+.. .++| =+||-++ |+||+..++
T Consensus 73 ~~p~~~~D~~~al~~l~~~~~~-~~~i---~l~G~SaGG~lA~~~a~ 115 (274)
T 2qru_A 73 KIDHILRTLTETFQLLNEEIIQ-NQSF---GLCGRSAGGYLMLQLTK 115 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTT-TCCE---EEEEETHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhcccc-CCcE---EEEEECHHHHHHHHHHH
Confidence 7899999999999998776643 3444 4788888 689998887
No 180
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=22.36 E-value=4.6e+02 Score=24.16 Aligned_cols=126 Identities=6% Similarity=0.010 Sum_probs=70.7
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC-cc
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA-PT 252 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~-~~ 252 (532)
..+||++...-.-|-...++.++-..+..+|+. +.-. .+... ..
T Consensus 20 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~-~~~~----------------------------------~~~~~~~~ 64 (293)
T 2iks_A 20 TRSIGLVIPDLENTSYTRIANYLERQARQRGYQ-LLIA----------------------------------CSEDQPDN 64 (293)
T ss_dssp CCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCE-EEEE----------------------------------ECTTCHHH
T ss_pred CcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCE-EEEE----------------------------------cCCCCHHH
Confidence 457999988777788888999998888888873 3210 00001 11
Q ss_pred HHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCC-ccCChhhHHHHHHHHHHHHH
Q 009559 253 VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMD-KTFGFDTAVEEAQRAINSAY 331 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD-~SfGFdTAv~~a~~aI~~a~ 331 (532)
..++++.|...++|++++.+.+.+.. .+.+.+++ .+++||.+ |.+.+..+ .++++|-. ..+..+.+.+.
T Consensus 65 ~~~~~~~l~~~~vdgii~~~~~~~~~---~~~~~~~~--~~iPvV~~----~~~~~~~~~~~V~~d~~-~~~~~a~~~L~ 134 (293)
T 2iks_A 65 EMRCIEHLLQRQVDAIIVSTSLPPEH---PFYQRWAN--DPFPIVAL----DRALDREHFTSVVGADQ-DDAEMLAEELR 134 (293)
T ss_dssp HHHHHHHHHHTTCSEEEECCSSCTTC---HHHHTTTT--SSSCEEEE----ESCCCTTTCEEEEECHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCcH---HHHHHHHh--CCCCEEEE----CCccCcCCCCEEEecCH-HHHHHHHHHHH
Confidence 23567788889999999998765421 12233333 35677765 33332211 24555432 11222223222
Q ss_pred HhhhhccccEEEEEec
Q 009559 332 IEAHSAYHGIGIVKLM 347 (532)
Q Consensus 332 ~eA~S~~~~V~vVevM 347 (532)
. .. +++|+++--.
T Consensus 135 ~--~G-~~~I~~i~~~ 147 (293)
T 2iks_A 135 K--FP-AETVLYLGAL 147 (293)
T ss_dssp T--SC-CSSEEEEEEC
T ss_pred H--CC-CCEEEEEecC
Confidence 1 12 5678877543
No 181
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=22.03 E-value=85 Score=31.58 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=22.5
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHHcCCc
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVK 206 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~ 206 (532)
+||||-+.+.++ .+.+...+..|+..|++
T Consensus 19 ~I~ivaPSs~~~--~~~~~~~~~~L~~~G~~ 47 (311)
T 1zl0_A 19 RVALIAPASAIA--TDVLEATLRQLEVHGVD 47 (311)
T ss_dssp EEEEECCSBCCC--HHHHHHHHHHHHHTTCC
T ss_pred EEEEEeCCCCCC--HHHHHHHHHHHHhCCCE
Confidence 599998877776 55667777778889984
No 182
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=21.85 E-value=79 Score=29.40 Aligned_cols=49 Identities=24% Similarity=0.474 Sum_probs=33.0
Q ss_pred cCCccHHHHHHHHHHhCCcEEEEe-CChhhHHHHHHHHHHHHhcCCCceEeeeeccc
Q 009559 248 RGAPTVSEIVDSMEERGINMLFVL-GGNGTHAGANAIHNECRKRRMKVAVVGVPKTI 303 (532)
Q Consensus 248 R~~~~~~~ivd~L~~~gId~L~vI-GGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTI 303 (532)
|......++++.+++.+++.++.+ |+.+.+-+... - ....+|||||-..
T Consensus 44 Rtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--~-----~t~~PVIgVP~~~ 93 (166)
T 3oow_A 44 RTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVA--A-----KTTLPVLGVPVKS 93 (166)
T ss_dssp TCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHH--H-----TCSSCEEEEECCC
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHHHH--h-----ccCCCEEEeecCc
Confidence 455566777788888889877766 45555555432 1 2468999999643
No 183
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=21.41 E-value=1.8e+02 Score=27.66 Aligned_cols=87 Identities=15% Similarity=0.140 Sum_probs=48.1
Q ss_pred cEEEEEeCC-CCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccH
Q 009559 175 VKAAIVTCG-GLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTV 253 (532)
Q Consensus 175 ~kiaIvt~G-G~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~ 253 (532)
|||++++.. -+.-|.-..+..+++.|.+.|+ +|.-+.....+-...++....+... + .....+.....
T Consensus 1 MkIl~i~~~~~~~gG~~~~~~~l~~~L~~~G~-~V~v~~~~~~~~~~~~~~v~~~~~~--------~--~~~~~~~~~~~ 69 (374)
T 2iw1_A 1 MIVAFCLYKYFPFGGLQRDFMRIASTVAARGH-HVRVYTQSWEGDCPKAFELIQVPVK--------S--HTNHGRNAEYY 69 (374)
T ss_dssp -CEEEECSEECTTCHHHHHHHHHHHHHHHTTC-CEEEEESEECSCCCTTCEEEECCCC--------C--SSHHHHHHHHH
T ss_pred CeEEEEEeecCCCcchhhHHHHHHHHHHhCCC-eEEEEecCCCCCCCCCcEEEEEccC--------c--ccchhhHHHHH
Confidence 688888765 3456888899999999988887 4655554443333333221111100 0 00000101123
Q ss_pred HHHHHHHHHhCCcEEEEeC
Q 009559 254 SEIVDSMEERGINMLFVLG 272 (532)
Q Consensus 254 ~~ivd~L~~~gId~L~vIG 272 (532)
..+.+.+++.+.|.+++.+
T Consensus 70 ~~l~~~i~~~~~Dvv~~~~ 88 (374)
T 2iw1_A 70 AWVQNHLKEHPADRVVGFN 88 (374)
T ss_dssp HHHHHHHHHSCCSEEEESS
T ss_pred HHHHHHHhccCCCEEEEec
Confidence 4566777888888888654
No 184
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A
Probab=21.14 E-value=3.2e+02 Score=23.12 Aligned_cols=93 Identities=9% Similarity=0.051 Sum_probs=52.6
Q ss_pred HHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHHHHHHHHHHHHHhhh
Q 009559 256 IVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAH 335 (532)
Q Consensus 256 ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~~a~~aI~~a~~eA~ 335 (532)
=++.|+++||..++-+-.+.-.... .+.+++. ++..+.+|-. |++.+..+.+ .+...++++.+. +
T Consensus 25 d~~~L~~~gi~~Vi~l~~~~e~~~~---~~~~~~~--gi~~~~ipi~-d~~~~~~~~~------~~~~~~~~~~i~-~-- 89 (151)
T 1xri_A 25 NFSFLQTLGLRSIIYLCPEPYPESN---LQFLKSN--GIRLFQFGIE-GNKEPFVNIP------DHKIRMALKVLL-D-- 89 (151)
T ss_dssp HHHHHHHHTCSEEEECCSSCCCHHH---HHHHHHH--TCEEEECCCC-CCCGGGCCCC------HHHHHHHHHHHH-C--
T ss_pred CHHHHHHCCCCEEEECCCCCcChhH---HHHHHhc--CCeEEecccc-cccCccccCC------HHHHHHHHHHHH-c--
Confidence 3578899999999999877643321 2223333 4778888843 3333332221 122333344332 1
Q ss_pred hccccEEEEEecCC-CccHHHHHHhHhcC
Q 009559 336 SAYHGIGIVKLMGR-SSGYIAMHASLASG 363 (532)
Q Consensus 336 S~~~~V~vVevMGR-~sG~LA~~aaLAsg 363 (532)
.....|.|--..|. .+|.+++..-...|
T Consensus 90 ~~~~~vlvHC~aG~~RTg~~~a~~l~~~g 118 (151)
T 1xri_A 90 EKNHPVLIHCKRGKHRTGCLVGCLRKLQK 118 (151)
T ss_dssp GGGCSEEEECSSSSSHHHHHHHHHHHHTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHhC
Confidence 12346888888996 78888755433333
No 185
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=20.97 E-value=87 Score=29.40 Aligned_cols=95 Identities=16% Similarity=0.256 Sum_probs=47.0
Q ss_pred ccccCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceec
Q 009559 167 EIYFKPEEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGV 246 (532)
Q Consensus 167 ~i~f~p~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGT 246 (532)
++||.+...+|+|+-.|+-- +..+++.+...|.. +. .++.+.
T Consensus 17 ~~~~~~~~~~I~iiD~g~~~------~~~i~~~l~~~G~~-~~---------------vv~~~~---------------- 58 (218)
T 2vpi_A 17 NLYFQSMEGAVVILDAGAQY------GKVIDRRVRELFVQ-SE---------------IFPLET---------------- 58 (218)
T ss_dssp ------CTTCEEEEECSTTT------THHHHHHHHHTTCC-EE---------------EECTTC----------------
T ss_pred eEEEEecCCeEEEEECCCch------HHHHHHHHHHCCCE-EE---------------EEECCC----------------
Confidence 46777777799999877643 23466666667763 22 122111
Q ss_pred ccCCccHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhhHHH
Q 009559 247 SRGAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVE 321 (532)
Q Consensus 247 SR~~~~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdTAv~ 321 (532)
+. +.++..++|+|++-||-++... +. ...+ ++.-+++++|..--|.|++-...
T Consensus 59 -----~~----~~l~~~~~dglil~Gg~~~~~~-----~~--~~~~------~~~~~~~~~PilGIC~G~Qll~~ 111 (218)
T 2vpi_A 59 -----PA----FAIKEQGFRAIIISGGPNSVYA-----ED--APWF------DPAIFTIGKPVLGICYGMQMMNK 111 (218)
T ss_dssp -----CH----HHHHHHTCSEEEEEC----------------CCCC------CGGGGTSSCCEEEETHHHHHHHH
T ss_pred -----Ch----HHHhhcCCCEEEECCCCccccc-----cc--chhH------HHHHHHcCCCEEEEcHHHHHHHH
Confidence 11 2233468999999999764321 10 1111 22335677777777999987544
No 186
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=20.95 E-value=4.9e+02 Score=23.86 Aligned_cols=120 Identities=16% Similarity=0.122 Sum_probs=58.1
Q ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCcc
Q 009559 173 EEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPT 252 (532)
Q Consensus 173 ~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~ 252 (532)
+.+++.-....++..-+-. .++.+.+.|+ +.+++.- ..|.+-.+ +....+.+..+...-+..+..-=.-.+
T Consensus 9 ~~~~i~p~i~a~d~~~~~~----~i~~~~~~G~-d~i~l~~-~dg~f~~~---~~~~~~~i~~l~~~~~~~~~v~l~vnd 79 (230)
T 1rpx_A 9 SDIIVSPSILSANFSKLGE----QVKAIEQAGC-DWIHVDV-MDGRFVPN---ITIGPLVVDSLRPITDLPLDVHLMIVE 79 (230)
T ss_dssp TSCEEEEBGGGSCGGGHHH----HHHHHHHTTC-CCEEEEE-EBSSSSSC---BCCCHHHHHHHGGGCCSCEEEEEESSS
T ss_pred CceEEEEEeecCCHHHHHH----HHHHHHHCCC-CEEEEee-ccCCcccc---cccCHHHHHHHHhccCCcEEEEEEecC
Confidence 4456644444556443433 3444556787 3555532 11222111 223466777766542211111001123
Q ss_pred HHHHHHHHHHhCCcEEEEeCCh-hhHHHHHHHHHHHHhcCCCceEeeeecc
Q 009559 253 VSEIVDSMEERGINMLFVLGGN-GTHAGANAIHNECRKRRMKVAVVGVPKT 302 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGd-GT~~gA~~L~ee~~kr~~~I~VIGIPKT 302 (532)
.++.++.+.+.|.|++.+=+.. .+ .....+.+.+++.+.++-+...|.|
T Consensus 80 ~~~~v~~~~~~Gad~v~vh~~~~~~-~~~~~~~~~~~~~g~~ig~~~~p~t 129 (230)
T 1rpx_A 80 PDQRVPDFIKAGADIVSVHCEQSST-IHLHRTINQIKSLGAKAGVVLNPGT 129 (230)
T ss_dssp HHHHHHHHHHTTCSEEEEECSTTTC-SCHHHHHHHHHHTTSEEEEEECTTC
T ss_pred HHHHHHHHHHcCCCEEEEEecCccc-hhHHHHHHHHHHcCCcEEEEeCCCC
Confidence 5567888888999999555440 22 1223445566666655444444444
No 187
>3oaa_G ATP synthase gamma chain; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1}
Probab=20.79 E-value=4e+02 Score=26.22 Aligned_cols=17 Identities=35% Similarity=0.813 Sum_probs=11.8
Q ss_pred CCcchHHHHH-HHHHHHH
Q 009559 184 GLCPGLNDVI-RHIVITL 200 (532)
Q Consensus 184 G~cPGlNavI-r~iv~~l 200 (532)
|+|.|.|+-| +.+...+
T Consensus 85 GLcG~fN~ni~k~~~~~i 102 (286)
T 3oaa_G 85 GLCGGLNINLFKKLLAEM 102 (286)
T ss_dssp CCSTTHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHH
Confidence 9999999955 4444333
No 188
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=20.68 E-value=3.8e+02 Score=26.74 Aligned_cols=162 Identities=15% Similarity=0.103 Sum_probs=82.1
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC-----
Q 009559 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA----- 250 (532)
Q Consensus 176 kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~----- 250 (532)
-+.=+||.+-.. ..|++.+..+...|+++|+.+++-...--++.+ .-..+.|+.|...++-.+|..-.+
T Consensus 85 ~v~Hltc~~~~~---~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~---~~A~dLv~~ir~~~~f~IgvA~yPE~Hp~ 158 (304)
T 3fst_A 85 AAPHLTCIDATP---DELRTIARDYWNNGIRHIVALRGDLPPGSGKPE---MYASDLVTLLKEVADFDISVAAYPEVHPE 158 (304)
T ss_dssp EEEEEESTTSCH---HHHHHHHHHHHHTTCCEEEEECCCCC------C---CCHHHHHHHHHHHCCCEEEEEECTTCCTT
T ss_pred eeEEeecCCCCH---HHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCC---CCHHHHHHHHHHcCCCeEEEEeCCCcCCC
Confidence 345577765321 356677777778999999988754432211111 113345555555555445543211
Q ss_pred -c-----------------------------cHHHHHHHHHHhCCcEEEEeC--ChhhHHHHHHHHHHHHhcCCCceEee
Q 009559 251 -P-----------------------------TVSEIVDSMEERGINMLFVLG--GNGTHAGANAIHNECRKRRMKVAVVG 298 (532)
Q Consensus 251 -~-----------------------------~~~~ivd~L~~~gId~L~vIG--GdGT~~gA~~L~ee~~kr~~~I~VIG 298 (532)
+ .+.+.++.+++.||+.=++.| .=.|.+.+..+++. +=+.
T Consensus 159 a~~~~~d~~~Lk~KvdAGAdf~iTQ~ffD~~~~~~f~~~~r~~Gi~vPIi~GImPi~s~~~~~~~~~~--------~Gv~ 230 (304)
T 3fst_A 159 AKSAQADLLNLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKLADM--------TNVR 230 (304)
T ss_dssp CSCHHHHHHHHHHHHHHTCCEEEECCCSCHHHHHHHHHHHHHTTCCSCEECEECCCSCHHHHHHHHHH--------HTCC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCccCCHHHHHHHHHHHHhcCCCCcEEEEecccCCHHHHHHHHHc--------CCCc
Confidence 0 123456666777766333333 44566666666532 2344
Q ss_pred eecccccCCCCCCccC--ChhhHHHHHHHHHHHHHHhhhhccccEEEEEecCCCccHHH
Q 009559 299 VPKTIDNDILLMDKTF--GFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIA 355 (532)
Q Consensus 299 IPKTIDNDI~~tD~Sf--GFdTAv~~a~~aI~~a~~eA~S~~~~V~vVevMGR~sG~LA 355 (532)
||..+-+-+...+.-. ...-.++.+++.|..+... . ..++.|. +|+|.---..
T Consensus 231 iP~~l~~~l~~~~dd~~~~~~~Gi~~a~e~~~~L~~~--g-v~GiH~y-t~n~~~~~~~ 285 (304)
T 3fst_A 231 IPAWMAQMFDGLDDDAETRKLVGANIAMDMVKILSRE--G-VKDFHFY-TLNRAEMSYA 285 (304)
T ss_dssp CCHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHHHHHT--T-CCEEEEE-CTTCCHHHHH
T ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHC--C-CCEEEEC-CCCCHHHHHH
Confidence 6766665553322110 0223345555555555431 2 3577777 6888654333
No 189
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=20.67 E-value=5.1e+02 Score=24.53 Aligned_cols=117 Identities=11% Similarity=0.084 Sum_probs=66.3
Q ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC-cc
Q 009559 174 EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA-PT 252 (532)
Q Consensus 174 ~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~-~~ 252 (532)
..+||+++..-.-|-...++.++-..+..+|+. +.-+ . +... ..
T Consensus 60 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~-~~~~--------~--------------------------~~~~~~~ 104 (330)
T 3ctp_A 60 SKTIGLMVPNISNPFFNQMASVIEEYAKNKGYT-LFLC--------N--------------------------TDDDKEK 104 (330)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE-EEEE--------E--------------------------CTTCHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHCCCE-EEEE--------e--------------------------CCCChHH
Confidence 457999987666777788888888888888773 3210 0 0001 11
Q ss_pred HHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeeeecccccCCCCCCccCChhh--HHHHHHHHHHHH
Q 009559 253 VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDT--AVEEAQRAINSA 330 (532)
Q Consensus 253 ~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGIPKTIDNDI~~tD~SfGFdT--Av~~a~~aI~~a 330 (532)
..++++.|...++|+++ .+.+.+. +.+.+ .+++||.+=..+++ .. .++++|- +...+++.+..
T Consensus 105 ~~~~~~~l~~~~vdgiI-~~~~~~~-------~~l~~--~~iPvV~~~~~~~~---~~-~~V~~D~~~~~~~a~~~L~~- 169 (330)
T 3ctp_A 105 EKTYLEVLQSHRVAGII-ASRSQCE-------DEYAN--IDIPVVAFENHILD---NI-ITISSDNYNGGRMAFDHLYE- 169 (330)
T ss_dssp HHHHHHHHHHTTCSEEE-EETCCCS-------GGGTT--CCSCEEEESSCCCT---TS-CEEEECHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCCCEEE-ECCCCCH-------HHHHh--cCCCEEEEeccCCC---CC-CEEEeCHHHHHHHHHHHHHH-
Confidence 23567778889999999 8866542 11222 35777765333221 11 2455442 33333333322
Q ss_pred HHhhhhccccEEEEE
Q 009559 331 YIEAHSAYHGIGIVK 345 (532)
Q Consensus 331 ~~eA~S~~~~V~vVe 345 (532)
.. +++|+++-
T Consensus 170 ----~G-~~~I~~i~ 179 (330)
T 3ctp_A 170 ----KG-CRKILHIK 179 (330)
T ss_dssp ----TT-CCSEEEEE
T ss_pred ----CC-CCeEEEEe
Confidence 13 56787774
No 190
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=20.65 E-value=2.5e+02 Score=24.97 Aligned_cols=98 Identities=17% Similarity=0.147 Sum_probs=63.4
Q ss_pred CHHHHhhhhhcCC---cceecccCCccHHHHHHHHHHhCCcEEEEeCChh-hHHHHHHHHHHHHhcCC---CceEeeeec
Q 009559 229 SRKVVQNIHLSGG---SLLGVSRGAPTVSEIVDSMEERGINMLFVLGGNG-THAGANAIHNECRKRRM---KVAVVGVPK 301 (532)
Q Consensus 229 t~~~V~~i~~~GG---SiLGTSR~~~~~~~ivd~L~~~gId~L~vIGGdG-T~~gA~~L~ee~~kr~~---~I~VIGIPK 301 (532)
-...+..+....| ..||.. ...+++++.+++.+.+.+.+-.=.+ ++..+..+.+.+++.+. +|-|-|.|-
T Consensus 34 G~~~va~~l~~~G~eVi~lG~~---~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~~g~~~i~v~vGG~~~ 110 (161)
T 2yxb_A 34 GAKVVARALRDAGFEVVYTGLR---QTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELGADDIPVVLGGTIP 110 (161)
T ss_dssp HHHHHHHHHHHTTCEEECCCSB---CCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTTCTTSCEEEEECCC
T ss_pred HHHHHHHHHHHCCCEEEECCCC---CCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHhcCCCCCEEEEeCCCc
Confidence 3456666666666 345654 3578999999999999998887644 45667778888888764 344556554
Q ss_pred ccccC---CCCCCccCChhh----HHHHHHHHHHH
Q 009559 302 TIDND---ILLMDKTFGFDT----AVEEAQRAINS 329 (532)
Q Consensus 302 TIDND---I~~tD~SfGFdT----Av~~a~~aI~~ 329 (532)
+-|=+ -.+.|.-|+-+| |++.+.+.+..
T Consensus 111 ~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~ 145 (161)
T 2yxb_A 111 IPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEE 145 (161)
T ss_dssp HHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHH
T ss_pred hhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHH
Confidence 43321 256775454444 66666666654
No 191
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=20.48 E-value=1.7e+02 Score=25.40 Aligned_cols=86 Identities=16% Similarity=0.179 Sum_probs=0.0
Q ss_pred CCCcEEEEEeCCCCcchHHHHHHHHHHHH-HHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCC
Q 009559 172 PEEVKAAIVTCGGLCPGLNDVIRHIVITL-EIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGA 250 (532)
Q Consensus 172 p~~~kiaIvt~GG~cPGlNavIr~iv~~l-~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~ 250 (532)
..+.|+.+.|.||+ .++.=.-++..+ ...|+ +|+ ++-.-.-.++.++......-.+++.|-..
T Consensus 1 ~~~~~vvla~~~~d---~HdiG~~~v~~~l~~~G~-~Vi------------~lG~~~p~e~~v~~a~~~~~d~v~lS~~~ 64 (137)
T 1ccw_A 1 MEKKTIVLGVIGSD---CHAVGNKILDHAFTNAGF-NVV------------NIGVLSPQELFIKAAIETKADAILVSSLY 64 (137)
T ss_dssp CCCCEEEEEEETTC---CCCHHHHHHHHHHHHTTC-EEE------------EEEEEECHHHHHHHHHHHTCSEEEEEECS
T ss_pred CCCCEEEEEeCCCc---hhHHHHHHHHHHHHHCCC-EEE------------ECCCCCCHHHHHHHHHhcCCCEEEEEecC
Q ss_pred c----cHHHHHHHHHHhCC-cEEEEeCC
Q 009559 251 P----TVSEIVDSMEERGI-NMLFVLGG 273 (532)
Q Consensus 251 ~----~~~~ivd~L~~~gI-d~L~vIGG 273 (532)
. ...++++.|++.+. +..+++||
T Consensus 65 ~~~~~~~~~~i~~l~~~g~~~i~v~vGG 92 (137)
T 1ccw_A 65 GQGEIDCKGLRQKCDEAGLEGILLYVGG 92 (137)
T ss_dssp STHHHHHTTHHHHHHHTTCTTCEEEEEE
T ss_pred cCcHHHHHHHHHHHHhcCCCCCEEEEEC
No 192
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=20.43 E-value=5.3e+02 Score=24.14 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=44.5
Q ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCc-
Q 009559 173 EEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP- 251 (532)
Q Consensus 173 ~~~kiaIvt~GG~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~- 251 (532)
+..+|||+. .=.-|-...+++++...+..+|+.. | .++. + ++..+.+.+
T Consensus 7 ~t~~IGvi~-~~~~p~~~~~~~gi~~~l~~~Gy~~------g------~~v~-l----------------~~~~~~~~~~ 56 (302)
T 2qh8_A 7 KTAKVAVSQ-IVEHPALDATRQGLLDGLKAKGYEE------G------KNLE-F----------------DYKTAQGNPA 56 (302)
T ss_dssp CCEEEEEEE-SSCCHHHHHHHHHHHHHHHHTTCCB------T------TTEE-E----------------EEEECTTCHH
T ss_pred CCcEEEEEE-eccChhHHHHHHHHHHHHHHcCCCC------C------CceE-E----------------EEecCCCCHH
Confidence 346789884 4456778889999988888877610 0 0000 0 011111112
Q ss_pred cHHHHHHHHHHhCCcEEEEeCCh
Q 009559 252 TVSEIVDSMEERGINMLFVLGGN 274 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGd 274 (532)
...++++.|.+.++|+++++|.+
T Consensus 57 ~~~~~~~~l~~~~vDgII~~~~~ 79 (302)
T 2qh8_A 57 IAVQIARQFVGENPDVLVGIATP 79 (302)
T ss_dssp HHHHHHHHHHHTCCSEEEEESHH
T ss_pred HHHHHHHHHHhCCCCEEEECChH
Confidence 23467888999999999998743
No 193
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=20.37 E-value=5.6e+02 Score=24.36 Aligned_cols=45 Identities=9% Similarity=0.087 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHHHHHHHHhcCCCceEeee
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGV 299 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~L~ee~~kr~~~I~VIGI 299 (532)
..+.+.+.++++++|.++. +-++....+..+.+.+++.| +++++-
T Consensus 60 ~~~~l~~~~~~~~~d~vi~-~~~~~~~~~a~~~~~l~~~g--~~~~~~ 104 (331)
T 2pn1_A 60 YIDHLLTLCQDEGVTALLT-LIDPELGLLAQATERFQAIG--VTVIVS 104 (331)
T ss_dssp HHHHHHHHHHHHTCCEEEE-SSHHHHHHHHHTHHHHHTTT--CEECCC
T ss_pred HHHHHHHHHHHcCCCEEEe-CCchhHHHHHHHHHHHHhCC--cEEecC
Confidence 4678888899999998776 33433333444555555433 445543
No 194
>1j3k_A Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: c.71.1.1 PDB: 3dg8_A* 1j3j_A* 1j3i_A* 3dga_A*
Probab=20.29 E-value=54 Score=32.78 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=40.7
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHH--HHHHHHhcCCCceEeeeecccccCCCCC
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANA--IHNECRKRRMKVAVVGVPKTIDNDILLM 310 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~--L~ee~~kr~~~I~VIGIPKTIDNDI~~t 310 (532)
+++++++.|++.+..-++||||-..++.+.. +.+ .+-+--||..++-|..+.
T Consensus 145 sl~eal~~lk~~~~~~I~ViGGa~ly~~~L~~glvD-------el~LT~Ip~~lgGD~~FP 198 (280)
T 1j3k_A 145 KVEDLIVLLGKLNYYKCFILGGSVVYQEFLEKKLIK-------KIYFTRINSTYECDVFFP 198 (280)
T ss_dssp SHHHHHHHHHHSCCSCEEECCCHHHHHHHHHTTCCS-------EEEEEEEEEEECCSEECC
T ss_pred CHHHHHHHHHhCCCCcEEEECCHHHHHHHhcCccCC-------EEEEEEeccccCCceeCC
Confidence 6788999999888889999999887776665 332 477888899998777553
No 195
>2bl9_A Dihydrofolate reductase-thymidylate synthase; plamodium vivax, pyrimethamine, malaria, drug resistance, oxidoreductase; HET: NDP CP6; 1.9A {Plasmodium vivax} PDB: 2blb_A* 2blc_A* 2bla_A*
Probab=20.18 E-value=45 Score=32.46 Aligned_cols=52 Identities=8% Similarity=0.218 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHhCCcEEEEeCChhhHHHHHH--HHHHHHhcCCCceEeeeecccccCCCCC
Q 009559 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANA--IHNECRKRRMKVAVVGVPKTIDNDILLM 310 (532)
Q Consensus 252 ~~~~ivd~L~~~gId~L~vIGGdGT~~gA~~--L~ee~~kr~~~I~VIGIPKTIDNDI~~t 310 (532)
+.+++++.|++.+.+-++||||-..++.+.. +.+ .+-+--||..++-|..+.
T Consensus 154 sl~eal~~lk~~~~~~I~ViGGa~Iy~~~L~~glvD-------el~lT~ip~~~gGD~~FP 207 (238)
T 2bl9_A 154 SIDDLLLLLKKLKYYKCFIIGGAQVYRECLSRNLIK-------QIYFTRINGAYPCDVFFP 207 (238)
T ss_dssp CHHHHHHHHHTCCCSCEEEEECHHHHHHHHHTTCCS-------EEEEEEEEEEECCSEECC
T ss_pred CHHHHHHHHHhCCCCCEEEECcHHHHHHHhcccCCC-------EEEEEEeccccCCceeCC
Confidence 6788899998888889999999887776655 332 477888899998887554
No 196
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=20.14 E-value=84 Score=31.80 Aligned_cols=83 Identities=10% Similarity=0.127 Sum_probs=49.6
Q ss_pred EEEEEeCCCCcchH-HHHHHHHHHHHHHcCCceEEEEcccccccccCCceeecCCHHHHhhhhhcCCcceecccCCccHH
Q 009559 176 KAAIVTCGGLCPGL-NDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVS 254 (532)
Q Consensus 176 kiaIvt~GG~cPGl-NavIr~iv~~l~~ygv~~V~Gi~~Gy~GL~~~~~~~i~Lt~~~V~~i~~~GGSiLGTSR~~~~~~ 254 (532)
+||||...+.++.. -..+...+..|+..|.+ |.--.+=+ + .-|-+=||- ....+
T Consensus 14 ~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~-v~~~~~~~------------------~----~~~~~ag~d--~~Ra~ 68 (331)
T 4e5s_A 14 EIRVISPSCSLSIVSTENRRLAVKRLTELGFH-VTFSTHAE------------------E----IDRFASSSI--SSRVQ 68 (331)
T ss_dssp EEEEECSSSCGGGSCHHHHHHHHHHHHHTTCE-EEECTTTT------------------C----CCTTSSCCH--HHHHH
T ss_pred EEEEEeCCCCccccCHHHHHHHHHHHHhCCCE-EEECCchh------------------c----ccCccCCCH--HHHHH
Confidence 69999877776632 35566667778889984 53111100 0 001111111 12346
Q ss_pred HHHHHHHHhCCcEEEE-eCChhhHHHHHHH
Q 009559 255 EIVDSMEERGINMLFV-LGGNGTHAGANAI 283 (532)
Q Consensus 255 ~ivd~L~~~gId~L~v-IGGdGT~~gA~~L 283 (532)
++.+.+..-+|+++++ +||+|+.+-.-.|
T Consensus 69 dL~~a~~Dp~i~aI~~~rGG~g~~rlL~~l 98 (331)
T 4e5s_A 69 DLHEAFRDPNVKAILTTLGGYNSNGLLKYL 98 (331)
T ss_dssp HHHHHHHCTTEEEEEESCCCSCGGGGGGGC
T ss_pred HHHHHhhCCCCCEEEEccccccHHHHHhhc
Confidence 6777788788988766 7999988876665
No 197
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=20.11 E-value=3.8e+02 Score=25.96 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=33.9
Q ss_pred CcEEEEEeCC---CCcchHHHHHHHHHHHHHHcCCceEEEEccccccc
Q 009559 174 EVKAAIVTCG---GLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGF 218 (532)
Q Consensus 174 ~~kiaIvt~G---G~cPGlNavIr~iv~~l~~ygv~~V~Gi~~Gy~GL 218 (532)
.|||++++.. -...|+..++..+.+.|.+.|+ +|.-+...+.+.
T Consensus 2 ~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~-~V~v~~~~~~~~ 48 (439)
T 3fro_A 2 HMKVLLLGFEFLPVKVGGLAEALTAISEALASLGH-EVLVFTPSHGRF 48 (439)
T ss_dssp CCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTC-EEEEEEECTTCS
T ss_pred ceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCC-eEEEEecCCCCc
Confidence 5899999966 3467999999999999999998 566665444443
Done!