RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 009559
(532 letters)
>gnl|CDD|178472 PLN02884, PLN02884, 6-phosphofructokinase.
Length = 411
Score = 880 bits (2276), Expect = 0.0
Identities = 361/411 (87%), Positives = 387/411 (94%)
Query: 122 GYINNNDRVLLKVINFSSPTSAGAECIDRDCTWVEQWVHRAGPREEIYFKPEEVKAAIVT 181
GY+NN+DRVLLKVI +SSPTSAGAECID DC+WVEQWVHRAGPR++IYF+PEEVKAAIVT
Sbjct: 1 GYVNNDDRVLLKVIKYSSPTSAGAECIDPDCSWVEQWVHRAGPRKKIYFEPEEVKAAIVT 60
Query: 182 CGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGG 241
CGGLCPGLNDVIR IV TLEIYGVKNIVGIPFGYRGF +K L+EMPLSRKVVQNIHLSGG
Sbjct: 61 CGGLCPGLNDVIRQIVFTLEIYGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHLSGG 120
Query: 242 SLLGVSRGAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPK 301
SLLGVSRG S+IVDS+E RGINMLFVLGGNGTHAGANAIHNECRKR+MKV+VVGVPK
Sbjct: 121 SLLGVSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPK 180
Query: 302 TIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLA 361
TIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIG+VKLMGRSSG+IAMHASLA
Sbjct: 181 TIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGLVKLMGRSSGFIAMHASLA 240
Query: 362 SGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVVCVAEGAGQSLIKKTNATDASGN 421
SGQ+DICLIPE PF L GPNGVLRHL++LIETKGSAVVCVAEGAGQ L++KTNATDASGN
Sbjct: 241 SGQVDICLIPEVPFTLDGPNGVLRHLEHLIETKGSAVVCVAEGAGQDLLQKTNATDASGN 300
Query: 422 IVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHGA 481
VLGD+GV +QQE KK+FK+IGVP DVKYIDPTYMIRACRANASD ILCTVLGQNAVHGA
Sbjct: 301 PVLGDIGVHLQQEIKKHFKDIGVPADVKYIDPTYMIRACRANASDAILCTVLGQNAVHGA 360
Query: 482 FAGFSGITVGLCNTHYAYFPIPEVISYPRAVDPNSRMWHRCLTSTGQPDFI 532
FAGFSGITVG+CNTHY Y PIPEVI+YPR VDPNSRMWHRCLTSTGQPDF
Sbjct: 361 FAGFSGITVGICNTHYVYLPIPEVIAYPRRVDPNSRMWHRCLTSTGQPDFH 411
>gnl|CDD|235869 PRK06830, PRK06830, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 443
Score = 533 bits (1376), Expect = 0.0
Identities = 204/412 (49%), Positives = 280/412 (67%), Gaps = 9/412 (2%)
Query: 123 YINNNDRVLLKVINFSSPTSAGAECIDRDCTWVEQWVHRAGPREEIYFKPEEVKAAIVTC 182
+++++DRVL V + S A + +AGPRE+IYF P +VKAAIVTC
Sbjct: 36 FVSDSDRVLFDV-SLSLIKEEDAPGTEPPS------FEKAGPREKIYFDPSKVKAAIVTC 88
Query: 183 GGLCPGLNDVIRHIVITL-EIYGVKNIVGIPFGYRGFCDK-ELTEMPLSRKVVQNIHLSG 240
GGLCPGLNDVIR IV+ L YGV+ I+GI +GY+G + + L+ +VV +IH G
Sbjct: 89 GGLCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPEVVADIHEFG 148
Query: 241 GSLLGVSRGAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVP 300
G++LG SRG EIVD++E IN+LFV+GG+GT GA+AI E +R +K++V+G+P
Sbjct: 149 GTILGSSRGPQDPEEIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIP 208
Query: 301 KTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASL 360
KTIDNDI + K+FGF+TAVE+A AI A++EA+ A +GIG+VKLMGR SG+IA +A+L
Sbjct: 209 KTIDNDINFIQKSFGFETAVEKATEAIRCAHVEANGAPNGIGLVKLMGRHSGFIAAYAAL 268
Query: 361 ASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVVCVAEGAGQSLIKKTNATDASG 420
AS ++ LIPE PF+L GPNG+L L+ + +G AV+ VAEGAGQ L T TDASG
Sbjct: 269 ASKDVNFVLIPEVPFDLEGPNGLLAALEKRLAERGHAVIVVAEGAGQELFDDTGETDASG 328
Query: 421 NIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHG 480
N LGD+G+ ++ K+YFK G+PI++KYIDP+Y+IR+ ANA+D + C LGQNAVH
Sbjct: 329 NPKLGDIGLFLKDRIKEYFKARGIPINLKYIDPSYIIRSVPANANDSVYCGFLGQNAVHA 388
Query: 481 AFAGFSGITVGLCNTHYAYFPIPEVISYPRAVDPNSRMWHRCLTSTGQPDFI 532
A AG +G+ VG N + + PI +S + V+P +W L STGQP +
Sbjct: 389 AMAGKTGMVVGRWNNRFVHLPIDLAVSKRKKVNPEGDLWRSVLESTGQPRSM 440
>gnl|CDD|185539 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Provisional.
Length = 459
Score = 505 bits (1303), Expect = e-177
Identities = 200/376 (53%), Positives = 260/376 (69%), Gaps = 9/376 (2%)
Query: 161 RAGPREEIYFKPEEVKAAIVTCGGLCPGLNDVIRHIVITLEI-YGVKNIVGIPFGYRGFC 219
RAGPR+ +YF P+EVKA IVTCGGLCPGLN VIR +V+ L YGVK I G +GY+G
Sbjct: 74 RAGPRKHLYFNPKEVKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAKYGYKGLY 133
Query: 220 DKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEIVDSMEERGINMLFVLGGNGTHAG 279
++ + L K V+ IH GG++LG SRG +VD++ GIN+LF LGG+GTH G
Sbjct: 134 KED--WIKLDPKDVKTIHRLGGTILGSSRGGFDPKVMVDTLIRHGINILFTLGGDGTHRG 191
Query: 280 ANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYH 339
A AI+ E R+R++ ++VVG+PKTIDNDI ++D++FGF TAVEEAQ AI +AY+EA SA +
Sbjct: 192 ALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVEEAQNAIRAAYVEAKSAKN 251
Query: 340 GIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVV 399
G+GIVKLMGR SG+IA+HAS+AS +++CLIPE L GVL +++ ++ KG V+
Sbjct: 252 GVGIVKLMGRDSGFIALHASVASADVNVCLIPEFDIPL---EGVLEYIEQRLQKKGHCVI 308
Query: 400 CVAEGAGQSLIKKTNA--TDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMI 457
VAEGAGQSL TDASGN L D+GV ++ E KY K+ VKYIDP+YMI
Sbjct: 309 VVAEGAGQSLKDADLDLGTDASGNKKLWDIGVYLKDEITKYLKKKKPEHTVKYIDPSYMI 368
Query: 458 RACRANASDGILCTVLGQNAVHGAFAGFSGITVGLCNTHYAYFPIPEVI-SYPRAVDPNS 516
RA ANA+D CT L QNAVHGA AGF+G +G + +Y PI E+ +Y R V+P
Sbjct: 369 RAVPANAADAKFCTQLAQNAVHGAMAGFTGFIIGHVHNNYVMIPIKEMSGNYRRRVNPEG 428
Query: 517 RMWHRCLTSTGQPDFI 532
R+W R L TGQP F+
Sbjct: 429 RLWQRMLAITGQPSFL 444
>gnl|CDD|178178 PLN02564, PLN02564, 6-phosphofructokinase.
Length = 484
Score = 504 bits (1299), Expect = e-176
Identities = 206/378 (54%), Positives = 273/378 (72%), Gaps = 8/378 (2%)
Query: 161 RAGPREEIYFKPEEVKAAIVTCGGLCPGLNDVIRHIVITL-EIYGVKNIVGIPFGYRGFC 219
RAGPR+++YF+ +EV+A IVTCGGLCPGLN VIR IV L +YGV I+GI GYRGF
Sbjct: 74 RAGPRQKVYFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFY 133
Query: 220 DKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEIVDSMEERGINMLFVLGGNGTHAG 279
+ +PL+ KVV +IH GG++LG SRG S+IVDS+++RGIN ++++GG+GT G
Sbjct: 134 SR--NTIPLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKG 191
Query: 280 ANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYH 339
A+ I+ E R+R +KVAV G+PKTIDNDI ++DK+FGFDTAVEEAQRAIN+A++EA S +
Sbjct: 192 ASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESVEN 251
Query: 340 GIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVV 399
GIG+VKLMGR SG+IAM+A+LAS +D CLIPESPF L G G+ ++ ++ G V+
Sbjct: 252 GIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIEKRLKENGHMVI 311
Query: 400 CVAEGAGQSLIKKT----NATDASGNIVLGDVGVLIQQETKKYF-KEIGVPIDVKYIDPT 454
VAEGAGQ LI ++ + DASGN +L DVG+ + Q+ K +F K +PI++KYIDPT
Sbjct: 312 VVAEGAGQDLIAESMESSDLQDASGNKLLLDVGLWLSQKIKDHFTKVKKMPINLKYIDPT 371
Query: 455 YMIRACRANASDGILCTVLGQNAVHGAFAGFSGITVGLCNTHYAYFPIPEVISYPRAVDP 514
YMIRA +NASD + CT+L +AVHGA AG++G TVG N +AY P + V
Sbjct: 372 YMIRAIPSNASDNVYCTLLAHSAVHGAMAGYTGFTVGPVNGRHAYIPFYRITEKQNKVVI 431
Query: 515 NSRMWHRCLTSTGQPDFI 532
RMW R L+ST QP F+
Sbjct: 432 TDRMWARLLSSTNQPSFL 449
>gnl|CDD|223283 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate transport and
metabolism].
Length = 347
Score = 225 bits (575), Expect = 5e-69
Identities = 112/344 (32%), Positives = 178/344 (51%), Gaps = 35/344 (10%)
Query: 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQN 235
K AI+T GG PG+N VIR +V T G++ + GI GY G + ++ PL+R+ V +
Sbjct: 4 KIAILTSGGDAPGMNAVIRAVVRTAIKEGLE-VFGIYNGYLGLLEGDIK--PLTREDVDD 60
Query: 236 IHLSGGSLLGVSRGAPTVSE-----IVDSMEERGINMLFVLGGNGTHAGANAIHNECRKR 290
+ GG+ LG +R +E +++++ GI+ L V+GG+G++ GA + E
Sbjct: 61 LINRGGTFLGSARFPEFKTEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEE---- 116
Query: 291 RMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRS 350
+ VVGVPKTIDNDI D T GFDTA+E A AI++ + S++ I IV++MGR
Sbjct: 117 -GGIPVVGVPKTIDNDISGTDFTIGFDTALETAVEAIDNLR-DTASSHERIFIVEVMGRH 174
Query: 351 SGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKG--SAVVCVAEGAGQS 408
+G++A+ A LA+G DI LIPE P +L ++ +K E +G A++ VAEGA
Sbjct: 175 AGWLALAAGLATG-ADIILIPEEPADLI-IEELIAEIKAKREARGKKHAIIVVAEGAID- 231
Query: 409 LIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGI 468
+G+ G + ++ + + ++ R +A D +
Sbjct: 232 --------------QIGENGAELLAAIEELLALG--DFETRVTVLGHIQRGGTPSAFDRV 275
Query: 469 LCTVLGQNAVHGAFAGFSGITVGLCNTHYAYFPIPEVISYPRAV 512
L + LG AV G +G VG+ N + PI E ++ + V
Sbjct: 276 LASRLGAAAVDLLLEGKTGYMVGIRNNKIVHVPIDEAVAPLKMV 319
>gnl|CDD|233887 TIGR02483, PFK_mixed, phosphofructokinase. Members of this family
that are characterized, save one, are
phosphofructokinases dependent on pyrophosphate (EC
2.7.1.90) rather than ATP (EC 2.7.1.11). The exception
is one of three phosphofructokinases from Streptomyces
coelicolor. Family members are both bacterial and
archaeal [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 324
Score = 178 bits (453), Expect = 1e-51
Identities = 119/347 (34%), Positives = 179/347 (51%), Gaps = 39/347 (11%)
Query: 176 KAAIVTCGGLCPGLNDVIRHIVIT-LEIYGVKNIVGIPFGYRGFCDKELTEMPL-SRKVV 233
+ ++T GG CPGLN VIR +V + YG ++GI G+RG + + +PL + V
Sbjct: 1 RIGVLTGGGDCPGLNAVIRGVVRRAIAEYG-WEVIGIRDGWRGLLEGD--TVPLLDLEDV 57
Query: 234 QNIHLSGGSLLGVSRGAP------TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNEC 287
+ I GG++LG SR P +IV +++E G++ L +GG+GT A
Sbjct: 58 RGILPRGGTILGSSRTNPFKYEEDGDDKIVANLKELGLDALIAIGGDGTLGIAR------ 111
Query: 288 RKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLM 347
R + VVGVPKTIDND+ D TFGFDTAVE A A++ + A S +H + +V++M
Sbjct: 112 RLADKGLPVVGVPKTIDNDLEATDYTFGFDTAVEIATEALDRLHTTAES-HHRVMVVEVM 170
Query: 348 GRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGS-AVVCVAEGA- 405
GR +G+IA+H+ +A G D+ LIPE PF++ + V ++ A+V VAEGA
Sbjct: 171 GRHAGWIALHSGIAGGA-DVILIPEIPFDI---DSVCEKVRERFARGKRFAIVVVAEGAK 226
Query: 406 --GQSLIKKTNATDASGNIVLGDVG----VLIQQETKKYFKEIGVPIDVKYIDPTYMIRA 459
G ++ + DA G++ LG +G I++ T I+ + ++ R
Sbjct: 227 PKGGEMVVQEGVKDAFGHVRLGGIGNWLAEEIERRTG---------IETRATVLGHLQRG 277
Query: 460 CRANASDGILCTVLGQNAVHGAFAGFSGITVGLCNTHYAYFPIPEVI 506
+A D +L T G AV G G V L T Y PI E +
Sbjct: 278 GSPSAFDRVLATRFGVAAVDLVHEGQFGHMVALRGTDIVYVPIAEAV 324
>gnl|CDD|235111 PRK03202, PRK03202, 6-phosphofructokinase; Provisional.
Length = 320
Score = 177 bits (453), Expect = 2e-51
Identities = 100/352 (28%), Positives = 168/352 (47%), Gaps = 52/352 (14%)
Query: 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQN 235
+ ++T GG PG+N IR +V T G++ + GI GY G + ++ + L K V +
Sbjct: 3 RIGVLTSGGDAPGMNAAIRAVVRTAISEGLE-VYGIYDGYAGLLEGDI--VKLDLKSVSD 59
Query: 236 IHLSGGSLLGVSRGAPT-----VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKR 290
I GG++LG +R ++ ++++++ GI+ L V+GG+G++ GA +
Sbjct: 60 IINRGGTILGSARFPEFKDEEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLT------ 113
Query: 291 RMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHG-IGIVKLMGR 349
+ V+G+P TIDNDI D T GFDTA+ A AI+ A S H + IV++MGR
Sbjct: 114 EHGIPVIGLPGTIDNDIAGTDYTIGFDTALNTAVEAIDRLRDTASS--HERVFIVEVMGR 171
Query: 350 SSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIET-KGSAVVCVAEGA--G 406
+G +A+HA +A G ++ LIPE PF++ + +K E K A++ VAEG
Sbjct: 172 HAGDLALHAGIAGGA-EVILIPEVPFDIE---ELCAKIKKGRERGKKHAIIVVAEGVMPA 227
Query: 407 QSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASD 466
+ L K+ I++ T ++ + ++ R A D
Sbjct: 228 EELAKE------------------IEERT---------GLETRVTVLGHIQRGGSPTAFD 260
Query: 467 GILCTVLGQNAVHGAFAGFSGITVGLCNTHYAYFPIPEVISYPRAVDPNSRM 518
+L + +G +AV G G VG+ N + PI E + + +
Sbjct: 261 RVLASRMGAHAVELLLEGKGGRMVGIQNNKIVHVPIEEAVE-NMKHPFDKDL 311
>gnl|CDD|238216 cd00363, PFK, Phosphofructokinase, a key regulatory enzyme in
glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to PFK family that includes ATP- and
pyrophosphate (PPi)- dependent phosphofructokinases.
Some members evolved by gene duplication and thus have a
large C-terminal/N-terminal extension comprising a
second PFK domain. Generally, ATP-PFKs are allosteric
homotetramers, and PPi-PFKs are dimeric and
nonallosteric except for plant PPi-PFKs which are
allosteric heterotetramers.
Length = 338
Score = 145 bits (367), Expect = 4e-39
Identities = 98/327 (29%), Positives = 153/327 (46%), Gaps = 33/327 (10%)
Query: 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQN 235
K ++T GG PG+N IR +V + G++ + GI GY G + ++ E L + V +
Sbjct: 2 KIGVLTSGGDAPGMNAAIRGVVRSAIAEGLE-VYGIYEGYAGLVEGDIKE--LDWESVSD 58
Query: 236 IHLSGGSLLGVSRGAPTVSE-----IVDSMEERGINMLFVLGGNGTHAGANAIHNECRKR 290
I GG+++G +R +E +++++ GI+ L V+GG+G++ GA+ + E +
Sbjct: 59 IINRGGTIIGSARCKEFRTEEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSK 118
Query: 291 RMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEA--HSAYHGIGIVKLMG 348
V+G+P TIDNDI D T GFDTA++ AI+ A H +V++MG
Sbjct: 119 YQGFNVIGLPGTIDNDIKGTDYTIGFDTALKTIVEAIDRIRDTASSHQRTF---VVEVMG 175
Query: 349 RSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIET-KGSAVVCVAEGAGQ 407
R G IA+ A LA+G DI IPE P ++ +K E K +V VAEGA
Sbjct: 176 RHCGDIALEAGLATGA-DIIFIPEEPAADEWEEEMVDVIKKRRERGKRHGIVIVAEGAID 234
Query: 408 SLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDG 467
+ K + L+++ D + ++ R A D
Sbjct: 235 FIPKPITEK---------LLAKLVEERLG---------FDTRATVLGHVQRGGTPTAFDR 276
Query: 468 ILCTVLGQNAVHGAFAGFSGITVGLCN 494
IL + LG AV G G VG+ N
Sbjct: 277 ILASRLGAEAVELLLEGTGGTPVGIQN 303
>gnl|CDD|213713 TIGR02482, PFKA_ATP, 6-phosphofructokinase. 6-phosphofructokinase
(EC 2.7.1.11) catalyzes the addition of phosphate from
ATP to fructose 6-phosphate to give fructose
1,6-bisphosphate. This represents a key control step in
glycolysis. This model hits bacterial ATP-dependent
6-phosphofructokinases which lack a beta-hairpin loop
present in TIGR02483 family members. TIGR02483 contains
members that are ATP-dependent as well as members that
are pyrophosphate-dependent. TIGR02477 represents the
pyrophosphate-dependent phosphofructokinase,
diphosphate--fructose-6-phosphate 1-phosphotransferase
(EC 2.7.1.90) [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 301
Score = 143 bits (363), Expect = 6e-39
Identities = 98/336 (29%), Positives = 164/336 (48%), Gaps = 40/336 (11%)
Query: 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQN 235
K I+T GG PG+N IR +V T +G + + GI GY+G + ++ PL K V
Sbjct: 1 KIGILTSGGDAPGMNAAIRAVVRTAIYHGFE-VYGIRRGYKGLINGKI--EPLESKNVSG 57
Query: 236 IHLSGGSLLGVSR----GAPTVSEI-VDSMEERGINMLFVLGGNGTHAGANAIHNECRKR 290
I GG++LG +R V E V+++++ GI L V+GG+G++ GA ++ E
Sbjct: 58 IIHRGGTILGTARCPEFKTEEVREKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEE---- 113
Query: 291 RMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRS 350
+ V+G+P TIDNDI D T GFDTA+ A++ A S ++++MGR
Sbjct: 114 -GGIPVIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDKIRDTATSHERAF-VIEVMGRH 171
Query: 351 SGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVVCVAEGAGQSLI 410
+G +A++A +A+G +I +IPE +++ + R + K +++ VAEG
Sbjct: 172 AGDLALYAGIATGA-EIIIIPEFDYDID--ELIQRLKEQHEAGKKHSIIIVAEG------ 222
Query: 411 KKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILC 470
+ G+ +V I+++T I+ + + R +A D +L
Sbjct: 223 ------NIVGSAK--EVAKKIEEKTG---------IETRVTVLGHTQRGGSPSAFDRVLA 265
Query: 471 TVLGQNAVHGAFAGFSGITVGLCNTHYAYFPIPEVI 506
+ LG AV G G+ +G+ N PI E +
Sbjct: 266 SRLGAKAVELLLEGKGGVMIGIQNNKIVTHPIEEAL 301
>gnl|CDD|238388 cd00763, Bacterial_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include bacterial ATP-dependent
phosphofructokinases. These are allosrterically
regulated homotetramers; the subunits are of about 320
amino acids.
Length = 317
Score = 132 bits (335), Expect = 8e-35
Identities = 102/349 (29%), Positives = 154/349 (44%), Gaps = 55/349 (15%)
Query: 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQN 235
+ ++T GG PG+N IR +V + G++ + GI GY G ++ +PL R V +
Sbjct: 2 RIGVLTSGGDAPGMNAAIRGVVRSAIAEGLE-VYGIRDGYAGLIAGDI--VPLDRYSVSD 58
Query: 236 IHLSGGSLLGVSRGAPTVSE-----IVDSMEERGINMLFVLGGNGTHAGANAIHNECRKR 290
I GG+ LG +R E ++ +++ GI+ L V+GG+G++ GA R
Sbjct: 59 IINRGGTFLGSARFPEFKDEEGQAKAIEQLKKHGIDALVVIGGDGSYMGAM------RLT 112
Query: 291 RMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRS 350
VG+P TIDNDI D T GFDTA+ AI+ + S++ I +V++MGR
Sbjct: 113 EHGFPCVGLPGTIDNDIPGTDYTIGFDTALNTVVEAIDRIRDTS-SSHQRISVVEVMGRH 171
Query: 351 SGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIET-KGSAVVCVAEGAGQ-- 407
G IA+ A +A G I IPE+ F+ V +K IE K A+V VAEG
Sbjct: 172 CGDIALAAGIAGGAEFIV-IPEAEFD---REEVANRIKAGIERGKKHAIVVVAEGVYDVD 227
Query: 408 ---SLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANA 464
I++ + VLG ++ R A
Sbjct: 228 ELAKEIEEATGFETRAT-VLG-----------------------------HIQRGGSPTA 257
Query: 465 SDGILCTVLGQNAVHGAFAGFSGITVGLCNTHYAYFPIPEVISYPRAVD 513
D IL + +G AV AG G+ VG+ N + I + I +
Sbjct: 258 FDRILASRMGAYAVELLLAGKGGLAVGIQNEQLVHHDIIDAIENMKPFK 306
>gnl|CDD|184487 PRK14071, PRK14071, 6-phosphofructokinase; Provisional.
Length = 360
Score = 126 bits (318), Expect = 4e-32
Identities = 101/354 (28%), Positives = 164/354 (46%), Gaps = 29/354 (8%)
Query: 179 IVTCGGLCPGLNDVIRHIVI-TLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIH 237
I+T GG C GLN VIR +V YG + ++GI +G + + L V ++
Sbjct: 9 ILTSGGDCAGLNAVIRAVVHRARGTYGWE-VIGIRDATQGLMARPPQYIELDLDQVDDLL 67
Query: 238 LSGGSLLG-VSRGAPTV------------SEIVDSMEERGINMLFVLGGNGTHAGANAIH 284
GG++LG ++G P EI+D G++ L +GG+G+ A +
Sbjct: 68 RMGGTILGTTNKGDPFAFPMPDGSLRDRSQEIIDGYHSLGLDALIGIGGDGSLA---ILR 124
Query: 285 NECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIV 344
++ + + VG+PKTIDND+ + + GFDTAV A A++ + A S ++ + I+
Sbjct: 125 RLAQQGGINL--VGIPKTIDNDVGATEVSIGFDTAVNIATEALDRLHFTAAS-HNRVMIL 181
Query: 345 KLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVVCVAEG 404
++MGR +G+IA+ A +A G D+ LIPE P+ L +R + E K +V V+E
Sbjct: 182 EVMGRDAGHIALAAGIAGGA-DVILIPEIPYTLENVCKKIRERQE--EGKNFCLVVVSEA 238
Query: 405 AGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANA 464
++ T A G G +G + ++ + G V + ++ R +
Sbjct: 239 VRTEEGEQVTKTQALGEDRYGGIGQYLAEQIAER---TGAETRVTVLG--HIQRGGIPSP 293
Query: 465 SDGILCTVLGQNAVHGAFAGFSGITVGLCNTHYAYFPIPEVISYPRAVDPNSRM 518
D +L + G AV G V N PI E I+ RAVDP +
Sbjct: 294 RDRLLASAFGVAAVDLIAQGKFDRMVAWQNRQVVSVPIAEAIATYRAVDPEGTL 347
>gnl|CDD|109425 pfam00365, PFK, Phosphofructokinase.
Length = 279
Score = 123 bits (310), Expect = 1e-31
Identities = 80/238 (33%), Positives = 121/238 (50%), Gaps = 23/238 (9%)
Query: 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQN 235
K ++T GG PG+N IR +V + G++ + GI GY G + L + V +
Sbjct: 2 KIGVLTSGGDAPGMNAAIRAVVRSAIAEGLE-VYGIYEGYAGLVAGNI--KQLDWESVSD 58
Query: 236 IHLSGGSLLGVSRGAPTVSEI------VDSMEERGINMLFVLGGNGTHAGANAIHNECRK 289
I GG+ +G +R P E +++++ GI+ L V+GG+G++ GA+ + +E
Sbjct: 59 IIQRGGTFIGSAR-CPEFREREGRLKAAENLKKHGIDALVVIGGDGSYTGADLLTSE--- 114
Query: 290 RRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHG-IGIVKLMG 348
VG+P TIDNDI D T GFDTA+ AI+ I ++ H +V++MG
Sbjct: 115 --HGFNCVGLPGTIDNDICGTDYTIGFDTALNTIVEAID--RIRDTASSHQRTFVVEVMG 170
Query: 349 RSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIET-KGSAVVCVAEGA 405
R G +A+ A +A G D IPE+PF + LK E K +V VAEGA
Sbjct: 171 RHCGDLALVAGIAGGA-DYIFIPEAPFW---EEELCNRLKRGRERGKRHNIVIVAEGA 224
>gnl|CDD|237600 PRK14072, PRK14072, 6-phosphofructokinase; Provisional.
Length = 416
Score = 102 bits (256), Expect = 2e-23
Identities = 68/265 (25%), Positives = 120/265 (45%), Gaps = 33/265 (12%)
Query: 255 EIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTF 314
+++ + I F GGN + A + +K + +G+PKTIDND+ D
Sbjct: 94 RLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCP 153
Query: 315 GFDTAVEEAQRAINSAYIEAHSAYHG---IGIVKLMGRSSGYIAMHASLASGQID----I 367
GF +A + ++ A ++ +A + I+++MGR +G++A A+LA D +
Sbjct: 154 GFGSAAKYIATSVLEAALDV-AAMANTSKVFILEVMGRHAGWLAAAAALAKQNPDDAPHL 212
Query: 368 CLIPESPFNLHGPNGVLRHLKYLIETKGSAVVCVAEGA----GQSLIKKTNATDASGNIV 423
+PE PF+ L ++ +++ G VV V+EG G+ + + A DA G+
Sbjct: 213 IYLPERPFD---EEKFLADVRAIVKRYGYCVVVVSEGIRDADGKFIAEAGLAEDAFGHAQ 269
Query: 424 LGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILCT------VLGQNA 477
LG V ++ K +++G V + Y+ RA R AS T +G+ A
Sbjct: 270 LGGVAPVLANLIK---EKLGKK--VHWAVLDYLQRAARHIASK----TDVEEAYAVGKAA 320
Query: 478 VHGAFAGFSGITVG---LCNTHYAY 499
V A AG +G+ + Y +
Sbjct: 321 VEYALAGKNGVMPAIRRTSDDPYKW 345
>gnl|CDD|233884 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type.
Members of this family are eukaryotic (with one
exception) ATP-dependent 6-phosphofructokinases (EC
2.7.1.11) in which two tandem copies of the
phosphofructokinase are found. Members are found, often
including several isozymes, in animals and fungi and in
the bacterium Propionibacterium acnes KPA171202 (a human
skin commensal).
Length = 746
Score = 83.2 bits (206), Expect = 9e-17
Identities = 86/326 (26%), Positives = 138/326 (42%), Gaps = 46/326 (14%)
Query: 178 AIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIH 237
A++T GG G+N +R +V G + + I GY+G D + V+ I
Sbjct: 4 AVLTSGGDAQGMNAAVRAVVRMAIYVGCR-VYAIREGYQGLVDGGDNIEEAQWEDVRGIL 62
Query: 238 LSGGSLLGVSRGA-----PTVSEIVDSMEERGINMLFVLGGNGTHAGAN----------- 281
GG+++G +R P + ++ GI+ L V+GG+G+ GA+
Sbjct: 63 SLGGTIIGTARCKEFRERPGRLKAARNLVSNGIDALVVIGGDGSLTGADLFREEWPSLLE 122
Query: 282 ------AIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAH 335
I E + + +VG+ +IDND+ D T G D+A+ AI++ A
Sbjct: 123 ELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTDMTIGADSALHRICEAIDAISSTAQ 182
Query: 336 SAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIET-K 394
S +V++MGR GY+A+ A++A+G D IPE P + + LK + K
Sbjct: 183 SHQRAF-VVEVMGRHCGYLALMAAIATGA-DYVFIPERPPEEGWEDQLCHKLKRNRKAGK 240
Query: 395 GSAVVCVAEGAGQSLIKKTNATDASGN-IVLGDVGVLIQQETKKYFKEIGVPIDVKYIDP 453
+V VAEG A D N I DV ++ + +D +
Sbjct: 241 RKTIVIVAEG----------AIDRDLNPITSEDVKDVLVERLG---------LDTRITVL 281
Query: 454 TYMIRACRANASDGILCTVLGQNAVH 479
++ R +A D IL T G AV
Sbjct: 282 GHVQRGGAPSAFDRILATRQGVEAVL 307
Score = 79.3 bits (196), Expect = 1e-15
Identities = 64/266 (24%), Positives = 112/266 (42%), Gaps = 21/266 (7%)
Query: 178 AIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIH 237
AI+ G G+N R V + ++ I G+ G ++ E+ S V+
Sbjct: 393 AIIHVGAPAGGMNAATRSAV-RYALARGHTVIAIHNGFSGLARHDVRELTWSD--VEGWV 449
Query: 238 LSGGSLLGVSRGAPT--VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKR--RMK 293
GGS LG +R P + I ++ I+ L ++GG + R++ +
Sbjct: 450 GEGGSELGTNRSLPGDDLGTIAYYFQQHKIDGLIIIGGFEAFEALYQLDAA-REKYPAFR 508
Query: 294 VAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGY 353
+ +V +P TI N++ + + G DTA+ E ++ A ++ + +V+ MG SGY
Sbjct: 509 IPMVVIPATISNNVPGTEYSLGSDTALNEITEYCDNIKQSASASKRRVFVVETMGGYSGY 568
Query: 354 IAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVVCVAEGAGQSLIKKT 413
+A A LA+G D IPE + L+ L+ IE AG+ +++
Sbjct: 569 LATMAGLATGA-DAAYIPEEGIS-------LKDLQEDIEHLKETFAEGR--AGKLILRNE 618
Query: 414 NATDASGNIVLGDVGVLIQQETKKYF 439
AS + +I +E K F
Sbjct: 619 K---ASKVYTTDFIARIISEEGKGRF 641
>gnl|CDD|238389 cd00764, Eukaryotic_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include eukaryotic ATP-dependent
phosphofructokinases. These have evolved from the
bacterial PFKs by gene duplication and fusion events and
exhibit complex allosteric behavior.
Length = 762
Score = 79.5 bits (196), Expect = 2e-15
Identities = 79/336 (23%), Positives = 137/336 (40%), Gaps = 64/336 (19%)
Query: 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCD--KELTEMPLSRKVV 233
A++T GG G+N +R +V IY + + GY G + + + V
Sbjct: 5 AIAVLTSGGDAQGMNAAVRAVVRM-GIYVGAKVFFVYEGYEGLVKGGDYIKQA--EWESV 61
Query: 234 QNIHLSGGSLLGVSR-GAPTVSE----IVDSMEERGINMLFVLGGNGTHAGAN------- 281
N GG+++G +R E ++ +RGI L V+GG+G+ GA+
Sbjct: 62 SNWLQEGGTIIGSARCKEFREREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWP 121
Query: 282 ----------AIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAY 331
I E + + +VG+ +IDND D T G D+A+ ++
Sbjct: 122 SLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCGTDMTIGTDSALHRICEVVD--A 179
Query: 332 IEAHSAYHGIG-IVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYL 390
I + H ++++MGR GY+A+ + LA+G D IPE P +G +
Sbjct: 180 ITTTAQSHQRTFVLEVMGRHCGYLALVSGLATGA-DWIFIPERP----PEDGWEDQMCRR 234
Query: 391 IE---TKGS--AVVCVAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVP 445
+ ++G ++ VAEG A D + T + K++ V
Sbjct: 235 LSEHRSRGKRLNIIIVAEG----------AIDDQLKPI-----------TSEDVKDLVVE 273
Query: 446 ---IDVKYIDPTYMIRACRANASDGILCTVLGQNAV 478
+D + ++ R +A D IL +++G AV
Sbjct: 274 RLGLDTRVTTLGHVQRGGTPSAFDRILASLMGVEAV 309
Score = 75.6 bits (186), Expect = 3e-14
Identities = 64/258 (24%), Positives = 104/258 (40%), Gaps = 16/258 (6%)
Query: 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQN 235
AIV G G+N +R V +G + I G+ G ++ E L V
Sbjct: 391 NIAIVNVGAPAAGMNAAVRSAVRYGLAHGHRPYA-IYDGFEGLAKGQIVE--LGWIDVGG 447
Query: 236 IHLSGGSLLGVSRGAP--TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKR--R 291
GGS LG R P + I + ++ GI+ L ++GG + G + E R++
Sbjct: 448 WTGRGGSELGTKRTLPKKDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQL-REAREQYEE 506
Query: 292 MKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSS 351
+ +V +P T+ N++ D + G DTA+ + + A + IV+ MG
Sbjct: 507 FCIPMVLIPATVSNNVPGTDFSLGSDTALNALMKYCDRIKQSASGTKRRVFIVETMGGYC 566
Query: 352 GYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLK-YLIETKGSAVVCVAEGAGQSLI 410
GY+A LA G D + E PFN+ + HL + T G +V ++
Sbjct: 567 GYLATMTGLAVGA-DAAYVFEEPFNIRDLQENVEHLTEKMKTTIGRGLV------LRNEK 619
Query: 411 KKTNATDASGNIVLGDVG 428
N T + + G
Sbjct: 620 CNENYTTVFTYELYSEEG 637
>gnl|CDD|180620 PRK06555, PRK06555, pyrophosphate--fructose-6-phosphate
1-phosphotransferase; Validated.
Length = 403
Score = 72.7 bits (179), Expect = 1e-13
Identities = 102/411 (24%), Positives = 164/411 (39%), Gaps = 73/411 (17%)
Query: 176 KAAIVTCGGLCPGLNDVI-----RHIVITLEIYGVKNIVGIPFGYRGFC-DKELTEMPLS 229
K A++T GGL P L+ + R+ I E+ I+ GY+G + P
Sbjct: 5 KVALLTAGGLAPCLSSAVGGLIERYTEIAPEV----EIIAYRSGYQGLLLGDSIEITPAV 60
Query: 230 RKVVQNIHLSGGSLLGVSRGAPT----------VSEIVDSME---ER----GINMLFVLG 272
R +H GGS +G SR T V E + ++ ER G+++L +G
Sbjct: 61 RANAGLLHRYGGSPIGNSRVKLTNVADCVKRGLVKEGENPLKVAAERLAADGVDILHTIG 120
Query: 273 GNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYI 332
G+ T+ A + + + VVG+PKTIDND++ + ++ G TA E+ R ++
Sbjct: 121 GDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLGAWTAAEQGARFFDNVIN 180
Query: 333 EAHSAYHGIGIVKLMGRSSGYIAMHASLA-----SGQ--------------IDICLIPES 373
E + + I ++MGR+ G++ + A Q I +PE
Sbjct: 181 EHSANPRMLIIHEVMGRNCGWLTAATARAYREWLDRQEYVPGFGLSAERWDIHAVYLPEM 240
Query: 374 PFNLHGPNGVLRHLKYLIETKGSAVVCVAEGAGQSLIKK-------TNATDASGNIVLGD 426
F+L LK +++ G+ + ++EGAG I DA G++ L
Sbjct: 241 AFDLEAE---AERLKAVMDEVGNVNIFLSEGAGLDAIVAEMEAAGEEVKRDAFGHVKLDT 297
Query: 427 VGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGIL---CTVLGQNAVHGAFA 483
+ K++ + +G V Y R+ ANA D L L AV A
Sbjct: 298 INPG-AWFAKQFAELLGAE-KVMVQKSGYFARSAPANAEDLRLIKSMVDL---AVECALR 352
Query: 484 GFSGITVGLCNTHYAYFPIPEVISYPR-----AVDPNSRMWHRCLTSTGQP 529
G SG+ G I +PR A D ++ + L GQP
Sbjct: 353 GVSGVI-GHDEEQGG---KLRAIEFPRIKGGKAFDTSTPWFTELLDEIGQP 399
>gnl|CDD|238390 cd00765, Pyrophosphate_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include pyrophosphate-dependent
phosphofructokinases. These are found in bacteria as
well as plants. These may be dimeric nonallosteric
enzymes as in bacteria or allosteric heterotetramers as
in plants.
Length = 550
Score = 72.6 bits (178), Expect = 2e-13
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 25/224 (11%)
Query: 164 PREEIYFKPEEVKAAIVTCGGLCPGLNDVIRHIVITLE-------IYGVKNIVGIPFGYR 216
P ++ ++K IV GG PG ++VI + L+ +YG K G P G
Sbjct: 62 PDQDAPSSAPKLKIGIVLSGGQAPGGHNVISGLFDYLKERAKGSTLYGFK---GGPAGIL 118
Query: 217 GFCDK-ELTEMPLSRKVVQNIHLSGG-SLLGVSRGAPTVSE----IVDSMEERGINMLFV 270
CD EL + +Q +GG ++ R + ++ ++ ++ L V
Sbjct: 119 K-CDYIELNA-----EYIQPYRNTGGFDMICSGRTKIETEDQFKQAEETAKKLDLDALVV 172
Query: 271 LGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDIL--LMDKTFGFDTAVEEAQRAIN 328
+GG+ ++ A + R + +K V+GVPKTID D+ ++ +FGFDTA + I
Sbjct: 173 IGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKIYSELIG 232
Query: 329 SAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPE 372
+ +A S VKLMGRS+ +IA+ +L + +IC+I E
Sbjct: 233 NVMRDARSTGKYWHFVKLMGRSASHIALECALKT-HPNICIISE 275
>gnl|CDD|131530 TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosphate
1-phosphotransferase. Diphosphate--fructose-6-phosphate
1-phosphotransferase catalyzes the addition of phosphate
from diphosphate (PPi) to fructose 6-phosphate to give
fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is
also known as pyrophosphate-dependent
phosphofructokinase. The usage of PPi-dependent enzymes
in glycolysis presumably frees up ATP for other
processes. TIGR02482 represents the ATP-dependent
6-phosphofructokinase enzyme contained within Pfam
pfam00365: Phosphofructokinase. This model hits
primarily bacterial, plant alpha, and plant beta
sequences [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 539
Score = 71.6 bits (176), Expect = 3e-13
Identities = 37/114 (32%), Positives = 65/114 (57%), Gaps = 9/114 (7%)
Query: 264 GINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDI--LLMDKTFGFDTAVE 321
++ L ++GG+ ++ A + K +K V+GVPKTID D+ ++ +FGFDTA +
Sbjct: 161 KLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACK 220
Query: 322 EAQRAINSAYIEAHSA---YHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPE 372
I + +A SA +H ++LMGRS+ +IA+ +L + ++C+I E
Sbjct: 221 IYSELIGNICRDALSAKKYWH---FIRLMGRSASHIALECALQT-HPNVCIIGE 270
>gnl|CDD|235930 PRK07085, PRK07085, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 555
Score = 70.3 bits (173), Expect = 9e-13
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 21/122 (17%)
Query: 262 ERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDI--LLMDKTFGFDTA 319
+ ++ L ++GG+ ++ A + K K V+GVPKTID D+ ++ +FGFDTA
Sbjct: 162 KLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTA 221
Query: 320 -------VEEAQRAINSA--YIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLI 370
+ R SA Y +H +KLMGRS+ +IA+ +L + +ICLI
Sbjct: 222 TKTYSEMIGNISRDALSAKKY------WH---FIKLMGRSASHIALECALQT-HPNICLI 271
Query: 371 PE 372
E
Sbjct: 272 SE 273
>gnl|CDD|240345 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional.
Length = 1419
Score = 70.5 bits (172), Expect = 1e-12
Identities = 58/211 (27%), Positives = 113/211 (53%), Gaps = 21/211 (9%)
Query: 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKN-IVGIPFGYRGFCDKE---LTEMPLSR 230
+K I+ GG PG ++VI I + Y ++ ++G G G K +T+ ++R
Sbjct: 178 LKIGIILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSKNYVTITDSLMNR 237
Query: 231 KVVQNIHLSGGSLLGVSRGAPTVSEIVDSME----ERGINMLFVLGGNGTHAGANAIHNE 286
+N L G ++L RG + + ++E + +N L ++GG+G+++ A I
Sbjct: 238 --FRN--LGGFNMLWSGRGKVRNKDDLIAIENIVAKLKLNGLVIIGGDGSNSNAALISEY 293
Query: 287 CRKRRMKVAVVGVPKTIDNDIL--LMDKTFGFDTAVEEAQRAINSAYIE---AHSAYHGI 341
+R++ ++++G+PKTID D+ ++ +FGFDTA + I + + H+ YH
Sbjct: 294 FAERQIPISIIGIPKTIDGDLKSEAIEISFGFDTATKTYSEVIGNLCTDVKTGHNVYH-- 351
Query: 342 GIVKLMGRSSGYIAMHASLASGQIDICLIPE 372
+V++MGRS+ ++ + +L + + +I LI E
Sbjct: 352 -VVRVMGRSASHVVLECALQT-RPNIVLIGE 380
Score = 36.6 bits (84), Expect = 0.040
Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 253 VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDIL--LM 310
V E V +++ +N L + G N T A + ++++ +VVG+P T N+++ L+
Sbjct: 920 VCETVTNLQ---LNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELI 976
Query: 311 DKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLAS 362
+ GFD++ + I + +A S ++LMGRS + + +L +
Sbjct: 977 ETCVGFDSSTKVYASLIGNVLTDAVSMPKYWHFIRLMGRSPSHEVLECALQT 1028
>gnl|CDD|215140 PLN02251, PLN02251, pyrophosphate-dependent phosphofructokinase.
Length = 568
Score = 58.3 bits (141), Expect = 5e-09
Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 9/110 (8%)
Query: 268 LFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMD--KTFGFDTAVEEAQR 325
L V+GG+ ++ A + R + +K V+G PKTID D+ + +FGFDTA +
Sbjct: 194 LVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYSE 253
Query: 326 AINSAYIEAHSA---YHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPE 372
I + I+A S YH V+LMGR++ +I + +L + +I +I E
Sbjct: 254 MIGNVMIDARSTGKYYH---FVRLMGRAASHITLECALQT-HPNITIIGE 299
>gnl|CDD|185647 PTZ00468, PTZ00468, phosphofructokinase family protein;
Provisional.
Length = 1328
Score = 57.3 bits (138), Expect = 2e-08
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
Query: 261 EERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDIL--LMDKTFGFDT 318
E+ ++ L V+GG+ ++ A + ++ VVG PKTID D+ +++ +FG+DT
Sbjct: 193 EKLKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDT 252
Query: 319 AVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLAS 362
AV+ I S + +G V+LMGRS+ +I + L +
Sbjct: 253 AVKTYSEQIGSIMDAIKTEGYGYYFVRLMGRSASHITLECGLQT 296
Score = 36.1 bits (83), Expect = 0.051
Identities = 23/127 (18%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Query: 253 VSEIVDSMEERGINMLFVLGGN-GTHAGANAIHNECR----KRRMKVAVVGVPKTIDNDI 307
+S+++ R I ++G + GA+ + ++ VV VP ++N I
Sbjct: 792 LSQLLSFFNMRAI---AIVGNSEAATFGASLSEQLICMSLNGMKSEIPVVFVPVCLENSI 848
Query: 308 L--LMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQI 365
+++ GFD+ + + + ++ SA +K++G + +A+ + +
Sbjct: 849 SHQMIETCIGFDSVTKSISTLVGNLLTDSASATKYWYFMKMIGDKTSNVALEVGIQT-HP 907
Query: 366 DICLIPE 372
++ +IPE
Sbjct: 908 NLVVIPE 914
>gnl|CDD|215543 PLN03028, PLN03028, pyrophosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 610
Score = 52.1 bits (125), Expect = 5e-07
Identities = 49/196 (25%), Positives = 95/196 (48%), Gaps = 10/196 (5%)
Query: 175 VKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNI-VGIPFGYRGFCDKELTEMPLSRKVV 233
V+ +V CG PG ++VI + L+ + ++ +G G G ++ E ++ V+
Sbjct: 80 VRVGVVFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFLGGTEGLFAQKTLE--ITDDVL 137
Query: 234 QNIHLSGG-SLLGVSRGAPTVSEIVD----SMEERGINMLFVLGGNGTHAGANAIHNECR 288
GG LLG ++ +E V+ + E ++ L ++GG ++ A +
Sbjct: 138 STYKNQGGYDLLGRTKDQIRTTEQVNAALAACEALKLDGLVIIGGVTSNTDAAQLAETFA 197
Query: 289 KRRMKVAVVGVPKTIDNDI--LLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKL 346
+ + K VVGVP T++ D+ ++ GFDT + + I++ +A SA ++L
Sbjct: 198 EAKCKTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRL 257
Query: 347 MGRSSGYIAMHASLAS 362
MGR + ++A+ +L S
Sbjct: 258 MGRKASHVALECALQS 273
>gnl|CDD|216543 pfam01513, NAD_kinase, ATP-NAD kinase. Members of this family
include ATP-NAD kinases EC:2.7.1.23, which catalyzes the
phosphorylation of NAD to NADP utilising ATP and other
nucleoside triphosphates as well as inorganic
polyphosphate as a source of phosphorus. Also includes
NADH kinases EC:2.7.1.86.
Length = 243
Score = 32.3 bits (74), Expect = 0.49
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 257 VDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVP 300
M E G++++ VLGG+GT A + + ++G+
Sbjct: 28 TREMVEEGVDLIVVLGGDGTALDAARLLG-----DHDIPILGIN 66
>gnl|CDD|222212 pfam13545, HTH_Crp_2, Crp-like helix-turn-helix domain. This
family represents a crp-like helix-turn-helix domain
that is likely to bind DNA.
Length = 72
Score = 29.1 bits (66), Expect = 0.84
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 9/47 (19%)
Query: 219 CDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEIVDSMEERGI 265
D L E+PL+++ + +LGVSR TVS ++++E G+
Sbjct: 16 SDGNLLELPLTQEDL-------ADMLGVSR--STVSRALNALEREGL 53
>gnl|CDD|148953 pfam07626, PSD3, Protein of unknown function (DUF1587). A region
of similarity shared by several Rhodopirellula baltica
cytochrome-like proteins that are predicted to be
secreted. These proteins also match pfam07624.
Length = 68
Score = 28.7 bits (65), Expect = 1.1
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 104 TPVTEDFADGYPSDEKWHGYINN 126
V D AD P DE G+ N
Sbjct: 16 LGVDFDPADDLPPDESGEGFDNI 38
>gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase. Characterized members
of this protein family are L-lysine 6-transaminase, also
called lysine epsilon-aminotransferase (LAT). The
immediate product of the reaction of this enzyme on
lysine, 2-aminoadipate 6-semialdehyde, becomes
1-piperideine 6-carboxylate, or P6C. This product may be
converted subsequently to pipecolate or
alpha-aminoadipate, lysine catabolites that may be
precursors of certain seconary metabolites.
Length = 431
Score = 31.7 bits (72), Expect = 1.1
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 9/59 (15%)
Query: 461 RANASDGILCTVLGQNAVH--GAFAGFSGITVGLCNTH---YAYFPIPEVISYPRAVDP 514
R N + GI LG +H AF G SG T+ L NT A FP +PR +P
Sbjct: 129 RHNQARGI-PAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPK---FDWPRIDNP 183
>gnl|CDD|225740 COG3199, COG3199, Predicted inorganic polyphosphate/ATP-NAD kinase
[General function prediction only].
Length = 355
Score = 31.6 bits (72), Expect = 1.1
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 257 VDSMEERGINMLFVLGGNGTH-AGANAIHNECRKRRMKVAVVGVP 300
V M ERG++++ GG+GT A A+ V V+G+P
Sbjct: 93 VRRMVERGVDLIVFAGGDGTARDVAEAV-------GADVPVLGIP 130
>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem
repeats of the cystathionine beta-synthase (CBS pair)
domains associated with KpsF/GutQ domains in the API
[A5P (D-arabinose 5-phosphate) isomerase] protein.
These APIs catalyze the conversion of the pentose
pathway intermediate D-ribulose 5-phosphate into A5P, a
precursor of 3-deoxy-D-manno-octulosonate, which is an
integral carbohydrate component of various glycolipids
coating the surface of the outer membrane of
Gram-negative bacteria, including lipopolysaccharide and
many group 2 K-antigen capsules. CBS is a small domain
originally identified in cystathionine beta-synthase and
subsequently found in a wide range of different
proteins. CBS domains usually come in tandem repeats,
which associate to form a so-called Bateman domain or a
CBS pair which is reflected in this model. The
interface between the two CBS domains forms a cleft that
is a potential ligand binding site. The CBS pair
coexists with a variety of other functional domains. It
has been proposed that the CBS domain may play a
regulatory role, although its exact function is unknown.
Length = 114
Score = 29.0 bits (66), Expect = 2.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 253 VSEIVDSMEERGINMLFVLGGNGTHAGANAIHN 285
+E ++ MEE I L V+ NG G IH+
Sbjct: 78 AAEALELMEENKITALPVVDDNGRPVGVLHIHD 110
>gnl|CDD|239016 cd02065, B12-binding_like, B12 binding domain (B12-BD). Most of the
members bind different cobalamid derivates, like B12
(adenosylcobamide) or methylcobalamin or methyl-Co(III)
5-hydroxybenzimidazolylcobamide. This domain is found in
several enzymes, such as glutamate mutase, methionine
synthase and methylmalonyl-CoA mutase. Cobalamin
undergoes a conformational change on binding the
protein; the dimethylbenzimidazole group, which is
coordinated to the cobalt in the free cofactor, moves
away from the corrin and is replaced by a histidine
contributed by the protein. The sequence
Asp-X-His-X-X-Gly, which contains this histidine ligand,
is conserved in many cobalamin-binding proteins. Not all
members of this family contain the conserved binding
motif.
Length = 125
Score = 29.3 bits (66), Expect = 2.2
Identities = 20/107 (18%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Query: 206 KNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVS----RGAPTVSEIVDSME 261
KNIV I GF +L ++V+ ++G+S + ++++++
Sbjct: 16 KNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEEDADVVGLSALSTTHMEAMKLVIEALK 75
Query: 262 ERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDIL 308
E GI++ V+GG H A+ + + P ++ + +
Sbjct: 76 ELGIDIPVVVGGA--HPTADPEEPKVDAVVIGEGEYAGPALLEVEGI 120
>gnl|CDD|185516 PTZ00215, PTZ00215, ribose 5-phosphate isomerase; Provisional.
Length = 151
Score = 29.6 bits (67), Expect = 2.3
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 20/86 (23%)
Query: 428 GVLIQQETKKYFKEIGVPIDVKYID---------PTYMIRACRANASDGILCTVLGQNAV 478
G ++ E Y K G ++ + P + + C +L V
Sbjct: 13 GFDLKNEIIDYIKNKGKEYKIEDMGTYTAESVDYPDFAEKVCEEVLKGEADTGIL----V 68
Query: 479 HGAFAGFS-------GITVGLCNTHY 497
G+ G S GI LC+ HY
Sbjct: 69 CGSGIGISIAANKVKGIRCALCHDHY 94
>gnl|CDD|130890 TIGR01831, fabG_rel, 3-oxoacyl-(acyl-carrier-protein) reductase,
putative. This model represents a small, very well
conserved family of proteins closely related to the FabG
family, TIGR01830, and possibly equal in function. In
all completed genomes with a member of this family, a
FabG in TIGR01830 is also found [Fatty acid and
phospholipid metabolism, Biosynthesis].
Length = 239
Score = 29.5 bits (66), Expect = 3.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 316 FDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAM 356
FD A A R + A I H AY+G+ + + R + + A+
Sbjct: 55 FDVADRVACRTLLEADIAEHGAYYGVVLNAGITRDAAFPAL 95
>gnl|CDD|165452 PHA03181, PHA03181, helicase-primase primase subunit; Provisional.
Length = 764
Score = 30.3 bits (68), Expect = 3.4
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 76 EKRFSLPHITDIFRDATPIPSTFCLRMRTPVTEDFADGYPSDEKWHGYI----NNNDRVL 131
EK L R T +P++F + TP + KWH + ++++L
Sbjct: 242 EKPLILDGSQAPVRTLTLVPTSFDCLVTTPAEFSLSALLAIYAKWHEKLYSTAGGSEKIL 301
Query: 132 LKVINFSSP-TSAGAECIDRDCT 153
+ + P T+ E +D C
Sbjct: 302 TPIFTYIGPETNPRGEDVDYACI 324
>gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional.
Length = 443
Score = 29.9 bits (68), Expect = 3.6
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 461 RANASDGILCTVLGQNAVH--GAFAGFSGITVGLCNT---HYAYFPIPEVISYPRAVDP 514
R N + GI LG +H GAF G SG T+ L NT A FP +PR +P
Sbjct: 136 RKNEARGI-DPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFP---KFDWPRIDNP 190
>gnl|CDD|235432 PRK05367, PRK05367, glycine dehydrogenase; Provisional.
Length = 954
Score = 30.1 bits (69), Expect = 4.2
Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 357 HASLASGQIDICLIPESPFNLHGPN 381
H S G D+CLIP S HG N
Sbjct: 582 HESRGEGHRDVCLIPSSA---HGTN 603
>gnl|CDD|177123 MTH00048, COX1, cytochrome c oxidase subunit I; Provisional.
Length = 511
Score = 29.6 bits (67), Expect = 4.5
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 442 IGVPIDVKYIDPTYMIRACRANASDGILCTVLG 474
IGVP +K YM+ R SD ++ V+
Sbjct: 310 IGVPTGIKVFSWLYMLLNSRVRKSDPVVWWVVS 342
>gnl|CDD|233603 TIGR01862, N2-ase-Ialpha, nitrogenase component I, alpha chain.
This model represents the alpha chain of all three
varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of
nitrogenase [Central intermediary metabolism, Nitrogen
fixation].
Length = 443
Score = 29.7 bits (67), Expect = 4.6
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 22/89 (24%)
Query: 255 EIVDSMEERGINMLFVLGGNGTHAG-----------------ANAIHNECRKR----RMK 293
+ +EE GI ++ G+GT+ AN I NE +R MK
Sbjct: 208 VMRIYLEEMGIQVVATFTGDGTYDEIRLMHKAKLNLVHCARSANYIANELEERYGIPWMK 267
Query: 294 VAVVGVPKTIDNDILLMDKTFGFDTAVEE 322
+ G T ++ + + FG + EE
Sbjct: 268 IDFFGFTYTAES-LRAIAAFFGIEKRAEE 295
>gnl|CDD|218038 pfam04350, PilO, Pilus assembly protein, PilO. PilO proteins are
involved in the assembly of pilin. However, the precise
function of this family of proteins is not known.
Length = 144
Score = 28.3 bits (64), Expect = 5.0
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 49 DEISQSARASGLDFNDPDWKSKFQSDF 75
++I+Q+ SGL+F + +F
Sbjct: 57 EDINQAGLGSGLEFELFKPGPEVPKEF 83
>gnl|CDD|173595 PTZ00404, PTZ00404, cytochrome P450; Provisional.
Length = 482
Score = 29.3 bits (66), Expect = 5.7
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 14/53 (26%)
Query: 291 RMK-VAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIG 342
R K V+ G+P++ NDI++ F ++AQ IN Y+ +G
Sbjct: 354 RYKPVSPFGLPRSTSNDIIIGGGHF----IPKDAQILIN---------YYSLG 393
>gnl|CDD|173865 cd08500, PBP2_NikA_DppA_OppA_like_4, The substrate-binding
component of an uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system
contains the type 2 periplasmic binding fold. This CD
represents the substrate-binding domain of an
uncharacterized ATP-binding cassette (ABC) type
nickel/dipeptide/oligopeptide-like transporter. The
oligopeptide-binding protein OppA and the
dipeptide-binding protein DppA show significant sequence
similarity to NikA, the initial nickel receptor. The
DppA binds dipeptides and some tripeptides and is
involved in chemotaxis toward dipeptides, whereas the
OppA binds peptides of a wide range of lengths (2-35
amino acid residues) and plays a role in recycling of
cell wall peptides, which precludes any involvement in
chemotaxis. Most of other periplasmic binding proteins
are comprised of only two globular subdomains
corresponding to domains I and III of the
dipeptide/oligopeptide binding proteins. The structural
topology of these domains is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport
proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 499
Score = 28.7 bits (65), Expect = 8.1
Identities = 13/56 (23%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 419 SGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILCTVLG 474
+GN + D+ LI+ +++IG+ ++++ ID ++ R +A++ +LG
Sbjct: 352 AGNSIREDIAELIKD----DWRKIGIKVNLQPIDFNLLVT--RLSANEDWDAILLG 401
>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional.
Length = 381
Score = 28.9 bits (65), Expect = 8.3
Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 272 GGNGTH-AGANAIHNECRKRRM 292
G GTH +G A N CR RM
Sbjct: 79 SGGGTHRSGQGAFGNMCRGGRM 100
>gnl|CDD|173860 cd08495, PBP2_NikA_DppA_OppA_like_8, The substrate-binding
component of an uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system
contains the type 2 periplasmic binding fold. This CD
represents the substrate-binding domain of an
uncharacterized ATP-binding cassette (ABC) type
nickel/dipeptide/oligopeptide-like transporter. The
oligopeptide-binding protein OppA and the
dipeptide-binding protein DppA show significant sequence
similarity to NikA, the initial nickel receptor. The
DppA binds dipeptides and some tripeptides and is
involved in chemotaxis toward dipeptides, whereas the
OppA binds peptides of a wide range of lengths (2-35
amino acid residues) and plays a role in recycling of
cell wall peptides, which precludes any involvement in
chemotaxis. Most of other periplasmic binding proteins
are comprised of only two globular subdomains
corresponding to domains I and III of the
dipeptide/oligopeptide binding proteins. The structural
topology of these domains is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport
proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 482
Score = 28.5 bits (64), Expect = 9.7
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 430 LIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGI--LCTVLGQNAVHGAFA---- 483
IQQ EIG+ +D++ ++ + A RA A DG + ++ F
Sbjct: 353 FIQQ----NLAEIGIDLDIEVVEWADLYNAWRAGAKDGSRDGANAINMSSAMDPFLALVR 408
Query: 484 GFSGITVGLCNTHYAYFPIPEV 505
S +++ + PE
Sbjct: 409 FLSSKIDPPVGSNWGGYHNPEF 430
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.424
Gapped
Lambda K H
0.267 0.0795 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,666,112
Number of extensions: 2731275
Number of successful extensions: 2700
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2622
Number of HSP's successfully gapped: 59
Length of query: 532
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 431
Effective length of database: 6,457,848
Effective search space: 2783332488
Effective search space used: 2783332488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.1 bits)