RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 009559
(532 letters)
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei}
PDB: 3f5m_A*
Length = 487
Score = 550 bits (1418), Expect = 0.0
Identities = 166/417 (39%), Positives = 232/417 (55%), Gaps = 14/417 (3%)
Query: 115 PSDEKWHGYINNNDRVLLKVINFSSPTSAGAECIDRDCTWVEQWVHRAGPREEIYFKPEE 174
+ + D ++ P+S + A R I+F P E
Sbjct: 44 KKYSSRTEFRDKTDYIMYNPRPRDEPSSENPVSVSP------LLCELAAARSRIHFNPTE 97
Query: 175 VKAAIVTCGGLCPGLNDVIRHIVITL-EIYGVKNIVGIPFGYRGFCDKELTE-MPLSRKV 232
IVTCGG+CPGLNDVIR I +T +Y VK ++G FGY G K + L R
Sbjct: 98 TTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGR 157
Query: 233 VQNIHLSGGSLLGVSRGAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRM 292
V NIH GG++LG SRG E+VD++E G+N+LF +GG+GT GA I E ++R +
Sbjct: 158 VTNIHHYGGTILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGV 217
Query: 293 KVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSG 352
++V GVPKTIDND+ +TFGF TAVE+A +AI +AY EA SA +G+G+VKLMGR SG
Sbjct: 218 DISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLMGRDSG 277
Query: 353 YIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVVCVAEGAGQSLIKK 412
+IA A++AS Q +ICL+PE+P + V+ L+ S V+ VAEG GQ +
Sbjct: 278 FIAAQAAVASAQANICLVPENPISEQ---EVMSLLERRFCHSRSCVIIVAEGFGQDWGRG 334
Query: 413 TNATDASGNIVLGDVGVLIQQETKKYFKEIGV---PIDVKYIDPTYMIRACRANASDGIL 469
+ DASGN L D+GV++ ++ K + K VKYIDP+YMIRAC +A+D +
Sbjct: 335 SGGYDASGNKKLIDIGVILTEKVKAFLKANKSRYPDSTVKYIDPSYMIRACPPSANDALF 394
Query: 470 CTVLGQNAVHGAFAGFSGITVGLCNTHYAYFPIPEVISYPRAVDPNSRMWHRCLTST 526
C L AVH A AG +G + + + +Y PI S R +D ++W + T
Sbjct: 395 CATLATLAVHEAMAGATGCIIAMRHNNYILVPIKVATSVRRVLDLRGQLWRQVREIT 451
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer,
transferase; HET: FBP; 2.11A {Borrelia burgdorferi}
SCOP: c.89.1.1 PDB: 1kzh_A*
Length = 555
Score = 223 bits (569), Expect = 4e-66
Identities = 59/291 (20%), Positives = 119/291 (40%), Gaps = 23/291 (7%)
Query: 164 PREEIYFKPEEVKAAIVTCGGLCPGLNDVIRHIVITLE-IYGVKNIVGIPFGYRGFCDKE 222
E + + I+ GG PG ++VI + ++ + G G G + +
Sbjct: 62 EGESSLSFSKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLEND 121
Query: 223 LTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSE-----IVDSMEERGINMLFVLGGNGTH 277
+ L+ ++ + +GG + S +E + +E +N + ++GG+ ++
Sbjct: 122 K--IELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSN 179
Query: 278 AGANAIHNECRKRRMKVAVVGVPKTIDNDI--LLMDKTFGFDTAVEEAQRAINSAYIEAH 335
A + +K + V+GVPKTID D+ ++ +FGFD+A + I + +A
Sbjct: 180 TNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAM 239
Query: 336 SAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLH-GPNGVLRHLKYLIET- 393
S VKLMGRS+ ++A+ +L + +IC++ E + ++ + +I
Sbjct: 240 STKKYWHFVKLMGRSASHVALECALKTHP-NICIVSEEVLAKKKTLSEIIDEMVSVILKR 298
Query: 394 ----KGSAVVCVAEGAGQS------LIKKTNATDASGNIVLGDVGVLIQQE 434
VV V EG + L+ + + + +E
Sbjct: 299 SLNGDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKE 349
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A
{Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A*
1mto_A*
Length = 319
Score = 198 bits (506), Expect = 2e-59
Identities = 96/345 (27%), Positives = 156/345 (45%), Gaps = 47/345 (13%)
Query: 178 AIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIH 237
++T GG PG+N +R +V + V+ + GI GY G ++ L V +I
Sbjct: 5 GVLTSGGDSPGMNAAVRAVVRKAIYHDVE-VYGIYNGYAGLISGKI--EKLELGSVGDII 61
Query: 238 LSGGSLLGVSRGAP-----TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRM 292
GG+ L +R + + ++++ GI L V+GG+G++ GA +
Sbjct: 62 HRGGTKLYTARCPEFKTVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLT------EH 115
Query: 293 KVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHG-IGIVKLMGRSS 351
VGVP TIDNDI D T GFDTA+ AI+ A S H ++++MGR +
Sbjct: 116 GFPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATS--HERTYVIEVMGRHA 173
Query: 352 GYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIET-KGSAVVCVAEGAGQSLI 410
G IA+ A LA G + LIPE+ +++ + ++ LK E K +++ VAEG G +
Sbjct: 174 GDIALWAGLAGGA-ESILIPEADYDM---HEIIARLKRGHERGKKHSIIIVAEGVGSGV- 228
Query: 411 KKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILC 470
+ G I++ET ++ + ++ R +A+D +L
Sbjct: 229 ---------------EFGKRIEEETN---------LETRVSVLGHIQRGGSPSAADRVLA 264
Query: 471 TVLGQNAVHGAFAGFSGITVGLCNTHYAYFPIPEVISYPRAVDPN 515
+ LG AV G G VG+ N I E++ V+ N
Sbjct: 265 SRLGAYAVELLLEGKGGRCVGIQNNKLVDHDIIEILETKHTVEQN 309
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Nitrosospira
multiformis atcc 25196} PDB: 3k2q_A
Length = 419
Score = 201 bits (512), Expect = 3e-59
Identities = 68/370 (18%), Positives = 124/370 (33%), Gaps = 38/370 (10%)
Query: 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYG--VKNIVGIPFGYRGFCDKELTEM-PLSRKV 232
A GG+ +N ++ + I G G ++L + S
Sbjct: 5 NAFYAQSGGVTAVINASAAGVIEAARKQSGKIGRIYAGRNGIIGALTEDLIDTGQESDAA 64
Query: 233 VQNIHLSGGSLLGVSR--------GAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIH 284
+ + + G R +++ + I F GG + +
Sbjct: 65 ISALRYTPSGAFGSCRYKLKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVS 124
Query: 285 NECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSA---YHGI 341
+ + VPKT+DND+ + D GF + + + A + S +
Sbjct: 125 QLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVAKYIAVSTLEASFDVASMSATSTKV 184
Query: 342 GIVKLMGRSSGYIAMHASLASG----QIDICLIPESPFNLHGPNGVLRHLKYLIETKGSA 397
++++MGR +G+IA LAS + L PE F+ L + ++ G
Sbjct: 185 FVLEVMGRHAGWIAAAGGLASSPEREIPVVILFPEISFDK---QKFLAKVDSCVKKFGYC 241
Query: 398 VVCVAEGA---GQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPT 454
V V+EG + DA G+ LG V ++ K+ + +
Sbjct: 242 SVVVSEGVKGDDGKFLSDQGVRDAFGHAQLGGVAPVVASMVKEGLG-----LKYHWGVAD 296
Query: 455 YMIRACRANAS--DGILCTVLGQNAVHGAFAGFSGITVGLCNT-------HYAYFPIPEV 505
Y+ RA R AS D +GQ AV A G + + + + +V
Sbjct: 297 YLQRAARHIASKTDVEQAYAMGQAAVEFAVQGHNSVMPTIERISARPYQWKVGMAQLSQV 356
Query: 506 ISYPRAVDPN 515
+ + + N
Sbjct: 357 ANVEKMMPEN 366
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU
transferase; 1.85A {Lactobacillus delbrueckii subsp}
Length = 319
Score = 196 bits (501), Expect = 1e-58
Identities = 92/345 (26%), Positives = 148/345 (42%), Gaps = 47/345 (13%)
Query: 178 AIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIH 237
I+T GG PG+N +R + G++ + GI +G+ G ++ PL + V ++
Sbjct: 5 GILTSGGDAPGMNAAVRAVTRVAIANGLE-VFGIRYGFAGLVAGDI--FPLESEDVAHLI 61
Query: 238 LSGGSLLGVSRGAP-----TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRM 292
G+ L +R ++ +++ GI+ + V+GG+G++ GA + R
Sbjct: 62 NVSGTFLYSARYPEFAEEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLT------RH 115
Query: 293 KVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHG-IGIVKLMGRSS 351
+G+P TIDNDI D T G+DTA A AI+ A S H + IV +MGR+
Sbjct: 116 GFNSIGLPGTIDNDIPYTDATIGYDTACMTAMDAIDKIRDTASS--HHRVFIVNVMGRNC 173
Query: 352 GYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIET-KGSAVVCVAEGAGQSLI 410
G IAM +A G D +IPE P+++ + LK E+ K +V VAEG +
Sbjct: 174 GDIAMRVGVACGA-DAIVIPERPYDV---EEIANRLKQAQESGKDHGLVVVAEGVMTA-- 227
Query: 411 KKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILC 470
+++ DV+ +M R SD +L
Sbjct: 228 --------------DQFMAELKKYGD---------FDVRANVLGHMQRGGTPTVSDRVLA 264
Query: 471 TVLGQNAVHGAFAGFSGITVGLCNTHYAYFPIPEVISYPRAVDPN 515
+ LG AVH G G+ VG+ N I ++ D +
Sbjct: 265 SKLGSEAVHLLLEGKGGLAVGIENGKVTSHDILDLFDESHRGDYD 309
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP;
2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Length = 320
Score = 196 bits (501), Expect = 1e-58
Identities = 87/348 (25%), Positives = 153/348 (43%), Gaps = 48/348 (13%)
Query: 178 AIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIH 237
++T GG PG+N IR +V + G++ ++GI GY G + + + L R V ++
Sbjct: 6 GVLTSGGDAPGMNAAIRGVVRSALTEGLE-VMGIYDGYLGLYEDRM--VQLDRYSVSDMI 62
Query: 238 LSGGSLLGVSRGAP-----TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRM 292
GG+ LG +R + ++++++RGI+ L V+GG+G++ GA + M
Sbjct: 63 NRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLT------EM 116
Query: 293 KVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHG-IGIVKLMGRSS 351
+G+P TIDNDI D T GF TA+ AI+ + S H I +V++MGR
Sbjct: 117 GFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSS--HQRISVVEVMGRYC 174
Query: 352 GYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIET-KGSAVVCVAEGAGQSLI 410
G + + A++A G + ++PE F+ ++ +K I K A+V + E
Sbjct: 175 GDLTLAAAIAGGC-EFVVVPEVEFSR---EDLVNEIKAGIAKGKKHAIVAITEHMCDV-- 228
Query: 411 KKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILC 470
++ I++ET + + ++ R D IL
Sbjct: 229 --------------DELAHFIEKET---------GRETRATVLGHIQRGGSPVPYDRILA 265
Query: 471 TVLGQNAVHGAFAGFSGITVGLCNTHYAYFPIPEVISYPRAVDPNSRM 518
+ +G A+ AG+ G VG+ N + I + I +
Sbjct: 266 SRMGAYAIDLLLAGYGGRCVGIQNEQLVHHDIIDAIENMKRP-FKGDW 312
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP;
3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Length = 762
Score = 182 bits (463), Expect = 8e-50
Identities = 75/379 (19%), Positives = 134/379 (35%), Gaps = 45/379 (11%)
Query: 150 RDCTWVEQWVH-RAGPREEIYFKPEEVKA-AIVTCGGLCPGLNDVIRHIVITLEIYGVKN 207
R +++ W + A++ G G+N +R V I G +
Sbjct: 374 RGRSFMNNWEVYKLLAHIRPPAPKSGSYTVAVMNVGAPAAGMNAAVRSTVRIGLIQGNR- 432
Query: 208 IVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP--TVSEIVDSMEERGI 265
++ + G+ G ++ V GGS LG R P + +I ++ + I
Sbjct: 433 VLVVHDGFEGPAKGQI--EEAGWSYVGGWTGQGGSKLGSKRTLPKKSFEQISANITKFNI 490
Query: 266 NMLFVLGGNGTHAGANAIHNECRK-RRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQ 324
L ++GG + G + ++ + + V +P T+ N++ D + G DTA+
Sbjct: 491 QGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALNTIC 550
Query: 325 RAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVL 384
+ A + I++ MG GY+A A LA+G D I E PF + +
Sbjct: 551 TTCDRIKQSAAGTKRRVFIIETMGGYCGYLATMAGLAAGA-DAAYIFEEPFTIRDLQANV 609
Query: 385 RHLKYLIET-KGSAVVCVAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIG 443
HL ++T +V E + TD N+ +E K F
Sbjct: 610 EHLVQKMKTTVKRGLVLRNEKCN-----ENYTTDFIFNL--------YSEEGKGIF---- 652
Query: 444 VPIDVKYI---------DPTYM--IRACR--ANASDGIL--CTVLGQNAVHGAFAGFSGI 488
D + PT A + A A + + +N A SG
Sbjct: 653 ---DSRKNVLGHMQQGGSPTPFDRNFATKMGAKAMNWMAGKIKESYRNGRIFANTPDSGC 709
Query: 489 TVGLCNTHYAYFPIPEVIS 507
+G+ + P+ E+ +
Sbjct: 710 VLGMRKRALVFQPVTELQN 728
Score = 179 bits (457), Expect = 5e-49
Identities = 83/365 (22%), Positives = 143/365 (39%), Gaps = 51/365 (13%)
Query: 178 AIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIH 237
A++T GG G+N +R +V G + + + GY+G D + + V +
Sbjct: 19 AVLTSGGDAQGMNAAVRAVVRVGIFTGAR-VFFVHEGYQGLVDGGDHIREATWESVSMML 77
Query: 238 LSGGSLLGVSRGAP-----TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNEC----- 287
GG+++G +R ++ +RGI L V+GG+G+ GA+ +E
Sbjct: 78 QLGGTVIGSARCKDFREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLS 137
Query: 288 ------------RKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAH 335
R + +VG+ +IDND D T G D+A+ ++ I
Sbjct: 138 DLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCGTDMTIGTDSALHRITEIVD--AITTT 195
Query: 336 SAYHG-IGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIET- 393
+ H ++++MGR GY+A+ SL+ G D IPE P + + + + R L
Sbjct: 196 AQSHQRTFVLEVMGRHCGYLALVTSLSCGA-DWVFIPECPPDDNWEDHLCRRLSETRTRG 254
Query: 394 KGSAVVCVAEGAGQSLIKKTNATDASGNIVLGD-VGVLIQQETKKYFKEIGVPIDVKYID 452
++ VAEGA D +G + + V L+ + D +
Sbjct: 255 SRLNIIIVAEGAI----------DRNGKPITSEGVKDLVVRRLG---------YDTRVTV 295
Query: 453 PTYMIRACRANASDGILCTVLGQNAVHGAFAGFSGIT---VGLCNTHYAYFPIPEVISYP 509
++ R +A D IL + +G AV G V L P+ E +
Sbjct: 296 LGHVQRGGTPSAFDRILGSRMGVEAVMALLEGTPDTPACVVSLSGNQAVRLPLMECVQVT 355
Query: 510 RAVDP 514
+ V
Sbjct: 356 KDVTK 360
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 766
Score = 179 bits (456), Expect = 6e-49
Identities = 69/370 (18%), Positives = 127/370 (34%), Gaps = 37/370 (10%)
Query: 150 RDCTWVEQWVH-----RAGPREEIYFKPEEVKAAIVTCGGLCPGLNDVIRHIVITLEIYG 204
RD ++E + A E K + +K AIV G G+N + + G
Sbjct: 364 RDTEFIEHLNNFMAINSADHNEPKLPKDKRLKIAIVNVGAPAGGINSAVYSMATYCMSQG 423
Query: 205 VKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSE---IVDSME 261
+ I G+ G E L+ K + GGS +G +R P ++ I +
Sbjct: 424 HR-PYAIYNGWSGLARHESVR-SLNWKDMLGWQSRGGSEIGTNRVTPEEADLGMIAYYFQ 481
Query: 262 ERGINMLFVLGGNGTHAGANAIHNECRK-RRMKVAVVGVPKTIDNDILLMDKTFGFDTAV 320
+ + L ++GG + + ++ +V +P T+ N++ + + G DTA+
Sbjct: 482 KYEFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSNNVPGTEYSLGSDTAL 541
Query: 321 EEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGP 380
+ A S +V G +SGY+A +ASLA G + +PE +L
Sbjct: 542 NALMEYCDVVKQSASSTRGRAFVVDCQGGNSGYLATYASLAVGA-QVSYVPEEGISLEQL 600
Query: 381 NGVLRHLKYLIET-----KGSAVVCVAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQET 435
+ + +L E + ++ + AS + + +I E
Sbjct: 601 SEDIEYLAQSFEKAEGRGRFGKLILKSTN-------------ASKALSATKLAEVITAEA 647
Query: 436 KKYFKEIGVPIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHGAFAGFSGITVGLCNT 495
F D K P ++ + + D T + AV + I
Sbjct: 648 DGRF-------DAKPAYPGHVQQGGLPSPIDRTRATRMAIKAVGFIKDNQAAIAEARAAE 700
Query: 496 HYAYFPIPEV 505
+
Sbjct: 701 ENFNADDKTI 710
Score = 169 bits (430), Expect = 2e-45
Identities = 83/369 (22%), Positives = 146/369 (39%), Gaps = 57/369 (15%)
Query: 178 AIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEM-PLSRKVVQNI 236
A++T GG PG+N +R IV + G + + GY G + + V+
Sbjct: 7 AVMTSGGDAPGMNSNVRAIVRSAIFKGCR-AFVVMEGYEGLVRGGPEYIKEFHWEDVRGW 65
Query: 237 HLSGGSLLGVSRGAP-----TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNEC---- 287
GG+ +G +R + E G++ L V GG+G+ GA+ +E
Sbjct: 66 SAEGGTNIGTARCMEFKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLI 125
Query: 288 -------------RKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEA 334
+R + + G +IDND+ D T G +A++ +AI+ Y+EA
Sbjct: 126 EELLKTNRISNEQYERMKHLNICGTVGSIDNDMSTTDATIGAYSALDRICKAID--YVEA 183
Query: 335 HSAYHG-IGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHG-PNGVLRHLKYLIE 392
+ H +V++MGR+ G++A+ A +A+ D IPE P + + +
Sbjct: 184 TANSHSRAFVVEVMGRNCGWLALLAGIATSA-DYIFIPEKPATSSEWQDQMCDIVSKHRS 242
Query: 393 T-KGSAVVCVAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYI 451
K + +V VAEGA + + + +D V ++ +D +
Sbjct: 243 RGKRTTIVVVAEGAIAADLTPISPSD---------VHKVLVDRLG---------LDTR-- 282
Query: 452 DPT---YMIRACRANASDGILCTVLGQNAVHGAFAGFSGIT---VGLCNTHYAYFPIPEV 505
T ++ R A A D IL T+ G AV+ + + P+ E
Sbjct: 283 -ITTLGHVQRGGTAVAYDRILATLQGLEAVNAVLESTPDTPSPLIAVNENKIVRKPLMES 341
Query: 506 ISYPRAVDP 514
+ +AV
Sbjct: 342 VKLTKAVAE 350
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 989
Score = 178 bits (452), Expect = 6e-48
Identities = 92/418 (22%), Positives = 157/418 (37%), Gaps = 60/418 (14%)
Query: 131 LLKVINFSSPTSAGAECIDRDCTWVEQWVHRAGPREEIYFKPEEVKA---AIVTCGGLCP 187
+ VI+FSS S ++ I ++ + E AI+T GG P
Sbjct: 164 MGDVISFSSYPSLNSKKITSPDFFLHPKKEVRSEESIVEQVKSEEGKKKIAIITSGGDAP 223
Query: 188 GLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVS 247
G+N +R + YG K + GY G L + V+ + GG+++G +
Sbjct: 224 GMNAAVRAVTRAGIFYGCK-VYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGGTIIGTA 282
Query: 248 RGAP-----TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNEC--------------- 287
R + +M GI+ L V GG+G+ GA+ E
Sbjct: 283 RCKEFRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITK 342
Query: 288 --RKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHG-IGIV 344
+ + +VG+ +IDND+ D T G +++E ++ YI+A +A H +V
Sbjct: 343 EQYETHRNLTIVGLVGSIDNDMCGTDSTIGAYSSLERIIELVD--YIDATAASHSRAFVV 400
Query: 345 KLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIET-----KGSAVV 399
++MGR G++ + + +A+G D IPE P + + LK + + V
Sbjct: 401 EVMGRHCGWLGLMSGIATGA-DYIFIPERPPS---ESNWKDDLKKVCLRHREKGRRKTTV 456
Query: 400 CVAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRA 459
VAEGA D N + + + E +D + ++ R
Sbjct: 457 IVAEGAI----------DDQLNPITSEEVKDVLVEIG---------LDTRITRLGHVQRG 497
Query: 460 CRANASDGILCTVLGQNAVHGAFAGFSGIT---VGLCNTHYAYFPIPEVISYPRAVDP 514
A D L TV G +AV I + + P+ E ++ + V
Sbjct: 498 GAPCAFDRFLATVQGVDAVRAVLESTPAIPSPVISILENKIVRQPLVESVAQTKTVSA 555
Score = 176 bits (448), Expect = 2e-47
Identities = 53/367 (14%), Positives = 115/367 (31%), Gaps = 33/367 (8%)
Query: 161 RAGPREEIYFKPEEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCD 220
+ + + + AI+ G LN R + G + + I G+ G
Sbjct: 585 KYDDGSYLVPESSRLNIAIIHVGAPTSALNPATRVATLNSLAKGHR-VFAIRNGFAGLIR 643
Query: 221 KELTEMPLSRKVVQNIHLSGGSLLGVSRGAPT--VSEIVDSMEERGINMLFVLGGNGTHA 278
L+ V++ H +GGS +G +R P+ + + ++ + L ++GG
Sbjct: 644 HGAVR-ELNWIDVEDWHNTGGSEIGTNRSLPSDDMGTVAYYFQQYKFDGLIIIGGFEAFT 702
Query: 279 GANAIHNECRKRR-MKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSA 337
+ + + + +P T+ N++ + + G DT + ++ A ++
Sbjct: 703 ALYELDAARAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCLNTLSGYCDAVKQSASAS 762
Query: 338 YHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIET---- 393
+V++ G SGY+A +A L +G PE+P NL + L E
Sbjct: 763 RRRTFVVEVQGGYSGYLASYAGLITGA-LAVYTPENPINLQTVQEDIELLTRTYEEDDGK 821
Query: 394 -KGSAVVCVAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVP-IDVKYI 451
+ + E A V E G + +
Sbjct: 822 NRSGKIFIHNEKAS---------------------KVYTTDLIAAIIGEAGKGRFESRTA 860
Query: 452 DPTYMIRACRANASDGILCTVLGQNAVHGAFAGFSGITVGLCNTHYAYFPIPEVISYPRA 511
P ++ + ++ D + L + + + +
Sbjct: 861 VPGHVQQGKSPSSIDRVNACRLAIKCCNFIEDANFQVKHNANLSADERHLRFFYDDGVKT 920
Query: 512 VDPNSRM 518
+ +
Sbjct: 921 SAVSGKS 927
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 787
Score = 175 bits (447), Expect = 1e-47
Identities = 58/360 (16%), Positives = 114/360 (31%), Gaps = 32/360 (8%)
Query: 164 PREEIYFKPEEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKEL 223
E+ + + IV G LN R + +G K I G+ G
Sbjct: 383 DGSELLPVSDRLNIGIVHVGAPSAALNAATRAATLYCLSHGHK-PYAIMNGFSGLIQTGE 441
Query: 224 TEMPLSRKVVQNIHLSGGSLLGVSRGAPT--VSEIVDSMEERGINMLFVLGGNGTHAGAN 281
+ LS V+N H GGS +G +R + + I ++ ++ L +LGG
Sbjct: 442 VK-ELSWIDVENWHNLGGSEIGTNRSVASEDLGTIAYYFQKNKLDGLIILGGFEGFRSLK 500
Query: 282 AIHNECRK-RRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHG 340
+ + + + + +P T+ N++ + + G DT + + A +
Sbjct: 501 QLRDGRTQHPIFNIPMCLIPATVSNNVPGTEYSLGVDTCLNALVNYTDDIKQSASATRRR 560
Query: 341 IGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIET-----KG 395
+ + ++ G SGYIA L +G PE +L + LK +
Sbjct: 561 VFVCEVQGGHSGYIASFTGLITGA-VSVYTPEKKIDLASIREDITLLKENFRHDKGENRN 619
Query: 396 SAVVCVAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTY 455
++ E AS + +I + +K F V+ P +
Sbjct: 620 GKLLVRNEQ-------------ASSVYSTQLLADIISEASKGKF-------GVRTAIPGH 659
Query: 456 MIRACRANASDGILCTVLGQNAVHGAFAG-FSGITVGLCNTHYAYFPIPEVISYPRAVDP 514
+ + ++ D + + + + F V+
Sbjct: 660 VQQGGVPSSKDRVTASRFAVKCIKFIEQWNKKNEASPNTDAKVLRFKFDTHGEKVPTVEH 719
Score = 174 bits (444), Expect = 3e-47
Identities = 87/371 (23%), Positives = 150/371 (40%), Gaps = 63/371 (16%)
Query: 178 AIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIH 237
A++T GG PG+N +R +V T +G + + GY G ++ + V+
Sbjct: 9 AVMTSGGDSPGMNAAVRAVVRTGIHFGCD-VFAVYEGYEGLLRGGKYLKKMAWEDVRGWL 67
Query: 238 LSGGSLLGVSRGAP-----TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNEC----- 287
GG+L+G +R + ++ +GI+ L V GG+G+ GA+ +E
Sbjct: 68 SEGGTLIGTARSMEFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVD 127
Query: 288 ------------RKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAH 335
+++VG+ +IDND+ D T G +A+E ++ YI+A
Sbjct: 128 ELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSGTDSTIGAYSALERICEMVD--YIDAT 185
Query: 336 SAYHG-IGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIET- 393
+ H +V++MGR G++A+ A +A+G D IPE LK + +
Sbjct: 186 AKSHSRAFVVEVMGRHCGWLALMAGIATGA-DYIFIPERAVPHG---KWQDELKEVCQRH 241
Query: 394 ----KGSAVVCVAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVK 449
+ + + VAEGA D N V + + K E+G +D K
Sbjct: 242 RSKGRRNNTIIVAEGAL----------DDQLNPVTAN-------DVKDALIELG--LDTK 282
Query: 450 YIDPT---YMIRACRANASDGILCTVLGQNAVHG---AFAGFSGITVGLCNTHYAYFPIP 503
T ++ R A A D L T+ G +AV +G+ P+
Sbjct: 283 ---VTILGHVQRGGTAVAHDRWLATLQGVDAVKAVLEFTPETPSPLIGILENKIIRMPLV 339
Query: 504 EVISYPRAVDP 514
E + ++V
Sbjct: 340 ESVKLTKSVAT 350
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 941
Score = 173 bits (441), Expect = 2e-46
Identities = 95/504 (18%), Positives = 176/504 (34%), Gaps = 64/504 (12%)
Query: 50 EISQSARASGLDFNDPDWKSKFQSDFEKRFSLPHITDIFRDATPIPSTFCLRMRTP--VT 107
++ + + + S ++ + +D I S + + +
Sbjct: 50 QLEEDQNNVSIQLILDPEHAASVSQIDQNIRNLTRSLYRKDWRSIQSNIAFKSSSLSKLV 109
Query: 108 EDFADGYPSDEKWHGYINNND----RVLLKVINFSSPTSAGAECIDRDCTWVEQWVHRAG 163
+ DG ++ I+ + L +I FS + A V +
Sbjct: 110 KLLKDGGHPVQQSPNEISPFEVYTVDPLGSLIGFSGFKNPFAVNERSLLPKVSEEKAYRA 169
Query: 164 PREEIYFKPEEVKA-AIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKE 222
+ K ++T GG PG+N +R +V G K + I GY G
Sbjct: 170 EDDSEKLLNPVRKTIGVMTSGGDSPGMNPFVRAVVRAGIYKGCK-VFCIHEGYEGLVRGG 228
Query: 223 LTEM-PLSRKVVQNIHLSGGSLLGVSRGAP-----TVSEIVDSMEERGINMLFVLGGNGT 276
+ V+ + GG+ +G +R + +M + GI+ L V GG+G+
Sbjct: 229 EKYIKETQWHDVRGWLVEGGTNIGTARCKEFRERSGRLKACKNMIDMGIDALIVCGGDGS 288
Query: 277 HAGANAIHNEC-----------------RKRRMKVAVVGVPKTIDNDILLMDKTFGFDTA 319
GA+ +E + + G +IDND+ D T G ++
Sbjct: 289 LTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSSTDATIGAFSS 348
Query: 320 VEEAQRAINSAYIEAHSAYHG-IGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLH 378
++ RAI+ YI+A + H IV++MGR G++ + A LA+ D LIPE P +
Sbjct: 349 LDRICRAID--YIDATANSHSRAFIVEVMGRHCGWLGLLAGLATSA-DYILIPEKPASSR 405
Query: 379 G-PNGVLRHLKYLIET-KGSAVVCVAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETK 436
+ + + K +V VAEGA + + + V ++
Sbjct: 406 EWQDQMCDIVGKHRARGKRKTIVIVAEGAISNDLSPISCDQ---------VKDVLVNRLG 456
Query: 437 KYFKEIGVPIDVKYIDPT---YMIRACRANASDGILCTVLGQNAVHGAFAGFSGIT---V 490
+D + T ++ R A A D I T+ G AV+ + +
Sbjct: 457 ---------LDTR---VTTLGHVQRGGTAVAFDRIYATLQGVEAVNAVLECDADTPSPMI 504
Query: 491 GLCNTHYAYFPIPEVISYPRAVDP 514
+ P+ + + + V
Sbjct: 505 AIKEDQITRVPLVDAVELTQQVAK 528
Score = 172 bits (439), Expect = 3e-46
Identities = 54/243 (22%), Positives = 96/243 (39%), Gaps = 22/243 (9%)
Query: 178 AIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIH 237
AI+ G G+N + + G I G+ G E ++ ++
Sbjct: 575 AIINVGAPAGGMNSAVYSMATYCMSRGHV-PYAIHNGFSGLARHESVR-SINWLDIEGWG 632
Query: 238 LSGGSLLGVSRGAPTVSE---IVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRR-MK 293
GGS +G +R P ++ I E+ G + L ++GG + + ++
Sbjct: 633 SLGGSEIGTNRTLPNDADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLR 692
Query: 294 VAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAIN----SAYIEAHSAYHG-IGIVKLMG 348
+ +V +P TI N++ + + G DT + + SA +A + +V++ G
Sbjct: 693 IPLVLIPATISNNVPGTEYSLGSDTCLNSFMEYCDVIKQSA-----AATRNRVFVVEVQG 747
Query: 349 RSSGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIET-----KGSAVVCVAE 403
+SGYIA HA LA G I +PE +L + LK K ++ +E
Sbjct: 748 GNSGYIATHAQLACGA-QISYVPEEGISLAQLEMDINSLKESFANDQGKTKSGRLILKSE 806
Query: 404 GAG 406
A
Sbjct: 807 NAS 809
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 5e-07
Identities = 63/449 (14%), Positives = 122/449 (27%), Gaps = 120/449 (26%)
Query: 60 LDF--NDPDWKSK-----FQSDFEKRFSLPHITD-------------IFRDATPIPSTF- 98
+DF + ++ K F+ F F + D I + T
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 99 ---CLRMR-TPVTEDFADGYPSDEKWHGYINNNDRVLLKVINFSSPTSAGAECIDRDCTW 154
L + + + F + + ++ + + S T E DR
Sbjct: 67 LFWTLLSKQEEMVQKFVEE--VLRINYKFL--MSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 155 VEQWVHRAGPREEIYFKPEEVKAA---------IVTCGGLCPG---L-NDVIRHIVITLE 201
+ + R + Y +++ A ++ G L G + DV + +
Sbjct: 123 NQVFAKYNVSRLQPY---LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 202 IYGVKNIVGIPFGYRGFCDKELTEM--PLSRKVVQNIHLSGGSLLGVSRGAPTVSEIVDS 259
+ I + + + EM L ++ N S S + +
Sbjct: 180 MDF--KIFWLNLKNC-NSPETVLEMLQKLLYQIDPNWT----SRSDHSSNIKLRIHSIQA 232
Query: 260 ------MEERGINMLFVLGG--NGTHAGANAIHNECR----KRRMKVA-VVGVPKTIDND 306
+ N L VL N NA + C+ R +V + T
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKA--WNAFNLSCKILLTTRFKQVTDFLSAATTT--H 288
Query: 307 ILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQID 366
I L + + +++ Y+ L +
Sbjct: 289 ISLDHHSMTLT---PDEVKSLLLKYL-------DCRPQDL--PRE--VLTTNPRR----- 329
Query: 367 ICLIPESPFNLHGPNGVLRHLKYLIETKGSAVVCVAEGAGQSLIKKTNATDASGNIVLGD 426
+ +I ES + + K++ + K T ++S
Sbjct: 330 LSIIAES---IRDGLATWDNWKHV-----------------NCDKLTTIIESS------- 362
Query: 427 VGVLIQQETKKYFKEIGV-PIDVKYIDPT 454
+ VL E +K F + V P I PT
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAH-I-PT 389
Score = 47.9 bits (113), Expect = 7e-06
Identities = 72/553 (13%), Positives = 143/553 (25%), Gaps = 211/553 (38%)
Query: 27 GFS-SVLVQS-------KKNHPSGI-------CRSAADEI---------------SQSAR 56
G + + + I C S + S+S
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 57 ASGLDFNDPDWKSKFQSDFEKRFSLPH---ITDIFRDATPIPSTFCLRMRTPVT---EDF 110
+S + +++ + + + + + ++A + F L + +T +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSK-PYENCLLVLLNVQNAKAW-NAFNLSCKILLTTRFKQV 277
Query: 111 ADGYPSDEKWHGYINNNDR---------VLLKVINFSS---PTSA-----------GAEC 147
D + H ++++ +LLK ++ P
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 148 IDRDCTWVEQWVHRAGPR-EEI------YFKPEEVKAAIVTCGGLCPGLNDVIRHI-VIT 199
D TW + W H + I +P E + + P HI I
Sbjct: 338 RDGLATW-DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-SVFP--PSA--HIPTIL 391
Query: 200 LEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAPTVSEIVD- 258
L + + D +++ VV +H SL+ + + I
Sbjct: 392 LSLI--------------WFDVIKSDV---MVVVNKLHKY--SLV-EKQPKESTISIPSI 431
Query: 259 SMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDT 318
+E + A+H R + V +PKT D+D L+
Sbjct: 432 YLELK-----------VKLENEYALH-----RSI-VDHYNIPKTFDSDDLIPPYLDQ--- 471
Query: 319 AVEEAQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLH 378
Y +H +H + ++ L +
Sbjct: 472 ------------YFYSHIGHH----------------LKNIEHPERMT--LFRMVFLDFR 501
Query: 379 GPNGVLRHLKYLIETKGSAVVCVAEGAGQSLIKKTNATDASGNI--VLGDVGVLIQQETK 436
+E K + + A +ASG+I L + K
Sbjct: 502 -----------FLEQK--------------IRHDSTAWNASGSILNTLQQL--------K 528
Query: 437 KYFKEIGVPIDVKYI---DPTYMIRACRANASDGILCTVL------GQNAVHGAFAGFSG 487
Y YI DP Y + ++ +L +N + +
Sbjct: 529 FY---------KPYICDNDPKY----------ERLVNAILDFLPKIEENLICSKYTDL-- 567
Query: 488 ITVGLCNTHYAYF 500
+ + L A F
Sbjct: 568 LRIALMAEDEAIF 580
Score = 40.6 bits (94), Expect = 0.001
Identities = 59/371 (15%), Positives = 103/371 (27%), Gaps = 149/371 (40%)
Query: 2 EALSHTVGPTV-----APLRPKRPLRW-NWNGFSSVLVQSKKNHPSGICRSAADEISQSA 55
E L T P +R W NW D+++
Sbjct: 321 EVL--TTNPRRLSIIAESIR-DGLATWDNWK------------------HVNCDKLTTII 359
Query: 56 RASGLDFNDPDWKSKFQSDFEKRF-SLPHITDIFRDATPIPS-TFCLRMRTPVTEDFADG 113
+S L+ +P ++ K F L +F + IP+ L
Sbjct: 360 ESS-LNVLEPA-------EYRKMFDRLS----VFPPSAHIPTILLSLI------------ 395
Query: 114 YPSDEKWHGYINNNDRVLLKVINFSSPTSAGAECIDRDCTWVEQWVHRAGPREEIYFKPE 173
W I ++ V++ + VE+ P+E P
Sbjct: 396 ------WFDVIKSDVMVVVN------------KLHKYSL--VEKQ-----PKESTISIPS 430
Query: 174 ---EVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVK-----NIVGIP------FGYRGF- 218
E+K N+ H I ++ Y + + + P + + G
Sbjct: 431 IYLELK---------VKLENEYALHRSI-VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 219 -CDKELTE-MPLSRKVVQN-------IHLSGGSLLGVSRGAPTVSE-------IVDSME- 261
+ E E M L R V + I + T+ + I D+
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 262 -ERGINML--FVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDIL---LMDKTFG 315
ER +N + F+ N I ++ D+L LM +
Sbjct: 541 YERLVNAILDFLPK-----IEENLICSKYT-----------------DLLRIALMAEDEA 578
Query: 316 -FDTAVEEAQR 325
F+ A ++ QR
Sbjct: 579 IFEEAHKQVQR 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 3e-04
Identities = 62/445 (13%), Positives = 121/445 (27%), Gaps = 177/445 (39%)
Query: 6 HTVGPTVAPLRPKRPLRWNWNGFSSVLVQS------------KKNHPSGICRSAADEISQ 53
H + + ++ + L+++ K S + R+ +
Sbjct: 102 HALAAKLLQENDTTLVK------TKELIKNYITARIMAKRPFDKKSNSALFRAVGEG--- 152
Query: 54 SARASGLDF----NDPDWKSKFQSDFEKRFSLPHITDIFRDATPIPSTFCLRMRTPVTED 109
+A+ + F N D+ F+ E R D+++ + +
Sbjct: 153 NAQLVAI-FGGQGNTDDY---FE---ELR-------DLYQTYHVLVGDLIKFSA-ETLSE 197
Query: 110 FADGYPSDEKWHGYINNNDRVLLKVINFSSPTSAGAECIDRDCTWVEQWVHRAGPREEIY 169
EK + +N + +W+ +
Sbjct: 198 LIRTTLDAEKVFT----------QGLN------------------ILEWLENPSNTPDKD 229
Query: 170 FKPEEVKAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLS 229
+ + + ++C + G+ + H V+T ++ G P EL
Sbjct: 230 Y----LLSIPISCPLI--GVIQLA-HYVVTAKLLGFT-----P--------GELRS---- 265
Query: 230 RKVVQNIHLSGGSLLGVSRG--APTVSEIVDSMEE------RGINMLFVLGGNGTHA-GA 280
+L G G S+G DS E + I +LF +G A
Sbjct: 266 -------YLKG--ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 281 NAI----------HNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSA 330
++ +NE M +++ + + V++ N +
Sbjct: 317 TSLPPSILEDSLENNEGVPSPM-LSISNLTQE----------------QVQDYVNKTN-S 358
Query: 331 YIEAHSAYHGIGIVKLMGRS----SGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRH 386
++ A I +V G SG P+S L+G N LR
Sbjct: 359 HLPAGKQVE-ISLVN--GAKNLVVSGP-----------------PQS---LYGLNLTLRK 395
Query: 387 LKYLIETKGSAVVCVAEGAGQSLIK 411
K G QS I
Sbjct: 396 AK------------APSGLDQSRIP 408
Score = 39.6 bits (92), Expect = 0.003
Identities = 45/294 (15%), Positives = 93/294 (31%), Gaps = 99/294 (33%)
Query: 34 QSKKNHPSGICRSAADEISQSARASGLDFNDPDWKSKFQSDFEKRFSLPHITDIFRDATP 93
Q + G+ S++A+ +N D F+ + FS I DI + P
Sbjct: 1627 QEQ-----GMGMDLYKT-SKAAQDV---WNRADNH--FKDTYG--FS---ILDIVINN-P 1669
Query: 94 IPSTFC--------LRMRTP--VTEDFADGYPS--------DEKWHGYINNNDRVLLKVI 135
+ T +R + E DG +E Y +++ LL
Sbjct: 1670 VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT 1729
Query: 136 NFSSP----TSAGAECIDRDCTWVEQWVHRAGPREEIYFKPEEVKA--------AIVTCG 183
F+ P A E + + + A A+ +
Sbjct: 1730 QFTQPALTLMEKAA---------FEDL------KSKGLIPADATFAGHSLGEYAALASLA 1774
Query: 184 GLCPGLNDVIRHIV----ITLEI------YGVKN--IVGIPFG--YRGFCDKELTEMPLS 229
+ + ++ +V +T+++ G N ++ I G F + L
Sbjct: 1775 DVMS-IESLVE-VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL------ 1826
Query: 230 RKVVQNIHLSGGSLL---------------GVSRGAPTVSEIVDSMEERGINML 268
+ VV+ + G L+ G R TV+ +++ ++ + I+++
Sbjct: 1827 QYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDII 1880
Score = 39.3 bits (91), Expect = 0.004
Identities = 48/314 (15%), Positives = 90/314 (28%), Gaps = 97/314 (30%)
Query: 271 LGGNGTHAGANAIHNECRKRRMKV-----------AVVGVPKTIDNDILLMDKT------ 313
L GN HA A + E +K + P ++ L
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 314 ----FG----FDTAVEEAQ------RAINSAYIEAHSA----------------YHGIGI 343
FG D EE + + I+ + G+ I
Sbjct: 156 LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 344 VK-LMGRSS----GYIAMHASLASGQIDICLI------------PESPFNLHGP-NGVLR 385
++ L S+ Y+ + S + I +I +P L G
Sbjct: 216 LEWLENPSNTPDKDYLL--SIPISCPL-IGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 386 HLKYLIETKGSAVVCVAEGAGQSLIKKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVP 445
H + L+ +AV + +S + A VL +GV + + +P
Sbjct: 273 HSQGLV----TAVAIAETDSWESFFV--SVRKAIT--VLFFIGVRCYE----AYPNTSLP 320
Query: 446 IDV--KYID-----PTYMIRACRANASDGILCTVLGQNAVHGAFAGFSGITVGLCNTHYA 498
+ ++ P+ M+ + + + V N+ H + + L N
Sbjct: 321 PSILEDSLENNEGVPSPML-SISNLTQEQVQDYVNKTNS-HLPAG--KQVEISLVNGAKN 376
Query: 499 YFPIPEVIS-YPRA 511
V+S P++
Sbjct: 377 L-----VVSGPPQS 385
Score = 34.6 bits (79), Expect = 0.11
Identities = 51/317 (16%), Positives = 86/317 (27%), Gaps = 115/317 (36%)
Query: 226 MPL--SRKVVQNI------HLS---GGSLLGVSRGAPTVSEIV------DSMEERGINML 268
M L + K Q++ H G S+L + P I + E M+
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 269 FVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAIN 328
F +G I E + T ++ L+ T + Q A+
Sbjct: 1693 FETIVDG-KLKTEKIFKEINEHSTSY-------TFRSEKGLLSAT-------QFTQPAL- 1736
Query: 329 SAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLH--GPNGVLRH 386
+ + +S G I A+ A G H G
Sbjct: 1737 --------TLMEKAAFEDL-KSKGLIPADATFA-G--------------HSLG------- 1765
Query: 387 LKYLIETKGSAVVCVAEGAGQSLIKKTNATDASGNIVLGDV---GVLIQQETKKYFKEIG 443
+Y +A+ +A+ + + + + V G+ +Q
Sbjct: 1766 -EY------AALASLAD----VM----SIESL---VEV--VFYRGMTMQVA--------- 1796
Query: 444 VPIDVKYIDPTYMIRACRANASDGILCTVLGQNAVHGAFAGFSGITVGLC---NTHYAYF 500
VP D MI A G + Q A+ T L N +
Sbjct: 1797 VPRDELGRSNYGMI-AIN----PGRVAASFSQEALQYVVERVGKRTGWLVEIVN-----Y 1846
Query: 501 PIPE---VIS-YPRAVD 513
+ V + RA+D
Sbjct: 1847 NVENQQYVAAGDLRALD 1863
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate
dehydrogenase, selenocysteine, molybdopterin, MGD,
iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A
{Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Length = 977
Score = 32.2 bits (73), Expect = 0.49
Identities = 16/109 (14%), Positives = 31/109 (28%), Gaps = 1/109 (0%)
Query: 190 NDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRG 249
I + + + + K S +++ + G L G
Sbjct: 433 RASIPTYEEYTKKFTPVSKDPQSANWWSNFPKYSASYIKSMWPDADLNEAYGYLPKGEDG 492
Query: 250 AP-TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVV 297
+ + D M + I F G N +GAN+ ++ V
Sbjct: 493 KDYSWLTLFDDMFQGKIKGFFAWGQNPACSGANSNKTREALTKLDWMVN 541
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S;
oxidoreductase, selenium, selenocysteine, seCys,
molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli}
SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Length = 1015
Score = 31.8 bits (72), Expect = 0.77
Identities = 17/110 (15%), Positives = 30/110 (27%), Gaps = 2/110 (1%)
Query: 190 NDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIH--LSGGSLLGVS 247
++ + LE K + Y K + S G L
Sbjct: 472 SEKQVDLQSYLEANTPKATLADQVNYWSNYPKFFVSLMKSFYGDAAQKENNWGYDWLPKW 531
Query: 248 RGAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVV 297
V + + M+E + F G N + + ++K VV
Sbjct: 532 DQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDKNKVVSCLSKLKYMVV 581
>1pc6_A Protein NINB; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG; 2.51A {Enterobacteria phage lambda} SCOP:
d.262.1.1
Length = 146
Score = 30.0 bits (67), Expect = 0.99
Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 13 APLRPKRPLRWNWNGFSSVLVQSKKNHPSGICRSAADEISQSARASGLDFNDPDWKSKFQ 72
P +P+ + L Q++K ++S+ G + WK F
Sbjct: 24 ILPDPTKPIVVTIQERNRSLDQNRKLWA--CLG----DVSRQVEWHGRWLDAESWKCVFT 77
Query: 73 SDFEKRFSLPHI 84
+ +++ +P++
Sbjct: 78 AALKQQDVVPNL 89
>1hcf_A Neurotrophin-4; transferase/hormone, complex(transferase/growth
factor), neurotrophin-4/5, TRKB receptor, NGF-beta
superfamily; 2.7A {Homo sapiens} SCOP: g.17.1.3 PDB:
1b98_A 1b8m_B
Length = 130
Score = 29.8 bits (66), Expect = 1.1
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 411 KKTNATDASGNIV--LGDVGVLIQQETKKYFKEIG-VPIDVKYIDPTYMIRACRA 462
+ A D G V LG+V ++YF E + + P CR
Sbjct: 26 DRRTAVDLRGREVEVLGEVPAAGGSPLRQYFFETRCKADNAEEGGPGAGGGGCRG 80
>2r5f_A Transcriptional regulator, putative; transcription regulator,
sugar-binding domain, structural GE PFAM04198, PSI-2;
2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Length = 264
Score = 30.2 bits (68), Expect = 1.5
Identities = 34/192 (17%), Positives = 65/192 (33%), Gaps = 20/192 (10%)
Query: 201 EIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNI--HLSGGSLLGVSRGAPTVSEIVD 258
++YG++ ++ + D+E + + + LS +G+S + T+ +V
Sbjct: 18 KMYGIRQVIVVEATEPD--DEESIKQAIGSAAAHYLETSLSAQDHIGISSWSSTIRAMVS 75
Query: 259 SMEE---RGINMLFV-LGGNGTHAGANAIHNECRKRRMKVAVVGVPKTIDNDILLMDKTF 314
M + V L G + GA +R+ + + + +
Sbjct: 76 HMHPQPGKQSAQEVVQLLGGVGNKGAFEATLLT--QRLATLLNCPAFLLPSQSIEQSVES 133
Query: 315 GFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMG--RSSGYI---AMHASLASGQI--DI 367
E + + + A GIG ++ R+SG M LA DI
Sbjct: 134 KQRIVEMEEVKEVLHRFDSITLAIVGIGELEPSQLLRNSGNYYTEDMLRVLAERGAVGDI 193
Query: 368 CLIPESPFNLHG 379
CL F+ G
Sbjct: 194 CLR---YFDAQG 202
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix,
trasnscription regulator, STR genomics, PSI-2, protein
structure initiative; 2.01A {Silicibacter pomeroyi
dss-3}
Length = 152
Score = 29.3 bits (66), Expect = 1.5
Identities = 7/60 (11%), Positives = 22/60 (36%), Gaps = 12/60 (20%)
Query: 215 YRGFCDKELTEMPLSR---KVVQNIHLSGGS-------LLGVSRGAPTVSEIVDSMEERG 264
++ ++ +++ + L+ G+ L + R +S I+ ++ G
Sbjct: 25 ITAAVERGTLREGVTVGQRAILEGLSLTPGATAPQLGAALQMKR--QYISRILQEVQRAG 82
>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics,
protein structure initiative; 2.60A {Pseudomonas
aeruginosa}
Length = 325
Score = 30.4 bits (69), Expect = 1.5
Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 9/101 (8%)
Query: 180 VTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLS 239
+ G ++D I + I G +GI + + E K +
Sbjct: 217 LKKGIDST-IDDYAEAIEYVMNIVGEDA-IGIGTDFTQGHGHDFFEWLTHDKGYARRLTN 274
Query: 240 GGSLLGVSRGAPTVSE---IVDSMEERGIN---MLFVLGGN 274
G ++ G TV E + +++ +RG+ + V+G N
Sbjct: 275 FGKIVNP-LGIRTVGEFPNLTETLLKRGMPERVVRKVMGEN 314
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin,
fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A
{Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Length = 315
Score = 30.2 bits (68), Expect = 1.7
Identities = 11/56 (19%), Positives = 22/56 (39%)
Query: 149 DRDCTWVEQWVHRAGPREEIYFKPEEVKAAIVTCGGLCPGLNDVIRHIVITLEIYG 204
D + ++W ++++ E++ I+ G N I I L+IY
Sbjct: 72 ADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYS 127
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium
difficile}
Length = 189
Score = 29.1 bits (65), Expect = 2.8
Identities = 5/22 (22%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 243 LLGVSRGAPTVSEIVDSMEERG 264
+G S+ ++ +V ++E+ G
Sbjct: 66 KMGTSKQ--NINRLVANLEKNG 85
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB:
3a5c_H* 3a5d_H 3j0j_H*
Length = 109
Score = 27.0 bits (60), Expect = 6.9
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 9/43 (20%)
Query: 292 MKVAVVGVPKTIDNDILLMDKTFGFDTAV----EEAQRAINSA 330
+++AV+ D + + G + EEAQ + +
Sbjct: 4 VRMAVIA-----DPETAQGFRLAGLEGYGASSAEEAQSLLETL 41
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics,
joint center for struc genomics, JCSG, protein structure
initiative; 1.75A {Parabacteroides distasonis}
Length = 283
Score = 28.0 bits (62), Expect = 8.4
Identities = 12/117 (10%), Positives = 27/117 (23%), Gaps = 15/117 (12%)
Query: 355 AMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVVCVAEGAGQSLIKKTN 414
A L + DI ++P G+ L +V
Sbjct: 45 LAQALLIKQETDIAVLPMINAANLYNKGIKIKLAGCPIWGTLYLVEKTPLKE-----PAL 99
Query: 415 ATDASGNIVLGDVGVLIQQETKKYFKEIGVP--IDVKYIDPTYMIRACRANASDGIL 469
+G T+ Y + ++ + + + A + +
Sbjct: 100 YVFGNGTT--------PDILTRYYLGRQRLDYPLNYAFNTAGEITQGILAGKVNRAV 148
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.424
Gapped
Lambda K H
0.267 0.0874 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,575,959
Number of extensions: 543446
Number of successful extensions: 1736
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1627
Number of HSP's successfully gapped: 50
Length of query: 532
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 434
Effective length of database: 3,965,535
Effective search space: 1721042190
Effective search space used: 1721042190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.6 bits)