RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 009559
(532 letters)
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 319
Score = 201 bits (511), Expect = 9e-61
Identities = 88/345 (25%), Positives = 149/345 (43%), Gaps = 43/345 (12%)
Query: 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQN 235
+ ++T GG PG+N IR +V +GV+ + G+ GY G + L V +
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVRKAIYHGVE-VYGVYHGYAGLIAGNI--KKLEVGDVGD 59
Query: 236 IHLSGGSLLGVSRGAPT-----VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKR 290
I GG++L +R + ++ +++ GI L V+GG+G++ GA +
Sbjct: 60 IIHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEHGFP- 118
Query: 291 RMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRS 350
VGVP TIDNDI D T GFDTA+ AI+ + +++ ++++MGR
Sbjct: 119 -----CVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIR-DTATSHERTYVIEVMGRH 172
Query: 351 SGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVVCVAEGAGQSLI 410
+G IA+ + LA G + LIPE+ ++++ L+ K +++ VAEG G +
Sbjct: 173 AGDIALWSGLAGGA-ETILIPEADYDMNDVIARLKRGHE--RGKKHSIIIVAEGVGSGVD 229
Query: 411 KKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILC 470
+A+G + + ++ R A D +L
Sbjct: 230 FGRQIQEATG-------------------------FETRVTVLGHVQRGGSPTAFDRVLA 264
Query: 471 TVLGQNAVHGAFAGFSGITVGLCNTHYAYFPIPEVISYPRAVDPN 515
+ LG AV G G VG+ N I E ++ +D
Sbjct: 265 SRLGARAVELLLEGKGGRCVGIQNNQLVDHDIAEALANKHTIDQR 309
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent
phosphofructokinase {Lyme disease spirochete (Borrelia
burgdorferi) [TaxId: 139]}
Length = 550
Score = 205 bits (522), Expect = 6e-60
Identities = 73/402 (18%), Positives = 133/402 (33%), Gaps = 79/402 (19%)
Query: 176 KAAIVTCGGLCPGLNDVIRHIVITL-EIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQ 234
I+ GG PG ++VI + + + + G G G + + + L+ ++
Sbjct: 71 NIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDK--IELTESLIN 128
Query: 235 NIHLSGGSLLGVSRGAPT-----VSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRK 289
+ +GG + S ++ + +E +N + ++GG+ ++ A + +K
Sbjct: 129 SYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKK 188
Query: 290 RRMKVAVVGVPKTIDNDI--LLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLM 347
+ V+GVPKTID D+ ++ +FGFD+A + I + +A S VKLM
Sbjct: 189 NGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVKLM 248
Query: 348 GRSSGYIAMHASLASGQID------------------------------------ICLIP 371
GRS+ ++A+ +L + + ++P
Sbjct: 249 GRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVP 308
Query: 372 ESPFNLHGPNGVLR-------------------------HLKYLIETKGSAVVCVAEGAG 406
E L + L + + +
Sbjct: 309 EGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQ 368
Query: 407 QSLIKKTNATDASGNIVLGDVGV------LIQQETKKYFKEIGVPIDVKYIDP--TYMIR 458
LIK D GN + V +IQ K +D Y R
Sbjct: 369 FELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKGSFTPVDHFFGYEGR 428
Query: 459 ACRANASDGILCTVLGQNAVHGAFAGFSGITVGLCNTHYAYF 500
+ + D C LG NAV G +G + N +
Sbjct: 429 SAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPT 470
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase
{Escherichia coli [TaxId: 562]}
Length = 320
Score = 198 bits (504), Expect = 9e-60
Identities = 89/352 (25%), Positives = 153/352 (43%), Gaps = 45/352 (12%)
Query: 176 KAAIVTCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQN 235
K ++T GG PG+N IR +V + G++ ++GI GY G + + + L R V +
Sbjct: 4 KIGVLTSGGDAPGMNAAIRGVVRSALTEGLE-VMGIYDGYLGLYEDRM--VQLDRYSVSD 60
Query: 236 IHLSGGSLLGVSRGAPTVSE-----IVDSMEERGINMLFVLGGNGTHAGANAIHNECRKR 290
+ GG+ LG +R E ++++++RGI+ L V+GG+G++ GA R
Sbjct: 61 MINRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAM------RLT 114
Query: 291 RMKVAVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGIVKLMGRS 350
M +G+P TIDNDI D T GF TA+ AI+ + S++ I +V++MGR
Sbjct: 115 EMGFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLR-DTSSSHQRISVVEVMGRY 173
Query: 351 SGYIAMHASLASGQIDICLIPESPFNLHGPNGVLRHLKYLIETKGSAVVCVAEGAGQSLI 410
G + + A++A G + ++PE F+ V + + K A+V + E
Sbjct: 174 CGDLTLAAAIAGGC-EFVVVPEVEFSREDL--VNEIKAGIAKGKKHAIVAITEHMCD--- 227
Query: 411 KKTNATDASGNIVLGDVGVLIQQETKKYFKEIGVPIDVKYIDPTYMIRACRANASDGILC 470
D + + + G + + ++ R D IL
Sbjct: 228 -----VDELAHFIEKETG-----------------RETRATVLGHIQRGGSPVPYDRILA 265
Query: 471 TVLGQNAVHGAFAGFSGITVGLCNTHYAYFPIPEVISYPRAVDPNSRMWHRC 522
+ +G A+ AG+ G VG+ N + I + I + W C
Sbjct: 266 SRMGAYAIDLLLAGYGGRCVGIQNEQLVHHDIIDAIENMKRPFK--GDWLDC 315
>d1hcfa_ g.17.1.3 (A:) Neurotrophin 4, NT4 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 127
Score = 31.0 bits (70), Expect = 0.13
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 412 KTNATDASGNIV--LGDVGVLIQQETKKYFKEIG-VPIDVKYIDPTYMIRACRA 462
+ A D G V LG+V ++YF E + + P CR
Sbjct: 27 RRTAVDLRGREVEVLGEVPAAGGSPLRQYFFETRCKADNAEEGGPGAGGGGCRG 80
>d2icha1 b.176.1.1 (A:24-351) AttH-related protein NE1406
{Nitrosomonas europaea [TaxId: 915]}
Length = 328
Score = 30.8 bits (69), Expect = 0.34
Identities = 11/61 (18%), Positives = 18/61 (29%)
Query: 323 AQRAINSAYIEAHSAYHGIGIVKLMGRSSGYIAMHASLASGQIDICLIPESPFNLHGPNG 382
A+ + AY + + + + G + L P P L G NG
Sbjct: 89 ARAGFDLAYARTGNTDVKLDDWIFVRETDGRYRTRIEAEDFTLTFILTPSQPLMLQGENG 148
Query: 383 V 383
Sbjct: 149 F 149
>d1h0ha2 c.81.1.1 (A:1-812) Tungsten containing formate
dehydrogenase, large subunit {Desulfovibrio gigas
[TaxId: 879]}
Length = 812
Score = 31.0 bits (69), Expect = 0.41
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVV 297
+ + D M + I F G N +GAN+ ++ V
Sbjct: 496 SWLTLFDDMFQGKIKGFFAWGQNPACSGANSNKTREALTKLDWMVN 541
>d1bnda_ g.17.1.3 (A:) Brain-derived neurotrophic factor, BDNF
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 29.0 bits (65), Expect = 0.44
Identities = 18/69 (26%), Positives = 22/69 (31%), Gaps = 15/69 (21%)
Query: 399 VCVAEGAGQSLIKKTNATDASGNIV--LGDV---GVLIQQETKKYFKEIGVPIDVKYIDP 453
VC + + K A D SG V L V ++Q YF E K
Sbjct: 5 VCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLKQ----YFYET------KCNPM 54
Query: 454 TYMIRACRA 462
Y CR
Sbjct: 55 GYTKEGCRG 63
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 70
Score = 27.4 bits (61), Expect = 1.00
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 9/43 (20%)
Query: 230 RKVVQNIHLSGG-------SLLGVSRGAPTVSEIVDSMEERGI 265
V + I G L ++ ++++IV M E +
Sbjct: 8 GAVYRLIDQLGPVSRIDLSRLAQLAP--ASITKIVHEMLEAHL 48
>d1kqfa2 c.81.1.1 (A:34-850) Formate dehydrogenase N, alpha subunit
{Escherichia coli [TaxId: 562]}
Length = 817
Score = 29.8 bits (66), Expect = 1.1
Identities = 11/58 (18%), Positives = 19/58 (32%)
Query: 240 GGSLLGVSRGAPTVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVV 297
G L V + + M+E + F G N + + ++K VV
Sbjct: 491 GYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDKNKVVSCLSKLKYMVV 548
>d1fpn1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus A
2 (HRV-2) [TaxId: 12130]}
Length = 269
Score = 27.9 bits (62), Expect = 2.7
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 21/70 (30%)
Query: 110 FADGYPSDEKWHGYINNND--RVLLKVINFSSPTSAGAECIDRDCTWVEQWVHRAGPREE 167
F DGY ++ +G N N+ + +++ H+
Sbjct: 180 FYDGYDEQDQNYGTANTNNMGSLCSRIVTEKHI-------------------HKVHIMTR 220
Query: 168 IYFKPEEVKA 177
IY K + VKA
Sbjct: 221 IYHKAKHVKA 230
>d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 26.4 bits (57), Expect = 6.2
Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 12/111 (10%)
Query: 192 VIRHIVITLEIYGVKNIVGIPFGYRGFCDKELTEMPLSRKVVQNIHLSGGSLLGVSRGAP 251
+ +++ L+ V + G+P + + L K+ + + G +
Sbjct: 5 LGKYLFERLKQVNVNTVFGLPGDF---------NLSLLDKIYEVEGM---RWAGNANELN 52
Query: 252 TVSEIVDSMEERGINMLFVLGGNGTHAGANAIHNECRKRRMKVAVVGVPKT 302
+G++ + G G + N I + + VVGVP
Sbjct: 53 AAYAADGYARIKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSI 103
>d1ev7a_ c.52.1.9 (A:) Restriction endonuclease NaeI {Nocardia
aerocolonigenes [TaxId: 68170]}
Length = 302
Score = 26.8 bits (59), Expect = 7.1
Identities = 15/106 (14%), Positives = 34/106 (32%), Gaps = 8/106 (7%)
Query: 21 LRWNWNGFSSVLVQSKKNHPSGICRSAADEISQSARAS-GLDFNDPDWKSKFQSDFEKRF 79
+++ + + +L H + A + Q + GL P + D ++R
Sbjct: 87 CKFSMSQGAWMLPPESIGHICLVI--WASD--QQCAWTAGLVKVIPQFLGTANRDLKRRL 142
Query: 80 S---LPHITDIFRDATPIPSTFCLRMRTPVTEDFADGYPSDEKWHG 122
+ + ++ D + L + V + S HG
Sbjct: 143 TPEGRAQVVKLWPDHGKLQENLLLHIPGDVRDQIFSAKSSRGNQHG 188
>d1d4oa_ c.31.1.4 (A:) Transhydrogenase domain III (dIII) {Cow (Bos
taurus) [TaxId: 9913]}
Length = 177
Score = 25.9 bits (57), Expect = 9.1
Identities = 7/37 (18%), Positives = 19/37 (51%)
Query: 234 QNIHLSGGSLLGVSRGAPTVSEIVDSMEERGINMLFV 270
+I ++ G L ++ ++++V + E+G + F
Sbjct: 19 NSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFG 55
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.424
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,102,985
Number of extensions: 102370
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 17
Length of query: 532
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 442
Effective length of database: 1,171,896
Effective search space: 517978032
Effective search space used: 517978032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)