BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009560
(532 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EQP|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans
Length = 394
Score = 121 bits (304), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 14/227 (6%)
Query: 202 DYQLANGYGHERAKEVLKRHRNTFITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFI 261
+Y G E A +L++H +T+IT +DF + G+N VRIP+G+W AF P++
Sbjct: 45 EYHWTQTLGKEAASRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYW-AFQLLDNDPYV 103
Query: 262 GGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVI 321
G ++ L+ AL WA NI+ IDLH APGSQNG ++S RD + ++ D TL+V+
Sbjct: 104 QGQVQYLEKALGWARKNNIRVWIDLHGAPGSQNGFDNSGLRD-SYNFQNGDNTQVTLNVL 162
Query: 322 DFLASRYAKHP---ALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQR 378
+ + +Y + ++GIELLNEP + +D L ++ GY +R+ VI
Sbjct: 163 NTIFKKYGGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVI---- 218
Query: 379 IGNADPLELYQANI-----GLHNIVVDLHYYNLFDTFFVNMSTVDNI 420
I +A + Y N G N+VVD H+Y +F ++ + D+I
Sbjct: 219 IHDAFQVFGYWNNFLTVAEGQWNVVVDHHHYQVFSGGELSRNINDHI 265
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 13/83 (15%)
Query: 32 NSKVRGVNLGGWLVIEGWIKPSLFDGILNGDMLDGTQVQIKSVTLEKYVCAESGGGTDVS 91
N+ +RGVNLGGW V+E ++ PSLF+ NG+ G V +++Y ++ G +
Sbjct: 6 NNVIRGVNLGGWFVLEPYMTPSLFEPFQNGNDQSG-------VPVDEYHWTQTLGKE--A 56
Query: 92 VTRDVASSWETFTLWRVSESEFQ 114
+R + W T+ ++E +F+
Sbjct: 57 ASRILQKHWSTW----ITEQDFK 75
>pdb|3N9K|A Chain A, F229aE292S DOUBLE MUTANT OF EXO-Beta-1,3-Glucanase From
Candida Albicans In Complex With Laminaritriose At 1.7 A
Length = 399
Score = 121 bits (304), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 14/227 (6%)
Query: 202 DYQLANGYGHERAKEVLKRHRNTFITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFI 261
+Y G E A +L++H +T+IT +DF + G+N VRIP+G+W AF P++
Sbjct: 50 EYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYW-AFQLLDNDPYV 108
Query: 262 GGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVI 321
G ++ L+ AL WA NI+ IDLH APGSQNG ++S RD + ++ D TL+V+
Sbjct: 109 QGQVQYLEKALGWARKNNIRVWIDLHGAPGSQNGFDNSGLRD-SYNFQNGDNTQVTLNVL 167
Query: 322 DFLASRYAKHP---ALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQR 378
+ + +Y + ++GIELLNEP + +D L ++ GY +R+ VI
Sbjct: 168 NTIFKKYGGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVI---- 223
Query: 379 IGNADPLELYQANI-----GLHNIVVDLHYYNLFDTFFVNMSTVDNI 420
I +A + Y N G N+VVD H+Y +F ++ + D+I
Sbjct: 224 IHDAAQVFGYWNNFLTVAEGQWNVVVDHHHYQVFSGGELSRNINDHI 270
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 32 NSKVRGVNLGGWLVIEGWIKPSLFDGILNGDMLDGTQV 69
N+ +RGVNLGGW V+E ++ PSLF+ NG+ G V
Sbjct: 11 NNVIRGVNLGGWFVLEPYMTPSLFEPFQNGNDQSGVPV 48
>pdb|2PC8|A Chain A, E292q Mutant Of Exo-B-(1,3)-Glucanase From Candida
Albicans In Complex With Two Separately Bound
Glucopyranoside Units At 1.8 A
Length = 400
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 14/227 (6%)
Query: 202 DYQLANGYGHERAKEVLKRHRNTFITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFI 261
+Y G E A +L++H +T+IT +DF + G+N VRIP+G+W AF P++
Sbjct: 51 EYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYW-AFQLLDNDPYV 109
Query: 262 GGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVI 321
G ++ L+ AL WA NI+ IDLH APGSQNG ++S RD + ++ D TL+V+
Sbjct: 110 QGQVQYLEKALGWARKNNIRVWIDLHGAPGSQNGFDNSGLRD-SYNFQNGDNTQVTLNVL 168
Query: 322 DFLASRYAKHP---ALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQR 378
+ + +Y + ++GIELLNEP + +D L ++ GY +R+ VI
Sbjct: 169 NTIFKKYGGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVI---- 224
Query: 379 IGNADPLELYQANI-----GLHNIVVDLHYYNLFDTFFVNMSTVDNI 420
I +A + Y N G N+VVD H+Y +F ++ + D+I
Sbjct: 225 IHDAFQVFGYWNNFLTVAEGQWNVVVDHHHYQVFSGGELSRNINDHI 271
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 32 NSKVRGVNLGGWLVIEGWIKPSLFDGILNGDMLDGTQV 69
N+ +RGVNLGGW V+E ++ PSLF+ NG+ G V
Sbjct: 12 NNVIRGVNLGGWFVLEPYMTPSLFEPFQNGNDQSGVPV 49
>pdb|2PBO|A Chain A, E27q Mutant Of Exo-B-(1,3)-Glucanase From Candida Albicans
At 1.85 A
Length = 400
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 14/227 (6%)
Query: 202 DYQLANGYGHERAKEVLKRHRNTFITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFI 261
+Y G E A +L++H +T+IT +DF + G+N VRIP+G+W AF P++
Sbjct: 51 EYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYW-AFQLLDNDPYV 109
Query: 262 GGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVI 321
G ++ L+ AL WA NI+ IDLH APGSQNG ++S RD + ++ D TL+V+
Sbjct: 110 QGQVQYLEKALGWARKNNIRVWIDLHGAPGSQNGFDNSGLRD-SYNFQNGDNTQVTLNVL 168
Query: 322 DFLASRYAKHP---ALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQR 378
+ + +Y + ++GIELLNEP + +D L ++ GY +R+ VI
Sbjct: 169 NTIFKKYGGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVI---- 224
Query: 379 IGNADPLELYQANI-----GLHNIVVDLHYYNLFDTFFVNMSTVDNI 420
I +A + Y N G N+VVD H+Y +F ++ + D+I
Sbjct: 225 IHDAFQVFGYWNNFLTVAEGQWNVVVDHHHYQVFSGGELSRNINDHI 271
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 32 NSKVRGVNLGGWLVIEGWIKPSLFDGILNGDMLDGTQV 69
N+ +RGVNLGGW V++ ++ PSLF+ NG+ G V
Sbjct: 12 NNVIRGVNLGGWFVLQPYMTPSLFEPFQNGNDQSGVPV 49
>pdb|2PB1|A Chain A, Exo-b-(1,3)-glucanase From Candida Albicans In Complex
With Unhydrolysed And Covalently Linked
2,4-dinitrophenyl-2-deoxy-2- Fluoro-b-d-glucopyranoside
At 1.9 A
Length = 400
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 14/227 (6%)
Query: 202 DYQLANGYGHERAKEVLKRHRNTFITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFI 261
+Y G E A +L++H +T+IT +DF + G+N VRIP+G+W AF P++
Sbjct: 51 EYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYW-AFQLLDNDPYV 109
Query: 262 GGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVI 321
G ++ L+ AL WA NI+ IDLH APGSQNG ++S RD + ++ D TL+V+
Sbjct: 110 QGQVQYLEKALGWARKNNIRVWIDLHGAPGSQNGFDNSGLRD-SYNFQNGDNTQVTLNVL 168
Query: 322 DFLASRYAKHP---ALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQR 378
+ + +Y + ++GIELLNEP + +D L ++ GY +R+ VI
Sbjct: 169 NTIFKKYGGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVI---- 224
Query: 379 IGNADPLELYQANI-----GLHNIVVDLHYYNLFDTFFVNMSTVDNI 420
I +A + Y N G N+VVD H+Y +F ++ + D+I
Sbjct: 225 IHDAFQVFGYWNNFLTVAEGQWNVVVDHHHYQVFSGGELSRNINDHI 271
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 32 NSKVRGVNLGGWLVIEGWIKPSLFDGILNGDMLDGTQV 69
N+ +RGVNLGGW V+E ++ PSLF+ NG+ G V
Sbjct: 12 NNVIRGVNLGGWFVLEPYMTPSLFEPFQNGNDQSGVPV 49
>pdb|1CZ1|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans At 1.85 A
Resolution
pdb|1EQC|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans In Complex
With Castanospermine At 1.85 A
Length = 394
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 14/227 (6%)
Query: 202 DYQLANGYGHERAKEVLKRHRNTFITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFI 261
+Y G E A +L++H +T+IT +DF + G+N VRIP+G+W AF P++
Sbjct: 45 EYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYW-AFQLLDNDPYV 103
Query: 262 GGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVI 321
G ++ L+ AL WA NI+ IDLH APGSQNG ++S RD + ++ D TL+V+
Sbjct: 104 QGQVQYLEKALGWARKNNIRVWIDLHGAPGSQNGFDNSGLRD-SYNFQNGDNTQVTLNVL 162
Query: 322 DFLASRYAKHP---ALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQR 378
+ + +Y + ++GIELLNEP + +D L ++ GY +R+ VI
Sbjct: 163 NTIFKKYGGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVI---- 218
Query: 379 IGNADPLELYQANI-----GLHNIVVDLHYYNLFDTFFVNMSTVDNI 420
I +A + Y N G N+VVD H+Y +F ++ + D+I
Sbjct: 219 IHDAFQVFGYWNNFLTVAEGQWNVVVDHHHYQVFSGGELSRNINDHI 265
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 30 HGNSKVRGVNLGGWLVIEGWIKPSLFDGILNGDMLDGTQV 69
+ N+ +RGVNLGGW V+E ++ PSLF+ NG+ G V
Sbjct: 4 YDNNVIRGVNLGGWFVLEPYMTPSLFEPFQNGNDQSGVPV 43
>pdb|3O6A|A Chain A, F144yF258Y DOUBLE MUTANT OF EXO-Beta-1,3-Glucanase From
Candida Albicans At 2 A
Length = 399
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 14/227 (6%)
Query: 202 DYQLANGYGHERAKEVLKRHRNTFITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFI 261
+Y G E A +L++H +T+IT +DF + G+N VRIP+G+W AF P++
Sbjct: 50 EYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYW-AFQLLDNDPYV 108
Query: 262 GGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVI 321
G ++ L+ AL WA NI+ IDLH APGSQNG ++S RD + ++ D TL+V+
Sbjct: 109 QGQVQYLEKALGWARKNNIRVWIDLHGAPGSQNGYDNSGLRD-SYNFQNGDNTQVTLNVL 167
Query: 322 DFLASRYAKHP---ALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQR 378
+ + +Y + ++GIELLNEP + +D L ++ GY +R+ VI
Sbjct: 168 NTIFKKYGGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVI---- 223
Query: 379 IGNADPLELYQANI-----GLHNIVVDLHYYNLFDTFFVNMSTVDNI 420
I +A + Y N G N+VVD H+Y ++ ++ + D+I
Sbjct: 224 IHDAFQVFGYWNNFLTVAEGQWNVVVDHHHYQVYSGGELSRNINDHI 270
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 32 NSKVRGVNLGGWLVIEGWIKPSLFDGILNGDMLDGTQV 69
N+ +RGVNLGGW V+E ++ PSLF+ NG+ G V
Sbjct: 11 NNVIRGVNLGGWFVLEPYMTPSLFEPFQNGNDQSGVPV 48
>pdb|2PF0|A Chain A, F258i Mutant Of Exo-B-(1,3)-Glucanase From Candida
Albicans At 1.9 A
Length = 400
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 122/227 (53%), Gaps = 14/227 (6%)
Query: 202 DYQLANGYGHERAKEVLKRHRNTFITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFI 261
+Y G E A +L++H +T+IT +DF + G+N VRIP+G+W AF P++
Sbjct: 51 EYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYW-AFQLLDNDPYV 109
Query: 262 GGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVI 321
G ++ L+ AL WA NI+ IDLH APGSQNG ++S RD + ++ D TL+V+
Sbjct: 110 QGQVQYLEKALGWARKNNIRVWIDLHGAPGSQNGFDNSGLRD-SYNFQNGDNTQVTLNVL 168
Query: 322 DFLASRYAKHP---ALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQR 378
+ + +Y + ++GIELLNEP + +D L ++ GY +R+ VI
Sbjct: 169 NTIFKKYGGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVI---- 224
Query: 379 IGNADPLELYQANI-----GLHNIVVDLHYYNLFDTFFVNMSTVDNI 420
I +A + Y N G N+VVD H+Y + ++ + D+I
Sbjct: 225 IHDAFQVFGYWNNFLTVAEGQWNVVVDHHHYQVISGGELSRNINDHI 271
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 32 NSKVRGVNLGGWLVIEGWIKPSLFDGILNGDMLDGTQV 69
N+ +RGVNLGGW V+E ++ PSLF+ NG+ G V
Sbjct: 12 NNVIRGVNLGGWFVLEPYMTPSLFEPFQNGNDQSGVPV 49
>pdb|1H4P|A Chain A, Crystal Structure Of Exo-1,3-Beta Glucanse From
Saccharomyces Cerevisiae
pdb|1H4P|B Chain B, Crystal Structure Of Exo-1,3-Beta Glucanse From
Saccharomyces Cerevisiae
Length = 408
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 109/218 (50%), Gaps = 19/218 (8%)
Query: 202 DYQLANGYGHERAKEVLKRHRNTFITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFI 261
+Y G + AK L+ H +TF +DF + G N VRIP+G+W AF P++
Sbjct: 50 EYHFCQYLGKDLAKSRLQSHWSTFYQEQDFANIASQGFNLVRIPIGYW-AFQILDDDPYV 108
Query: 262 GGSLEA-LDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDV 320
G E+ LD A+ WA ++K +DLH A GSQNG ++S RD S+ ++ T++V
Sbjct: 109 SGLQESYLDQAIGWARNNSLKVWVDLHGAAGSQNGFDNSGLRDSYKFLEDSN-LAVTINV 167
Query: 321 IDFLASRYAKHPAL---LGIELLNEPSAATVPLDILV-PYYKQGYQIVRKYSPTAYVIVC 376
++++ +Y+ L +GIEL+NEP + +D + Y Y+ +R + VI+
Sbjct: 168 LNYILKKYSAEEYLDIVIGIELINEPLGPVLDMDKMKNDYLAPAYEYLRNNIKSDQVIII 227
Query: 377 QRIGNADPLELYQ-------ANIGLHNIVVDLHYYNLF 407
D + Y N G + +D H+Y +F
Sbjct: 228 H-----DAFQPYNYWDDFMTENDGYWGVTIDHHHYQVF 260
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 35 VRGVNLGGWLVIEGWIKPSLFDGILNGDMLDGTQVQIKSVTLEKYVCAESGGGTDVSVTR 94
+RGVN+GGWL++E +I PSLF+ D D + + +Y+ G D++ +R
Sbjct: 13 IRGVNIGGWLLLEPYITPSLFEAFRTNDDND-EGIPVDEYHFCQYL------GKDLAKSR 65
Query: 95 DVASSWETFTLWRVSESEFQFRTSQG 120
+ S W TF E +F SQG
Sbjct: 66 -LQSHWSTF----YQEQDFANIASQG 86
>pdb|1CEC|A Chain A, A Common Protein Fold And Similar Active Site In Two
Distinct Families Of Beta-Glycanases
Length = 343
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 15/193 (7%)
Query: 219 KRHRNTFITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAY 278
K H +TFIT +D + G + VR+P + I D + L +D L W + Y
Sbjct: 22 KEHFDTFITEKDIETIAEAGFDHVRLPFDYPIIESDDNVGEYKEDGLSYIDRCLEWCKKY 81
Query: 279 NIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIE 338
N+ ++D+H APG + +T + + + +D+ FLA RY + E
Sbjct: 82 NLGLVLDMHHAPGYR-----FQDFKTSTLFEDPNQQKRFVDIWRFLAKRYINEREHIAFE 136
Query: 339 LLN---EPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQRIGNADPLELYQ-ANIGL 394
LLN EP + +L + + +R+ T ++ + N+ P EL A+I
Sbjct: 137 LLNEVVEPDSTRWNKLML-----ECIKAIREIDSTMWLYIGGNNYNS-PDELKNLADIDD 190
Query: 395 HNIVVDLHYYNLF 407
IV + H+YN F
Sbjct: 191 DYIVYNFHFYNPF 203
>pdb|1CEN|A Chain A, Cellulase (Celc) Mutant With Glu 140 Replaced By Gln
Complexed With Cellohexaose
pdb|1CEO|A Chain A, Cellulase (Celc) Mutant With Glu 140 Replaced By Gln
Length = 343
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 15/193 (7%)
Query: 219 KRHRNTFITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAY 278
K H +TFIT +D + G + VR+P + I D + L +D L W + Y
Sbjct: 22 KEHFDTFITEKDIETIAEAGFDHVRLPFDYPIIESDDNVGEYKEDGLSYIDRCLEWCKKY 81
Query: 279 NIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIE 338
N+ ++D+H APG + +T + + + +D+ FLA RY + E
Sbjct: 82 NLGLVLDMHHAPGYR-----FQDFKTSTLFEDPNQQKRFVDIWRFLAKRYINEREHIAFE 136
Query: 339 LLN---EPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQRIGNADPLELYQ-ANIGL 394
LLN EP + +L + + +R+ T ++ + N+ P EL A+I
Sbjct: 137 LLNQVVEPDSTRWNKLML-----ECIKAIREIDSTMWLYIGGNNYNS-PDELKNLADIDD 190
Query: 395 HNIVVDLHYYNLF 407
IV + H+YN F
Sbjct: 191 DYIVYNFHFYNPF 203
>pdb|3MMU|A Chain A, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|B Chain B, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|C Chain C, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|D Chain D, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|E Chain E, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|F Chain F, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|G Chain G, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|H Chain H, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|A Chain A, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|B Chain B, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|C Chain C, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|D Chain D, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3AMC|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And DimerAU
pdb|3AMC|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And DimerAU
pdb|3AMD|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|C Chain C, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|D Chain D, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
Length = 317
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 70/184 (38%), Gaps = 16/184 (8%)
Query: 226 ITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIID 285
I E F+ + G + VRIP+ W PP + + +D ++ A + +I+
Sbjct: 34 IKDEFFDIIKEAGFSHVRIPIRWSTHAYAFPPYKIMDRFFKRVDEVINGALKRGLAVVIN 93
Query: 286 LHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSA 345
+H N E R L + +A RY +P L E+LNEP
Sbjct: 94 IHHYEELMNDPEEHKER--------------FLALWKQIADRYKDYPETLFFEILNEPHG 139
Query: 346 ATVPLDILVPYYKQGYQIVRKYSPTAYVIV-CQRIGNADPLELYQANIGLHNIVVDLHYY 404
P + ++ +++R +I+ G LE N +V +HYY
Sbjct: 140 NLTP-EKWNELLEEALKVIRSIDKKHTIIIGTAEWGGISALEKLSVPKWEKNSIVTIHYY 198
Query: 405 NLFD 408
N F+
Sbjct: 199 NPFE 202
>pdb|3AZR|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellobiose
pdb|3AZR|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellobiose
pdb|3AZS|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Mannotriose
pdb|3AZS|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Mannotriose
pdb|3AZT|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|C Chain C, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|D Chain D, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
Length = 317
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 70/184 (38%), Gaps = 16/184 (8%)
Query: 226 ITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIID 285
I E F+ + G + VRIP+ W PP + + +D ++ A + +I+
Sbjct: 34 IKDEFFDIIKEAGFSHVRIPIRWSTHAYAFPPYKIMDRFFKRVDEVINGALKRGLAVVIN 93
Query: 286 LHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSA 345
+H N E R L + +A RY +P L E+LNEP
Sbjct: 94 IHHYEELMNDPEEHKER--------------FLALWKQIADRYKDYPETLFFEILNEPHG 139
Query: 346 ATVPLDILVPYYKQGYQIVRKYSPTAYVIV-CQRIGNADPLELYQANIGLHNIVVDLHYY 404
P + ++ +++R +I+ G LE N +V +HYY
Sbjct: 140 NLTP-EKWNELLEEALKVIRSIDKKHTIIIGTAEWGGISALEKLSVPKWEKNSIVTIHYY 198
Query: 405 NLFD 408
N F+
Sbjct: 199 NPFE 202
>pdb|3AMG|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Cellobiose Substrate, Mutant Form
pdb|3AMG|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Cellobiose Substrate, Mutant Form
Length = 317
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 69/184 (37%), Gaps = 16/184 (8%)
Query: 226 ITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIID 285
I E F+ + G + VRIP+ W PP + + +D ++ A + +I+
Sbjct: 34 IKDEFFDIIKEAGFSHVRIPIRWSTHAYAFPPYKIMDRFFKRVDEVINGALKRGLAVVIN 93
Query: 286 LHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSA 345
+H N E R L + +A RY +P L E+LN P
Sbjct: 94 IHHYEELMNDPEEHKER--------------FLALWKQIADRYKDYPETLFFEILNAPHG 139
Query: 346 ATVPLDILVPYYKQGYQIVRKYSPTAYVIV-CQRIGNADPLELYQANIGLHNIVVDLHYY 404
P + ++ +++R +I+ G LE N +V +HYY
Sbjct: 140 NLTP-EKWNELLEEALKVIRSIDKKHTIIIGTAEWGGISALEKLSVPKWEKNSIVTIHYY 198
Query: 405 NLFD 408
N F+
Sbjct: 199 NPFE 202
>pdb|3AOF|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Mannotriose Substrate
pdb|3AOF|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Mannotriose Substrate
Length = 317
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 69/184 (37%), Gaps = 16/184 (8%)
Query: 226 ITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIID 285
I E F+ + G + VRIP+ W PP + + +D ++ A + +I+
Sbjct: 34 IKDEFFDIIKEAGFSHVRIPIRWSTHAYAFPPYKIMDRFFKRVDEVINGALKRGLAVVIN 93
Query: 286 LHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSA 345
+H N E R L + +A RY +P L E+LN P
Sbjct: 94 IHHYEELMNDPEEHKER--------------FLALWKQIADRYKDYPETLFFEILNAPHG 139
Query: 346 ATVPLDILVPYYKQGYQIVRKYSPTAYVIV-CQRIGNADPLELYQANIGLHNIVVDLHYY 404
P + ++ +++R +I+ G LE N +V +HYY
Sbjct: 140 NLTP-EKWNELLEEALKVIRSIDKKHTIIIGTAEWGGISALEKLSVPKWEKNSIVTIHYY 198
Query: 405 NLFD 408
N F+
Sbjct: 199 NPFE 202
>pdb|1VJZ|A Chain A, Crystal Structure Of Endoglucanase (Tm1752) From
Thermotoga Maritima At 2.05 A Resolution
Length = 341
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 56/151 (37%), Gaps = 7/151 (4%)
Query: 229 EDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHA 288
EDF + + N VRIP + D P E +D + W E Y I I LH
Sbjct: 40 EDFLWXAQWDFNFVRIPXCHLLWSDRGNPFIIREDFFEKIDRVIFWGEKYGIHICISLHR 99
Query: 289 APGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPAL-LGIELLNEPSAAT 347
APG E + T W + F+A RY + L L+NEP
Sbjct: 100 APGYSVNKE---VEEKTNLWKDETAQEAFIHHWSFIARRYKGISSTHLSFNLINEPPFPD 156
Query: 348 VPLDILVPY---YKQGYQIVRKYSPTAYVIV 375
+ + + K+ +RK P +I+
Sbjct: 157 PQIXSVEDHNSLIKRTITEIRKIDPERLIII 187
>pdb|3RJX|A Chain A, Crystal Structure Of Hyperthermophilic
Endo-Beta-1,4-Glucanase
Length = 320
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 84/234 (35%), Gaps = 23/234 (9%)
Query: 224 TFITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCI 283
+I E F + G ++VRIP+ W P L+ + + + A ++ I
Sbjct: 40 VYIEDEYFKIIKERGFDSVRIPIRWSAHISEKYPYEIDKFFLDRVKHVVDVALKNDLVVI 99
Query: 284 IDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEP 343
I+ H H D Y +++ +A + +P L E+ NEP
Sbjct: 100 INCH----------HFEELYQAPD----KYGPVLVEIWKQVAQAFKDYPDKLFFEIFNEP 145
Query: 344 SAATVPLDILVPYYKQGYQIVRKYSPTAYVIV----CQRIGNADPLELYQANIGLHNIVV 399
+ P Y K +I RK +P+ VI+ L+L + NI+V
Sbjct: 146 AQNLTPTKWNELYPKVLGEI-RKTNPSRIVIIDVPNWSNYSYVRELKL----VDDKNIIV 200
Query: 400 DLHYYNLFDTFFVNMSTVDNILFIYKSREAQLQALNNANGPLVFIGEWVNEWNV 453
HYY F+ V L I E + + ++ EW + NV
Sbjct: 201 SFHYYEPFNFTHQGAEWVSPTLPIGVKWEGKDWEVEQIRNHFKYVSEWAKKNNV 254
>pdb|3NCO|A Chain A, Crystal Structure Of Fncel5a From F. Nodosum Rt17-B1
pdb|3NCO|B Chain B, Crystal Structure Of Fncel5a From F. Nodosum Rt17-B1
Length = 320
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 84/234 (35%), Gaps = 23/234 (9%)
Query: 224 TFITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCI 283
+I E F + G ++VRIP+ W P L+ + + + A ++ I
Sbjct: 40 VYIEDEYFKIIKERGFDSVRIPIRWSAHISEKYPYEIDKFFLDRVKHVVDVALKNDLVVI 99
Query: 284 IDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEP 343
I+ H H D Y +++ +A + +P L E+ NEP
Sbjct: 100 INCH----------HFEELYQAPD----KYGPVLVEIWKQVAQAFKDYPDKLFFEIFNEP 145
Query: 344 SAATVPLDILVPYYKQGYQIVRKYSPTAYVIV----CQRIGNADPLELYQANIGLHNIVV 399
+ P Y K +I RK +P+ VI+ L+L + NI+V
Sbjct: 146 AQNLTPTKWNELYPKVLGEI-RKTNPSRIVIIDVPNWSNYSYVRELKL----VDDKNIIV 200
Query: 400 DLHYYNLFDTFFVNMSTVDNILFIYKSREAQLQALNNANGPLVFIGEWVNEWNV 453
HYY F+ V L I E + + ++ EW + NV
Sbjct: 201 SFHYYEPFNFTHQGAEWVSPTLPIGVKWEGKDWEVEQIRNHFKYVSEWAKKNNV 254
>pdb|1QNO|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNP|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNQ|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNR|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNS|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
Length = 344
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
Query: 265 LEALDNALSWAEAYNIKCIIDL---HAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVI 321
L+ LD + AE +N+K II + G N ++ + TT + + +Q +
Sbjct: 89 LQTLDYVVQSAEQHNLKLIIPFVNNWSDYGGINAYVNAFGGNATTWYTNTAAQTQYRKYV 148
Query: 322 DFLASRYAKHPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRK 366
+ SRYA A+ EL NEP D++V + Q V+
Sbjct: 149 QAVVSRYANSTAIFAWELGNEPRCNGCSTDVIVQWATSVSQYVKS 193
>pdb|3RJY|A Chain A, Crystal Structure Of Hyperthermophilic
Endo-Beta-1,4-Glucanase In Complex With Substrate
Length = 320
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 84/234 (35%), Gaps = 23/234 (9%)
Query: 224 TFITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCI 283
+I E F + G ++VRIP+ W P L+ + + + A ++ I
Sbjct: 40 VYIEDEYFKIIKERGFDSVRIPIRWSAHISEKYPYEIDKFFLDRVKHVVDVALKNDLVVI 99
Query: 284 IDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEP 343
I+ H H D Y +++ +A + +P L E+ NEP
Sbjct: 100 INCH----------HFEELYQAPD----KYGPVLVEIWKQVAQAFKDYPDKLFFEIFNEP 145
Query: 344 SAATVPLDILVPYYKQGYQIVRKYSPTAYVIV----CQRIGNADPLELYQANIGLHNIVV 399
+ P Y K +I RK +P+ VI+ L+L + NI+V
Sbjct: 146 AQNLTPTKWNELYPKVLGEI-RKTNPSRIVIIDVPNWSNYSYVRELKL----VDDKNIIV 200
Query: 400 DLHYYNLFDTFFVNMSTVDNILFIYKSREAQLQALNNANGPLVFIGEWVNEWNV 453
HYY F+ V L I E + + ++ EW + NV
Sbjct: 201 SFHYYEPFNFTHQGAEWVSPTLPIGVKWEGKDWEVEQIRNHFKYVSEWAKKNNV 254
>pdb|3W0K|A Chain A, Crystal Structure Of A Glycoside Hydrolase
pdb|3W0K|B Chain B, Crystal Structure Of A Glycoside Hydrolase
Length = 330
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 54/125 (43%), Gaps = 26/125 (20%)
Query: 231 FNFLYRHGINTVRIPVGW--WIA----FDPDPPAPFIGGSLEALDNALSWAEAYNIKCII 284
+FL G N VRIPV + W F+PD E +D L A NI +
Sbjct: 28 LDFLAETGFNFVRIPVDYRFWTRNFDYFNPDKKV------FEYIDLYLRECSARNIHMCL 81
Query: 285 DLHAAPG---SQNGMEHSASRDGT-TDWPASD-YISQTLDVIDFLASRYAK-HPALLGIE 338
+LH APG ++N +E RD D A D ++ Q + A RY L +
Sbjct: 82 NLHRAPGYCINRNDIE----RDNLWLDKRAQDGFVYQW----ELFAKRYKGVSSKFLSFD 133
Query: 339 LLNEP 343
L+NEP
Sbjct: 134 LVNEP 138
>pdb|1ECE|A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic
Domain In Complex With A Cellotetraose
pdb|1ECE|B Chain B, Acidothermus Cellulolyticus Endocellulase E1 Catalytic
Domain In Complex With A Cellotetraose
Length = 358
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 11/81 (13%)
Query: 264 SLEALDNALSWAEAYNIKCIIDLHAAPGS-QNGMEHSASRDGTTDWPASDYISQTLDVID 322
SL+ +D +++A ++ I+D H S Q+ + +++S T +IS +
Sbjct: 93 SLQVMDKIVAYAGQIGLRIILDRHRPDCSGQSALWYTSSVSEAT------WISD----LQ 142
Query: 323 FLASRYAKHPALLGIELLNEP 343
LA RY +P ++G +L NEP
Sbjct: 143 ALAQRYKGNPTVVGFDLHNEP 163
>pdb|1VRX|A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant
Y245g
pdb|1VRX|B Chain B, Endocellulase E1 From Acidothermus Cellulolyticus Mutant
Y245g
Length = 358
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 11/81 (13%)
Query: 264 SLEALDNALSWAEAYNIKCIIDLHAAPGS-QNGMEHSASRDGTTDWPASDYISQTLDVID 322
SL+ +D +++A ++ I+D H S Q+ + +++S T +IS +
Sbjct: 93 SLQVMDKIVAYAGQIGLRIILDRHRPDCSGQSALWYTSSVSEAT------WISD----LQ 142
Query: 323 FLASRYAKHPALLGIELLNEP 343
LA RY +P ++G +L NEP
Sbjct: 143 ALAQRYKGNPTVVGFDLHNEP 163
>pdb|4HTY|A Chain A, Crystal Structure Of A Metagenome-Derived Cellulase Cel5a
pdb|4HU0|A Chain A, Crystal Structure Of A Metagenome-Derived Cellulase Cel5a
In Complex With Cellotetraose
Length = 359
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 71/194 (36%), Gaps = 24/194 (12%)
Query: 219 KRHRNTFITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPA---PFIGGSLEALDNALSWA 275
K ++ + + F + G N VR+PV P A + G LE LD ++W
Sbjct: 79 KIDKDKRFSKKHFEVIRSWGANVVRVPV--------HPRAWKERGVKGYLELLDQVVAWN 130
Query: 276 EAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALL 335
I I+D H+ ++ + S T +T D ++ RY ++
Sbjct: 131 NELGIYTILDWHSIGNLKSEXFQNNSYHTTK--------GETFDFWRRVSERYNGINSVA 182
Query: 336 GIELLNEPSAATVPLDILV-----PYYKQGYQIVRKYSPTAYVIVCQRIGNADPLELYQA 390
E+ NEP+ L I ++ I++ ++P A +V D E
Sbjct: 183 FYEIFNEPTVFNGRLGIATWAEWKAINEEAITIIQAHNPKAIALVAGFNWAYDLKEAAAN 242
Query: 391 NIGLHNIVVDLHYY 404
I NI H Y
Sbjct: 243 PIDRQNIAYVSHPY 256
>pdb|4B0R|A Chain A, Structure Of The Deamidase-Depupylase Dop Of The
Prokaryotic Ubiquitin-Like Modification Pathway
pdb|4B0S|A Chain A, Structure Of The Deamidase-depupylase Dop Of The
Prokaryotic Ubiquitin-like Modification Pathway In
Complex With Atp
Length = 506
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 60 NGDMLDGTQVQIKSV-TLEKYVCAESGGGTDVS-VTRDVASSWETFTLWRVSESEFQF 115
+G L Q+Q++ + KYV E GTDV +TRDV WET TL R+++ Q
Sbjct: 303 DGRRLTAVQLQMEYLEQARKYV--EDRFGTDVDDMTRDVLDRWET-TLVRLADDPMQL 357
>pdb|3QR3|A Chain A, Crystal Structure Of Cel5a (Eg2) From Hypocrea Jecorina
(Trichoderma Reesei)
pdb|3QR3|B Chain B, Crystal Structure Of Cel5a (Eg2) From Hypocrea Jecorina
(Trichoderma Reesei)
Length = 340
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 11/111 (9%)
Query: 233 FLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGS 292
F+ G+ R+PVGW + + S+ D + + CI+D+H
Sbjct: 51 FVNEDGMTIFRLPVGWQYLVNNNLGGNLDSTSISKYDQLVQGCLSLGAYCIVDIHNYARW 110
Query: 293 QNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEP 343
G+ + G T+ + SQ LAS+YA + ++NEP
Sbjct: 111 NGGI---IGQGGPTNAQFTSLWSQ-------LASKYASQSRVW-FGIMNEP 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,813,028
Number of Sequences: 62578
Number of extensions: 781688
Number of successful extensions: 2179
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2106
Number of HSP's gapped (non-prelim): 47
length of query: 532
length of database: 14,973,337
effective HSP length: 103
effective length of query: 429
effective length of database: 8,527,803
effective search space: 3658427487
effective search space used: 3658427487
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)