Query 009560
Match_columns 532
No_of_seqs 396 out of 1979
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 14:35:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009560.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009560hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00150 Cellulase: Cellulase 100.0 2.4E-34 5.1E-39 289.5 23.6 253 221-487 16-280 (281)
2 COG2730 BglC Endoglucanase [Ca 99.9 1.3E-27 2.8E-32 254.1 16.3 301 198-503 46-382 (407)
3 cd00257 Fascin Fascin-like dom 99.8 6.6E-20 1.4E-24 162.2 15.7 110 67-180 2-111 (119)
4 TIGR03356 BGL beta-galactosida 99.7 1.4E-16 3.1E-21 170.4 21.6 183 170-373 7-212 (427)
5 COG2723 BglB Beta-glucosidase/ 99.7 4.1E-16 8.9E-21 164.1 23.7 187 170-374 10-221 (460)
6 PF07745 Glyco_hydro_53: Glyco 99.7 3.9E-16 8.4E-21 160.3 20.5 259 227-513 26-332 (332)
7 PF06268 Fascin: Fascin domain 99.7 3.5E-16 7.7E-21 136.8 11.8 102 77-181 2-104 (111)
8 COG3867 Arabinogalactan endo-1 99.7 1.3E-14 2.9E-19 142.2 22.9 269 227-517 65-395 (403)
9 PRK09852 cryptic 6-phospho-bet 99.5 5.5E-14 1.2E-18 151.8 10.9 161 170-345 10-183 (474)
10 TIGR01233 lacG 6-phospho-beta- 99.5 1.3E-13 2.8E-18 149.0 13.4 150 170-345 10-162 (467)
11 PRK13511 6-phospho-beta-galact 99.5 1.9E-13 4E-18 148.1 13.5 150 170-345 11-163 (469)
12 PLN02849 beta-glucosidase 99.5 1.4E-13 2.9E-18 149.7 11.1 151 170-345 36-190 (503)
13 PRK15014 6-phospho-beta-glucos 99.5 1.2E-13 2.5E-18 149.6 10.2 160 170-344 12-180 (477)
14 PF02449 Glyco_hydro_42: Beta- 99.5 1.1E-12 2.4E-17 138.5 17.0 272 220-513 5-361 (374)
15 PLN02814 beta-glucosidase 99.5 2E-13 4.4E-18 148.4 10.7 151 170-345 34-188 (504)
16 PLN02998 beta-glucosidase 99.5 3.4E-13 7.5E-18 146.4 12.5 153 170-345 37-193 (497)
17 PRK09589 celA 6-phospho-beta-g 99.5 2.7E-13 5.8E-18 146.8 11.2 161 170-345 10-179 (476)
18 PRK09593 arb 6-phospho-beta-gl 99.4 3.8E-13 8.3E-18 145.7 11.1 161 170-345 12-185 (478)
19 PF00232 Glyco_hydro_1: Glycos 99.4 2E-13 4.4E-18 147.7 5.0 184 171-375 12-219 (455)
20 PRK10150 beta-D-glucuronidase; 99.3 1.6E-10 3.4E-15 129.6 24.6 227 228-486 316-557 (604)
21 COG3934 Endo-beta-mannanase [C 99.3 1.8E-11 3.8E-16 127.3 10.0 276 209-508 10-308 (587)
22 KOG0626 Beta-glucosidase, lact 99.2 2.2E-11 4.8E-16 129.6 9.7 155 172-345 45-204 (524)
23 cd00257 Fascin Fascin-like dom 99.2 1.2E-10 2.7E-15 102.8 9.5 86 53-147 34-119 (119)
24 PF02836 Glyco_hydro_2_C: Glyc 99.2 2.4E-09 5.3E-14 109.6 19.6 121 228-378 39-159 (298)
25 PF06268 Fascin: Fascin domain 99.1 1E-09 2.2E-14 96.0 10.1 87 53-147 25-111 (111)
26 smart00633 Glyco_10 Glycosyl h 99.0 2.8E-08 6E-13 99.6 21.0 206 250-492 4-233 (254)
27 PF06229 FRG1: FRG1-like famil 99.0 4.4E-09 9.5E-14 100.1 11.1 100 71-178 4-105 (191)
28 PF01229 Glyco_hydro_39: Glyco 98.9 5.3E-09 1.2E-13 114.3 11.3 270 199-486 20-324 (486)
29 PF06229 FRG1: FRG1-like famil 98.7 6.2E-08 1.3E-12 92.3 9.4 81 66-151 38-119 (191)
30 PRK10340 ebgA cryptic beta-D-g 98.7 8.1E-07 1.8E-11 104.9 20.7 184 228-487 358-548 (1021)
31 PRK09525 lacZ beta-D-galactosi 98.6 1.6E-06 3.5E-11 102.3 20.5 115 228-377 374-489 (1027)
32 PF01301 Glyco_hydro_35: Glyco 98.5 2.3E-06 5E-11 88.6 14.7 137 228-376 27-179 (319)
33 PF13204 DUF4038: Protein of u 98.5 3.3E-06 7E-11 86.3 15.6 134 228-378 33-187 (289)
34 PF12876 Cellulase-like: Sugar 98.5 2.3E-07 5E-12 77.7 5.6 78 324-404 1-88 (88)
35 PF03198 Glyco_hydro_72: Gluca 98.3 2.5E-05 5.4E-10 79.2 16.1 216 228-488 56-283 (314)
36 PF14488 DUF4434: Domain of un 98.3 3.1E-05 6.7E-10 72.6 15.7 137 228-379 23-163 (166)
37 PF00331 Glyco_hydro_10: Glyco 98.2 3.5E-05 7.6E-10 79.9 15.2 233 230-493 26-293 (320)
38 COG1874 LacA Beta-galactosidas 98.1 2.8E-05 6.2E-10 86.8 12.2 141 222-369 27-191 (673)
39 COG3693 XynA Beta-1,4-xylanase 97.9 0.0012 2.5E-08 67.1 19.6 199 264-487 80-305 (345)
40 PF14587 Glyco_hydr_30_2: O-Gl 97.8 0.0025 5.4E-08 66.8 20.4 210 270-495 108-364 (384)
41 PLN03059 beta-galactosidase; P 97.6 0.0011 2.3E-08 75.7 15.4 143 228-378 62-223 (840)
42 PF04601 DUF569: Protein of un 97.6 0.0017 3.8E-08 58.8 13.0 104 63-170 4-118 (142)
43 COG5309 Exo-beta-1,3-glucanase 97.5 0.011 2.5E-07 58.4 18.3 208 228-485 66-282 (305)
44 PF11790 Glyco_hydro_cc: Glyco 97.4 0.0034 7.4E-08 62.4 14.3 119 337-474 69-200 (239)
45 COG3250 LacZ Beta-galactosidas 97.4 0.0016 3.4E-08 75.0 12.4 110 228-377 324-433 (808)
46 PF02055 Glyco_hydro_30: O-Gly 97.1 0.016 3.4E-07 63.7 16.8 231 235-485 110-380 (496)
47 KOG3962 Predicted actin-bundli 97.1 0.0025 5.4E-08 61.1 9.0 119 35-169 29-150 (246)
48 COG5520 O-Glycosyl hydrolase [ 96.9 0.055 1.2E-06 55.7 16.8 222 236-486 77-311 (433)
49 PF07468 Agglutinin: Agglutini 96.7 0.023 5E-07 51.9 11.5 110 71-180 9-141 (153)
50 PRK12568 glycogen branching en 96.5 1.3 2.7E-05 50.9 26.3 145 228-376 273-461 (730)
51 PF03662 Glyco_hydro_79n: Glyc 96.3 0.01 2.2E-07 61.2 7.1 169 264-453 107-299 (319)
52 TIGR01515 branching_enzym alph 96.3 0.15 3.4E-06 57.6 17.1 148 228-377 160-349 (613)
53 PLN02447 1,4-alpha-glucan-bran 96.2 2.6 5.6E-05 48.6 26.1 147 228-377 254-446 (758)
54 smart00791 Agglutinin Amaranth 96.1 0.086 1.9E-06 47.1 11.0 99 67-168 6-112 (139)
55 TIGR02103 pullul_strch alpha-1 95.8 1.7 3.7E-05 51.1 23.1 104 265-380 403-528 (898)
56 PF14200 RicinB_lectin_2: Rici 95.8 0.13 2.8E-06 44.0 10.8 83 66-148 14-105 (105)
57 PRK14705 glycogen branching en 95.8 5.1 0.00011 48.7 27.4 146 228-376 769-957 (1224)
58 PF00167 FGF: Fibroblast growt 95.8 0.36 7.7E-06 42.7 13.8 101 68-173 2-106 (122)
59 smart00642 Aamy Alpha-amylase 95.7 0.036 7.7E-07 52.0 7.6 60 228-287 22-91 (166)
60 PRK10785 maltodextrin glucosid 95.7 0.31 6.7E-06 55.0 16.3 150 228-379 182-374 (598)
61 PLN00197 beta-amylase; Provisi 95.7 0.09 1.9E-06 57.2 11.1 60 228-291 130-191 (573)
62 PLN02161 beta-amylase 95.6 0.094 2E-06 56.6 11.0 59 228-290 120-180 (531)
63 PF13200 DUF4015: Putative gly 95.6 1 2.2E-05 46.6 18.3 244 228-486 16-314 (316)
64 TIGR02402 trehalose_TreZ malto 95.6 0.39 8.4E-06 53.6 16.3 134 229-370 115-271 (542)
65 PRK05402 glycogen branching en 95.6 0.38 8.2E-06 55.6 16.7 146 228-376 269-457 (726)
66 PLN02801 beta-amylase 95.5 0.12 2.7E-06 55.7 11.6 60 228-291 40-101 (517)
67 PRK12313 glycogen branching en 95.5 0.48 1E-05 53.9 17.1 146 228-376 174-361 (633)
68 PLN02803 beta-amylase 95.4 0.12 2.5E-06 56.2 11.0 60 228-291 110-171 (548)
69 PF04601 DUF569: Protein of un 95.3 0.047 1E-06 49.6 6.6 66 101-170 2-69 (142)
70 PLN02705 beta-amylase 95.3 0.14 3.1E-06 56.2 11.1 60 228-291 271-332 (681)
71 TIGR02104 pulA_typeI pullulana 95.3 6.4 0.00014 44.6 24.9 136 229-376 168-348 (605)
72 KOG2233 Alpha-N-acetylglucosam 95.1 0.27 5.9E-06 52.6 12.3 150 228-377 81-282 (666)
73 PLN02960 alpha-amylase 95.1 0.74 1.6E-05 53.4 16.6 149 228-377 420-611 (897)
74 PLN02905 beta-amylase 95.1 0.16 3.4E-06 56.1 10.7 60 228-291 289-350 (702)
75 KOG2230 Predicted beta-mannosi 95.0 0.17 3.7E-06 55.0 10.5 153 227-410 359-527 (867)
76 KOG0496 Beta-galactosidase [Ca 95.0 0.18 3.9E-06 56.0 11.0 109 228-344 52-176 (649)
77 PF00128 Alpha-amylase: Alpha 94.9 0.057 1.2E-06 54.4 6.6 56 228-286 7-72 (316)
78 PF01373 Glyco_hydro_14: Glyco 94.8 0.041 8.8E-07 58.1 5.4 60 228-291 19-80 (402)
79 PF00167 FGF: Fibroblast growt 94.5 0.26 5.6E-06 43.6 9.1 65 113-178 3-68 (122)
80 TIGR02456 treS_nterm trehalose 94.5 1.5 3.2E-05 49.0 17.1 59 228-286 31-96 (539)
81 PF02638 DUF187: Glycosyl hydr 94.0 1.5 3.3E-05 45.4 14.8 148 228-377 22-229 (311)
82 COG1523 PulA Type II secretory 93.8 0.42 9.1E-06 54.4 11.0 69 223-291 198-293 (697)
83 TIGR02100 glgX_debranch glycog 93.8 1.2 2.7E-05 51.0 14.9 58 229-286 188-265 (688)
84 PF14200 RicinB_lectin_2: Rici 93.8 0.79 1.7E-05 39.1 10.3 69 102-170 4-80 (105)
85 TIGR02102 pullulan_Gpos pullul 93.6 1.9 4.1E-05 51.8 16.4 103 265-379 554-673 (1111)
86 COG3623 SgaU Putative L-xylulo 93.6 5.1 0.00011 39.4 16.3 177 263-470 93-281 (287)
87 smart00791 Agglutinin Amaranth 93.4 0.68 1.5E-05 41.5 9.3 79 112-191 7-89 (139)
88 PF05089 NAGLU: Alpha-N-acetyl 93.3 0.45 9.8E-06 49.3 9.2 170 228-402 22-250 (333)
89 PF14871 GHL6: Hypothetical gl 93.2 1.4 3.1E-05 39.6 11.5 105 228-335 3-129 (132)
90 cd02742 GH20_hexosaminidase Be 92.6 3.6 7.8E-05 42.3 14.9 141 228-376 19-191 (303)
91 PLN02877 alpha-amylase/limit d 92.4 2.6 5.6E-05 49.8 14.9 106 264-380 464-599 (970)
92 COG0296 GlgB 1,4-alpha-glucan 92.3 1.4 3E-05 49.6 12.0 143 227-374 167-354 (628)
93 PRK14510 putative bifunctional 92.2 2.5 5.5E-05 51.6 15.1 137 228-373 190-371 (1221)
94 KOG3962 Predicted actin-bundli 91.7 0.24 5.3E-06 47.8 4.5 71 63-138 91-161 (246)
95 PRK03705 glycogen debranching 91.3 1.7 3.7E-05 49.6 11.7 113 229-343 183-341 (658)
96 PRK14706 glycogen branching en 91.3 7.1 0.00015 44.5 16.5 145 228-376 171-357 (639)
97 cd00058 FGF Acidic and basic f 91.2 7 0.00015 34.7 13.1 92 77-172 8-103 (123)
98 PF07468 Agglutinin: Agglutini 91.1 1.5 3.3E-05 40.2 8.8 66 113-178 8-83 (153)
99 PLN00196 alpha-amylase; Provis 91.0 0.79 1.7E-05 49.6 8.3 59 228-286 47-112 (428)
100 TIGR02403 trehalose_treC alpha 91.0 0.63 1.4E-05 51.9 7.7 59 228-286 30-95 (543)
101 cd06564 GH20_DspB_LnbB-like Gl 90.9 5.4 0.00012 41.5 14.2 144 228-377 20-201 (326)
102 KOG2566 Beta-glucocerebrosidas 90.3 19 0.00041 38.1 16.8 234 236-492 135-415 (518)
103 cd06565 GH20_GcnA-like Glycosy 90.0 7.4 0.00016 40.0 14.1 144 228-377 20-186 (301)
104 PLN02361 alpha-amylase 90.0 0.92 2E-05 48.6 7.6 58 228-286 32-96 (401)
105 PRK10933 trehalose-6-phosphate 89.8 0.92 2E-05 50.7 7.7 60 228-287 36-102 (551)
106 smart00442 FGF Acidic and basi 89.6 15 0.00032 32.8 14.4 101 67-172 3-107 (126)
107 PRK05904 coproporphyrinogen II 89.2 3.4 7.3E-05 43.5 11.0 126 224-374 99-233 (353)
108 PRK09441 cytoplasmic alpha-amy 88.8 1.1 2.3E-05 49.3 7.2 59 228-286 25-101 (479)
109 PF01120 Alpha_L_fucos: Alpha- 88.4 5.8 0.00013 41.6 12.2 132 227-373 93-241 (346)
110 PRK09505 malS alpha-amylase; R 87.8 1.5 3.3E-05 50.1 7.8 59 228-286 233-312 (683)
111 cd06568 GH20_SpHex_like A subg 87.6 21 0.00046 37.2 15.6 136 228-369 21-189 (329)
112 PRK07379 coproporphyrinogen II 87.4 5.3 0.00011 42.8 11.3 123 225-372 112-248 (400)
113 cd06563 GH20_chitobiase-like T 87.0 17 0.00037 38.3 14.7 148 228-377 21-226 (357)
114 cd00058 FGF Acidic and basic f 86.9 3.8 8.2E-05 36.4 8.3 59 118-177 6-65 (123)
115 COG3664 XynB Beta-xylosidase [ 86.7 6.1 0.00013 42.0 10.8 226 235-486 15-256 (428)
116 smart00442 FGF Acidic and basi 86.7 3.8 8.2E-05 36.6 8.2 65 113-178 5-70 (126)
117 TIGR02401 trehalose_TreY malto 86.1 2.9 6.3E-05 48.6 8.9 60 228-287 19-86 (825)
118 PRK05799 coproporphyrinogen II 86.0 7.9 0.00017 40.9 11.7 123 225-372 96-232 (374)
119 PRK05628 coproporphyrinogen II 84.8 11 0.00024 39.8 12.1 123 225-372 105-241 (375)
120 PRK06294 coproporphyrinogen II 84.6 11 0.00024 39.9 12.0 123 225-372 100-236 (370)
121 PRK08208 coproporphyrinogen II 84.3 10 0.00022 41.1 11.7 123 225-372 138-268 (430)
122 cd06562 GH20_HexA_HexB-like Be 83.8 19 0.00042 37.8 13.2 147 228-376 21-209 (348)
123 PRK05660 HemN family oxidoredu 83.8 9.9 0.00022 40.4 11.2 124 224-372 103-236 (378)
124 PRK14511 maltooligosyl trehalo 83.7 4.3 9.3E-05 47.5 8.8 60 228-287 23-90 (879)
125 PLN02784 alpha-amylase 83.7 3.2 7E-05 48.2 7.7 58 228-286 524-588 (894)
126 TIGR00539 hemN_rel putative ox 83.3 14 0.00031 38.8 12.1 123 225-372 97-229 (360)
127 KOG0470 1,4-alpha-glucan branc 81.7 2.3 5E-05 48.1 5.4 59 226-286 256-331 (757)
128 PRK08599 coproporphyrinogen II 81.4 17 0.00038 38.4 11.9 123 225-372 97-233 (377)
129 PRK08446 coproporphyrinogen II 81.1 17 0.00036 38.2 11.5 123 225-372 95-224 (350)
130 PRK13347 coproporphyrinogen II 81.0 11 0.00023 41.2 10.3 122 225-371 149-283 (453)
131 COG3589 Uncharacterized conser 80.9 2.8 6E-05 43.3 5.3 136 228-377 19-179 (360)
132 PRK09249 coproporphyrinogen II 80.4 13 0.00029 40.4 10.8 122 225-371 148-282 (453)
133 COG0366 AmyA Glycosidases [Car 78.5 4.9 0.00011 43.7 6.8 58 229-286 33-97 (505)
134 TIGR01212 radical SAM protein, 78.3 23 0.0005 36.4 11.3 125 225-373 120-257 (302)
135 PRK06582 coproporphyrinogen II 78.0 23 0.00049 37.9 11.5 123 225-372 108-243 (390)
136 PRK09058 coproporphyrinogen II 77.8 22 0.00047 38.8 11.4 123 225-372 160-297 (449)
137 COG0635 HemN Coproporphyrinoge 77.8 27 0.00059 37.7 12.1 122 225-371 134-268 (416)
138 smart00812 Alpha_L_fucos Alpha 77.5 84 0.0018 33.6 15.5 139 227-380 83-236 (384)
139 COG3534 AbfA Alpha-L-arabinofu 76.3 64 0.0014 35.0 13.8 159 228-405 52-245 (501)
140 cd06570 GH20_chitobiase-like_1 76.2 36 0.00078 35.2 12.0 60 228-291 21-92 (311)
141 PRK09057 coproporphyrinogen II 76.2 24 0.00052 37.5 11.1 123 225-372 101-236 (380)
142 cd06593 GH31_xylosidase_YicI Y 75.8 60 0.0013 33.2 13.6 144 228-376 27-205 (308)
143 PF04055 Radical_SAM: Radical 75.1 4.9 0.00011 35.8 4.8 62 227-291 89-153 (166)
144 PRK14507 putative bifunctional 74.1 8.5 0.00018 48.2 7.7 60 228-287 761-828 (1693)
145 PF01261 AP_endonuc_2: Xylose 73.3 32 0.00069 32.1 10.2 130 228-376 30-164 (213)
146 PRK09856 fructoselysine 3-epim 73.1 76 0.0017 31.5 13.3 121 263-406 87-211 (275)
147 PF01261 AP_endonuc_2: Xylose 72.0 5.2 0.00011 37.6 4.3 62 228-289 74-135 (213)
148 PRK08207 coproporphyrinogen II 71.8 21 0.00047 39.3 9.6 123 225-372 266-400 (488)
149 cd07938 DRE_TIM_HMGL 3-hydroxy 71.5 28 0.0006 35.3 9.7 63 227-289 75-137 (274)
150 PF12891 Glyco_hydro_44: Glyco 71.5 8.5 0.00018 38.2 5.7 59 313-374 105-176 (239)
151 TIGR01210 conserved hypothetic 71.4 15 0.00032 38.0 7.8 63 224-287 113-176 (313)
152 TIGR00433 bioB biotin syntheta 71.1 59 0.0013 32.9 12.1 126 225-378 120-249 (296)
153 PF14701 hDGE_amylase: glucano 70.1 24 0.00053 38.0 9.1 59 228-287 25-98 (423)
154 TIGR02455 TreS_stutzeri trehal 69.8 14 0.0003 41.8 7.5 60 228-287 77-151 (688)
155 cd06569 GH20_Sm-chitobiase-lik 69.3 55 0.0012 35.7 11.9 27 264-291 95-121 (445)
156 PLN03244 alpha-amylase; Provis 69.0 71 0.0015 37.3 12.9 111 264-376 439-585 (872)
157 COG0276 HemH Protoheme ferro-l 68.9 73 0.0016 33.2 12.0 141 220-380 98-268 (320)
158 PRK14565 triosephosphate isome 68.6 92 0.002 31.0 12.3 132 228-390 75-209 (237)
159 PRK09936 hypothetical protein; 67.9 64 0.0014 33.0 11.1 138 228-379 41-182 (296)
160 TIGR00538 hemN oxygen-independ 67.6 27 0.00058 38.0 9.2 121 225-370 148-281 (455)
161 PF05913 DUF871: Bacterial pro 67.4 8.7 0.00019 40.5 5.2 53 228-288 17-69 (357)
162 PRK09997 hydroxypyruvate isome 67.3 1.3E+02 0.0029 29.6 14.3 121 264-405 83-207 (258)
163 COG1649 Uncharacterized protei 67.2 31 0.00068 37.1 9.2 149 228-377 67-272 (418)
164 TIGR01370 cysRS possible cyste 65.9 1.7E+02 0.0036 30.5 14.0 69 311-379 143-215 (315)
165 cd07948 DRE_TIM_HCS Saccharomy 65.3 8 0.00017 39.0 4.2 62 226-288 72-134 (262)
166 cd02871 GH18_chitinase_D-like 65.1 78 0.0017 32.6 11.7 91 265-372 59-149 (312)
167 cd07937 DRE_TIM_PC_TC_5S Pyruv 64.2 29 0.00063 35.1 8.1 49 226-288 92-140 (275)
168 TIGR00542 hxl6Piso_put hexulos 64.1 1.6E+02 0.0035 29.4 16.9 118 263-406 91-212 (279)
169 KOG4518 Hydroxypyruvate isomer 63.5 98 0.0021 30.0 10.7 128 229-375 20-177 (264)
170 TIGR00542 hxl6Piso_put hexulos 62.7 25 0.00053 35.3 7.3 59 228-288 97-155 (279)
171 PF07555 NAGidase: beta-N-acet 62.5 19 0.0004 37.3 6.4 57 228-288 18-78 (306)
172 PRK09240 thiH thiamine biosynt 62.2 98 0.0021 32.8 12.0 134 225-379 160-300 (371)
173 cd02875 GH18_chitobiase Chitob 61.2 66 0.0014 33.9 10.4 90 270-376 68-157 (358)
174 PRK13210 putative L-xylulose 5 61.2 24 0.00052 35.3 6.9 59 228-288 97-155 (284)
175 PRK04161 tagatose 1,6-diphosph 61.0 14 0.0003 38.3 5.0 60 227-290 109-168 (329)
176 KOG1643 Triosephosphate isomer 60.7 1.5E+02 0.0034 28.8 11.5 146 228-399 76-231 (247)
177 KOG3885 Fibroblast growth fact 60.3 33 0.00072 31.8 6.9 62 114-176 29-92 (155)
178 PLN02746 hydroxymethylglutaryl 60.2 20 0.00044 37.7 6.3 62 227-288 123-184 (347)
179 PF10566 Glyco_hydro_97: Glyco 60.2 17 0.00037 36.9 5.5 50 228-289 109-158 (273)
180 PF10566 Glyco_hydro_97: Glyco 60.0 25 0.00055 35.7 6.7 62 228-289 35-96 (273)
181 COG3280 TreY Maltooligosyl tre 59.9 23 0.0005 40.5 6.8 70 204-287 11-89 (889)
182 TIGR03234 OH-pyruv-isom hydrox 59.6 20 0.00042 35.4 5.9 59 228-288 87-145 (254)
183 cd00842 MPP_ASMase acid sphing 59.3 59 0.0013 32.9 9.4 80 213-292 135-226 (296)
184 COG1137 YhbG ABC-type (unclass 59.2 96 0.0021 30.4 10.0 148 112-289 22-199 (243)
185 PRK06256 biotin synthase; Vali 59.1 66 0.0014 33.3 9.9 126 226-379 150-279 (336)
186 cd00019 AP2Ec AP endonuclease 59.0 18 0.00038 36.4 5.5 59 228-289 88-146 (279)
187 PRK12399 tagatose 1,6-diphosph 58.3 16 0.00035 37.8 4.9 59 228-290 108-166 (324)
188 TIGR01211 ELP3 histone acetylt 58.1 13 0.00029 41.3 4.7 66 223-291 201-268 (522)
189 cd06603 GH31_GANC_GANAB_alpha 57.8 1.9E+02 0.0042 30.0 13.2 59 228-289 27-87 (339)
190 cd07939 DRE_TIM_NifV Streptomy 57.6 11 0.00025 37.6 3.8 60 227-286 71-130 (259)
191 PRK05692 hydroxymethylglutaryl 57.5 13 0.00029 37.9 4.3 62 227-288 81-142 (287)
192 cd06602 GH31_MGAM_SI_GAA This 57.4 1.7E+02 0.0037 30.6 12.6 143 228-376 27-200 (339)
193 PRK04302 triosephosphate isome 56.5 2E+02 0.0043 28.0 14.2 108 228-380 75-183 (223)
194 cd03174 DRE_TIM_metallolyase D 55.2 14 0.0003 36.6 4.0 61 228-288 77-137 (265)
195 TIGR01232 lacD tagatose 1,6-di 55.2 17 0.00038 37.6 4.6 59 228-290 109-167 (325)
196 PTZ00333 triosephosphate isome 55.2 2E+02 0.0044 28.8 12.2 53 228-288 79-131 (255)
197 KOG1066 Glucosidase II catalyt 55.2 34 0.00073 39.0 7.0 117 224-345 367-513 (915)
198 cd06591 GH31_xylosidase_XylS X 54.9 1.1E+02 0.0023 31.7 10.6 58 228-288 27-88 (319)
199 PRK09997 hydroxypyruvate isome 54.5 22 0.00047 35.3 5.2 59 228-288 88-146 (258)
200 TIGR02351 thiH thiazole biosyn 54.2 1.2E+02 0.0025 32.2 10.9 133 225-379 159-299 (366)
201 PRK07094 biotin synthase; Prov 53.9 92 0.002 32.0 9.9 128 226-379 127-258 (323)
202 PRK08898 coproporphyrinogen II 52.9 1.7E+02 0.0036 31.2 12.0 123 225-372 119-250 (394)
203 cd06589 GH31 The enzymes of gl 52.8 1.6E+02 0.0036 29.4 11.3 57 229-288 28-88 (265)
204 cd06542 GH18_EndoS-like Endo-b 52.1 2.4E+02 0.0053 27.7 12.9 99 264-376 49-151 (255)
205 COG0641 AslB Arylsulfatase reg 51.7 3.1E+02 0.0068 29.2 13.6 121 226-370 102-229 (378)
206 KOG0471 Alpha-amylase [Carbohy 51.4 26 0.00056 39.3 5.6 60 228-287 43-109 (545)
207 cd07944 DRE_TIM_HOA_like 4-hyd 51.4 36 0.00079 34.3 6.2 50 226-289 83-132 (266)
208 TIGR01531 glyc_debranch glycog 51.2 42 0.0009 41.5 7.5 55 228-286 135-205 (1464)
209 PF04273 DUF442: Putative phos 51.0 26 0.00056 30.5 4.4 47 225-282 14-60 (110)
210 cd06522 GH25_AtlA-like AtlA is 50.9 2.2E+02 0.0048 26.9 14.1 122 221-376 8-130 (192)
211 cd06601 GH31_lyase_GLase GLase 50.8 86 0.0019 32.8 9.1 106 229-344 28-135 (332)
212 TIGR02090 LEU1_arch isopropylm 50.3 18 0.00038 38.3 4.0 61 227-287 73-133 (363)
213 PLN02449 ferrochelatase 50.2 2.8E+02 0.006 30.7 13.1 143 220-381 187-364 (485)
214 PRK13209 L-xylulose 5-phosphat 49.7 40 0.00086 33.8 6.3 59 228-288 102-160 (283)
215 PRK14567 triosephosphate isome 49.6 2.9E+02 0.0062 27.8 12.6 52 228-287 75-126 (253)
216 PRK09856 fructoselysine 3-epim 49.2 43 0.00092 33.4 6.4 59 228-288 93-151 (275)
217 PF00682 HMGL-like: HMGL-like 48.8 1E+02 0.0023 30.0 9.0 60 227-286 65-128 (237)
218 TIGR03471 HpnJ hopanoid biosyn 48.7 24 0.00052 38.5 4.8 59 226-287 285-344 (472)
219 cd07945 DRE_TIM_CMS Leptospira 48.5 19 0.00042 36.6 3.8 62 227-288 76-137 (280)
220 COG2108 Uncharacterized conser 48.1 36 0.00077 35.3 5.5 63 218-291 111-176 (353)
221 cd00311 TIM Triosephosphate is 47.7 2.5E+02 0.0055 27.9 11.5 52 228-287 74-125 (242)
222 KOG0564 5,10-methylenetetrahyd 47.7 90 0.002 34.2 8.6 99 264-376 90-215 (590)
223 cd06598 GH31_transferase_CtsZ 47.6 2.6E+02 0.0055 28.9 12.0 145 228-376 27-211 (317)
224 PF03659 Glyco_hydro_71: Glyco 47.4 1.1E+02 0.0025 32.6 9.5 50 228-288 20-69 (386)
225 KOG3885 Fibroblast growth fact 47.2 1.7E+02 0.0036 27.2 9.3 78 65-146 24-102 (155)
226 PRK13210 putative L-xylulose 5 47.2 1.8E+02 0.0039 28.9 10.6 118 263-406 91-212 (284)
227 PLN02429 triosephosphate isome 47.1 2.4E+02 0.0052 29.3 11.4 53 228-288 137-189 (315)
228 PRK12858 tagatose 1,6-diphosph 46.5 31 0.00068 36.2 5.0 58 229-290 110-167 (340)
229 TIGR02109 PQQ_syn_pqqE coenzym 45.2 30 0.00064 36.2 4.7 60 225-287 92-153 (358)
230 TIGR02666 moaA molybdenum cofa 45.2 66 0.0014 33.3 7.3 60 228-290 102-164 (334)
231 cd02874 GH18_CFLE_spore_hydrol 44.8 73 0.0016 32.6 7.5 90 269-368 48-137 (313)
232 PF00728 Glyco_hydro_20: Glyco 44.5 34 0.00074 35.5 5.0 146 228-378 21-218 (351)
233 PF02310 B12-binding: B12 bind 43.9 2E+02 0.0044 24.4 9.6 49 331-388 51-99 (121)
234 smart00729 Elp3 Elongator prot 43.9 35 0.00077 31.6 4.6 59 225-286 97-157 (216)
235 PRK11858 aksA trans-homoaconit 43.7 27 0.00059 37.1 4.2 60 227-286 77-136 (378)
236 PF02879 PGM_PMM_II: Phosphogl 43.4 78 0.0017 26.6 6.3 83 264-376 3-91 (104)
237 PRK05301 pyrroloquinoline quin 43.1 31 0.00067 36.5 4.5 59 225-286 101-161 (378)
238 PF07488 Glyco_hydro_67M: Glyc 42.9 1.9E+02 0.0041 29.9 9.7 55 228-288 60-114 (328)
239 cd06547 GH85_ENGase Endo-beta- 42.7 84 0.0018 33.0 7.5 96 270-375 50-146 (339)
240 TIGR02660 nifV_homocitr homoci 42.3 25 0.00055 37.2 3.6 60 227-286 74-133 (365)
241 TIGR02026 BchE magnesium-proto 41.8 80 0.0017 34.8 7.6 58 227-287 286-344 (497)
242 KOG2499 Beta-N-acetylhexosamin 41.5 5.3E+02 0.011 28.5 13.8 144 228-379 201-390 (542)
243 smart00518 AP2Ec AP endonuclea 41.4 2.3E+02 0.0051 28.0 10.4 63 262-341 80-142 (273)
244 COG1082 IolE Sugar phosphate i 41.1 2.3E+02 0.005 27.8 10.3 157 228-407 48-208 (274)
245 PF00232 Glyco_hydro_1: Glycos 40.9 17 0.00036 39.7 2.1 74 431-505 346-430 (455)
246 cd07941 DRE_TIM_LeuA3 Desulfob 40.8 34 0.00074 34.6 4.2 58 227-285 80-138 (273)
247 cd07947 DRE_TIM_Re_CS Clostrid 40.7 32 0.00069 35.1 3.9 61 226-286 75-135 (279)
248 cd00161 RICIN Ricin-type beta- 40.7 2.1E+02 0.0045 23.6 9.6 86 76-167 9-99 (124)
249 cd06419 GH25_muramidase_2 Unch 40.7 2.8E+02 0.0061 26.4 10.2 115 228-376 19-134 (190)
250 PF00762 Ferrochelatase: Ferro 40.3 1.6E+02 0.0035 30.4 9.2 141 221-381 97-267 (316)
251 COG1501 Alpha-glucosidases, fa 39.8 4.3E+02 0.0094 31.0 13.3 149 223-376 274-462 (772)
252 TIGR03217 4OH_2_O_val_ald 4-hy 39.7 67 0.0014 33.6 6.2 48 227-288 89-136 (333)
253 COG1535 EntB Isochorismate hyd 39.6 38 0.00083 32.2 3.8 33 260-294 52-84 (218)
254 cd00419 Ferrochelatase_C Ferro 39.1 1.4E+02 0.003 26.8 7.4 84 278-380 17-102 (135)
255 PF02065 Melibiase: Melibiase; 38.8 3.2E+02 0.007 29.3 11.3 146 229-377 62-234 (394)
256 PF03498 CDtoxinA: Cytolethal 38.6 1.2E+02 0.0027 27.9 7.0 65 64-129 49-114 (150)
257 PRK08195 4-hyroxy-2-oxovalerat 38.6 77 0.0017 33.2 6.5 48 227-288 90-137 (337)
258 PRK12435 ferrochelatase; Provi 37.9 4.8E+02 0.01 27.0 12.7 99 263-380 151-258 (311)
259 KOG4175 Tryptophan synthase al 37.3 3.3E+02 0.0072 26.5 9.7 124 228-401 113-236 (268)
260 PRK10425 DNase TatD; Provision 37.0 2.1E+02 0.0045 28.7 9.1 47 440-486 85-131 (258)
261 PRK13361 molybdenum cofactor b 36.7 1E+02 0.0022 31.9 7.1 55 229-286 105-161 (329)
262 TIGR03279 cyano_FeS_chp putati 36.3 2.2E+02 0.0049 30.9 9.6 98 225-345 125-223 (433)
263 TIGR02171 Fb_sc_TIGR02171 Fibr 36.1 1.1E+02 0.0024 36.2 7.6 70 262-345 804-876 (912)
264 PRK13397 3-deoxy-7-phosphohept 36.1 1.1E+02 0.0024 30.7 6.8 56 230-289 34-89 (250)
265 PRK07535 methyltetrahydrofolat 35.8 3.8E+02 0.0083 26.9 10.8 93 228-344 106-201 (261)
266 cd07943 DRE_TIM_HOA 4-hydroxy- 35.7 1E+02 0.0023 30.7 6.7 47 227-287 87-133 (263)
267 TIGR01305 GMP_reduct_1 guanosi 35.3 1.1E+02 0.0025 32.0 6.9 72 214-285 140-218 (343)
268 PRK15108 biotin synthase; Prov 35.1 5.5E+02 0.012 26.9 13.6 130 225-379 133-265 (345)
269 cd06604 GH31_glucosidase_II_Ma 34.9 5.4E+02 0.012 26.7 13.7 58 228-288 27-86 (339)
270 TIGR02631 xylA_Arthro xylose i 33.1 4.2E+02 0.0092 28.2 11.1 99 263-376 112-215 (382)
271 PRK09389 (R)-citramalate synth 32.8 49 0.0011 36.5 4.1 60 228-287 76-135 (488)
272 PRK12331 oxaloacetate decarbox 32.7 87 0.0019 34.2 5.9 48 226-287 97-144 (448)
273 cd06543 GH18_PF-ChiA-like PF-C 32.5 5.6E+02 0.012 26.2 14.3 122 232-376 19-145 (294)
274 cd01335 Radical_SAM Radical SA 32.3 60 0.0013 29.5 4.1 59 227-288 87-147 (204)
275 COG3684 LacD Tagatose-1,6-bisp 32.1 59 0.0013 32.7 4.0 56 230-290 116-171 (306)
276 PF05270 AbfB: Alpha-L-arabino 31.7 4E+02 0.0087 24.3 12.5 107 69-177 3-124 (142)
277 COG0535 Predicted Fe-S oxidore 31.4 1.3E+02 0.0028 30.7 6.8 60 225-287 105-166 (347)
278 COG5341 Uncharacterized protei 31.4 1.7E+02 0.0036 26.1 6.2 34 44-89 39-72 (132)
279 cd00019 AP2Ec AP endonuclease 31.2 5.3E+02 0.012 25.5 13.8 94 263-377 82-177 (279)
280 PF04343 DUF488: Protein of un 30.8 74 0.0016 27.8 4.2 27 268-294 2-28 (122)
281 cd06595 GH31_xylosidase_XylS-l 30.6 3.6E+02 0.0078 27.4 9.8 62 228-289 28-97 (292)
282 PF11871 DUF3391: Domain of un 30.5 98 0.0021 26.9 5.0 20 227-246 37-56 (128)
283 PRK00164 moaA molybdenum cofac 30.3 1.5E+02 0.0033 30.5 7.1 60 228-290 108-169 (331)
284 COG1099 Predicted metal-depend 30.3 1.4E+02 0.0031 29.5 6.2 120 227-379 13-136 (254)
285 COG5016 Pyruvate/oxaloacetate 30.2 70 0.0015 34.3 4.4 54 220-287 93-146 (472)
286 PRK13745 anaerobic sulfatase-m 30.2 6.7E+02 0.014 26.8 12.2 58 225-284 112-171 (412)
287 cd07940 DRE_TIM_IPMS 2-isoprop 30.0 55 0.0012 32.9 3.6 58 227-285 71-133 (268)
288 PF13199 Glyco_hydro_66: Glyco 29.9 3.8E+02 0.0083 30.2 10.4 145 228-377 121-308 (559)
289 PRK00979 tetrahydromethanopter 29.8 4.1E+02 0.0089 27.5 9.8 87 227-344 135-231 (308)
290 PRK13511 6-phospho-beta-galact 29.5 91 0.002 34.2 5.5 72 431-503 358-442 (469)
291 COG1306 Uncharacterized conser 29.0 82 0.0018 32.4 4.5 57 228-285 80-143 (400)
292 PF00121 TIM: Triosephosphate 28.9 1.8E+02 0.004 28.9 7.1 134 226-390 72-222 (244)
293 TIGR03551 F420_cofH 7,8-dideme 28.7 4.1E+02 0.0089 27.6 10.1 132 226-379 139-279 (343)
294 PLN02849 beta-glucosidase 28.0 85 0.0018 34.8 4.9 72 431-503 376-457 (503)
295 PRK13398 3-deoxy-7-phosphohept 27.9 2.1E+02 0.0046 28.9 7.4 57 228-289 44-101 (266)
296 COG2876 AroA 3-deoxy-D-arabino 27.6 5.8E+02 0.012 26.0 10.1 57 228-288 62-118 (286)
297 cd06542 GH18_EndoS-like Endo-b 27.2 5.8E+02 0.013 25.0 10.5 96 228-338 54-151 (255)
298 TIGR03849 arch_ComA phosphosul 27.1 1.7E+02 0.0036 29.2 6.3 49 228-288 74-122 (237)
299 KOG4589 Cell division protein 26.9 1.5E+02 0.0032 28.7 5.6 63 281-373 71-137 (232)
300 KOG3770 Acid sphingomyelinase 26.8 4.8E+02 0.01 29.4 10.3 106 216-335 284-404 (577)
301 TIGR00587 nfo apurinic endonuc 26.7 6.5E+02 0.014 25.1 11.0 127 226-377 43-178 (274)
302 PLN02561 triosephosphate isome 26.7 6.6E+02 0.014 25.2 11.9 53 228-288 78-130 (253)
303 PF13785 DUF4178: Domain of un 26.6 3.5E+02 0.0077 23.8 8.0 42 41-85 41-88 (140)
304 cd01299 Met_dep_hydrolase_A Me 26.5 2.2E+02 0.0047 29.1 7.5 56 228-284 123-178 (342)
305 cd02872 GH18_chitolectin_chito 26.4 4.4E+02 0.0095 27.4 9.9 102 266-375 56-158 (362)
306 COG0084 TatD Mg-dependent DNas 26.4 6.7E+02 0.015 25.2 10.8 111 359-485 21-134 (256)
307 COG1441 MenC O-succinylbenzoat 26.1 65 0.0014 31.9 3.1 51 222-285 213-263 (321)
308 COG2100 Predicted Fe-S oxidore 26.0 1.1E+02 0.0025 31.8 5.0 65 224-291 200-267 (414)
309 COG3661 AguA Alpha-glucuronida 25.9 8.3E+02 0.018 26.7 11.3 99 228-340 186-286 (684)
310 cd02068 radical_SAM_B12_BD B12 25.6 3.2E+02 0.007 23.6 7.4 47 330-386 38-84 (127)
311 cd06545 GH18_3CO4_chitinase Th 25.5 6.5E+02 0.014 24.7 19.8 86 266-368 46-132 (253)
312 PF13378 MR_MLE_C: Enolase C-t 25.4 2.3E+02 0.0051 23.8 6.3 47 225-284 4-51 (111)
313 PRK09852 cryptic 6-phospho-bet 25.2 1.2E+02 0.0026 33.4 5.4 74 430-504 356-441 (474)
314 PF02679 ComA: (2R)-phospho-3- 25.1 1.2E+02 0.0026 30.3 5.0 50 227-288 86-135 (244)
315 PRK11449 putative deoxyribonuc 24.8 7E+02 0.015 24.8 11.3 46 441-486 92-137 (258)
316 TIGR01233 lacG 6-phospho-beta- 24.7 1E+02 0.0023 33.8 4.8 72 431-503 357-440 (467)
317 PF01041 DegT_DnrJ_EryC1: DegT 24.6 1.5E+02 0.0032 31.0 5.9 27 267-293 128-154 (363)
318 PF14054 DUF4249: Domain of un 24.4 3.5E+02 0.0076 27.1 8.4 75 42-126 26-117 (298)
319 TIGR03234 OH-pyruv-isom hydrox 24.4 6.6E+02 0.014 24.4 14.4 121 264-405 82-206 (254)
320 TIGR03128 RuMP_HxlA 3-hexulose 24.3 2E+02 0.0044 27.2 6.3 44 230-288 68-111 (206)
321 PRK00278 trpC indole-3-glycero 24.2 2.4E+02 0.0052 28.3 7.0 47 228-288 123-169 (260)
322 COG1243 ELP3 Histone acetyltra 24.2 1.2E+02 0.0025 33.2 4.8 66 222-291 192-257 (515)
323 PRK09593 arb 6-phospho-beta-gl 24.1 1.3E+02 0.0028 33.2 5.4 72 431-503 360-444 (478)
324 PRK09989 hypothetical protein; 23.9 6.9E+02 0.015 24.4 14.8 96 264-377 83-179 (258)
325 PRK09589 celA 6-phospho-beta-g 23.7 1.3E+02 0.0028 33.1 5.4 74 430-504 358-444 (476)
326 PRK15222 putative pilin struct 23.6 5.9E+02 0.013 23.6 8.9 79 75-155 56-137 (156)
327 PF01791 DeoC: DeoC/LacD famil 23.2 64 0.0014 31.7 2.6 53 228-285 79-131 (236)
328 PRK01076 L-rhamnose isomerase; 23.1 9.7E+02 0.021 25.9 12.8 128 229-370 77-219 (419)
329 COG3453 Uncharacterized protei 22.9 2E+02 0.0044 25.6 5.3 45 226-281 16-60 (130)
330 TIGR00109 hemH ferrochelatase. 22.8 5.2E+02 0.011 26.7 9.4 100 262-380 166-271 (322)
331 TIGR02883 spore_cwlD N-acetylm 22.7 6.3E+02 0.014 23.7 9.3 64 225-289 30-93 (189)
332 TIGR03235 DNA_S_dndA cysteine 22.7 1.1E+02 0.0025 31.4 4.6 28 264-291 153-180 (353)
333 cd06413 GH25_muramidase_1 Unch 22.7 6.4E+02 0.014 23.6 10.8 118 228-376 14-131 (191)
334 PLN02814 beta-glucosidase 22.7 1.2E+02 0.0026 33.6 4.9 71 432-503 379-457 (504)
335 PLN02229 alpha-galactosidase 22.6 8E+02 0.017 26.7 10.9 124 234-384 94-222 (427)
336 PRK13125 trpA tryptophan synth 22.6 7.4E+02 0.016 24.3 13.0 127 229-405 92-219 (244)
337 PF01183 Glyco_hydro_25: Glyco 22.5 6.2E+02 0.013 23.4 10.8 119 228-376 9-127 (181)
338 smart00481 POLIIIAc DNA polyme 22.3 2.7E+02 0.0058 21.2 5.5 43 228-285 18-60 (67)
339 cd02877 GH18_hevamine_XipI_cla 22.3 8.3E+02 0.018 24.8 10.9 25 265-289 58-82 (280)
340 PF03498 CDtoxinA: Cytolethal 22.3 6.2E+02 0.013 23.3 10.5 57 110-168 51-111 (150)
341 PRK09613 thiH thiamine biosynt 22.2 8.3E+02 0.018 26.9 11.1 131 226-379 178-319 (469)
342 TIGR01302 IMP_dehydrog inosine 22.1 2.7E+02 0.0059 30.3 7.4 62 224-285 272-333 (450)
343 TIGR02867 spore_II_P stage II 22.1 1.9E+02 0.0041 27.9 5.5 54 228-289 37-92 (196)
344 PF09270 BTD: Beta-trefoil DNA 22.0 3.5E+02 0.0075 25.2 6.9 49 65-116 5-66 (158)
345 PF02156 Glyco_hydro_26: Glyco 22.0 2.4E+02 0.0051 29.3 6.6 25 264-288 132-159 (311)
346 TIGR01108 oadA oxaloacetate de 22.0 1.7E+02 0.0036 33.2 5.9 51 223-287 89-139 (582)
347 PRK13209 L-xylulose 5-phosphat 22.0 7.8E+02 0.017 24.3 19.2 118 263-406 96-217 (283)
348 PRK15014 6-phospho-beta-glucos 21.8 1.6E+02 0.0034 32.5 5.5 73 430-503 359-444 (477)
349 PRK09989 hypothetical protein; 21.8 1.3E+02 0.0028 29.8 4.5 57 228-286 88-144 (258)
350 PF00853 Runt: Runt domain; I 21.6 65 0.0014 28.6 2.0 62 52-124 39-100 (135)
351 PRK12677 xylose isomerase; Pro 21.6 9.5E+02 0.021 25.6 11.3 133 228-375 70-211 (384)
352 cd02932 OYE_YqiM_FMN Old yello 21.3 9.1E+02 0.02 24.9 12.7 34 259-293 70-103 (336)
353 PRK09282 pyruvate carboxylase 21.1 1.8E+02 0.0039 33.0 5.9 52 222-287 93-144 (592)
354 PRK08508 biotin synthase; Prov 21.1 8.5E+02 0.018 24.5 11.5 127 225-378 99-227 (279)
355 PF00932 LTD: Lamin Tail Domai 21.1 2.1E+02 0.0045 24.3 5.2 72 36-124 36-107 (116)
356 PF10035 DUF2179: Uncharacteri 21.0 92 0.002 23.1 2.5 21 357-377 29-49 (55)
357 PRK10673 acyl-CoA esterase; Pr 20.9 3.4E+02 0.0073 25.8 7.3 61 321-381 32-92 (255)
358 PF08915 tRNA-Thr_ED: Archaea- 20.8 1.1E+02 0.0024 27.9 3.3 32 210-250 89-120 (138)
359 KOG2511 Nicotinic acid phospho 20.7 90 0.002 32.6 3.1 48 184-236 28-75 (420)
360 TIGR02668 moaA_archaeal probab 20.6 3E+02 0.0066 27.8 7.1 56 228-286 98-155 (302)
361 PRK14862 rimO ribosomal protei 20.3 8E+02 0.017 26.5 10.6 76 335-410 261-341 (440)
362 TIGR00419 tim triosephosphate 20.3 7.9E+02 0.017 23.8 12.1 47 228-286 71-117 (205)
363 PRK00865 glutamate racemase; P 20.3 3.2E+02 0.007 27.3 7.1 59 318-377 18-76 (261)
364 PLN02623 pyruvate kinase 20.3 95 0.0021 35.0 3.4 56 227-289 124-179 (581)
No 1
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=100.00 E-value=2.4e-34 Score=289.46 Aligned_cols=253 Identities=30% Similarity=0.404 Sum_probs=183.2
Q ss_pred hcccc-CCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCC
Q 009560 221 HRNTF-ITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHS 299 (532)
Q Consensus 221 hw~t~-ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~s 299 (532)
||.+. +++++|+.|+++|+|+|||||.|....++.++..+++..+++||++|++|+++||+||||+|..|+..+..
T Consensus 16 ~w~~~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~w~~~~--- 92 (281)
T PF00150_consen 16 HWYNPSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPGWANGG--- 92 (281)
T ss_dssp TTSGGGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTTCSSST---
T ss_pred ccCCCCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCccccccc---
Confidence 35543 88999999999999999999998666656665567788999999999999999999999999986542211
Q ss_pred CCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCC-------cccHHHHHHHHHHHHHhhCCCcE
Q 009560 300 ASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVP-------LDILVPYYKQGYQIVRKYSPTAY 372 (532)
Q Consensus 300 g~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~-------~~~l~~~~~~~~~aIR~~~~~~~ 372 (532)
......+...+.+.++|+.|++||++++.+++|||+|||...... .+.+.+++++++++||+++|+++
T Consensus 93 -----~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~ 167 (281)
T PF00150_consen 93 -----DGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHL 167 (281)
T ss_dssp -----STTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSE
T ss_pred -----cccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcce
Confidence 111122456777889999999999999999999999999985322 26789999999999999999999
Q ss_pred EEEeCC-CCCCCchh-hhhcc-CCCCcEEEEeeecccCCCccccC-ChhhhHHHHHHHHHHHHHHHHhcCCCcEEEeccC
Q 009560 373 VIVCQR-IGNADPLE-LYQAN-IGLHNIVVDLHYYNLFDTFFVNM-STVDNILFIYKSREAQLQALNNANGPLVFIGEWV 448 (532)
Q Consensus 373 Viv~~~-~~~~~~~~-~~~~~-~~~~nvv~s~H~Y~~f~~~~~~~-~~~~~i~~i~~~~~~~~~~~~~~~g~pv~vGEwG 448 (532)
|++++. |+ .+... ....| ....++++++|+|.++....... ........+...+...... ....+.||+|||||
T Consensus 168 i~~~~~~~~-~~~~~~~~~~P~~~~~~~~~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~pv~~gE~G 245 (281)
T PF00150_consen 168 IIVGGGGWG-ADPDGAAADNPNDADNNDVYSFHFYDPYDFSDQWNPGNWGDASALESSFRAALNW-AKKNGKPVVVGEFG 245 (281)
T ss_dssp EEEEEHHHH-TBHHHHHHHSTTTTTTSEEEEEEEETTTCHHTTTSTCSHHHHHHHHHHHHHHHHH-HHHTTSEEEEEEEE
T ss_pred eecCCCccc-cccchhhhcCcccccCceeEEeeEeCCCCcCCccccccchhhhHHHHHHHHHHHH-HHHcCCeEEEeCcC
Confidence 999863 32 23222 23333 24789999999999865321111 1122223333333333333 34567899999999
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEcccCC
Q 009560 449 NEWNVTSGTQKDYQDFGSAQLEVYNAASFGWAYWTLKND 487 (532)
Q Consensus 449 ~~~~~~~a~~~~~~~~~~~ql~~~~~~~~Gw~yW~~k~e 487 (532)
..... +. ....+..+.++.+++.++||+||+|+.+
T Consensus 246 ~~~~~-~~---~~~~~~~~~~~~~~~~~~g~~~W~~~~~ 280 (281)
T PF00150_consen 246 WSNND-GN---GSTDYADAWLDYLEQNGIGWIYWSWKPN 280 (281)
T ss_dssp SSTTT-SC---HHHHHHHHHHHHHHHTTCEEEECEESSS
T ss_pred CcCCC-CC---cCHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 86321 11 3344555557888889999999999974
No 2
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.3e-27 Score=254.08 Aligned_cols=301 Identities=24% Similarity=0.379 Sum_probs=208.3
Q ss_pred CCCccceeecccChhhHHHHHHhhccccCCHHHHHHHHHcCCCEEEEccccccccCCCC-CCCCC--cChHHHHHHHHHH
Q 009560 198 NLHGDYQLANGYGHERAKEVLKRHRNTFITIEDFNFLYRHGINTVRIPVGWWIAFDPDP-PAPFI--GGSLEALDNALSW 274 (532)
Q Consensus 198 ~~~~e~~l~~~~G~~~a~~~~~~hw~t~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~-~~~~~--~~~l~~Ld~~v~~ 274 (532)
.+.++...+..+|...+....+.||.+++++++|..||++|||+||||++||.+ .+.+ ..|+. ...+.+|+++|++
T Consensus 46 ~~~~~~~~g~~lg~~~~~~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~-~~~~~~~p~~~~~~~~~~ld~~I~~ 124 (407)
T COG2730 46 QLVGVSWFGLNLGNHLAQGLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWAL-QATDGDNPYLIGLTQLKILDEAINW 124 (407)
T ss_pred eeecccccceecCchhhcccchhccchhhhhhHHHHHHHcCCcEEEcccchhhh-hccCCCCCCeecchHHHHHHHHHHH
Confidence 345566677788888899999999999999999999999999999999999986 3322 23443 3567799999999
Q ss_pred HHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCCcccHH
Q 009560 275 AEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVPLDILV 354 (532)
Q Consensus 275 a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~ 354 (532)
|+++||+|+||+|.+||++++.++++....... ..++.+++++.|++++.||++.+.|+++|++|||+. -...+.|.
T Consensus 125 a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~~~--~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~-~~~~~~w~ 201 (407)
T COG2730 125 AKKLGIYVLIDLHGYPGGNNGHEHSGYTSDYKE--ENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG-IVTSETWN 201 (407)
T ss_pred HHhcCeeEEEEecccCCCCCCcCcccccccccc--cchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc-cCCccccc
Confidence 999999999999999999999999986654443 568899999999999999999999999999999996 12234455
Q ss_pred HHHHHHHHHHH-hhCCCc---EEEEeCC-CCC---CCchhhh-----------hccCCCCcEEEEeeecccCCCc-----
Q 009560 355 PYYKQGYQIVR-KYSPTA---YVIVCQR-IGN---ADPLELY-----------QANIGLHNIVVDLHYYNLFDTF----- 410 (532)
Q Consensus 355 ~~~~~~~~aIR-~~~~~~---~Viv~~~-~~~---~~~~~~~-----------~~~~~~~nvv~s~H~Y~~f~~~----- 410 (532)
.....+++.|| +....+ +|.+++. ... .....+. ..+..++++....|.|.++...
T Consensus 202 ~~~~~A~~~v~~~i~~~~~~~~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 281 (407)
T COG2730 202 GGDDEAYDVVRNAILSNAPHWLIRVGGQGLNGWRVIMAHTYGSSDGGNDNGVYIVPVDDPGLTANKHLYAPHVYGDDVLN 281 (407)
T ss_pred cchHHHHHHHHhhhhhcCceEEEEECcccccCCeeeccCCCccccccccCCceeeeccchhhhccceeccceeecchhhc
Confidence 44467777775 444444 3334322 111 0000000 0111122233444444443211
Q ss_pred ---cccCChhhhHHHHHHHHHHHHHHHHhcCCCcEEEeccCcccC-C----CCCCHHHHHHHHHHHHHHHHhCCCcEEEE
Q 009560 411 ---FVNMSTVDNILFIYKSREAQLQALNNANGPLVFIGEWVNEWN-V----TSGTQKDYQDFGSAQLEVYNAASFGWAYW 482 (532)
Q Consensus 411 ---~~~~~~~~~i~~i~~~~~~~~~~~~~~~g~pv~vGEwG~~~~-~----~~a~~~~~~~~~~~ql~~~~~~~~Gw~yW 482 (532)
+............+..+...+....+..+.|+++||||..++ . .....+..+.+.+.+.+++.. ..+|.+|
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ge~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~ 360 (407)
T COG2730 282 GGSWTVGGEFDLAETDCAIWLNYVGHGARKNGYPTVIGEFGGNYNANNPNPQDERKDNVKVYLENQLDVFDT-TTYWINN 360 (407)
T ss_pred CCCCCccCCcccccccceeeecceeecccccceeeeeccccCccccCCCCccchhhHHHHHHhhhhhhhccc-eeEEEee
Confidence 110000111112222222334333446788999999999874 1 134556678899999999997 8999999
Q ss_pred cccCC-CCCCchHhhHhCCccc
Q 009560 483 TLKND-RKHWDFEWNIRNNYLQ 503 (532)
Q Consensus 483 ~~k~e-~~~Ws~~~~~~~g~~~ 503 (532)
+++.+ ...|+.+.....+.++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~ 382 (407)
T COG2730 361 PWSGGNDTGYDIEDDINLGLFP 382 (407)
T ss_pred cccCCCCCccchhhcchhhccc
Confidence 99998 7788888877766665
No 3
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=99.84 E-value=6.6e-20 Score=162.19 Aligned_cols=110 Identities=28% Similarity=0.480 Sum_probs=102.4
Q ss_pred ceEEEEEecCCeEEEEecCCCceeEEcCCCCCCcceEEEEEecCCeEEEEecCCeEEEEeCCCceEEEeecCCCCCceEE
Q 009560 67 TQVQIKSVTLEKYVCAESGGGTDVSVTRDVASSWETFTLWRVSESEFQFRTSQGQFLTCDGEGCVVSATAKSPSTPETFE 146 (532)
Q Consensus 67 ~~v~~~s~~~~~yv~ae~gg~~~l~anr~~~~~wE~f~~~~~~~~~~~lr~~~~~~v~~~~~g~~~~a~~~~~~~~e~F~ 146 (532)
-||+|||. +|||||++++| ..|.|||+++++||+|+|.+.++++++||+.||+||+++..|. +.|+++ ++++|.|+
T Consensus 2 p~v~Lrs~-~gkyl~~~~~g-~~v~a~~~~~~~~e~F~l~~~~~g~v~Lrs~~G~yls~~~~g~-l~~~~~-~~~~e~F~ 77 (119)
T cd00257 2 PQVVLRSV-NGRYLSAEAGG-DKVDANRDSLKGDETFTLEFDNTGKYALRSHDGKYLSADSDGG-VQLEGH-PNADCRFT 77 (119)
T ss_pred cEEEEEEc-CCCEEEEeccC-CEEEEcCccCCCceEEEEEECCCCeEEEEECCCcEEEEECCCC-EEecCC-CCCCcEEE
Confidence 48999998 99999999987 5899999999999999999888999999999999999998885 999999 99999999
Q ss_pred EEEcCCCcEEEEecCCceEEeccCceEEeCCCCC
Q 009560 147 IERNNDSRVHIKLKSGTYLQATLGNQLTSDYPGM 180 (532)
Q Consensus 147 ~v~~~~~~v~i~a~nG~~l~a~~~~~v~ad~~~~ 180 (532)
++.+++++++||+.||+||+++..+.|.++....
T Consensus 78 ~e~~~~g~~al~~~~G~yl~~~~~g~l~~~~~~~ 111 (119)
T cd00257 78 LEFHGDGKWALRAENGRYLGGDGSGTLKASSETV 111 (119)
T ss_pred EEECCCCeEEEEcCCCCEEeecCCCeEEEecCCC
Confidence 9998778999999999999999999999998754
No 4
>TIGR03356 BGL beta-galactosidase.
Probab=99.74 E-value=1.4e-16 Score=170.44 Aligned_cols=183 Identities=18% Similarity=0.190 Sum_probs=132.8
Q ss_pred CceEEeCCCCCCCC--CCC-CcceeeecccCCCCccceeecccChhhHHHHHHhhccccCCHHHHHHHHHcCCCEEEEcc
Q 009560 170 GNQLTSDYPGMPGW--DDN-AATFEMAIVANNLHGDYQLANGYGHERAKEVLKRHRNTFITIEDFNFLYRHGINTVRIPV 246 (532)
Q Consensus 170 ~~~v~ad~~~~~~W--~~~-ps~f~~~~~~~~~~~e~~l~~~~G~~~a~~~~~~hw~t~ite~d~~~la~~G~N~VRIpv 246 (532)
.|.-||.+|.|++| +++ ||+++...... + .+..+...+.|.+.++.+ ++||+.||++|+|++|++|
T Consensus 7 wG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~---~--~~~~~~~~~~a~d~y~~y------~eDi~l~~~~G~~~~R~si 75 (427)
T TIGR03356 7 WGVATASYQIEGAVNEDGRGPSIWDTFSHTP---G--KVKDGDTGDVACDHYHRY------EEDVALMKELGVDAYRFSI 75 (427)
T ss_pred EeeechHHhhCCCcCCCCCccchhheeccCC---C--cccCCCCCCccccHHHhH------HHHHHHHHHcCCCeEEccc
Confidence 34457889999999 444 89999743210 0 111223446688888777 8999999999999999999
Q ss_pred ccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHH
Q 009560 247 GWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLAS 326 (532)
Q Consensus 247 ~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ 326 (532)
.|..+ .|+..+.++++.+++++++|+.|+++||.+||+||+. +.+-.......|.+++..++++++++.+++
T Consensus 76 ~Wsri-~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hf-------d~P~~l~~~gGw~~~~~~~~f~~ya~~~~~ 147 (427)
T TIGR03356 76 AWPRI-FPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHW-------DLPQALEDRGGWLNRDTAEWFAEYAAVVAE 147 (427)
T ss_pred chhhc-ccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccC-------CccHHHHhcCCCCChHHHHHHHHHHHHHHH
Confidence 98654 4543246788899999999999999999999999984 333221122579999999999999999999
Q ss_pred HhCCCCcEEEEEeccCCCCCC-------C-Cc--c----------cHHHHHHHHHHHHHhhCCCcEE
Q 009560 327 RYAKHPALLGIELLNEPSAAT-------V-PL--D----------ILVPYYKQGYQIVRKYSPTAYV 373 (532)
Q Consensus 327 ry~~~p~v~g~EL~NEP~~~~-------~-~~--~----------~l~~~~~~~~~aIR~~~~~~~V 373 (532)
||++.... |+++|||.... . .+ . .+.....++++++|+..|+..|
T Consensus 148 ~~~d~v~~--w~t~NEp~~~~~~~y~~G~~~P~~~~~~~~~~~~hnll~Aha~A~~~~~~~~~~~~I 212 (427)
T TIGR03356 148 RLGDRVKH--WITLNEPWCSAFLGYGLGVHAPGLRDLRAALQAAHHLLLAHGLAVQALRANGPGAQV 212 (427)
T ss_pred HhCCcCCE--EEEecCcceecccchhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Confidence 99996555 58999997421 0 10 1 1223334567778888876444
No 5
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=4.1e-16 Score=164.07 Aligned_cols=187 Identities=16% Similarity=0.218 Sum_probs=143.1
Q ss_pred CceEEeCCCCCCCC--CCC-CcceeeecccCCCCccceeecccChhhHHHHHHhhccccCCHHHHHHHHHcCCCEEEEcc
Q 009560 170 GNQLTSDYPGMPGW--DDN-AATFEMAIVANNLHGDYQLANGYGHERAKEVLKRHRNTFITIEDFNFLYRHGINTVRIPV 246 (532)
Q Consensus 170 ~~~v~ad~~~~~~W--~~~-ps~f~~~~~~~~~~~e~~l~~~~G~~~a~~~~~~hw~t~ite~d~~~la~~G~N~VRIpv 246 (532)
+|.-+|.+|.+++| |++ +|++++..... +.+. +..+++++.|..+++.+ ++|++.+|++|+|+.|++|
T Consensus 10 WG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~-~~~~--~~~~~~~~~a~d~YhrY------keDi~L~~emG~~~~R~SI 80 (460)
T COG2723 10 WGGATAAFQVEGAWNEDGKGPSDWDVWVHDE-IPGR--LVSGDPPEEASDFYHRY------KEDIALAKEMGLNAFRTSI 80 (460)
T ss_pred eecccccccccCCcCCCCCCCeeeeeeeccc-cCCc--ccCCCCCccccchhhhh------HHHHHHHHHcCCCEEEeee
Confidence 45678899999999 555 99999887642 2222 23558889999999998 9999999999999999999
Q ss_pred ccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCC-CCCCChhhHHHHHHHHHHHH
Q 009560 247 GWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGT-TDWPASDYISQTLDVIDFLA 325 (532)
Q Consensus 247 ~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~-~~W~~~~~~~~~~~~w~~la 325 (532)
.|...++...+...++.+++.++++|+.|+++||..+|+|||.. .+-..... .+|.+++.++.++++.+.++
T Consensus 81 ~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd-------~P~~L~~~ygGW~nR~~i~~F~~ya~~vf 153 (460)
T COG2723 81 EWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFD-------LPLWLQKPYGGWENRETVDAFARYAATVF 153 (460)
T ss_pred eEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccC-------CcHHHhhccCCccCHHHHHHHHHHHHHHH
Confidence 99766654444356888999999999999999999999999953 22212222 47999999999999999999
Q ss_pred HHhCCCCcEEEEEeccCCCCCC--------C--CcccHHHHHHH----------HHHHHHhhCCC-cEEE
Q 009560 326 SRYAKHPALLGIELLNEPSAAT--------V--PLDILVPYYKQ----------GYQIVRKYSPT-AYVI 374 (532)
Q Consensus 326 ~ry~~~p~v~g~EL~NEP~~~~--------~--~~~~l~~~~~~----------~~~aIR~~~~~-~~Vi 374 (532)
+||++....+. ++|||.... . +.......+|. +++++|+..|+ .+=+
T Consensus 154 ~~f~dkVk~W~--TFNE~n~~~~~~y~~~~~~p~~~~~~~~~qa~hh~~lA~A~avk~~~~~~~~~kIG~ 221 (460)
T COG2723 154 ERFGDKVKYWF--TFNEPNVVVELGYLYGGHPPGIVDPKAAYQVAHHMLLAHALAVKAIKKINPKGKVGI 221 (460)
T ss_pred HHhcCcceEEE--EecchhhhhcccccccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcCceEE
Confidence 99999776644 999998621 0 11224444443 56678888887 4433
No 6
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.72 E-value=3.9e-16 Score=160.28 Aligned_cols=259 Identities=20% Similarity=0.311 Sum_probs=157.0
Q ss_pred CHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCC
Q 009560 227 TIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTT 306 (532)
Q Consensus 227 te~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~ 306 (532)
.++-|+.||+.|+|+|||.| | .+|..++ -..++...++.+.|+++||+|+||+|-. .-|..+|...-+.
T Consensus 26 ~~d~~~ilk~~G~N~vRlRv--w--v~P~~~g---~~~~~~~~~~akrak~~Gm~vlldfHYS----D~WaDPg~Q~~P~ 94 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRV--W--VNPYDGG---YNDLEDVIALAKRAKAAGMKVLLDFHYS----DFWADPGKQNKPA 94 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-----SS-TTTT---TTSHHHHHHHHHHHHHTT-EEEEEE-SS----SS--BTTB-B--T
T ss_pred CCCHHHHHHhcCCCeEEEEe--c--cCCcccc---cCCHHHHHHHHHHHHHCCCeEEEeeccc----CCCCCCCCCCCCc
Confidence 47899999999999999988 3 3443311 1268888888899999999999999952 1122333333455
Q ss_pred CCCC---hhhHHHHHHHHHHHHHHhCCCCc-EEEEEeccCC-------CCCCCCcccHHHHHHHHHHHHHhhCCCcEEEE
Q 009560 307 DWPA---SDYISQTLDVIDFLASRYAKHPA-LLGIELLNEP-------SAATVPLDILVPYYKQGYQIVRKYSPTAYVIV 375 (532)
Q Consensus 307 ~W~~---~~~~~~~~~~w~~la~ry~~~p~-v~g~EL~NEP-------~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv 375 (532)
.|.+ ++..+...++-+.+.+.+++... .-.+++-||- .+.....+.+.+++++++++||+.+|+..|++
T Consensus 95 aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~l 174 (332)
T PF07745_consen 95 AWANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVML 174 (332)
T ss_dssp TCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEE
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 6875 33444444555555555554321 2237899994 43345677899999999999999999999999
Q ss_pred eCCCCCCCc---hhhhhcc--CCCCcEEEEeeecccCCCccccCChhhhHHHHHHHHHHHHHHHHhcCCCcEEEeccCcc
Q 009560 376 CQRIGNADP---LELYQAN--IGLHNIVVDLHYYNLFDTFFVNMSTVDNILFIYKSREAQLQALNNANGPLVFIGEWVNE 450 (532)
Q Consensus 376 ~~~~~~~~~---~~~~~~~--~~~~nvv~s~H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~g~pv~vGEwG~~ 450 (532)
+-.-+ .+. ..|++.. .+.+..|+.+++|+.|+. .+..+. ..+..++++.++||+|-|.|-.
T Consensus 175 H~~~~-~~~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~---------~l~~l~----~~l~~l~~ry~K~V~V~Et~yp 240 (332)
T PF07745_consen 175 HLANG-GDNDLYRWFFDNLKAAGVDFDVIGLSYYPFWHG---------TLEDLK----NNLNDLASRYGKPVMVVETGYP 240 (332)
T ss_dssp EES-T-TSHHHHHHHHHHHHHTTGG-SEEEEEE-STTST----------HHHHH----HHHHHHHHHHT-EEEEEEE---
T ss_pred EECCC-CchHHHHHHHHHHHhcCCCcceEEEecCCCCcc---------hHHHHH----HHHHHHHHHhCCeeEEEecccc
Confidence 84322 121 2333321 467889999999997653 122222 3344556666889999999976
Q ss_pred cC------------------CCCCCHHHHHHHHHHHHHHHHh----CCCcEEEE--cccC--------CCCCCchHhhHh
Q 009560 451 WN------------------VTSGTQKDYQDFGSAQLEVYNA----ASFGWAYW--TLKN--------DRKHWDFEWNIR 498 (532)
Q Consensus 451 ~~------------------~~~a~~~~~~~~~~~ql~~~~~----~~~Gw~yW--~~k~--------e~~~Ws~~~~~~ 498 (532)
++ ...++.+...+|+++++++..+ .+.|.+|| .|-+ .+..|+-..+.+
T Consensus 241 ~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~~~g~GvfYWeP~w~~~~~~~~~~~g~~w~n~~lFD 320 (332)
T PF07745_consen 241 WTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPNGGGLGVFYWEPAWIPVENGWDWGGGSSWDNQALFD 320 (332)
T ss_dssp SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS--TTEEEEEEE-TT-GGGTTHHHHTTTSSSSBGSSB-
T ss_pred ccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhccCCeEEEEeeccccccCCcccccCCCCCccccccCC
Confidence 65 1124677888999999887765 78999999 3332 256677665555
Q ss_pred CCcccCCCCCCccee
Q 009560 499 NNYLQLGNSPNMQIF 513 (532)
Q Consensus 499 ~g~~~~~~~p~~~~~ 513 (532)
....++|.+++|
T Consensus 321 ---~~g~~l~sl~~f 332 (332)
T PF07745_consen 321 ---FNGNALPSLDVF 332 (332)
T ss_dssp ---TTSBB-GGGGHH
T ss_pred ---CCCCCchHhhcC
Confidence 344666766654
No 7
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=99.68 E-value=3.5e-16 Score=136.85 Aligned_cols=102 Identities=30% Similarity=0.523 Sum_probs=90.7
Q ss_pred CeEEEEecCCCceeEEcCCCCCCcceEEEEEecCC-eEEEEecCCeEEEEeCCCceEEEeecCCCCCceEEEEEcCCCcE
Q 009560 77 EKYVCAESGGGTDVSVTRDVASSWETFTLWRVSES-EFQFRTSQGQFLTCDGEGCVVSATAKSPSTPETFEIERNNDSRV 155 (532)
Q Consensus 77 ~~yv~ae~gg~~~l~anr~~~~~wE~f~~~~~~~~-~~~lr~~~~~~v~~~~~g~~~~a~~~~~~~~e~F~~v~~~~~~v 155 (532)
++|+++|..| ..|.|||.+++.||+|+|...+++ .++||+.+|+||+++..|. |+|++++++++++|+|+.+ ++.+
T Consensus 2 ~~~~~~~k~~-~~l~an~~~~~~~e~f~le~~~~~~~v~lrs~~GkYls~~~~G~-v~~~~~~~~~~~~F~i~~~-~~~~ 78 (111)
T PF06268_consen 2 NGYLVSEKFG-AHLNANRASLSDWETFQLEFDDGSYKVALRSHNGKYLSVDSDGS-VVADSETPGPDEFFEIEWH-GGKV 78 (111)
T ss_dssp TEEEEETTCT-CBEEEEESSSSCGGSEEEEEETTEEEEEEECTTSEEEEEETTSE-EEEEESSSSGGGCBEEEEE-TTEE
T ss_pred CcEEEEEEcC-CEEECChhcCcccEEEEEEEECCCCEEEEEcCCCCEEEEcCCCe-EEecCCCCCCCcEEEEEEC-CCEE
Confidence 5688888875 569999999999999998866553 3789999999999999996 9999999999999999999 8889
Q ss_pred EEEecCCceEEeccCceEEeCCCCCC
Q 009560 156 HIKLKSGTYLQATLGNQLTSDYPGMP 181 (532)
Q Consensus 156 ~i~a~nG~~l~a~~~~~v~ad~~~~~ 181 (532)
.++++||+||++++++.|.|+....+
T Consensus 79 ~~~~~nGkYl~~~~~g~l~a~~~~~~ 104 (111)
T PF06268_consen 79 ALRASNGKYLSAGPNGQLKANATSPG 104 (111)
T ss_dssp EEECTTSCEEEEETTTEEEEEESSSS
T ss_pred EEECCCCCEEeeCCCCeEEEcCCCCC
Confidence 99999999999999999999876544
No 8
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=1.3e-14 Score=142.17 Aligned_cols=269 Identities=17% Similarity=0.244 Sum_probs=169.3
Q ss_pred CHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcC--hHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCC
Q 009560 227 TIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGG--SLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDG 304 (532)
Q Consensus 227 te~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~--~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g 304 (532)
.++-|+.||++|+|.|||.| |..--.+.+.+|-.+ .++..-++-+.|++.||+|++|+|-. .-|..++....
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv--wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYS----DfwaDPakQ~k 138 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV--WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYS----DFWADPAKQKK 138 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE--ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccch----hhccChhhcCC
Confidence 36788999999999999988 432111233344333 45555666788999999999999953 22334444445
Q ss_pred CCCCCCh---hhHHHHHHHHHHHHHHhCCCCcE-EEEEeccCCCC-------CCCCcccHHHHHHHHHHHHHhhCCCcEE
Q 009560 305 TTDWPAS---DYISQTLDVIDFLASRYAKHPAL-LGIELLNEPSA-------ATVPLDILVPYYKQGYQIVRKYSPTAYV 373 (532)
Q Consensus 305 ~~~W~~~---~~~~~~~~~w~~la~ry~~~p~v-~g~EL~NEP~~-------~~~~~~~l~~~~~~~~~aIR~~~~~~~V 373 (532)
+..|.+. ..+....++-+...+.+++.... -..++-||-.. .+...+.+.+++.+++.+||+++|+..|
T Consensus 139 PkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~p~ikv 218 (403)
T COG3867 139 PKAWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSPTIKV 218 (403)
T ss_pred cHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcCCCceE
Confidence 5667643 23334445666666677665322 24789999654 2336788999999999999999999999
Q ss_pred EEeCCCCC--CCchhhhhcc--CCCCcEEEEeeecccCCCccccCChhhhHHHHHHHHHHHHHHHHhcCCCcEEEeccCc
Q 009560 374 IVCQRIGN--ADPLELYQAN--IGLHNIVVDLHYYNLFDTFFVNMSTVDNILFIYKSREAQLQALNNANGPLVFIGEWVN 449 (532)
Q Consensus 374 iv~~~~~~--~~~~~~~~~~--~~~~nvv~s~H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~g~pv~vGEwG~ 449 (532)
+++-.-+. .-...+++-. ..-+..|+...||+.|+.. +..+ ...+.+++++.++.|+|-|-+-
T Consensus 219 ~lHla~g~~n~~y~~~fd~ltk~nvdfDVig~SyYpyWhgt---------l~nL----~~nl~dia~rY~K~VmV~Etay 285 (403)
T COG3867 219 ALHLAEGENNSLYRWIFDELTKRNVDFDVIGSSYYPYWHGT---------LNNL----TTNLNDIASRYHKDVMVVETAY 285 (403)
T ss_pred EEEecCCCCCchhhHHHHHHHHcCCCceEEeeeccccccCc---------HHHH----HhHHHHHHHHhcCeEEEEEecc
Confidence 88743221 1112233221 3567789999999887642 2222 2234456667778899999987
Q ss_pred ccCCCC------------------CCHHHHHHHHHHHHHHH----HhCCCcEEEEc-----------ccC--------C-
Q 009560 450 EWNVTS------------------GTQKDYQDFGSAQLEVY----NAASFGWAYWT-----------LKN--------D- 487 (532)
Q Consensus 450 ~~~~~~------------------a~~~~~~~~~~~ql~~~----~~~~~Gw~yW~-----------~k~--------e- 487 (532)
.|+... .+.+....|+++++++- .+.+.|-|||. |.. |
T Consensus 286 ~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nvp~~~GlGvFYWEp~wipv~~g~gwat~~~~~y~~e~ 365 (403)
T COG3867 286 TYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNVPKSNGLGVFYWEPAWIPVVLGSGWATSYAAKYDPEN 365 (403)
T ss_pred eeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhCCCCCceEEEEecccceeccCCCccccchhhccCccc
Confidence 653110 01122345666555444 34689999993 221 1
Q ss_pred ---CCCCchHhhHhCCcccCCCCCCcceeechh
Q 009560 488 ---RKHWDFEWNIRNNYLQLGNSPNMQIFNSLV 517 (532)
Q Consensus 488 ---~~~Ws~~~~~~~g~~~~~~~p~~~~~~~~~ 517 (532)
+..|+-+.+.+ +...|.|++++||.+.
T Consensus 366 w~~gsavdNqaLfd---f~G~~LPSl~vFn~ve 395 (403)
T COG3867 366 WGEGSAVDNQALFD---FNGHPLPSLNVFNYVE 395 (403)
T ss_pred ccCCCccchhhhhh---ccCCcCcchhhhhhhc
Confidence 23344444444 4678999999999875
No 9
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=99.51 E-value=5.5e-14 Score=151.85 Aligned_cols=161 Identities=12% Similarity=0.127 Sum_probs=120.9
Q ss_pred CceEEeCCCCCCCC--CCC-CcceeeecccC-CCCc------ccee-ecc-cChhhHHHHHHhhccccCCHHHHHHHHHc
Q 009560 170 GNQLTSDYPGMPGW--DDN-AATFEMAIVAN-NLHG------DYQL-ANG-YGHERAKEVLKRHRNTFITIEDFNFLYRH 237 (532)
Q Consensus 170 ~~~v~ad~~~~~~W--~~~-ps~f~~~~~~~-~~~~------e~~l-~~~-~G~~~a~~~~~~hw~t~ite~d~~~la~~ 237 (532)
.|.-||.||.|++| +++ ||+++...... .+.. ...+ ... +..+.|.+.++++ ++|++.|+++
T Consensus 10 wG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry------~eDi~l~~~l 83 (474)
T PRK09852 10 WGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRY------KEDIALMAEM 83 (474)
T ss_pred EeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhh------HHHHHHHHHc
Confidence 34457889999999 555 99999743310 0100 0011 111 2446688888887 9999999999
Q ss_pred CCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCC-CCCCCCChhhHHH
Q 009560 238 GINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRD-GTTDWPASDYISQ 316 (532)
Q Consensus 238 G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~-g~~~W~~~~~~~~ 316 (532)
|+|+.|+++.|..+++...+...++..+++++++|+.|+++||.+||+|||. +.+.... ....|.+++..+.
T Consensus 84 G~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~-------~~P~~l~~~~GGW~~~~~~~~ 156 (474)
T PRK09852 84 GFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHF-------DVPMHLVTEYGSWRNRKMVEF 156 (474)
T ss_pred CCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCC-------CCCHHHHHhcCCCCCHHHHHH
Confidence 9999999999976655432334588899999999999999999999999984 3333221 2357999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeccCCCC
Q 009560 317 TLDVIDFLASRYAKHPALLGIELLNEPSA 345 (532)
Q Consensus 317 ~~~~w~~la~ry~~~p~v~g~EL~NEP~~ 345 (532)
++++++.+++||++....+. .+|||..
T Consensus 157 F~~ya~~~~~~fgd~Vk~Wi--TfNEPn~ 183 (474)
T PRK09852 157 FSRYARTCFEAFDGLVKYWL--TFNEINI 183 (474)
T ss_pred HHHHHHHHHHHhcCcCCeEE--eecchhh
Confidence 99999999999999877754 9999973
No 10
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=99.50 E-value=1.3e-13 Score=149.02 Aligned_cols=150 Identities=15% Similarity=0.231 Sum_probs=118.7
Q ss_pred CceEEeCCCCCCCC--CCC-CcceeeecccCCCCccceeecccChhhHHHHHHhhccccCCHHHHHHHHHcCCCEEEEcc
Q 009560 170 GNQLTSDYPGMPGW--DDN-AATFEMAIVANNLHGDYQLANGYGHERAKEVLKRHRNTFITIEDFNFLYRHGINTVRIPV 246 (532)
Q Consensus 170 ~~~v~ad~~~~~~W--~~~-ps~f~~~~~~~~~~~e~~l~~~~G~~~a~~~~~~hw~t~ite~d~~~la~~G~N~VRIpv 246 (532)
.|.-||.||.++.| +++ ||+++..... . .....+.|.+.++++ ++||+.||++|+|+.|+++
T Consensus 10 wG~AtsA~QvEG~~~~~Gkg~siwD~~~~~---~------~~~~~~~a~d~yhry------~eDi~L~~~lG~~~yRfSI 74 (467)
T TIGR01233 10 FGGATAAYQAEGATHTDGKGPVAWDKYLED---N------YWYTAEPASDFYHKY------PVDLELAEEYGVNGIRISI 74 (467)
T ss_pred EeeechhhhcCCCcCCCCCcCchhhccccC---C------CCCCCCccCchhhhH------HHHHHHHHHcCCCEEEEec
Confidence 45567889999999 555 9999973321 0 112346788888887 9999999999999999999
Q ss_pred ccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHH
Q 009560 247 GWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLAS 326 (532)
Q Consensus 247 ~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ 326 (532)
.|..++ |+..++++++.+++++++|+.|+++||.+||+|||. +.+-.......|.+++..+.|+++.+.+++
T Consensus 75 sWsRI~-P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~-------dlP~~L~~~GGW~n~~~v~~F~~YA~~~f~ 146 (467)
T TIGR01233 75 AWSRIF-PTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHF-------DTPEALHSNGDFLNRENIEHFIDYAAFCFE 146 (467)
T ss_pred chhhcc-CCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCC-------CCcHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 996554 433346788999999999999999999999999994 443322234679999999999999999999
Q ss_pred HhCCCCcEEEEEeccCCCC
Q 009560 327 RYAKHPALLGIELLNEPSA 345 (532)
Q Consensus 327 ry~~~p~v~g~EL~NEP~~ 345 (532)
+|++ ... |=.+|||..
T Consensus 147 ~fgd-Vk~--WiT~NEP~~ 162 (467)
T TIGR01233 147 EFPE-VNY--WTTFNEIGP 162 (467)
T ss_pred HhCC-CCE--EEEecchhh
Confidence 9996 444 569999975
No 11
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=99.49 E-value=1.9e-13 Score=148.09 Aligned_cols=150 Identities=16% Similarity=0.257 Sum_probs=118.8
Q ss_pred CceEEeCCCCCCCC--CCC-CcceeeecccCCCCccceeecccChhhHHHHHHhhccccCCHHHHHHHHHcCCCEEEEcc
Q 009560 170 GNQLTSDYPGMPGW--DDN-AATFEMAIVANNLHGDYQLANGYGHERAKEVLKRHRNTFITIEDFNFLYRHGINTVRIPV 246 (532)
Q Consensus 170 ~~~v~ad~~~~~~W--~~~-ps~f~~~~~~~~~~~e~~l~~~~G~~~a~~~~~~hw~t~ite~d~~~la~~G~N~VRIpv 246 (532)
.|.-||.||.|+.| +++ ||+++..... + .....+.|.+.++++ ++|++.||++|+|+.|+++
T Consensus 11 wG~Atsa~QiEG~~~~~Gkg~siwD~~~~~-~--------~~~~~~~a~d~Y~ry------~eDi~L~~~lG~~~yRfSI 75 (469)
T PRK13511 11 FGGATAAYQAEGATKTDGKGPVAWDKYLEE-N--------YWFTPDPASDFYHRY------PEDLKLAEEFGVNGIRISI 75 (469)
T ss_pred EEeechHhhhcCCcCCCCCccchhhccccc-C--------CCCCCCcccchhhhh------HHHHHHHHHhCCCEEEeec
Confidence 34567889999999 555 9999974321 1 112346688888777 9999999999999999999
Q ss_pred ccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHH
Q 009560 247 GWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLAS 326 (532)
Q Consensus 247 ~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ 326 (532)
.|..+++ +..+..++..+++++++|+.|+++||.++|+|||. +.+-.......|.+++..+.|+++.+.+++
T Consensus 76 sWsRI~P-~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~-------dlP~~L~~~GGW~n~~~v~~F~~YA~~~~~ 147 (469)
T PRK13511 76 AWSRIFP-DGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHF-------DTPEALHSNGDWLNRENIDHFVRYAEFCFE 147 (469)
T ss_pred cHhhcCc-CCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCC-------CCcHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 9965544 33246788999999999999999999999999984 443322234679999999999999999999
Q ss_pred HhCCCCcEEEEEeccCCCC
Q 009560 327 RYAKHPALLGIELLNEPSA 345 (532)
Q Consensus 327 ry~~~p~v~g~EL~NEP~~ 345 (532)
||++ ... |=.+|||..
T Consensus 148 ~fgd-Vk~--W~T~NEP~~ 163 (469)
T PRK13511 148 EFPE-VKY--WTTFNEIGP 163 (469)
T ss_pred HhCC-CCE--EEEccchhh
Confidence 9999 666 449999974
No 12
>PLN02849 beta-glucosidase
Probab=99.48 E-value=1.4e-13 Score=149.70 Aligned_cols=151 Identities=15% Similarity=0.207 Sum_probs=121.7
Q ss_pred CceEEeCCCCCCCC--CCC-CcceeeecccCCCCccceeecccChhhHHHHHHhhccccCCHHHHHHHHHcCCCEEEEcc
Q 009560 170 GNQLTSDYPGMPGW--DDN-AATFEMAIVANNLHGDYQLANGYGHERAKEVLKRHRNTFITIEDFNFLYRHGINTVRIPV 246 (532)
Q Consensus 170 ~~~v~ad~~~~~~W--~~~-ps~f~~~~~~~~~~~e~~l~~~~G~~~a~~~~~~hw~t~ite~d~~~la~~G~N~VRIpv 246 (532)
.|.-||.||.|++| +++ ||++++.... + .....+.|.+.++++ ++|++.||++|+|+.|+++
T Consensus 36 wG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~-~--------~~~~~~~a~D~YhrY------~eDI~Lm~~lG~~aYRfSI 100 (503)
T PLN02849 36 FGAGTSAYQWEGAFDEDGRKPSVWDTFLHS-R--------NMSNGDIACDGYHKY------KEDVKLMVETGLDAFRFSI 100 (503)
T ss_pred EEeechhhhhcCCcCCCCCcCcceeeeecc-C--------CCCCCCccccHHHhH------HHHHHHHHHcCCCeEEEec
Confidence 45567889999999 554 9999984422 1 123446688888888 9999999999999999999
Q ss_pred ccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCC-CCCCCChhhHHHHHHHHHHHH
Q 009560 247 GWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDG-TTDWPASDYISQTLDVIDFLA 325 (532)
Q Consensus 247 ~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g-~~~W~~~~~~~~~~~~w~~la 325 (532)
.|..++ |+..++.+++++++++++|+.+.++||.++|+||| |+.+-.... ...|.+++..+.++++.+.++
T Consensus 101 sWsRI~-P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H-------~dlP~~L~~~yGGW~nr~~v~~F~~YA~~~f 172 (503)
T PLN02849 101 SWSRLI-PNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFH-------YDHPQYLEDDYGGWINRRIIKDFTAYADVCF 172 (503)
T ss_pred cHHhcC-cCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecC-------CCCcHHHHHhcCCcCCchHHHHHHHHHHHHH
Confidence 986554 44334678899999999999999999999999998 444432222 368999999999999999999
Q ss_pred HHhCCCCcEEEEEeccCCCC
Q 009560 326 SRYAKHPALLGIELLNEPSA 345 (532)
Q Consensus 326 ~ry~~~p~v~g~EL~NEP~~ 345 (532)
++|++....+. .+|||..
T Consensus 173 ~~fgDrVk~Wi--T~NEP~~ 190 (503)
T PLN02849 173 REFGNHVKFWT--TINEANI 190 (503)
T ss_pred HHhcCcCCEEE--Eecchhh
Confidence 99999877754 9999984
No 13
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=99.47 E-value=1.2e-13 Score=149.58 Aligned_cols=160 Identities=15% Similarity=0.203 Sum_probs=118.6
Q ss_pred CceEEeCCCCCCCC--CCC-Ccceeeeccc-CCCCccc---eeecc-cChhhHHHHHHhhccccCCHHHHHHHHHcCCCE
Q 009560 170 GNQLTSDYPGMPGW--DDN-AATFEMAIVA-NNLHGDY---QLANG-YGHERAKEVLKRHRNTFITIEDFNFLYRHGINT 241 (532)
Q Consensus 170 ~~~v~ad~~~~~~W--~~~-ps~f~~~~~~-~~~~~e~---~l~~~-~G~~~a~~~~~~hw~t~ite~d~~~la~~G~N~ 241 (532)
.|.-||.||.|++| +++ ||++++.... ....+.. ..... +..+.|.+.++++ ++|++.||++|+|+
T Consensus 12 wG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry------~EDI~Lm~elG~~~ 85 (477)
T PRK15014 12 WGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHY------KEDIKLFAEMGFKC 85 (477)
T ss_pred EeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCccccc------HHHHHHHHHcCCCE
Confidence 44567889999999 555 9999974310 0000000 00111 2345677777776 99999999999999
Q ss_pred EEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCC-CCCCCCChhhHHHHHHH
Q 009560 242 VRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRD-GTTDWPASDYISQTLDV 320 (532)
Q Consensus 242 VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~-g~~~W~~~~~~~~~~~~ 320 (532)
.|+++.|..+++...+...++..+++++++|+.++++||.+||+|||. +.+.... ....|.+++..+.|+++
T Consensus 86 yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~-------dlP~~L~~~yGGW~n~~~~~~F~~Y 158 (477)
T PRK15014 86 FRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHF-------EMPLHLVQQYGSWTNRKVVDFFVRF 158 (477)
T ss_pred EEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCC-------CCCHHHHHhcCCCCChHHHHHHHHH
Confidence 999999976654322334588899999999999999999999999984 3332221 23679999999999999
Q ss_pred HHHHHHHhCCCCcEEEEEeccCCC
Q 009560 321 IDFLASRYAKHPALLGIELLNEPS 344 (532)
Q Consensus 321 w~~la~ry~~~p~v~g~EL~NEP~ 344 (532)
.+.+++||++....+. .+|||.
T Consensus 159 a~~~f~~fgdrVk~Wi--T~NEp~ 180 (477)
T PRK15014 159 AEVVFERYKHKVKYWM--TFNEIN 180 (477)
T ss_pred HHHHHHHhcCcCCEEE--EecCcc
Confidence 9999999999877654 999996
No 14
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.47 E-value=1.1e-12 Score=138.52 Aligned_cols=272 Identities=21% Similarity=0.282 Sum_probs=141.7
Q ss_pred hhccccCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEc--CCCCCC---C-
Q 009560 220 RHRNTFITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDL--HAAPGS---Q- 293 (532)
Q Consensus 220 ~hw~t~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDl--H~~pGs---q- 293 (532)
+||..-.-++|++.|+++|+|+|||....|...+|.++ .| .++.||++|+.|+++||+|||.+ +..|.. .
T Consensus 5 e~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG-~y---dF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~ 80 (374)
T PF02449_consen 5 EQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEG-QY---DFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKY 80 (374)
T ss_dssp GGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTT-B------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCS
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCC-ee---ecHHHHHHHHHHHhccCeEEEEecccccccchhhhc
Confidence 46776667999999999999999996545567788764 55 58889999999999999999976 333421 0
Q ss_pred -C--CCCCCCCCC--C---CCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCC-C-----------------
Q 009560 294 -N--GMEHSASRD--G---TTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAA-T----------------- 347 (532)
Q Consensus 294 -n--~~~~sg~~~--g---~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~-~----------------- 347 (532)
. ..+..|... + .....++..++...++++.|++||+++|+|++|++-|||... .
T Consensus 81 Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~~~~~~~~~~~f~~wLk~kY 160 (374)
T PF02449_consen 81 PEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYHRCYSPACQAAFRQWLKEKY 160 (374)
T ss_dssp GCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCTS--SHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcCcCCChHHHHHHHHHHHHHh
Confidence 0 001111110 1 111225678999999999999999999999999999998651 0
Q ss_pred ------------------------C---------------------CcccHHHHHHHHHHHHHhhCCCcEEEEe--CC-C
Q 009560 348 ------------------------V---------------------PLDILVPYYKQGYQIVRKYSPTAYVIVC--QR-I 379 (532)
Q Consensus 348 ------------------------~---------------------~~~~l~~~~~~~~~aIR~~~~~~~Viv~--~~-~ 379 (532)
+ ..+.+.++++...++||+++|+++|... +. .
T Consensus 161 ~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir~~~p~~~vt~n~~~~~~ 240 (374)
T PF02449_consen 161 GTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIREYDPDHPVTTNFMGSWF 240 (374)
T ss_dssp SSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-EEE-EE-TT--
T ss_pred CCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCcccccc
Confidence 0 0134677888899999999999887643 11 1
Q ss_pred CCCCchhhhhccCCCCcEEEEeeecccCCCccccCChhhhHHHHHHHHHHHHHHHHhcCCCcEEEeccCcc---cCCCCC
Q 009560 380 GNADPLELYQANIGLHNIVVDLHYYNLFDTFFVNMSTVDNILFIYKSREAQLQALNNANGPLVFIGEWVNE---WNVTSG 456 (532)
Q Consensus 380 ~~~~~~~~~~~~~~~~nvv~s~H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~g~pv~vGEwG~~---~~~~~a 456 (532)
...|...+. ..-.+++.+.|+...... ............+. +..+ +.+.|.+|.|.-.. |...+.
T Consensus 241 ~~~d~~~~a-----~~~D~~~~d~Y~~~~~~~-~~~~~~~~a~~~dl----~R~~--~~~kpf~v~E~~~g~~~~~~~~~ 308 (374)
T PF02449_consen 241 NGIDYFKWA-----KYLDVVSWDSYPDGSFDF-YDDDPYSLAFNHDL----MRSL--AKGKPFWVMEQQPGPVNWRPYNR 308 (374)
T ss_dssp -SS-HHHHG-----GGSSSEEEEE-HHHHHTT-TT--TTHHHHHHHH----HHHH--TTT--EEEEEE--S--SSSSS--
T ss_pred CcCCHHHHH-----hhCCcceeccccCcccCC-CCCCHHHHHHHHHH----HHhh--cCCCceEeecCCCCCCCCccCCC
Confidence 112222221 223567888887610000 00111111122111 1112 35788999999543 211111
Q ss_pred C--HHHHHHHHHHHHHHHHhCCCcEEEEcccCCCCCCchHhhHhCCcccCCCCCCccee
Q 009560 457 T--QKDYQDFGSAQLEVYNAASFGWAYWTLKNDRKHWDFEWNIRNNYLQLGNSPNMQIF 513 (532)
Q Consensus 457 ~--~~~~~~~~~~ql~~~~~~~~Gw~yW~~k~e~~~Ws~~~~~~~g~~~~~~~p~~~~~ 513 (532)
. +...+.+. ...+....-|-.||.|+.... ..| ..-.|++..+.++..+.|
T Consensus 309 ~~~pg~~~~~~---~~~~A~Ga~~i~~~~wr~~~~--g~E-~~~~g~~~~dg~~~~~~~ 361 (374)
T PF02449_consen 309 PPRPGELRLWS---WQAIAHGADGILFWQWRQSRF--GAE-QFHGGLVDHDGREPTRRY 361 (374)
T ss_dssp ---TTHHHHHH---HHHHHTT-S-EEEC-SB--SS--STT-TTS--SB-TTS--B-HHH
T ss_pred CCCCCHHHHHH---HHHHHHhCCeeEeeeccCCCC--Cch-hhhcccCCccCCCCCcHH
Confidence 1 11222222 123333556899999987411 111 233466666552334433
No 15
>PLN02814 beta-glucosidase
Probab=99.46 E-value=2e-13 Score=148.40 Aligned_cols=151 Identities=16% Similarity=0.191 Sum_probs=121.0
Q ss_pred CceEEeCCCCCCCC--CCC-CcceeeecccCCCCccceeecccChhhHHHHHHhhccccCCHHHHHHHHHcCCCEEEEcc
Q 009560 170 GNQLTSDYPGMPGW--DDN-AATFEMAIVANNLHGDYQLANGYGHERAKEVLKRHRNTFITIEDFNFLYRHGINTVRIPV 246 (532)
Q Consensus 170 ~~~v~ad~~~~~~W--~~~-ps~f~~~~~~~~~~~e~~l~~~~G~~~a~~~~~~hw~t~ite~d~~~la~~G~N~VRIpv 246 (532)
.|.-||.||.|+.| +++ ||++++.... ..+...+.|.+.++++ ++|++.||++|+|+.|+++
T Consensus 34 wG~AtaA~QiEGa~~~~gkg~siwD~~~~~---------~~~~~~~~a~D~Yhry------~EDI~L~k~lG~~ayRfSI 98 (504)
T PLN02814 34 FGAATSAYQWEGAVDEDGRTPSVWDTTSHC---------YNGGNGDIASDGYHKY------KEDVKLMAEMGLESFRFSI 98 (504)
T ss_pred EeeechhhhhcCCcCCCCCccchhheeeec---------cCCCCCCccccHHHhh------HHHHHHHHHcCCCEEEEec
Confidence 45567889999999 454 9999974321 1223446688888888 9999999999999999999
Q ss_pred ccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCC-CCCCCChhhHHHHHHHHHHHH
Q 009560 247 GWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDG-TTDWPASDYISQTLDVIDFLA 325 (532)
Q Consensus 247 ~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g-~~~W~~~~~~~~~~~~w~~la 325 (532)
.|..++ |+..+..+++++++++++|+.|.++||.++|+||| |+.+-.... ...|.+++..+.++++.+.++
T Consensus 99 sWsRI~-P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H-------~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f 170 (504)
T PLN02814 99 SWSRLI-PNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYH-------YDLPQSLEDEYGGWINRKIIEDFTAFADVCF 170 (504)
T ss_pred cHhhcC-cCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecC-------CCCCHHHHHhcCCcCChhHHHHHHHHHHHHH
Confidence 996554 43334568899999999999999999999999999 444432222 368999999999999999999
Q ss_pred HHhCCCCcEEEEEeccCCCC
Q 009560 326 SRYAKHPALLGIELLNEPSA 345 (532)
Q Consensus 326 ~ry~~~p~v~g~EL~NEP~~ 345 (532)
++|++....+. .+|||..
T Consensus 171 ~~fgdrVk~Wi--T~NEP~~ 188 (504)
T PLN02814 171 REFGEDVKLWT--TINEATI 188 (504)
T ss_pred HHhCCcCCEEE--eccccch
Confidence 99999877654 9999984
No 16
>PLN02998 beta-glucosidase
Probab=99.46 E-value=3.4e-13 Score=146.37 Aligned_cols=153 Identities=14% Similarity=0.185 Sum_probs=121.0
Q ss_pred CceEEeCCCCCCCC--CCC-CcceeeecccCCCCccceeecccChhhHHHHHHhhccccCCHHHHHHHHHcCCCEEEEcc
Q 009560 170 GNQLTSDYPGMPGW--DDN-AATFEMAIVANNLHGDYQLANGYGHERAKEVLKRHRNTFITIEDFNFLYRHGINTVRIPV 246 (532)
Q Consensus 170 ~~~v~ad~~~~~~W--~~~-ps~f~~~~~~~~~~~e~~l~~~~G~~~a~~~~~~hw~t~ite~d~~~la~~G~N~VRIpv 246 (532)
.|.-||.||.|+.| +++ ||+|+..... +. ......+.|.+.++++ ++|++.||++|+|+.|++|
T Consensus 37 wG~AtSA~QvEGa~~~~Gkg~siwD~~~~~-~~------~~~~~~~~a~D~Yhry------~EDi~lmk~lG~~~YRfSI 103 (497)
T PLN02998 37 FGSGTSAYQVEGAADEDGRTPSIWDVFAHA-GH------SGVAAGNVACDQYHKY------KEDVKLMADMGLEAYRFSI 103 (497)
T ss_pred EeeechHHHhCCCcCCCCCccchhhccccc-Cc------CCCCCCcccccHHHhh------HHHHHHHHHcCCCeEEeec
Confidence 45567889999999 555 9999974321 11 1112345688888887 9999999999999999999
Q ss_pred ccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCC-CCCCCChhhHHHHHHHHHHHH
Q 009560 247 GWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDG-TTDWPASDYISQTLDVIDFLA 325 (532)
Q Consensus 247 ~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g-~~~W~~~~~~~~~~~~w~~la 325 (532)
.|..++ |+..++++++++++++++|+.+.++||.+||+||| |+.+..... ...|.+++..+.|.++.+.++
T Consensus 104 sWsRI~-P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H-------~dlP~~L~~~yGGW~n~~~v~~F~~YA~~~~ 175 (497)
T PLN02998 104 SWSRLL-PSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHH-------FDLPQALEDEYGGWLSQEIVRDFTAYADTCF 175 (497)
T ss_pred cHHhcC-cCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecC-------CCCCHHHHHhhCCcCCchHHHHHHHHHHHHH
Confidence 996554 43334578899999999999999999999999999 444432222 368999999999999999999
Q ss_pred HHhCCCCcEEEEEeccCCCC
Q 009560 326 SRYAKHPALLGIELLNEPSA 345 (532)
Q Consensus 326 ~ry~~~p~v~g~EL~NEP~~ 345 (532)
+||++....+. .+|||..
T Consensus 176 ~~fgdrVk~Wi--T~NEP~~ 193 (497)
T PLN02998 176 KEFGDRVSHWT--TINEVNV 193 (497)
T ss_pred HHhcCcCCEEE--EccCcch
Confidence 99999877754 9999985
No 17
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=99.45 E-value=2.7e-13 Score=146.80 Aligned_cols=161 Identities=14% Similarity=0.205 Sum_probs=121.0
Q ss_pred CceEEeCCCCCCCC--CCC-Ccceeeeccc-CCCCccc--eeecc--cChhhHHHHHHhhccccCCHHHHHHHHHcCCCE
Q 009560 170 GNQLTSDYPGMPGW--DDN-AATFEMAIVA-NNLHGDY--QLANG--YGHERAKEVLKRHRNTFITIEDFNFLYRHGINT 241 (532)
Q Consensus 170 ~~~v~ad~~~~~~W--~~~-ps~f~~~~~~-~~~~~e~--~l~~~--~G~~~a~~~~~~hw~t~ite~d~~~la~~G~N~ 241 (532)
.|.-||.||.|+.| +++ ||+++..... ....+.. ....+ +..+.|.+.++++ ++|++.||++|+|+
T Consensus 10 wG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry------~eDi~Lm~~lG~~~ 83 (476)
T PRK09589 10 WGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRY------KEDIALFAEMGFKC 83 (476)
T ss_pred EeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhh------HHHHHHHHHcCCCE
Confidence 34567889999999 555 9999974411 0000100 01011 2446788888888 99999999999999
Q ss_pred EEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCC-CCCCCCChhhHHHHHHH
Q 009560 242 VRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRD-GTTDWPASDYISQTLDV 320 (532)
Q Consensus 242 VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~-g~~~W~~~~~~~~~~~~ 320 (532)
.|++|.|..+++...++..+++.+++++++|+.|.++||.++|+||| |+.+-... ....|.+++..+.|+++
T Consensus 84 yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H-------~dlP~~L~~~yGGW~n~~~i~~F~~Y 156 (476)
T PRK09589 84 FRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSH-------FEMPYHLVTEYGGWRNRKLIDFFVRF 156 (476)
T ss_pred EEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC-------CCCCHHHHHhcCCcCChHHHHHHHHH
Confidence 99999996654432233458889999999999999999999999999 44432221 23679999999999999
Q ss_pred HHHHHHHhCCCCcEEEEEeccCCCC
Q 009560 321 IDFLASRYAKHPALLGIELLNEPSA 345 (532)
Q Consensus 321 w~~la~ry~~~p~v~g~EL~NEP~~ 345 (532)
.+.++++|++....+. .+|||..
T Consensus 157 A~~~f~~fgdrVk~Wi--T~NEp~~ 179 (476)
T PRK09589 157 AEVVFTRYKDKVKYWM--TFNEINN 179 (476)
T ss_pred HHHHHHHhcCCCCEEE--Eecchhh
Confidence 9999999999877654 9999973
No 18
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=99.44 E-value=3.8e-13 Score=145.69 Aligned_cols=161 Identities=14% Similarity=0.220 Sum_probs=121.1
Q ss_pred CceEEeCCCCCCCC--CCC-CcceeeecccC-CC---Cccc---eeecc--cChhhHHHHHHhhccccCCHHHHHHHHHc
Q 009560 170 GNQLTSDYPGMPGW--DDN-AATFEMAIVAN-NL---HGDY---QLANG--YGHERAKEVLKRHRNTFITIEDFNFLYRH 237 (532)
Q Consensus 170 ~~~v~ad~~~~~~W--~~~-ps~f~~~~~~~-~~---~~e~---~l~~~--~G~~~a~~~~~~hw~t~ite~d~~~la~~ 237 (532)
.|.-||.||.++.| +++ ||+|+...... .+ .++- ...++ +..+.|.+.++++ ++|++.||++
T Consensus 12 wG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry------~eDi~Lm~~l 85 (478)
T PRK09593 12 WGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHY------KEDIALFAEM 85 (478)
T ss_pred EeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhh------HHHHHHHHHc
Confidence 34567889999999 555 99999733210 01 0000 00001 1346688888888 9999999999
Q ss_pred CCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCC-CCCCCCChhhHHH
Q 009560 238 GINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRD-GTTDWPASDYISQ 316 (532)
Q Consensus 238 G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~-g~~~W~~~~~~~~ 316 (532)
|+|+.|++|.|..+++...+...+++++++++++|+.+.++||.++|+||| |+.+.... ....|.+++..+.
T Consensus 86 G~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H-------~dlP~~L~~~~GGW~n~~~v~~ 158 (478)
T PRK09593 86 GFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITH-------FDCPMHLIEEYGGWRNRKMVGF 158 (478)
T ss_pred CCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecc-------cCCCHHHHhhcCCCCChHHHHH
Confidence 999999999996554432233468889999999999999999999999998 44443222 2368999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeccCCCC
Q 009560 317 TLDVIDFLASRYAKHPALLGIELLNEPSA 345 (532)
Q Consensus 317 ~~~~w~~la~ry~~~p~v~g~EL~NEP~~ 345 (532)
|.++.+.+++||++....+. .+|||..
T Consensus 159 F~~YA~~~~~~fgdrVk~Wi--T~NEP~~ 185 (478)
T PRK09593 159 YERLCRTLFTRYKGLVKYWL--TFNEINM 185 (478)
T ss_pred HHHHHHHHHHHhcCcCCEEE--eecchhh
Confidence 99999999999999877755 9999974
No 19
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=99.39 E-value=2e-13 Score=147.65 Aligned_cols=184 Identities=16% Similarity=0.214 Sum_probs=128.6
Q ss_pred ceEEeCCCCCCCC--CCC-CcceeeecccCCCCccceeecccChhhHHHHHHhhccccCCHHHHHHHHHcCCCEEEEccc
Q 009560 171 NQLTSDYPGMPGW--DDN-AATFEMAIVANNLHGDYQLANGYGHERAKEVLKRHRNTFITIEDFNFLYRHGINTVRIPVG 247 (532)
Q Consensus 171 ~~v~ad~~~~~~W--~~~-ps~f~~~~~~~~~~~e~~l~~~~G~~~a~~~~~~hw~t~ite~d~~~la~~G~N~VRIpv~ 247 (532)
|--||.||.|+.| +++ ||+|+..... +. +...+...+.|.+.++.+ ++||+.||++|+|+.|+++.
T Consensus 12 G~atsa~Q~EG~~~~dGkg~s~wd~~~~~-~~----~~~~~~~~~~a~d~y~~y------~eDi~l~~~lg~~~yRfsi~ 80 (455)
T PF00232_consen 12 GVATSAYQIEGAWNEDGKGPSIWDTFCHE-PG----KVEDGSTGDVACDHYHRY------KEDIALMKELGVNAYRFSIS 80 (455)
T ss_dssp EEE--HHHHSSSTTSTTSTTBHHHHHHHS-TT----SSTTSSSSSSTTGHHHHH------HHHHHHHHHHT-SEEEEE--
T ss_pred EEeceeccccceecCCCCCcccccccccc-cc----eeeccccCcccccchhhh------hHHHHHHHhhccceeeeecc
Confidence 4456789999999 455 8999965433 11 112233356678888777 99999999999999999999
Q ss_pred cccccCCCC-CCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHH
Q 009560 248 WWIAFDPDP-PAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLAS 326 (532)
Q Consensus 248 ww~~~~~~~-~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ 326 (532)
|-. +.|++ .+..++..++.++++|+.++++||++||+|||. +.+........|.+++..+.++++.+.+++
T Consensus 81 W~R-i~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~-------~~P~~l~~~ggw~~~~~~~~F~~Ya~~~~~ 152 (455)
T PF00232_consen 81 WSR-IFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHF-------DLPLWLEDYGGWLNRETVDWFARYAEFVFE 152 (455)
T ss_dssp HHH-HSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS---------BHHHHHHTGGGSTHHHHHHHHHHHHHHH
T ss_pred hhh-eeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeec-------ccccceeecccccCHHHHHHHHHHHHHHHH
Confidence 854 45554 457788999999999999999999999999983 333211123579999999999999999999
Q ss_pred HhCCCCcEEEEEeccCCCCC--------CC--Cccc----------HHHHHHHHHHHHHhhCCCcEEEE
Q 009560 327 RYAKHPALLGIELLNEPSAA--------TV--PLDI----------LVPYYKQGYQIVRKYSPTAYVIV 375 (532)
Q Consensus 327 ry~~~p~v~g~EL~NEP~~~--------~~--~~~~----------l~~~~~~~~~aIR~~~~~~~Viv 375 (532)
+|++....+. .+|||... .. .... +.....++++++|+..++..|-+
T Consensus 153 ~~gd~V~~w~--T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~~~IGi 219 (455)
T PF00232_consen 153 RFGDRVKYWI--TFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPDGKIGI 219 (455)
T ss_dssp HHTTTBSEEE--EEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCTSEEEE
T ss_pred HhCCCcceEE--eccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccceEEec
Confidence 9999877754 99999751 00 1112 33334557788899888766533
No 20
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.34 E-value=1.6e-10 Score=129.57 Aligned_cols=227 Identities=20% Similarity=0.180 Sum_probs=140.2
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCC--CCCCCCCCCCCCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHA--APGSQNGMEHSASRDGT 305 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~--~pGsqn~~~~sg~~~g~ 305 (532)
+.||+.||++|+|+||+.- . |. . .++++.|-++||.|+-++-. ..... +....+.....
T Consensus 316 ~~d~~l~K~~G~N~vR~sh-----~---p~---~-------~~~~~~cD~~GllV~~E~p~~~~~~~~-~~~~~~~~~~~ 376 (604)
T PRK10150 316 VHDHNLMKWIGANSFRTSH-----Y---PY---S-------EEMLDLADRHGIVVIDETPAVGLNLSF-GAGLEAGNKPK 376 (604)
T ss_pred HHHHHHHHHCCCCEEEecc-----C---CC---C-------HHHHHHHHhcCcEEEEecccccccccc-ccccccccccc
Confidence 5789999999999999931 1 11 1 16789999999999987621 10000 00000000011
Q ss_pred CCCC----ChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEeCCCCC
Q 009560 306 TDWP----ASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQRIGN 381 (532)
Q Consensus 306 ~~W~----~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~~~~~ 381 (532)
..|. +++..+...+.++.+.+|++++|+|++|.+.|||.. ..+....+++++++.+|+.||+++|.......
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~---~~~~~~~~~~~l~~~~k~~DptR~vt~~~~~~- 452 (604)
T PRK10150 377 ETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPAS---REQGAREYFAPLAELTRKLDPTRPVTCVNVMF- 452 (604)
T ss_pred ccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCc---cchhHHHHHHHHHHHHHhhCCCCceEEEeccc-
Confidence 1222 346778888999999999999999999999999864 23466789999999999999999998764211
Q ss_pred CCchhhhhccCCCCcEEEEeeecccCCCccccCChhhhHHHHHHHHHHHHHHHHhcCCCcEEEeccCcccC-------CC
Q 009560 382 ADPLELYQANIGLHNIVVDLHYYNLFDTFFVNMSTVDNILFIYKSREAQLQALNNANGPLVFIGEWVNEWN-------VT 454 (532)
Q Consensus 382 ~~~~~~~~~~~~~~nvv~s~H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~g~pv~vGEwG~~~~-------~~ 454 (532)
..+. .......-.|+++|.|..+..... ... .........+..+.+..++|++++|||+... ..
T Consensus 453 ~~~~---~~~~~~~~Dv~~~N~Y~~wy~~~~--~~~----~~~~~~~~~~~~~~~~~~kP~~isEyg~~~~~~~h~~~~~ 523 (604)
T PRK10150 453 ATPD---TDTVSDLVDVLCLNRYYGWYVDSG--DLE----TAEKVLEKELLAWQEKLHKPIIITEYGADTLAGLHSMYDD 523 (604)
T ss_pred CCcc---cccccCcccEEEEcccceecCCCC--CHH----HHHHHHHHHHHHHHHhcCCCEEEEccCCccccccccCCCC
Confidence 1110 000123357889888765321110 111 1111222223333333378999999996321 11
Q ss_pred CCCHHHHHHHHHHHHHHHHh--CCCcEEEEcccC
Q 009560 455 SGTQKDYQDFGSAQLEVYNA--ASFGWAYWTLKN 486 (532)
Q Consensus 455 ~a~~~~~~~~~~~ql~~~~~--~~~Gw~yW~~k~ 486 (532)
..+.+....+++....++++ .-+|-+.|++..
T Consensus 524 ~~~ee~q~~~~~~~~~~~~~~p~~~G~~iW~~~D 557 (604)
T PRK10150 524 MWSEEYQCAFLDMYHRVFDRVPAVVGEQVWNFAD 557 (604)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCceEEEEEEeeec
Confidence 22334445667777777764 567999999775
No 21
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=1.8e-11 Score=127.33 Aligned_cols=276 Identities=14% Similarity=0.134 Sum_probs=181.4
Q ss_pred cChhhHHHHHHhhccccCCHHHHHHHHHcCCCEEEEccccccccCCCC-----CCCCCcChHHHHHHHHHHHHHcCCEEE
Q 009560 209 YGHERAKEVLKRHRNTFITIEDFNFLYRHGINTVRIPVGWWIAFDPDP-----PAPFIGGSLEALDNALSWAEAYNIKCI 283 (532)
Q Consensus 209 ~G~~~a~~~~~~hw~t~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~-----~~~~~~~~l~~Ld~~v~~a~k~Gi~VI 283 (532)
+-+-.|..-|-.||...--++|++.++..|++.+|+-+ .|.++ +....+..+.+++..++.|...+|+|+
T Consensus 10 ~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~fi-----LDgEdc~d~~G~~na~s~~~y~~~fla~a~~l~lkvl 84 (587)
T COG3934 10 RWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLFI-----LDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYLDLKVL 84 (587)
T ss_pred cchhhhhhhHHHHhhhhhhhcccccccCccceeEEEEE-----ecCcchhhhhceecccccHHHHHHHhhhcccCcceEE
Confidence 34445556666777765667899999999999999942 33222 222223349999999999999999999
Q ss_pred EEcCCCCCCCCCCCCCCCCCCCCCCC----------ChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCC-CCCCccc
Q 009560 284 IDLHAAPGSQNGMEHSASRDGTTDWP----------ASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSA-ATVPLDI 352 (532)
Q Consensus 284 LDlH~~pGsqn~~~~sg~~~g~~~W~----------~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~-~~~~~~~ 352 (532)
|.+-. +++|-|.+.-...|. ++..+..+.++.+.+.+.||.+|.+.+|++-|||.. ...+...
T Consensus 85 itliv------g~~hmgg~Nw~Ipwag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~ 158 (587)
T COG3934 85 ITLIV------GLKHMGGTNWRIPWAGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNN 158 (587)
T ss_pred EEEee------cccccCcceeEeecCCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccccccCChhH
Confidence 99863 344444332223333 356677789999999999999999999999999887 3456778
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCchhhhhccCCCCcEEEEeeecccCCCccccCChhhhHHHHHHHHHHHHH
Q 009560 353 LVPYYKQGYQIVRKYSPTAYVIVCQRIGNADPLELYQANIGLHNIVVDLHYYNLFDTFFVNMSTVDNILFIYKSREAQLQ 432 (532)
Q Consensus 353 l~~~~~~~~~aIR~~~~~~~Viv~~~~~~~~~~~~~~~~~~~~nvv~s~H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~ 432 (532)
+..|...++..|+..||+|+|-+++... . ...+.+......-..-+.|.|.-|+.+. -.++...+. +.+.
T Consensus 159 f~~w~~emy~yiK~ldd~hlvsvGD~~s-p-~~~~~pyN~r~~vDya~~hLY~hyd~sl---~~r~s~~yg-----~~~l 228 (587)
T COG3934 159 FWDWSGEMYAYIKWLDDGHLVSVGDPAS-P-WPQYAPYNARFYVDYAANHLYRHYDTSL---VSRVSTVYG-----KPYL 228 (587)
T ss_pred HHHHHHHHHHHhhccCCCCeeecCCcCC-c-ccccCCcccceeeccccchhhhhccCCh---hheeeeeec-----chhh
Confidence 9999999999999999999999886431 1 1111111111112235678886444321 011111111 1111
Q ss_pred HHHhcCC-CcEEEeccCcccCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEcccCC-----CCCCchH-hhHhCCcccCC
Q 009560 433 ALNNANG-PLVFIGEWVNEWNVTSGTQKDYQDFGSAQLEVYNAASFGWAYWTLKND-----RKHWDFE-WNIRNNYLQLG 505 (532)
Q Consensus 433 ~~~~~~g-~pv~vGEwG~~~~~~~a~~~~~~~~~~~ql~~~~~~~~Gw~yW~~k~e-----~~~Ws~~-~~~~~g~~~~~ 505 (532)
+..+.-| .||++-|||............|..|... ++.-.+-|-.+|++.+- .+.-.+. ..++.|+|.-+
T Consensus 229 ~i~~~~g~~pV~leefGfsta~g~e~s~ayfiw~~l---al~~ggdGaLiwclsdf~~gsdd~ey~w~p~el~fgiIrad 305 (587)
T COG3934 229 DIPTIMGWQPVNLEEFGFSTAFGQENSPAYFIWIRL---ALDTGGDGALIWCLSDFHLGSDDSEYTWGPMELEFGIIRAD 305 (587)
T ss_pred ccchhcccceeeccccCCcccccccccchhhhhhhh---HHhhcCCceEEEEecCCccCCCCCCCccccccceeeeecCC
Confidence 2223335 8999999998866544445567777665 55557889999999873 2333333 46788888755
Q ss_pred CCC
Q 009560 506 NSP 508 (532)
Q Consensus 506 ~~p 508 (532)
.+|
T Consensus 306 gpe 308 (587)
T COG3934 306 GPE 308 (587)
T ss_pred Cch
Confidence 544
No 22
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=99.24 E-value=2.2e-11 Score=129.60 Aligned_cols=155 Identities=15% Similarity=0.227 Sum_probs=124.2
Q ss_pred eEEeCCCCCCCC--CCC-CcceeeecccCCCCccceeecccChhhHHHHHHhhccccCCHHHHHHHHHcCCCEEEEcccc
Q 009560 172 QLTSDYPGMPGW--DDN-AATFEMAIVANNLHGDYQLANGYGHERAKEVLKRHRNTFITIEDFNFLYRHGINTVRIPVGW 248 (532)
Q Consensus 172 ~v~ad~~~~~~W--~~~-ps~f~~~~~~~~~~~e~~l~~~~G~~~a~~~~~~hw~t~ite~d~~~la~~G~N~VRIpv~w 248 (532)
.-||.||.|+.+ ++. ||+|+...... .+ ..+..-..+.|.+.++.+ ++|++.|+++|+++.|++|+|
T Consensus 45 tAtSAyQ~EGA~~e~gRg~svWD~f~~~~---p~-~~~~~~ngdva~D~Yh~y------keDv~Lmk~lgv~afRFSIsW 114 (524)
T KOG0626|consen 45 TATSAYQVEGAANEDGRGPSVWDTFTHKY---PG-KICDGSNGDVAVDFYHRY------KEDVKLMKELGVDAFRFSISW 114 (524)
T ss_pred ccchHHHhhhhhccCCCCCchhhhhhccC---Cc-ccccCCCCCeechhhhhh------HHHHHHHHHcCCCeEEEEeeh
Confidence 346679999999 444 99999655332 12 344455568899999988 999999999999999999999
Q ss_pred ccccCCCC-CCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCC-CCCCCCCChhhHHHHHHHHHHHHH
Q 009560 249 WIAFDPDP-PAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASR-DGTTDWPASDYISQTLDVIDFLAS 326 (532)
Q Consensus 249 w~~~~~~~-~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~-~g~~~W~~~~~~~~~~~~w~~la~ 326 (532)
..+++... ....++++++++..+|+...++||.++|+|.| |+.+-.. +....|.+++..+.+.++.+.+.+
T Consensus 115 SRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfH-------wDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~ 187 (524)
T KOG0626|consen 115 SRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFH-------WDLPQALEDEYGGWLNPEIVEDFRDYADLCFQ 187 (524)
T ss_pred HhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEec-------CCCCHHHHHHhccccCHHHHHHHHHHHHHHHH
Confidence 76655443 34567889999999999999999999999998 5554322 336789999999999999999999
Q ss_pred HhCCCCcEEEEEeccCCCC
Q 009560 327 RYAKHPALLGIELLNEPSA 345 (532)
Q Consensus 327 ry~~~p~v~g~EL~NEP~~ 345 (532)
+|+|.... |-.+|||..
T Consensus 188 ~fGDrVK~--WiT~NEP~v 204 (524)
T KOG0626|consen 188 EFGDRVKH--WITFNEPNV 204 (524)
T ss_pred Hhccccee--eEEecccce
Confidence 99998766 459999983
No 23
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=99.17 E-value=1.2e-10 Score=102.77 Aligned_cols=86 Identities=24% Similarity=0.410 Sum_probs=73.2
Q ss_pred cccccccCCcccccceEEEEEecCCeEEEEecCCCceeEEcCCCCCCcceEEEEEecCCeEEEEecCCeEEEEeCCCceE
Q 009560 53 SLFDGILNGDMLDGTQVQIKSVTLEKYVCAESGGGTDVSVTRDVASSWETFTLWRVSESEFQFRTSQGQFLTCDGEGCVV 132 (532)
Q Consensus 53 ~~~~~~~~~~~~~g~~v~~~s~~~~~yv~ae~gg~~~l~anr~~~~~wE~f~~~~~~~~~~~lr~~~~~~v~~~~~g~~~ 132 (532)
..|+-.+.. ...|+||| .+||||+++..| .|.|+++ ++.+|+|++-..+++.++||+.||+||+++.+| .|
T Consensus 34 e~F~l~~~~----~g~v~Lrs-~~G~yls~~~~g--~l~~~~~-~~~~e~F~~e~~~~g~~al~~~~G~yl~~~~~g-~l 104 (119)
T cd00257 34 ETFTLEFDN----TGKYALRS-HDGKYLSADSDG--GVQLEGH-PNADCRFTLEFHGDGKWALRAENGRYLGGDGSG-TL 104 (119)
T ss_pred eEEEEEECC----CCeEEEEE-CCCcEEEEECCC--CEEecCC-CCCCcEEEEEECCCCeEEEEcCCCCEEeecCCC-eE
Confidence 456643333 47899998 799999999866 5899999 999999997667779999999999999998877 59
Q ss_pred EEeecCCCCCceEEE
Q 009560 133 SATAKSPSTPETFEI 147 (532)
Q Consensus 133 ~a~~~~~~~~e~F~~ 147 (532)
.|++++++++|.|.+
T Consensus 105 ~~~~~~~~~~e~f~~ 119 (119)
T cd00257 105 KASSETVGPDELFEL 119 (119)
T ss_pred EEecCCCCccceecC
Confidence 999999999999974
No 24
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.15 E-value=2.4e-09 Score=109.64 Aligned_cols=121 Identities=17% Similarity=0.281 Sum_probs=85.5
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTD 307 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~ 307 (532)
+.|+..||++|+|+||+.- . |+. .+.++.|.++||.|+.++-... . ..+...+. ....
T Consensus 39 ~~d~~l~k~~G~N~iR~~h-----~---p~~----------~~~~~~cD~~GilV~~e~~~~~-~-~~~~~~~~--~~~~ 96 (298)
T PF02836_consen 39 ERDLELMKEMGFNAIRTHH-----Y---PPS----------PRFYDLCDELGILVWQEIPLEG-H-GSWQDFGN--CNYD 96 (298)
T ss_dssp HHHHHHHHHTT-SEEEETT-----S-----S----------HHHHHHHHHHT-EEEEE-S-BS-C-TSSSSTSC--TSCT
T ss_pred HHHHHHHHhcCcceEEccc-----c---cCc----------HHHHHHHhhcCCEEEEeccccc-c-CccccCCc--cccC
Confidence 7899999999999999832 1 111 2778899999999999875410 0 01111110 0011
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEeCC
Q 009560 308 WPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQR 378 (532)
Q Consensus 308 W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~~ 378 (532)
-.++...+.+.+-++.+.+|++++|+|+.|.+.||+ ....+++++++.+|+.||+++|.....
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~--------~~~~~~~~l~~~~k~~DptRpv~~~~~ 159 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES--------DYREFLKELYDLVKKLDPTRPVTYASN 159 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS--------HHHHHHHHHHHHHHHH-TTSEEEEETG
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC--------ccccchhHHHHHHHhcCCCCceeeccc
Confidence 124677888899999999999999999999999999 567788999999999999999887643
No 25
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=99.06 E-value=1e-09 Score=96.04 Aligned_cols=87 Identities=25% Similarity=0.396 Sum_probs=73.6
Q ss_pred cccccccCCcccccceEEEEEecCCeEEEEecCCCceeEEcCCCCCCcceEEEEEecCCeEEEEecCCeEEEEeCCCceE
Q 009560 53 SLFDGILNGDMLDGTQVQIKSVTLEKYVCAESGGGTDVSVTRDVASSWETFTLWRVSESEFQFRTSQGQFLTCDGEGCVV 132 (532)
Q Consensus 53 ~~~~~~~~~~~~~g~~v~~~s~~~~~yv~ae~gg~~~l~anr~~~~~wE~f~~~~~~~~~~~lr~~~~~~v~~~~~g~~~ 132 (532)
.+|+-..... +..|.||+ .+|||+|++..| .|+|++..++.|++|+|..- ++.+.||+.||+||++..+|. |
T Consensus 25 e~f~le~~~~---~~~v~lrs-~~GkYls~~~~G--~v~~~~~~~~~~~~F~i~~~-~~~~~~~~~nGkYl~~~~~g~-l 96 (111)
T PF06268_consen 25 ETFQLEFDDG---SYKVALRS-HNGKYLSVDSDG--SVVADSETPGPDEFFEIEWH-GGKVALRASNGKYLSAGPNGQ-L 96 (111)
T ss_dssp GSEEEEEETT---EEEEEEEC-TTSEEEEEETTS--EEEEEESSSSGGGCBEEEEE-TTEEEEECTTSCEEEEETTTE-E
T ss_pred EEEEEEEECC---CCEEEEEc-CCCCEEEEcCCC--eEEecCCCCCCCcEEEEEEC-CCEEEEECCCCCEEeeCCCCe-E
Confidence 6677432222 57778997 899999999886 79999999999999995555 888999999999999988885 9
Q ss_pred EEeecCCCCCceEEE
Q 009560 133 SATAKSPSTPETFEI 147 (532)
Q Consensus 133 ~a~~~~~~~~e~F~~ 147 (532)
.|++++|+++|.|++
T Consensus 97 ~a~~~~~~~~elf~~ 111 (111)
T PF06268_consen 97 KANATSPGKDELFEY 111 (111)
T ss_dssp EEEESSSSGGGEEEE
T ss_pred EEcCCCCCcceEEeC
Confidence 999999999999985
No 26
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.04 E-value=2.8e-08 Score=99.59 Aligned_cols=206 Identities=17% Similarity=0.214 Sum_probs=129.6
Q ss_pred cccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCC----hhhHHHHHHHHHHHH
Q 009560 250 IAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPA----SDYISQTLDVIDFLA 325 (532)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~----~~~~~~~~~~w~~la 325 (532)
...+|.++ .| .++.+|+++++|+++||+| ..|..- .+. ..+.|.. ++..+.+.++++.++
T Consensus 4 ~~~ep~~G-~~---n~~~~D~~~~~a~~~gi~v--~gH~l~------W~~----~~P~W~~~~~~~~~~~~~~~~i~~v~ 67 (254)
T smart00633 4 DSTEPSRG-QF---NFSGADAIVNFAKENGIKV--RGHTLV------WHS----QTPDWVFNLSKETLLARLENHIKTVV 67 (254)
T ss_pred ccccCCCC-cc---ChHHHHHHHHHHHHCCCEE--EEEEEe------ecc----cCCHhhhcCCHHHHHHHHHHHHHHHH
Confidence 34455544 33 5899999999999999998 334320 010 1123432 356788999999999
Q ss_pred HHhCCCCcEEEEEeccCCCCCCCC---cccH-----HHHHHHHHHHHHhhCCCcEEEEeCCC-CCC--Cc---hhhh---
Q 009560 326 SRYAKHPALLGIELLNEPSAATVP---LDIL-----VPYYKQGYQIVRKYSPTAYVIVCQRI-GNA--DP---LELY--- 388 (532)
Q Consensus 326 ~ry~~~p~v~g~EL~NEP~~~~~~---~~~l-----~~~~~~~~~aIR~~~~~~~Viv~~~~-~~~--~~---~~~~--- 388 (532)
+||++. +..||++|||...+.. ...| .+|+..+++++|+++|+..+++.+.- -+. .. ..+.
T Consensus 68 ~ry~g~--i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy~~~~~~~k~~~~~~~v~~l 145 (254)
T smart00633 68 GRYKGK--IYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDYNTEEPNAKRQAIYELVKKL 145 (254)
T ss_pred HHhCCc--ceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEeccCCcCccHHHHHHHHHHHHH
Confidence 999975 6679999999864211 0012 27889999999999999999987521 011 11 1111
Q ss_pred -hccCCCCcEEEEeeecccCCCccccCChhhhHHHHHHHHHHHHHHHHhcCCCcEEEeccCcccCCCCCCHHHHHHHHHH
Q 009560 389 -QANIGLHNIVVDLHYYNLFDTFFVNMSTVDNILFIYKSREAQLQALNNANGPLVFIGEWVNEWNVTSGTQKDYQDFGSA 467 (532)
Q Consensus 389 -~~~~~~~nvv~s~H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~g~pv~vGEwG~~~~~~~a~~~~~~~~~~~ 467 (532)
....+.+-+-+..|.+... .+. ..+ .+.+..+.+. |.||+|+|+...... +.+...+++++
T Consensus 146 ~~~g~~iDgiGlQ~H~~~~~------~~~----~~~----~~~l~~~~~~-g~pi~iTE~dv~~~~---~~~~qA~~~~~ 207 (254)
T smart00633 146 KAKGVPIDGIGLQSHLSLGS------PNI----AEI----RAALDRFASL-GLEIQITELDISGYP---NPQAQAADYEE 207 (254)
T ss_pred HHCCCccceeeeeeeecCCC------CCH----HHH----HHHHHHHHHc-CCceEEEEeecCCCC---cHHHHHHHHHH
Confidence 1113355666777876321 111 222 2334445444 789999999987532 22445566777
Q ss_pred HHHHHHh--CCCcEEEEcccCCCCCCc
Q 009560 468 QLEVYNA--ASFGWAYWTLKNDRKHWD 492 (532)
Q Consensus 468 ql~~~~~--~~~Gw~yW~~k~e~~~Ws 492 (532)
++.++-+ ...|.++|.+.. ...|.
T Consensus 208 ~l~~~~~~p~v~gi~~Wg~~d-~~~W~ 233 (254)
T smart00633 208 VFKACLAHPAVTGVTVWGVTD-KYSWL 233 (254)
T ss_pred HHHHHHcCCCeeEEEEeCCcc-CCccc
Confidence 7766654 457999999886 45664
No 27
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD). FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.
Probab=98.96 E-value=4.4e-09 Score=100.11 Aligned_cols=100 Identities=21% Similarity=0.392 Sum_probs=63.8
Q ss_pred EEEecCCeEEEEecCCCceeEEcCCCCCCcceEEEEEe-cCCeEEEEecCCeEEEEeCCCceEEEeecCCCCCceEEEEE
Q 009560 71 IKSVTLEKYVCAESGGGTDVSVTRDVASSWETFTLWRV-SESEFQFRTSQGQFLTCDGEGCVVSATAKSPSTPETFEIER 149 (532)
Q Consensus 71 ~~s~~~~~yv~ae~gg~~~l~anr~~~~~wE~f~~~~~-~~~~~~lr~~~~~~v~~~~~g~~~~a~~~~~~~~e~F~~v~ 149 (532)
+.+..||.|.++|.- ++ .......|.|...++ ++++|+||+.+|+|++|+..|. |+|+++++|+.|+|++|.
T Consensus 4 i~a~d~G~~t~~ePh---d~---~~~p~p~qV~va~~v~~~~~iafKs~~GkYLs~Dk~G~-v~a~sdAiGp~E~f~~V~ 76 (191)
T PF06229_consen 4 IEALDNGLFTTGEPH---DV---GEGPDPRQVWVATRVPGDEKIAFKSGHGKYLSCDKDGI-VSARSDAIGPQEQFEPVF 76 (191)
T ss_dssp EEE-TTS-EEE-------SS---S----TTT-EEEEE--SSS-EEEEETTS-BEEE-SSSB-EEE--SS--TTTBEEEE-
T ss_pred eeeeccCCccccCCC---cC---CCCCChhHeEEEEEecCCCceEeeccCccEEEEcCCCc-EEEEeecCCCceEEEEEE
Confidence 567788889998886 22 455668999999999 8888999999999999999996 999999999999999999
Q ss_pred cCCCcEEEEe-cCCceEEeccCceEEeCCC
Q 009560 150 NNDSRVHIKL-KSGTYLQATLGNQLTSDYP 178 (532)
Q Consensus 150 ~~~~~v~i~a-~nG~~l~a~~~~~v~ad~~ 178 (532)
. +++..+.+ .|++||+++..+-+.|+-.
T Consensus 77 ~-~~~~a~~~~~~~~FLs~~~~~~i~a~s~ 105 (191)
T PF06229_consen 77 Q-DGKPALFSSSNNKFLSVDEEGDIRADSK 105 (191)
T ss_dssp S-TT--EEEE-TTS-BEEE-SSS-EEE--S
T ss_pred C-CCCeEEEecCCCeEEEEecccCeeeccc
Confidence 8 56777777 9999999998777777754
No 28
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.92 E-value=5.3e-09 Score=114.27 Aligned_cols=270 Identities=15% Similarity=0.158 Sum_probs=134.6
Q ss_pred CCccceeecccChhhHHHHHHhhccccCCHHHHHHHH-HcCCCEEEEccccccccCCCCCCCCC----c----ChHHHHH
Q 009560 199 LHGDYQLANGYGHERAKEVLKRHRNTFITIEDFNFLY-RHGINTVRIPVGWWIAFDPDPPAPFI----G----GSLEALD 269 (532)
Q Consensus 199 ~~~e~~l~~~~G~~~a~~~~~~hw~t~ite~d~~~la-~~G~N~VRIpv~ww~~~~~~~~~~~~----~----~~l~~Ld 269 (532)
+.+-|+.|-+.| .|...++..| ++.+..++ +.||..||+. +.+.+.-. .+. + =.+..||
T Consensus 20 l~~~W~~~~~~g--~a~~~l~~~~-----q~~l~~~~~~~gf~yvR~h---~l~~ddm~--~~~~~~~~~~~~Ynf~~lD 87 (486)
T PF01229_consen 20 LKHFWRFCVGSG--RANLLLRADW-----QEQLRELQEELGFRYVRFH---GLFSDDMM--VYSESDEDGIPPYNFTYLD 87 (486)
T ss_dssp --SGGGSEEEES---GGGGGBHHH-----HHHHHHHHCCS--SEEEES----TTSTTTT---EEEEETTEEEEE--HHHH
T ss_pred ccchhhhhcCCC--chHHHhhHHH-----HHHHHHHHhccCceEEEEE---eeccCchh--hccccccCCCCcCChHHHH
Confidence 556677774444 5666666666 56677776 7899999993 33322110 110 0 1599999
Q ss_pred HHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCC----ChhhHHHHHHHHHHHHHH----hCC-CCcEEEEEec
Q 009560 270 NALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWP----ASDYISQTLDVIDFLASR----YAK-HPALLGIELL 340 (532)
Q Consensus 270 ~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~----~~~~~~~~~~~w~~la~r----y~~-~p~v~g~EL~ 340 (532)
++++...++||+++|.|--.|-.- .++. .....|. .|...+++.++++.+++| |+. ...-+-||++
T Consensus 88 ~i~D~l~~~g~~P~vel~f~p~~~----~~~~-~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiW 162 (486)
T PF01229_consen 88 QILDFLLENGLKPFVELGFMPMAL----ASGY-QTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIW 162 (486)
T ss_dssp HHHHHHHHCT-EEEEEE-SB-GGG----BSS---EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEES
T ss_pred HHHHHHHHcCCEEEEEEEechhhh----cCCC-CccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeC
Confidence 999999999999999998766311 0110 0111111 245566666666666555 542 2233569999
Q ss_pred cCCCCCC----CCcccHHHHHHHHHHHHHhhCCCcEEEEeCC--CCCCCc-hhhhhcc--CCCCcEEEEeeecccCCCcc
Q 009560 341 NEPSAAT----VPLDILVPYYKQGYQIVRKYSPTAYVIVCQR--IGNADP-LELYQAN--IGLHNIVVDLHYYNLFDTFF 411 (532)
Q Consensus 341 NEP~~~~----~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~~--~~~~~~-~~~~~~~--~~~~nvv~s~H~Y~~f~~~~ 411 (532)
|||.... .+.+.+.++|+.++++||+++|+..| -+++ ++.... .+++.+. ...+-..+++|.|+.-....
T Consensus 163 NEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~p~~~v-GGp~~~~~~~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~ 241 (486)
T PF01229_consen 163 NEPDLKDFWWDGTPEEYFELYDATARAIKAVDPELKV-GGPAFAWAYDEWCEDFLEFCKGNNCPLDFISFHSYGTDSAED 241 (486)
T ss_dssp S-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH-TTSEE-EEEEEETT-THHHHHHHHHHHHCT---SEEEEEEE-BESESE
T ss_pred cCCCcccccCCCCHHHHHHHHHHHHHHHHHhCCCCcc-cCccccccHHHHHHHHHHHHhcCCCCCCEEEEEecccccccc
Confidence 9998742 23456889999999999999999764 3332 221111 2333221 23455789999998421100
Q ss_pred ccC---ChhhhHHHHHHHHHHHHHHHHhcC--CCcEEEeccCcccCCCCCCH--HHHHHHHHH-HHHHHHhCCCcEEEEc
Q 009560 412 VNM---STVDNILFIYKSREAQLQALNNAN--GPLVFIGEWVNEWNVTSGTQ--KDYQDFGSA-QLEVYNAASFGWAYWT 483 (532)
Q Consensus 412 ~~~---~~~~~i~~i~~~~~~~~~~~~~~~--g~pv~vGEwG~~~~~~~a~~--~~~~~~~~~-ql~~~~~~~~Gw~yW~ 483 (532)
... ..-...+.+...+......+.+.. ..|+.+.||+.......... .....|+-. .++..+..--+..||+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~tE~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~~l~~~sywt 321 (486)
T PF01229_consen 242 INENMYERIEDSRRLFPELKETRPIINDEADPNLPLYITEWNASISPRNPQHDTCFKAAYIAKNLLSNDGAFLDSFSYWT 321 (486)
T ss_dssp -SS-EEEEB--HHHHHHHHHHHHHHHHTSSSTT--EEEEEEES-SSTT-GGGGSHHHHHHHHH-HHHHGGGT-SEEEES-
T ss_pred cchhHHhhhhhHHHHHHHHHHHHHHHhhccCCCCceeecccccccCCCcchhccccchhhHHHHHHHhhhhhhhhhhccc
Confidence 000 011112233333332223334443 35799999998653211111 122344333 5565553334688998
Q ss_pred ccC
Q 009560 484 LKN 486 (532)
Q Consensus 484 ~k~ 486 (532)
+..
T Consensus 322 ~sD 324 (486)
T PF01229_consen 322 FSD 324 (486)
T ss_dssp SBS
T ss_pred hhh
Confidence 875
No 29
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD). FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.
Probab=98.70 E-value=6.2e-08 Score=92.28 Aligned_cols=81 Identities=25% Similarity=0.359 Sum_probs=52.1
Q ss_pred cceEEEEEecCCeEEEEecCCCceeEEcCCCCCCcceEEEEEecCCeEEEEe-cCCeEEEEeCCCceEEEeecCCCCCce
Q 009560 66 GTQVQIKSVTLEKYVCAESGGGTDVSVTRDVASSWETFTLWRVSESEFQFRT-SQGQFLTCDGEGCVVSATAKSPSTPET 144 (532)
Q Consensus 66 g~~v~~~s~~~~~yv~ae~gg~~~l~anr~~~~~wE~f~~~~~~~~~~~lr~-~~~~~v~~~~~g~~~~a~~~~~~~~e~ 144 (532)
-++|+||| .+|||||++.-| .|+|+++++|++|+|+++. .+++.++-. .|++|++++..+. +.|++.+++..|.
T Consensus 38 ~~~iafKs-~~GkYLs~Dk~G--~v~a~sdAiGp~E~f~~V~-~~~~~a~~~~~~~~FLs~~~~~~-i~a~s~~a~~~e~ 112 (191)
T PF06229_consen 38 DEKIAFKS-GHGKYLSCDKDG--IVSARSDAIGPQEQFEPVF-QDGKPALFSSSNNKFLSVDEEGD-IRADSKTAGENEM 112 (191)
T ss_dssp SS-EEEEE-TTS-BEEE-SSS--BEEE--SS--TTTBEEEE--STT--EEEE-TTS-BEEE-SSS--EEE--S---TTT-
T ss_pred CCceEeec-cCccEEEEcCCC--cEEEEeecCCCceEEEEEE-CCCCeEEEecCCCeEEEEecccC-eeeccccCCCCce
Confidence 37899999 799999999886 8999999999999999655 456666666 9999999998887 9999999999998
Q ss_pred EEEEEcC
Q 009560 145 FEIERNN 151 (532)
Q Consensus 145 F~~v~~~ 151 (532)
+.|--++
T Consensus 113 ~~iR~~~ 119 (191)
T PF06229_consen 113 IKIRSDA 119 (191)
T ss_dssp -EEEE-S
T ss_pred EEEEEec
Confidence 8876664
No 30
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.70 E-value=8.1e-07 Score=104.91 Aligned_cols=184 Identities=16% Similarity=0.216 Sum_probs=117.1
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEc----CCCCCCCCCCCCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDL----HAAPGSQNGMEHSASRD 303 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDl----H~~pGsqn~~~~sg~~~ 303 (532)
++|++.||++|+|+||+.- . |..+ +..+.|-++||+|+-+. |.. ...+
T Consensus 358 ~~dl~lmK~~g~NavR~sH-----y---P~~~----------~fydlcDe~GllV~dE~~~e~~g~-------~~~~--- 409 (1021)
T PRK10340 358 EKDIQLMKQHNINSVRTAH-----Y---PNDP----------RFYELCDIYGLFVMAETDVESHGF-------ANVG--- 409 (1021)
T ss_pred HHHHHHHHHCCCCEEEecC-----C---CCCH----------HHHHHHHHCCCEEEECCcccccCc-------cccc---
Confidence 6899999999999999841 1 1112 66789999999999875 321 1111
Q ss_pred CCCCC--CChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEeCCCCC
Q 009560 304 GTTDW--PASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQRIGN 381 (532)
Q Consensus 304 g~~~W--~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~~~~~ 381 (532)
...| .++...+.+.+-.+.+.+|++++|+|+.|.+.||.... . ..+++++.+|+.||+++|..++..
T Consensus 410 -~~~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~g----~----~~~~~~~~~k~~DptR~v~~~~~~-- 478 (1021)
T PRK10340 410 -DISRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGYG----C----NIRAMYHAAKALDDTRLVHYEEDR-- 478 (1021)
T ss_pred -ccccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcccc----H----HHHHHHHHHHHhCCCceEEeCCCc--
Confidence 0011 13455667777788999999999999999999998532 1 236889999999999998764311
Q ss_pred CCchhhhhccCCCCcEEEEeeecccCCCccccCChhhhHHHHHHHHHHHHHHHHh-cCCCcEEEeccCcccCCCCCCHHH
Q 009560 382 ADPLELYQANIGLHNIVVDLHYYNLFDTFFVNMSTVDNILFIYKSREAQLQALNN-ANGPLVFIGEWVNEWNVTSGTQKD 460 (532)
Q Consensus 382 ~~~~~~~~~~~~~~nvv~s~H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~-~~g~pv~vGEwG~~~~~~~a~~~~ 460 (532)
. ...-.|++. +|.. .+ .+ ....+ ...+|+++.|++-.+.......++
T Consensus 479 -~---------~~~~Dv~~~-~Y~~---------~~----~~--------~~~~~~~~~kP~i~~Ey~hamgn~~g~~~~ 526 (1021)
T PRK10340 479 -D---------AEVVDVIST-MYTR---------VE----LM--------NEFGEYPHPKPRILCEYAHAMGNGPGGLTE 526 (1021)
T ss_pred -C---------ccccceecc-ccCC---------HH----HH--------HHHHhCCCCCcEEEEchHhccCCCCCCHHH
Confidence 0 111234443 2332 11 11 11112 235899999999765433333444
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEcccCC
Q 009560 461 YQDFGSAQLEVYNAASFGWAYWTLKND 487 (532)
Q Consensus 461 ~~~~~~~ql~~~~~~~~Gw~yW~~k~e 487 (532)
|...++. + ..-+|-+.|.|...
T Consensus 527 yw~~~~~----~-p~l~GgfiW~~~D~ 548 (1021)
T PRK10340 527 YQNVFYK----H-DCIQGHYVWEWCDH 548 (1021)
T ss_pred HHHHHHh----C-CceeEEeeeecCcc
Confidence 4443322 2 26679999998873
No 31
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.63 E-value=1.6e-06 Score=102.28 Aligned_cols=115 Identities=16% Similarity=0.243 Sum_probs=83.6
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCC-CCCCCCCCCCCCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAA-PGSQNGMEHSASRDGTT 306 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~-pGsqn~~~~sg~~~g~~ 306 (532)
++||+.||++|+|+||+.- . |..| +..+.|-++||+|+-+.-.. .|.. ..+ .
T Consensus 374 ~~di~lmK~~g~NaVR~sH-----y---P~~p----------~fydlcDe~GilV~dE~~~e~hg~~----~~~-----~ 426 (1027)
T PRK09525 374 VQDILLMKQHNFNAVRCSH-----Y---PNHP----------LWYELCDRYGLYVVDEANIETHGMV----PMN-----R 426 (1027)
T ss_pred HHHHHHHHHCCCCEEEecC-----C---CCCH----------HHHHHHHHcCCEEEEecCccccCCc----ccc-----C
Confidence 5799999999999999941 1 1112 56799999999999885210 0100 000 0
Q ss_pred CCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEeC
Q 009560 307 DWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQ 377 (532)
Q Consensus 307 ~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~ 377 (532)
...+++..+.+.+-++.+.+|.+++|+|+.|.+.||+... ....++++.+|+.||+++|...+
T Consensus 427 ~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~~g--------~~~~~l~~~~k~~DptRpV~y~~ 489 (1027)
T PRK09525 427 LSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESGHG--------ANHDALYRWIKSNDPSRPVQYEG 489 (1027)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCCcC--------hhHHHHHHHHHhhCCCCcEEECC
Confidence 1123566777888899999999999999999999998532 11367889999999999998764
No 32
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.49 E-value=2.3e-06 Score=88.59 Aligned_cols=137 Identities=15% Similarity=0.186 Sum_probs=87.1
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTD 307 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~ 307 (532)
++.+++||++|+|+|-++|.| ..-++.++ .|+=+....|++.++.|+++||+|||-.--.- +.-++.. |.+.
T Consensus 27 ~~~l~k~ka~G~n~v~~yv~W-~~he~~~g-~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi--~aE~~~g----G~P~ 98 (319)
T PF01301_consen 27 RDRLQKMKAAGLNTVSTYVPW-NLHEPEEG-QFDFTGNRDLDRFLDLAQENGLYVILRPGPYI--CAEWDNG----GLPA 98 (319)
T ss_dssp HHHHHHHHHTT-SEEEEE--H-HHHSSBTT-B---SGGG-HHHHHHHHHHTT-EEEEEEES-----TTBGGG----G--G
T ss_pred HHHHHHHHhCCcceEEEeccc-cccCCCCC-cccccchhhHHHHHHHHHHcCcEEEeccccee--cccccch----hhhh
Confidence 799999999999999999997 45566554 66666678899999999999999998743211 1111111 2333
Q ss_pred CC-----------ChhhHHHHHHHHHHHHHHhC-----CCCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCCc
Q 009560 308 WP-----------ASDYISQTLDVIDFLASRYA-----KHPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTA 371 (532)
Q Consensus 308 W~-----------~~~~~~~~~~~w~~la~ry~-----~~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~ 371 (532)
|. ++...+...++++.|.+..+ +-..|+++++=||... ...-.++.+.+.++.|+...+.
T Consensus 99 Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~----~~~~~~Y~~~l~~~~~~~g~~~ 174 (319)
T PF01301_consen 99 WLLRKPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGS----YGTDRAYMEALKDAYRDWGIDP 174 (319)
T ss_dssp GGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGC----TSS-HHHHHHHHHHHHHTT-SS
T ss_pred hhhccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCC----CcccHhHHHHHHHHHHHhhCcc
Confidence 42 35666777777777766533 3346889999999862 3355778888888999988874
Q ss_pred EEEEe
Q 009560 372 YVIVC 376 (532)
Q Consensus 372 ~Viv~ 376 (532)
.+...
T Consensus 175 ~~~~t 179 (319)
T PF01301_consen 175 VLLYT 179 (319)
T ss_dssp SBEEE
T ss_pred ceeec
Confidence 44443
No 33
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=98.49 E-value=3.3e-06 Score=86.30 Aligned_cols=134 Identities=12% Similarity=0.129 Sum_probs=83.0
Q ss_pred HHHHHHHHHcCCCEEEEccccc-ccc-CC--CC--------C-----CCCCcChHHHHHHHHHHHHHcCCEEEEE-cCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWW-IAF-DP--DP--------P-----APFIGGSLEALDNALSWAEAYNIKCIID-LHAA 289 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww-~~~-~~--~~--------~-----~~~~~~~l~~Ld~~v~~a~k~Gi~VILD-lH~~ 289 (532)
+.-++..|+.|||+||+-+.-. ... .+ .+ + ..+++.+++.+|++|+.|.++||.+-|= +|..
T Consensus 33 ~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~ 112 (289)
T PF13204_consen 33 EQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFWGC 112 (289)
T ss_dssp HHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS-HH
T ss_pred HHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEECC
Confidence 5668889999999999977332 111 00 00 0 1135679999999999999999998654 4422
Q ss_pred CCCCCCCCCCCCCCCCCCCCC---hhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHh
Q 009560 290 PGSQNGMEHSASRDGTTDWPA---SDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRK 366 (532)
Q Consensus 290 pGsqn~~~~sg~~~g~~~W~~---~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~ 366 (532)
+.. ...|.. .-..+...++++.|++||+..|+++ |-|.||= .....-.+.++++.+.||+
T Consensus 113 ~~~------------~~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~Nvi-W~l~gd~----~~~~~~~~~w~~~~~~i~~ 175 (289)
T PF13204_consen 113 PYV------------PGTWGFGPNIMPPENAERYGRYVVARYGAYPNVI-WILGGDY----FDTEKTRADWDAMARGIKE 175 (289)
T ss_dssp HHH-------------------TTSS-HHHHHHHHHHHHHHHTT-SSEE-EEEESSS------TTSSHHHHHHHHHHHHH
T ss_pred ccc------------cccccccccCCCHHHHHHHHHHHHHHHhcCCCCE-EEecCcc----CCCCcCHHHHHHHHHHHHh
Confidence 110 011211 2346778899999999999999988 8899997 1234566677899999999
Q ss_pred hCCCcEEEEeCC
Q 009560 367 YSPTAYVIVCQR 378 (532)
Q Consensus 367 ~~~~~~Viv~~~ 378 (532)
.+|.+++.+++.
T Consensus 176 ~dp~~L~T~H~~ 187 (289)
T PF13204_consen 176 NDPYQLITIHPC 187 (289)
T ss_dssp H--SS-EEEEE-
T ss_pred hCCCCcEEEeCC
Confidence 999888888864
No 34
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=98.47 E-value=2.3e-07 Score=77.65 Aligned_cols=78 Identities=23% Similarity=0.356 Sum_probs=49.0
Q ss_pred HHHHhCCCCcEEEEEeccC-CCCC---------CCCcccHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCchhhhhccCC
Q 009560 324 LASRYAKHPALLGIELLNE-PSAA---------TVPLDILVPYYKQGYQIVRKYSPTAYVIVCQRIGNADPLELYQANIG 393 (532)
Q Consensus 324 la~ry~~~p~v~g~EL~NE-P~~~---------~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~~~~~~~~~~~~~~~~~ 393 (532)
+.++|++++.|++|||.|| |... ....+.+.+|++++.+.||+++|+++|.++. ++ .+...+... ..
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g~-~~-~~~~~~~~~-~~ 77 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSGF-WG-GDWEDLEQL-QA 77 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--B----S-TTHHHHS---
T ss_pred CchhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEeec-cc-CCHHHHHHh-ch
Confidence 4678999999999999999 6621 1134678999999999999999999987653 32 222233333 22
Q ss_pred CCcEEEEeeec
Q 009560 394 LHNIVVDLHYY 404 (532)
Q Consensus 394 ~~nvv~s~H~Y 404 (532)
..-.++++|.|
T Consensus 78 ~~~DvisfH~Y 88 (88)
T PF12876_consen 78 ENLDVISFHPY 88 (88)
T ss_dssp TT-SSEEB-EE
T ss_pred hcCCEEeeecC
Confidence 45578999998
No 35
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.29 E-value=2.5e-05 Score=79.23 Aligned_cols=216 Identities=20% Similarity=0.233 Sum_probs=93.5
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTD 307 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~ 307 (532)
+.|+..|+++|+|+||+ | ..+|... =|..++.+.+.||||||||-...++-+.. .....
T Consensus 56 ~rDi~~l~~LgiNtIRV---Y--~vdp~~n----------Hd~CM~~~~~aGIYvi~Dl~~p~~sI~r~------~P~~s 114 (314)
T PF03198_consen 56 KRDIPLLKELGINTIRV---Y--SVDPSKN----------HDECMSAFADAGIYVILDLNTPNGSINRS------DPAPS 114 (314)
T ss_dssp HHHHHHHHHHT-SEEEE---S-----TTS------------HHHHHHHHHTT-EEEEES-BTTBS--TT------S----
T ss_pred HHhHHHHHHcCCCEEEE---E--EeCCCCC----------HHHHHHHHHhCCCEEEEecCCCCccccCC------CCcCC
Confidence 78999999999999998 2 2344321 35778888899999999998754333211 11123
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCCcccHHHHHHHHHH----HHHhhCCCcEEEEeCCCCCCC
Q 009560 308 WPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVPLDILVPYYKQGYQ----IVRKYSPTAYVIVCQRIGNAD 383 (532)
Q Consensus 308 W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~----aIR~~~~~~~Viv~~~~~~~~ 383 (532)
|. ....+++ ..+.+.|+.+++++||-.-||-.... .......+.+++++ -|++.+. +.|-|+ ...+|
T Consensus 115 w~-~~l~~~~----~~vid~fa~Y~N~LgFf~GNEVin~~-~~t~aap~vKAavRD~K~Yi~~~~~-R~IPVG--YsaaD 185 (314)
T PF03198_consen 115 WN-TDLLDRY----FAVIDAFAKYDNTLGFFAGNEVINDA-SNTNAAPYVKAAVRDMKAYIKSKGY-RSIPVG--YSAAD 185 (314)
T ss_dssp ---HHHHHHH----HHHHHHHTT-TTEEEEEEEESSS-ST-T-GGGHHHHHHHHHHHHHHHHHSSS-----EE--EEE--
T ss_pred CC-HHHHHHH----HHHHHHhccCCceEEEEecceeecCC-CCcccHHHHHHHHHHHHHHHHhcCC-CCCcee--EEccC
Confidence 42 2333444 44455677889999999999976532 22234445555444 4455443 444454 11112
Q ss_pred c----h---hhhhcc-CCCCcEEEEeeecccCCCccccCChhhhHHHHHHHHHHHHHHHHhcCCCcEEEeccCcccCCCC
Q 009560 384 P----L---ELYQAN-IGLHNIVVDLHYYNLFDTFFVNMSTVDNILFIYKSREAQLQALNNANGPLVFIGEWVNEWNVTS 455 (532)
Q Consensus 384 ~----~---~~~~~~-~~~~nvv~s~H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~g~pv~vGEwG~~~~~~~ 455 (532)
. . .++... ....-..+.+-.|.. .+.+. +-...+......++. ...|+|.+|||+....+.
T Consensus 186 ~~~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~W-----Cg~St-----f~~SGy~~l~~~f~~-y~vPvffSEyGCn~~~pR 254 (314)
T PF03198_consen 186 DAEIRQDLANYLNCGDDDERIDFFGLNSYEW-----CGDST-----FETSGYDRLTKEFSN-YSVPVFFSEYGCNTVTPR 254 (314)
T ss_dssp -TTTHHHHHHHTTBTT-----S-EEEEE---------SS-------HHHHSHHHHHHHHTT--SS-EEEEEE---SSSS-
T ss_pred ChhHHHHHHHHhcCCCcccccceeeecccee-----cCCCc-----cccccHHHHHHHhhC-CCCCeEEcccCCCCCCCc
Confidence 1 1 122221 112334555555642 11111 111112222333333 357899999999632111
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEcccCCC
Q 009560 456 GTQKDYQDFGSAQLEVYNAASFGWAYWTLKNDR 488 (532)
Q Consensus 456 a~~~~~~~~~~~ql~~~~~~~~Gw~yW~~k~e~ 488 (532)
.=.+.-.-|-..+.++|. |-..-.|-.|.
T Consensus 255 ~f~ev~aly~~~Mt~v~S----GGivYEy~~e~ 283 (314)
T PF03198_consen 255 TFTEVPALYSPEMTDVWS----GGIVYEYFQEA 283 (314)
T ss_dssp --THHHHHTSHHHHTTEE----EEEES-SB--S
T ss_pred cchHhHHhhCccchhhee----ceEEEEEeccC
Confidence 000111223334444454 66666666653
No 36
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=98.29 E-value=3.1e-05 Score=72.63 Aligned_cols=137 Identities=25% Similarity=0.339 Sum_probs=96.7
Q ss_pred HHHHHHHHHcCCCEEEEcc-cccc-ccCCCC--CCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPV-GWWI-AFDPDP--PAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRD 303 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv-~ww~-~~~~~~--~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~ 303 (532)
+++|+.|++.|+++|=|-- ++.. ...|.. +..+....-+.|+.+++.|.++||+|+|.|...|. +...
T Consensus 23 ~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~----~w~~---- 94 (166)
T PF14488_consen 23 REEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPD----YWDQ---- 94 (166)
T ss_pred HHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCch----hhhc----
Confidence 7999999999999995431 1100 001111 11122345678999999999999999999986532 1111
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEeCCC
Q 009560 304 GTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQRI 379 (532)
Q Consensus 304 g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~~~ 379 (532)
+...| ..+.-..+.+.+.++|++++++.||=|-.|+.... ..-.+.++.+.+.++++.++.+|++++.+
T Consensus 95 ~~~~~----~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~---~~~~~~~~~l~~~lk~~s~~~Pv~ISpf~ 163 (166)
T PF14488_consen 95 GDLDW----EAERNKQVADELWQRYGHHPSFYGWYIPYEIDDYN---WNAPERFALLGKYLKQISPGKPVMISPFI 163 (166)
T ss_pred cCHHH----HHHHHHHHHHHHHHHHcCCCCCceEEEecccCCcc---cchHHHHHHHHHHHHHhCCCCCeEEecCc
Confidence 12222 34445568889999999999999999999998642 33467778888999999999999998744
No 37
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.19 E-value=3.5e-05 Score=79.92 Aligned_cols=233 Identities=15% Similarity=0.257 Sum_probs=137.5
Q ss_pred HHHHHHHcCCCEEEEc--cccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEE---EEcCC-CCCCCCCCCCCCCCC
Q 009560 230 DFNFLYRHGINTVRIP--VGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCI---IDLHA-APGSQNGMEHSASRD 303 (532)
Q Consensus 230 d~~~la~~G~N~VRIp--v~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VI---LDlH~-~pGsqn~~~~sg~~~ 303 (532)
....+-..-||.|=.. +- |...++.++ .+ .++..|++++||+++||.|- |=.|. .|. |-..
T Consensus 26 ~~~~~~~~~Fn~~t~eN~~K-w~~~e~~~g-~~---~~~~~D~~~~~a~~~g~~vrGH~LvW~~~~P~----w~~~---- 92 (320)
T PF00331_consen 26 RYRELFAKHFNSVTPENEMK-WGSIEPEPG-RF---NFESADAILDWARENGIKVRGHTLVWHSQTPD----WVFN---- 92 (320)
T ss_dssp HHHHHHHHH-SEEEESSTTS-HHHHESBTT-BE---E-HHHHHHHHHHHHTT-EEEEEEEEESSSS-H----HHHT----
T ss_pred HHHHHHHHhCCeeeeccccc-hhhhcCCCC-cc---CccchhHHHHHHHhcCcceeeeeEEEcccccc----eeee----
Confidence 4555555668888664 33 334444433 33 57899999999999999976 44443 121 1000
Q ss_pred CCCCCCCh---hhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCC-----CcccH-----HHHHHHHHHHHHhhCCC
Q 009560 304 GTTDWPAS---DYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATV-----PLDIL-----VPYYKQGYQIVRKYSPT 370 (532)
Q Consensus 304 g~~~W~~~---~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~-----~~~~l-----~~~~~~~~~aIR~~~~~ 370 (532)
...+... ...++..++++.+++||++...|..||++|||..... ....| .+|+..+++..|+++|+
T Consensus 93 -~~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~ 171 (320)
T PF00331_consen 93 -LANGSPDEKEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGPDYIADAFRAAREADPN 171 (320)
T ss_dssp -STTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSSSSBCTSHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred -ccCCCcccHHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCCccccccCChhhhcccHhHHHHHHHHHHHhCCC
Confidence 0011112 2678888999999999998778999999999987532 01112 25888999999999999
Q ss_pred cEEEEeCCCCCCCc--hhhh-------hccCCCCcEEEEeeecccCCCccccCChhhhHHHHHHHHHHHHHHHHhcCCCc
Q 009560 371 AYVIVCQRIGNADP--LELY-------QANIGLHNIVVDLHYYNLFDTFFVNMSTVDNILFIYKSREAQLQALNNANGPL 441 (532)
Q Consensus 371 ~~Viv~~~~~~~~~--~~~~-------~~~~~~~nvv~s~H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~g~p 441 (532)
..+++.+..--... ..+. ....+-+-+-+..|+-.... ...+. +.+..+.. .|.|
T Consensus 172 a~L~~NDy~~~~~~k~~~~~~lv~~l~~~gvpIdgIG~Q~H~~~~~~-----------~~~i~----~~l~~~~~-~Gl~ 235 (320)
T PF00331_consen 172 AKLFYNDYNIESPAKRDAYLNLVKDLKARGVPIDGIGLQSHFDAGYP-----------PEQIW----NALDRFAS-LGLP 235 (320)
T ss_dssp SEEEEEESSTTSTHHHHHHHHHHHHHHHTTHCS-EEEEEEEEETTSS-----------HHHHH----HHHHHHHT-TTSE
T ss_pred cEEEeccccccchHHHHHHHHHHHHHHhCCCccceechhhccCCCCC-----------HHHHH----HHHHHHHH-cCCc
Confidence 99999753211111 1121 11234577889999865411 22232 23334433 4789
Q ss_pred EEEeccCcccCCCCC---CHHHHHHHHHHHHHHHHhC----CCcEEEEcccCCCCCCch
Q 009560 442 VFIGEWVNEWNVTSG---TQKDYQDFGSAQLEVYNAA----SFGWAYWTLKNDRKHWDF 493 (532)
Q Consensus 442 v~vGEwG~~~~~~~a---~~~~~~~~~~~ql~~~~~~----~~Gw~yW~~k~e~~~Ws~ 493 (532)
|.|+|+-........ ......+++++.+.++-+. .-|.++|.+.. ...|--
T Consensus 236 i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~~~v~git~Wg~~D-~~sW~~ 293 (320)
T PF00331_consen 236 IHITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSHPPAAVEGITWWGFTD-GYSWRP 293 (320)
T ss_dssp EEEEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHTTHCTEEEEEESSSBT-TGSTTG
T ss_pred eEEEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhCCccCCCEEEEECCCC-CCcccC
Confidence 999999876432211 1233445566666666443 46999999887 344543
No 38
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.06 E-value=2.8e-05 Score=86.78 Aligned_cols=141 Identities=19% Similarity=0.229 Sum_probs=94.4
Q ss_pred ccccCCHHHHHHHHHcCCCEEEE-ccccccccCCCCCCCCCcChHHHHHHH-HHHHHHcCCEEEEEcCCCC-CCCCCCCC
Q 009560 222 RNTFITIEDFNFLYRHGINTVRI-PVGWWIAFDPDPPAPFIGGSLEALDNA-LSWAEAYNIKCIIDLHAAP-GSQNGMEH 298 (532)
Q Consensus 222 w~t~ite~d~~~la~~G~N~VRI-pv~ww~~~~~~~~~~~~~~~l~~Ld~~-v~~a~k~Gi~VILDlH~~p-Gsqn~~~~ 298 (532)
|..-+-++|++.||++|+|+||+ .|.| ...+|..+ .|+ +..+|.. ++.|.+.|++|||--- | |....|..
T Consensus 27 ~p~~~w~ddl~~mk~~G~N~V~ig~faW-~~~eP~eG-~fd---f~~~D~~~l~~a~~~Gl~vil~t~--P~g~~P~Wl~ 99 (673)
T COG1874 27 WPRETWMDDLRKMKALGLNTVRIGYFAW-NLHEPEEG-KFD---FTWLDEIFLERAYKAGLYVILRTG--PTGAPPAWLA 99 (673)
T ss_pred CCHHHHHHHHHHHHHhCCCeeEeeeEEe-eccCcccc-ccC---cccchHHHHHHHHhcCceEEEecC--CCCCCchHHh
Confidence 44434489999999999999999 6665 66677665 443 3356666 9999999999999652 2 11111111
Q ss_pred C-----------CCCCCCC-----CCCChhhHHHHHHHHHHHHHH-hCCCCcEEEEEeccCCCC-C---CCCcccHHHHH
Q 009560 299 S-----------ASRDGTT-----DWPASDYISQTLDVIDFLASR-YAKHPALLGIELLNEPSA-A---TVPLDILVPYY 357 (532)
Q Consensus 299 s-----------g~~~g~~-----~W~~~~~~~~~~~~w~~la~r-y~~~p~v~g~EL~NEP~~-~---~~~~~~l~~~~ 357 (532)
. +...... +..++.+++....+.++|++| |++.++|++|.+-||=-+ + ......++.|.
T Consensus 100 ~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~~wL 179 (673)
T COG1874 100 KKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAFRLWL 179 (673)
T ss_pred cCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHHHHHH
Confidence 1 1111111 223566788888899999999 999999999999999433 1 12344566677
Q ss_pred HHHHHHHHhhCC
Q 009560 358 KQGYQIVRKYSP 369 (532)
Q Consensus 358 ~~~~~aIR~~~~ 369 (532)
++-+..+...+.
T Consensus 180 k~~yg~l~~ln~ 191 (673)
T COG1874 180 KKGYGSLDNLNE 191 (673)
T ss_pred HhCcchHHhhhh
Confidence 777765555544
No 39
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=97.93 E-value=0.0012 Score=67.12 Aligned_cols=199 Identities=18% Similarity=0.186 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHHHHcCCEEEEEcCCC-CCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccC
Q 009560 264 SLEALDNALSWAEAYNIKCIIDLHAA-PGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNE 342 (532)
Q Consensus 264 ~l~~Ld~~v~~a~k~Gi~VILDlH~~-pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NE 342 (532)
.++.=|.+++.|++|||.+ --|+. ..+|....-.+ .++..+...+...+.+..+.+||++. +..||++||
T Consensus 80 ~Fe~AD~ia~FAr~h~m~l--hGHtLvW~~q~P~W~~~-----~e~~~~~~~~~~e~hI~tV~~rYkg~--~~sWDVVNE 150 (345)
T COG3693 80 NFEAADAIANFARKHNMPL--HGHTLVWHSQVPDWLFG-----DELSKEALAKMVEEHIKTVVGRYKGS--VASWDVVNE 150 (345)
T ss_pred CccchHHHHHHHHHcCCee--ccceeeecccCCchhhc-----cccChHHHHHHHHHHHHHHHHhccCc--eeEEEeccc
Confidence 4788899999999999873 23332 12222211111 11334577888889999999999985 788999999
Q ss_pred CCCCCCC--c------ccHHHHHHHHHHHHHhhCCCcEEEEeCC-CCCCCc----------hhhhhccCCCCcEEEEeee
Q 009560 343 PSAATVP--L------DILVPYYKQGYQIVRKYSPTAYVIVCQR-IGNADP----------LELYQANIGLHNIVVDLHY 403 (532)
Q Consensus 343 P~~~~~~--~------~~l~~~~~~~~~aIR~~~~~~~Viv~~~-~~~~~~----------~~~~~~~~~~~nvv~s~H~ 403 (532)
|.....+ . -.-.++++.+...-|+.+|++.+++-+. .. .++ .++..-..+-+-+-+..|+
T Consensus 151 ~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~NDY~ie-~~~~kr~~~~nlI~~LkekG~pIDgiG~QsH~ 229 (345)
T COG3693 151 AVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVINDYSIE-GNPAKRNYVLNLIEELKEKGAPIDGIGIQSHF 229 (345)
T ss_pred ccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEeeccccc-CChHHHHHHHHHHHHHHHCCCCccceeeeeee
Confidence 9873211 1 1234578899999999999999888764 22 122 2222222445778899993
Q ss_pred cccCCCccccCChhhhHHHHHHHHHHHHHHHHhcCCCcEEEeccCcccC-CCCCCHHHHHHH----HHHHHHHHH--hCC
Q 009560 404 YNLFDTFFVNMSTVDNILFIYKSREAQLQALNNANGPLVFIGEWVNEWN-VTSGTQKDYQDF----GSAQLEVYN--AAS 476 (532)
Q Consensus 404 Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~g~pv~vGEwG~~~~-~~~a~~~~~~~~----~~~ql~~~~--~~~ 476 (532)
=. .+ .+.+ .. ...+..+.+. |.|++|+|+=..-. ....+...++.- .+.....+. ..-
T Consensus 230 ~~----~~--~~~~----~~----~~a~~~~~k~-Gl~i~VTELD~~~~~P~~~~p~~~~~~~~~~~~~f~~~~~~~~~v 294 (345)
T COG3693 230 SG----DG--PSIE----KM----RAALLKFSKL-GLPIYVTELDMSDYTPDSGAPRLYLQKAASRAKAFLLLLLNPNQV 294 (345)
T ss_pred cC----CC--CCHH----HH----HHHHHHHhhc-CCCceEEEeeeeccCCCCccHHHHHHHHHHHHHHHHHHHhccccc
Confidence 21 11 1111 11 1234444555 89999999976532 222223332221 111211111 124
Q ss_pred CcEEEEcccCC
Q 009560 477 FGWAYWTLKND 487 (532)
Q Consensus 477 ~Gw~yW~~k~e 487 (532)
-+-++|.+...
T Consensus 295 ~~it~WGi~D~ 305 (345)
T COG3693 295 KAITFWGITDR 305 (345)
T ss_pred ceEEEeeeccC
Confidence 58899999874
No 40
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=97.81 E-value=0.0025 Score=66.78 Aligned_cols=210 Identities=15% Similarity=0.173 Sum_probs=98.4
Q ss_pred HHHHHHHHcCCEEEEEcCCC-CC--CCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCC-cEEEEEeccCCCC
Q 009560 270 NALSWAEAYNIKCIIDLHAA-PG--SQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHP-ALLGIELLNEPSA 345 (532)
Q Consensus 270 ~~v~~a~k~Gi~VILDlH~~-pG--sqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p-~v~g~EL~NEP~~ 345 (532)
.+++.|+++|+..++-+-.. |+ ..||...++.. + ..=..++..+.+.+++..++++|++.. .+--++.+|||..
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~-~-~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDD-G-SDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-S-S-S-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCc-c-ccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC
Confidence 36789999999988865544 43 23333322211 1 222346789999999999999996543 5567889999986
Q ss_pred C---------CCCcccHHHHHHHHHHHHHhhCCCcEEEEeCC--C----CC--CCc------hhhhhcc-----CCCCcE
Q 009560 346 A---------TVPLDILVPYYKQGYQIVRKYSPTAYVIVCQR--I----GN--ADP------LELYQAN-----IGLHNI 397 (532)
Q Consensus 346 ~---------~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~~--~----~~--~~~------~~~~~~~-----~~~~nv 397 (532)
. ..+.+...++++.+..++++.+.+..|++++. + .. .++ ..|+... ...++|
T Consensus 186 ~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea~~~~~l~~~~~~~~~r~~~i~~ff~~~s~~yi~~l~~v 265 (384)
T PF14587_consen 186 NWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEAGDWEYLYKTDKNDWGRGNQIEAFFNPDSSTYIGDLPNV 265 (384)
T ss_dssp -GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEESSGGGGS---S-TTS---HHHHHHSTTSTT--TT-TTE
T ss_pred CCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecchhhHHHHhhccCCchhhhhhHHhhcCCCchhhhhccccc
Confidence 3 12456778899999999999999887777631 1 10 010 2222211 123343
Q ss_pred --EEEeeecccCCCccccCChhhhHHHHHHHHHHHHHHHHhcC--CCcEEEeccCcccCCC----CCC--HH---HHHHH
Q 009560 398 --VVDLHYYNLFDTFFVNMSTVDNILFIYKSREAQLQALNNAN--GPLVFIGEWVNEWNVT----SGT--QK---DYQDF 464 (532)
Q Consensus 398 --v~s~H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~--g~pv~vGEwG~~~~~~----~a~--~~---~~~~~ 464 (532)
+++-|.|-. .. +. +.+.+.|...... .++. +..++..||+..-+.. +.. ++ ++.-|
T Consensus 266 ~~~i~~HsYwt--~~----~~----~~l~~~R~~~~~~-~~~~~~~~~~wqtE~~il~~~~~~~~~~g~~~~~~m~~aLy 334 (384)
T PF14587_consen 266 PNIISGHSYWT--DS----PW----DDLRDIRKQLADK-LDKYSPGLKYWQTEYCILGDNYEIIEGGGYDRDLGMDTALY 334 (384)
T ss_dssp EEEEEE--TT---SS----SH----HHHHHHHHHHHHH-HHTTSS--EEEE----S----TTT-SSS-HHHHHHH--HHH
T ss_pred hhheeeccccc--CC----CH----HHHHHHHHHHHHH-HHhhCcCCceeeeeeeeccCCcccccCCCcccchhHHHHHH
Confidence 688999953 21 11 2333333322223 3344 6779999998753211 111 11 22345
Q ss_pred HHHHH--HHHHhCCCcEEEEcccCCCCCCchHh
Q 009560 465 GSAQL--EVYNAASFGWAYWTLKNDRKHWDFEW 495 (532)
Q Consensus 465 ~~~ql--~~~~~~~~Gw~yW~~k~e~~~Ws~~~ 495 (532)
+..++ |+-....-+|.||.--. .|+|+.
T Consensus 335 ~arviH~DL~~anassW~wW~a~~---~~~ykd 364 (384)
T PF14587_consen 335 VARVIHNDLTYANASSWQWWTAIS---PYDYKD 364 (384)
T ss_dssp HHHHHHHHHHTS--SEEEEEESEE---SS--SS
T ss_pred HHHHHHhhhhhcccchhHHHHHhc---cccccC
Confidence 55444 33333567999997654 566654
No 41
>PLN03059 beta-galactosidase; Provisional
Probab=97.62 E-value=0.0011 Score=75.70 Aligned_cols=143 Identities=10% Similarity=0.105 Sum_probs=101.0
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTD 307 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~ 307 (532)
++-++++|++|+|+|=.-|.| ..-+|.++ .|+=+....|.+.++.|++.||+|||=.--+ -+--|+.. |.+.
T Consensus 62 ~d~L~k~Ka~GlNtV~tYV~W-n~HEp~~G-~~dF~G~~DL~~Fl~la~e~GLyvilRpGPY--IcAEw~~G----GlP~ 133 (840)
T PLN03059 62 PDLIQKAKDGGLDVIQTYVFW-NGHEPSPG-NYYFEDRYDLVKFIKVVQAAGLYVHLRIGPY--ICAEWNFG----GFPV 133 (840)
T ss_pred HHHHHHHHHcCCCeEEEEecc-cccCCCCC-eeeccchHHHHHHHHHHHHcCCEEEecCCcc--eeeeecCC----CCch
Confidence 799999999999999999987 45566554 6666678899999999999999999953211 11112221 2333
Q ss_pred CC-----------ChhhHHHHHHHHHHHHHHhC-------CCCcEEEEEeccCCCCCC-CCcccHHHHHHHHHHHHHhhC
Q 009560 308 WP-----------ASDYISQTLDVIDFLASRYA-------KHPALLGIELLNEPSAAT-VPLDILVPYYKQGYQIVRKYS 368 (532)
Q Consensus 308 W~-----------~~~~~~~~~~~w~~la~ry~-------~~p~v~g~EL~NEP~~~~-~~~~~l~~~~~~~~~aIR~~~ 368 (532)
|. ++...++..++++.|..+.+ +-..|++.++=||=..-. .....-++|++.+.++.++.+
T Consensus 134 WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~G 213 (840)
T PLN03059 134 WLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLG 213 (840)
T ss_pred hhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcC
Confidence 42 35677788888888887764 234688899999953210 001233778888888899999
Q ss_pred CCcEEEEeCC
Q 009560 369 PTAYVIVCQR 378 (532)
Q Consensus 369 ~~~~Viv~~~ 378 (532)
.+.+++.+++
T Consensus 214 i~VPl~t~dg 223 (840)
T PLN03059 214 TGVPWVMCKQ 223 (840)
T ss_pred CCcceEECCC
Confidence 9988888764
No 42
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=97.57 E-value=0.0017 Score=58.80 Aligned_cols=104 Identities=26% Similarity=0.402 Sum_probs=68.2
Q ss_pred ccccceEEEEEecCCeEEEEecCCCceeEE--cCCCCC-CcceEEEEEecCCeEEEEecCCeEEEEeCCC-------c-e
Q 009560 63 MLDGTQVQIKSVTLEKYVCAESGGGTDVSV--TRDVAS-SWETFTLWRVSESEFQFRTSQGQFLTCDGEG-------C-V 131 (532)
Q Consensus 63 ~~~g~~v~~~s~~~~~yv~ae~gg~~~l~a--nr~~~~-~wE~f~~~~~~~~~~~lr~~~~~~v~~~~~g-------~-~ 131 (532)
|-||.-|.|+| ..|||++|+-.| ..|.- +|.+.. .|.-= ++.-+.+-+-||++-|+|+++.+.- . .
T Consensus 4 F~d~~~VRLRS-~~~kYL~ADeDg-~~Vs~~~~~~s~na~W~Ve-~v~~~~~~v~L~saYGrYL~as~~~~~lG~~G~~v 80 (142)
T PF04601_consen 4 FPDGKHVRLRS-HHGKYLHADEDG-EGVSQDRRGASLNAAWTVE-RVPGSPNYVRLRSAYGRYLAASDEPALLGHTGRRV 80 (142)
T ss_pred cCCCCEEEEEe-cCCCEEEEcCCC-CeEEECCCCCCCcceEEEE-EecCCCCEEEEeeccCceEeccCCcCCCCCCCCEE
Confidence 45899999999 999999998875 33343 444432 34222 2222345689999999999997422 2 1
Q ss_pred EEEeecCCCCCceEEEEEcCCCcEEEEecCCceEEeccC
Q 009560 132 VSATAKSPSTPETFEIERNNDSRVHIKLKSGTYLQATLG 170 (532)
Q Consensus 132 ~~a~~~~~~~~e~F~~v~~~~~~v~i~a~nG~~l~a~~~ 170 (532)
++.....+...-.++-++. +..|.|+..+|+||-|..+
T Consensus 81 ~Q~~~~~~d~~~~Wepvr~-g~~V~Lr~~~gr~LRANG~ 118 (142)
T PF04601_consen 81 VQTDPDRLDSSVEWEPVRD-GFYVKLRHRSGRYLRANGG 118 (142)
T ss_pred EecCCccCCCCceEEEecC-CCEEEEEecCCceEEcCCC
Confidence 2222223333444556666 6789999999999988753
No 43
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=97.48 E-value=0.011 Score=58.45 Aligned_cols=208 Identities=14% Similarity=0.127 Sum_probs=131.6
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTD 307 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~ 307 (532)
+.|++.|+..+. .||+ | . . -...|+++...+.+.|++|+|-+.-.+-.
T Consensus 66 ~sDLe~l~~~t~-~IR~---Y-~----s--------DCn~le~v~pAa~~~g~kv~lGiw~tdd~--------------- 113 (305)
T COG5309 66 ASDLELLASYTH-SIRT---Y-G----S--------DCNTLENVLPAAEASGFKVFLGIWPTDDI--------------- 113 (305)
T ss_pred HhHHHHhccCCc-eEEE---e-e----c--------cchhhhhhHHHHHhcCceEEEEEeeccch---------------
Confidence 789999999988 8997 1 1 1 12347788899999999999987642100
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCC-CCCcccHHHHHHHHHHHHHhhCCCcEEEEeCCCCC-CCch
Q 009560 308 WPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAA-TVPLDILVPYYKQGYQIVRKYSPTAYVIVCQRIGN-ADPL 385 (532)
Q Consensus 308 W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~-~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~~~~~-~~~~ 385 (532)
....++ ....++ .-|...+.|.++-+-||-... .++.+++-+++.++-.++++.+-+.+|.-.+.|-. .+-.
T Consensus 114 ---~~~~~~--til~ay-~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~gpV~T~dsw~~~~~np 187 (305)
T COG5309 114 ---HDAVEK--TILSAY-LPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDGPVTTVDSWNVVINNP 187 (305)
T ss_pred ---hhhHHH--HHHHHH-hccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCceeecccceeeeCCh
Confidence 011221 111122 224556788889999997653 46788999999999999999998887765554421 1112
Q ss_pred hhhhccCCCCcEEEEeeecccCCCccccCChhhhHHHHHHHHHHHHHHHHhc-CC-CcEEEeccCcccC-----CCCCCH
Q 009560 386 ELYQANIGLHNIVVDLHYYNLFDTFFVNMSTVDNILFIYKSREAQLQALNNA-NG-PLVFIGEWVNEWN-----VTSGTQ 458 (532)
Q Consensus 386 ~~~~~~~~~~nvv~s~H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~-~g-~pv~vGEwG~~~~-----~~~a~~ 458 (532)
++.+ ..+.++.-.|.|.- ..+..+...... ..+++.+... ++ ++++|||-|=..+ ..-+++
T Consensus 188 ~l~~---~SDfia~N~~aYwd------~~~~a~~~~~f~---~~q~e~vqsa~g~~k~~~v~EtGWPS~G~~~G~a~pS~ 255 (305)
T COG5309 188 ELCQ---ASDFIAANAHAYWD------GQTVANAAGTFL---LEQLERVQSACGTKKTVWVTETGWPSDGRTYGSAVPSV 255 (305)
T ss_pred HHhh---hhhhhhcccchhcc------ccchhhhhhHHH---HHHHHHHHHhcCCCccEEEeeccCCCCCCccCCcCCCh
Confidence 3333 34677888888832 223322222111 2233333332 22 7899999984322 234567
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEccc
Q 009560 459 KDYQDFGSAQLEVYNAASFGWAYWTLK 485 (532)
Q Consensus 459 ~~~~~~~~~ql~~~~~~~~Gw~yW~~k 485 (532)
++...|+++.+..+.+.+..-++-.--
T Consensus 256 anq~~~~~~i~~~~~~~G~d~fvfeAF 282 (305)
T COG5309 256 ANQKIAVQEILNALRSCGYDVFVFEAF 282 (305)
T ss_pred hHHHHHHHHHHhhhhccCccEEEeeec
Confidence 788899999998888888877776433
No 44
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.41 E-value=0.0034 Score=62.41 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=75.3
Q ss_pred EEeccCCCCCC---CCcccHHHHHHHHHHHHHhhCCCcEEEEeCCC--CCC---Cc----hhhhhccC-CCCcEEEEeee
Q 009560 337 IELLNEPSAAT---VPLDILVPYYKQGYQIVRKYSPTAYVIVCQRI--GNA---DP----LELYQANI-GLHNIVVDLHY 403 (532)
Q Consensus 337 ~EL~NEP~~~~---~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~~~--~~~---~~----~~~~~~~~-~~~nvv~s~H~ 403 (532)
+..+|||.... .+++...+.+++.++.+|. +... ++++.. .+. +. ..|+.... +..-.++++|.
T Consensus 69 ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~--~~~~-l~sPa~~~~~~~~~~g~~Wl~~F~~~~~~~~~~D~iavH~ 145 (239)
T PF11790_consen 69 LLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS--PGVK-LGSPAVAFTNGGTPGGLDWLSQFLSACARGCRVDFIAVHW 145 (239)
T ss_pred eeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc--CCcE-EECCeecccCCCCCCccHHHHHHHHhcccCCCccEEEEec
Confidence 44899999853 5667777778888888884 4443 334432 211 11 23333333 55778999999
Q ss_pred cccCCCccccCChhhhHHHHHHHHHHHHHHHHhcCCCcEEEeccCcccCCCCCCHHHHHHHHHHHHHHHHh
Q 009560 404 YNLFDTFFVNMSTVDNILFIYKSREAQLQALNNANGPLVFIGEWVNEWNVTSGTQKDYQDFGSAQLEVYNA 474 (532)
Q Consensus 404 Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~g~pv~vGEwG~~~~~~~a~~~~~~~~~~~ql~~~~~ 474 (532)
|.. +.+. +.+.+..+.+..++||+|+|||........+.++...|++..+..+++
T Consensus 146 Y~~--------~~~~--------~~~~i~~~~~~~~kPIWITEf~~~~~~~~~~~~~~~~fl~~~~~~ld~ 200 (239)
T PF11790_consen 146 YGG--------DADD--------FKDYIDDLHNRYGKPIWITEFGCWNGGSQGSDEQQASFLRQALPWLDS 200 (239)
T ss_pred CCc--------CHHH--------HHHHHHHHHHHhCCCEEEEeecccCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 922 1111 112233344455689999999976434556778889999999988875
No 45
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=97.35 E-value=0.0016 Score=74.97 Aligned_cols=110 Identities=15% Similarity=0.205 Sum_probs=81.6
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTD 307 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~ 307 (532)
++|++.||++|+|+||.. ++ |+. ++..++|-++||.||-+.-.. .|..
T Consensus 324 ~~dl~lmk~~n~N~vRts-Hy----------P~~-------~~~ydLcDelGllV~~Ea~~~-------~~~~------- 371 (808)
T COG3250 324 ERDLKLMKEANMNSVRTS-HY----------PNS-------EEFYDLCDELGLLVIDEAMIE-------THGM------- 371 (808)
T ss_pred HHHHHHHHHcCCCEEEec-CC----------CCC-------HHHHHHHHHhCcEEEEecchh-------hcCC-------
Confidence 789999999999999985 22 222 166789999999999986542 1111
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEeC
Q 009560 308 WPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQ 377 (532)
Q Consensus 308 W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~ 377 (532)
..+++..+....=++.+.+|-|++|+|+.|-+.||+..+. . ...++..+.+.++++++-.++
T Consensus 372 ~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~~g~-~-------~~~~~~~~k~~d~~r~~~~~~ 433 (808)
T COG3250 372 PDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESGHGS-N-------HWALYRWFKASDPTRPVQYEG 433 (808)
T ss_pred CCCcchhHHHHHHHHHHHHhccCCCcEEEEeccccccCcc-c-------cHHHHHHHhhcCCccceeccC
Confidence 1235667778888899999999999999999999997531 1 135566677788887776654
No 46
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=97.13 E-value=0.016 Score=63.67 Aligned_cols=231 Identities=17% Similarity=0.157 Sum_probs=118.6
Q ss_pred HHcCCCEEEEccccccccCC------CCCC-CCCcChHHH-----HHHHHHHHHH--cCCEEEEEcCCCCCCC--CCC-C
Q 009560 235 YRHGINTVRIPVGWWIAFDP------DPPA-PFIGGSLEA-----LDNALSWAEA--YNIKCIIDLHAAPGSQ--NGM-E 297 (532)
Q Consensus 235 a~~G~N~VRIpv~ww~~~~~------~~~~-~~~~~~l~~-----Ld~~v~~a~k--~Gi~VILDlH~~pGsq--n~~-~ 297 (532)
.-+|++.+|+||+--.+... .+.. .+..-.++. +-.+|+.|++ -+|+++-..-.+|+.. |+- .
T Consensus 110 ~G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~~~ip~ik~a~~~~~~lki~aSpWSpP~WMKtn~~~~ 189 (496)
T PF02055_consen 110 DGIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKKYKIPLIKEALAINPNLKIFASPWSPPAWMKTNGSMN 189 (496)
T ss_dssp TTT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHTTHHHHHHHHHHHHTT-EEEEEES---GGGBTTSSSC
T ss_pred CCceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchhhHHHHHHHHHHhCCCcEEEEecCCCCHHHccCCcCc
Confidence 34799999999975433211 1110 010001211 1124444443 3599999999999742 221 1
Q ss_pred CCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCC-cEEEEEeccCCCCC----------CCCcccHHHHHHH-HHHHHH
Q 009560 298 HSASRDGTTDWPASDYISQTLDVIDFLASRYAKHP-ALLGIELLNEPSAA----------TVPLDILVPYYKQ-GYQIVR 365 (532)
Q Consensus 298 ~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p-~v~g~EL~NEP~~~----------~~~~~~l~~~~~~-~~~aIR 365 (532)
..|...+.. .++..+.+.+++....+.|+... .|.++-+-|||... ..+++..+.|++. +..++|
T Consensus 190 g~g~l~g~~---~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~ 266 (496)
T PF02055_consen 190 GGGSLKGSL---GDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALR 266 (496)
T ss_dssp SS-BBSCGT---TSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHH
T ss_pred CCCccCCCC---CchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Confidence 112111111 24677888888888888998764 78899999999852 1345677888886 777999
Q ss_pred hhCC--CcEEEEeC-CCCC-CCc-hhhhhcc-CCCCcEEEEeeecccCCCccccCChhhhHHHHHHHHHHHHHHHHhcCC
Q 009560 366 KYSP--TAYVIVCQ-RIGN-ADP-LELYQAN-IGLHNIVVDLHYYNLFDTFFVNMSTVDNILFIYKSREAQLQALNNANG 439 (532)
Q Consensus 366 ~~~~--~~~Viv~~-~~~~-~~~-~~~~~~~-~~~~nvv~s~H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~g 439 (532)
+.++ +..|++.+ .+.. .++ ...+.-+ ...--..+.+|.|.. +. ....++.+. .+...
T Consensus 267 ~~~~g~d~kI~~~D~n~~~~~~~~~~il~d~~A~~yv~GiA~HwY~g-~~------~~~~l~~~h----------~~~P~ 329 (496)
T PF02055_consen 267 KAGLGKDVKILIYDHNRDNLPDYADTILNDPEAAKYVDGIAFHWYGG-DP------SPQALDQVH----------NKFPD 329 (496)
T ss_dssp TSTT-TTSEEEEEEEEGGGTTHHHHHHHTSHHHHTTEEEEEEEETTC-S-------HCHHHHHHH----------HHSTT
T ss_pred hcCCCCceEEEEEecCCcccchhhhhhhcChhhHhheeEEEEECCCC-Cc------hhhHHHHHH----------HHCCC
Confidence 9877 55555532 2211 111 1222211 112346799999964 10 111111111 12335
Q ss_pred CcEEEeccCcccCCCC-----CCHHHHHHHHHHHHHHHHhCCCcEEEEccc
Q 009560 440 PLVFIGEWVNEWNVTS-----GTQKDYQDFGSAQLEVYNAASFGWAYWTLK 485 (532)
Q Consensus 440 ~pv~vGEwG~~~~~~~-----a~~~~~~~~~~~ql~~~~~~~~Gw~yW~~k 485 (532)
+.++.+|-+......+ .+-+.-.+|....+..+.....||.+|.+-
T Consensus 330 k~l~~TE~~~g~~~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~gw~~WNl~ 380 (496)
T PF02055_consen 330 KFLLFTEACCGSWNWDTSVDLGSWDRAERYAHDIIGDLNNWVSGWIDWNLA 380 (496)
T ss_dssp SEEEEEEEESS-STTS-SS-TTHHHHHHHHHHHHHHHHHTTEEEEEEEESE
T ss_pred cEEEeeccccCCCCcccccccccHHHHHHHHHHHHHHHHhhceeeeeeeee
Confidence 6689999765321111 112233567777777777677799999764
No 47
>KOG3962 consensus Predicted actin-bundling protein [Cytoskeleton]
Probab=97.12 E-value=0.0025 Score=61.12 Aligned_cols=119 Identities=21% Similarity=0.370 Sum_probs=91.3
Q ss_pred eeeEecCCceeeecccCccccccccCCcccccceEEEEEecCCeEEEEecCCCceeEEcCC---CCCCcceEEEEEecCC
Q 009560 35 VRGVNLGGWLVIEGWIKPSLFDGILNGDMLDGTQVQIKSVTLEKYVCAESGGGTDVSVTRD---VASSWETFTLWRVSES 111 (532)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~s~~~~~yv~ae~gg~~~l~anr~---~~~~wE~f~~~~~~~~ 111 (532)
=.+||-|+|--+-- +++ +-| .|.++- ..|.|+.|+-.|...|-+--+ ....=|+|.+.-++++
T Consensus 29 ~~~~~~g~w~~~~~-----~~~-------~~g-~v~ie~-~~~~yl~a~dng~ft~g~ph~~~~gp~p~e~f~avki~ds 94 (246)
T KOG3962|consen 29 EDAVNDGGWWDANE-----LND-------IEG-TVAIEI-DDGTYLGAMDNGLFTLGAPHDEVDGPEPEEQFMAVKISDS 94 (246)
T ss_pred hhhhcCCcceeccc-----cce-------eeE-EEEEEe-cCceEEEEEecCceeeccCCccccCCCchhhEEEEEccCc
Confidence 36889999865321 111 233 556653 447788777666666666322 3346699999999999
Q ss_pred eEEEEecCCeEEEEeCCCceEEEeecCCCCCceEEEEEcCCCcEEEEecCCceEEecc
Q 009560 112 EFQFRTSQGQFLTCDGEGCVVSATAKSPSTPETFEIERNNDSRVHIKLKSGTYLQATL 169 (532)
Q Consensus 112 ~~~lr~~~~~~v~~~~~g~~~~a~~~~~~~~e~F~~v~~~~~~v~i~a~nG~~l~a~~ 169 (532)
+++|++.=|+|++++..|- |++...++|.-|+|..|.. .+++.+-++||.+.-.+.
T Consensus 95 rIaLKsGyGKYlsinsdgl-vvg~qeAvG~~EQw~~vFq-~~r~a~~as~s~~~~~~e 150 (246)
T KOG3962|consen 95 RIALKSGYGKYLSINSDGL-VVGRQEAVGSREQWEPVFQ-EGRMALLASNSCFIRCNE 150 (246)
T ss_pred eEEecccccceeeecCCcc-EEEehhhcCcHhhchhhhh-ccceEEeeccceeEEech
Confidence 9999999999999999995 9999999999999999988 789999999999886643
No 48
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=96.90 E-value=0.055 Score=55.75 Aligned_cols=222 Identities=11% Similarity=0.067 Sum_probs=116.6
Q ss_pred HcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCC-CCCCCCCCCCCCCCCChhhH
Q 009560 236 RHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQN-GMEHSASRDGTTDWPASDYI 314 (532)
Q Consensus 236 ~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn-~~~~sg~~~g~~~W~~~~~~ 314 (532)
++||..+|+||.--.+.....+.+ ..+.|..+ +-+.++|++|+-.....|-+.- ..+..|. ...=...+..
T Consensus 77 ~lg~si~Rv~I~~ndfsl~g~~d~----w~kels~A-k~~in~g~ivfASPWspPa~Mktt~~~ngg---~~g~Lk~e~Y 148 (433)
T COG5520 77 QLGFSILRVPIDSNDFSLGGSADN----WYKELSTA-KSAINPGMIVFASPWSPPASMKTTNNRNGG---NAGRLKYEKY 148 (433)
T ss_pred ccCceEEEEEecccccccCCCcch----hhhhcccc-hhhcCCCcEEEecCCCCchhhhhccCcCCc---cccccchhHh
Confidence 478999999996433222222222 12222222 2377899999999888875421 1111121 1111234556
Q ss_pred HHHHHHHHHHHHHhCCCC-cEEEEEeccCCCCCC-CCc--ccHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCchhhhhc
Q 009560 315 SQTLDVIDFLASRYAKHP-ALLGIELLNEPSAAT-VPL--DILVPYYKQGYQIVRKYSPTAYVIVCQRIGNADPLELYQA 390 (532)
Q Consensus 315 ~~~~~~w~~la~ry~~~p-~v~g~EL~NEP~~~~-~~~--~~l~~~~~~~~~aIR~~~~~~~Viv~~~~~~~~~~~~~~~ 390 (532)
..+.+++......++++. ++.++.+-|||...+ .+. -...+...=+.+-.+.+..+.-|++.+.++. ...+.++
T Consensus 149 a~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~p~~d~~~wtpQe~~rF~~qyl~si~~~~rV~~pes~~~--~~~~~dp 226 (433)
T COG5520 149 ADYADYLNDFVLEMKNNGVNLYALSVQNEPDYAPTYDWCWWTPQEELRFMRQYLASINAEMRVIIPESFKD--LPNMSDP 226 (433)
T ss_pred HHHHHHHHHHHHHHHhCCCceeEEeeccCCcccCCCCcccccHHHHHHHHHHhhhhhccccEEecchhccc--ccccccc
Confidence 667777777777888774 788999999998742 111 1122222333444455555666776544321 1122111
Q ss_pred ----cC-CCCcEEEEeeecccCCCccccCChhhhHHHHHHHHHHHHHHHHhc--CCCcEEEeccCcc-cCCCCCCHHHHH
Q 009560 391 ----NI-GLHNIVVDLHYYNLFDTFFVNMSTVDNILFIYKSREAQLQALNNA--NGPLVFIGEWVNE-WNVTSGTQKDYQ 462 (532)
Q Consensus 391 ----~~-~~~nvv~s~H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~--~g~pv~vGEwG~~-~~~~~a~~~~~~ 462 (532)
|. -..-.++..|.|..=.. ++. ..+.+. .++.++++|-... ++..+++++...
T Consensus 227 ~lnDp~a~a~~~ilg~H~Ygg~v~-----------~~p--------~~lak~~~~gKdlwmte~y~~esd~~s~dr~~~~ 287 (433)
T COG5520 227 ILNDPKALANMDILGTHLYGGQVS-----------DQP--------YPLAKQKPAGKDLWMTECYPPESDPNSADREALH 287 (433)
T ss_pred cccCHhHhcccceeEeeecccccc-----------cch--------hhHhhCCCcCCceEEeecccCCCCCCcchHHHHH
Confidence 11 12235899999975111 111 111222 2677999997554 333244444444
Q ss_pred HHHHHHHHHHHhCCCcEEEEcccC
Q 009560 463 DFGSAQLEVYNAASFGWAYWTLKN 486 (532)
Q Consensus 463 ~~~~~ql~~~~~~~~Gw~yW~~k~ 486 (532)
.+........+...-|..+|.+.-
T Consensus 288 ~~~hi~~gm~~gg~~ayv~W~i~~ 311 (433)
T COG5520 288 VALHIHIGMTEGGFQAYVWWNIRL 311 (433)
T ss_pred HHHHHHhhccccCccEEEEEEEee
Confidence 444444344454556888887664
No 49
>PF07468 Agglutinin: Agglutinin; InterPro: IPR008998 Agglutinins are sugar-specific lectins that can agglutinate erythrocytes and other cell types. Lectins occur widely in plants, as well as some microorganisms and animal []. Agglutinin from Amaranthus caudatus (amaranthin) is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it can agglutinate A, B and O red blood cells, and has a carbohydrate-binding site that is specific for the methyl-glycoside of the T-antigen found linked to serine or threonine residues of cell surface glycoproteins []. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains []. Lectin B chains from ricin and related toxins also contain beta-trefoil domain, however they are not related to agglutinin, showing little sequence similarity [].; PDB: 1JLY_B 1JLX_B.
Probab=96.74 E-value=0.023 Score=51.85 Aligned_cols=110 Identities=12% Similarity=0.131 Sum_probs=75.5
Q ss_pred EEEecCCeEEEEecCCCc--e-eEEcCCCC-CCcceEEEEE--ecCCeEEEEe-cCCeEEEEeCCCc-eEEEeecCCCC-
Q 009560 71 IKSVTLEKYVCAESGGGT--D-VSVTRDVA-SSWETFTLWR--VSESEFQFRT-SQGQFLTCDGEGC-VVSATAKSPST- 141 (532)
Q Consensus 71 ~~s~~~~~yv~ae~gg~~--~-l~anr~~~-~~wE~f~~~~--~~~~~~~lr~-~~~~~v~~~~~g~-~~~a~~~~~~~- 141 (532)
+++-.||||+++...+.. . |-.+.+.+ .++-.|++.- ..+|.+.+|+ .+||||.....+. =+.|.++.|..
T Consensus 9 ~fkg~N~kYLry~~e~~~~~~~LqF~~edi~dP~v~fev~~~~~~dG~V~Ir~~y~nKfWrr~s~n~~WI~ada~~p~ed 88 (153)
T PF07468_consen 9 AFKGDNGKYLRYRTEDIQQYGYLQFSGEDIGDPYVKFEVEPSKTHDGLVHIRCCYNNKFWRRSSPNDYWIWADADDPDED 88 (153)
T ss_dssp EEETTTS-EEEEEESSCTTCCEEEEEESSTT-CCG-EEEEE-SSTTT-EEEEETTTTEEEEESCCC--BEEEEESSHHH-
T ss_pred EEEcCCCcEEEEEecccccceeEEecCCcCCCCceeEEEEEcccCCCeEEEEeccCCceeEeCCCCCcEEEecCCCcccc
Confidence 455699999999883222 2 66666666 5889999666 6689999999 8999999755552 48888776653
Q ss_pred ----Cce-EEEEEcC---CCcEEEEe-cCCceEEecc-----CceEEeCCCCC
Q 009560 142 ----PET-FEIERNN---DSRVHIKL-KSGTYLQATL-----GNQLTSDYPGM 180 (532)
Q Consensus 142 ----~e~-F~~v~~~---~~~v~i~a-~nG~~l~a~~-----~~~v~ad~~~~ 180 (532)
.+| |+.|+-+ ...|+++- -||.|.+--+ .++|.|.++..
T Consensus 89 ~s~~~cTLF~Pv~vd~~~~~~i~l~~~~n~~~~~r~t~~~~~~sCL~A~~~~i 141 (153)
T PF07468_consen 89 QSKPSCTLFEPVKVDVKDFNVIALRNMQNGHFCKRLTYGGKFVSCLNAASSSI 141 (153)
T ss_dssp TCSTCGG-EEEEESCCCETTEEEEEETTTTEEEEEE--STTBSSEEEEEESS-
T ss_pred cCCCCceEEEEEEecCCCccEEEEEecCCceEEEEEccCCcceeeEeeccCcc
Confidence 777 9998754 46788877 8899887432 35577776543
No 50
>PRK12568 glycogen branching enzyme; Provisional
Probab=96.53 E-value=1.3 Score=50.94 Aligned_cols=145 Identities=19% Similarity=0.292 Sum_probs=82.8
Q ss_pred HHHHHHHHHcCCCEEEE-ccc------cccccCCCC---CCCCCcChHHHHHHHHHHHHHcCCEEEEEc---CCCCCCC-
Q 009560 228 IEDFNFLYRHGINTVRI-PVG------WWIAFDPDP---PAPFIGGSLEALDNALSWAEAYNIKCIIDL---HAAPGSQ- 293 (532)
Q Consensus 228 e~d~~~la~~G~N~VRI-pv~------ww~~~~~~~---~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDl---H~~pGsq- 293 (532)
++-+..|+++|+|+|=| ||. .|- .++.. +.+ .-+..+.|+++|+.|.++||+||||+ |..+...
T Consensus 273 ~~ll~ylk~LGvt~I~LmPi~e~~~~~~wG-Y~~~~~~a~~~-~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~~ 350 (730)
T PRK12568 273 EQLIPYVQQLGFTHIELLPITEHPFGGSWG-YQPLGLYAPTA-RHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDDAHG 350 (730)
T ss_pred HHHHHHHHHcCCCEEEECccccCCCCCCCC-CCCCcCCccCc-ccCCHHHHHHHHHHHHHCCCEEEEEeccccCCccccc
Confidence 56689999999999987 552 121 11111 011 11468899999999999999999995 3222100
Q ss_pred -CC------CCCCCCCCC-CCCC-------CChhhHHHHHHHHHHHHHHhCCCCcEEEEEec----------cC----CC
Q 009560 294 -NG------MEHSASRDG-TTDW-------PASDYISQTLDVIDFLASRYAKHPALLGIELL----------NE----PS 344 (532)
Q Consensus 294 -n~------~~~sg~~~g-~~~W-------~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~----------NE----P~ 344 (532)
.. +.+...+.+ ...| .+++.++..++......++|.=+ .+- ++.+ ++ |.
T Consensus 351 l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhID-G~R-~DAva~mly~d~~r~~g~w~pn 428 (730)
T PRK12568 351 LAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLD-GLR-VDAVASMLYRDYGRAEGEWVPN 428 (730)
T ss_pred cccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhCce-EEE-EcCHhHhhhhcccccccccccc
Confidence 00 111111111 1234 34677777777777777776421 111 2210 11 11
Q ss_pred CCCC-CcccHHHHHHHHHHHHHhhCCCcEEEEe
Q 009560 345 AATV-PLDILVPYYKQGYQIVRKYSPTAYVIVC 376 (532)
Q Consensus 345 ~~~~-~~~~l~~~~~~~~~aIR~~~~~~~Viv~ 376 (532)
..+. ....-.++.+++-++|++..|+.++|-+
T Consensus 429 ~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAE 461 (730)
T PRK12568 429 AHGGRENLEAVAFLRQLNREIASQFPGVLTIAE 461 (730)
T ss_pred ccCCccChHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 1110 1113457899999999999999887765
No 51
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=96.26 E-value=0.01 Score=61.16 Aligned_cols=169 Identities=20% Similarity=0.155 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHH-HHH---hC-CC-CcEEEE
Q 009560 264 SLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFL-ASR---YA-KH-PALLGI 337 (532)
Q Consensus 264 ~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~l-a~r---y~-~~-p~v~g~ 337 (532)
.+++.|++.+-|++-|+++|..|-+..|.. ........--|..- |+. |. ++ -.|.+|
T Consensus 107 t~~rwd~l~~F~~~tG~~liFgLNAL~g~~-----------------~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~W 169 (319)
T PF03662_consen 107 TMSRWDELNNFAQKTGLKLIFGLNALLGRR-----------------QLADRDWDGSWNSSNAQSLLKYTASKGYNIDSW 169 (319)
T ss_dssp -----HHHHHHHHHHT-EEEEEE-TTTS-H-----------------HHHHHHHHHHHHHH-TTTEEEEEESS-GGG---
T ss_pred chhHHHHHHHHHHHhCCEEEEEecccCCCC-----------------CCCCCCcCCCCChHHHHHHHHHHHHcCCCcccc
Confidence 467889999999999999999998865411 00111222334322 111 21 11 246689
Q ss_pred EeccCCCCCC----CCcccHHHHHHHHHHHHHhh---CCCcEEEEeCC-CCCCCc-hhhhhccCCC-CcEEEEeeecccC
Q 009560 338 ELLNEPSAAT----VPLDILVPYYKQGYQIVRKY---SPTAYVIVCQR-IGNADP-LELYQANIGL-HNIVVDLHYYNLF 407 (532)
Q Consensus 338 EL~NEP~~~~----~~~~~l~~~~~~~~~aIR~~---~~~~~Viv~~~-~~~~~~-~~~~~~~~~~-~nvv~s~H~Y~~f 407 (532)
||-|||.... ++..++.+=+.+..++|+++ ....+.|++++ ....++ .+++.. .+. .=.+++.|+|+.
T Consensus 170 ELGNEl~g~g~~~~v~a~qyakD~~~Lr~il~~iy~~~~~~P~v~gP~~~~d~~w~~~FL~~-~g~~~vD~vT~H~Y~l- 247 (319)
T PF03662_consen 170 ELGNELNGSGVGASVSAEQYAKDFIQLRKILNEIYKNALPGPLVVGPGGFFDADWLKEFLKA-SGPGVVDAVTWHHYNL- 247 (319)
T ss_dssp -----HHHHSSSTT--HHHHHHHH---HHHHHHHHHH-TT---EEEEEESS-GGGHHHHHHH-TTTT--SEEEEEEEEE-
T ss_pred ccccccCCCCCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCCeEECCCCCCCHHHHHHHHHh-cCCCccCEEEEEecCC-
Confidence 9999998742 33333333333333333332 23356566543 222221 344443 222 256899999974
Q ss_pred CCcccc------CChhhhHHHHHHHHHHHHHHHHhc--CCCcEEEeccCcccCC
Q 009560 408 DTFFVN------MSTVDNILFIYKSREAQLQALNNA--NGPLVFIGEWVNEWNV 453 (532)
Q Consensus 408 ~~~~~~------~~~~~~i~~i~~~~~~~~~~~~~~--~g~pv~vGEwG~~~~~ 453 (532)
...-+. +++. ..+.+...+. .++.+.++ .+.|++|||-|.+++.
T Consensus 248 g~g~d~~l~~~~l~p~-~Ld~~~~~~~-~~~~~v~~~~p~~~~WlGEtg~Ay~g 299 (319)
T PF03662_consen 248 GSGRDPALIEDFLNPS-YLDTLADTFQ-KLQQVVQEYGPGKPVWLGETGSAYNG 299 (319)
T ss_dssp --TT-TT-HHHHTS---HHHHHHHHHH-HHH-----HHH---EEEEEEEEESTT
T ss_pred CCCchHHHHHHhcChh-hhhHHHHHHH-HHhhhhcccCCCCCeEEeCcccccCC
Confidence 221111 1111 1233332222 22222222 3568999999999863
No 52
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.25 E-value=0.15 Score=57.59 Aligned_cols=148 Identities=15% Similarity=0.163 Sum_probs=85.7
Q ss_pred HHHHHHHHHcCCCEEEE-cccccc-----ccCCCCCCCCCc--ChHHHHHHHHHHHHHcCCEEEEEc---CCCCCCC--C
Q 009560 228 IEDFNFLYRHGINTVRI-PVGWWI-----AFDPDPPAPFIG--GSLEALDNALSWAEAYNIKCIIDL---HAAPGSQ--N 294 (532)
Q Consensus 228 e~d~~~la~~G~N~VRI-pv~ww~-----~~~~~~~~~~~~--~~l~~Ld~~v~~a~k~Gi~VILDl---H~~pGsq--n 294 (532)
++-++.|+++|+|+|=| ||.... ..++......++ +..+.|+++|+.|.++||+||||+ |..+.+. .
T Consensus 160 ~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~ 239 (613)
T TIGR01515 160 DQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDHGLA 239 (613)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccchhh
Confidence 44459999999999999 774311 011111000011 357899999999999999999995 4433210 0
Q ss_pred C------CCCCCCCC-CCCCCC-------ChhhHHHHHHHHHHHHHHhCCCCcEEEEEec---------cCCC-----C-
Q 009560 295 G------MEHSASRD-GTTDWP-------ASDYISQTLDVIDFLASRYAKHPALLGIELL---------NEPS-----A- 345 (532)
Q Consensus 295 ~------~~~sg~~~-g~~~W~-------~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~---------NEP~-----~- 345 (532)
. +.+..... ....|. +++.++..++..+...++|.=+ .+- ++.+ .+|. .
T Consensus 240 ~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iD-G~R-~D~v~~~~~~~~~~~~~~~~~~~~ 317 (613)
T TIGR01515 240 EFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHID-GLR-VDAVASMLYLDYSRDEGEWSPNED 317 (613)
T ss_pred ccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCc-EEE-EcCHHHhhhhcccccccccccccc
Confidence 0 10100000 112233 4677888888888888887522 111 3322 1221 0
Q ss_pred CCCCcccHHHHHHHHHHHHHhhCCCcEEEEeC
Q 009560 346 ATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQ 377 (532)
Q Consensus 346 ~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~ 377 (532)
.+.....-..+.+.+.+.||+..|+.++|-+.
T Consensus 318 ~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~ 349 (613)
T TIGR01515 318 GGRENLEAVDFLRKLNQTVYEAFPGVVTIAEE 349 (613)
T ss_pred CCcCChHHHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 00012234678999999999999998877663
No 53
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=96.15 E-value=2.6 Score=48.63 Aligned_cols=147 Identities=16% Similarity=0.216 Sum_probs=83.2
Q ss_pred HHHHHHHHHcCCCEEEE-cccc------ccccCCCC---CCCCCcChHHHHHHHHHHHHHcCCEEEEEcC---CCCCCC-
Q 009560 228 IEDFNFLYRHGINTVRI-PVGW------WIAFDPDP---PAPFIGGSLEALDNALSWAEAYNIKCIIDLH---AAPGSQ- 293 (532)
Q Consensus 228 e~d~~~la~~G~N~VRI-pv~w------w~~~~~~~---~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH---~~pGsq- 293 (532)
++-+..|+++|+|+|=| ||.- |- .++.. +.+ .-+..+.|+++|+.|.++||+||||+- ......
T Consensus 254 ~~~L~ylk~LG~t~I~LmPi~e~~~~~~wG-Y~~~~~fa~~~-~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~ 331 (758)
T PLN02447 254 DDVLPRIKALGYNAVQLMAIQEHAYYGSFG-YHVTNFFAVSS-RSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLD 331 (758)
T ss_pred HHHHHHHHHcCCCEEEECCccccCCCCCCC-cCcccCccccc-ccCCHHHHHHHHHHHHHCCCEEEEEeccccccccccc
Confidence 56799999999999987 4410 11 11110 011 113578899999999999999999953 221110
Q ss_pred --C-------CCCCCCCCCCCCCCC-------ChhhHHHHHHHHHHHHHHhCCC-------CcEE------EEEe---cc
Q 009560 294 --N-------GMEHSASRDGTTDWP-------ASDYISQTLDVIDFLASRYAKH-------PALL------GIEL---LN 341 (532)
Q Consensus 294 --n-------~~~~sg~~~g~~~W~-------~~~~~~~~~~~w~~la~ry~~~-------p~v~------g~EL---~N 341 (532)
+ .+.+.+...-...|. +++.++..++..+...++|+=+ .+++ +.+. .|
T Consensus 332 gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~ 411 (758)
T PLN02447 332 GLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYN 411 (758)
T ss_pred cccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccchhhhhccccCcccccccCcc
Confidence 1 111211111112343 3466667777777777766421 1121 0011 13
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEeC
Q 009560 342 EPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQ 377 (532)
Q Consensus 342 EP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~ 377 (532)
|-.+...+. .-..|++.+-..|++..|+.++|-++
T Consensus 412 ~~~g~~~d~-~a~~fL~~~N~~i~~~~p~~~~IAEd 446 (758)
T PLN02447 412 EYFGMATDV-DAVVYLMLANDLLHGLYPEAVTIAED 446 (758)
T ss_pred cccCCccCh-HHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 322222233 34668899999999999998877763
No 54
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins PUBMED:2271665. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains PUBMED:9334739.
Probab=96.11 E-value=0.086 Score=47.10 Aligned_cols=99 Identities=14% Similarity=0.154 Sum_probs=72.0
Q ss_pred ceEEEEEecCCeEEEEecCCCce-eEEcCCCCC-CcceEEEEEecCCeEEEEe-cCCeEEEEeCCCceEEEeecCCC---
Q 009560 67 TQVQIKSVTLEKYVCAESGGGTD-VSVTRDVAS-SWETFTLWRVSESEFQFRT-SQGQFLTCDGEGCVVSATAKSPS--- 140 (532)
Q Consensus 67 ~~v~~~s~~~~~yv~ae~gg~~~-l~anr~~~~-~wE~f~~~~~~~~~~~lr~-~~~~~v~~~~~g~~~~a~~~~~~--- 140 (532)
--|.|||- ||||+.+.+.++-+ |-...+.+. +--.|++--..++.+.+|+ ++||||.+. .. =+.|.++.|.
T Consensus 6 ~~V~FKg~-n~kYLry~~~~~~~~lqf~~ddI~dp~v~~ev~~~~dg~V~ik~~~~nKfWr~s-~~-WI~a~s~d~~e~~ 82 (139)
T smart00791 6 IYVLFKGN-NQKYLRYQSIQQYGLLQFSADKILDPLVQFEVFPTYNGLVHIKSNYTNKFWRLS-HY-WITADANDPDENK 82 (139)
T ss_pred EEEEEEcC-CCceEEEEeecccceeEecccccCCcceeEEEEEcCCCcEEEEecCCCceEccC-CC-EEEecCCCCccCC
Confidence 36899996 99999998876665 444555553 4455665557788999999 899999775 33 4777777762
Q ss_pred -CCceEEEEEcCCCcEEEEe-cCCceEEec
Q 009560 141 -TPETFEIERNNDSRVHIKL-KSGTYLQAT 168 (532)
Q Consensus 141 -~~e~F~~v~~~~~~v~i~a-~nG~~l~a~ 168 (532)
.-.-|.-++.+++.++++- -||.|+.-.
T Consensus 83 sscTLF~Pv~~d~~~i~lr~vq~~~~~~r~ 112 (139)
T smart00791 83 SACTLFRPLYVEMKKIRLLNVQLGHYTKRY 112 (139)
T ss_pred CcccEEeEEeccCceEEEEEecCCceEEee
Confidence 3346888886678999876 888888643
No 55
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=95.81 E-value=1.7 Score=51.12 Aligned_cols=104 Identities=9% Similarity=0.184 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEc---CCCCCCC---CCCCC-----------CCCCCCCCCCC-----ChhhHHHHHHHHH
Q 009560 265 LEALDNALSWAEAYNIKCIIDL---HAAPGSQ---NGMEH-----------SASRDGTTDWP-----ASDYISQTLDVID 322 (532)
Q Consensus 265 l~~Ld~~v~~a~k~Gi~VILDl---H~~pGsq---n~~~~-----------sg~~~g~~~W~-----~~~~~~~~~~~w~ 322 (532)
+..++++|+.|.++||+||||+ |..++.. ..++. .|.......+. ++..++..++.++
T Consensus 403 i~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~ 482 (898)
T TIGR02103 403 IKEFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLV 482 (898)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999995 5443221 10110 01000001111 3456677778888
Q ss_pred HHHHHhCCCCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEeCCCC
Q 009560 323 FLASRYAKHPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQRIG 380 (532)
Q Consensus 323 ~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~~~~ 380 (532)
..+++|+= ..+- |+++..- -.++++++.+++|+.+|+.+ +++.+|.
T Consensus 483 ~W~~ey~V-DGFR-fDlm~~~---------~~~f~~~~~~~l~~i~pdi~-l~GEgW~ 528 (898)
T TIGR02103 483 VWAKDYKV-DGFR-FDLMGHH---------PKAQMLAAREAIKALTPEIY-FYGEGWD 528 (898)
T ss_pred HHHHHcCC-CEEE-EechhhC---------CHHHHHHHHHHHHHhCCCEE-EEecCCC
Confidence 88888863 3333 7777543 23456778888999999754 5666664
No 56
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=95.80 E-value=0.13 Score=43.98 Aligned_cols=83 Identities=20% Similarity=0.323 Sum_probs=61.3
Q ss_pred cceEEEEEecCCeEEEEecCC---CceeEEcCCCCCCcceEEEEEecCCeEEEEe-cCCeEEEEeCC----CceEEEeec
Q 009560 66 GTQVQIKSVTLEKYVCAESGG---GTDVSVTRDVASSWETFTLWRVSESEFQFRT-SQGQFLTCDGE----GCVVSATAK 137 (532)
Q Consensus 66 g~~v~~~s~~~~~yv~ae~gg---~~~l~anr~~~~~wE~f~~~~~~~~~~~lr~-~~~~~v~~~~~----g~~~~a~~~ 137 (532)
+....|+++..|+||.+..++ |+.|+.-.....+-+.|+|...++++|.|++ ..++.+.+.++ |..|+--..
T Consensus 14 ~g~Y~i~n~~sg~~L~v~~~~~~~g~~v~~~~~~~~~~Q~W~i~~~~~g~y~I~n~~s~~~Ldv~~~~~~~g~~v~~~~~ 93 (105)
T PF14200_consen 14 DGYYKIRNVNSGKYLDVAGGSTANGTNVQQWTCNGNDNQQWKIEPVGDGYYRIRNKNSGKVLDVAGGSTANGTNVQQWEY 93 (105)
T ss_dssp TTEEEEEETTTTEEEEEGCTTCSTTEBEEEEESSSSGGGEEEEEESTTSEEEEEETSTTEEEEEGGGSSSTTEBEEEEE-
T ss_pred CCEEEEEECCCCCEEEeCCCCcCCCcEEEEecCCCCcCcEEEEEEecCCeEEEEECCCCcEEEECCCCCCCCCEEEEEeC
Confidence 467999999999999998874 5566664444488999999999999999999 67888888632 334444333
Q ss_pred -CCCCCceEEEE
Q 009560 138 -SPSTPETFEIE 148 (532)
Q Consensus 138 -~~~~~e~F~~v 148 (532)
.-++...|.|+
T Consensus 94 ~~~~~~Q~W~l~ 105 (105)
T PF14200_consen 94 DNGSDNQQWKLE 105 (105)
T ss_dssp STSSGGGEEEEE
T ss_pred CCCCccCEEEeC
Confidence 55667777663
No 57
>PRK14705 glycogen branching enzyme; Provisional
Probab=95.78 E-value=5.1 Score=48.71 Aligned_cols=146 Identities=15% Similarity=0.180 Sum_probs=83.6
Q ss_pred HHHHHHHHHcCCCEEEE-ccc------cccccCCCCCCCCC--cChHHHHHHHHHHHHHcCCEEEEEc---CCCCCC---
Q 009560 228 IEDFNFLYRHGINTVRI-PVG------WWIAFDPDPPAPFI--GGSLEALDNALSWAEAYNIKCIIDL---HAAPGS--- 292 (532)
Q Consensus 228 e~d~~~la~~G~N~VRI-pv~------ww~~~~~~~~~~~~--~~~l~~Ld~~v~~a~k~Gi~VILDl---H~~pGs--- 292 (532)
++-++.||++|+|+|=| ||. .|- .++....... =+..+.|+++|+.|.++||+||||+ |..+..
T Consensus 769 ~~lldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~l 847 (1224)
T PRK14705 769 KELVDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWAL 847 (1224)
T ss_pred HHHHHHHHHhCCCEEEECccccCCCCCCCC-CCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcchhhh
Confidence 45589999999999987 552 121 1211110001 1368999999999999999999995 322110
Q ss_pred --CC---CCCCCCCC-CCCCCCC-------ChhhHHHHHHHHHHHHHHhCCCCcEEEEEec---------c-----CCCC
Q 009560 293 --QN---GMEHSASR-DGTTDWP-------ASDYISQTLDVIDFLASRYAKHPALLGIELL---------N-----EPSA 345 (532)
Q Consensus 293 --qn---~~~~sg~~-~g~~~W~-------~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~---------N-----EP~~ 345 (532)
-+ -+.|.... .....|. +++.++..++...+..++|.=+. +- ++.. - .|+.
T Consensus 848 ~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyhiDG-fR-~Dav~~mly~Dysr~~g~w~pn~ 925 (1224)
T PRK14705 848 AQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFHIDG-LR-VDAVASMLYLDYSREEGQWRPNR 925 (1224)
T ss_pred hhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCCc-EE-Eeehhhhhhcccccccccccccc
Confidence 00 01111111 1122343 45667777777777788775321 11 2211 0 1221
Q ss_pred CC-CCcccHHHHHHHHHHHHHhhCCCcEEEEe
Q 009560 346 AT-VPLDILVPYYKQGYQIVRKYSPTAYVIVC 376 (532)
Q Consensus 346 ~~-~~~~~l~~~~~~~~~aIR~~~~~~~Viv~ 376 (532)
.+ -....-..+++.+...|++..|+.++|-+
T Consensus 926 ~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAE 957 (1224)
T PRK14705 926 FGGRENLEAISFLQEVNATVYKTHPGAVMIAE 957 (1224)
T ss_pred cCCccChHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 11 01123467899999999999998877765
No 58
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=95.76 E-value=0.36 Score=42.71 Aligned_cols=101 Identities=19% Similarity=0.201 Sum_probs=77.3
Q ss_pred eEEEEEecCCeEEEEecCCCceeEEcCCCCCCcceEEEEEecCCeEEEEe-cCCeEEEEeCCCceEEEeecCCCCCceEE
Q 009560 68 QVQIKSVTLEKYVCAESGGGTDVSVTRDVASSWETFTLWRVSESEFQFRT-SQGQFLTCDGEGCVVSATAKSPSTPETFE 146 (532)
Q Consensus 68 ~v~~~s~~~~~yv~ae~gg~~~l~anr~~~~~wE~f~~~~~~~~~~~lr~-~~~~~v~~~~~g~~~~a~~~~~~~~e~F~ 146 (532)
.++|=+.+ |+||.....| .|.+-++.-+....|++...+.+.+.||+ ..++|+|.+..|- |.+. ..+..-+.|.
T Consensus 2 ~~~Ly~~~-~~~L~i~~~g--~V~gt~~~~~~~s~~~i~~~~~g~V~i~~~~s~~YLcmn~~G~-ly~~-~~~~~~C~F~ 76 (122)
T PF00167_consen 2 HVQLYCRT-GYFLQINPNG--TVDGTGDDNSPYSVFEIHSVGFGVVRIRGVKSCRYLCMNKCGR-LYGS-KNFNKDCVFR 76 (122)
T ss_dssp EEEEEETT-SEEEEEETTS--BEEEESSTTSTTGEEEEEEEETTEEEEEETTTTEEEEEBTTSB-EEEE-SSBTGGGEEE
T ss_pred CEEEEECC-CeEEEECCCC--eEeCCCCcCcceeEEEEEeccceEEEEEEecceEEEEECCCCe-Eccc-cccCCCceEE
Confidence 46777755 9999998865 67777777778889998888889999999 7899999998884 7775 5566799998
Q ss_pred EEEcCCCcEEEEec---CCceEEeccCceE
Q 009560 147 IERNNDSRVHIKLK---SGTYLQATLGNQL 173 (532)
Q Consensus 147 ~v~~~~~~v~i~a~---nG~~l~a~~~~~v 173 (532)
-....+.-..+... .+.||..+..|..
T Consensus 77 e~~~~n~y~~~~s~~~~~~~yla~~~~G~~ 106 (122)
T PF00167_consen 77 EELLENGYNTYESAKYGRGWYLAFNRRGKP 106 (122)
T ss_dssp EEEETTSEEEEEESTTGTTEBCEBCTTSBB
T ss_pred EEEccCCEEEEEeccCCccEEEEECCCCCC
Confidence 66654555555552 5888888776653
No 59
>smart00642 Aamy Alpha-amylase domain.
Probab=95.73 E-value=0.036 Score=52.00 Aligned_cols=60 Identities=22% Similarity=0.337 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCCEEEEccccccc--------cCCCCCCCCCc--ChHHHHHHHHHHHHHcCCEEEEEcC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIA--------FDPDPPAPFIG--GSLEALDNALSWAEAYNIKCIIDLH 287 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~--------~~~~~~~~~~~--~~l~~Ld~~v~~a~k~Gi~VILDlH 287 (532)
.+.++.|+++|+|+|-|+--+... .++......++ +..+.|+++|+.|+++||+||+|+-
T Consensus 22 ~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 22 IEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred HHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 455679999999999985432111 11111111111 4689999999999999999999975
No 60
>PRK10785 maltodextrin glucosidase; Provisional
Probab=95.70 E-value=0.31 Score=55.01 Aligned_cols=150 Identities=16% Similarity=0.243 Sum_probs=81.0
Q ss_pred HHHHHHHHHcCCCEEEE-cccccc---ccCCCCCCCCCc--ChHHHHHHHHHHHHHcCCEEEEEc---CCCCCC------
Q 009560 228 IEDFNFLYRHGINTVRI-PVGWWI---AFDPDPPAPFIG--GSLEALDNALSWAEAYNIKCIIDL---HAAPGS------ 292 (532)
Q Consensus 228 e~d~~~la~~G~N~VRI-pv~ww~---~~~~~~~~~~~~--~~l~~Ld~~v~~a~k~Gi~VILDl---H~~pGs------ 292 (532)
.+-++.|+++|+|+|=| ||.-.. ..++......++ +..+.|+++|+.|+++||+||||+ |..+.+
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~~f~~~ 261 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSHPWFDRH 261 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCCHHHHHh
Confidence 46689999999999988 432100 001111111122 468999999999999999999996 322211
Q ss_pred CCC----CCCCCC---------CCC-CCCC-----------CChhhHHHHHHHHHHHHHHhCCC-CcE--EEEEeccCCC
Q 009560 293 QNG----MEHSAS---------RDG-TTDW-----------PASDYISQTLDVIDFLASRYAKH-PAL--LGIELLNEPS 344 (532)
Q Consensus 293 qn~----~~~sg~---------~~g-~~~W-----------~~~~~~~~~~~~w~~la~ry~~~-p~v--~g~EL~NEP~ 344 (532)
.++ +.++.+ ..+ ...| .+++.++.+++-+..+++++-+. -.| +=++..+|-.
T Consensus 262 ~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~ 341 (598)
T PRK10785 262 NRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLG 341 (598)
T ss_pred hccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhc
Confidence 000 000000 001 1122 24556666655444455554332 122 2366777632
Q ss_pred CCCCCcccHHHHHHHHHHHHHhhCCCcEEEEeCCC
Q 009560 345 AATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQRI 379 (532)
Q Consensus 345 ~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~~~ 379 (532)
... ....-.++.+++.+++|+..|+.+++ +..|
T Consensus 342 ~~~-~~~~~~~f~~~~~~~vk~~~pd~~li-gE~~ 374 (598)
T PRK10785 342 EGG-GARNNLQHVAGITQAAKEENPEAYVL-GEHF 374 (598)
T ss_pred ccc-CccccHHHHHHHHHHHHhhCCCeEEE-Eecc
Confidence 111 11223467788889999999987654 4333
No 61
>PLN00197 beta-amylase; Provisional
Probab=95.66 E-value=0.09 Score=57.25 Aligned_cols=60 Identities=18% Similarity=0.484 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCE--EEEEcCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIK--CIIDLHAAPG 291 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~--VILDlH~~pG 291 (532)
+..++.||.+|+.-|=++| ||-..+...|..| .|..++++++.+++.||+ |||.+|..-|
T Consensus 130 ~~~L~~LK~~GVdGVmvDv-WWGiVE~~~p~~Y---dWsgY~~L~~mvr~~GLKlq~VmSFHqCGG 191 (573)
T PLN00197 130 KASLQALKSAGVEGIMMDV-WWGLVERESPGVY---NWGGYNELLEMAKRHGLKVQAVMSFHQCGG 191 (573)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeeeccCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 7889999999999999999 7777787667677 589999999999999997 6778887433
No 62
>PLN02161 beta-amylase
Probab=95.62 E-value=0.094 Score=56.60 Aligned_cols=59 Identities=15% Similarity=0.341 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCE--EEEEcCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIK--CIIDLHAAP 290 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~--VILDlH~~p 290 (532)
+..++.||.+|++.|=++| ||-..+...+..| .|..++++++.+++.||+ |||.+|..-
T Consensus 120 ~~~L~~LK~~GVdGVmvDV-WWGiVE~~~p~~Y---dWsgY~~l~~mvr~~GLKlq~vmSFHqCG 180 (531)
T PLN02161 120 TVSLKALKLAGVHGIAVEV-WWGIVERFSPLEF---KWSLYEELFRLISEAGLKLHVALCFHSNM 180 (531)
T ss_pred HHHHHHHHHcCCCEEEEEe-eeeeeecCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecccC
Confidence 7899999999999999999 7777787667677 589999999999999997 677888743
No 63
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=95.61 E-value=1 Score=46.65 Aligned_cols=244 Identities=14% Similarity=0.200 Sum_probs=118.7
Q ss_pred HHHHHHHHHcCCCEEEEccccc---cccCCCCCCC--C--CcChHHHHHHHHHHHHHcCCEEEEEcCCCCCC----C---
Q 009560 228 IEDFNFLYRHGINTVRIPVGWW---IAFDPDPPAP--F--IGGSLEALDNALSWAEAYNIKCIIDLHAAPGS----Q--- 293 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww---~~~~~~~~~~--~--~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGs----q--- 293 (532)
++-++.+++.|+|+|=|.|-=- ...+...+.. . .......++++++.++++|||+|-=+..+.-. .
T Consensus 16 ~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la~~~pe 95 (316)
T PF13200_consen 16 DKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVLAEAHPE 95 (316)
T ss_pred HHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHHhhhChh
Confidence 6789999999999999977310 0111111100 0 11124678999999999999999754432110 0
Q ss_pred --------CCCCCCCCCCCCCCCCCh---hhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC-------------CCCCC
Q 009560 294 --------NGMEHSASRDGTTDWPAS---DYISQTLDVIDFLASRYAKHPALLGIELLNEPS-------------AATVP 349 (532)
Q Consensus 294 --------n~~~~sg~~~g~~~W~~~---~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~-------------~~~~~ 349 (532)
..|.+. ....|.+| +.++..+++.+.+|+. +...|. ||=+==|. .....
T Consensus 96 ~av~~~~G~~w~d~----~~~~WvnP~~~evw~Y~i~IA~Eaa~~--GFdEIq-fDYIRFP~~~~~~~l~y~~~~~~~~r 168 (316)
T PF13200_consen 96 WAVKTKDGSVWRDN----EGEAWVNPYSKEVWDYNIDIAKEAAKL--GFDEIQ-FDYIRFPDEGRLSGLDYSENDTEESR 168 (316)
T ss_pred hEEECCCCCcccCC----CCCccCCCCCHHHHHHHHHHHHHHHHc--CCCEEE-eeeeecCCCCcccccccCCCCCcchH
Confidence 011110 12347765 5566667777777763 111111 11111122 11012
Q ss_pred cccHHHHHHHHHHHHHhhCCCcEEEE-eC-CCCC------CCchhhhhccCCCCcEEEEeeecccC-CC---ccccCChh
Q 009560 350 LDILVPYYKQGYQIVRKYSPTAYVIV-CQ-RIGN------ADPLELYQANIGLHNIVVDLHYYNLF-DT---FFVNMSTV 417 (532)
Q Consensus 350 ~~~l~~~~~~~~~aIR~~~~~~~Viv-~~-~~~~------~~~~~~~~~~~~~~nvv~s~H~Y~~f-~~---~~~~~~~~ 417 (532)
.+.+.+|++.+.+.+++.+...-+=| +- .+.. ++...+. ..-.+++.=.|+-+ .. .+.....+
T Consensus 169 ~~aI~~Fl~~a~~~l~~~~v~vSaDVfG~~~~~~~~~~iGQ~~~~~a-----~~vD~IsPMiYPSh~~~g~~g~~~P~~~ 243 (316)
T PF13200_consen 169 VDAITDFLAYAREELHPYGVPVSADVFGYVAWSPDDMGIGQDFEKIA-----EYVDYISPMIYPSHYGPGFFGIDKPDLE 243 (316)
T ss_pred HHHHHHHHHHHHHHHhHcCCCEEEEecccccccCCCCCcCCCHHHHh-----hhCCEEEecccccccCcccCCCCCcccC
Confidence 36788999999999988875422222 21 1210 1222222 22334444444431 11 11111111
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCcE---EEeccCcccCCCCCCHHHH-HHHHHHHHHHHHhCC-CcEEEEcccC
Q 009560 418 DNILFIYKSREAQLQALNNANGPLV---FIGEWVNEWNVTSGTQKDY-QDFGSAQLEVYNAAS-FGWAYWTLKN 486 (532)
Q Consensus 418 ~~i~~i~~~~~~~~~~~~~~~g~pv---~vGEwG~~~~~~~a~~~~~-~~~~~~ql~~~~~~~-~Gw~yW~~k~ 486 (532)
. -..+..........+....++++ ++--|...|-.. ....| ...+++|+.+....+ -||++|.-.+
T Consensus 244 P-Y~~v~~~~~~~~~~~~~~~~~~~~RPWlQ~Ft~~~~~~--~~~~Yg~~ev~aQI~A~~d~g~~~~llWna~n 314 (316)
T PF13200_consen 244 P-YEIVYRSLKRAKERLRGLEGPAIIRPWLQDFTASWLGK--NYKEYGPEEVRAQIQALKDAGIEGWLLWNASN 314 (316)
T ss_pred h-HHHHHHHHHHHHHHhhcCCCCCeEeccccccccccccc--CccccCHHHHHHHHHHHHHcCCCeEEEECCCC
Confidence 1 12222222222222222211222 466666665322 22334 667899997776544 5999997554
No 64
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=95.59 E-value=0.39 Score=53.59 Aligned_cols=134 Identities=17% Similarity=0.238 Sum_probs=76.0
Q ss_pred HHHHHHHHcCCCEEEE-cccc------ccccCCCCCCCCC--cChHHHHHHHHHHHHHcCCEEEEEc---CCCCCCCCC-
Q 009560 229 EDFNFLYRHGINTVRI-PVGW------WIAFDPDPPAPFI--GGSLEALDNALSWAEAYNIKCIIDL---HAAPGSQNG- 295 (532)
Q Consensus 229 ~d~~~la~~G~N~VRI-pv~w------w~~~~~~~~~~~~--~~~l~~Ld~~v~~a~k~Gi~VILDl---H~~pGsqn~- 295 (532)
+.++.|+++|+|+|=| ||.- |- .++......+ =+..+.|+++|+.|.++||+||||+ |..+.+...
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~G-Y~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~~~~ 193 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWG-YDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYNHFGPEGNYLP 193 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCC-CCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCcccccc
Confidence 4589999999999998 4411 11 1111100001 1468899999999999999999995 433321100
Q ss_pred -CCCCCCCCCCCCCC------Ch---hhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHH
Q 009560 296 -MEHSASRDGTTDWP------AS---DYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVPLDILVPYYKQGYQIVR 365 (532)
Q Consensus 296 -~~~sg~~~g~~~W~------~~---~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR 365 (532)
+...-.......|. ++ ..++.+++..+...++|+= ..+- +++...-.. ..-..+.+++.+++|
T Consensus 194 ~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~i-DGfR-~D~~~~~~~-----~~~~~~l~~~~~~~~ 266 (542)
T TIGR02402 194 RYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYHF-DGLR-LDAVHAIAD-----TSAKHILEELAREVH 266 (542)
T ss_pred ccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCC-cEEE-EeCHHHhcc-----ccHHHHHHHHHHHHH
Confidence 00000001112232 34 5666777777777777752 2222 444433211 112467888899999
Q ss_pred hhCCC
Q 009560 366 KYSPT 370 (532)
Q Consensus 366 ~~~~~ 370 (532)
+..|+
T Consensus 267 ~~~p~ 271 (542)
T TIGR02402 267 ELAAE 271 (542)
T ss_pred HHCCC
Confidence 99988
No 65
>PRK05402 glycogen branching enzyme; Provisional
Probab=95.56 E-value=0.38 Score=55.58 Aligned_cols=146 Identities=13% Similarity=0.195 Sum_probs=83.6
Q ss_pred HHHHHHHHHcCCCEEEE-cccccc-----ccCCCCCCCCCc--ChHHHHHHHHHHHHHcCCEEEEEc---CCCCCCC--C
Q 009560 228 IEDFNFLYRHGINTVRI-PVGWWI-----AFDPDPPAPFIG--GSLEALDNALSWAEAYNIKCIIDL---HAAPGSQ--N 294 (532)
Q Consensus 228 e~d~~~la~~G~N~VRI-pv~ww~-----~~~~~~~~~~~~--~~l~~Ld~~v~~a~k~Gi~VILDl---H~~pGsq--n 294 (532)
++-++.|+++|+|+|=| ||.-.. ..++......++ +..+.|+++|+.|.++||+||||+ |..+.+. .
T Consensus 269 ~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~ 348 (726)
T PRK05402 269 DQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAHFPKDAHGLA 348 (726)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCccchh
Confidence 44468999999999987 552100 011111100111 468899999999999999999996 4432110 0
Q ss_pred C------CCCCCCCC-CCCCC-------CChhhHHHHHHHHHHHHHHhCCCCcEEEEEec-cCC---------------C
Q 009560 295 G------MEHSASRD-GTTDW-------PASDYISQTLDVIDFLASRYAKHPALLGIELL-NEP---------------S 344 (532)
Q Consensus 295 ~------~~~sg~~~-g~~~W-------~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~-NEP---------------~ 344 (532)
. +.+..... ....| .+++.++..++..+...++|+=+ .+- ++.. ++. .
T Consensus 349 ~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~iD-G~R-~D~v~~~~~~~~~~~~g~~~~~~~ 426 (726)
T PRK05402 349 RFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFHID-GLR-VDAVASMLYLDYSRKEGEWIPNIY 426 (726)
T ss_pred ccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhCCc-EEE-ECCHHHhhhccccccccccccccc
Confidence 0 11111000 11223 35677778888888888777522 111 3321 221 1
Q ss_pred CCCCCcccHHHHHHHHHHHHHhhCCCcEEEEe
Q 009560 345 AATVPLDILVPYYKQGYQIVRKYSPTAYVIVC 376 (532)
Q Consensus 345 ~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~ 376 (532)
... ....-..+.+.+.+.||+..|+.++|-+
T Consensus 427 ~~~-~~~~~~~fl~~~~~~~~~~~p~~~liaE 457 (726)
T PRK05402 427 GGR-ENLEAIDFLRELNAVVHEEFPGALTIAE 457 (726)
T ss_pred cCc-CCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 111 1123467889999999999999877665
No 66
>PLN02801 beta-amylase
Probab=95.54 E-value=0.12 Score=55.72 Aligned_cols=60 Identities=20% Similarity=0.526 Sum_probs=51.2
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCE--EEEEcCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIK--CIIDLHAAPG 291 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~--VILDlH~~pG 291 (532)
++.++.||++|+..|=++| ||-..+...+..| .|..++++++.+++.||+ |||.+|..-|
T Consensus 40 ~~~L~~LK~~GVdGVmvDV-WWGiVE~~~P~~Y---dWsgY~~l~~mvr~~GLKlq~vmSFHqCGG 101 (517)
T PLN02801 40 EKQLKRLKEAGVDGVMVDV-WWGIVESKGPKQY---DWSAYRSLFELVQSFGLKIQAIMSFHQCGG 101 (517)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeeeccCCCCcc---CcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 7889999999999999999 7777777666677 589999999999999997 5788897433
No 67
>PRK12313 glycogen branching enzyme; Provisional
Probab=95.53 E-value=0.48 Score=53.88 Aligned_cols=146 Identities=16% Similarity=0.176 Sum_probs=82.3
Q ss_pred HHHHHHHHHcCCCEEEE-cccccc-----ccCCCCCCCCC--cChHHHHHHHHHHHHHcCCEEEEEc---CCCCCCC--C
Q 009560 228 IEDFNFLYRHGINTVRI-PVGWWI-----AFDPDPPAPFI--GGSLEALDNALSWAEAYNIKCIIDL---HAAPGSQ--N 294 (532)
Q Consensus 228 e~d~~~la~~G~N~VRI-pv~ww~-----~~~~~~~~~~~--~~~l~~Ld~~v~~a~k~Gi~VILDl---H~~pGsq--n 294 (532)
++-++.|+++|+|+|=| ||.-.. ..++......+ =+..+.|+++|+.|.++||+||||+ |..+... .
T Consensus 174 ~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~~~~~ 253 (633)
T PRK12313 174 DELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVPGHFPKDDDGLA 253 (633)
T ss_pred HHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCccccc
Confidence 44469999999999986 552100 01111110111 1468999999999999999999995 3322110 0
Q ss_pred CCC------CCCC-CCCCCCC-------CChhhHHHHHHHHHHHHHHhCCCCcEEEEEec-cC------------CC--C
Q 009560 295 GME------HSAS-RDGTTDW-------PASDYISQTLDVIDFLASRYAKHPALLGIELL-NE------------PS--A 345 (532)
Q Consensus 295 ~~~------~sg~-~~g~~~W-------~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~-NE------------P~--~ 345 (532)
.++ +... ......| .+++.++..++..+...++|.=+ .+- ++.. +. |. .
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iD-G~R-~D~~~~~~~~d~~~~~~~~~~~~~ 331 (633)
T PRK12313 254 YFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLD-GLR-VDAVSNMLYLDYDEEGEWTPNKYG 331 (633)
T ss_pred ccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCc-EEE-EcChhhhhhcccccccCcCCcccC
Confidence 011 0000 0011123 35677888888888888777522 111 2211 11 11 1
Q ss_pred CCCCcccHHHHHHHHHHHHHhhCCCcEEEEe
Q 009560 346 ATVPLDILVPYYKQGYQIVRKYSPTAYVIVC 376 (532)
Q Consensus 346 ~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~ 376 (532)
..... .-.++.+.+.+.||+..|+.++|-+
T Consensus 332 ~~~~~-~~~~fl~~~~~~v~~~~p~~~liaE 361 (633)
T PRK12313 332 GRENL-EAIYFLQKLNEVVYLEHPDVLMIAE 361 (633)
T ss_pred CCCCc-HHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 11111 3467899999999999999776655
No 68
>PLN02803 beta-amylase
Probab=95.44 E-value=0.12 Score=56.21 Aligned_cols=60 Identities=18% Similarity=0.441 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCE--EEEEcCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIK--CIIDLHAAPG 291 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~--VILDlH~~pG 291 (532)
+..++.||.+|++-|=++| ||-..+...+..| .|..++++++.+++.||+ |||.+|..-|
T Consensus 110 ~~~L~~LK~~GVdGVmvDV-WWGiVE~~~p~~Y---dWsgY~~l~~mvr~~GLKlq~vmSFHqCGG 171 (548)
T PLN02803 110 NASLMALRSAGVEGVMVDA-WWGLVEKDGPMKY---NWEGYAELVQMVQKHGLKLQVVMSFHQCGG 171 (548)
T ss_pred HHHHHHHHHcCCCEEEEEe-eeeeeccCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 7889999999999999999 7778787766677 589999999999999997 5778887433
No 69
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=95.34 E-value=0.047 Score=49.59 Aligned_cols=66 Identities=23% Similarity=0.397 Sum_probs=46.1
Q ss_pred ceEEEEEecCCeEEEEecCCeEEEEeCCCceEEEeecCCCCCceEEE--EEcCCCcEEEEecCCceEEeccC
Q 009560 101 ETFTLWRVSESEFQFRTSQGQFLTCDGEGCVVSATAKSPSTPETFEI--ERNNDSRVHIKLKSGTYLQATLG 170 (532)
Q Consensus 101 E~f~~~~~~~~~~~lr~~~~~~v~~~~~g~~~~a~~~~~~~~e~F~~--v~~~~~~v~i~a~nG~~l~a~~~ 170 (532)
|.|+ +...+.||+..++|+.||.+|..+.=.+.-......+.+ +..+.+.|+||+.-|+||.|.+.
T Consensus 2 e~F~----d~~~VRLRS~~~kYL~ADeDg~~Vs~~~~~~s~na~W~Ve~v~~~~~~v~L~saYGrYL~as~~ 69 (142)
T PF04601_consen 2 EFFP----DGKHVRLRSHHGKYLHADEDGEGVSQDRRGASLNAAWTVERVPGSPNYVRLRSAYGRYLAASDE 69 (142)
T ss_pred CccC----CCCEEEEEecCCCEEEEcCCCCeEEECCCCCCCcceEEEEEecCCCCEEEEeeccCceEeccCC
Confidence 5565 455699999999999999777634434433334444544 44435789999999999988754
No 70
>PLN02705 beta-amylase
Probab=95.26 E-value=0.14 Score=56.18 Aligned_cols=60 Identities=12% Similarity=0.385 Sum_probs=51.5
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCE--EEEEcCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIK--CIIDLHAAPG 291 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~--VILDlH~~pG 291 (532)
+..++.||.+|+.-|=++| ||-..+...+..| .|..++++++.+++.||+ |||.+|..-|
T Consensus 271 ~a~L~aLK~aGVdGVmvDV-WWGiVE~~~P~~Y---dWsgY~~L~~mvr~~GLKlqvVmSFHqCGG 332 (681)
T PLN02705 271 RQELSHMKSLNVDGVVVDC-WWGIVEGWNPQKY---VWSGYRELFNIIREFKLKLQVVMAFHEYGG 332 (681)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeEeecCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEeeccCC
Confidence 7889999999999999999 7777787666677 589999999999999997 6788897533
No 71
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=95.25 E-value=6.4 Score=44.58 Aligned_cols=136 Identities=15% Similarity=0.258 Sum_probs=78.0
Q ss_pred HHHHHHHHcCCCEEEE-cccc--------------ccccCCCCC---------CCCCc-ChHHHHHHHHHHHHHcCCEEE
Q 009560 229 EDFNFLYRHGINTVRI-PVGW--------------WIAFDPDPP---------APFIG-GSLEALDNALSWAEAYNIKCI 283 (532)
Q Consensus 229 ~d~~~la~~G~N~VRI-pv~w--------------w~~~~~~~~---------~~~~~-~~l~~Ld~~v~~a~k~Gi~VI 283 (532)
+-++.|+++|+|+|=| ||.- |- .++... .|..+ +..+.|+++|+.|.++||+||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wG-Y~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWG-YDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCC-CCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4689999999999988 5531 11 111100 01011 136889999999999999999
Q ss_pred EEc---CCCCCCCCCCCC-----------CCCCCCCCCC------CChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCC
Q 009560 284 IDL---HAAPGSQNGMEH-----------SASRDGTTDW------PASDYISQTLDVIDFLASRYAKHPALLGIELLNEP 343 (532)
Q Consensus 284 LDl---H~~pGsqn~~~~-----------sg~~~g~~~W------~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP 343 (532)
||+ |...+..+.++. .|.......| .++..++..++..+...++|+= ..+- ++++..-
T Consensus 247 lDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~i-DGfR-~D~~~~~ 324 (605)
T TIGR02104 247 MDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYNI-DGFR-FDLMGIH 324 (605)
T ss_pred EEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcCC-CEEE-EechhcC
Confidence 995 443211111110 0100000111 2456677777777777777742 2333 5656332
Q ss_pred CCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEe
Q 009560 344 SAATVPLDILVPYYKQGYQIVRKYSPTAYVIVC 376 (532)
Q Consensus 344 ~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~ 376 (532)
+ .++.+++.++||+..|+.+++-+
T Consensus 325 -----~----~~~~~~~~~~~~~~~p~~~ligE 348 (605)
T TIGR02104 325 -----D----IETMNEIRKALNKIDPNILLYGE 348 (605)
T ss_pred -----C----HHHHHHHHHHHHhhCCCeEEEEc
Confidence 2 33567788888999997765544
No 72
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=0.27 Score=52.55 Aligned_cols=150 Identities=13% Similarity=0.151 Sum_probs=99.9
Q ss_pred HHHHHHHHHcCCCEEEEcccc---cc-cc---CC--C----------------------CCCCCCcC----hHHHHHHHH
Q 009560 228 IEDFNFLYRHGINTVRIPVGW---WI-AF---DP--D----------------------PPAPFIGG----SLEALDNAL 272 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~w---w~-~~---~~--~----------------------~~~~~~~~----~l~~Ld~~v 272 (532)
|..|+.||=.|||.+=-|.+= |. .+ .- + =++|+.+. .+-.-+++|
T Consensus 81 eR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~LqkrIi 160 (666)
T KOG2233|consen 81 EREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQKRII 160 (666)
T ss_pred HhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHHHHHH
Confidence 899999999999988777431 11 00 00 0 01333332 344447799
Q ss_pred HHHHHcCCEEEEEcCCC--CC--------C----CCCCCCCCCCCCCCCC---CChhhHHHHHHHHHHHHHHhCCCCcEE
Q 009560 273 SWAEAYNIKCIIDLHAA--PG--------S----QNGMEHSASRDGTTDW---PASDYISQTLDVIDFLASRYAKHPALL 335 (532)
Q Consensus 273 ~~a~k~Gi~VILDlH~~--pG--------s----qn~~~~sg~~~g~~~W---~~~~~~~~~~~~w~~la~ry~~~p~v~ 335 (532)
+...+.||-+||--.+- |- + -..|++..++...... .+|-.++.-..+++++.+.|++..++.
T Consensus 161 drm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~tniy 240 (666)
T KOG2233|consen 161 DRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGVTNIY 240 (666)
T ss_pred HHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCccccc
Confidence 99999999999964421 11 1 0012221111110011 134567777899999999999989999
Q ss_pred EEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEeC
Q 009560 336 GIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQ 377 (532)
Q Consensus 336 g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~ 377 (532)
+-|.+||-..+...++.++...++++++++++|+++.-++.+
T Consensus 241 ~~DpFNE~~Pp~sepey~~staaAiyesm~kvdknaVWllQg 282 (666)
T KOG2233|consen 241 SADPFNEILPPESEPEYVKSTAAAIYESMKKVDKNAVWLLQG 282 (666)
T ss_pred ccCcccccCCCCCChHHHHHHHHHHHHHHhccCcceEEeeec
Confidence 999999977666677888999999999999999998766653
No 73
>PLN02960 alpha-amylase
Probab=95.09 E-value=0.74 Score=53.41 Aligned_cols=149 Identities=13% Similarity=0.163 Sum_probs=84.4
Q ss_pred HHHHHHHHHcCCCEEEE-cccc------ccccCCCCCCCCC--cChHHHHHHHHHHHHHcCCEEEEEc---CCCCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRI-PVGW------WIAFDPDPPAPFI--GGSLEALDNALSWAEAYNIKCIIDL---HAAPGSQNG 295 (532)
Q Consensus 228 e~d~~~la~~G~N~VRI-pv~w------w~~~~~~~~~~~~--~~~l~~Ld~~v~~a~k~Gi~VILDl---H~~pGsqn~ 295 (532)
++-+..|+++|+|+|=| ||.- |- .++......+ -+..+.|+++|+.|.++||+||||+ |..+...++
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swG-Y~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~~~ 498 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVG-YKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVG 498 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCC-CCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEecccccCCccccc
Confidence 45699999999999987 5521 10 1111000001 1357899999999999999999995 443321111
Q ss_pred ----------CCCCCCCCCCCCCC-------ChhhHHHHHHHHHHHHHHhCCC-------CcEEEEE--eccCCC-----
Q 009560 296 ----------MEHSASRDGTTDWP-------ASDYISQTLDVIDFLASRYAKH-------PALLGIE--LLNEPS----- 344 (532)
Q Consensus 296 ----------~~~sg~~~g~~~W~-------~~~~~~~~~~~w~~la~ry~~~-------p~v~g~E--L~NEP~----- 344 (532)
+.+.+.......|. +++.++..++...+..++|.=+ .+++-.+ ...++.
T Consensus 499 L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~ 578 (897)
T PLN02960 499 LSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEY 578 (897)
T ss_pred hhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCccccCCccccc
Confidence 11111111122343 3566777777777777776522 1222111 011111
Q ss_pred CCCCCcccHHHHHHHHHHHHHhhCCCcEEEEeC
Q 009560 345 AATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQ 377 (532)
Q Consensus 345 ~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~ 377 (532)
........-..+++.+-.+|++..|+.++|.++
T Consensus 579 ~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEd 611 (897)
T PLN02960 579 CNQYVDRDALIYLILANEMLHQLHPNIITIAED 611 (897)
T ss_pred CCccCCchHHHHHHHHHHHHHhhCCCeEEEEEC
Confidence 000112345668888999999999998888763
No 74
>PLN02905 beta-amylase
Probab=95.08 E-value=0.16 Score=56.08 Aligned_cols=60 Identities=13% Similarity=0.495 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCE--EEEEcCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIK--CIIDLHAAPG 291 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~--VILDlH~~pG 291 (532)
+..++.||.+|+..|=++| ||-..+...|..| .|..+.++++.+++.||+ |||.+|..-|
T Consensus 289 ~a~L~aLK~aGVdGVmvDV-WWGiVE~~gP~~Y---dWsgY~~L~~mvr~~GLKlqvVMSFHqCGG 350 (702)
T PLN02905 289 LKQLRILKSINVDGVKVDC-WWGIVEAHAPQEY---NWNGYKRLFQMVRELKLKLQVVMSFHECGG 350 (702)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeeeecCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 7889999999999999999 7778787767677 589999999999999997 6778887533
No 75
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=94.99 E-value=0.17 Score=54.98 Aligned_cols=153 Identities=20% Similarity=0.189 Sum_probs=98.0
Q ss_pred CHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCC
Q 009560 227 TIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTT 306 (532)
Q Consensus 227 te~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~ 306 (532)
++-.++-.++.|+|++|+ |. ++-|. -|..-+.|.+.||-|-=|+.-+- +-
T Consensus 359 ~~~LL~Sv~e~~MN~lRV----WG------GGvYE------sd~FY~lad~lGilVWQD~MFAC---------Al----- 408 (867)
T KOG2230|consen 359 TEFLLDSVAEVGMNMLRV----WG------GGVYE------SDYFYQLADSLGILVWQDMMFAC---------AL----- 408 (867)
T ss_pred HHHHHHHHHHhCcceEEE----ec------Ccccc------chhHHHHhhhccceehhhhHHHh---------hc-----
Confidence 345566678999999998 42 22332 24556789999999988876431 10
Q ss_pred CCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCC-------------CCCcccHHHHHHHHHHH-HHhhCCCcE
Q 009560 307 DWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAA-------------TVPLDILVPYYKQGYQI-VRKYSPTAY 372 (532)
Q Consensus 307 ~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~-------------~~~~~~l~~~~~~~~~a-IR~~~~~~~ 372 (532)
.-.+++..+-..+-.++=+.|.+.+|+|+.|.--||-... ....+...-+|++.+.. ..+.++.++
T Consensus 409 YPt~~eFl~sv~eEV~yn~~Rls~HpSviIfsgNNENEaAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srP 488 (867)
T KOG2230|consen 409 YPTNDEFLSSVREEVRYNAMRLSHHPSVIIFSGNNENEAALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRP 488 (867)
T ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCeEEEEeCCCccHHHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCC
Confidence 0123566677777778888999999999999999996531 11234455566664444 444567888
Q ss_pred EEEeCC-CCC-CCchhhhhccCCCCcEEEEeeecccCCCc
Q 009560 373 VIVCQR-IGN-ADPLELYQANIGLHNIVVDLHYYNLFDTF 410 (532)
Q Consensus 373 Viv~~~-~~~-~~~~~~~~~~~~~~nvv~s~H~Y~~f~~~ 410 (532)
.|++.. .|. ..+..+... .+.+|--=|+|+|+.+.+.
T Consensus 489 fi~SSPsNG~ete~e~~VS~-NP~dn~~GDVHfYdy~~d~ 527 (867)
T KOG2230|consen 489 FIVSSPSNGKETEPENYVSS-NPQDNQNGDVHFYDYTKDG 527 (867)
T ss_pred ceecCCCCCcccCccccccC-CCccccCCceEeeehhhcc
Confidence 787643 221 122333332 4556777899999986543
No 76
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.98 E-value=0.18 Score=55.95 Aligned_cols=109 Identities=11% Similarity=0.118 Sum_probs=74.3
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTD 307 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~ 307 (532)
++-++++|+.|+|+|-..|.|- .-+|.++ .|+=...-.|.+.|+.|++.|++|+|-+- |--|--|++.| -+.
T Consensus 52 ~~~i~k~k~~Gln~IqtYVfWn-~Hep~~g-~y~FsG~~DlvkFikl~~~~GLyv~LRiG--PyIcaEw~~GG----~P~ 123 (649)
T KOG0496|consen 52 PDLIKKAKAGGLNVIQTYVFWN-LHEPSPG-KYDFSGRYDLVKFIKLIHKAGLYVILRIG--PYICAEWNFGG----LPW 123 (649)
T ss_pred HHHHHHHHhcCCceeeeeeecc-cccCCCC-cccccchhHHHHHHHHHHHCCeEEEecCC--CeEEecccCCC----cch
Confidence 7899999999999999999885 5566555 44433444566679999999999999654 22222344433 223
Q ss_pred CC-----------ChhhHHHHHHHHHHHHHHh-----CCCCcEEEEEeccCCC
Q 009560 308 WP-----------ASDYISQTLDVIDFLASRY-----AKHPALLGIELLNEPS 344 (532)
Q Consensus 308 W~-----------~~~~~~~~~~~w~~la~ry-----~~~p~v~g~EL~NEP~ 344 (532)
|. ++....++.++++.|..+. ++-.-|+..++=||=.
T Consensus 124 wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 124 WLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred hhhhCCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 32 3566777778888777642 3334577799999963
No 77
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=94.88 E-value=0.057 Score=54.41 Aligned_cols=56 Identities=21% Similarity=0.403 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCC--------Cc--ChHHHHHHHHHHHHHcCCEEEEEc
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF--------IG--GSLEALDNALSWAEAYNIKCIIDL 286 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~--------~~--~~l~~Ld~~v~~a~k~Gi~VILDl 286 (532)
.+.++.|+++|+|+|-|+=-+- .+.....| ++ +..+.|+++|+.|+++||+||||+
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~---~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFE---SPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EE---SSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccc---cccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 4558899999999999953221 11111111 11 579999999999999999999996
No 78
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=94.84 E-value=0.041 Score=58.13 Aligned_cols=60 Identities=17% Similarity=0.437 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEE--EEEcCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKC--IIDLHAAPG 291 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~V--ILDlH~~pG 291 (532)
+..++.||++|+..|=++| ||-..+...|..| .|..++++++.+++.||++ ||.+|+..|
T Consensus 19 ~~~L~~LK~~GV~GVmvdv-WWGiVE~~~p~~y---dWs~Y~~l~~~vr~~GLk~~~vmsfH~cGg 80 (402)
T PF01373_consen 19 EAQLRALKSAGVDGVMVDV-WWGIVEGEGPQQY---DWSGYRELFEMVRDAGLKLQVVMSFHQCGG 80 (402)
T ss_dssp HHHHHHHHHTTEEEEEEEE-EHHHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S-BSS
T ss_pred HHHHHHHHHcCCcEEEEEe-EeeeeccCCCCcc---CcHHHHHHHHHHHHcCCeEEEEEeeecCCC
Confidence 7899999999999999999 7777777666676 5899999999999999985 667887644
No 79
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=94.54 E-value=0.26 Score=43.59 Aligned_cols=65 Identities=28% Similarity=0.284 Sum_probs=55.9
Q ss_pred EEEEecCCeEEEEeCCCceEEEeecCCCCCceEEEEEcCCCcEEEEe-cCCceEEeccCceEEeCCC
Q 009560 113 FQFRTSQGQFLTCDGEGCVVSATAKSPSTPETFEIERNNDSRVHIKL-KSGTYLQATLGNQLTSDYP 178 (532)
Q Consensus 113 ~~lr~~~~~~v~~~~~g~~~~a~~~~~~~~e~F~~v~~~~~~v~i~a-~nG~~l~a~~~~~v~ad~~ 178 (532)
++|=+.+|+|+....+|. |.++.+.......|+++..+.+.|+|+. ..++||+.+..|.|.+...
T Consensus 3 ~~Ly~~~~~~L~i~~~g~-V~gt~~~~~~~s~~~i~~~~~g~V~i~~~~s~~YLcmn~~G~ly~~~~ 68 (122)
T PF00167_consen 3 VQLYCRTGYFLQINPNGT-VDGTGDDNSPYSVFEIHSVGFGVVRIRGVKSCRYLCMNKCGRLYGSKN 68 (122)
T ss_dssp EEEEETTSEEEEEETTSB-EEEESSTTSTTGEEEEEEEETTEEEEEETTTTEEEEEBTTSBEEEESS
T ss_pred EEEEECCCeEEEECCCCe-EeCCCCcCcceeEEEEEeccceEEEEEEecceEEEEECCCCeEccccc
Confidence 455665699999999885 9999999899999999998778999998 7799999999999888643
No 80
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=94.51 E-value=1.5 Score=48.97 Aligned_cols=59 Identities=17% Similarity=0.320 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCCEEEEcccccccc-----CCCCCCCCCc--ChHHHHHHHHHHHHHcCCEEEEEc
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAF-----DPDPPAPFIG--GSLEALDNALSWAEAYNIKCIIDL 286 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~-----~~~~~~~~~~--~~l~~Ld~~v~~a~k~Gi~VILDl 286 (532)
.+-++.|+++|+|+|=|+=-+-... ++......++ +..+.++++|+.|+++||+||+|+
T Consensus 31 ~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 31 TSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4568999999999998832111000 0111011122 468999999999999999999995
No 81
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=94.03 E-value=1.5 Score=45.37 Aligned_cols=148 Identities=15% Similarity=0.179 Sum_probs=87.4
Q ss_pred HHHHHHHHHcCCCEEEEccccccc-cCCCCCCC---------CCcChHHHHHHHHHHHHHcCCEEEEEc----CCCCCC-
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIA-FDPDPPAP---------FIGGSLEALDNALSWAEAYNIKCIIDL----HAAPGS- 292 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~-~~~~~~~~---------~~~~~l~~Ld~~v~~a~k~Gi~VILDl----H~~pGs- 292 (532)
++.++.|+++|||+|=+-|..... +=++.-.| .....++-|..+|+.|+|+||.|.-=+ -..+.+
T Consensus 22 ~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~~~~~ 101 (311)
T PF02638_consen 22 DEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAPDVSH 101 (311)
T ss_pred HHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCCchhh
Confidence 678899999999999887743210 00111111 111258899999999999999987433 100000
Q ss_pred ---CCC-C---CCCCCC------CCCCCCCC---hhhHHHHHHHHHHHHHHhCCCCcEEEEE-ec--------cC-----
Q 009560 293 ---QNG-M---EHSASR------DGTTDWPA---SDYISQTLDVIDFLASRYAKHPALLGIE-LL--------NE----- 342 (532)
Q Consensus 293 ---qn~-~---~~sg~~------~g~~~W~~---~~~~~~~~~~w~~la~ry~~~p~v~g~E-L~--------NE----- 342 (532)
+.. + .+.+.. .+...|.+ |+.++..+++.+.|+++|. -..|. +| .+ ++
T Consensus 102 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd-vDGIh-lDdy~yp~~~~g~~~~~~~~ 179 (311)
T PF02638_consen 102 ILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD-VDGIH-LDDYFYPPPSFGYDFPDVAA 179 (311)
T ss_pred hhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC-CCeEE-ecccccccccCCCCCccHHH
Confidence 000 0 111110 02233554 5889999999999999984 23322 22 00 01
Q ss_pred --------CCCCCC-------CcccHHHHHHHHHHHHHhhCCCcEEEEeC
Q 009560 343 --------PSAATV-------PLDILVPYYKQGYQIVRKYSPTAYVIVCQ 377 (532)
Q Consensus 343 --------P~~~~~-------~~~~l~~~~~~~~~aIR~~~~~~~Viv~~ 377 (532)
|..... -.+.+..+.++++++|+++.|+..+-+++
T Consensus 180 y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~sisp 229 (311)
T PF02638_consen 180 YEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKFSISP 229 (311)
T ss_pred HHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 110001 13457788999999999999998777764
No 82
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=93.84 E-value=0.42 Score=54.41 Aligned_cols=69 Identities=17% Similarity=0.266 Sum_probs=47.8
Q ss_pred cccCCHHHHHHHHHcCCCEEEE-ccccccccCCC------------------CCCCCC-----cChHHHHHHHHHHHHHc
Q 009560 223 NTFITIEDFNFLYRHGINTVRI-PVGWWIAFDPD------------------PPAPFI-----GGSLEALDNALSWAEAY 278 (532)
Q Consensus 223 ~t~ite~d~~~la~~G~N~VRI-pv~ww~~~~~~------------------~~~~~~-----~~~l~~Ld~~v~~a~k~ 278 (532)
.....+..|+.||++|+++|.| ||..+...+.. |...|. .+.+..|+.+|+.+.|+
T Consensus 198 ~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHka 277 (697)
T COG1523 198 LGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKA 277 (697)
T ss_pred ehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHc
Confidence 3334456699999999999996 88654322110 001121 23588999999999999
Q ss_pred CCEEEEEc---CCCCC
Q 009560 279 NIKCIIDL---HAAPG 291 (532)
Q Consensus 279 Gi~VILDl---H~~pG 291 (532)
||.||||+ |.+.|
T Consensus 278 GI~VILDVVfNHTae~ 293 (697)
T COG1523 278 GIEVILDVVFNHTAEG 293 (697)
T ss_pred CCEEEEEEeccCcccc
Confidence 99999995 66543
No 83
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=93.80 E-value=1.2 Score=50.97 Aligned_cols=58 Identities=19% Similarity=0.466 Sum_probs=39.1
Q ss_pred HHHHHHHHcCCCEEEE-cccccc--------------ccCCCC---CC-CCCc-ChHHHHHHHHHHHHHcCCEEEEEc
Q 009560 229 EDFNFLYRHGINTVRI-PVGWWI--------------AFDPDP---PA-PFIG-GSLEALDNALSWAEAYNIKCIIDL 286 (532)
Q Consensus 229 ~d~~~la~~G~N~VRI-pv~ww~--------------~~~~~~---~~-~~~~-~~l~~Ld~~v~~a~k~Gi~VILDl 286 (532)
.-++.|+++|+|+|=| ||.-.. ..++.. ++ .|-. +..+.|+++|+.|.++||+||||+
T Consensus 188 ~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 188 AMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred chhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3589999999999988 542110 011110 00 1111 357899999999999999999995
No 84
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=93.75 E-value=0.79 Score=39.06 Aligned_cols=69 Identities=23% Similarity=0.386 Sum_probs=53.0
Q ss_pred eEEEEEec--CCeEEEEe-cCCeEEEEeCC----CceEEEeecCCCCCceEEEEEcCCCcEEEEe-cCCceEEeccC
Q 009560 102 TFTLWRVS--ESEFQFRT-SQGQFLTCDGE----GCVVSATAKSPSTPETFEIERNNDSRVHIKL-KSGTYLQATLG 170 (532)
Q Consensus 102 ~f~~~~~~--~~~~~lr~-~~~~~v~~~~~----g~~~~a~~~~~~~~e~F~~v~~~~~~v~i~a-~nG~~l~a~~~ 170 (532)
++++..++ ++.|.|++ ..|+++.+.++ |..++.-...-.+.+.|.|+..+++..+|+. ..|+.|.+..+
T Consensus 4 ~W~~~~~~~~~g~Y~i~n~~sg~~L~v~~~~~~~g~~v~~~~~~~~~~Q~W~i~~~~~g~y~I~n~~s~~~Ldv~~~ 80 (105)
T PF14200_consen 4 QWTFTPVGDSDGYYKIRNVNSGKYLDVAGGSTANGTNVQQWTCNGNDNQQWKIEPVGDGYYRIRNKNSGKVLDVAGG 80 (105)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEGCTTCSTTEBEEEEESSSSGGGEEEEEESTTSEEEEEETSTTEEEEEGGG
T ss_pred EEEEEEecCCCCEEEEEECCCCCEEEeCCCCcCCCcEEEEecCCCCcCcEEEEEEecCCeEEEEECCCCcEEEECCC
Confidence 45666665 88899998 78999999754 3356555555588999999999878888887 66899988753
No 85
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=93.63 E-value=1.9 Score=51.83 Aligned_cols=103 Identities=11% Similarity=0.183 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEc---CCCCCCC-----CCCC----CCCCCC-----CCCCCCChhhHHHHHHHHHHHHHH
Q 009560 265 LEALDNALSWAEAYNIKCIIDL---HAAPGSQ-----NGME----HSASRD-----GTTDWPASDYISQTLDVIDFLASR 327 (532)
Q Consensus 265 l~~Ld~~v~~a~k~Gi~VILDl---H~~pGsq-----n~~~----~sg~~~-----g~~~W~~~~~~~~~~~~w~~la~r 327 (532)
.+.|+++|+.|.++||+||||+ |..+.+. .++- ..|... ....-.++..++..++.++..+++
T Consensus 554 i~EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~e 633 (1111)
T TIGR02102 554 IAEFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDE 633 (1111)
T ss_pred HHHHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 6889999999999999999994 4332210 0000 001000 000112355677777888888888
Q ss_pred hCCCCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEeCCC
Q 009560 328 YAKHPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQRI 379 (532)
Q Consensus 328 y~~~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~~~ 379 (532)
|+= ..+- |+++.. .+ ..+++.+..++++.+|+.++ ++.+|
T Consensus 634 y~V-DGFR-fDl~g~-----~d----~~~~~~~~~~l~~~dP~~~l-iGE~W 673 (1111)
T TIGR02102 634 FKV-DGFR-FDMMGD-----HD----AASIEIAYKEAKAINPNIIM-IGEGW 673 (1111)
T ss_pred cCC-cEEE-Eecccc-----CC----HHHHHHHHHHHHHhCcCEEE-EEecc
Confidence 863 2333 777742 12 23556777888999997654 45444
No 86
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=93.60 E-value=5.1 Score=39.45 Aligned_cols=177 Identities=15% Similarity=0.214 Sum_probs=93.5
Q ss_pred ChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHH---HHHHhCCCCcEEEEEe
Q 009560 263 GSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDF---LASRYAKHPALLGIEL 339 (532)
Q Consensus 263 ~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~---la~ry~~~p~v~g~EL 339 (532)
.+++.+.++|..|++.||++|= |- | +|-. ..=.+++.+++|++=++. +|+++ ...+++|+
T Consensus 93 ~aleiM~KaI~LA~dLGIRtIQ-LA---G----YDVY------YE~~d~eT~~rFi~g~~~a~~lA~~a---qV~lAvEi 155 (287)
T COG3623 93 QALEIMEKAIQLAQDLGIRTIQ-LA---G----YDVY------YEEADEETRQRFIEGLKWAVELAARA---QVMLAVEI 155 (287)
T ss_pred HHHHHHHHHHHHHHHhCceeEe-ec---c----ceee------eccCCHHHHHHHHHHHHHHHHHHHhh---ccEEEeee
Confidence 4789999999999999999873 21 1 2211 111246778888766654 45555 46788999
Q ss_pred ccCCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCc--hhhhhccCCCCcEEEEeeecccCCC------cc
Q 009560 340 LNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQRIGNADP--LELYQANIGLHNIVVDLHYYNLFDT------FF 411 (532)
Q Consensus 340 ~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~~~~~~~~--~~~~~~~~~~~nvv~s~H~Y~~f~~------~~ 411 (532)
|.-|..+ -+.+.....+.++.--. .+=+..|+.+. .+...-..-...-+..+|.-..|.- .|
T Consensus 156 MDtpfm~---------sIsk~~~~~~~I~sP~f-~vYPDiGNlsaw~ndv~~El~lG~~~I~aiHlKDTy~vte~~~GqF 225 (287)
T COG3623 156 MDTPFMN---------SISKWLKYDKYINSPWF-TVYPDIGNLSAWNNDVQSELQLGIDKIVAIHLKDTYAVTETSPGQF 225 (287)
T ss_pred cccHHHH---------HHHHHHHHHHHhCCCcE-EecCCcccHhhhhhhHHHHHHcCcCceEEEEecccccccccCCCcc
Confidence 9888643 22344445566665333 33333333110 1221111122345678898776521 12
Q ss_pred ccCChhhhHHHHHHHHHHHHHHHHhcC-CCcEEEeccCcccCCCCCCHHHHHHHHHHHHH
Q 009560 412 VNMSTVDNILFIYKSREAQLQALNNAN-GPLVFIGEWVNEWNVTSGTQKDYQDFGSAQLE 470 (532)
Q Consensus 412 ~~~~~~~~i~~i~~~~~~~~~~~~~~~-g~pv~vGEwG~~~~~~~a~~~~~~~~~~~ql~ 470 (532)
.+.+..+ =|..+.+.+..+.+.+ ..|.+|.=|+-....+.+.....++|+..+++
T Consensus 226 rdvpfGe----G~Vdf~~~f~~lk~~ny~gpfLIEMWse~~ee~~~~i~~A~~~~~~~~~ 281 (287)
T COG3623 226 RDVPFGE----GCVDFEECFKTLKQLNYRGPFLIEMWSETAEEPVAEIIQARDWIEQRMK 281 (287)
T ss_pred ccCCcCC----cchhHHHHHHHHHHhCCCCceehhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 2221111 1223334455555543 45678877775322222233456778777665
No 87
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins PUBMED:2271665. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains PUBMED:9334739.
Probab=93.43 E-value=0.68 Score=41.50 Aligned_cols=79 Identities=15% Similarity=0.168 Sum_probs=58.6
Q ss_pred eEEEEecCCeEEEEeCCCc--eEEEeecCCC-CCceEEEEEcCCCcEEEEe-cCCceEEeccCceEEeCCCCCCCCCCCC
Q 009560 112 EFQFRTSQGQFLTCDGEGC--VVSATAKSPS-TPETFEIERNNDSRVHIKL-KSGTYLQATLGNQLTSDYPGMPGWDDNA 187 (532)
Q Consensus 112 ~~~lr~~~~~~v~~~~~g~--~~~a~~~~~~-~~e~F~~v~~~~~~v~i~a-~nG~~l~a~~~~~v~ad~~~~~~W~~~p 187 (532)
-++||+.|++|+.....++ -|...++-++ +.-.|+++.+.++.||||. .+|||--.. ..+++|+......=++.-
T Consensus 7 ~V~FKg~n~kYLry~~~~~~~~lqf~~ddI~dp~v~~ev~~~~dg~V~ik~~~~nKfWr~s-~~WI~a~s~d~~e~~ssc 85 (139)
T smart00791 7 YVLFKGNNQKYLRYQSIQQYGLLQFSADKILDPLVQFEVFPTYNGLVHIKSNYTNKFWRLS-HYWITADANDPDENKSAC 85 (139)
T ss_pred EEEEEcCCCceEEEEeecccceeEecccccCCcceeEEEEEcCCCcEEEEecCCCceEccC-CCEEEecCCCCccCCCcc
Confidence 4899999999998876554 5777777666 5778999998889999999 889998655 777888865432212234
Q ss_pred ccee
Q 009560 188 ATFE 191 (532)
Q Consensus 188 s~f~ 191 (532)
++|+
T Consensus 86 TLF~ 89 (139)
T smart00791 86 TLFR 89 (139)
T ss_pred cEEe
Confidence 5665
No 88
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=93.28 E-value=0.45 Score=49.25 Aligned_cols=170 Identities=14% Similarity=0.141 Sum_probs=89.0
Q ss_pred HHHHHHHHHcCCCEEEEccccccc----c---------------CCC------------CCCCCC----cChHHHHHHHH
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIA----F---------------DPD------------PPAPFI----GGSLEALDNAL 272 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~----~---------------~~~------------~~~~~~----~~~l~~Ld~~v 272 (532)
|+.|+.||=.|+|..=-+++-... . .|. =++|+. +...+.=++++
T Consensus 22 EreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq~kIl 101 (333)
T PF05089_consen 22 EREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQKKIL 101 (333)
T ss_dssp HHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHHHHHH
Confidence 899999999999988766643110 0 010 012332 23455567799
Q ss_pred HHHHHcCCEEEEEcCC--CC--------CC----CCCCCCCCCCCCCCCCC---ChhhHHHHHHHHHHHHHHhCCCCcEE
Q 009560 273 SWAEAYNIKCIIDLHA--AP--------GS----QNGMEHSASRDGTTDWP---ASDYISQTLDVIDFLASRYAKHPALL 335 (532)
Q Consensus 273 ~~a~k~Gi~VILDlH~--~p--------Gs----qn~~~~sg~~~g~~~W~---~~~~~~~~~~~w~~la~ry~~~p~v~ 335 (532)
+..++.||..||--.. .| +. +..|... ....|. ++-..+....+.+...+.|+ ..++.
T Consensus 102 ~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f----~~~~~L~P~dplF~~i~~~F~~~q~~~yG-~~~~Y 176 (333)
T PF05089_consen 102 DRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGF----CRPYFLDPTDPLFAEIAKLFYEEQIKLYG-TDHIY 176 (333)
T ss_dssp HHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTE----E--EEE-SS--HHHHHHHHHHHHHHHHH----SEE
T ss_pred HHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCC----CCCceeCCCCchHHHHHHHHHHHHHHhcC-CCcee
Confidence 9999999999995331 01 10 0001000 011122 34566677788888899998 78899
Q ss_pred EEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEeC------CCCCCCc-hhhhhccCCCCcEEEEee
Q 009560 336 GIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQ------RIGNADP-LELYQANIGLHNIVVDLH 402 (532)
Q Consensus 336 g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~------~~~~~~~-~~~~~~~~~~~nvv~s~H 402 (532)
+.|++||=..+....+.+.+..++++++++++||++.=++.+ .++..++ +.++.-.+.++=+|+|..
T Consensus 177 ~~D~FnE~~p~~~~~~~l~~~s~~v~~am~~~dp~AvWvmQgWlF~~~~fW~~~~~~a~L~~Vp~~~mliLDL~ 250 (333)
T PF05089_consen 177 AADPFNEGGPPSGDPEYLANVSKAVYKAMQAADPDAVWVMQGWLFYYDPFWTPNPIKALLSGVPKGRMLILDLF 250 (333)
T ss_dssp E--TTTTS---TTS---HHHHHHHHHHHHHHH-TT-EEEEEE--------BTTBS-HHHHTT-SGGGEEEEETT
T ss_pred CCCccCCCCCCCCchHHHHHHHHHHHHHHHhhCCCcEEEEcccccccccccCcchHHHHHcCCCCCCeEEEEcc
Confidence 999999965554456679999999999999999997655543 1222232 455554344555667654
No 89
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=93.24 E-value=1.4 Score=39.62 Aligned_cols=105 Identities=17% Similarity=0.230 Sum_probs=62.3
Q ss_pred HHHHHHHHHcCCCEEEEccc---cccccCCC--CCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCC---------CCC-
Q 009560 228 IEDFNFLYRHGINTVRIPVG---WWIAFDPD--PPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAA---------PGS- 292 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~---ww~~~~~~--~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~---------pGs- 292 (532)
++-++.+++.|+|+|-|-.. -+.+.+.. +..|+.. .+.|.++|+.|++.||+|++-+-.. |-.
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~--~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPeW~ 80 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK--RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPEWF 80 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC--cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCcee
Confidence 56678899999999999442 12333222 1123332 5889999999999999999843211 110
Q ss_pred ---CCCCCCCCCCCCCCCCC----ChhhHHHHHHHHHHHHHHhCCCCcEE
Q 009560 293 ---QNGMEHSASRDGTTDWP----ASDYISQTLDVIDFLASRYAKHPALL 335 (532)
Q Consensus 293 ---qn~~~~sg~~~g~~~W~----~~~~~~~~~~~w~~la~ry~~~p~v~ 335 (532)
.+|-...+.......|. +..+++...+.++.+.++| +-..++
T Consensus 81 ~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y-~~DGiF 129 (132)
T PF14871_consen 81 VRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY-DVDGIF 129 (132)
T ss_pred eECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC-CCCEEE
Confidence 01110001111222243 4567788889999999999 334443
No 90
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=92.59 E-value=3.6 Score=42.33 Aligned_cols=141 Identities=17% Similarity=0.236 Sum_probs=85.8
Q ss_pred HHHHHHHHHcCCCEEEEccc----cccccC--CC------------CCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVG----WWIAFD--PD------------PPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAA 289 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~----ww~~~~--~~------------~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~ 289 (532)
++.++.|+..++|.+-+.+. |..-.. |. +.+.| .-+.+.+++++|+++||.||..+-.
T Consensus 19 k~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~y---T~~di~elv~yA~~rgI~viPEiD~- 94 (303)
T cd02742 19 KRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFY---TYAQLKDIIEYAAARGIEVIPEIDM- 94 (303)
T ss_pred HHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeE---CHHHHHHHHHHHHHcCCEEEEeccc-
Confidence 57788899999999998875 321111 10 01122 5789999999999999999998753
Q ss_pred CCCCCCC------------CCC--CCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCCcccHHH
Q 009560 290 PGSQNGM------------EHS--ASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVPLDILVP 355 (532)
Q Consensus 290 pGsqn~~------------~~s--g~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~~ 355 (532)
||....+ ... ....+.....+++..+-..++++++++-|.+.--.+|-| |........+.+..
T Consensus 95 PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf~~~~iHiGgD---E~~~~~~~~~l~~~ 171 (303)
T cd02742 95 PGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAELFPDRYLHIGGD---EAHFKQDRKHLMSQ 171 (303)
T ss_pred hHHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHHhCCCCeEEecce---ecCCCCCHHHHHHH
Confidence 5521110 000 000112233456788888899999999885432233322 22111123455788
Q ss_pred HHHHHHHHHHhhCCCcEEEEe
Q 009560 356 YYKQGYQIVRKYSPTAYVIVC 376 (532)
Q Consensus 356 ~~~~~~~aIR~~~~~~~Viv~ 376 (532)
|.+++.+.|++.+. .+++=+
T Consensus 172 f~~~~~~~v~~~g~-~~~~W~ 191 (303)
T cd02742 172 FIQRVLDIVKKKGK-KVIVWQ 191 (303)
T ss_pred HHHHHHHHHHHcCC-eEEEec
Confidence 88999999998874 344333
No 91
>PLN02877 alpha-amylase/limit dextrinase
Probab=92.42 E-value=2.6 Score=49.77 Aligned_cols=106 Identities=7% Similarity=0.071 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHHcCCEEEEEc---CCCCCCC----CCCCC-----------CCCCCCCCCCC-----ChhhHHHHHHH
Q 009560 264 SLEALDNALSWAEAYNIKCIIDL---HAAPGSQ----NGMEH-----------SASRDGTTDWP-----ASDYISQTLDV 320 (532)
Q Consensus 264 ~l~~Ld~~v~~a~k~Gi~VILDl---H~~pGsq----n~~~~-----------sg~~~g~~~W~-----~~~~~~~~~~~ 320 (532)
....++++|+.|.++||+||||+ |...+.. +.++. .|.......+. ++..++..++.
T Consensus 464 RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDs 543 (970)
T PLN02877 464 RIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDD 543 (970)
T ss_pred hHHHHHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHH
Confidence 36679999999999999999994 5432111 11110 01000001111 13345666788
Q ss_pred HHHHHHHhCCCCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhh-------CCCcEEEEeCCCC
Q 009560 321 IDFLASRYAKHPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKY-------SPTAYVIVCQRIG 380 (532)
Q Consensus 321 w~~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~-------~~~~~Viv~~~~~ 380 (532)
.+..++.|+= ...- |+|+..-. .+.+ +++..+++++ +...+++++.+|.
T Consensus 544 l~yW~~ey~V-DGFR-FDlmg~i~-----~~tm----~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~ 599 (970)
T PLN02877 544 LLNWAVNYKV-DGFR-FDLMGHLM-----KRTM----VRAKDALQSLTLERDGVDGSSIYLYGEGWD 599 (970)
T ss_pred HHHHHHHhCC-CEEE-EEcccccc-----HHHH----HHHHHHHHHHhhhhcccCCCceEEEEeCCC
Confidence 8888888853 3333 78876642 2223 3334444444 4345566777773
No 92
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=92.32 E-value=1.4 Score=49.64 Aligned_cols=143 Identities=20% Similarity=0.266 Sum_probs=78.2
Q ss_pred CHHHHHHHHHcCCCEEEE-cccccc-----ccCCC----CCCCCCcChHHHHHHHHHHHHHcCCEEEEEcC---CCCCCC
Q 009560 227 TIEDFNFLYRHGINTVRI-PVGWWI-----AFDPD----PPAPFIGGSLEALDNALSWAEAYNIKCIIDLH---AAPGSQ 293 (532)
Q Consensus 227 te~d~~~la~~G~N~VRI-pv~ww~-----~~~~~----~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH---~~pGsq 293 (532)
+++-+..||++|+++|=| ||.-.. ..++. |...| +.=+.|.++|+.|.++||.||||.- ..| ..
T Consensus 167 a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sry--GtPedfk~fVD~aH~~GIgViLD~V~~HF~~-d~ 243 (628)
T COG0296 167 AIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRY--GTPEDFKALVDAAHQAGIGVILDWVPNHFPP-DG 243 (628)
T ss_pred HHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccC--CCHHHHHHHHHHHHHcCCEEEEEecCCcCCC-Cc
Confidence 478889999999999997 553110 11111 11111 4678899999999999999999953 222 11
Q ss_pred CC---CCCCC------CCC-CCCCCCC-------hhhHHHHHHHHHHHHHHhC---------------CCCcEEEEEecc
Q 009560 294 NG---MEHSA------SRD-GTTDWPA-------SDYISQTLDVIDFLASRYA---------------KHPALLGIELLN 341 (532)
Q Consensus 294 n~---~~~sg------~~~-g~~~W~~-------~~~~~~~~~~w~~la~ry~---------------~~p~v~g~EL~N 341 (532)
|+ ++..- .+. -...|.+ ++.+.-+++-..+-.++|. +...--+..+.|
T Consensus 244 ~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n 323 (628)
T COG0296 244 NYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPN 323 (628)
T ss_pred chhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccchhhhhhccccc
Confidence 11 11110 010 1234543 2223333322223333332 211112234566
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEE
Q 009560 342 EPSAATVPLDILVPYYKQGYQIVRKYSPTAYVI 374 (532)
Q Consensus 342 EP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Vi 374 (532)
|..+. ..-...++.+.+-+.|+...|..+.|
T Consensus 324 ~~ggr--~n~~a~efl~~~n~~i~~~~pg~~~i 354 (628)
T COG0296 324 EYGGR--ENLEAAEFLRNLNSLIHEEEPGAMTI 354 (628)
T ss_pred ccCCc--ccHHHHHHhhhhhhhhcccCCCceee
Confidence 66442 23456788899999999988876443
No 93
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=92.21 E-value=2.5 Score=51.60 Aligned_cols=137 Identities=17% Similarity=0.287 Sum_probs=75.3
Q ss_pred HHHHHHHHHcCCCEEEE-ccccccc--------------cCCCC---CC-CCCcChHHHHHHHHHHHHHcCCEEEEEc--
Q 009560 228 IEDFNFLYRHGINTVRI-PVGWWIA--------------FDPDP---PA-PFIGGSLEALDNALSWAEAYNIKCIIDL-- 286 (532)
Q Consensus 228 e~d~~~la~~G~N~VRI-pv~ww~~--------------~~~~~---~~-~~~~~~l~~Ld~~v~~a~k~Gi~VILDl-- 286 (532)
++.++.|+++|+|+|=| ||.-..- .++.. ++ .|-....+.++++|+.|.++||+||||+
T Consensus 190 ~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~ 269 (1221)
T PRK14510 190 PEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVF 269 (1221)
T ss_pred chhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 46788999999999987 5532110 01100 00 1111267899999999999999999994
Q ss_pred -CCCCCCCCC-------CCCC-------CCCCCCC---------CCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccC
Q 009560 287 -HAAPGSQNG-------MEHS-------ASRDGTT---------DWPASDYISQTLDVIDFLASRYAKHPALLGIELLNE 342 (532)
Q Consensus 287 -H~~pGsqn~-------~~~s-------g~~~g~~---------~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NE 342 (532)
|...+...+ .+.+ +...... ...++..++..++..+..++ |+ -...- ||+..+
T Consensus 270 NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~lr~Wv~-~g-VDGfR-fDla~~ 346 (1221)
T PRK14510 270 NHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDVLRSWAK-RG-VDGFR-LDLADE 346 (1221)
T ss_pred ccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHHHHHHHH-hC-CCEEE-Eechhh
Confidence 544332110 0000 0000001 11134555555666666666 53 33333 666655
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHhhCCCcEE
Q 009560 343 PSAATVPLDILVPYYKQGYQIVRKYSPTAYV 373 (532)
Q Consensus 343 P~~~~~~~~~l~~~~~~~~~aIR~~~~~~~V 373 (532)
-... + ..+.+.....++++.++.++
T Consensus 347 l~r~--~----~~f~~~~~~~l~ai~~d~~l 371 (1221)
T PRK14510 347 LARE--P----DGFIDEFRQFLKAMDQDPVL 371 (1221)
T ss_pred hccC--c----cchHHHHHHHHHHhCCCcCc
Confidence 4211 1 23556677788888887654
No 94
>KOG3962 consensus Predicted actin-bundling protein [Cytoskeleton]
Probab=91.68 E-value=0.24 Score=47.80 Aligned_cols=71 Identities=23% Similarity=0.353 Sum_probs=56.0
Q ss_pred ccccceEEEEEecCCeEEEEecCCCceeEEcCCCCCCcceEEEEEecCCeEEEEecCCeEEEEeCCCceEEEeecC
Q 009560 63 MLDGTQVQIKSVTLEKYVCAESGGGTDVSVTRDVASSWETFTLWRVSESEFQFRTSQGQFLTCDGEGCVVSATAKS 138 (532)
Q Consensus 63 ~~~g~~v~~~s~~~~~yv~ae~gg~~~l~anr~~~~~wE~f~~~~~~~~~~~lr~~~~~~v~~~~~g~~~~a~~~~ 138 (532)
++| ..|.||| --||||+.+..| .|++-+++++.-|+|. ..+-++.++|-+++++|..++..+-.-+|.++.
T Consensus 91 i~d-srIaLKs-GyGKYlsinsdg--lvvg~qeAvG~~EQw~-~vFq~~r~a~~as~s~~~~~~e~~d~~va~kt~ 161 (246)
T KOG3962|consen 91 ISD-SRIALKS-GYGKYLSINSDG--LVVGRQEAVGSREQWE-PVFQEGRMALLASNSCFIRCNEAGDAEVASKTA 161 (246)
T ss_pred ccC-ceEEecc-cccceeeecCCc--cEEEehhhcCcHhhch-hhhhccceEEeeccceeEEechhhchhhhcccC
Confidence 344 8999998 799999999986 8999999999999998 444477788888999999886555334444443
No 95
>PRK03705 glycogen debranching enzyme; Provisional
Probab=91.35 E-value=1.7 Score=49.61 Aligned_cols=113 Identities=15% Similarity=0.303 Sum_probs=63.7
Q ss_pred HHHHHHHHcCCCEEEE-cccccc--------------ccCCC----CCCCCCc---ChHHHHHHHHHHHHHcCCEEEEEc
Q 009560 229 EDFNFLYRHGINTVRI-PVGWWI--------------AFDPD----PPAPFIG---GSLEALDNALSWAEAYNIKCIIDL 286 (532)
Q Consensus 229 ~d~~~la~~G~N~VRI-pv~ww~--------------~~~~~----~~~~~~~---~~l~~Ld~~v~~a~k~Gi~VILDl 286 (532)
.-++.|+++|+|+|=| ||.-.. ..++. +...|-. ..++.|+++|+.|.++||+||||+
T Consensus 183 ~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 183 VMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred cchHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 3599999999999987 552110 00110 0001111 136789999999999999999995
Q ss_pred ---CCCCCCCCCC-------CC--------CCCCC------CCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccC
Q 009560 287 ---HAAPGSQNGM-------EH--------SASRD------GTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNE 342 (532)
Q Consensus 287 ---H~~pGsqn~~-------~~--------sg~~~------g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NE 342 (532)
|...+...+. +. .+... ....+.++..++..++..+..+++|+= ..+- |+++.+
T Consensus 263 V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~gV-DGFR-fD~a~~ 340 (658)
T PRK03705 263 VFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCHV-DGFR-FDLATV 340 (658)
T ss_pred cccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhCC-CEEE-EEcHhh
Confidence 4433211110 00 00000 011123466777788888888888753 2333 666665
Q ss_pred C
Q 009560 343 P 343 (532)
Q Consensus 343 P 343 (532)
-
T Consensus 341 l 341 (658)
T PRK03705 341 L 341 (658)
T ss_pred h
Confidence 4
No 96
>PRK14706 glycogen branching enzyme; Provisional
Probab=91.28 E-value=7.1 Score=44.50 Aligned_cols=145 Identities=14% Similarity=0.199 Sum_probs=81.7
Q ss_pred HHHHHHHHHcCCCEEEE-cccc------ccccCCCCCCCCCc--ChHHHHHHHHHHHHHcCCEEEEEc---CCCCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRI-PVGW------WIAFDPDPPAPFIG--GSLEALDNALSWAEAYNIKCIIDL---HAAPGSQNG 295 (532)
Q Consensus 228 e~d~~~la~~G~N~VRI-pv~w------w~~~~~~~~~~~~~--~~l~~Ld~~v~~a~k~Gi~VILDl---H~~pGsqn~ 295 (532)
++-++.|+++|+|+|=| ||.- |- .++.......+ +..+.|+++|+.|.++||+||||+ |..+. .++
T Consensus 171 ~~l~~ylk~lG~t~velmPv~e~~~~~~wG-Y~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~-~~~ 248 (639)
T PRK14706 171 HRLGEYVTYMGYTHVELLGVMEHPFDGSWG-YQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTD-ESG 248 (639)
T ss_pred HHHHHHHHHcCCCEEEccchhcCCCCCCCC-cCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcc-hhh
Confidence 44568899999999987 5421 11 11110000011 368999999999999999999995 43221 111
Q ss_pred ---CC------CCCCCCC-CCCCC-------ChhhHHHHHHHHHHHHHHhCCCCcEEEEEecc------------CCCCC
Q 009560 296 ---ME------HSASRDG-TTDWP-------ASDYISQTLDVIDFLASRYAKHPALLGIELLN------------EPSAA 346 (532)
Q Consensus 296 ---~~------~sg~~~g-~~~W~-------~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~N------------EP~~~ 346 (532)
++ +.....+ ...|. +++.++..++..+...++|.=+. +- ++..- .|...
T Consensus 249 l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG-~R-~Dav~~~ly~d~~~~~~~~~~~ 326 (639)
T PRK14706 249 LAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDG-LR-VDAVASMLYLDFSRTEWVPNIH 326 (639)
T ss_pred hhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCe-EE-EeeehheeecccCccccccccc
Confidence 11 0000011 12343 46777777788888887764221 11 11110 11110
Q ss_pred -CCCcccHHHHHHHHHHHHHhhCCCcEEEEe
Q 009560 347 -TVPLDILVPYYKQGYQIVRKYSPTAYVIVC 376 (532)
Q Consensus 347 -~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~ 376 (532)
+.....-..+++.+-.+||+..|+.++|-+
T Consensus 327 gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE 357 (639)
T PRK14706 327 GGRENLEAIAFLKRLNEVTHHMAPGCMMIAE 357 (639)
T ss_pred CCcccHHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 111233567889999999999998877765
No 97
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=91.16 E-value=7 Score=34.73 Aligned_cols=92 Identities=16% Similarity=0.108 Sum_probs=67.0
Q ss_pred CeEEEEecCCCceeEEcCCCCCCcceEEEEEecCCeEEEEe-cCCeEEEEeCCCceEEEeecCCCCCceEEEEEcCCCcE
Q 009560 77 EKYVCAESGGGTDVSVTRDVASSWETFTLWRVSESEFQFRT-SQGQFLTCDGEGCVVSATAKSPSTPETFEIERNNDSRV 155 (532)
Q Consensus 77 ~~yv~ae~gg~~~l~anr~~~~~wE~f~~~~~~~~~~~lr~-~~~~~v~~~~~g~~~~a~~~~~~~~e~F~~v~~~~~~v 155 (532)
|.|+-....| .|..-++.-+..-.|++..++.+.|.+|+ ..++|+|.+..|- |-+.. .+..-+.|.-....++-.
T Consensus 8 ~~~L~I~~dG--~V~Gt~~~~~~~s~l~~~s~~~g~v~i~~v~s~~YLCmn~~G~-ly~s~-~~~~dC~F~E~~~~n~Y~ 83 (123)
T cd00058 8 GFHLQILPDG--TVDGTRDDSSSYTILERIAVAVGVVSIKGVASCRYLCMNKCGK-LYGSK-GFTEECLFREELLENNYN 83 (123)
T ss_pred CeEEEEcCCC--cEecccCCCCCCceEEEEECCCCEEEEEEcccceEEEECCCCC-EEECC-CCCCCCEEEEEEccCCcE
Confidence 7788777654 56666666667788888888899999999 7999999998884 77766 889999997554433444
Q ss_pred EEEe-c--CCceEEeccCce
Q 009560 156 HIKL-K--SGTYLQATLGNQ 172 (532)
Q Consensus 156 ~i~a-~--nG~~l~a~~~~~ 172 (532)
.+.. . .+.||..+..|.
T Consensus 84 ~y~S~~~~~~~ylal~~~G~ 103 (123)
T cd00058 84 TYASAKYRRRWYLALNKKGR 103 (123)
T ss_pred EEEEcccCCCcEEEECCCCC
Confidence 4433 2 478887766554
No 98
>PF07468 Agglutinin: Agglutinin; InterPro: IPR008998 Agglutinins are sugar-specific lectins that can agglutinate erythrocytes and other cell types. Lectins occur widely in plants, as well as some microorganisms and animal []. Agglutinin from Amaranthus caudatus (amaranthin) is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it can agglutinate A, B and O red blood cells, and has a carbohydrate-binding site that is specific for the methyl-glycoside of the T-antigen found linked to serine or threonine residues of cell surface glycoproteins []. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains []. Lectin B chains from ricin and related toxins also contain beta-trefoil domain, however they are not related to agglutinin, showing little sequence similarity [].; PDB: 1JLY_B 1JLX_B.
Probab=91.08 E-value=1.5 Score=40.22 Aligned_cols=66 Identities=18% Similarity=0.281 Sum_probs=48.6
Q ss_pred EEEEecCCeEEEEeC--CCc--eEEEeecCCC-CCceEEEEE--cCCCcEEEEe-cCCceEEeccCc--eEEeCCC
Q 009560 113 FQFRTSQGQFLTCDG--EGC--VVSATAKSPS-TPETFEIER--NNDSRVHIKL-KSGTYLQATLGN--QLTSDYP 178 (532)
Q Consensus 113 ~~lr~~~~~~v~~~~--~g~--~~~a~~~~~~-~~e~F~~v~--~~~~~v~i~a-~nG~~l~a~~~~--~v~ad~~ 178 (532)
+.|+..|++|+++.. ... -|...++-++ +.-.|+++. ..++.||||. .+|||--..+++ ++.|+..
T Consensus 8 V~fkg~N~kYLry~~e~~~~~~~LqF~~edi~dP~v~fev~~~~~~dG~V~Ir~~y~nKfWrr~s~n~~WI~ada~ 83 (153)
T PF07468_consen 8 VAFKGDNGKYLRYRTEDIQQYGYLQFSGEDIGDPYVKFEVEPSKTHDGLVHIRCCYNNKFWRRSSPNDYWIWADAD 83 (153)
T ss_dssp EEEETTTS-EEEEEESSCTTCCEEEEEESSTT-CCG-EEEEE-SSTTT-EEEEETTTTEEEEESCCC--BEEEEES
T ss_pred EEEEcCCCcEEEEEecccccceeEEecCCcCCCCceeEEEEEcccCCCeEEEEeccCCceeEeCCCCCcEEEecCC
Confidence 577779999999976 332 4777766665 689999999 5588999999 899999876666 7777743
No 99
>PLN00196 alpha-amylase; Provisional
Probab=91.02 E-value=0.79 Score=49.55 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=41.5
Q ss_pred HHHHHHHHHcCCCEEEEccccccc----cCCCCCCCCCc---ChHHHHHHHHHHHHHcCCEEEEEc
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIA----FDPDPPAPFIG---GSLEALDNALSWAEAYNIKCIIDL 286 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~----~~~~~~~~~~~---~~l~~Ld~~v~~a~k~Gi~VILDl 286 (532)
.+.+..|+++|+++|=||=.+... .++......++ +..+.|+++|+.|+++||+||+|.
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 577899999999999997533211 01111011121 467899999999999999999995
No 100
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=90.97 E-value=0.63 Score=51.92 Aligned_cols=59 Identities=19% Similarity=0.311 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCC-----CCCCc--ChHHHHHHHHHHHHHcCCEEEEEc
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPP-----APFIG--GSLEALDNALSWAEAYNIKCIIDL 286 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~-----~~~~~--~~l~~Ld~~v~~a~k~Gi~VILDl 286 (532)
.+.++.|+++|+++|=|.=-+.......+. ...++ +..+.|+++|+.|+++||+||||+
T Consensus 30 ~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 30 IEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 466899999999999884322111000010 01112 478999999999999999999995
No 101
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=90.95 E-value=5.4 Score=41.46 Aligned_cols=144 Identities=12% Similarity=0.133 Sum_probs=86.6
Q ss_pred HHHHHHHHHcCCCEEEEcccc-ccccCCCCCC--------------------CCC-cC--hHHHHHHHHHHHHHcCCEEE
Q 009560 228 IEDFNFLYRHGINTVRIPVGW-WIAFDPDPPA--------------------PFI-GG--SLEALDNALSWAEAYNIKCI 283 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~w-w~~~~~~~~~--------------------~~~-~~--~l~~Ld~~v~~a~k~Gi~VI 283 (532)
++-++.|+..++|.+-+.+.= |.+.-...+. ... .+ ..+.++++++.|+++||.||
T Consensus 20 k~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~rgI~vI 99 (326)
T cd06564 20 KDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAKDRGVNII 99 (326)
T ss_pred HHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHHHcCCeEe
Confidence 677888999999999886631 1111000000 000 11 57899999999999999999
Q ss_pred EEcCCCCCCCCCCC-----------CCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCC-CCc-EEEE-EeccCCCCCCCC
Q 009560 284 IDLHAAPGSQNGME-----------HSASRDGTTDWPASDYISQTLDVIDFLASRYAK-HPA-LLGI-ELLNEPSAATVP 349 (532)
Q Consensus 284 LDlH~~pGsqn~~~-----------~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~-~p~-v~g~-EL~NEP~~~~~~ 349 (532)
..+- .||....+- ......+.....+++..+-..++++++++-|.. .+. .+|- |..+. ...
T Consensus 100 PEID-~PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f~~~~~~~HiGgDE~~~~----~~~ 174 (326)
T cd06564 100 PEID-SPGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDGFNPKSDTVHIGADEYAGD----AGY 174 (326)
T ss_pred ccCC-CcHHHHHHHHhhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHHHhcCCCCCEEEecccccccc----Ccc
Confidence 8775 355321100 001111222344677888888999999998873 232 2222 22222 224
Q ss_pred cccHHHHHHHHHHHHHhhCCCcEEEEeC
Q 009560 350 LDILVPYYKQGYQIVRKYSPTAYVIVCQ 377 (532)
Q Consensus 350 ~~~l~~~~~~~~~aIR~~~~~~~Viv~~ 377 (532)
.+.+..|.+++.+.|++.+. ++++-++
T Consensus 175 ~~~~~~f~~~~~~~v~~~gk-~~~~W~d 201 (326)
T cd06564 175 AEAFRAYVNDLAKYVKDKGK-TPRVWGD 201 (326)
T ss_pred HHHHHHHHHHHHHHHHHcCC-eEEEeCC
Confidence 56788999999999999864 3444343
No 102
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=90.31 E-value=19 Score=38.07 Aligned_cols=234 Identities=18% Similarity=0.227 Sum_probs=117.0
Q ss_pred HcCCCEEEEccccccccCC-----CCCCCCC-------cChHHHHHHHHHHHHH---cCCEEEEEcCCCCCCCCCCCCCC
Q 009560 236 RHGINTVRIPVGWWIAFDP-----DPPAPFI-------GGSLEALDNALSWAEA---YNIKCIIDLHAAPGSQNGMEHSA 300 (532)
Q Consensus 236 ~~G~N~VRIpv~ww~~~~~-----~~~~~~~-------~~~l~~Ld~~v~~a~k---~Gi~VILDlH~~pGsqn~~~~sg 300 (532)
-+|.|..|+|+.--.+... +.++.|. ++.++.---.|+.|.+ .+|+..-....+||.- ...|
T Consensus 135 Gl~y~~gRVPiAS~DFS~r~YsYdDv~~Df~l~nF~L~~ED~q~KIP~ik~A~~~~~~~lklfAsPWsaPgWl---Kttg 211 (518)
T KOG2566|consen 135 GLGYNIGRVPIASCDFSTREYSYDDVPDDFQLKNFSLPEEDLKLKIPFIKKAQKYNQGNLKLFASPWSAPGWL---KTTG 211 (518)
T ss_pred CccceeeeeeecccccccceeeccCCcccccccccCCchhhheeecHHHHHHHHhcCCCceEEecCCCCCcee---eecc
Confidence 3678899999954222111 1111111 1222222224444444 4577777777777632 1112
Q ss_pred CCCCCCCCC---ChhhHHHHHHHHHHHHHHhCCCC-cEEEEEeccCCCCCC----------CCcccHHHHHHHHHH-HHH
Q 009560 301 SRDGTTDWP---ASDYISQTLDVIDFLASRYAKHP-ALLGIELLNEPSAAT----------VPLDILVPYYKQGYQ-IVR 365 (532)
Q Consensus 301 ~~~g~~~W~---~~~~~~~~~~~w~~la~ry~~~p-~v~g~EL~NEP~~~~----------~~~~~l~~~~~~~~~-aIR 365 (532)
...|...-. .+.+-+.++++.-.+.+.|..+. ..+|...-|||..+. .+.+.-+.|+++-+. ++.
T Consensus 212 ~m~G~G~l~g~~~d~yhqtya~YfvkFleaY~~~gi~FWglt~qNEPstG~d~~~k~Qtl~ftae~qRdFik~dLGPaLa 291 (518)
T KOG2566|consen 212 RMNGKGALLGDPGDIYHQTYARYFVKFLEAYAKHGIQFWGLTTQNEPSTGSDKKWKWQTLGFTAETQRDFIKKDLGPALA 291 (518)
T ss_pred cccccccccCCCCchhHHHHHHHHHHHHHHHHhcCceEEeecccCCCCcCcccCCceeecccCHHHHHHHHHHhcchhhh
Confidence 111211111 23566777777777888887664 678888999998641 245566667666443 333
Q ss_pred hh--CCC-cEEEEeCCCCCCCchhhhhc----cCC-CCcEEEEeeecccCCCccccCChhhhHHHHHHHHHHHHHHHHhc
Q 009560 366 KY--SPT-AYVIVCQRIGNADPLELYQA----NIG-LHNIVVDLHYYNLFDTFFVNMSTVDNILFIYKSREAQLQALNNA 437 (532)
Q Consensus 366 ~~--~~~-~~Viv~~~~~~~~~~~~~~~----~~~-~~nvv~s~H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~ 437 (532)
+. ..+ +++|+.+.-++ ...|.+. +.. .----+.+|.|..|... ..+.+ . ..+
T Consensus 292 ~s~~~knvkllilDD~Rg~--LP~WadtvlnDpeAakYv~GIaVHwY~df~~p------a~~L~-----------e-Th~ 351 (518)
T KOG2566|consen 292 SSKTTKNVKLLILDDQRGL--LPHWADTVLNDPEAAKYVHGIAVHWYQDFLEP------AKHLD-----------E-THR 351 (518)
T ss_pred cCCcCCceEEEEecCCccC--CCccchhhccChhhhhhccceEEEeeccccCh------hhhhh-----------h-HHh
Confidence 32 233 34444543221 1112111 111 11123889999875321 11111 0 111
Q ss_pred CCCc--EEEeccCcccCC----CCCCHHHHHHHHHHHHHHHHhCCCcEEEEcccCC---CCCCc
Q 009560 438 NGPL--VFIGEWVNEWNV----TSGTQKDYQDFGSAQLEVYNAASFGWAYWTLKND---RKHWD 492 (532)
Q Consensus 438 ~g~p--v~vGEwG~~~~~----~~a~~~~~~~~~~~ql~~~~~~~~Gw~yW~~k~e---~~~Ws 492 (532)
+.|- ++-.|=.+.+.. .-.+-+...+|..+.++-+.-.--||.=|.+--+ +..|-
T Consensus 352 ~hP~~fifgTEAc~Gy~~~d~v~~Gswdrae~yasdii~dlnn~vtGWtdwNl~Ld~~GGP~wv 415 (518)
T KOG2566|consen 352 KHPNTFIFGTEACAGYKSKDGVDLGSWDRAEQYASDIITDLNNHVTGWTDWNLILDAQGGPNWV 415 (518)
T ss_pred hCCCeEEEeehhccccccccCccccchhhHHHHHHHHHHhhhhhccceeeeeeEecCcCCchhH
Confidence 1222 334454433321 1122334567888888877777789999977654 45554
No 103
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=90.05 E-value=7.4 Score=40.00 Aligned_cols=144 Identities=13% Similarity=0.096 Sum_probs=86.1
Q ss_pred HHHHHHHHHcCCCEEEEccccccc-cCCCC-----CCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCC----C
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIA-FDPDP-----PAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGM----E 297 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~-~~~~~-----~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~----~ 297 (532)
++-++.|+..|+|.+-+.+.= .+ .+..| .+.| .-+.+.++++.|+++||.||..+-. ||....+ .
T Consensus 20 k~~id~ma~~k~N~l~lhl~D-~f~~~~~p~~~~~~~~y---T~~ei~ei~~yA~~~gI~vIPeid~-pGH~~~~l~~~~ 94 (301)
T cd06565 20 KKLLRLLALLGANGLLLYYED-TFPYEGEPEVGRMRGAY---TKEEIREIDDYAAELGIEVIPLIQT-LGHLEFILKHPE 94 (301)
T ss_pred HHHHHHHHHcCCCEEEEEEec-ceecCCCcccccCCCCc---CHHHHHHHHHHHHHcCCEEEecCCC-HHHHHHHHhCcc
Confidence 677889999999999886631 11 11111 1122 6789999999999999999998654 5521110 0
Q ss_pred CCCCC-----CCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccC-CCCC-------CCCcccHHHHHHHHHHHH
Q 009560 298 HSASR-----DGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNE-PSAA-------TVPLDILVPYYKQGYQIV 364 (532)
Q Consensus 298 ~sg~~-----~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NE-P~~~-------~~~~~~l~~~~~~~~~aI 364 (532)
....+ .+...-.+++..+-..++++++++-|...--.+|-|=..+ ..+. ....+.+..+.+++.+.|
T Consensus 95 ~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~f~s~~~HIG~DE~~~~g~~~~~~~~~~~~~~~l~~~~~~~v~~~v 174 (301)
T cd06565 95 FRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLELHPSKYIHIGMDEAYDLGRGRSLRKHGNLGRGELYLEHLKKVLKII 174 (301)
T ss_pred cccccccCCCCCccCCCChhHHHHHHHHHHHHHHhCCCCeEEECCCcccccCCCHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 00000 1122233567788888899999988874222233221111 1110 012345788999999999
Q ss_pred HhhCCCcEEEEeC
Q 009560 365 RKYSPTAYVIVCQ 377 (532)
Q Consensus 365 R~~~~~~~Viv~~ 377 (532)
++.++ ++++-++
T Consensus 175 ~~~g~-~~~~W~D 186 (301)
T cd06565 175 KKRGP-KPMMWDD 186 (301)
T ss_pred HHcCC-EEEEEhH
Confidence 99987 4555444
No 104
>PLN02361 alpha-amylase
Probab=90.02 E-value=0.92 Score=48.60 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCC-----Cc--ChHHHHHHHHHHHHHcCCEEEEEc
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF-----IG--GSLEALDNALSWAEAYNIKCIIDL 286 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~-----~~--~~l~~Ld~~v~~a~k~Gi~VILDl 286 (532)
++.++.|+++|+++|=||=..-. ..+....+. ++ +..+.|+++|+.|+++||+||+|+
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~-~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQS-LAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcC-CCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 57788999999999999654321 111111111 11 468899999999999999999996
No 105
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=89.79 E-value=0.92 Score=50.71 Aligned_cols=60 Identities=17% Similarity=0.366 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCEEEEccccccc-----cCCCCCCCCCc--ChHHHHHHHHHHHHHcCCEEEEEcC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIA-----FDPDPPAPFIG--GSLEALDNALSWAEAYNIKCIIDLH 287 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~-----~~~~~~~~~~~--~~l~~Ld~~v~~a~k~Gi~VILDlH 287 (532)
.+.++.|+++|+++|=|+=-+..- .++......++ +..+.|+++|+.|+++||+||||+-
T Consensus 36 ~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 36 TQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred HHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 467899999999999883222100 00100001112 4689999999999999999999963
No 106
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=89.60 E-value=15 Score=32.82 Aligned_cols=101 Identities=15% Similarity=0.129 Sum_probs=68.1
Q ss_pred ceEEEEEecCCeEEEEecCCCceeEEcCCCCCCcceEEEEEecCCeEEEEe-cCCeEEEEeCCCceEEEeecCCCCCceE
Q 009560 67 TQVQIKSVTLEKYVCAESGGGTDVSVTRDVASSWETFTLWRVSESEFQFRT-SQGQFLTCDGEGCVVSATAKSPSTPETF 145 (532)
Q Consensus 67 ~~v~~~s~~~~~yv~ae~gg~~~l~anr~~~~~wE~f~~~~~~~~~~~lr~-~~~~~v~~~~~g~~~~a~~~~~~~~e~F 145 (532)
.+++|=+ .+|.||-....| .+-.-++.-+..-.|++.-++.+.|.+|+ ..++|+|.+..|- |-+... +..-+.|
T Consensus 3 R~~~Ly~-~~~~~L~I~~~G--~V~Gt~~~~~~~~ile~~s~~~g~V~ik~~~s~~YLCmn~~G~-ly~s~~-~~~dC~F 77 (126)
T smart00442 3 RLRQLYC-RNGQHLQILPDG--TVDGTRDESSSFTILEIIAVAVGVVAIKGVASCRYLCMNKCGK-LYGSKN-FTEDCVF 77 (126)
T ss_pred eEEEEEe-CCCeEEEEcCCc--eEecccCCCCcceEEEEEeccCCEEEEEEcccceEEEECCCCC-EEEccc-CCCCcEE
Confidence 4566665 456888887554 55566666666777887778889999999 7899999999884 766665 7899999
Q ss_pred EEEEcCCCcEEE-EecCC--ceEEeccCce
Q 009560 146 EIERNNDSRVHI-KLKSG--TYLQATLGNQ 172 (532)
Q Consensus 146 ~~v~~~~~~v~i-~a~nG--~~l~a~~~~~ 172 (532)
.=....++-..+ ...+. .||..+..|.
T Consensus 78 ~E~~~~n~y~~y~S~~~~~~~ylal~~~G~ 107 (126)
T smart00442 78 REEMEENGYNTYASAKYRKRWYVALNKKGR 107 (126)
T ss_pred EEEeccCCeEEEEEcccCCceEEEECCCCC
Confidence 644332233323 33333 6776665554
No 107
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=89.16 E-value=3.4 Score=43.55 Aligned_cols=126 Identities=13% Similarity=0.078 Sum_probs=75.8
Q ss_pred ccCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCC-CcChHHHHHHHHHHHHHcCCE-EEEEcC-CCCCCCCCCCCCC
Q 009560 224 TFITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF-IGGSLEALDNALSWAEAYNIK-CIIDLH-AAPGSQNGMEHSA 300 (532)
Q Consensus 224 t~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~-~~~~l~~Ld~~v~~a~k~Gi~-VILDlH-~~pGsqn~~~~sg 300 (532)
..++++.++.|++.|+|.|=|+| ..+.+.. -..+ .....+.+.++++.++++|+. |-+|+- +.||
T Consensus 99 ~~lt~e~l~~lk~~G~nrisiGv--QS~~d~v-L~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPg--------- 166 (353)
T PRK05904 99 ELITQSQINLLKKNKVNRISLGV--QSMNNNI-LKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPI--------- 166 (353)
T ss_pred CcCCHHHHHHHHHcCCCEEEEec--ccCCHHH-HHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCC---------
Confidence 45689999999999999666655 2221110 0000 123567888999999999997 888865 3343
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCC------CCCcccHHHHHHHHHHHHHhhCCCcEEE
Q 009560 301 SRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAA------TVPLDILVPYYKQGYQIVRKYSPTAYVI 374 (532)
Q Consensus 301 ~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~------~~~~~~l~~~~~~~~~aIR~~~~~~~Vi 374 (532)
...+.+.+.++.+.+ .+ -+.+..+.+.=||..+ ..+.+.-.+.++.+.+.+++.+-.++=+
T Consensus 167 -----------qt~e~~~~tl~~~~~-l~-p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei 233 (353)
T PRK05904 167 -----------LKLKDLDEVFNFILK-HK-INHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNKLNYKRYEV 233 (353)
T ss_pred -----------CCHHHHHHHHHHHHh-cC-CCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHHcCCcEEec
Confidence 223334444443333 22 1234445555566521 1234456677788888898888877644
No 108
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=88.80 E-value=1.1 Score=49.29 Aligned_cols=59 Identities=24% Similarity=0.193 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCCEEEEcccccc-------ccCCCCCC---------CCCc--ChHHHHHHHHHHHHHcCCEEEEEc
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWI-------AFDPDPPA---------PFIG--GSLEALDNALSWAEAYNIKCIIDL 286 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~-------~~~~~~~~---------~~~~--~~l~~Ld~~v~~a~k~Gi~VILDl 286 (532)
.+-++.|+++|+++|=|+=.+.. ..++.... ..++ +..+.|+++|+.|+++||+||+|+
T Consensus 25 ~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 25 AERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYADV 101 (479)
T ss_pred HHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45589999999999988442211 11111111 1122 368899999999999999999995
No 109
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=88.43 E-value=5.8 Score=41.64 Aligned_cols=132 Identities=14% Similarity=0.098 Sum_probs=75.5
Q ss_pred CHHHHHHHHHcCCCEEEEccccc---cccCCCCCCCCC----cChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCC
Q 009560 227 TIEDFNFLYRHGINTVRIPVGWW---IAFDPDPPAPFI----GGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHS 299 (532)
Q Consensus 227 te~d~~~la~~G~N~VRIpv~ww---~~~~~~~~~~~~----~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~s 299 (532)
.++-.+.+|++|+.-|=|---.- ...+. ...+|+ +..-+.+.++++.|+|+||++-+-+|... |.+.
T Consensus 93 ~dqW~~~ak~aGakY~VlTakHHDGF~LW~S-~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~d-----w~~~ 166 (346)
T PF01120_consen 93 ADQWAKLAKDAGAKYVVLTAKHHDGFCLWPS-KYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPWD-----WHHP 166 (346)
T ss_dssp HHHHHHHHHHTT-SEEEEEEE-TT--BSS---TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESSS-----CCCT
T ss_pred HHHHHHHHHHcCCCEEEeehhhcCccccCCC-CCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecchH-----hcCc
Confidence 36778888999999986633110 01111 112232 13568899999999999999999887631 1111
Q ss_pred CCCCCC-CCC-C---C----hhh-HHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCC
Q 009560 300 ASRDGT-TDW-P---A----SDY-ISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSP 369 (532)
Q Consensus 300 g~~~g~-~~W-~---~----~~~-~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~ 369 (532)
...... ... . . ++. .+.+.+-++.|.+|| .+.++=||...... .+.+.. ...++.||+..|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y--~~d~lWfDg~~~~~-----~~~~~~--~~~~~~i~~~qp 237 (346)
T PF01120_consen 167 DYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRY--KPDILWFDGGWPDP-----DEDWDS--AELYNWIRKLQP 237 (346)
T ss_dssp TTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCS--TESEEEEESTTSCC-----CTHHHH--HHHHHHHHHHST
T ss_pred ccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCC--CcceEEecCCCCcc-----ccccCH--HHHHHHHHHhCC
Confidence 111000 000 0 0 112 235566777888999 56666688776641 122322 889999999999
Q ss_pred CcEE
Q 009560 370 TAYV 373 (532)
Q Consensus 370 ~~~V 373 (532)
+.+|
T Consensus 238 ~~ii 241 (346)
T PF01120_consen 238 DVII 241 (346)
T ss_dssp TSEE
T ss_pred eEEE
Confidence 7654
No 110
>PRK09505 malS alpha-amylase; Reviewed
Probab=87.77 E-value=1.5 Score=50.14 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCCEEEEccccccc-------------------cCCCCCCCCCc--ChHHHHHHHHHHHHHcCCEEEEEc
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIA-------------------FDPDPPAPFIG--GSLEALDNALSWAEAYNIKCIIDL 286 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~-------------------~~~~~~~~~~~--~~l~~Ld~~v~~a~k~Gi~VILDl 286 (532)
.+-++.|+++|+|+|=|+=.+... ..+......++ +..+.|+++|+.|+++||+||||+
T Consensus 233 ~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~ 312 (683)
T PRK09505 233 TEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDV 312 (683)
T ss_pred HHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 455899999999999874211110 00000011122 468999999999999999999995
No 111
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=87.62 E-value=21 Score=37.20 Aligned_cols=136 Identities=19% Similarity=0.250 Sum_probs=81.9
Q ss_pred HHHHHHHHHcCCCEEEEccc----cccccCCCC----CCCC------CcC--hHHHHHHHHHHHHHcCCEEEEEcCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVG----WWIAFDPDP----PAPF------IGG--SLEALDNALSWAEAYNIKCIIDLHAAPG 291 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~----ww~~~~~~~----~~~~------~~~--~l~~Ld~~v~~a~k~Gi~VILDlH~~pG 291 (532)
++.++.|+..++|.+-+.+. |..-...-| .+.+ ..+ ..+.+.++++.|+++||.||..+-. ||
T Consensus 21 k~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPEiD~-PG 99 (329)
T cd06568 21 KRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPEIDM-PG 99 (329)
T ss_pred HHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEecCC-cH
Confidence 56788899999999988773 211111100 0000 001 5788999999999999999998753 54
Q ss_pred CCCC-------CCCCCC----------CCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCCcccHH
Q 009560 292 SQNG-------MEHSAS----------RDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVPLDILV 354 (532)
Q Consensus 292 sqn~-------~~~sg~----------~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~ 354 (532)
.... ....+. ..+.....+++..+-..++++.+++-|.+.--.+| .-|... ...+.+.
T Consensus 100 H~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f~~~~iHiG---gDE~~~--~~~~~~~ 174 (329)
T cd06568 100 HTNAALAAYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAALTPGPYIHIG---GDEAHS--TPHDDYA 174 (329)
T ss_pred HHHHHHHhChhhccCCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHhCCCCeEEEe---cccCCC--CchHHHH
Confidence 2110 000000 00112334567777788888888887764322233 233332 2346678
Q ss_pred HHHHHHHHHHHhhCC
Q 009560 355 PYYKQGYQIVRKYSP 369 (532)
Q Consensus 355 ~~~~~~~~aIR~~~~ 369 (532)
.|.+++.+.+++.+.
T Consensus 175 ~f~~~~~~~v~~~Gk 189 (329)
T cd06568 175 YFVNRVRAIVAKYGK 189 (329)
T ss_pred HHHHHHHHHHHHCCC
Confidence 899999999998875
No 112
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=87.35 E-value=5.3 Score=42.81 Aligned_cols=123 Identities=15% Similarity=0.162 Sum_probs=75.7
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCC-CcChHHHHHHHHHHHHHcCCE-EEEEcCC-CCCCCCCCCCCCC
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF-IGGSLEALDNALSWAEAYNIK-CIIDLHA-APGSQNGMEHSAS 301 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~-~~~~l~~Ld~~v~~a~k~Gi~-VILDlH~-~pGsqn~~~~sg~ 301 (532)
-++++.++.|+++|+|.|=|.| ..+ ++..-... .....+.+.++++.+++.|+. |-+|+-. .||
T Consensus 112 ~lt~e~l~~l~~~GvnrislGv--QS~-~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPg---------- 178 (400)
T PRK07379 112 TFDLEQLQGYRSLGVNRVSLGV--QAF-QDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPH---------- 178 (400)
T ss_pred cCCHHHHHHHHHCCCCEEEEEc--ccC-CHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC----------
Confidence 3689999999999999555544 322 21100000 123567788899999999998 7788753 343
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCC-----------CCCcccHHHHHHHHHHHHHhhCCC
Q 009560 302 RDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAA-----------TVPLDILVPYYKQGYQIVRKYSPT 370 (532)
Q Consensus 302 ~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~-----------~~~~~~l~~~~~~~~~aIR~~~~~ 370 (532)
...+.+.+-++.+.+ . +-..+-.+.+.-||..+ ..+.+...+.+..+.+.+++.+-.
T Consensus 179 ----------qt~e~~~~tl~~~~~-l-~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~ 246 (400)
T PRK07379 179 ----------QTLEDWQASLEAAIA-L-NPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE 246 (400)
T ss_pred ----------CCHHHHHHHHHHHHc-C-CCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 122233333333332 2 22455567788888642 113455667888888999998876
Q ss_pred cE
Q 009560 371 AY 372 (532)
Q Consensus 371 ~~ 372 (532)
++
T Consensus 247 ~y 248 (400)
T PRK07379 247 HY 248 (400)
T ss_pred ee
Confidence 65
No 113
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=87.04 E-value=17 Score=38.31 Aligned_cols=148 Identities=13% Similarity=0.151 Sum_probs=83.0
Q ss_pred HHHHHHHHHcCCCEEEEccc----cccccCCCCC----CCCC-----------------cC--hHHHHHHHHHHHHHcCC
Q 009560 228 IEDFNFLYRHGINTVRIPVG----WWIAFDPDPP----APFI-----------------GG--SLEALDNALSWAEAYNI 280 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~----ww~~~~~~~~----~~~~-----------------~~--~l~~Ld~~v~~a~k~Gi 280 (532)
++-++.|+..++|.+-+.+. |..-.+.-|. +-+. .+ ..+.+.++++.|+++||
T Consensus 21 k~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~rgI 100 (357)
T cd06563 21 KRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIVAYAAERGI 100 (357)
T ss_pred HHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHHHHHHHHcCC
Confidence 57788899999999998772 2111110000 0000 11 58899999999999999
Q ss_pred EEEEEcCCCCCCCCC----CCC---C----------CCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCC
Q 009560 281 KCIIDLHAAPGSQNG----MEH---S----------ASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEP 343 (532)
Q Consensus 281 ~VILDlH~~pGsqn~----~~~---s----------g~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP 343 (532)
.||..+- .||.... +.. . +.........+++..+-..++++++++-|...--.+|-|=.+.-
T Consensus 101 ~VIPEID-~PGH~~a~l~~~pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~~ll~E~~~lF~~~~iHiGgDE~~~~ 179 (357)
T cd06563 101 TVIPEID-MPGHALAALAAYPELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFLEDVLDEVAELFPSPYIHIGGDEVPKG 179 (357)
T ss_pred EEEEecC-CchhHHHHHHhCccccCCCCCCccccccCcCCCccCCCChhHHHHHHHHHHHHHHhCCCCeEEEeccccCCc
Confidence 9999865 3552211 000 0 00011122335677778888889998888753323343322221
Q ss_pred CCCC-------------CCc-ccHHHHHHHHHHHHHhhCCCcEEEEeC
Q 009560 344 SAAT-------------VPL-DILVPYYKQGYQIVRKYSPTAYVIVCQ 377 (532)
Q Consensus 344 ~~~~-------------~~~-~~l~~~~~~~~~aIR~~~~~~~Viv~~ 377 (532)
.... .+. +.+..|.+++.+.|++.+. ++++-++
T Consensus 180 ~w~~~~~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~~~G~-~~i~W~d 226 (357)
T cd06563 180 QWEKSPACQARMKEEGLKDEHELQSYFIKRVEKILASKGK-KMIGWDE 226 (357)
T ss_pred ccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCC-EEEEeec
Confidence 1100 011 2335678889999998764 3444343
No 114
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=86.91 E-value=3.8 Score=36.45 Aligned_cols=59 Identities=24% Similarity=0.137 Sum_probs=50.3
Q ss_pred cCCeEEEEeCCCceEEEeecCCCCCceEEEEEcCCCcEEEEe-cCCceEEeccCceEEeCC
Q 009560 118 SQGQFLTCDGEGCVVSATAKSPSTPETFEIERNNDSRVHIKL-KSGTYLQATLGNQLTSDY 177 (532)
Q Consensus 118 ~~~~~v~~~~~g~~~~a~~~~~~~~e~F~~v~~~~~~v~i~a-~nG~~l~a~~~~~v~ad~ 177 (532)
.++.|+....+|. |.++.+.......|++.-.+.+.|+|+. ..++|||.+..|.|.+.-
T Consensus 6 ~~~~~L~I~~dG~-V~Gt~~~~~~~s~l~~~s~~~g~v~i~~v~s~~YLCmn~~G~ly~s~ 65 (123)
T cd00058 6 RTGFHLQILPDGT-VDGTRDDSSSYTILERIAVAVGVVSIKGVASCRYLCMNKCGKLYGSK 65 (123)
T ss_pred cCCeEEEEcCCCc-EecccCCCCCCceEEEEECCCCEEEEEEcccceEEEECCCCCEEECC
Confidence 3488998888885 8998888778999999988788999988 799999999999887754
No 115
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=86.72 E-value=6.1 Score=41.97 Aligned_cols=226 Identities=13% Similarity=0.113 Sum_probs=113.3
Q ss_pred HHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEE-cCCCCCCCCCCCCCCCCCCCCCCC----
Q 009560 235 YRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIID-LHAAPGSQNGMEHSASRDGTTDWP---- 309 (532)
Q Consensus 235 a~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILD-lH~~pGsqn~~~~sg~~~g~~~W~---- 309 (532)
++.|+|-||-..-|-...+ .++ -.+.+.|++++....+|+-.|.+ ||- +...... ..|.
T Consensus 15 ~Ei~v~yi~~~~v~h~~~q----~~~--~~~t~~d~i~d~~~~~~~~~ie~~l~~-----~~l~~~~-----~~wq~n~~ 78 (428)
T COG3664 15 DEIQVNYIRRHGVWHVNAQ----KLF--YPFTYIDEIIDTLLDLGLDLIELFLIW-----NNLNTKE-----HQWQLNVD 78 (428)
T ss_pred hhhceeeehhcceeeeeec----ccc--CChHHHHHHHHHHHHhccHHHHHhhcc-----cchhhhh-----hhcccccC
Confidence 4667777775443310111 111 13678999999999988544433 332 1111111 0232
Q ss_pred Ch-hhHHHHHHHHHHHHHHhCCC-CcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCchhh
Q 009560 310 AS-DYISQTLDVIDFLASRYAKH-PALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQRIGNADPLEL 387 (532)
Q Consensus 310 ~~-~~~~~~~~~w~~la~ry~~~-p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~~~~~~~~~~~ 387 (532)
.+ ...++..++++.+..||+-. ...+.|++.|||+.. .+...+.+.|..+. |+..|. |=+++.|....-..+
T Consensus 79 ~~~~~~dl~~~fl~h~~~~vg~e~v~kw~f~~~~~pn~~-ad~~eyfk~y~~~a---~~~~p~--i~vg~~w~~e~l~~~ 152 (428)
T COG3664 79 DPKSVFDLIAAFLKHVIRRVGVEFVRKWPFYSPNEPNLL-ADKQEYFKLYDATA---RQRAPS--IQVGGSWNTERLHEF 152 (428)
T ss_pred CcHhHHHHHHHHHHHHHHHhChhheeecceeecCCCCcc-cchHHHHHHHHhhh---hccCcc--eeeccccCcHHHhhh
Confidence 12 46788889999999999743 467899999999875 33334444444433 455553 334443311001222
Q ss_pred hhccCCCCcEEEEeeecccCCCccccCChhhhH----HHHH---HHHHHHHHHHHhcCCCcEEEeccCcccCCCCCCHHH
Q 009560 388 YQANIGLHNIVVDLHYYNLFDTFFVNMSTVDNI----LFIY---KSREAQLQALNNANGPLVFIGEWVNEWNVTSGTQKD 460 (532)
Q Consensus 388 ~~~~~~~~nvv~s~H~Y~~f~~~~~~~~~~~~i----~~i~---~~~~~~~~~~~~~~g~pv~vGEwG~~~~~~~a~~~~ 460 (532)
.+ ..++=..++.|.|..-...++.+..+... +.+. +.+.+.++.. .-|.|.++.||...+.........
T Consensus 153 ~k--~~d~idfvt~~a~~~~av~~~~~~~~~~~l~~~~~~l~~~r~~~d~i~~~--~~~~pl~~~~wntlt~~~~~~n~s 228 (428)
T COG3664 153 LK--KADEIDFVTELANSVDAVDFSTPGAEEVKLSELKRTLEDLRGLKDLIQHH--SLGLPLLLTNWNTLTGPREPTNGS 228 (428)
T ss_pred hh--ccCcccceeecccccccccccCCCchhhhhhhhhhhhhHHHHHHHHHHhc--cCCCcceeecccccCCCccccCce
Confidence 22 23344456667776422222222111100 1111 1112222111 125689999999876533222222
Q ss_pred H--HHHHHHHHHHHHhCCCcEEEEcccC
Q 009560 461 Y--QDFGSAQLEVYNAASFGWAYWTLKN 486 (532)
Q Consensus 461 ~--~~~~~~ql~~~~~~~~Gw~yW~~k~ 486 (532)
| ..|+..++.-....-.+..||++..
T Consensus 229 y~raa~i~~~Lr~~g~~v~a~~yW~~sd 256 (428)
T COG3664 229 YVRAAYIMRLLREAGSPVDAFGYWTNSD 256 (428)
T ss_pred eehHHHHHHHHHhcCChhhhhhhhhccc
Confidence 2 2455554443333445777888775
No 116
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=86.69 E-value=3.8 Score=36.59 Aligned_cols=65 Identities=26% Similarity=0.171 Sum_probs=52.5
Q ss_pred EEEEecCCeEEEEeCCCceEEEeecCCCCCceEEEEEcCCCcEEEEe-cCCceEEeccCceEEeCCC
Q 009560 113 FQFRTSQGQFLTCDGEGCVVSATAKSPSTPETFEIERNNDSRVHIKL-KSGTYLQATLGNQLTSDYP 178 (532)
Q Consensus 113 ~~lr~~~~~~v~~~~~g~~~~a~~~~~~~~e~F~~v~~~~~~v~i~a-~nG~~l~a~~~~~v~ad~~ 178 (532)
.+|=+.+|.|+....+|. +..+.+...+...|++.--+.+.|+||. ..++|||.+..|.|.+...
T Consensus 5 ~~Ly~~~~~~L~I~~~G~-V~Gt~~~~~~~~ile~~s~~~g~V~ik~~~s~~YLCmn~~G~ly~s~~ 70 (126)
T smart00442 5 RQLYCRNGQHLQILPDGT-VDGTRDESSSFTILEIIAVAVGVVAIKGVASCRYLCMNKCGKLYGSKN 70 (126)
T ss_pred EEEEeCCCeEEEEcCCce-EecccCCCCcceEEEEEeccCCEEEEEEcccceEEEECCCCCEEEccc
Confidence 344455678998887774 8888888888889998887678999988 7899999999999887643
No 117
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=86.15 E-value=2.9 Score=48.62 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCCEEEEccccccc------cCCCCCCCCCc--ChHHHHHHHHHHHHHcCCEEEEEcC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIA------FDPDPPAPFIG--GSLEALDNALSWAEAYNIKCIIDLH 287 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~------~~~~~~~~~~~--~~l~~Ld~~v~~a~k~Gi~VILDlH 287 (532)
.+.+..|+++|+++|=|+=-+-.. .+.......++ +..+.|+++++.|+++||+||+|+-
T Consensus 19 ~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiV 86 (825)
T TIGR02401 19 AALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIV 86 (825)
T ss_pred HHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 577899999999999773211100 01111111122 4689999999999999999999953
No 118
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=86.04 E-value=7.9 Score=40.89 Aligned_cols=123 Identities=12% Similarity=0.104 Sum_probs=74.3
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCC-CcChHHHHHHHHHHHHHcCCE-EEEEcCC-CCCCCCCCCCCCC
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF-IGGSLEALDNALSWAEAYNIK-CIIDLHA-APGSQNGMEHSAS 301 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~-~~~~l~~Ld~~v~~a~k~Gi~-VILDlH~-~pGsqn~~~~sg~ 301 (532)
.+|++.++.++++|+|.|-|.| ..+ ++..-... .....+...++++.++++|+. |-+|+-. .||
T Consensus 96 ~~t~e~l~~l~~~G~~rvsiGv--qS~-~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPg---------- 162 (374)
T PRK05799 96 TFTEEKLKILKSMGVNRLSIGL--QAW-QNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLPN---------- 162 (374)
T ss_pred cCCHHHHHHHHHcCCCEEEEEC--ccC-CHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC----------
Confidence 4689999999999999555554 322 21100011 112577888899999999996 6688653 232
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCC-----------CCCcccHHHHHHHHHHHHHhhCCC
Q 009560 302 RDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAA-----------TVPLDILVPYYKQGYQIVRKYSPT 370 (532)
Q Consensus 302 ~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~-----------~~~~~~l~~~~~~~~~aIR~~~~~ 370 (532)
++.+.+.+.++.+.+ .+ -+.+-.|.+.-||..+ ..+.+...+.++.+.+.+.+.+-.
T Consensus 163 ----------qt~e~~~~~l~~~~~-l~-~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~ 230 (374)
T PRK05799 163 ----------QTLEDWKETLEKVVE-LN-PEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYH 230 (374)
T ss_pred ----------CCHHHHHHHHHHHHh-cC-CCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCc
Confidence 234445555555544 22 2234456666677532 012345567778888888888766
Q ss_pred cE
Q 009560 371 AY 372 (532)
Q Consensus 371 ~~ 372 (532)
++
T Consensus 231 ~y 232 (374)
T PRK05799 231 QY 232 (374)
T ss_pred EE
Confidence 54
No 119
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=84.80 E-value=11 Score=39.82 Aligned_cols=123 Identities=19% Similarity=0.092 Sum_probs=75.4
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCC-CcChHHHHHHHHHHHHHcCCE-EEEEcCC-CCCCCCCCCCCCC
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF-IGGSLEALDNALSWAEAYNIK-CIIDLHA-APGSQNGMEHSAS 301 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~-~~~~l~~Ld~~v~~a~k~Gi~-VILDlH~-~pGsqn~~~~sg~ 301 (532)
.++++.++.|+++|+|.|-|+| ..+ ++..-..+ .....+.+.++++.+++.|+. |.+|+-. .||
T Consensus 105 ~i~~e~l~~l~~~G~~rvslGv--QS~-~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPg---------- 171 (375)
T PRK05628 105 STSPEFFAALRAAGFTRVSLGM--QSA-APHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPG---------- 171 (375)
T ss_pred CCCHHHHHHHHHcCCCEEEEec--ccC-CHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCC----------
Confidence 4689999999999999777766 222 21110011 113577788899999999998 8899753 343
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCC-----------CCCcccHHHHHHHHHHHHHhhCCC
Q 009560 302 RDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAA-----------TVPLDILVPYYKQGYQIVRKYSPT 370 (532)
Q Consensus 302 ~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~-----------~~~~~~l~~~~~~~~~aIR~~~~~ 370 (532)
...+.+.+.++.+.+ ++ -..+..|.+.=||..+ ..+.+...+.++.+.+.+++.+-.
T Consensus 172 ----------qt~~~~~~tl~~~~~-l~-~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~~ 239 (375)
T PRK05628 172 ----------ESDDDWRASLDAALE-AG-VDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGFD 239 (375)
T ss_pred ----------CCHHHHHHHHHHHHh-cC-CCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCCC
Confidence 223344444444433 22 1234446666677542 112344667788888888888776
Q ss_pred cE
Q 009560 371 AY 372 (532)
Q Consensus 371 ~~ 372 (532)
++
T Consensus 240 ~y 241 (375)
T PRK05628 240 WY 241 (375)
T ss_pred ee
Confidence 54
No 120
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=84.57 E-value=11 Score=39.85 Aligned_cols=123 Identities=16% Similarity=0.078 Sum_probs=76.2
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCC-CcChHHHHHHHHHHHHHcCCE-EEEEcCC-CCCCCCCCCCCCC
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF-IGGSLEALDNALSWAEAYNIK-CIIDLHA-APGSQNGMEHSAS 301 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~-~~~~l~~Ld~~v~~a~k~Gi~-VILDlH~-~pGsqn~~~~sg~ 301 (532)
.++++.++.++++|+|.|-|.| ..+ ++..-..+ .....+.+.++++.+++.|+. |-+||-. .||
T Consensus 100 ~~~~~~l~~l~~~G~nrislGv--QS~-~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPg---------- 166 (370)
T PRK06294 100 NLSESYIRALALTGINRISIGV--QTF-DDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYGLPT---------- 166 (370)
T ss_pred CCCHHHHHHHHHCCCCEEEEcc--ccC-CHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC----------
Confidence 4689999999999999666655 222 21100011 112567788899999999996 8888653 232
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCC-----------CCCcccHHHHHHHHHHHHHhhCCC
Q 009560 302 RDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAA-----------TVPLDILVPYYKQGYQIVRKYSPT 370 (532)
Q Consensus 302 ~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~-----------~~~~~~l~~~~~~~~~aIR~~~~~ 370 (532)
...+.+.+-++.+.+ ++ -+.+-.|.+.=||..+ ..+.+...+.++.+.+.+++.+-.
T Consensus 167 ----------qt~~~~~~~l~~~~~-l~-~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~ 234 (370)
T PRK06294 167 ----------QSLSDFIVDLHQAIT-LP-ITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFT 234 (370)
T ss_pred ----------CCHHHHHHHHHHHHc-cC-CCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCC
Confidence 123334444444443 22 2355567788788631 013345677888888889888876
Q ss_pred cE
Q 009560 371 AY 372 (532)
Q Consensus 371 ~~ 372 (532)
++
T Consensus 235 ~y 236 (370)
T PRK06294 235 RY 236 (370)
T ss_pred ee
Confidence 65
No 121
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=84.29 E-value=10 Score=41.06 Aligned_cols=123 Identities=20% Similarity=0.245 Sum_probs=73.6
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCC-CcChHHHHHHHHHHHHHcCCEEE-EEcC-CCCCCCCCCCCCCC
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF-IGGSLEALDNALSWAEAYNIKCI-IDLH-AAPGSQNGMEHSAS 301 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~-~~~~l~~Ld~~v~~a~k~Gi~VI-LDlH-~~pGsqn~~~~sg~ 301 (532)
.++++.++.|+++|+|.|-|.|. .+.+.. -..+ .....+.+.++++.++++|+.+| +|+- ..||
T Consensus 138 ~lt~e~l~~l~~~G~~rvslGvQ--S~~~~~-L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~---------- 204 (430)
T PRK08208 138 TTTAEKLALLAARGVNRLSIGVQ--SFHDSE-LHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIPG---------- 204 (430)
T ss_pred cCCHHHHHHHHHcCCCEEEEecc--cCCHHH-HHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC----------
Confidence 46899999999999997777662 221110 0000 12257788899999999999864 7864 3332
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCC-----CCcccHHHHHHHHHHHHHhhCCCcE
Q 009560 302 RDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAAT-----VPLDILVPYYKQGYQIVRKYSPTAY 372 (532)
Q Consensus 302 ~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~-----~~~~~l~~~~~~~~~aIR~~~~~~~ 372 (532)
...+.+.+.++.+.+ .+ -+.+-.+.+.=||..+- .+.+...+.++.+.+.+.+.+-.++
T Consensus 205 ----------qt~e~~~~~l~~~~~-l~-~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~~y 268 (430)
T PRK08208 205 ----------QTHASWMESLDQALV-YR-PEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYTQT 268 (430)
T ss_pred ----------CCHHHHHHHHHHHHh-CC-CCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 123334444444432 22 23455566776775420 1235566777888888888776543
No 122
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=83.80 E-value=19 Score=37.75 Aligned_cols=147 Identities=12% Similarity=0.157 Sum_probs=82.7
Q ss_pred HHHHHHHHHcCCCEEEEccc---cccccCCCCC-----CCCCcC---hHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVG---WWIAFDPDPP-----APFIGG---SLEALDNALSWAEAYNIKCIIDLHAAPGSQNGM 296 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~---ww~~~~~~~~-----~~~~~~---~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~ 296 (532)
++-++.|+..++|.+-+.+. -|.+.-+.-| +-|..+ ..+.+.++|+.|+++||.||..+- .||....+
T Consensus 21 k~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID-~PGH~~a~ 99 (348)
T cd06562 21 KRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEID-TPGHTGSW 99 (348)
T ss_pred HHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEecc-CchhhHHH
Confidence 57788899999999988763 1122111111 011111 688999999999999999999874 36532111
Q ss_pred C---------------C-CCC-CCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCC------------
Q 009560 297 E---------------H-SAS-RDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAAT------------ 347 (532)
Q Consensus 297 ~---------------~-sg~-~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~------------ 347 (532)
- . +.. ..+...-.+++..+-..++++.+++-|...--.+|-|=.+......
T Consensus 100 ~~~~p~l~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~~~~iHiGgDE~~~~~w~~~p~~~~~m~~~g 179 (348)
T cd06562 100 GQGYPELLTGCYAVWRKYCPEPPCGQLNPTNPKTYDFLKTLFKEVSELFPDKYFHLGGDEVNFNCWNSNPEIQKFMKKNN 179 (348)
T ss_pred HHhChhhhCCCCccccccccCCCCccccCCChhHHHHHHHHHHHHHHhcCCcceEeecCCCCCCcccCCHHHHHHHHHcC
Confidence 0 0 000 0011222356777777888888888886432233333222221110
Q ss_pred -CC-cccHHHHHHHHHHHHHhhCCCcEEEEe
Q 009560 348 -VP-LDILVPYYKQGYQIVRKYSPTAYVIVC 376 (532)
Q Consensus 348 -~~-~~~l~~~~~~~~~aIR~~~~~~~Viv~ 376 (532)
.+ .+....|.+++.+.|++.+.+ +++-+
T Consensus 180 ~~~~~~l~~~f~~~~~~~l~~~Gk~-~i~W~ 209 (348)
T cd06562 180 GTDYSDLESYFIQRALDIVRSLGKT-PIVWE 209 (348)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCe-EEEee
Confidence 01 122345778889999988753 34434
No 123
>PRK05660 HemN family oxidoreductase; Provisional
Probab=83.78 E-value=9.9 Score=40.37 Aligned_cols=124 Identities=19% Similarity=0.217 Sum_probs=74.0
Q ss_pred ccCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCC-CcChHHHHHHHHHHHHHcCCEE-EEEcCC-CCCCCCCCCCCC
Q 009560 224 TFITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF-IGGSLEALDNALSWAEAYNIKC-IIDLHA-APGSQNGMEHSA 300 (532)
Q Consensus 224 t~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~-~~~~l~~Ld~~v~~a~k~Gi~V-ILDlH~-~pGsqn~~~~sg 300 (532)
..++++.++.|+++|+|.|=|.| ..+ ++..-... .....+...++++.+++.|+.. -+|+-. .||
T Consensus 103 ~~l~~e~l~~Lk~~Gv~risiGv--qS~-~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpg--------- 170 (378)
T PRK05660 103 GTVEADRFVGYQRAGVNRISIGV--QSF-SEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPD--------- 170 (378)
T ss_pred CcCCHHHHHHHHHcCCCEEEecc--CcC-CHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC---------
Confidence 34689999999999999555544 222 21100000 1236778888999999999975 488753 232
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCC------C-CCcccHHHHHHHHHHHHHhhCCCcE
Q 009560 301 SRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAA------T-VPLDILVPYYKQGYQIVRKYSPTAY 372 (532)
Q Consensus 301 ~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~------~-~~~~~l~~~~~~~~~aIR~~~~~~~ 372 (532)
.+.+.+.+.++.+.+ .+ -+.+..|.+.=||..+ . .+.+...+.++.+.+.+++.+-.++
T Consensus 171 -----------qt~~~~~~~l~~~~~-l~-p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~y 236 (378)
T PRK05660 171 -----------QSLEEALDDLRQAIA-LN-PPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQY 236 (378)
T ss_pred -----------CCHHHHHHHHHHHHh-cC-CCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCcEe
Confidence 233444455554444 22 2344456666666421 0 1234456788888888888887655
No 124
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=83.73 E-value=4.3 Score=47.54 Aligned_cols=60 Identities=15% Similarity=0.120 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCCEEEEccccccc------cCCCCCCCCCc--ChHHHHHHHHHHHHHcCCEEEEEcC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIA------FDPDPPAPFIG--GSLEALDNALSWAEAYNIKCIIDLH 287 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~------~~~~~~~~~~~--~~l~~Ld~~v~~a~k~Gi~VILDlH 287 (532)
.+.+..|+++|+++|=++=-+-.. .+.......++ +..+.|+++++.|+++||+||+|+-
T Consensus 23 ~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 23 AELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred HHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 577899999999999873321110 01111111122 4689999999999999999999964
No 125
>PLN02784 alpha-amylase
Probab=83.68 E-value=3.2 Score=48.20 Aligned_cols=58 Identities=21% Similarity=0.185 Sum_probs=41.9
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCC-----Cc--ChHHHHHHHHHHHHHcCCEEEEEc
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF-----IG--GSLEALDNALSWAEAYNIKCIIDL 286 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~-----~~--~~l~~Ld~~v~~a~k~Gi~VILDl 286 (532)
++.++.|+++|+++|=||=..-.. .+....++ ++ +..+.|+.+|+.|+++||+||+|+
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~-s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESV-SPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCC-CCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 677999999999999986543111 11111111 11 468899999999999999999995
No 126
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=83.30 E-value=14 Score=38.84 Aligned_cols=123 Identities=19% Similarity=0.119 Sum_probs=72.8
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCC-CcChHHHHHHHHHHHHHcCCE-EEEEcCC-CCCCCCCCCCCCC
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF-IGGSLEALDNALSWAEAYNIK-CIIDLHA-APGSQNGMEHSAS 301 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~-~~~~l~~Ld~~v~~a~k~Gi~-VILDlH~-~pGsqn~~~~sg~ 301 (532)
.++++.++.|+++|+|.|-|.| ..+ ++..-..+ .....+.+.++++.+++.|+. |-+|+-. .||
T Consensus 97 ~lt~e~l~~l~~~Gv~risiGv--qS~-~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg---------- 163 (360)
T TIGR00539 97 LITAEWCKGLKGAGINRLSLGV--QSF-RDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPL---------- 163 (360)
T ss_pred CCCHHHHHHHHHcCCCEEEEec--ccC-ChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCC----------
Confidence 4689999999999999666655 222 22110011 123678888999999999995 6788764 232
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCC-------CCCcccHHHHHHHHHHHHHhhCCCcE
Q 009560 302 RDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAA-------TVPLDILVPYYKQGYQIVRKYSPTAY 372 (532)
Q Consensus 302 ~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~-------~~~~~~l~~~~~~~~~aIR~~~~~~~ 372 (532)
.+.+.+.+.++.+.+ ++ -+.+..+.+.=||..+ ..+.+...+.+..+.+.+++.+-.++
T Consensus 164 ----------qt~~~~~~~l~~~~~-l~-~~~is~y~l~~~~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~y 229 (360)
T TIGR00539 164 ----------QTLNSLKEELKLAKE-LP-INHLSAYALSVEPNTNFEKNAKKLPDDDSCAHFDEVVREILEGFGFKQY 229 (360)
T ss_pred ----------CCHHHHHHHHHHHHc-cC-CCEEEeecceEcCCChhhhhhhcCcCHHHHHHHHHHHHHHHHHcCCcee
Confidence 233444444554443 22 1244445566566531 01234466677777777777665443
No 127
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=81.65 E-value=2.3 Score=48.13 Aligned_cols=59 Identities=19% Similarity=0.362 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHcCCCEEEE-ccccc-------c-----ccCCC----CCCCCCcChHHHHHHHHHHHHHcCCEEEEEc
Q 009560 226 ITIEDFNFLYRHGINTVRI-PVGWW-------I-----AFDPD----PPAPFIGGSLEALDNALSWAEAYNIKCIIDL 286 (532)
Q Consensus 226 ite~d~~~la~~G~N~VRI-pv~ww-------~-----~~~~~----~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDl 286 (532)
+||+++..||++|+|+|-| |+.-. - ++-|. +++. +.....++.+|+.|.+.||.|+||+
T Consensus 256 FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s--~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 256 FTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPES--PCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCc--ccchHHHHHHHHHHhhCCcEEehhh
Confidence 4688899999999999997 43211 0 01111 1111 2347789999999999999999995
No 128
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=81.38 E-value=17 Score=38.39 Aligned_cols=123 Identities=19% Similarity=0.186 Sum_probs=74.1
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCC-CcChHHHHHHHHHHHHHcCCE-EEEEcC-CCCCCCCCCCCCCC
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF-IGGSLEALDNALSWAEAYNIK-CIIDLH-AAPGSQNGMEHSAS 301 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~-~~~~l~~Ld~~v~~a~k~Gi~-VILDlH-~~pGsqn~~~~sg~ 301 (532)
.++++.++.++++|+|.|=|+|. .+ ++..-..+ .....+.+.++++.++++|+. |-+|+- ..||
T Consensus 97 ~l~~e~l~~l~~~G~~rvsiGvq--S~-~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPg---------- 163 (377)
T PRK08599 97 DLTKEKLQVLKDSGVNRISLGVQ--TF-NDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYALPG---------- 163 (377)
T ss_pred CCCHHHHHHHHHcCCCEEEEecc--cC-CHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCC----------
Confidence 46899999999999997766662 22 11100011 123578888999999999997 567764 3343
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCC--------C---CCcccHHHHHHHHHHHHHhhCCC
Q 009560 302 RDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAA--------T---VPLDILVPYYKQGYQIVRKYSPT 370 (532)
Q Consensus 302 ~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~--------~---~~~~~l~~~~~~~~~aIR~~~~~ 370 (532)
+..+.+.+.++.+.+ ++ -+.+..+.+.-||..+ . .+.+...+.++.+.+.+++.+-.
T Consensus 164 ----------qt~~~~~~~l~~~~~-l~-~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~ 231 (377)
T PRK08599 164 ----------QTIEDFKESLAKALA-LD-IPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFH 231 (377)
T ss_pred ----------CCHHHHHHHHHHHHc-cC-CCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 123334444444433 32 2345556677777532 0 12344566778888888888765
Q ss_pred cE
Q 009560 371 AY 372 (532)
Q Consensus 371 ~~ 372 (532)
++
T Consensus 232 ~~ 233 (377)
T PRK08599 232 QY 233 (377)
T ss_pred Ee
Confidence 44
No 129
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=81.08 E-value=17 Score=38.23 Aligned_cols=123 Identities=15% Similarity=-0.001 Sum_probs=72.9
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCC-CcChHHHHHHHHHHHHHcCCE-EEEEcCC-CCCCCCCCCCCCC
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF-IGGSLEALDNALSWAEAYNIK-CIIDLHA-APGSQNGMEHSAS 301 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~-~~~~l~~Ld~~v~~a~k~Gi~-VILDlH~-~pGsqn~~~~sg~ 301 (532)
-+|++.++.++++|+|.|-|.| ..+ ++..-... .....+.+.++++.+++.|+. |-+|+-- .||
T Consensus 95 ~~~~e~l~~l~~~GvnRiSiGv--QS~-~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPg---------- 161 (350)
T PRK08446 95 SATKAWLKGMKNLGVNRISFGV--QSF-NEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPL---------- 161 (350)
T ss_pred CCCHHHHHHHHHcCCCEEEEec--ccC-CHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCC----------
Confidence 4689999999999999666655 222 21110011 123578888999999999996 6688753 232
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCC----CcccHHHHHHHHHHHHHhhCCCcE
Q 009560 302 RDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATV----PLDILVPYYKQGYQIVRKYSPTAY 372 (532)
Q Consensus 302 ~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~----~~~~l~~~~~~~~~aIR~~~~~~~ 372 (532)
.+.+.+.+.++.+.+ .+ -+.+..+.|.=||..+-. ....-.+.+..+.+.+++.+-.++
T Consensus 162 ----------qt~~~~~~~l~~~~~-l~-~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy~~y 224 (350)
T PRK08446 162 ----------DNKKLLKEELKLAKE-LP-INHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGFKQY 224 (350)
T ss_pred ----------CCHHHHHHHHHHHHh-cC-CCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCCcEE
Confidence 223344444444443 22 234555667767754210 001224577788888888876654
No 130
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=81.03 E-value=11 Score=41.21 Aligned_cols=122 Identities=14% Similarity=0.058 Sum_probs=72.4
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCC-CcChHHHHHHHHHHHHHcCCE-EEEEcC-CCCCCCCCCCCCCC
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF-IGGSLEALDNALSWAEAYNIK-CIIDLH-AAPGSQNGMEHSAS 301 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~-~~~~l~~Ld~~v~~a~k~Gi~-VILDlH-~~pGsqn~~~~sg~ 301 (532)
.++++.++.|+++|+|.|=|.| ..+ ++..-..+ .....+.+.++++.+++.|+. |-+|+- ..||
T Consensus 149 ~lt~e~l~~L~~~G~~rvsiGv--QS~-~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPg---------- 215 (453)
T PRK13347 149 TVTAEMLQALAALGFNRASFGV--QDF-DPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPH---------- 215 (453)
T ss_pred cCCHHHHHHHHHcCCCEEEECC--CCC-CHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCC----------
Confidence 4689999999999999666555 222 21100011 113677888999999999996 778864 3343
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCC----------CCCcccHHHHHHHHHHHHHhhCCCc
Q 009560 302 RDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAA----------TVPLDILVPYYKQGYQIVRKYSPTA 371 (532)
Q Consensus 302 ~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~----------~~~~~~l~~~~~~~~~aIR~~~~~~ 371 (532)
.+.+.+.+.++.+.+ ++ -..+..|.+...|... -.+.+...+.++.+.+.+.+.+-.+
T Consensus 216 ----------qt~e~~~~tl~~~~~-l~-p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~ 283 (453)
T PRK13347 216 ----------QTVESFRETLDKVIA-LS-PDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVP 283 (453)
T ss_pred ----------CCHHHHHHHHHHHHh-cC-CCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEE
Confidence 234445555555544 22 1233345555555421 0123455677788888888887644
No 131
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=80.93 E-value=2.8 Score=43.34 Aligned_cols=136 Identities=14% Similarity=0.156 Sum_probs=75.2
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCC--------C
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEH--------S 299 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~--------s 299 (532)
.+-++.+++.||.-|=-.+. . +++..+..+.+++++++.|.+.||+||+|.-..-=.+-++.. .
T Consensus 19 ~~Yi~~~~~~Gf~~IFtsl~-----~---~~~~~~~~~~~~~ell~~Anklg~~vivDvnPsil~~l~~S~~~l~~f~e~ 90 (360)
T COG3589 19 IAYIDRMHKYGFKRIFTSLL-----I---PEEDAELYFHRFKELLKEANKLGLRVIVDVNPSILKELNISLDNLSRFQEL 90 (360)
T ss_pred HHHHHHHHHcCccceeeecc-----c---CCchHHHHHHHHHHHHHHHHhcCcEEEEEcCHHHHhhcCCChHHHHHHHHh
Confidence 46677888999997754432 1 223344689999999999999999999997621000100000 0
Q ss_pred ---CCCCCCCCCCChh-------------hHHHHHHHHHHHHHHhCCCCcEEEEEeccC-CCCCCCCcccHHHHHHHHHH
Q 009560 300 ---ASRDGTTDWPASD-------------YISQTLDVIDFLASRYAKHPALLGIELLNE-PSAATVPLDILVPYYKQGYQ 362 (532)
Q Consensus 300 ---g~~~g~~~W~~~~-------------~~~~~~~~w~~la~ry~~~p~v~g~EL~NE-P~~~~~~~~~l~~~~~~~~~ 362 (532)
|-|.. ..+...+ |.....+++..|..+-.+...+.| --|= |+.. ..-=.+++.+.-+
T Consensus 91 G~~glRlD-~gfS~eei~~ms~~~lkieLN~S~it~~l~~l~~~~an~~nl~~--cHNyYPr~y---TGLS~e~f~~kn~ 164 (360)
T COG3589 91 GVDGLRLD-YGFSGEEIAEMSKNPLKIELNASTITELLDSLLAYKANLENLEG--CHNYYPRPY---TGLSREHFKRKNE 164 (360)
T ss_pred hhhheeec-ccCCHHHHHHHhcCCeEEEEchhhhHHHHHHHHHhccchhhhhh--cccccCCcc---cCccHHHHHHHHH
Confidence 00100 1111111 111222345555554444455555 2222 4321 1223567788888
Q ss_pred HHHhhCCCcEEEEeC
Q 009560 363 IVRKYSPTAYVIVCQ 377 (532)
Q Consensus 363 aIR~~~~~~~Viv~~ 377 (532)
.++..+.....++++
T Consensus 165 ~fk~~~i~t~AFis~ 179 (360)
T COG3589 165 IFKEYNIKTAAFISS 179 (360)
T ss_pred HHHhcCCceEEEEec
Confidence 899999887776653
No 132
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=80.37 E-value=13 Score=40.42 Aligned_cols=122 Identities=13% Similarity=0.046 Sum_probs=72.9
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCC-CcChHHHHHHHHHHHHHcCC-EEEEEcCC-CCCCCCCCCCCCC
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF-IGGSLEALDNALSWAEAYNI-KCIIDLHA-APGSQNGMEHSAS 301 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~-~~~~l~~Ld~~v~~a~k~Gi-~VILDlH~-~pGsqn~~~~sg~ 301 (532)
-+|++.++.|+++|+|.|-|.|. .+ ++..-..+ .....+.+.++++.++++|+ .|-+|+-. .||
T Consensus 148 ~lt~e~l~~l~~aG~~risiGvq--S~-~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg---------- 214 (453)
T PRK09249 148 ELDLEMLDALRELGFNRLSLGVQ--DF-DPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLPK---------- 214 (453)
T ss_pred cCCHHHHHHHHHcCCCEEEECCC--CC-CHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCC----------
Confidence 46899999999999998877762 22 11100001 12367788899999999999 78888753 232
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCC----------CCCcccHHHHHHHHHHHHHhhCCCc
Q 009560 302 RDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAA----------TVPLDILVPYYKQGYQIVRKYSPTA 371 (532)
Q Consensus 302 ~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~----------~~~~~~l~~~~~~~~~aIR~~~~~~ 371 (532)
.+.+.+.+.++.+.+ .+ -..+..+.+..+|... -.+.+...+.+..+.+.+++.+-.+
T Consensus 215 ----------qt~e~~~~~l~~~~~-l~-~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ 282 (453)
T PRK09249 215 ----------QTPESFARTLEKVLE-LR-PDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQY 282 (453)
T ss_pred ----------CCHHHHHHHHHHHHh-cC-CCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 223344444444443 21 1234445555555420 1134556677778888888776544
No 133
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=78.46 E-value=4.9 Score=43.70 Aligned_cols=58 Identities=22% Similarity=0.314 Sum_probs=40.2
Q ss_pred HHHHHHHHcCCCEEEE-cccccc----ccCCCCCCCCC--cChHHHHHHHHHHHHHcCCEEEEEc
Q 009560 229 EDFNFLYRHGINTVRI-PVGWWI----AFDPDPPAPFI--GGSLEALDNALSWAEAYNIKCIIDL 286 (532)
Q Consensus 229 ~d~~~la~~G~N~VRI-pv~ww~----~~~~~~~~~~~--~~~l~~Ld~~v~~a~k~Gi~VILDl 286 (532)
+-++.|+++|+++|=| |+.... ..+.......+ -+.++.++++++.|+++||+||+|+
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 6789999999999966 332210 01111111111 2579999999999999999999997
No 134
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=78.26 E-value=23 Score=36.39 Aligned_cols=125 Identities=14% Similarity=0.175 Sum_probs=70.8
Q ss_pred cCCHHHHHHHHH---cCCCEEEEccccccccCCCCCCCC-CcChHHHHHHHHHHHHHcCCEEEEEcCC-CCCCCCCCCCC
Q 009560 225 FITIEDFNFLYR---HGINTVRIPVGWWIAFDPDPPAPF-IGGSLEALDNALSWAEAYNIKCIIDLHA-APGSQNGMEHS 299 (532)
Q Consensus 225 ~ite~d~~~la~---~G~N~VRIpv~ww~~~~~~~~~~~-~~~~l~~Ld~~v~~a~k~Gi~VILDlH~-~pGsqn~~~~s 299 (532)
.++++.++.|++ .|++ +||-++-....+ ..-..+ .....+.+.++++.++++|+.|.+++-. .||
T Consensus 120 ~l~~e~l~~L~~l~~~G~~-~~i~lGlQS~~d-~~L~~i~Rg~t~~~~~~ai~~l~~~gi~v~~~lI~GlPg-------- 189 (302)
T TIGR01212 120 CVPDEVLDLLAEYVERGYE-VWVELGLQTAHD-KTLKKINRGHDFACYVDAVKRARKRGIKVCSHVILGLPG-------- 189 (302)
T ss_pred cCCHHHHHHHHHhhhCCce-EEEEEccCcCCH-HHHHHHcCcChHHHHHHHHHHHHHcCCEEEEeEEECCCC--------
Confidence 456766666654 5885 344443322211 100011 1235677889999999999998876542 232
Q ss_pred CCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCC--------CCCcccHHHHHHHHHHHHHhhCCCc
Q 009560 300 ASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAA--------TVPLDILVPYYKQGYQIVRKYSPTA 371 (532)
Q Consensus 300 g~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~--------~~~~~~l~~~~~~~~~aIR~~~~~~ 371 (532)
+..+.+.+.++.+.+ ++ -..+..+-+.-+|..+ ......+.++++.+...++...++.
T Consensus 190 ------------et~e~~~~t~~~l~~-l~-~d~i~i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~~l~~~~ 255 (302)
T TIGR01212 190 ------------EDREEMMETAKIVSL-LD-VDGIKIHPLHVVKGTKMAKMYEKGELKTLSLEEYISLACDFLEHLPPEV 255 (302)
T ss_pred ------------CCHHHHHHHHHHHHh-cC-CCEEEEEEEEecCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCcCe
Confidence 223444555554444 22 1234445666677532 1234457888999999999988865
Q ss_pred EE
Q 009560 372 YV 373 (532)
Q Consensus 372 ~V 373 (532)
.|
T Consensus 256 ~i 257 (302)
T TIGR01212 256 VI 257 (302)
T ss_pred EE
Confidence 43
No 135
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=78.01 E-value=23 Score=37.89 Aligned_cols=123 Identities=15% Similarity=0.061 Sum_probs=75.1
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCC-CcChHHHHHHHHHHHHHcCCEEEEEcCC-CCCCCCCCCCCCCC
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF-IGGSLEALDNALSWAEAYNIKCIIDLHA-APGSQNGMEHSASR 302 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~-~~~~l~~Ld~~v~~a~k~Gi~VILDlH~-~pGsqn~~~~sg~~ 302 (532)
.++++.++.|+++|+|.|=|.| ..+.+.. -... .....+...++++.+++.+..|-+||-. .||
T Consensus 108 ~~~~e~l~~l~~~GvnRiSiGv--QS~~d~~-L~~lgR~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPg----------- 173 (390)
T PRK06582 108 SFETEKFKAFKLAGINRVSIGV--QSLKEDD-LKKLGRTHDCMQAIKTIEAANTIFPRVSFDLIYARSG----------- 173 (390)
T ss_pred cCCHHHHHHHHHCCCCEEEEEC--CcCCHHH-HHHcCCCCCHHHHHHHHHHHHHhCCcEEEEeecCCCC-----------
Confidence 4789999999999999555444 3222110 0000 1124666777888898888889999763 232
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCC-----------CCCcccHHHHHHHHHHHHHhhCCCc
Q 009560 303 DGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAA-----------TVPLDILVPYYKQGYQIVRKYSPTA 371 (532)
Q Consensus 303 ~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~-----------~~~~~~l~~~~~~~~~aIR~~~~~~ 371 (532)
...+.+.+-++.+++ + +-+.|-.|.|.=||..+ ..+.+...+.++.+.+.+++.+-.+
T Consensus 174 ---------qt~e~~~~~l~~~~~-l-~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 242 (390)
T PRK06582 174 ---------QTLKDWQEELKQAMQ-L-ATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFR 242 (390)
T ss_pred ---------CCHHHHHHHHHHHHh-c-CCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCce
Confidence 122333333333333 2 23466678888888531 1234566778888889999988766
Q ss_pred E
Q 009560 372 Y 372 (532)
Q Consensus 372 ~ 372 (532)
+
T Consensus 243 y 243 (390)
T PRK06582 243 Y 243 (390)
T ss_pred e
Confidence 5
No 136
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=77.77 E-value=22 Score=38.79 Aligned_cols=123 Identities=14% Similarity=-0.001 Sum_probs=75.7
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCC-CcChHHHHHHHHHHHHHcC-CEEEEEcCC-CCCCCCCCCCCCC
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF-IGGSLEALDNALSWAEAYN-IKCIIDLHA-APGSQNGMEHSAS 301 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~-~~~~l~~Ld~~v~~a~k~G-i~VILDlH~-~pGsqn~~~~sg~ 301 (532)
.++++.++.++++|+|.|-|.| ..+ ++..-... .....+.+.++++.++++| +.|.+||-- .||
T Consensus 160 ~~t~e~l~~l~~aGvnRiSiGV--QSf-~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPg---------- 226 (449)
T PRK09058 160 GFDDEKADAALDAGANRFSIGV--QSF-NTQVRRRAGRKDDREEVLARLEELVARDRAAVVCDLIFGLPG---------- 226 (449)
T ss_pred cCCHHHHHHHHHcCCCEEEecC--CcC-CHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCC----------
Confidence 3579999999999999776666 222 11100000 1124667778899999999 789999863 333
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCC-----------CC-CcccHHHHHHHHHHHHHhhCC
Q 009560 302 RDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAA-----------TV-PLDILVPYYKQGYQIVRKYSP 369 (532)
Q Consensus 302 ~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~-----------~~-~~~~l~~~~~~~~~aIR~~~~ 369 (532)
...+.+.+-++.+.+ ++ -..+..|.|.-||..+ .. +.+...+.|+.+.+.+++.+-
T Consensus 227 ----------qT~e~~~~~l~~~~~-l~-~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy 294 (449)
T PRK09058 227 ----------QTPEIWQQDLAIVRD-LG-LDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGW 294 (449)
T ss_pred ----------CCHHHHHHHHHHHHh-cC-CCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 112223333333333 22 2345567788888641 11 345667788899999998887
Q ss_pred CcE
Q 009560 370 TAY 372 (532)
Q Consensus 370 ~~~ 372 (532)
.++
T Consensus 295 ~~y 297 (449)
T PRK09058 295 RQL 297 (449)
T ss_pred eEE
Confidence 654
No 137
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=77.77 E-value=27 Score=37.67 Aligned_cols=122 Identities=20% Similarity=0.139 Sum_probs=77.6
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCC-CcChHHHHHHHHHHHHHcCC-EEEEEcCC-CCCCCCCCCCCCC
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF-IGGSLEALDNALSWAEAYNI-KCIIDLHA-APGSQNGMEHSAS 301 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~-~~~~l~~Ld~~v~~a~k~Gi-~VILDlH~-~pGsqn~~~~sg~ 301 (532)
.++.+-|+.+++.|+| ||+++-+.+.+.. -... .-..-+....+++.+++.|+ .|-+||-. .||
T Consensus 134 ~~~~e~~~~l~~~GvN--RiSlGVQsf~~~~-lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~---------- 200 (416)
T COG0635 134 TVEAEKFKALKEAGVN--RISLGVQSFNDEV-LKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPG---------- 200 (416)
T ss_pred CCCHHHHHHHHHcCCC--EEEeccccCCHHH-HHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC----------
Confidence 4678999999999999 9988765442210 0000 01245667788899999988 47789763 232
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCC----------CCcccHHHHHHHHHHHHHhhCCCc
Q 009560 302 RDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAAT----------VPLDILVPYYKQGYQIVRKYSPTA 371 (532)
Q Consensus 302 ~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~----------~~~~~l~~~~~~~~~aIR~~~~~~ 371 (532)
.+.+.+.+-++++.+ ++ -+.|-.|.|.-||.... .+.+...+.++.+.+.+.+.+-.+
T Consensus 201 ----------QT~~~~~~~l~~a~~-l~-pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy~~ 268 (416)
T COG0635 201 ----------QTLESLKEDLEQALE-LG-PDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGYRQ 268 (416)
T ss_pred ----------CCHHHHHHHHHHHHh-CC-CCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCCcE
Confidence 223334444444443 22 34566788999998621 123455678888999999988743
No 138
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=77.45 E-value=84 Score=33.55 Aligned_cols=139 Identities=17% Similarity=0.112 Sum_probs=75.9
Q ss_pred CHHHHHHHHHcCCCEEEEcccc---ccccCCCCCCCCCc----ChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCC
Q 009560 227 TIEDFNFLYRHGINTVRIPVGW---WIAFDPDPPAPFIG----GSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHS 299 (532)
Q Consensus 227 te~d~~~la~~G~N~VRIpv~w---w~~~~~~~~~~~~~----~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~s 299 (532)
.++-.+.+|++|++.|=|---. ....+... .+|+. -.-+.+.++++.|+|+||++-+- |... .|.++
T Consensus 83 ~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~-t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y-~S~~----DW~~p 156 (384)
T smart00812 83 PEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKY-SNWNAVDTGPKRDLVGELADAVRKRGLKFGLY-HSLF----DWFNP 156 (384)
T ss_pred HHHHHHHHHHcCCCeEEeeeeecCCccccCCCC-CCCcccCCCCCcchHHHHHHHHHHcCCeEEEE-cCHH----HhCCC
Confidence 4677888899999998662211 01111111 12211 14688999999999999999994 3321 12121
Q ss_pred CCCC---CCCC-CCChhhHHHH---HHHHHHHHHHhCCCCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCCc-
Q 009560 300 ASRD---GTTD-WPASDYISQT---LDVIDFLASRYAKHPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTA- 371 (532)
Q Consensus 300 g~~~---g~~~-W~~~~~~~~~---~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~- 371 (532)
.... .... -..+...+.. ..=++.|..+|+. .++=||.-.+- +...+ -.+++++.||+..|+.
T Consensus 157 ~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygp--d~lWfD~~~~~-----~~~~~--~~~~l~~~~~~~qP~~~ 227 (384)
T smart00812 157 LYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKP--DLLWFDGGWEA-----PDDYW--RSKEFLAWLYNLSPVKD 227 (384)
T ss_pred ccccccccccccccchhHHHHHHHHHHHHHHHHhcCCC--ceEEEeCCCCC-----ccchh--cHHHHHHHHHHhCCCCc
Confidence 1000 0000 0012233333 5667778889976 45447764431 11112 2467888899999976
Q ss_pred EEEEeCCCC
Q 009560 372 YVIVCQRIG 380 (532)
Q Consensus 372 ~Viv~~~~~ 380 (532)
-||+.++++
T Consensus 228 ~vvvn~R~~ 236 (384)
T smart00812 228 TVVVNDRWG 236 (384)
T ss_pred eEEEEcccc
Confidence 244555553
No 139
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=76.28 E-value=64 Score=35.00 Aligned_cols=159 Identities=18% Similarity=0.226 Sum_probs=87.3
Q ss_pred HHHHHHHHHcCCCEEEEccc-------cccccCCCCCCC--C------CcChHHHHHHHHHHHHHcCCEEEEEcCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVG-------WWIAFDPDPPAP--F------IGGSLEALDNALSWAEAYNIKCIIDLHAAPGS 292 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~-------ww~~~~~~~~~~--~------~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGs 292 (532)
++-++.+|++-+-.+|.|=+ |-....|....| + .+..-=-.++.++||++-|..++|-+-- ||
T Consensus 52 kDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~Gt~EF~~~~e~iGaep~~avN~--Gs 129 (501)
T COG3534 52 KDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFGTHEFMDWCELIGAEPYIAVNL--GS 129 (501)
T ss_pred HHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhcccccccccccccHHHHHHHHHHhCCceEEEEec--CC
Confidence 67889999999999999853 322222221111 1 1112223578999999999988886643 21
Q ss_pred CCCCCCCCCCCCCCCCCChhhHHHHH--------HHHHHHHHHhCC-CC-cEEEEEeccCCCCC----CCCcccHHHHHH
Q 009560 293 QNGMEHSASRDGTTDWPASDYISQTL--------DVIDFLASRYAK-HP-ALLGIELLNEPSAA----TVPLDILVPYYK 358 (532)
Q Consensus 293 qn~~~~sg~~~g~~~W~~~~~~~~~~--------~~w~~la~ry~~-~p-~v~g~EL~NEP~~~----~~~~~~l~~~~~ 358 (532)
.. ......++ .+|..+-...+. .| ++--|-|-||-.++ ....+.+..+..
T Consensus 130 rg----------------vd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~GpWq~G~~~a~EY~~~A~ 193 (501)
T COG3534 130 RG----------------VDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMDGPWQCGHKTAPEYGRLAN 193 (501)
T ss_pred cc----------------HHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEeccccCCCcccccccCHHHHHHHH
Confidence 10 11112222 245555555432 23 56678899997554 123344555566
Q ss_pred HHHHHHHhhCCCcEEEEeCCCCCCCc--hhh----hhccCCCCcEEEEeeecc
Q 009560 359 QGYQIVRKYSPTAYVIVCQRIGNADP--LEL----YQANIGLHNIVVDLHYYN 405 (532)
Q Consensus 359 ~~~~aIR~~~~~~~Viv~~~~~~~~~--~~~----~~~~~~~~nvv~s~H~Y~ 405 (532)
..-+..+=.+|+.-++++..-+++++ ..| +.. ....-..++.|+|.
T Consensus 194 e~~k~~k~~d~t~e~~v~g~a~~~n~~~~~W~~~vl~~-~~e~vD~ISlH~Y~ 245 (501)
T COG3534 194 EYRKYMKYFDPTIENVVCGSANGANPTDPNWEAVVLEE-AYERVDYISLHYYK 245 (501)
T ss_pred HHHHHHhhcCccccceEEeecCCCCCCchHHHHHHHHH-HhhhcCeEEEEEec
Confidence 66666666677655555432222222 122 111 23345689999993
No 140
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=76.24 E-value=36 Score=35.24 Aligned_cols=60 Identities=15% Similarity=0.338 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCCCEEEEcc----ccccccCCCC--------CCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPV----GWWIAFDPDP--------PAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPG 291 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv----~ww~~~~~~~--------~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pG 291 (532)
++-++.|+..++|.+-+.+ +|..-.+..| ++.| .-+.+.+++++|+++||.||..+-. ||
T Consensus 21 k~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~y---T~~di~elv~yA~~rgI~vIPEId~-PG 92 (311)
T cd06570 21 KRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYY---TQEQIREVVAYARDRGIRVVPEIDV-PG 92 (311)
T ss_pred HHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCcc---CHHHHHHHHHHHHHcCCEEEEeecC-cc
Confidence 5778889999999998877 3321111111 1122 5788999999999999999998764 55
No 141
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=76.16 E-value=24 Score=37.47 Aligned_cols=123 Identities=18% Similarity=0.092 Sum_probs=74.1
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCC-CcChHHHHHHHHHHHHHcCCEEEEEcCC-CCCCCCCCCCCCCC
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF-IGGSLEALDNALSWAEAYNIKCIIDLHA-APGSQNGMEHSASR 302 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~-~~~~l~~Ld~~v~~a~k~Gi~VILDlH~-~pGsqn~~~~sg~~ 302 (532)
.++++.++.|+++|+|.|-|.| ..+ ++..-... .....+.+.++++++++.++.|-+|+-. .||
T Consensus 101 ~i~~e~L~~l~~~GvnrislGv--QS~-~d~vL~~l~R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPg----------- 166 (380)
T PRK09057 101 SVEAGRFRGYRAAGVNRVSLGV--QAL-NDADLRFLGRLHSVAEALAAIDLAREIFPRVSFDLIYARPG----------- 166 (380)
T ss_pred cCCHHHHHHHHHcCCCEEEEec--ccC-CHHHHHHcCCCCCHHHHHHHHHHHHHhCccEEEEeecCCCC-----------
Confidence 4678999999999999666655 222 21100000 1125667778899999999999999863 233
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCC--------C---CCcccHHHHHHHHHHHHHhhCCCc
Q 009560 303 DGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAA--------T---VPLDILVPYYKQGYQIVRKYSPTA 371 (532)
Q Consensus 303 ~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~--------~---~~~~~l~~~~~~~~~aIR~~~~~~ 371 (532)
...+.+.+-++++.+ + +-+.+..+.+.=||..+ . .+.+...+.++.+.+.+++.+-.+
T Consensus 167 ---------qt~~~~~~~l~~~~~-l-~p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~G~~~ 235 (380)
T PRK09057 167 ---------QTLAAWRAELKEALS-L-AADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAAAGLPA 235 (380)
T ss_pred ---------CCHHHHHHHHHHHHh-c-CCCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCch
Confidence 112223333444443 2 23456667787777631 0 123445678888888888877644
Q ss_pred E
Q 009560 372 Y 372 (532)
Q Consensus 372 ~ 372 (532)
+
T Consensus 236 y 236 (380)
T PRK09057 236 Y 236 (380)
T ss_pred h
Confidence 4
No 142
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=75.79 E-value=60 Score=33.23 Aligned_cols=144 Identities=15% Similarity=0.103 Sum_probs=77.9
Q ss_pred HHHHHHHHHcC--CCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCC--CC-------CCC
Q 009560 228 IEDFNFLYRHG--INTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPG--SQ-------NGM 296 (532)
Q Consensus 228 e~d~~~la~~G--~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pG--sq-------n~~ 296 (532)
++.++.+++.| ++++=|-.+|..... ...-.++++.+...+.+++.+++.|+++++.+|-.-+ +. +++
T Consensus 27 ~~~~~~~~~~~iP~d~~~lD~~w~~~~~-~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g~ 105 (308)
T cd06593 27 NEFADGMRERNLPCDVIHLDCFWMKEFQ-WCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKGY 105 (308)
T ss_pred HHHHHHHHHcCCCeeEEEEecccccCCc-ceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCCe
Confidence 35566677888 556767667752211 0122345555666889999999999999998873311 10 000
Q ss_pred ---CCCCC---------CCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCC------Cccc-----H
Q 009560 297 ---EHSAS---------RDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATV------PLDI-----L 353 (532)
Q Consensus 297 ---~~sg~---------~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~------~~~~-----l 353 (532)
+..+. .....++.+|+.++-+.+..+.+.+ + +...+ +-=+|||..... .... -
T Consensus 106 ~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~-Gid~~--~~D~~e~~p~~~~~~~g~~~~~~hn~y~ 181 (308)
T cd06593 106 LVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-M-GVDCF--KTDFGERIPTDVVYYDGSDGEKMHNYYA 181 (308)
T ss_pred EEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-h-CCcEE--ecCCCCCCCccccccCCCCcceeeeHHH
Confidence 00010 0122345567777666555554433 1 11122 223677643211 1111 1
Q ss_pred HHHHHHHHHHHHhhCCC-cEEEEe
Q 009560 354 VPYYKQGYQIVRKYSPT-AYVIVC 376 (532)
Q Consensus 354 ~~~~~~~~~aIR~~~~~-~~Viv~ 376 (532)
..+.+.+++++|+..++ +++++.
T Consensus 182 ~~~~~~~~~~~~~~~~~~r~~~~~ 205 (308)
T cd06593 182 LLYNKAVYEATKEVKGEGEAVVWA 205 (308)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEE
Confidence 45667788999999876 466665
No 143
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=75.10 E-value=4.9 Score=35.82 Aligned_cols=62 Identities=26% Similarity=0.311 Sum_probs=44.5
Q ss_pred CHHHHHHHHHcCCCEEEEccccccccCCC-CCCCC-CcChHHHHHHHHHHHHHcCCE-EEEEcCCCCC
Q 009560 227 TIEDFNFLYRHGINTVRIPVGWWIAFDPD-PPAPF-IGGSLEALDNALSWAEAYNIK-CIIDLHAAPG 291 (532)
Q Consensus 227 te~d~~~la~~G~N~VRIpv~ww~~~~~~-~~~~~-~~~~l~~Ld~~v~~a~k~Gi~-VILDlH~~pG 291 (532)
+++.++.|++.|++.|++.+.- .++. -...+ ....++.+-++++.+.++|+. ++.-+...||
T Consensus 89 ~~~~l~~l~~~~~~~i~~~l~s---~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~i~~~~~ 153 (166)
T PF04055_consen 89 DEELLDELKKLGVDRIRISLES---LDEESVLRIINRGKSFERVLEALERLKEAGIPRVIIFIVGLPG 153 (166)
T ss_dssp CHHHHHHHHHTTCSEEEEEEBS---SSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSETEEEEEEEBTT
T ss_pred hHHHHHHHHhcCccEEeccccc---CCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCC
Confidence 4899999999999999998843 1111 01111 234788999999999999999 6666665553
No 144
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=74.14 E-value=8.5 Score=48.24 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCCCEEEEccccccc------cCCCCCCCCCc--ChHHHHHHHHHHHHHcCCEEEEEcC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIA------FDPDPPAPFIG--GSLEALDNALSWAEAYNIKCIIDLH 287 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~------~~~~~~~~~~~--~~l~~Ld~~v~~a~k~Gi~VILDlH 287 (532)
.+-+..|+++|+++|=|.=-+-.. .+.......++ +..+.|+++++.|+++||+||||+-
T Consensus 761 ~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV 828 (1693)
T PRK14507 761 EAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIV 828 (1693)
T ss_pred HHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 577889999999999873222100 00001111122 4789999999999999999999974
No 145
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=73.25 E-value=32 Score=32.13 Aligned_cols=130 Identities=13% Similarity=0.057 Sum_probs=76.3
Q ss_pred HHHHHHHHHcCCCEEEEccccccccC----CCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFD----PDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRD 303 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~----~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~ 303 (532)
++-.+.+++.|+..+-+.+..-.... ..+..+ .+..++.+.+.++.|++.|.+.|+- |. |. +..
T Consensus 30 ~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~-~~--g~---~~~----- 97 (213)
T PF01261_consen 30 EELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVV-HS--GR---YPS----- 97 (213)
T ss_dssp HHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEE-EC--TT---ESS-----
T ss_pred HHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceee-cC--cc---ccc-----
Confidence 45556667899996655443211111 111112 3446999999999999999998664 32 11 000
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCCc-EEEEe
Q 009560 304 GTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTA-YVIVC 376 (532)
Q Consensus 304 g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~-~Viv~ 376 (532)
......++..+.+++.++.+++.-+.+.-.+++|....+... .... .+++...+++++... .+.+.
T Consensus 98 -~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~i~~D 164 (213)
T PF01261_consen 98 -GPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSE--TPFS----VEEIYRLLEEVDSPNVGICFD 164 (213)
T ss_dssp -STTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSS--EESS----HHHHHHHHHHHTTTTEEEEEE
T ss_pred -ccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCcccc--chhh----HHHHHHHHhhcCCCcceEEEe
Confidence 001112477888888888888877666666777755554321 1111 567788888888554 44444
No 146
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=73.06 E-value=76 Score=31.52 Aligned_cols=121 Identities=14% Similarity=0.104 Sum_probs=70.9
Q ss_pred ChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccC
Q 009560 263 GSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNE 342 (532)
Q Consensus 263 ~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NE 342 (532)
..++.+++.++.|++-|.+.|+- | ||.. +.. . ..++..+.+++.++.+++.-+.+.-.+++|.++.
T Consensus 87 ~~~~~~~~~i~~a~~lGa~~i~~-~--~~~~-~~~------~----~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~~ 152 (275)
T PRK09856 87 ESLDMIKLAMDMAKEMNAGYTLI-S--AAHA-GYL------T----PPNVIWGRLAENLSELCEYAENIGMDLILEPLTP 152 (275)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEE-c--CCCC-CCC------C----CHHHHHHHHHHHHHHHHHHHHHcCCEEEEecCCC
Confidence 47899999999999999998864 2 2211 110 0 1246677888888888877666666678886642
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHhhC-CCcEEEEeCCC---CCCCchhhhhccCCCCcEEEEeeeccc
Q 009560 343 PSAATVPLDILVPYYKQGYQIVRKYS-PTAYVIVCQRI---GNADPLELYQANIGLHNIVVDLHYYNL 406 (532)
Q Consensus 343 P~~~~~~~~~l~~~~~~~~~aIR~~~-~~~~Viv~~~~---~~~~~~~~~~~~~~~~nvv~s~H~Y~~ 406 (532)
+.. ....-.+.+...+++++ |+..+.+.... .+.++...... ...-+..+|.-..
T Consensus 153 ~~~------~~~~t~~~~~~l~~~~~~~~v~~~~D~~h~~~~~~~~~~~i~~---~~~rI~~vHi~D~ 211 (275)
T PRK09856 153 YES------NVVCNANDVLHALALVPSPRLFSMVDICAPYVQAEPVMSYFDK---LGDKLRHLHIVDS 211 (275)
T ss_pred Ccc------cccCCHHHHHHHHHHcCCCcceeEEeecchhcCCCCHHHHHHH---hCCcEEEEEEEcC
Confidence 211 11112467788888887 45445554322 11222222221 2234777887654
No 147
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=72.04 E-value=5.2 Score=37.64 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=42.9
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAA 289 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~ 289 (532)
++.++..+++|...|+++.+.+........+.-.+...+.|+++.+.|+++|+.+.|-.|..
T Consensus 74 ~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 135 (213)
T PF01261_consen 74 KKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPG 135 (213)
T ss_dssp HHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSS
T ss_pred HHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccC
Confidence 78899999999999999876321111111111122367788889999999999999988864
No 148
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=71.81 E-value=21 Score=39.30 Aligned_cols=123 Identities=14% Similarity=0.170 Sum_probs=71.9
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCC-CcChHHHHHHHHHHHHHcCC-EEEEEcCC-CCCCCCCCCCCCC
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF-IGGSLEALDNALSWAEAYNI-KCIIDLHA-APGSQNGMEHSAS 301 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~-~~~~l~~Ld~~v~~a~k~Gi-~VILDlH~-~pGsqn~~~~sg~ 301 (532)
.+|++.++.|+++|+| ||.++-..+.+. .-... .....+.+.++++.|+++|+ .|-+|+-. .||
T Consensus 266 ~it~e~L~~Lk~~Gv~--RISIGvQS~~d~-vLk~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPg---------- 332 (488)
T PRK08207 266 TITEEKLEVLKKYGVD--RISINPQTMNDE-TLKAIGRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPG---------- 332 (488)
T ss_pred CCCHHHHHHHHhcCCC--eEEEcCCcCCHH-HHHHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCC----------
Confidence 5789999999999999 555543322111 00011 12467888999999999999 77788763 232
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCC---------CCCcccHHHHHHHHHHHHHhhCCCcE
Q 009560 302 RDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAA---------TVPLDILVPYYKQGYQIVRKYSPTAY 372 (532)
Q Consensus 302 ~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~---------~~~~~~l~~~~~~~~~aIR~~~~~~~ 372 (532)
+..+.+.+.++.+.+ .+ -+.+-.+.|.=+|... -.+.+...+.++.+.+..++.+-.++
T Consensus 333 ----------Et~ed~~~tl~~l~~-L~-pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l~~~Gy~~Y 400 (488)
T PRK08207 333 ----------EGLEEVKHTLEEIEK-LN-PESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWAKELGYVPY 400 (488)
T ss_pred ----------CCHHHHHHHHHHHHh-cC-cCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHHHHcCCHhh
Confidence 223444444444433 22 1223223343333221 11345567788888888888887654
No 149
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=71.49 E-value=28 Score=35.31 Aligned_cols=63 Identities=17% Similarity=0.124 Sum_probs=44.7
Q ss_pred CHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCC
Q 009560 227 TIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAA 289 (532)
Q Consensus 227 te~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~ 289 (532)
+++|++...+.|+..|+++++-........-..-.+..++...+.+++++++|+.|.+.+-..
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~ 137 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTA 137 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeE
Confidence 588999999999999999875432100000001123478888999999999999998877653
No 150
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=71.45 E-value=8.5 Score=38.18 Aligned_cols=59 Identities=22% Similarity=0.324 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHhCCC---CcEEEEEeccCCCC----------CCCCcccHHHHHHHHHHHHHhhCCCcEEE
Q 009560 313 YISQTLDVIDFLASRYAKH---PALLGIELLNEPSA----------ATVPLDILVPYYKQGYQIVRKYSPTAYVI 374 (532)
Q Consensus 313 ~~~~~~~~w~~la~ry~~~---p~v~g~EL~NEP~~----------~~~~~~~l~~~~~~~~~aIR~~~~~~~Vi 374 (532)
+++.+ +..|..+|+.. ..|-+|.|=|||.. .+++.+.+.+-+-+..++||+.+|++.|+
T Consensus 105 y~~ew---V~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~v~ 176 (239)
T PF12891_consen 105 YMDEW---VNYLVNKYGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAKVF 176 (239)
T ss_dssp EHHHH---HHHHHHHH--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSEEE
T ss_pred HHHHH---HHHHHHHHhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEe
Confidence 44444 55566666543 46888999999974 12345667777778889999999998765
No 151
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=71.42 E-value=15 Score=38.03 Aligned_cols=63 Identities=27% Similarity=0.284 Sum_probs=41.7
Q ss_pred ccCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCC-cChHHHHHHHHHHHHHcCCEEEEEcC
Q 009560 224 TFITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFI-GGSLEALDNALSWAEAYNIKCIIDLH 287 (532)
Q Consensus 224 t~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~-~~~l~~Ld~~v~~a~k~Gi~VILDlH 287 (532)
..++++.++.|+++|++ +||.++...+.+..-..-+. ....+.+.++++.++++||.|..++-
T Consensus 113 d~i~~e~L~~l~~aG~~-~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v~~~~i 176 (313)
T TIGR01210 113 EFIDEEKLEELRKIGVN-VEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYGAGVKAYLL 176 (313)
T ss_pred CcCCHHHHHHHHHcCCC-EEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcEEEEEE
Confidence 45789999999999988 35555443221110000111 22577888999999999999888764
No 152
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=71.06 E-value=59 Score=32.86 Aligned_cols=126 Identities=13% Similarity=0.077 Sum_probs=70.3
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCC-cChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCC
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFI-GGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRD 303 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~-~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~ 303 (532)
.++++.++.|+++|++.|-+.+. ..++-...+. ...++...++++.++++||.|...+ ..|- +
T Consensus 120 ~~~~e~l~~Lk~aG~~~v~i~~E----~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~--i~Gl-------~--- 183 (296)
T TIGR00433 120 LLDPEQAKRLKDAGLDYYNHNLD----TSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGG--IFGL-------G--- 183 (296)
T ss_pred CCCHHHHHHHHHcCCCEEEEccc----CCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeE--EEeC-------C---
Confidence 46899999999999999988653 1111111111 2467788889999999999976543 2221 0
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEec-cCCCCC--CCCcccHHHHHHHHHHHHHhhCCCcEEEEeCC
Q 009560 304 GTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELL-NEPSAA--TVPLDILVPYYKQGYQIVRKYSPTAYVIVCQR 378 (532)
Q Consensus 304 g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~-NEP~~~--~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~~ 378 (532)
+..+...+.++.+.+ ++ +..+.+..+ =.|..+ ........+++ +.+...|..-|+..|.+..+
T Consensus 184 --------et~~d~~~~~~~l~~-l~--~~~i~l~~l~p~~gT~l~~~~~~s~~~~~-~~ia~~r~~lp~~~i~~~~~ 249 (296)
T TIGR00433 184 --------ETVEDRIGLALALAN-LP--PESVPINFLVKIKGTPLADNKELSADDAL-KTIALARIIMPKAEIRLAGG 249 (296)
T ss_pred --------CCHHHHHHHHHHHHh-CC--CCEEEeeeeEEcCCCccCCCCCCCHHHHH-HHHHHHHHHCCcceEEEeCC
Confidence 122344455554433 22 222222222 122211 11222344444 67777888888877766543
No 153
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=70.06 E-value=24 Score=38.02 Aligned_cols=59 Identities=15% Similarity=0.258 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCCEEEE-ccccccccCCCCCC-------------CCCcChHHHHHHHHHHH-HHcCCEEEEEcC
Q 009560 228 IEDFNFLYRHGINTVRI-PVGWWIAFDPDPPA-------------PFIGGSLEALDNALSWA-EAYNIKCIIDLH 287 (532)
Q Consensus 228 e~d~~~la~~G~N~VRI-pv~ww~~~~~~~~~-------------~~~~~~l~~Ld~~v~~a-~k~Gi~VILDlH 287 (532)
++.|+.+++.|+|.|-+ |+.- ...-.++.. +-.+..++.+.++|..+ +++||.+|.|+.
T Consensus 25 ~~~l~~~~~~GYNmIHftPlq~-~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV 98 (423)
T PF14701_consen 25 EKHLKVISEKGYNMIHFTPLQE-RGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVV 98 (423)
T ss_pred HHHHHHHHHcCCcEEEeccccc-CCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEe
Confidence 78999999999999987 3311 111011110 00123578899999887 579999999986
No 154
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=69.81 E-value=14 Score=41.83 Aligned_cols=60 Identities=22% Similarity=0.069 Sum_probs=41.9
Q ss_pred HHHHHHHHHcCCCEEEEcccccc-----c-cCCCCCC-------CCCc--ChHHHHHHHHHHHHHcCCEEEEEcC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWI-----A-FDPDPPA-------PFIG--GSLEALDNALSWAEAYNIKCIIDLH 287 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~-----~-~~~~~~~-------~~~~--~~l~~Ld~~v~~a~k~Gi~VILDlH 287 (532)
+...+.|+++|++.|=+.=.+-. . ..|.... .+++ +.++.++++++.|.++||+||+|+-
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 67889999999999988432211 0 0011001 1122 5799999999999999999999974
No 155
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=69.27 E-value=55 Score=35.66 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHcCCEEEEEcCCCCC
Q 009560 264 SLEALDNALSWAEAYNIKCIIDLHAAPG 291 (532)
Q Consensus 264 ~l~~Ld~~v~~a~k~Gi~VILDlH~~pG 291 (532)
.-+.+.++|+.|+++||.||..+- .||
T Consensus 95 T~~di~eiv~yA~~rgI~VIPEID-~PG 121 (445)
T cd06569 95 SRADYIEILKYAKARHIEVIPEID-MPG 121 (445)
T ss_pred CHHHHHHHHHHHHHcCCEEEEccC-Cch
Confidence 578899999999999999998764 244
No 156
>PLN03244 alpha-amylase; Provisional
Probab=68.97 E-value=71 Score=37.28 Aligned_cols=111 Identities=14% Similarity=0.242 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHcCCEEEEEc---CCCCCCC----------CCCCCCCCCCCCCCCC-------ChhhHHHHHHHHHH
Q 009560 264 SLEALDNALSWAEAYNIKCIIDL---HAAPGSQ----------NGMEHSASRDGTTDWP-------ASDYISQTLDVIDF 323 (532)
Q Consensus 264 ~l~~Ld~~v~~a~k~Gi~VILDl---H~~pGsq----------n~~~~sg~~~g~~~W~-------~~~~~~~~~~~w~~ 323 (532)
..+.|+++|+.|.++||.||||+ |..+... ..+.+.+.+.....|. +++.++..++..+.
T Consensus 439 TPeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~y 518 (872)
T PLN03244 439 TPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNW 518 (872)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHH
Confidence 57889999999999999999995 3333211 0111222111123454 35667777777777
Q ss_pred HHHHhCCC-------CcEEEEE--e--cc----C-CCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEe
Q 009560 324 LASRYAKH-------PALLGIE--L--LN----E-PSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVC 376 (532)
Q Consensus 324 la~ry~~~-------p~v~g~E--L--~N----E-P~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~ 376 (532)
..++|.=+ .+++-.+ + .+ | |.. ..+ ..-..|++.+-.+|++..|+.++|-+
T Consensus 519 WleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~-~~d-~dAv~fL~laN~~ih~~~P~~itIAE 585 (872)
T PLN03244 519 WITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQ-YVD-KDALMYLILANEILHALHPKIITIAE 585 (872)
T ss_pred HHHHhCcCcceeecchhheeeccccccccCCccccccc-cCC-chHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 77776521 1111101 1 01 1 111 112 34556888899999999999877776
No 157
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=68.87 E-value=73 Score=33.16 Aligned_cols=141 Identities=18% Similarity=0.175 Sum_probs=88.5
Q ss_pred hhccccCCHHHHHHHHHcCCC-EEEEccccc-ccc------C----------CCCC----CCC--CcChHHHHHHHHHH-
Q 009560 220 RHRNTFITIEDFNFLYRHGIN-TVRIPVGWW-IAF------D----------PDPP----APF--IGGSLEALDNALSW- 274 (532)
Q Consensus 220 ~hw~t~ite~d~~~la~~G~N-~VRIpv~ww-~~~------~----------~~~~----~~~--~~~~l~~Ld~~v~~- 274 (532)
+||..++ ++-++.|++.|+. .|=||+--+ ... + ..+. ..| .+..++.+-+.|+.
T Consensus 98 ry~~P~i-~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~~~~~al~~~~~~~~i~~I~~~~~~p~yI~a~a~~I~~~ 176 (320)
T COG0276 98 RYGPPFI-EEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVDELARALKELRGQPKISTIPDYYDEPLYIEALADSIREK 176 (320)
T ss_pred cCCCCcH-HHHHHHHHHcCCCeEEEEECCcccccccHHHHHHHHHHHHHhcCCCCceEEecCccCChHHHHHHHHHHHHH
Confidence 4566665 6889999999994 555666221 100 0 0000 011 23467777776654
Q ss_pred HHHc---CCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhC--CCCcEEEEEeccCCCCCCCC
Q 009560 275 AEAY---NIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYA--KHPALLGIELLNEPSAATVP 349 (532)
Q Consensus 275 a~k~---Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~--~~p~v~g~EL~NEP~~~~~~ 349 (532)
.++. +..+|++.|..|=+... .| +.+.++..+--+-|+++.+ .....++|+--.=|
T Consensus 177 ~~~~~~~~~~llfSaHglP~~~~~-------~G------DpY~~q~~~t~~li~e~lg~~~~~~~~~~QS~~G~------ 237 (320)
T COG0276 177 LAKHPRDDDVLLFSAHGLPKRYID-------EG------DPYPQQCQETTRLIAEALGLPEEEYDLTFQSRFGP------ 237 (320)
T ss_pred HHhcCCCCeEEEEecCCCchhhhh-------cC------CchHHHHHHHHHHHHHHcCCCchheeEEeecCCCC------
Confidence 4444 69999999998743211 01 2356667777777888776 55677888873322
Q ss_pred cccHHHHHHHHHHHHHhhCCCcEEEEeCCCC
Q 009560 350 LDILVPYYKQGYQIVRKYSPTAYVIVCQRIG 380 (532)
Q Consensus 350 ~~~l~~~~~~~~~aIR~~~~~~~Viv~~~~~ 380 (532)
.+.+..+.++.++.+.+.+.++++++..+|-
T Consensus 238 ~~WL~P~t~~~l~~L~~~g~k~iiv~pigFv 268 (320)
T COG0276 238 EPWLQPYTDDLLEELGEKGVKKIIVVPIGFV 268 (320)
T ss_pred CCCCCCCHHHHHHHHHhcCCCeEEEECCchh
Confidence 2345666778888888888888999888874
No 158
>PRK14565 triosephosphate isomerase; Provisional
Probab=68.65 E-value=92 Score=30.97 Aligned_cols=132 Identities=14% Similarity=0.072 Sum_probs=73.6
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTD 307 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~ 307 (532)
|=..+.|+++|++.+=|.=+ +.. .+-.+.=+.+.+=+..|.++||.+|+..-... +
T Consensus 75 evS~~mLkd~G~~~viiGHS-----ERR---~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE~~------e---------- 130 (237)
T PRK14565 75 EISAKMLKECGCSYVILGHS-----ERR---STFHETDSDIRLKAESAIESGLIPIICVGETL------E---------- 130 (237)
T ss_pred ccCHHHHHHcCCCEEEECcc-----ccc---CcCCcCHHHHHHHHHHHHHCCCEEEEEcCCCH------H----------
Confidence 45567889999998866321 111 22222233444445889999999999875310 0
Q ss_pred CCChhhHHHHH-HHHHHHHHHhCCC-CcEEEEEeccCCCCC-CCCcccHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCc
Q 009560 308 WPASDYISQTL-DVIDFLASRYAKH-PALLGIELLNEPSAA-TVPLDILVPYYKQGYQIVRKYSPTAYVIVCQRIGNADP 384 (532)
Q Consensus 308 W~~~~~~~~~~-~~w~~la~ry~~~-p~v~g~EL~NEP~~~-~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~~~~~~~~ 384 (532)
......+. -+.+|+..-+.+. +-+++| ||.+. +.....-.+..++++..||+...+..|+.++.....+.
T Consensus 131 ---~r~~~~~~~~~~~Ql~~~l~~~~~ivIAY----EPvWAIGtG~~a~~e~i~~~~~~Ir~~~~~~~IlYGGSV~~~N~ 203 (237)
T PRK14565 131 ---DRENGMTKDVLLEQCSNCLPKHGEFIIAY----EPVWAIGGSTIPSNDAIAEAFEIIRSYDSKSHIIYGGSVNQENI 203 (237)
T ss_pred ---HHHccChHHHHHHHHHHHhcCCCCEEEEE----CCHHHhCCCCCCCHHHHHHHHHHHHHhCCCceEEEcCccCHhhH
Confidence 00111111 2233444434332 344444 67652 11223345678999999999887778888865533334
Q ss_pred hhhhhc
Q 009560 385 LELYQA 390 (532)
Q Consensus 385 ~~~~~~ 390 (532)
.+++..
T Consensus 204 ~~l~~~ 209 (237)
T PRK14565 204 RDLKSI 209 (237)
T ss_pred HHHhcC
Confidence 555543
No 159
>PRK09936 hypothetical protein; Provisional
Probab=67.93 E-value=64 Score=33.02 Aligned_cols=138 Identities=17% Similarity=0.186 Sum_probs=72.7
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCC-
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTT- 306 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~- 306 (532)
++-++.+++.||+++=+- |-...+. .| .+.-..|.+.++.|++.||+|+|-|+..|.. |.+- ..++..
T Consensus 41 q~~~~~~~~~G~~tLivQ--Wt~yG~~----~f-g~~~g~La~~l~~A~~~Gl~v~vGL~~Dp~y---~q~~-~~d~~~~ 109 (296)
T PRK09936 41 QGLWSQLRLQGFDTLVVQ--WTRYGDA----DF-GGQRGWLAKRLAAAQQAGLKLVVGLYADPEF---FMHQ-KQDGAAL 109 (296)
T ss_pred HHHHHHHHHcCCcEEEEE--eeeccCC----Cc-ccchHHHHHHHHHHHHcCCEEEEcccCChHH---HHHH-hcCchhH
Confidence 688899999999998653 3222121 22 1124568889999999999999999987642 1111 011100
Q ss_pred -CCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhh-C-CCcEEEEeCCC
Q 009560 307 -DWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKY-S-PTAYVIVCQRI 379 (532)
Q Consensus 307 -~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~-~-~~~~Viv~~~~ 379 (532)
.|. .....+..+.++.+.++..-. +-||=+==|++......+.-++.......++++. + +.++|-|+..+
T Consensus 110 ~~yl-~~~l~~~~~qa~~~~~~~~~~--v~GWYiP~ElDd~~W~~~~rR~~L~~~L~~~~~~l~~~~kPv~ISay~ 182 (296)
T PRK09936 110 ESYL-NRQLGASLQQARLWSAAWGVP--VDGWYLPAELDDLNWRDEARRQPLLTWLNAAQRLIDVSAKPVHISAFF 182 (296)
T ss_pred HHHH-HHHHHHHHHHHHHHHhccCCC--CCeEEeeeccchhcccCHHHHHHHHHHHHHHHHhCCCCCCCeEEEeec
Confidence 000 012233334444444444332 3566676677642222222222233333333333 2 35677777654
No 160
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=67.62 E-value=27 Score=38.05 Aligned_cols=121 Identities=13% Similarity=0.078 Sum_probs=68.3
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCC-cChHHHHHHHHHHHHHcCCE-EEEEcCC-CCCCCCCCCCCCC
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFI-GGSLEALDNALSWAEAYNIK-CIIDLHA-APGSQNGMEHSAS 301 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~-~~~l~~Ld~~v~~a~k~Gi~-VILDlH~-~pGsqn~~~~sg~ 301 (532)
.++++.++.|+++|+|.|-|.|. .+ ++..-..+. ....+.+.++++.++++|+. |-+|+-. .||
T Consensus 148 ~l~~e~l~~lk~~G~~risiGvq--S~-~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg---------- 214 (455)
T TIGR00538 148 YITKDVIDALRDEGFNRLSFGVQ--DF-NKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPK---------- 214 (455)
T ss_pred cCCHHHHHHHHHcCCCEEEEcCC--CC-CHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCC----------
Confidence 35899999999999997766652 22 111000111 13567788999999999996 6678653 333
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCC----------CCCCcccHHHHHHHHHHHHHhhCCC
Q 009560 302 RDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSA----------ATVPLDILVPYYKQGYQIVRKYSPT 370 (532)
Q Consensus 302 ~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~----------~~~~~~~l~~~~~~~~~aIR~~~~~ 370 (532)
.+.+.+.+.++.+.+ ++ -..+..|.+.=+|.. .-.+.+...+.++.+.+.+++.+-.
T Consensus 215 ----------qt~e~~~~tl~~~~~-l~-~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy~ 281 (455)
T TIGR00538 215 ----------QTKESFAKTLEKVAE-LN-PDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGYQ 281 (455)
T ss_pred ----------CCHHHHHHHHHHHHh-cC-CCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCCE
Confidence 223344444444443 22 122333434223321 0113455667777787777777653
No 161
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=67.42 E-value=8.7 Score=40.55 Aligned_cols=53 Identities=17% Similarity=0.180 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
++-++.++++||..|=..+. .|+ .-.+..++.+.+++++|+++||+||+|+..
T Consensus 17 ~~yi~~a~~~Gf~~iFTSL~-----ipe---~~~~~~~~~~~~l~~~a~~~~~~v~~Disp 69 (357)
T PF05913_consen 17 KAYIEKAAKYGFKRIFTSLH-----IPE---DDPEDYLERLKELLKLAKELGMEVIADISP 69 (357)
T ss_dssp HHHHHHHHCTTEEEEEEEE-----------------HHHHHHHHHHHHHHCT-EEEEEE-C
T ss_pred HHHHHHHHHCCCCEEECCCC-----cCC---CCHHHHHHHHHHHHHHHHHCCCEEEEECCH
Confidence 56788888999998755542 121 113457999999999999999999999874
No 162
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=67.32 E-value=1.3e+02 Score=29.61 Aligned_cols=121 Identities=12% Similarity=0.085 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCC
Q 009560 264 SLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEP 343 (532)
Q Consensus 264 ~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP 343 (532)
..+.++++++.|++.|..+|.- + +|.. ...+..++..+.+.+.++.+++..++..-.+++|.+|.+
T Consensus 83 ~~~~~~~~i~~a~~lga~~i~~-~--~g~~-----------~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~ 148 (258)
T PRK09997 83 FRDGVAAAIRYARALGNKKINC-L--VGKT-----------PAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHF 148 (258)
T ss_pred HHHHHHHHHHHHHHhCCCEEEE-C--CCCC-----------CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCc
Confidence 4678999999999999997753 2 2211 011222455677888888888877777777899998864
Q ss_pred CCCCCCcccHHHHHHHHHHHHHhhCCC-cEEEEeCCCC---CCCchhhhhccCCCCcEEEEeeecc
Q 009560 344 SAATVPLDILVPYYKQGYQIVRKYSPT-AYVIVCQRIG---NADPLELYQANIGLHNIVVDLHYYN 405 (532)
Q Consensus 344 ~~~~~~~~~l~~~~~~~~~aIR~~~~~-~~Viv~~~~~---~~~~~~~~~~~~~~~nvv~s~H~Y~ 405 (532)
..+.. .-.-.+.+...++++++. ..+.+..++. ..++.++... ...-+.-+|.-.
T Consensus 149 ~~~~~----~~~~~~~~~~ll~~v~~~~v~l~~D~~h~~~~g~~~~~~~~~---~~~ri~~vHikD 207 (258)
T PRK09997 149 DIPGF----HLTGTRQALKLIDDVGCCNLKIQYDIYHMQRMEGELTNTMTQ---WADKIGHLQIAD 207 (258)
T ss_pred CCCCC----ccCCHHHHHHHHHHhCCCCEEEEeEHHHhhhcCCcHHHHHHH---hhCcccEEEeCC
Confidence 32111 112234566678888754 4455553321 1234344332 123355667754
No 163
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.21 E-value=31 Score=37.11 Aligned_cols=149 Identities=15% Similarity=0.096 Sum_probs=86.1
Q ss_pred HHHHHHHHHcCCCEEEEcccccc--ccC----C-CCCCCC---CcChHHHHHHHHHHHHHcCCEEEEEcC----------
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWI--AFD----P-DPPAPF---IGGSLEALDNALSWAEAYNIKCIIDLH---------- 287 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~--~~~----~-~~~~~~---~~~~l~~Ld~~v~~a~k~Gi~VILDlH---------- 287 (532)
.+.++.++++|||+|=.-|.-.. +.. | ...-|. .....+-|..+|+.|+|+||.|+-=+-
T Consensus 67 ~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~~a~~~s~ 146 (418)
T COG1649 67 KDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYRMAPPTSP 146 (418)
T ss_pred HHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhhcccCCCCCh
Confidence 57889999999999966551110 111 0 011111 234788999999999999999986211
Q ss_pred --CC-CC-C---CCCCCCCCCCCC--CCCCCC---hhhHHHHHHHHHHHHHHhCCCC----cEEE---------------
Q 009560 288 --AA-PG-S---QNGMEHSASRDG--TTDWPA---SDYISQTLDVIDFLASRYAKHP----ALLG--------------- 336 (532)
Q Consensus 288 --~~-pG-s---qn~~~~sg~~~g--~~~W~~---~~~~~~~~~~w~~la~ry~~~p----~v~g--------------- 336 (532)
.. |. . +.++-..- ..+ ...|.+ |+.++...++...++++|.-+. .+..
T Consensus 147 ~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y 225 (418)
T COG1649 147 LTKRHPHWLTTKRPGWVYVR-HQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLY 225 (418)
T ss_pred hHhhCCCCcccCCCCeEEEe-cCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHH
Confidence 00 00 0 00010000 011 234554 5888889999999999986432 2221
Q ss_pred -EEeccCCCCCC-----CCcccHHHHHHHHHHHHHhhCCCcEEEEeC
Q 009560 337 -IELLNEPSAAT-----VPLDILVPYYKQGYQIVRKYSPTAYVIVCQ 377 (532)
Q Consensus 337 -~EL~NEP~~~~-----~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~ 377 (532)
+|-.+.|-... .-.+...++++++..+||++.|+..+-+++
T Consensus 226 ~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavKp~v~~svsp 272 (418)
T COG1649 226 RYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVKPNVKFSVSP 272 (418)
T ss_pred HhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhCCCeEEEEcc
Confidence 11112221110 012346678889999999999998877776
No 164
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=65.89 E-value=1.7e+02 Score=30.50 Aligned_cols=69 Identities=9% Similarity=0.106 Sum_probs=39.7
Q ss_pred hhhHHHHHHHHHHHHHH-hCCC--CcEEEEEeccCCCCC-CCCcccHHHHHHHHHHHHHhhCCCcEEEEeCCC
Q 009560 311 SDYISQTLDVIDFLASR-YAKH--PALLGIELLNEPSAA-TVPLDILVPYYKQGYQIVRKYSPTAYVIVCQRI 379 (532)
Q Consensus 311 ~~~~~~~~~~w~~la~r-y~~~--p~v~g~EL~NEP~~~-~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~~~ 379 (532)
++-++.+.+.++.+.++ |.+- ..+=+|+..+|+..+ ....+.+.++...+.+.+|+..|+..||+..++
T Consensus 143 ~~W~~il~~rl~~l~~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~NnG~ 215 (315)
T TIGR01370 143 PEWKAIAFSYLDRVIAQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIPQNGE 215 (315)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEecCch
Confidence 34444444445544332 3221 234455555554321 123456788888888889999999877765543
No 165
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=65.31 E-value=8 Score=39.01 Aligned_cols=62 Identities=11% Similarity=0.176 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHcCCCEEEEcccccccc-CCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 226 ITIEDFNFLYRHGINTVRIPVGWWIAF-DPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 226 ite~d~~~la~~G~N~VRIpv~ww~~~-~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
.+.+|++...+.|++.|||.++-.... ...-... .+..++.+.++++.|+++|++|-+.+-.
T Consensus 72 ~~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~-~~e~~~~~~~~i~~a~~~G~~v~~~~ed 134 (262)
T cd07948 72 CHMDDARIAVETGVDGVDLVFGTSPFLREASHGKS-ITEIIESAVEVIEFVKSKGIEVRFSSED 134 (262)
T ss_pred CCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 358999999999999999977432110 0000111 2457888999999999999999998754
No 166
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=65.10 E-value=78 Score=32.57 Aligned_cols=91 Identities=12% Similarity=0.170 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Q 009560 265 LEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPS 344 (532)
Q Consensus 265 l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~ 344 (532)
.+.+.+-|+.|++.|++|+|.+-...|+ ....++..++++++-+..+.+.|. +=|+|+-=|..
T Consensus 59 ~~~~~~~i~~~q~~G~KVllSiGG~~~~-------------~~~~~~~~~~~fa~sl~~~~~~~g----~DGiDiD~E~~ 121 (312)
T cd02871 59 PAEFKADIKALQAKGKKVLISIGGANGH-------------VDLNHTAQEDNFVDSIVAIIKEYG----FDGLDIDLESG 121 (312)
T ss_pred hHHHHHHHHHHHHCCCEEEEEEeCCCCc-------------cccCCHHHHHHHHHHHHHHHHHhC----CCeEEEecccC
Confidence 4567888899999999999998543211 112245667777776666666664 55777777753
Q ss_pred CCCCCcccHHHHHHHHHHHHHhhCCCcE
Q 009560 345 AATVPLDILVPYYKQGYQIVRKYSPTAY 372 (532)
Q Consensus 345 ~~~~~~~~l~~~~~~~~~aIR~~~~~~~ 372 (532)
........-..-+.++++.+|+.-+...
T Consensus 122 ~~~~~~~~~~~~~~~~lk~lr~~~~~~~ 149 (312)
T cd02871 122 SNPLNATPVITNLISALKQLKDHYGPNF 149 (312)
T ss_pred CccCCcHHHHHHHHHHHHHHHHHcCCCe
Confidence 2211111233445566677776543333
No 167
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=64.21 E-value=29 Score=35.13 Aligned_cols=49 Identities=12% Similarity=0.001 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 226 ITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 226 ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
+.++|++...+.|+..|||-++-. .++.+...++.++++|+.|...+..
T Consensus 92 ~~~~di~~~~~~g~~~iri~~~~~--------------~~~~~~~~i~~ak~~G~~v~~~i~~ 140 (275)
T cd07937 92 VVELFVEKAAKNGIDIFRIFDALN--------------DVRNLEVAIKAVKKAGKHVEGAICY 140 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEeecCC--------------hHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 468999999999999999954321 2678999999999999999887653
No 168
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=64.08 E-value=1.6e+02 Score=29.38 Aligned_cols=118 Identities=13% Similarity=0.070 Sum_probs=69.4
Q ss_pred ChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccC
Q 009560 263 GSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNE 342 (532)
Q Consensus 263 ~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NE 342 (532)
..++.+.++++.|++-|..+|+ ++. ... ..+ . ..++..+.+++.++.+++.-++..-.+++|..+.
T Consensus 91 ~~~~~~~~~i~~a~~lG~~~v~-~~~---~~~---~~~----~---~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~~ 156 (279)
T TIGR00542 91 QGLEIMEKAIQLARDLGIRTIQ-LAG---YDV---YYE----E---HDEETRRRFREGLKEAVELAARAQVTLAVEIMDT 156 (279)
T ss_pred HHHHHHHHHHHHHHHhCCCEEE-ecC---ccc---ccC----c---CCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCC
Confidence 4688899999999999999885 332 100 000 0 0245678888899999888877777888997655
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHhhCCC-cEEEEeCCC---CCCCchhhhhccCCCCcEEEEeeeccc
Q 009560 343 PSAATVPLDILVPYYKQGYQIVRKYSPT-AYVIVCQRI---GNADPLELYQANIGLHNIVVDLHYYNL 406 (532)
Q Consensus 343 P~~~~~~~~~l~~~~~~~~~aIR~~~~~-~~Viv~~~~---~~~~~~~~~~~~~~~~nvv~s~H~Y~~ 406 (532)
|... .. .++.+.+++++.. .-+.+..+. ...++.+.... ...-+.-+|.-..
T Consensus 157 ~~~~-----t~----~~~~~li~~v~~~~v~~~~D~~h~~~~~~~~~~~i~~---~~~~i~~vHikD~ 212 (279)
T TIGR00542 157 PFMS-----SI----SKWLKWDHYLNSPWFTLYPDIGNLSAWDNDVQMELQL---GIDKIVAIHLKDT 212 (279)
T ss_pred chhc-----CH----HHHHHHHHHcCCCceEEEeCcChhhhccCCHHHHHHH---hhhhEEEEEeCCC
Confidence 4321 12 2445556777644 334443321 11233222221 1235777888654
No 169
>KOG4518 consensus Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=63.52 E-value=98 Score=29.96 Aligned_cols=128 Identities=14% Similarity=0.189 Sum_probs=77.3
Q ss_pred HHHHHHHHcCCCEEEEccccccccC----------------CCCCCCCCc-------------ChHHHHHHHHHHHHHcC
Q 009560 229 EDFNFLYRHGINTVRIPVGWWIAFD----------------PDPPAPFIG-------------GSLEALDNALSWAEAYN 279 (532)
Q Consensus 229 ~d~~~la~~G~N~VRIpv~ww~~~~----------------~~~~~~~~~-------------~~l~~Ld~~v~~a~k~G 279 (532)
+-+...++.||..|-||+++-.-.+ ..++..++. ..-+.||.+|++|++-|
T Consensus 20 ~r~~~a~~~gf~~vev~~p~~e~a~~~~~~~~~~~~~~~~~~a~~~~~d~~~~G~~svpg~~k~FR~~Ld~ai~yAkalg 99 (264)
T KOG4518|consen 20 QRYGAAASAGFKLVEVSIPYTEPAEKLREAADEYHLKHTLINAPPGNWDDGFRGLASVPGAKKEFRKSLDTAIEYAKALG 99 (264)
T ss_pred HHHHHHHhCCceEEEecCCCCChHHHHHHhhhcchhhhhhccCCCCChhhhccCcccCCchHHHHHHHHHHHHHHHHHhC
Confidence 3445667899999999998732111 012222221 13567899999999988
Q ss_pred CEEE-EEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCCcccHHHHHH
Q 009560 280 IKCI-IDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVPLDILVPYYK 358 (532)
Q Consensus 280 i~VI-LDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~~~~~ 358 (532)
-.=| |..--.++.+. -.+.-+-+.+=+++-|+.++.+.-|--+|.+|--. .+.....-|+
T Consensus 100 C~rIHlmAG~~k~g~d---------------~~~~~~ty~eNlr~AA~~l~~~kligliEPINkyt----~PgY~ln~y~ 160 (264)
T KOG4518|consen 100 CCRIHLMAGIPKSGDD---------------LENAHQTYSENLRFAAEKLKEHKLIGLIEPINKYT----IPGYHLNNYE 160 (264)
T ss_pred CceEEEeccCCCCCch---------------HHHHHHHHHHHHHHHHHHhhhhceeeeecchhccc----CcchhcCCHH
Confidence 6433 22111121110 02344556677788888898877666677777432 2334445568
Q ss_pred HHHHHHHhhCCCcEEEE
Q 009560 359 QGYQIVRKYSPTAYVIV 375 (532)
Q Consensus 359 ~~~~aIR~~~~~~~Viv 375 (532)
++.+.+..+..+.+-+.
T Consensus 161 ~Aa~Ilq~v~~~Nlqlq 177 (264)
T KOG4518|consen 161 DAADILQMVQSNNLQLQ 177 (264)
T ss_pred HHHHHHHHhcCCceehh
Confidence 88889988887766544
No 170
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=62.65 E-value=25 Score=35.34 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
++-++..+++|.+.||++-.. ...+. ..........+.|.++++.|+++|+++.|-.|.
T Consensus 97 ~~~i~~a~~lG~~~v~~~~~~-~~~~~-~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~ 155 (279)
T TIGR00542 97 EKAIQLARDLGIRTIQLAGYD-VYYEE-HDEETRRRFREGLKEAVELAARAQVTLAVEIMD 155 (279)
T ss_pred HHHHHHHHHhCCCEEEecCcc-cccCc-CCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCC
Confidence 788999999999999986321 00011 111112336778889999999999999998773
No 171
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=62.52 E-value=19 Score=37.28 Aligned_cols=57 Identities=21% Similarity=0.222 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCC----CCCCCcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDP----PAPFIGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~----~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
.+.++++++.|+|+.=. -.-.||-. -++|.++.++.|.++++.|++.|+..+..+|-
T Consensus 18 ~~l~~f~~~~kmN~YiY----APKdDpyhr~~Wre~Yp~~el~~l~~L~~~a~~~~V~Fv~aisP 78 (306)
T PF07555_consen 18 LDLIRFLGRYKMNTYIY----APKDDPYHRSKWREPYPEEELAELKELADAAKANGVDFVYAISP 78 (306)
T ss_dssp HHHHHHHHHTT--EEEE------TT-TTTTTTTTS---HHHHHHHHHHHHHHHHTT-EEEEEEBG
T ss_pred HHHHHHHHHcCCceEEE----CCCCChHHHhhhcccCCHHHHHHHHHHHHHHHHcCCEEEEEECc
Confidence 58899999999997632 00011111 14666778999999999999999999999993
No 172
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=62.24 E-value=98 Score=32.79 Aligned_cols=134 Identities=16% Similarity=0.195 Sum_probs=76.4
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCC----cChHHHHHHHHHHHHHcCCE-EEEEcCCCCCCCCCCCCC
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFI----GGSLEALDNALSWAEAYNIK-CIIDLHAAPGSQNGMEHS 299 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~----~~~l~~Ld~~v~~a~k~Gi~-VILDlH~~pGsqn~~~~s 299 (532)
.++++.++.|+++|++.|-+.+. ..++.-...+. ...++..-+.++.|++.||. |=.++--
T Consensus 160 ~lt~e~l~~Lk~aGv~r~~i~lE---T~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~----------- 225 (371)
T PRK09240 160 PLSEEEYAELVELGLDGVTVYQE---TYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALL----------- 225 (371)
T ss_pred CCCHHHHHHHHHcCCCEEEEEEe---cCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEe-----------
Confidence 36899999999999995555441 11111000111 22567777789999999996 5343321
Q ss_pred CCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCC-Ccc-cHHHHHHHHHHHHHhhCCCcEEEEeC
Q 009560 300 ASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATV-PLD-ILVPYYKQGYQIVRKYSPTAYVIVCQ 377 (532)
Q Consensus 300 g~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~-~~~-~l~~~~~~~~~aIR~~~~~~~Viv~~ 377 (532)
|-.+| .+.+-.++..++.|-.+|...+.-+-+..++ |..... +.. --..-+.+.+.+.|-.-|+.-|.+++
T Consensus 226 ----Glge~--~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~-P~~g~~~~~~~~~~~e~l~~ia~~Rl~lP~~~i~~s~ 298 (371)
T PRK09240 226 ----GLSDW--RTDALMTALHLRYLQRKYWQAEYSISFPRLR-PCTGGIEPASIVSDKQLVQLICAFRLFLPDVEISLST 298 (371)
T ss_pred ----cCCcc--HHHHHHHHHHHHHHHHhCCCCceeeecCccc-cCCCCCCCCCCCCHHHHHHHHHHHHHHCcccccEEec
Confidence 11122 2444455666777777888765433221121 221111 111 11233457888899999999998886
Q ss_pred CC
Q 009560 378 RI 379 (532)
Q Consensus 378 ~~ 379 (532)
+-
T Consensus 299 g~ 300 (371)
T PRK09240 299 RE 300 (371)
T ss_pred CC
Confidence 54
No 173
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=61.20 E-value=66 Score=33.93 Aligned_cols=90 Identities=14% Similarity=0.115 Sum_probs=55.4
Q ss_pred HHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCC
Q 009560 270 NALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVP 349 (532)
Q Consensus 270 ~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~ 349 (532)
+++..|+++|++|++.- ..+ . ..-.+++.++++++-+-.++++|.=+.--+-||-.... ...+
T Consensus 68 ~~~~~A~~~~v~v~~~~-~~~-----~---------~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~--~~~d 130 (358)
T cd02875 68 ELLCYAHSKGVRLVLKG-DVP-----L---------EQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITK--GSPE 130 (358)
T ss_pred HHHHHHHHcCCEEEEEC-ccC-----H---------HHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCC--Ccch
Confidence 78899999999999862 111 0 01125788888887777777777422212223322211 1124
Q ss_pred cccHHHHHHHHHHHHHhhCCCcEEEEe
Q 009560 350 LDILVPYYKQGYQIVRKYSPTAYVIVC 376 (532)
Q Consensus 350 ~~~l~~~~~~~~~aIR~~~~~~~Viv~ 376 (532)
.+.+..+++++.+++++.++...|.+.
T Consensus 131 ~~~~t~llkelr~~l~~~~~~~~Lsva 157 (358)
T cd02875 131 YYALTELVKETTKAFKKENPGYQISFD 157 (358)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 567888888888888887665555553
No 174
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=61.19 E-value=24 Score=35.28 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
+.-++..+++|.+.||++- ......+.+ +...+...+.|+++.+.|+++||++.+-.|.
T Consensus 97 ~~~i~~a~~lG~~~v~~~~-~~~~~~~~~-~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~ 155 (284)
T PRK13210 97 KKAIRLAQDLGIRTIQLAG-YDVYYEEKS-EETRQRFIEGLAWAVEQAAAAQVMLAVEIMD 155 (284)
T ss_pred HHHHHHHHHhCCCEEEECC-ccccccccc-HHHHHHHHHHHHHHHHHHHHhCCEEEEEecC
Confidence 7888889999999999862 211111111 1112335677888999999999999988874
No 175
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=60.96 E-value=14 Score=38.35 Aligned_cols=60 Identities=15% Similarity=0.092 Sum_probs=49.1
Q ss_pred CHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCC
Q 009560 227 TIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAP 290 (532)
Q Consensus 227 te~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~p 290 (532)
.+-..++|+++|.++|.+=+-| +|+.+...+....++++++.++|++.+|--+|.+-.+|
T Consensus 109 ~~ws~~rike~GadavK~Llyy----~pD~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd 168 (329)
T PRK04161 109 VEWSVKRLKEAGADAVKFLLYY----DVDGDEEINDQKQAYIERIGSECTAEDIPFFLELLTYD 168 (329)
T ss_pred chhhHHHHHHhCCCeEEEEEEE----CCCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccC
Confidence 3567889999999999998754 44444344566899999999999999999999998875
No 176
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=60.73 E-value=1.5e+02 Score=28.75 Aligned_cols=146 Identities=16% Similarity=0.085 Sum_probs=83.5
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTD 307 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~ 307 (532)
|-.-+.|+++|+..|=|.-+-.. .+-.+.=+.+-+-+..|...||+||..+--. .+. +.
T Consensus 76 EiS~~mlkd~G~~wVIlGHSERR--------~~fgEsd~~i~~K~~~Al~eGl~ViaCIGE~------lee---RE---- 134 (247)
T KOG1643|consen 76 EISAEMLKDLGAEWVILGHSERR--------HVFGESDEFIADKTAHALAEGLKVIACIGET------LEE---RE---- 134 (247)
T ss_pred ccCHHHHHhCCCCEEEecchhhh--------hhhCCchHHHHHHHHHHHHcCCeEEEEeccc------HHh---hh----
Confidence 56677899999999977443211 1222233456666778999999999987532 000 00
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCC-CCCcccHHHHHHHHHHHHHhhCCC---------cEEEEeC
Q 009560 308 WPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAA-TVPLDILVPYYKQGYQIVRKYSPT---------AYVIVCQ 377 (532)
Q Consensus 308 W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~-~~~~~~l~~~~~~~~~aIR~~~~~---------~~Viv~~ 377 (532)
.....+-..+=...++++-++-.+|+ +.-||.+. +.....-.+-.|+.+..||+-..+ .-||.++
T Consensus 135 --aG~t~dVv~~Ql~aiad~v~~w~niv---iAYEPVWAIGTGk~atp~QaqEVh~~iR~wl~~~vs~~Va~~~RIiYGG 209 (247)
T KOG1643|consen 135 --AGKTLDVVFRQLKAIADKVKDWSNIV---IAYEPVWAIGTGKTATPEQAQEVHAEIRKWLKSNVSDAVASSTRIIYGG 209 (247)
T ss_pred --cCchHHHHHHHHHHHHHhcCCccceE---EEeeceeeecCCCCCCHHHHHHHHHHHHHHHhhcchhhhhhceEEEecc
Confidence 01234445555667788888777665 66678763 111222333456677777764332 3456665
Q ss_pred CCCCCCchhhhhccCCCCcEEE
Q 009560 378 RIGNADPLELYQANIGLHNIVV 399 (532)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~nvv~ 399 (532)
.-...+-.++.+.++-+..+|=
T Consensus 210 SV~g~N~~el~~~~diDGFLVG 231 (247)
T KOG1643|consen 210 SVNGGNCKELAKKPDIDGFLVG 231 (247)
T ss_pred ccccccHHHhcccccccceEEc
Confidence 4333455667666544555543
No 177
>KOG3885 consensus Fibroblast growth factor [Signal transduction mechanisms]
Probab=60.30 E-value=33 Score=31.79 Aligned_cols=62 Identities=26% Similarity=0.273 Sum_probs=50.7
Q ss_pred EEEecC-CeEEEEeCCCceEEEeecCCCCCceEEEEEcCCCcEEEEe-cCCceEEeccCceEEeC
Q 009560 114 QFRTSQ-GQFLTCDGEGCVVSATAKSPSTPETFEIERNNDSRVHIKL-KSGTYLQATLGNQLTSD 176 (532)
Q Consensus 114 ~lr~~~-~~~v~~~~~g~~~~a~~~~~~~~e~F~~v~~~~~~v~i~a-~nG~~l~a~~~~~v~ad 176 (532)
.|=+.+ |.++.+..+|. |.+++.--.+-..++|+--+-+.|+||. ..|.||+.+..|.|.+-
T Consensus 29 ~LY~~t~g~hLqi~p~g~-V~Gt~~~~s~~siLei~sv~~GvV~IkGV~s~~YL~Mn~~G~LygS 92 (155)
T KOG3885|consen 29 LLYCRNGGHFLRILPDGT-VDGTRDRSDQHTIFEIITVAVGVVAIKGVESELYLAMNKEGKLYAS 92 (155)
T ss_pred EEEEcCCCEEEEEcCCCc-cccccccCCCceeEEEEEeeecEEEEEEeeceeEEEECCCCcEecC
Confidence 333444 99999988885 8888887677888888888767999988 88999999999988876
No 178
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=60.24 E-value=20 Score=37.66 Aligned_cols=62 Identities=15% Similarity=0.017 Sum_probs=44.6
Q ss_pred CHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 227 TIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 227 te~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
+++|++...+.|+..|++.++-........-..=.++.++.+.++++.|+++|++|...+-.
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~ 184 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSC 184 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 69999999999999999987542211100000113458899999999999999999866654
No 179
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=60.18 E-value=17 Score=36.89 Aligned_cols=50 Identities=22% Similarity=0.378 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAA 289 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~ 289 (532)
++-|++++++|+..|.|-+ ++. -.+...+.++++++.|.+|.| +||+|..
T Consensus 109 ~~~f~~~~~~Gv~GvKidF-----~~~-----d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~ 158 (273)
T PF10566_consen 109 DEAFKLYAKWGVKGVKIDF-----MDR-----DDQEMVNWYEDILEDAAEYKL--MVNFHGA 158 (273)
T ss_dssp HHHHHHHHHCTEEEEEEE-------SS-----TSHHHHHHHHHHHHHHHHTT---EEEETTS
T ss_pred HHHHHHHHHcCCCEEeeCc-----CCC-----CCHHHHHHHHHHHHHHHHcCc--EEEecCC
Confidence 8999999999999999955 232 144579999999999999975 6899974
No 180
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=60.02 E-value=25 Score=35.67 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAA 289 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~ 289 (532)
++-++..+++|+..|=|--+|................-..|.+++++|++.|+.|+|=.|..
T Consensus 35 k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~ 96 (273)
T PF10566_consen 35 KRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSE 96 (273)
T ss_dssp HHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECC
T ss_pred HHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCC
Confidence 57789999999999999888843111111111111233669999999999999999999974
No 181
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=59.88 E-value=23 Score=40.53 Aligned_cols=70 Identities=19% Similarity=0.300 Sum_probs=49.5
Q ss_pred eeecccChhhHHHHHHhhccccCCHHHHHHHHHcCCCEEEEccccccccCCC-------CCCCCCc--ChHHHHHHHHHH
Q 009560 204 QLANGYGHERAKEVLKRHRNTFITIEDFNFLYRHGINTVRIPVGWWIAFDPD-------PPAPFIG--GSLEALDNALSW 274 (532)
Q Consensus 204 ~l~~~~G~~~a~~~~~~hw~t~ite~d~~~la~~G~N~VRIpv~ww~~~~~~-------~~~~~~~--~~l~~Ld~~v~~ 274 (532)
|+.++|+.+.|. +-+..++++|+.++=++=-| .....+ .+...++ ++.+-|.+++..
T Consensus 11 Q~~~gFtF~~A~-------------~~l~yl~~LGIShLY~SPIf-tA~pGStHGYDVvD~t~InPeLGG~egl~rLvaa 76 (889)
T COG3280 11 QFRGGFTFADAR-------------ALLDYLADLGISHLYLSPIF-TARPGSTHGYDVVDPTEINPELGGEEGLERLVAA 76 (889)
T ss_pred eecCCCCHHHHH-------------HhhHHHHhcCchheeccchh-hcCCCCCCCccCCCccccChhhcChHHHHHHHHH
Confidence 567888887774 66788999999999774322 111111 1122333 478999999999
Q ss_pred HHHcCCEEEEEcC
Q 009560 275 AEAYNIKCIIDLH 287 (532)
Q Consensus 275 a~k~Gi~VILDlH 287 (532)
+++.||.+|+|+-
T Consensus 77 lk~~GlGlI~DIV 89 (889)
T COG3280 77 LKSRGLGLIVDIV 89 (889)
T ss_pred HHhcCCceEEEec
Confidence 9999999999963
No 182
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=59.60 E-value=20 Score=35.45 Aligned_cols=59 Identities=14% Similarity=0.047 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
++-++..+++|...||++.+... ...+.+.......+.+.++.+.|+++||.+.|-.|.
T Consensus 87 ~~~i~~a~~lg~~~i~~~~g~~~--~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~ 145 (254)
T TIGR03234 87 ALAIAYARALGCPQVNCLAGKRP--AGVSPEEARATLVENLRYAADALDRIGLTLLIEPIN 145 (254)
T ss_pred HHHHHHHHHhCCCEEEECcCCCC--CCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 67788999999999998765310 000011111234567888999999999999998774
No 183
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=59.27 E-value=59 Score=32.90 Aligned_cols=80 Identities=20% Similarity=0.229 Sum_probs=51.0
Q ss_pred hHHHHHHhhccccCCHHHHHHHHHcCCCEEEEcccccc-ccCCC-----C------CCCCCcChHHHHHHHHHHHHHcCC
Q 009560 213 RAKEVLKRHRNTFITIEDFNFLYRHGINTVRIPVGWWI-AFDPD-----P------PAPFIGGSLEALDNALSWAEAYNI 280 (532)
Q Consensus 213 ~a~~~~~~hw~t~ite~d~~~la~~G~N~VRIpv~ww~-~~~~~-----~------~~~~~~~~l~~Ld~~v~~a~k~Gi 280 (532)
..-+.+.+.|..|+.++....+...|.=++++.=+... ..+.. . ......+.++.|++.++.+++.+.
T Consensus 135 ~~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~a~~~~~ 214 (296)
T cd00842 135 WLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDELQEAEQAGE 214 (296)
T ss_pred HHHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34456667788888877777777667544442111111 11110 0 011124589999999999999999
Q ss_pred EEEEEcCCCCCC
Q 009560 281 KCIIDLHAAPGS 292 (532)
Q Consensus 281 ~VILDlH~~pGs 292 (532)
+|+|-.|..||.
T Consensus 215 ~v~I~~HiPp~~ 226 (296)
T cd00842 215 KVWIIGHIPPGV 226 (296)
T ss_pred eEEEEeccCCCC
Confidence 999999998864
No 184
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=59.22 E-value=96 Score=30.40 Aligned_cols=148 Identities=14% Similarity=0.172 Sum_probs=83.4
Q ss_pred eEEEEecCCeEEEEeCCCceEEEeecCCCCCceEEEE----EcCCCcEEEEecCCceEEeccCceEEeCCCCCCCC-CCC
Q 009560 112 EFQFRTSQGQFLTCDGEGCVVSATAKSPSTPETFEIE----RNNDSRVHIKLKSGTYLQATLGNQLTSDYPGMPGW-DDN 186 (532)
Q Consensus 112 ~~~lr~~~~~~v~~~~~g~~~~a~~~~~~~~e~F~~v----~~~~~~v~i~a~nG~~l~a~~~~~v~ad~~~~~~W-~~~ 186 (532)
.++|.+..|.-|++-+-+| +|...+|-++ +.+.++|.|...+ ++.-+ ..--| .- +-+. -.+
T Consensus 22 ~Vsl~v~~GEiVGLLGPNG--------AGKTT~Fymi~Glv~~d~G~i~ld~~d---iT~lP-m~~RA-rl-GigYLpQE 87 (243)
T COG1137 22 DVSLEVNSGEIVGLLGPNG--------AGKTTTFYMIVGLVRPDSGKILLDDED---ITKLP-MHKRA-RL-GIGYLPQE 87 (243)
T ss_pred eeeEEEcCCcEEEEECCCC--------CCceeEEEEEEEEEecCCceEEECCcc---cccCC-hHHHh-hc-Cccccccc
Confidence 3788888899998864333 2677789754 3335556554333 11111 00001 11 1223 567
Q ss_pred CcceeeecccCCCCccceeecccChhhHHHHHHhhc-cccCCH---HHHHHHHHcCCCEEEEccccccccCC--------
Q 009560 187 AATFEMAIVANNLHGDYQLANGYGHERAKEVLKRHR-NTFITI---EDFNFLYRHGINTVRIPVGWWIAFDP-------- 254 (532)
Q Consensus 187 ps~f~~~~~~~~~~~e~~l~~~~G~~~a~~~~~~hw-~t~ite---~d~~~la~~G~N~VRIpv~ww~~~~~-------- 254 (532)
||+|.--.+.. +-..+++-+. +....+ +-=+.|.+..+.++|=.-.... ...
T Consensus 88 ~SIFr~LtV~d---------------Ni~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sL-SGGERRR~EIA 151 (243)
T COG1137 88 ASIFRKLTVED---------------NIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSL-SGGERRRVEIA 151 (243)
T ss_pred chHhhcCcHHH---------------HHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCccccc-ccchHHHHHHH
Confidence 88888555442 2233333332 111111 1224567888888886544321 111
Q ss_pred -----CC-----CCCC---CcChHHHHHHHHHHHHHcCCEEEEEcCCC
Q 009560 255 -----DP-----PAPF---IGGSLEALDNALSWAEAYNIKCIIDLHAA 289 (532)
Q Consensus 255 -----~~-----~~~~---~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~ 289 (532)
+| .+|| ++-....+.++|...+++||.|+|+=|+.
T Consensus 152 RaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNV 199 (243)
T COG1137 152 RALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNV 199 (243)
T ss_pred HHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccH
Confidence 01 1343 45589999999999999999999999965
No 185
>PRK06256 biotin synthase; Validated
Probab=59.12 E-value=66 Score=33.34 Aligned_cols=126 Identities=14% Similarity=0.112 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCC-cChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCC
Q 009560 226 ITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFI-GGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDG 304 (532)
Q Consensus 226 ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~-~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g 304 (532)
++++.++.|+++|++.|=+.+. . .+.-..... ...++..-++++.+++.||.|-..+-- |-
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lE---t-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~--Gl------------ 211 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLE---T-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGII--GM------------ 211 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCc---c-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEE--eC------------
Confidence 6899999999999997655431 1 111001111 235777888999999999986554332 21
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEecc-CCCCC--CCCcccHHHHHHHHHHHHHhhCCCcEEEEeCCC
Q 009560 305 TTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLN-EPSAA--TVPLDILVPYYKQGYQIVRKYSPTAYVIVCQRI 379 (532)
Q Consensus 305 ~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~N-EP~~~--~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~~~ 379 (532)
.+..+...+.+..+. +.+ +..+.+..++ .|..+ ..+..... -+.+.+...|-.-|+..|.++++.
T Consensus 212 ------gEt~ed~~~~~~~l~-~l~--~~~v~i~~l~P~pGT~l~~~~~~~~~-e~l~~ia~~Rl~~p~~~I~~~~gr 279 (336)
T PRK06256 212 ------GESLEDRVEHAFFLK-ELD--ADSIPINFLNPIPGTPLENHPELTPL-ECLKTIAIFRLINPDKEIRIAGGR 279 (336)
T ss_pred ------CCCHHHHHHHHHHHH-hCC--CCEEeecccccCCCCCCCCCCCCCHH-HHHHHHHHHHHHCCCCeeEecCch
Confidence 023344455555554 232 2222233333 12211 11112233 344577799999999998887654
No 186
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=59.01 E-value=18 Score=36.37 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAA 289 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~ 289 (532)
+.-++..+++|.+.|+++.+.... .+.+.......+.+.++++.|+++||++.|-.|..
T Consensus 88 ~~~i~~A~~lG~~~v~~~~g~~~~---~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~ 146 (279)
T cd00019 88 KDEIERCEELGIRLLVFHPGSYLG---QSKEEGLKRVIEALNELIDKAETKGVVIALETMAG 146 (279)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCC
Confidence 788999999999999997654211 11111123357888889999999999999988853
No 187
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=58.29 E-value=16 Score=37.81 Aligned_cols=59 Identities=14% Similarity=0.100 Sum_probs=48.7
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAP 290 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~p 290 (532)
+-..++|+++|.++|.+=+-| +|+.+...+....++++++.++|++.+|--+|.+-.+|
T Consensus 108 ~wS~~rike~GadavK~Llyy----~pD~~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~ 166 (324)
T PRK12399 108 DWSAKRIKEEGADAVKFLLYY----DVDEPDEINEQKKAYIERIGSECVAEDIPFFLEILTYD 166 (324)
T ss_pred hhhHHHHHHhCCCeEEEEEEE----CCCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeecc
Confidence 556889999999999998744 45544445566899999999999999999999988875
No 188
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=58.15 E-value=13 Score=41.25 Aligned_cols=66 Identities=14% Similarity=0.223 Sum_probs=43.8
Q ss_pred cccCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCC-CcChHHHHHHHHHHHHHcCCEEEEEcC-CCCC
Q 009560 223 NTFITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF-IGGSLEALDNALSWAEAYNIKCIIDLH-AAPG 291 (532)
Q Consensus 223 ~t~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~-~~~~l~~Ld~~v~~a~k~Gi~VILDlH-~~pG 291 (532)
...++++.++.|+++|+|.|=|.| ..+.+. .-... .....+.+.++++.++++|++|.+||- ..||
T Consensus 201 PD~i~~e~L~~L~~~G~~rVslGV--QS~~d~-VL~~inRght~~~v~~Ai~~lr~~G~~v~~~LM~GLPg 268 (522)
T TIGR01211 201 PDYCREEHIDRMLKLGATRVELGV--QTIYND-ILERTKRGHTVRDVVEATRLLRDAGLKVVYHIMPGLPG 268 (522)
T ss_pred CCcCCHHHHHHHHHcCCCEEEEEC--ccCCHH-HHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEeecCCCC
Confidence 446789999999999998555544 222111 00000 123678888999999999999888765 3355
No 189
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=57.79 E-value=1.9e+02 Score=30.05 Aligned_cols=59 Identities=7% Similarity=-0.079 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCC--CEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCC
Q 009560 228 IEDFNFLYRHGI--NTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAA 289 (532)
Q Consensus 228 e~d~~~la~~G~--N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~ 289 (532)
++.++.+++.|| ++|=|-+.|+.. ...-.++++.+...+++++..++.|++|++.+|..
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~~---~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~ 87 (339)
T cd06603 27 KEVDAGFDEHDIPYDVIWLDIEHTDG---KRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPH 87 (339)
T ss_pred HHHHHHHHHcCCCceEEEEChHHhCC---CCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCc
Confidence 455566667774 455555554321 11123455566667899999999999999998844
No 190
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=57.57 E-value=11 Score=37.61 Aligned_cols=60 Identities=15% Similarity=0.068 Sum_probs=41.7
Q ss_pred CHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEc
Q 009560 227 TIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDL 286 (532)
Q Consensus 227 te~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDl 286 (532)
.++|++...+.|++.||+.++-........-..-.+..++.+.++++.|++.|+.|.+.+
T Consensus 71 ~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 71 VKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 588999999999999999775422100000000023468889999999999999987654
No 191
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=57.53 E-value=13 Score=37.94 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=43.6
Q ss_pred CHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 227 TIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 227 te~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
+.+|++...+.|++.||+.++-........-..-.++.++.+.+++++|+++|+.|...+-.
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~ 142 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSC 142 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEE
Confidence 68999999999999999977432111100000112347888999999999999999866553
No 192
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=57.41 E-value=1.7e+02 Score=30.58 Aligned_cols=143 Identities=13% Similarity=0.017 Sum_probs=74.5
Q ss_pred HHHHHHHHHcCC--CEEEEccccccccCCCCCCCCCcChHHHH--HHHHHHHHHcCCEEEEEcCCCCCCC----------
Q 009560 228 IEDFNFLYRHGI--NTVRIPVGWWIAFDPDPPAPFIGGSLEAL--DNALSWAEAYNIKCIIDLHAAPGSQ---------- 293 (532)
Q Consensus 228 e~d~~~la~~G~--N~VRIpv~ww~~~~~~~~~~~~~~~l~~L--d~~v~~a~k~Gi~VILDlH~~pGsq---------- 293 (532)
++.++.+++.|| ++|=|-+.|+.. ...-.++++.+... +++|+.+++.|++|++-+|..-.-.
T Consensus 27 ~~~~~~~r~~~iP~d~i~lD~~~~~~---~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~ 103 (339)
T cd06602 27 KEVVENMRAAGIPLDVQWNDIDYMDR---RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPYD 103 (339)
T ss_pred HHHHHHHHHhCCCcceEEECcccccC---ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHH
Confidence 455566677774 455555555321 12223444455556 8999999999999999877432111
Q ss_pred ----CCC---CCCCC---------CCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCC-CCCcccHHHH
Q 009560 294 ----NGM---EHSAS---------RDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAA-TVPLDILVPY 356 (532)
Q Consensus 294 ----n~~---~~sg~---------~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~-~~~~~~l~~~ 356 (532)
.++ +..|. .....++.+|+.++-+.+..+.+...++ ...+ +-=+|||..- ....-.-..+
T Consensus 104 e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G-vdg~--w~D~~Ep~~~~~~hN~y~~~~ 180 (339)
T cd06602 104 RGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVP-FDGL--WIDMNEPSNFYDVHNLYGLSE 180 (339)
T ss_pred HHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCC-CcEE--EecCCCCchHhhhcchhhHHH
Confidence 000 00110 0122455666665555444444333221 2233 4468999631 0111111234
Q ss_pred HHHHHHHHHhhCCCcEEEEe
Q 009560 357 YKQGYQIVRKYSPTAYVIVC 376 (532)
Q Consensus 357 ~~~~~~aIR~~~~~~~Viv~ 376 (532)
.+..++++++....+++++.
T Consensus 181 ~~~~~~~~~~~~~~r~~~~s 200 (339)
T cd06602 181 AIATYKALQSIPGKRPFVIS 200 (339)
T ss_pred HHHHHHHHHhcCCCCCEEEE
Confidence 55677888887555666664
No 193
>PRK04302 triosephosphate isomerase; Provisional
Probab=56.49 E-value=2e+02 Score=27.97 Aligned_cols=108 Identities=12% Similarity=0.103 Sum_probs=65.2
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTD 307 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~ 307 (532)
+.-.+.+++.|++.|=+|-+- . ..+ .+.+.+.++.|+++||.+|++.|..
T Consensus 75 ~~~~~~l~~~G~~~vii~~se-----r--~~~-----~~e~~~~v~~a~~~Gl~~I~~v~~~------------------ 124 (223)
T PRK04302 75 HILPEAVKDAGAVGTLINHSE-----R--RLT-----LADIEAVVERAKKLGLESVVCVNNP------------------ 124 (223)
T ss_pred hhHHHHHHHcCCCEEEEeccc-----c--ccC-----HHHHHHHHHHHHHCCCeEEEEcCCH------------------
Confidence 455888999999999665321 0 011 3447889999999999999987741
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCC-cccHHHHHHHHHHHHHhhCCCcEEEEeCCCC
Q 009560 308 WPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVP-LDILVPYYKQGYQIVRKYSPTAYVIVCQRIG 380 (532)
Q Consensus 308 W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~-~~~l~~~~~~~~~aIR~~~~~~~Viv~~~~~ 380 (532)
+ +.. .+ .+..+.+++|+...= .+.+.. .....+-.++.++.||+..++.+|+.+++..
T Consensus 125 ----~---~~~----~~---~~~~~~~I~~~p~~~-igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~ 183 (223)
T PRK04302 125 ----E---TSA----AA---AALGPDYVAVEPPEL-IGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGIS 183 (223)
T ss_pred ----H---HHH----HH---hcCCCCEEEEeCccc-cccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence 1 111 11 112345666654211 111111 1123445788889999987778888887663
No 194
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=55.24 E-value=14 Score=36.63 Aligned_cols=61 Identities=15% Similarity=0.049 Sum_probs=43.2
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
+++++.+++.|+..|||++.-........-..=.++.++.+.+.++.++++|+.|.+.+-.
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~ 137 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLED 137 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 8999999999999999988532110000000002236888999999999999999999843
No 195
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=55.24 E-value=17 Score=37.57 Aligned_cols=59 Identities=15% Similarity=0.059 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAP 290 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~p 290 (532)
.-..++|+++|.++|.+=+-| +|+.+...+....++++++.++|++.||--+|.+-.++
T Consensus 109 ~~s~~rike~GadavK~Llyy----~pD~~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd 167 (325)
T TIGR01232 109 EWSAKRLKEQGANAVKFLLYY----DVDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYD 167 (325)
T ss_pred cccHHHHHHhCCCeEEEEEEe----CCCCChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccC
Confidence 456889999999999998744 44443344556899999999999999999999988875
No 196
>PTZ00333 triosephosphate isomerase; Provisional
Probab=55.23 E-value=2e+02 Score=28.84 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
|=-.+.|+++|++.|=|.=+ +.. .+-.+.=+.+.+-++.|.++||.+||..-.
T Consensus 79 evS~~mL~d~G~~~viiGHS-----ERR---~~f~Etd~~I~~Kv~~al~~gl~pIlCvGE 131 (255)
T PTZ00333 79 EISAEMLKDLGINWTILGHS-----ERR---QYFGETNEIVAQKVKNALENGLKVILCIGE 131 (255)
T ss_pred cCCHHHHHHcCCCEEEECcc-----ccc---CcCCCCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 45567899999999866321 111 122233467888889999999999998753
No 197
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=55.20 E-value=34 Score=39.01 Aligned_cols=117 Identities=18% Similarity=0.291 Sum_probs=64.2
Q ss_pred ccCCHHHHHHHHHcCCCEEEEcccc-ccccCCCCCCC---CCcC----hHHHHHHHHHHHHHcCCEEEEEcCCC--CCC-
Q 009560 224 TFITIEDFNFLYRHGINTVRIPVGW-WIAFDPDPPAP---FIGG----SLEALDNALSWAEAYNIKCIIDLHAA--PGS- 292 (532)
Q Consensus 224 t~ite~d~~~la~~G~N~VRIpv~w-w~~~~~~~~~~---~~~~----~l~~Ld~~v~~a~k~Gi~VILDlH~~--pGs- 292 (532)
++-.|+|+... +.||+..-||..- |.-++-..+.. ++.. -.+.|+++- ++.+.|-+|||.|-- +|.
T Consensus 367 NY~DE~DV~~V-d~~FDehdiP~DviWLDIEhtdgKrYFTWDk~~FP~P~~Ml~kLa--~kgRklV~IvDPHIKkD~~Y~ 443 (915)
T KOG1066|consen 367 NYNDEEDVLTV-DQGFDEHDIPYDVIWLDIEHTDGKRYFTWDKHKFPNPKDMLKKLA--SKGRKLVTIVDPHIKKDDGYF 443 (915)
T ss_pred cccchhhhhhh-hcCccccCCccceEEEeeeecCCceeEeeccccCCCHHHHHHHHH--hcCCceEEEeCcccccCCCeE
Confidence 46678888776 4789999999864 44344333322 2332 233344332 345789999999943 210
Q ss_pred ------CCC---CCCCC------CCCCCCC---CCChhhHHHHHHHHHHHHHHhCCC-CcEEEEEeccCCCC
Q 009560 293 ------QNG---MEHSA------SRDGTTD---WPASDYISQTLDVIDFLASRYAKH-PALLGIELLNEPSA 345 (532)
Q Consensus 293 ------qn~---~~~sg------~~~g~~~---W~~~~~~~~~~~~w~~la~ry~~~-p~v~g~EL~NEP~~ 345 (532)
+.+ -+++| +..|+.. +.+|+.++-+..... ..+|... +++..|.=||||.-
T Consensus 444 v~ke~~~~gy~VKd~~G~DyeG~CWPG~S~yiDf~nP~~r~wW~~~fa--fd~y~g~t~nl~iWNDMNEPSV 513 (915)
T KOG1066|consen 444 VHKEAKDKGYYVKDRDGSDYEGWCWPGSSSYIDFINPEARKWWKSQFA--FDRYEGSTPNLFIWNDMNEPSV 513 (915)
T ss_pred EhHHhhhCCeEEEecCCCcccccccCCCcccccccCHHHHHHHhhhcc--cccccCCCCceEEeccCCCccc
Confidence 000 01111 1222222 234555544443333 4566544 67999999999975
No 198
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=54.90 E-value=1.1e+02 Score=31.71 Aligned_cols=58 Identities=9% Similarity=0.106 Sum_probs=35.9
Q ss_pred HHHHHHHHHcC--CCEEEEccccccccCCCC--CCCCCcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 228 IEDFNFLYRHG--INTVRIPVGWWIAFDPDP--PAPFIGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 228 e~d~~~la~~G--~N~VRIpv~ww~~~~~~~--~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
++.++.+++.| +++|=|-+.|+. ... .-.++.+.+...+++|+.++++|++|++.+|.
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~---~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P 88 (319)
T cd06591 27 LDVAKEYRKRGIPLDVIVQDWFYWP---KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWP 88 (319)
T ss_pred HHHHHHHHHhCCCccEEEEechhhc---CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecC
Confidence 34445556665 445544444432 111 22345555666889999999999999998773
No 199
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=54.50 E-value=22 Score=35.32 Aligned_cols=59 Identities=14% Similarity=0.029 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
++-++..+++|...|+++.++.. .....+.......+.|+++.+.|+++|+++.+-.|.
T Consensus 88 ~~~i~~a~~lga~~i~~~~g~~~--~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n 146 (258)
T PRK09997 88 AAAIRYARALGNKKINCLVGKTP--AGFSSEQIHATLVENLRYAANMLMKEDILLLIEPIN 146 (258)
T ss_pred HHHHHHHHHhCCCEEEECCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 68888999999999999775421 111111111234577788889999999999988764
No 200
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=54.22 E-value=1.2e+02 Score=32.18 Aligned_cols=133 Identities=14% Similarity=0.112 Sum_probs=74.1
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCC----CcChHHHHHHHHHHHHHcCCE-EEEEcCCCCCCCCCCCCC
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF----IGGSLEALDNALSWAEAYNIK-CIIDLHAAPGSQNGMEHS 299 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~----~~~~l~~Ld~~v~~a~k~Gi~-VILDlH~~pGsqn~~~~s 299 (532)
.+|+++++.|+++|++.+-+.+. ..++.....+ ....++..-+.++.|++.||. |=+++-.
T Consensus 159 ~lt~e~~~~Lk~aGv~r~~i~lE---T~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~----------- 224 (366)
T TIGR02351 159 PLNEEEYKKLVEAGLDGVTVYQE---TYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGALL----------- 224 (366)
T ss_pred cCCHHHHHHHHHcCCCEEEEEee---cCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEEE-----------
Confidence 37899999999999996665442 1111111011 122566666788999999986 4443221
Q ss_pred CCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEE---EEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEe
Q 009560 300 ASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLG---IELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVC 376 (532)
Q Consensus 300 g~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g---~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~ 376 (532)
|-.+| ....-.+....+.|-.+|.+.+.-+- +.....|..+. ..--..-+.+.+.++|-..|+.-|.++
T Consensus 225 ----Gl~e~--~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g~~~~~--~~l~~~~~~~~i~~~R~~~P~~~i~~s 296 (366)
T TIGR02351 225 ----GLDDW--RTDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTNGLKPK--VIVTDRELVQIICAYRLFDPFVEISLS 296 (366)
T ss_pred ----eCchh--HHHHHHHHHHHHHHHHHcCCCCccccccccccCCCCCCCC--CcCCHHHHHHHHHHHHHhCcccccEEe
Confidence 11112 23333345566677777776432221 11111122111 111133456788899999999999988
Q ss_pred CCC
Q 009560 377 QRI 379 (532)
Q Consensus 377 ~~~ 379 (532)
++-
T Consensus 297 ~g~ 299 (366)
T TIGR02351 297 TRE 299 (366)
T ss_pred cCC
Confidence 754
No 201
>PRK07094 biotin synthase; Provisional
Probab=53.87 E-value=92 Score=32.01 Aligned_cols=128 Identities=15% Similarity=0.085 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCC-cChHHHHHHHHHHHHHcCCEEEEEcCC-CCCCCCCCCCCCCCC
Q 009560 226 ITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFI-GGSLEALDNALSWAEAYNIKCIIDLHA-APGSQNGMEHSASRD 303 (532)
Q Consensus 226 ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~-~~~l~~Ld~~v~~a~k~Gi~VILDlH~-~pGsqn~~~~sg~~~ 303 (532)
.+++.++.|+++|++.|-+.+.- .++.--..+. ....+...+.++.+++.|+.|-.++-- .||
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs---~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpg------------ 191 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHET---ADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPG------------ 191 (323)
T ss_pred CCHHHHHHHHHcCCCEEEecccc---CCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCC------------
Confidence 47899999999999988765521 1111000111 235778888999999999986554332 121
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCC--CCcccHHHHHHHHHHHHHhhCCCcEEEEeCCC
Q 009560 304 GTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAAT--VPLDILVPYYKQGYQIVRKYSPTAYVIVCQRI 379 (532)
Q Consensus 304 g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~--~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~~~ 379 (532)
+..+...+.++.+.+ ++- ..+....+.-.|..+- ....... -.-+++...|-.-|+..|-...++
T Consensus 192 --------et~ed~~~~l~~l~~-l~~-~~v~~~~~~P~pgTpl~~~~~~~~~-~~~~~~a~~R~~lp~~~i~~~~~~ 258 (323)
T PRK07094 192 --------QTLEDLADDILFLKE-LDL-DMIGIGPFIPHPDTPLKDEKGGSLE-LTLKVLALLRLLLPDANIPATTAL 258 (323)
T ss_pred --------CCHHHHHHHHHHHHh-CCC-CeeeeeccccCCCCCcccCCCCCHH-HHHHHHHHHHHhCcCCCCcccCCc
Confidence 223344444444433 221 1222223333443321 1112223 336788888998888655444444
No 202
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=52.86 E-value=1.7e+02 Score=31.25 Aligned_cols=123 Identities=15% Similarity=0.083 Sum_probs=70.7
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCC-CcChHHHHHHHHHHHHHcCCEEEEEcCC-CCCCCCCCCCCCCC
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF-IGGSLEALDNALSWAEAYNIKCIIDLHA-APGSQNGMEHSASR 302 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~-~~~~l~~Ld~~v~~a~k~Gi~VILDlH~-~pGsqn~~~~sg~~ 302 (532)
.++++.++.++++|+|-|=|.| ..+ ++..-... .....+...++++++++.+..|-+|+-. .||
T Consensus 119 ~~~~e~L~~l~~~GvnrisiGv--QS~-~~~~L~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPg----------- 184 (394)
T PRK08898 119 TFEAEKFAQFRASGVNRLSIGI--QSF-NDAHLKALGRIHDGAEARAAIEIAAKHFDNFNLDLMYALPG----------- 184 (394)
T ss_pred CCCHHHHHHHHHcCCCeEEEec--ccC-CHHHHHHhCCCCCHHHHHHHHHHHHHhCCceEEEEEcCCCC-----------
Confidence 4678999999999999665555 222 21100000 1124566777888999888888888753 232
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCC-------CCCcccHHHHHHHHHHHHHhhCCCcE
Q 009560 303 DGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAA-------TVPLDILVPYYKQGYQIVRKYSPTAY 372 (532)
Q Consensus 303 ~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~-------~~~~~~l~~~~~~~~~aIR~~~~~~~ 372 (532)
...+.+.+-++.+.+ ++ -+.+-.+.+.=||..+ -.+.+...+.++.+.+.+++.+-.++
T Consensus 185 ---------qt~~~~~~~l~~~~~-l~-p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~y 250 (394)
T PRK08898 185 ---------QTLDEALADVETALA-FG-PPHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIEARLAAAGYAHY 250 (394)
T ss_pred ---------CCHHHHHHHHHHHHh-cC-CCEEEEeeeEECCCChhhhccCCCCChHHHHHHHHHHHHHHHHcCCchh
Confidence 112223333333322 22 1345556666666431 01234566777788888888886655
No 203
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=52.77 E-value=1.6e+02 Score=29.36 Aligned_cols=57 Identities=7% Similarity=0.035 Sum_probs=37.4
Q ss_pred HHHHHHHHcCC--CEEEEccccccccCCCCCC--CCCcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 229 EDFNFLYRHGI--NTVRIPVGWWIAFDPDPPA--PFIGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 229 ~d~~~la~~G~--N~VRIpv~ww~~~~~~~~~--~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
+.++.+++.|| +++=|-..|... .... .++++.+....++|+++++.|++|++.+|.
T Consensus 28 ~~~~~~~~~~iP~d~~~lD~~~~~~---~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P 88 (265)
T cd06589 28 EVIDGMRENDIPLDGFVLDDDYTDG---YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDP 88 (265)
T ss_pred HHHHHHHHcCCCccEEEECcccccC---CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeCh
Confidence 44555566664 355555555321 1122 445556677889999999999999998874
No 204
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=52.12 E-value=2.4e+02 Score=27.70 Aligned_cols=99 Identities=15% Similarity=0.109 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCC
Q 009560 264 SLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEP 343 (532)
Q Consensus 264 ~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP 343 (532)
.++..+..+..+++.|++|++.+.....+ . +.....+++.++++++-+..+..+|. +=|+++==|+
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~-------~---~~~~~~~~~~~~~fa~~l~~~v~~yg----lDGiDiD~E~ 114 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLG-------A---GFANNLSDAAAKAYAKAIVDTVDKYG----LDGVDFDDEY 114 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCC-------C---CccccCCHHHHHHHHHHHHHHHHHhC----CCceEEeeee
Confidence 46677888889999999999998753111 0 00011245667777766666667774 3334443343
Q ss_pred CCCCC-C-cccHHHHHHHHHHHHHhhC-C-CcEEEEe
Q 009560 344 SAATV-P-LDILVPYYKQGYQIVRKYS-P-TAYVIVC 376 (532)
Q Consensus 344 ~~~~~-~-~~~l~~~~~~~~~aIR~~~-~-~~~Viv~ 376 (532)
..... . ...-.+-+..+++.+|+.- + +.+|++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~lv~~Lr~~~~~~~kllt~~ 151 (255)
T cd06542 115 SGYGKNGTSQPSNEAFVRLIKELRKYMGPTDKLLTID 151 (255)
T ss_pred cccCCCCCCcchHHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 32110 0 1123345567777777654 3 5666664
No 205
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=51.70 E-value=3.1e+02 Score=29.20 Aligned_cols=121 Identities=12% Similarity=0.062 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHcCCCEEEEcccccccc-CCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCC
Q 009560 226 ITIEDFNFLYRHGINTVRIPVGWWIAF-DPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDG 304 (532)
Q Consensus 226 ite~d~~~la~~G~N~VRIpv~ww~~~-~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g 304 (532)
++++..+.+++.|+ .|=|.+.=-... |..-+..--.+.++++-+.++.++++++.+.+-.--
T Consensus 102 L~~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v~~~~~~vv---------------- 164 (378)
T COG0641 102 LNDEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAHGVDFNTLTVV---------------- 164 (378)
T ss_pred cCHHHHHHHHhcCc-eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHHcCCcEEEEEEE----------------
Confidence 57899999999999 888876310000 000000001247899999999999999774332211
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCC------CCCcccHHHHHHHHHHHHHhhCCC
Q 009560 305 TTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAA------TVPLDILVPYYKQGYQIVRKYSPT 370 (532)
Q Consensus 305 ~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~------~~~~~~l~~~~~~~~~aIR~~~~~ 370 (532)
++.+.++..++.+++.+.. ...+-.+.++-..... ..+.+.+.+|+....+..++.+-.
T Consensus 165 -----~~~n~~~~~ei~~~l~~~g--~~~i~fip~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~ 229 (378)
T COG0641 165 -----NRQNVLHPEEIYHFLKSEG--SKFIQFIPLVESDNRGDSLLEFSVTAEEYGQFLIAIFDEWVRHDVG 229 (378)
T ss_pred -----chhHhhCHHHHHHHHHHcc--cceEEEEecccCCCCCccccccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 1345555666666666654 1223223444333322 245678999999999999999843
No 206
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=51.45 E-value=26 Score=39.26 Aligned_cols=60 Identities=15% Similarity=0.204 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCCEEEEccccccc-----cCCCCCCCCCc--ChHHHHHHHHHHHHHcCCEEEEEcC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIA-----FDPDPPAPFIG--GSLEALDNALSWAEAYNIKCIIDLH 287 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~-----~~~~~~~~~~~--~~l~~Ld~~v~~a~k~Gi~VILDlH 287 (532)
.+-++.|+++|++++=|+=..-.. ..+...+.+++ +.++.+.++|+++.+.||++|+|+-
T Consensus 43 ~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~v 109 (545)
T KOG0471|consen 43 TSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADLV 109 (545)
T ss_pred hhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEeec
Confidence 577899999999999774321110 01111122222 4789999999999999999999974
No 207
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=51.36 E-value=36 Score=34.30 Aligned_cols=50 Identities=8% Similarity=0.034 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCC
Q 009560 226 ITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAA 289 (532)
Q Consensus 226 ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~ 289 (532)
...+|++..++.|+..|||.+.. ..++.+.++++.++++|+.|.+.+-..
T Consensus 83 ~~~~~l~~a~~~gv~~iri~~~~--------------~~~~~~~~~i~~ak~~G~~v~~~~~~a 132 (266)
T cd07944 83 DDIDLLEPASGSVVDMIRVAFHK--------------HEFDEALPLIKAIKEKGYEVFFNLMAI 132 (266)
T ss_pred CCHHHHHHHhcCCcCEEEEeccc--------------ccHHHHHHHHHHHHHCCCeEEEEEEee
Confidence 35789999999999999996522 257888999999999999999987653
No 208
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=51.20 E-value=42 Score=41.47 Aligned_cols=55 Identities=11% Similarity=0.158 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCCEEEE-ccccccccCCCCCCCCC--------------cChHHHHHHHHHHHHHc-CCEEEEEc
Q 009560 228 IEDFNFLYRHGINTVRI-PVGWWIAFDPDPPAPFI--------------GGSLEALDNALSWAEAY-NIKCIIDL 286 (532)
Q Consensus 228 e~d~~~la~~G~N~VRI-pv~ww~~~~~~~~~~~~--------------~~~l~~Ld~~v~~a~k~-Gi~VILDl 286 (532)
++.++.|+++|+|+|-+ |+.- . ...+.+|. ++..+.++++|+.+.+. ||++|+|.
T Consensus 135 ~~~L~~ik~lGyN~IhftPI~~-~---G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDv 205 (1464)
T TIGR01531 135 EPRLRVAKEKGYNMIHFTPLQE-L---GGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDI 205 (1464)
T ss_pred HHHHHHHHHcCCCEEEeCCCcc-C---CCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 78999999999999987 3320 0 11111221 14678899999999984 99999995
No 209
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=51.00 E-value=26 Score=30.51 Aligned_cols=47 Identities=26% Similarity=0.271 Sum_probs=24.7
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEE
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKC 282 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~V 282 (532)
-++++||+.|++.||.+| |-. ..+.+.+ ..-..+..-+.|++.||.-
T Consensus 14 Q~~~~d~~~la~~GfktV-Inl----Rpd~E~~------~qp~~~~~~~~a~~~Gl~y 60 (110)
T PF04273_consen 14 QPSPEDLAQLAAQGFKTV-INL----RPDGEEP------GQPSSAEEAAAAEALGLQY 60 (110)
T ss_dssp S--HHHHHHHHHCT--EE-EE-----S-TTSTT------T-T-HHCHHHHHHHCT-EE
T ss_pred CCCHHHHHHHHHCCCcEE-EEC----CCCCCCC------CCCCHHHHHHHHHHcCCeE
Confidence 357899999999999998 221 1111111 1112444557899999863
No 210
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=50.89 E-value=2.2e+02 Score=26.91 Aligned_cols=122 Identities=13% Similarity=0.147 Sum_probs=69.2
Q ss_pred hccccCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCC
Q 009560 221 HRNTFITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSA 300 (532)
Q Consensus 221 hw~t~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg 300 (532)
||..-|+..|++.+|+.|+..|=|-++ +.. .+.. ..+.+-++.|++.||.|=+ .|-. ...
T Consensus 8 ~~Qg~i~~~dw~~vk~~Gi~faiikat-----eG~---~~~D---~~~~~n~~~A~~aGl~vG~-Yhf~--------~~~ 67 (192)
T cd06522 8 SNNGIMSVADYNKLKNYGVKAVIVKLT-----EGT---TYRN---PYAASQIANAKAAGLKVSA-YHYA--------HYT 67 (192)
T ss_pred CCCCCccHHHHHHHHHcCCCEEEEEEc-----CCC---CccC---hHHHHHHHHHHHCCCeeEE-EEEE--------ecC
Confidence 355566778999999999995544332 111 1111 2367888999999996533 2311 000
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHHHHHhCC-CCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEe
Q 009560 301 SRDGTTDWPASDYISQTLDVIDFLASRYAK-HPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVC 376 (532)
Q Consensus 301 ~~~g~~~W~~~~~~~~~~~~w~~la~ry~~-~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~ 376 (532)
..++.+++...+++.+.. +.- .+..+.+|+=..+ ....+.++.++.++.|++.+...++|-.
T Consensus 68 --------~~~~a~~eA~~f~~~~~~-~~~~~~~~~~lD~E~~~-----~~~~~~~~~~~F~~~v~~~g~~~~~iY~ 130 (192)
T cd06522 68 --------SAADAQAEARYFANTAKS-LGLSKNTVMVADMEDSS-----SSGNATANVNAFWQTMKAAGYKNTDVYT 130 (192)
T ss_pred --------ChHHHHHHHHHHHHHHHH-cCCCCCCceEEEeecCC-----CcchHHHHHHHHHHHHHHcCCCCcEEEc
Confidence 013455555666666533 321 1223334442222 1356788889999999998765555544
No 211
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=50.76 E-value=86 Score=32.76 Aligned_cols=106 Identities=9% Similarity=0.010 Sum_probs=57.1
Q ss_pred HHHHHHHHcC--CCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCC
Q 009560 229 EDFNFLYRHG--INTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTT 306 (532)
Q Consensus 229 ~d~~~la~~G--~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~ 306 (532)
+-++.+++.+ +++|=|-+.|+.. ...-.+++..+...+++++..++.|+++++.+|-.-. .+....+ .....
T Consensus 28 ~v~~~~r~~~IP~D~i~lDidy~~~---~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~--~g~~~~~-~~~~p 101 (332)
T cd06601 28 EVVEGYRDNNIPLDGLHVDVDFQDN---YRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS--YGGGLGS-PGLYP 101 (332)
T ss_pred HHHHHHHHcCCCCceEEEcCchhcC---CCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee--cCccCCC-Cceee
Confidence 3344455556 4566666665421 2222344555566788999999999999998774321 1111111 11234
Q ss_pred CCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Q 009560 307 DWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPS 344 (532)
Q Consensus 307 ~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~ 344 (532)
+|.+++.++- |..+.+.+.+..--..|-=+|||.
T Consensus 102 Dftnp~ar~w----W~~~~~~l~~~Gv~~~W~DmnEp~ 135 (332)
T cd06601 102 DLGRPDVREW----WGNQYKYLFDIGLEFVWQDMTTPA 135 (332)
T ss_pred CCCCHHHHHH----HHHHHHHHHhCCCceeecCCCCcc
Confidence 6667776654 444444333222112355689986
No 212
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=50.30 E-value=18 Score=38.30 Aligned_cols=61 Identities=10% Similarity=0.001 Sum_probs=42.6
Q ss_pred CHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcC
Q 009560 227 TIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLH 287 (532)
Q Consensus 227 te~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH 287 (532)
.++|++.+.+.|+..|||.++-+.......-..-.++.++.+.++++.|+++|+.|.+.+-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 5899999999999999996653221100000011234688889999999999999988763
No 213
>PLN02449 ferrochelatase
Probab=50.23 E-value=2.8e+02 Score=30.69 Aligned_cols=143 Identities=18% Similarity=0.244 Sum_probs=84.6
Q ss_pred hhccccCCHHHHHHHHHcCCCEEEE-cccc--ccc------------cCCCC-----------CCCCCcChHHHHHHHHH
Q 009560 220 RHRNTFITIEDFNFLYRHGINTVRI-PVGW--WIA------------FDPDP-----------PAPFIGGSLEALDNALS 273 (532)
Q Consensus 220 ~hw~t~ite~d~~~la~~G~N~VRI-pv~w--w~~------------~~~~~-----------~~~~~~~~l~~Ld~~v~ 273 (532)
+||..++ ++-++.|++.|++.|-+ |+.- ... ..... ...-.+++++.+-+.|.
T Consensus 187 RY~~P~i-edal~~l~~~G~~~iVvLPLYPQyS~sTtgSs~~~l~~~~~~~~~~~~~~~~~I~~~~~~p~yI~A~a~~I~ 265 (485)
T PLN02449 187 RYWHPFT-EEAIDQIKADGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYVKAMADLIK 265 (485)
T ss_pred hcCCCCH-HHHHHHHHhcCCCeEEEEECCcccccccHHHHHHHHHHHHhhcccccCCeeEEeccccCChHHHHHHHHHHH
Confidence 3666554 78899999999997764 4411 000 00000 00112346666666555
Q ss_pred HHH-Hc----CCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCC----CCcEEEEEeccCCC
Q 009560 274 WAE-AY----NIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAK----HPALLGIELLNEPS 344 (532)
Q Consensus 274 ~a~-k~----Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~----~p~v~g~EL~NEP~ 344 (532)
.+. +. +..+++..|..|=+.- +.. | +.++++..+..+.|+++.+. .+..++|+----|
T Consensus 266 ~~l~~~~~~~~~~LlFSAHGlP~~~v--~~~----G------DpY~~q~~~ta~lI~~~L~~~~~~~~~~layQSR~Gp- 332 (485)
T PLN02449 266 KELAKFSDPEEVHIFFSAHGVPVSYV--EEA----G------DPYKAQMEECVDLIMEELKARGILNRHTLAYQSRVGP- 332 (485)
T ss_pred HHHHhccCcCCcEEEEecCCChhhhh--hhc----C------CChHHHHHHHHHHHHHHhCCCCCCCCeEEEEeCCCCC-
Confidence 432 22 3789999999884310 011 1 23467777777888887754 3456677652222
Q ss_pred CCCCCcccHHHHHHHHHHHHHhhCCCcEEEEeCCCCC
Q 009560 345 AATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQRIGN 381 (532)
Q Consensus 345 ~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~~~~~ 381 (532)
.+.+..+.++++..+.+.+-++++++..+|-+
T Consensus 333 -----~eWL~P~t~d~L~~L~~~Gvk~VlvvPigFvS 364 (485)
T PLN02449 333 -----VEWLKPYTDETIVELGKKGVKSLLAVPISFVS 364 (485)
T ss_pred -----CCCCCCCHHHHHHHHHHcCCCeEEEECCcccc
Confidence 23456677788888888887788888877754
No 214
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=49.73 E-value=40 Score=33.79 Aligned_cols=59 Identities=7% Similarity=0.164 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
++.++..+++|...|+++- +....+.. .+.......+.|+.+.+.|+++|+.+.+-.|.
T Consensus 102 ~~~i~~a~~lG~~~i~~~~-~~~~~~~~-~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~ 160 (283)
T PRK13209 102 RKAIQLAQDLGIRVIQLAG-YDVYYEQA-NNETRRRFIDGLKESVELASRASVTLAFEIMD 160 (283)
T ss_pred HHHHHHHHHcCCCEEEECC-cccccccc-HHHHHHHHHHHHHHHHHHHHHhCCEEEEeecC
Confidence 7888999999999999852 10000000 01111234677888999999999999998873
No 215
>PRK14567 triosephosphate isomerase; Provisional
Probab=49.62 E-value=2.9e+02 Score=27.80 Aligned_cols=52 Identities=13% Similarity=0.035 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLH 287 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH 287 (532)
|=--+.||+.|++.|=|.=+ +.. .+-.+.-+.+.+-++.|.++||.+|+..-
T Consensus 75 EvS~~mLkd~G~~yviiGHS-----ERR---~~f~Etd~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 75 EISARMLEDIGCDYLLIGHS-----ERR---SLFAESDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred cCCHHHHHHcCCCEEEECcc-----ccc---CccCCCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 44567889999999866321 111 22233445677788899999999999875
No 216
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=49.22 E-value=43 Score=33.37 Aligned_cols=59 Identities=15% Similarity=0.182 Sum_probs=41.5
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
++-++..+.+|...|+++...- .... ..+...+...+.|+++.+.|+++||++.+-.|.
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~~-~~~~-~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~ 151 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAHA-GYLT-PPNVIWGRLAENLSELCEYAENIGMDLILEPLT 151 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCCC-CCCC-CHHHHHHHHHHHHHHHHHHHHHcCCEEEEecCC
Confidence 6788899999999999964321 1111 111112346778899999999999999888774
No 217
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=48.76 E-value=1e+02 Score=29.95 Aligned_cols=60 Identities=17% Similarity=0.140 Sum_probs=38.0
Q ss_pred CHHHHHH----HHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEc
Q 009560 227 TIEDFNF----LYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDL 286 (532)
Q Consensus 227 te~d~~~----la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDl 286 (532)
.+++++. +++.|++.||+.++-....-...-..-.+..++.+.+++++++++|+.|-+.+
T Consensus 65 ~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~ 128 (237)
T PF00682_consen 65 NEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGC 128 (237)
T ss_dssp CHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCc
Confidence 4566666 44699999999775422100000001123468888999999999999996654
No 218
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=48.67 E-value=24 Score=38.54 Aligned_cols=59 Identities=12% Similarity=0.086 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCC-cChHHHHHHHHHHHHHcCCEEEEEcC
Q 009560 226 ITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFI-GGSLEALDNALSWAEAYNIKCIIDLH 287 (532)
Q Consensus 226 ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~-~~~l~~Ld~~v~~a~k~Gi~VILDlH 287 (532)
++++.++.|+++|++.|-|.+- .. ++..-..+. ....+.+.++++.++++||.|.+++-
T Consensus 285 ~~~e~l~~l~~aG~~~v~iGiE--S~-s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~I 344 (472)
T TIGR03471 285 VDYETLKVMKENGLRLLLVGYE--SG-DQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFI 344 (472)
T ss_pred CCHHHHHHHHHcCCCEEEEcCC--CC-CHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEE
Confidence 6899999999999998777662 11 110000111 12567888999999999999988864
No 219
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=48.51 E-value=19 Score=36.62 Aligned_cols=62 Identities=8% Similarity=0.073 Sum_probs=44.1
Q ss_pred CHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 227 TIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 227 te~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
.+.+++..++.|++.|+|.++-........-..-.+..++.+.++++.|+++|++|.+.+-.
T Consensus 76 ~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d 137 (280)
T cd07945 76 GDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED 137 (280)
T ss_pred cHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe
Confidence 36789999999999999977432111100000113458999999999999999999998764
No 220
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=48.07 E-value=36 Score=35.33 Aligned_cols=63 Identities=25% Similarity=0.344 Sum_probs=47.5
Q ss_pred HHhhccc---cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCC
Q 009560 218 LKRHRNT---FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPG 291 (532)
Q Consensus 218 ~~~hw~t---~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pG 291 (532)
+|.|-.| -.+++-++.|+++|++-||++.+ .+ .+...+..-+.+..|+++||-|=+.+-+.||
T Consensus 111 fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~-------~~----~~~~~e~~i~~l~~A~~~g~dvG~EiPaipg 176 (353)
T COG2108 111 FHIHLYTTGILATEEALKALAEAGLDEIRFHPP-------RP----GSKSSEKYIENLKIAKKYGMDVGVEIPAIPG 176 (353)
T ss_pred eeEEEeeccccCCHHHHHHHHhCCCCeEEecCC-------Cc----cccccHHHHHHHHHHHHhCccceeecCCCcc
Confidence 4566555 45899999999999999999653 11 2334566777888899999998888777664
No 221
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=47.74 E-value=2.5e+02 Score=27.92 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=37.8
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLH 287 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH 287 (532)
|=-.+.|++.|++.|=|.=+ +. ..+-.+.-+.+.+-+..|.++||.+|+..-
T Consensus 74 evS~~mL~d~G~~~viiGHS-----ER---R~~f~Et~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 74 EISAEMLKDAGAKYVIIGHS-----ER---RQYFGETDEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred cCCHHHHHHcCCCEEEeCcc-----cc---cCcCCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 45567899999999976321 21 122334567788889999999999999875
No 222
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=47.68 E-value=90 Score=34.22 Aligned_cols=99 Identities=21% Similarity=0.308 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChh-hHHHHHHHHHHHHHHhCCCCcEEEEEeccC
Q 009560 264 SLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASD-YISQTLDVIDFLASRYAKHPALLGIELLNE 342 (532)
Q Consensus 264 ~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~-~~~~~~~~w~~la~ry~~~p~v~g~EL~NE 342 (532)
..+.+|.+++.|++.|++=||-|-..|- .|...|...+ -.+..+++.+++.++|+|+-. +.+.=-
T Consensus 90 ~~~~Id~aLe~a~~~GirNILALRGDpP-----------~g~d~~~~~e~gF~yA~DLVr~Irs~YGDyF~---IgVAgY 155 (590)
T KOG0564|consen 90 PKEMIDKALEQAKALGIRNILALRGDPP-----------IGQDKWVEEEGGFRYAVDLVRYIRSKYGDYFC---IGVAGY 155 (590)
T ss_pred cHHHHHHHHHHHHHhCchhhhhhcCCCC-----------CCccccccccCCchhHHHHHHHHHHHhCCeEE---EEeccC
Confidence 4688999999999999999999987741 1111233222 345688999999999998643 223333
Q ss_pred CCCCCC--C---cccH---------------------HHHHHHHHHHHHhhCCCcEEEEe
Q 009560 343 PSAATV--P---LDIL---------------------VPYYKQGYQIVRKYSPTAYVIVC 376 (532)
Q Consensus 343 P~~~~~--~---~~~l---------------------~~~~~~~~~aIR~~~~~~~Viv~ 376 (532)
|.+... + ..++ .+-.-+.++.+|+++.+.+|+.+
T Consensus 156 PEghpe~~~~~~~~Dl~yLk~KvdaGaDFIiTQlFYd~e~flkfv~~cR~~gi~~PIvPG 215 (590)
T KOG0564|consen 156 PEGHPEAPSHDYLADLPYLKEKVDAGADFIITQLFYDVETFLKFVKDCRAAGINVPIVPG 215 (590)
T ss_pred CCCCcCCcccchhhhhHHHHHhhcccchhhhhhhhcCHHHHHHHHHHHHHhCCCCCcccc
Confidence 443210 0 0000 11223567789999999998765
No 223
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=47.57 E-value=2.6e+02 Score=28.86 Aligned_cols=145 Identities=12% Similarity=0.074 Sum_probs=75.4
Q ss_pred HHHHHHHHHcCC--CEEEEccccccccC-CC--CCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCC--CCC-------C
Q 009560 228 IEDFNFLYRHGI--NTVRIPVGWWIAFD-PD--PPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAA--PGS-------Q 293 (532)
Q Consensus 228 e~d~~~la~~G~--N~VRIpv~ww~~~~-~~--~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~--pGs-------q 293 (532)
.+.++.+++.|| ++|=|-..|+.... .. ..-.++++.+...+++|+..++.|++|++.+|.. +.+ .
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~ 106 (317)
T cd06598 27 DDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVK 106 (317)
T ss_pred HHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHh
Confidence 455666777774 56666656642110 00 0123455556667899999999999999988743 111 1
Q ss_pred CCC---CCC-CC---------CCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCC-------CCccc-
Q 009560 294 NGM---EHS-AS---------RDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAAT-------VPLDI- 352 (532)
Q Consensus 294 n~~---~~s-g~---------~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~-------~~~~~- 352 (532)
+++ +.. +. ..+..++.+|+.++-+.+..+.+.+ .+...+ +-=+|||.... .+...
T Consensus 107 ~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~--~Gvdg~--w~D~~Ep~~~~~~~~~~~g~~~~~ 182 (317)
T cd06598 107 AGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLID--QGVTGW--WGDLGEPEVHPPDMCHHKGKAAEV 182 (317)
T ss_pred CCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHhhh--CCccEE--EecCCCccccCCccccCCCcHhHH
Confidence 111 000 00 1123356667766666555555411 122222 44688985311 01111
Q ss_pred ---H-HHHHHHHHHHHHhhCCC-cEEEEe
Q 009560 353 ---L-VPYYKQGYQIVRKYSPT-AYVIVC 376 (532)
Q Consensus 353 ---l-~~~~~~~~~aIR~~~~~-~~Viv~ 376 (532)
+ ..+.+.+++++++..++ +++++.
T Consensus 183 hN~y~~~~~~~~~e~~~~~~~~~r~~~~~ 211 (317)
T cd06598 183 HNIYGHLWAKSIYEGYQQNYPNERPFILM 211 (317)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 1 23345677788876554 555554
No 224
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=47.42 E-value=1.1e+02 Score=32.62 Aligned_cols=50 Identities=20% Similarity=0.298 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
++||+..++.||+..=|-+.. .+++ ..+.|..+++.|++.|++++|.+--
T Consensus 20 ~~di~~A~~~GIDgFaLNig~--------~d~~---~~~~l~~a~~AA~~~gFKlf~SfD~ 69 (386)
T PF03659_consen 20 EADIRLAQAAGIDGFALNIGS--------SDSW---QPDQLADAYQAAEAVGFKLFFSFDM 69 (386)
T ss_pred HHHHHHHHHcCCCEEEEeccc--------CCcc---cHHHHHHHHHHHHhcCCEEEEEecc
Confidence 899999999999999886641 1122 4688999999999999999997653
No 225
>KOG3885 consensus Fibroblast growth factor [Signal transduction mechanisms]
Probab=47.23 E-value=1.7e+02 Score=27.22 Aligned_cols=78 Identities=17% Similarity=0.183 Sum_probs=57.7
Q ss_pred ccceEEEEEecCCeEEEEecCCCceeEEcCCCCCCcceEEEEEecCCeEEEEe-cCCeEEEEeCCCceEEEeecCCCCCc
Q 009560 65 DGTQVQIKSVTLEKYVCAESGGGTDVSVTRDVASSWETFTLWRVSESEFQFRT-SQGQFLTCDGEGCVVSATAKSPSTPE 143 (532)
Q Consensus 65 ~g~~v~~~s~~~~~yv~ae~gg~~~l~anr~~~~~wE~f~~~~~~~~~~~lr~-~~~~~v~~~~~g~~~~a~~~~~~~~e 143 (532)
++-.-+|-+.+-|.++.+...| .|..-+..-+.--.+++.-+.-+.|++|. ..+.|+|-+..|. |.+. ....+-|
T Consensus 24 ~~r~~~LY~~t~g~hLqi~p~g--~V~Gt~~~~s~~siLei~sv~~GvV~IkGV~s~~YL~Mn~~G~-LygS-~~~t~eC 99 (155)
T KOG3885|consen 24 YKRPKLLYCRNGGHFLRILPDG--TVDGTRDRSDQHTIFEIITVAVGVVAIKGVESELYLAMNKEGK-LYAS-KEFTEEC 99 (155)
T ss_pred CceeeEEEEcCCCEEEEEcCCC--ccccccccCCCceeEEEEEeeecEEEEEEeeceeEEEECCCCc-EecC-CCCCccc
Confidence 4445556554449999999865 44455555555666776667777899998 8899999998985 9988 6667888
Q ss_pred eEE
Q 009560 144 TFE 146 (532)
Q Consensus 144 ~F~ 146 (532)
.|.
T Consensus 100 ~F~ 102 (155)
T KOG3885|consen 100 KFK 102 (155)
T ss_pred eeE
Confidence 896
No 226
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=47.19 E-value=1.8e+02 Score=28.91 Aligned_cols=118 Identities=11% Similarity=0.101 Sum_probs=66.8
Q ss_pred ChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccC
Q 009560 263 GSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNE 342 (532)
Q Consensus 263 ~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NE 342 (532)
..++.++++++.|++.|..+|.- +..+ . +. ....+...+.+++.++.+++..++..-.+++|....
T Consensus 91 ~~~~~~~~~i~~a~~lG~~~v~~-~~~~---~-~~---------~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~ 156 (284)
T PRK13210 91 RALEIMKKAIRLAQDLGIRTIQL-AGYD---V-YY---------EEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIMDT 156 (284)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEE-CCcc---c-cc---------ccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCc
Confidence 47889999999999999999863 3210 0 00 001246678888888888887777666677776533
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHhhCCC-cEEEEeCCC---CCCCchhhhhccCCCCcEEEEeeeccc
Q 009560 343 PSAATVPLDILVPYYKQGYQIVRKYSPT-AYVIVCQRI---GNADPLELYQANIGLHNIVVDLHYYNL 406 (532)
Q Consensus 343 P~~~~~~~~~l~~~~~~~~~aIR~~~~~-~~Viv~~~~---~~~~~~~~~~~~~~~~nvv~s~H~Y~~ 406 (532)
+.. ... +++...+++++.. .-+.+..++ .+.++...+.. ...-+..+|.-..
T Consensus 157 ~~~-----~~~----~~~~~l~~~v~~~~~~~~~D~~h~~~~~~~~~~~l~~---~~~~i~~vHikD~ 212 (284)
T PRK13210 157 PFM-----NSI----SKWKKWDKEIDSPWLTVYPDVGNLSAWGNDVWSELKL---GIDHIAAIHLKDT 212 (284)
T ss_pred ccc-----CCH----HHHHHHHHHcCCCceeEEecCChhhhcCCCHHHHHHH---hcCeEEEEEeccc
Confidence 211 111 2344556666643 333333321 11233333322 2345677777654
No 227
>PLN02429 triosephosphate isomerase
Probab=47.07 E-value=2.4e+02 Score=29.32 Aligned_cols=53 Identities=15% Similarity=0.085 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
|=.-+.|++.|++.|=|.=+ +.. .+-.+.=+.+.+=+..|.++||.+|+..-.
T Consensus 137 EVSa~mLkd~Gv~~ViiGHS-----ERR---~~f~Etd~~V~~Kv~~al~~GL~pIvCIGE 189 (315)
T PLN02429 137 EISVEQLKDLGCKWVILGHS-----ERR---HVIGEKDEFIGKKAAYALSEGLGVIACIGE 189 (315)
T ss_pred cCCHHHHHHcCCCEEEeCcc-----ccC---CCCCcCHHHHHHHHHHHHHCcCEEEEEcCC
Confidence 45567889999998866321 111 122223344445555699999999998753
No 228
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=46.46 E-value=31 Score=36.18 Aligned_cols=58 Identities=10% Similarity=0.110 Sum_probs=43.3
Q ss_pred HHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCC
Q 009560 229 EDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAP 290 (532)
Q Consensus 229 ~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~p 290 (532)
-..+.++++|.++|-+-+.| .++.+.......++.|.++.+.|+++||-+++-+-.+|
T Consensus 110 ~sve~a~~~GAdAVk~lv~~----~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~ 167 (340)
T PRK12858 110 WSVRRIKEAGADAVKLLLYY----RPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYD 167 (340)
T ss_pred ccHHHHHHcCCCEEEEEEEe----CCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 34677999999999998865 23222122345788999999999999999999754444
No 229
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=45.20 E-value=30 Score=36.23 Aligned_cols=60 Identities=12% Similarity=0.091 Sum_probs=42.2
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCC--CcChHHHHHHHHHHHHHcCCEEEEEcC
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF--IGGSLEALDNALSWAEAYNIKCIIDLH 287 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~--~~~~l~~Ld~~v~~a~k~Gi~VILDlH 287 (532)
-++++.++.|++.|++.|.|++.- .++...... ..+.++.+-+.++.++++|+.|.|..-
T Consensus 92 ll~~e~~~~L~~~g~~~v~iSldg---~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~v 153 (358)
T TIGR02109 92 GLTEARLDALADAGLDHVQLSFQG---VDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFV 153 (358)
T ss_pred cCCHHHHHHHHhCCCCEEEEeCcC---CCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEE
Confidence 467899999999999999998842 111100111 124678888888999999998877653
No 230
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=45.15 E-value=66 Score=33.29 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCC--cChHHHHHHHHHHHHHcCCE-EEEEcCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFI--GGSLEALDNALSWAEAYNIK-CIIDLHAAP 290 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~--~~~l~~Ld~~v~~a~k~Gi~-VILDlH~~p 290 (532)
++.++.+++.|++.|.|.+.- .++.....+. ...++.+-+.++.+++.|+. |-+.....+
T Consensus 102 ~~~~~~L~~~gl~~v~ISld~---~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~ 164 (334)
T TIGR02666 102 ARHAKDLKEAGLKRVNVSLDS---LDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMR 164 (334)
T ss_pred HHHHHHHHHcCCCeEEEeccc---CCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeC
Confidence 457888999999999988742 2222112222 23788899999999999997 777765433
No 231
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=44.76 E-value=73 Score=32.58 Aligned_cols=90 Identities=9% Similarity=0.114 Sum_probs=52.0
Q ss_pred HHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCC
Q 009560 269 DNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATV 348 (532)
Q Consensus 269 d~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~ 348 (532)
.++++.|+++|++|++-+....++ +++. ..-...-.+++.++++++-+..++++|+= . |++|-=|+..+ .
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~--~~~~---~~~~~~l~~~~~r~~fi~~iv~~l~~~~~-D---GidiDwE~~~~-~ 117 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNG--NFDS---ELAHAVLSNPEARQRLINNILALAKKYGY-D---GVNIDFENVPP-E 117 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCC--CCCH---HHHHHHhcCHHHHHHHHHHHHHHHHHhCC-C---cEEEecccCCH-H
Confidence 578999999999999998763210 0000 00000112456777888777777777742 2 33332243221 2
Q ss_pred CcccHHHHHHHHHHHHHhhC
Q 009560 349 PLDILVPYYKQGYQIVRKYS 368 (532)
Q Consensus 349 ~~~~l~~~~~~~~~aIR~~~ 368 (532)
+.+.+..+++++.+++++.+
T Consensus 118 d~~~~~~fl~~lr~~l~~~~ 137 (313)
T cd02874 118 DREAYTQFLRELSDRLHPAG 137 (313)
T ss_pred HHHHHHHHHHHHHHHhhhcC
Confidence 44567777777777777654
No 232
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=44.49 E-value=34 Score=35.46 Aligned_cols=146 Identities=14% Similarity=0.162 Sum_probs=80.3
Q ss_pred HHHHHHHHHcCCCEEEEcccc---ccc-cCCCC----CCCCCc------ChHHHHHHHHHHHHHcCCEEEEEcCCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGW---WIA-FDPDP----PAPFIG------GSLEALDNALSWAEAYNIKCIIDLHAAPGSQ 293 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~w---w~~-~~~~~----~~~~~~------~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsq 293 (532)
++-++.|+..++|.+-+.+.= |.+ ....| ...+.. =.-+.+++++++|+++||.||..+-. ||..
T Consensus 21 k~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPeid~-PGH~ 99 (351)
T PF00728_consen 21 KRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPEIDT-PGHA 99 (351)
T ss_dssp HHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEEEEE-SSS-
T ss_pred HHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeeeccC-chHH
Confidence 577889999999999987731 111 11111 000110 15689999999999999999998753 5532
Q ss_pred CCCCC----CCC---------------CC--CCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCC-----
Q 009560 294 NGMEH----SAS---------------RD--GTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAAT----- 347 (532)
Q Consensus 294 n~~~~----sg~---------------~~--g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~----- 347 (532)
..+-. ... .. +...-.+++..+-..++++++++-|...--.+| .-|.....
T Consensus 100 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~~~iHiG---gDEv~~~~~~~~~ 176 (351)
T PF00728_consen 100 EAWLKAYPELGCSAWPEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADLFPSKYIHIG---GDEVNYNCWNNSP 176 (351)
T ss_dssp HHHHHHHHHHCCCHTTCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHTSSEEEEE----TSTTTHHHHCHH
T ss_pred HHHHHhCchhhccccccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCCCCeEEeC---CcccccccccCCH
Confidence 11100 000 00 011223467777788888888888873222233 33433210
Q ss_pred ------------CCcccHHHHHHHHHHHHHhhCCCcEEEEeCC
Q 009560 348 ------------VPLDILVPYYKQGYQIVRKYSPTAYVIVCQR 378 (532)
Q Consensus 348 ------------~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~~ 378 (532)
...+....+.+++.+.+++.+.+ +++-++.
T Consensus 177 ~~~~~~~~~~~~~~~~l~~~f~~~~~~~v~~~g~~-~~~W~D~ 218 (351)
T PF00728_consen 177 ECQAWMKQNGLTDPNDLFQYFVNRLADIVKKHGKK-PIIWNDM 218 (351)
T ss_dssp HHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHTTSE-EEEESTT
T ss_pred HHhhHHhhcCCchHHHHHHHHHHHHHHHHHhcCCc-EEEEccc
Confidence 00123345577888889998875 5555553
No 233
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=43.86 E-value=2e+02 Score=24.37 Aligned_cols=49 Identities=24% Similarity=0.440 Sum_probs=34.2
Q ss_pred CCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCchhhh
Q 009560 331 HPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQRIGNADPLELY 388 (532)
Q Consensus 331 ~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~~~~~~~~~~~~ 388 (532)
+|.++++.....|. .....+..+.+|+.+|+.+|++++...+.++...+
T Consensus 51 ~pd~V~iS~~~~~~---------~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~~~~~l 99 (121)
T PF02310_consen 51 RPDVVGISVSMTPN---------LPEAKRLARAIKERNPNIPIVVGGPHATADPEEIL 99 (121)
T ss_dssp TCSEEEEEESSSTH---------HHHHHHHHHHHHTTCTTSEEEEEESSSGHHHHHHH
T ss_pred CCcEEEEEccCcCc---------HHHHHHHHHHHHhcCCCCEEEEECCchhcChHHHh
Confidence 68899887764442 22346777779999999999998765444555544
No 234
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=43.85 E-value=35 Score=31.59 Aligned_cols=59 Identities=24% Similarity=0.195 Sum_probs=39.6
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCC-CcChHHHHHHHHHHHHHcC-CEEEEEc
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF-IGGSLEALDNALSWAEAYN-IKCIIDL 286 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~-~~~~l~~Ld~~v~~a~k~G-i~VILDl 286 (532)
.++++.++.|++.|++.|.|.+.-. ++.....+ ....++.+.+.++.++++| +.|-+.+
T Consensus 97 ~~~~~~~~~l~~~~~~~i~isl~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 97 TLTEELLEALKEAGVNRVSLGVQSG---SDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred cCCHHHHHHHHHcCCCeEEEecccC---CHHHHHHhcCCCCHHHHHHHHHHHHHhCCcceEEeE
Confidence 3578999999999999888877421 11100001 1235688999999999999 5554443
No 235
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=43.70 E-value=27 Score=37.11 Aligned_cols=60 Identities=13% Similarity=0.058 Sum_probs=42.7
Q ss_pred CHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEc
Q 009560 227 TIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDL 286 (532)
Q Consensus 227 te~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDl 286 (532)
.++|++.+.+.|++.|||.++-+...-...-..-.++.++.+.++++.|++.|+.|.++.
T Consensus 77 ~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 77 VKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred CHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 388999999999999999775432100000001124578899999999999999998863
No 236
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=43.39 E-value=78 Score=26.57 Aligned_cols=83 Identities=17% Similarity=0.155 Sum_probs=49.8
Q ss_pred hHHHHHHHH---HHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEec
Q 009560 264 SLEALDNAL---SWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELL 340 (532)
Q Consensus 264 ~l~~Ld~~v---~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~ 340 (532)
+++.|.+.+ +..++.+++|++|.++-. ...++..|.+++.- .+ .++-
T Consensus 3 Y~~~l~~~~~~~~~~~~~~~kivvD~~~G~--------------------------~~~~~~~ll~~lg~--~~--~~~n 52 (104)
T PF02879_consen 3 YIESLLSFIDILEAIKKSGLKIVVDCMNGA--------------------------GSDILPRLLERLGC--DV--IELN 52 (104)
T ss_dssp HHHHHHHTSCHHHHHHHTTCEEEEE-TTST--------------------------THHHHHHHHHHTTC--EE--EEES
T ss_pred HHHHHhhhccchhhcccCCCEEEEECCCCH--------------------------HHHHHHHHHHHcCC--cE--EEEe
Confidence 445555554 467899999999988622 24567777777754 22 3455
Q ss_pred cCCCCC--C-CCcccHHHHHHHHHHHHHhhCCCcEEEEe
Q 009560 341 NEPSAA--T-VPLDILVPYYKQGYQIVRKYSPTAYVIVC 376 (532)
Q Consensus 341 NEP~~~--~-~~~~~l~~~~~~~~~aIR~~~~~~~Viv~ 376 (532)
.+|... . ..++-..+.++.+.+.+++.+.+.-+++.
T Consensus 53 ~~~d~~f~~~~~p~p~~~~l~~~~~~v~~~~ad~g~~~D 91 (104)
T PF02879_consen 53 CDPDPDFPNQHAPNPEEESLQRLIKIVRESGADLGIAFD 91 (104)
T ss_dssp SS-STTGTTTSTSSTSTTTTHHHHHHHHHSTTSEEEEE-
T ss_pred cccccccccccccccccchhHHHHHHhhccCceEEEEEC
Confidence 555542 1 11111226778899999999887666654
No 237
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=43.12 E-value=31 Score=36.45 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=42.0
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCC--CcChHHHHHHHHHHHHHcCCEEEEEc
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF--IGGSLEALDNALSWAEAYNIKCIIDL 286 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~--~~~~l~~Ld~~v~~a~k~Gi~VILDl 286 (532)
-++++.++.|++.|++.|+|++.- .+++..+.. ..+.++.+-+.++.++++|+.|.|..
T Consensus 101 ll~~~~~~~L~~~g~~~v~iSldg---~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~ 161 (378)
T PRK05301 101 GLTEARLAALKDAGLDHIQLSFQD---SDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNA 161 (378)
T ss_pred cCCHHHHHHHHHcCCCEEEEEecC---CCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEE
Confidence 368899999999999999998842 111100011 12367888888999999999987765
No 238
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=42.95 E-value=1.9e+02 Score=29.92 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
.+--+.+++.|+|.|=|-= .... +.-+.+..++.+.++.+..+.|||+|.|.+--
T Consensus 60 ~~YARllASiGINgvvlNN-----VNa~-~~~Lt~~~l~~v~~lAdvfRpYGIkv~LSvnF 114 (328)
T PF07488_consen 60 RDYARLLASIGINGVVLNN-----VNAN-PKLLTPEYLDKVARLADVFRPYGIKVYLSVNF 114 (328)
T ss_dssp HHHHHHHHHTT--EEE-S------SS---CGGGSTTTHHHHHHHHHHHHHTT-EEEEEE-T
T ss_pred HHHHHHHhhcCCceEEecc-----cccC-hhhcCHHHHHHHHHHHHHHhhcCCEEEEEeec
Confidence 4556778999999997621 1111 12345568999999999999999999998764
No 239
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=42.69 E-value=84 Score=32.97 Aligned_cols=96 Identities=14% Similarity=0.012 Sum_probs=60.3
Q ss_pred HHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCC-hhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCC
Q 009560 270 NALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPA-SDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATV 348 (532)
Q Consensus 270 ~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~-~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~ 348 (532)
..++.|+|+|++|+=.++..+..+..+- ...-.+ ++....+++-+..|++.|+=+.-. ++.=+.+. ...
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~~~~~~~-------~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~--iN~E~~~~-~~~ 119 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWTGQVEWL-------EDFLKKDEDGSFPVADKLVEVAKYYGFDGWL--INIETELG-DAE 119 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCCCchHHH-------HHHhccCcccchHHHHHHHHHHHHhCCCceE--eeeeccCC-cHH
Confidence 5678999999999999875432000000 000012 445667777778888888644333 33333331 113
Q ss_pred CcccHHHHHHHHHHHHHhhCCCcEEEE
Q 009560 349 PLDILVPYYKQGYQIVRKYSPTAYVIV 375 (532)
Q Consensus 349 ~~~~l~~~~~~~~~aIR~~~~~~~Viv 375 (532)
..+.+.+|.+.+.++.++..|...|+-
T Consensus 120 ~~~~l~~F~~~L~~~~~~~~~~~~v~W 146 (339)
T cd06547 120 KAKRLIAFLRYLKAKLHENVPGSLVIW 146 (339)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcEEEE
Confidence 567899999999999999988877664
No 240
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=42.31 E-value=25 Score=37.16 Aligned_cols=60 Identities=17% Similarity=0.025 Sum_probs=41.5
Q ss_pred CHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEc
Q 009560 227 TIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDL 286 (532)
Q Consensus 227 te~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDl 286 (532)
.++|++.+.+.|+..|||.++-+.......-..-.+..++.+.++++.|+++|+.|.+++
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ 133 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGG 133 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEee
Confidence 589999999999999999775432100000000023468888899999999999987653
No 241
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=41.82 E-value=80 Score=34.83 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=38.7
Q ss_pred CHHHHHHHHHcCCCEEEEccccccccCCCCCCCCC-cChHHHHHHHHHHHHHcCCEEEEEcC
Q 009560 227 TIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFI-GGSLEALDNALSWAEAYNIKCIIDLH 287 (532)
Q Consensus 227 te~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~-~~~l~~Ld~~v~~a~k~Gi~VILDlH 287 (532)
+++.++.|+++|++.|=|.+- .. ++..-..+. ....+...++++.++++||.+.+++-
T Consensus 286 d~ell~~l~~aG~~~v~iGiE--S~-~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I 344 (497)
T TIGR02026 286 DADILHLYRRAGLVHISLGTE--AA-AQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFI 344 (497)
T ss_pred CHHHHHHHHHhCCcEEEEccc--cC-CHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEE
Confidence 577889999999987776552 11 111000111 12567788999999999999887743
No 242
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=41.47 E-value=5.3e+02 Score=28.52 Aligned_cols=144 Identities=14% Similarity=0.261 Sum_probs=77.2
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCC--------C-----CCCCcC---hHHHHHHHHHHHHHcCCEEEEEcCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDP--------P-----APFIGG---SLEALDNALSWAEAYNIKCIIDLHAAPG 291 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~--------~-----~~~~~~---~l~~Ld~~v~~a~k~Gi~VILDlH~~pG 291 (532)
.+.++.|+..-+|+.- |...|... | +.|... .-+.+.++|++|+-+||+|+..+-. ||
T Consensus 201 krtLeaMa~nKLNVlH-----WHivDs~SFPle~~~~PeL~~kGaYs~~~vYT~eDv~evV~yarlRGIRVlpEfD~-Pg 274 (542)
T KOG2499|consen 201 KRTLEAMAANKLNVLH-----WHIVDSQSFPLESPTFPELHRKGAYSPRHVYTREDVSEVVEYARLRGIRVLPEFDT-PG 274 (542)
T ss_pred HHHHHHHHhhhhceeE-----EEeecCCCCccccCCchhhhhcCCCCcceeecHHHHHHHHHHHHhccceeeecccC-Cc
Confidence 6778888988999875 44444321 0 112221 4678899999999999999998764 55
Q ss_pred CCCCCCCCCCCC-CCCCC--------------CChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCC----------
Q 009560 292 SQNGMEHSASRD-GTTDW--------------PASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAA---------- 346 (532)
Q Consensus 292 sqn~~~~sg~~~-g~~~W--------------~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~---------- 346 (532)
....|-+ |..+ -.+.| .++...+-...+...+++-|.+.--.+|=|=++=|+..
T Consensus 275 Ht~sWg~-g~~~fl~p~~~~~~~~~~~gplnP~~n~tydvls~i~~dv~evFp~~~~HlGGDEV~~~CW~s~~~Iq~fM~ 353 (542)
T KOG2499|consen 275 HTGSWGP-GYPDFLTPCWSSFEVQPPFGPLNPTNNHTYDVLSEIFEDVSEVFPDEFFHLGGDEVSTPCWKSNPEIQDFMR 353 (542)
T ss_pred ccccccC-CCCcccCCcccccccCCCCcCCCCCchhHHHHHHHHHHHHHHhCcHHHeecCCceeecccccCChHHHHHHH
Confidence 3322211 1000 00111 12344555556666777766532111111111123221
Q ss_pred --CCCcc---cHHHHHHHHHHHHHhhCCCcEEEEeCCC
Q 009560 347 --TVPLD---ILVPYYKQGYQIVRKYSPTAYVIVCQRI 379 (532)
Q Consensus 347 --~~~~~---~l~~~~~~~~~aIR~~~~~~~Viv~~~~ 379 (532)
+...+ -.+-|.+...++|-+.+.. +|+-...+
T Consensus 354 ~kGfg~~~~~~~~~~~~~~~~i~~s~~~~-~I~Wqevf 390 (542)
T KOG2499|consen 354 KKGFGLDTKSLERLYIQFLLDILNSWNKT-VIVWQEVF 390 (542)
T ss_pred hCCCCchHHHHHHHHHHHHHHHHHhcCce-EEEeehhc
Confidence 11222 3677788888888888765 44444433
No 243
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=41.39 E-value=2.3e+02 Score=27.98 Aligned_cols=63 Identities=16% Similarity=0.295 Sum_probs=41.8
Q ss_pred cChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEecc
Q 009560 262 GGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLN 341 (532)
Q Consensus 262 ~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~N 341 (532)
+..++.+.+.++.|++.|..+|+ +|. |.. .. . ..++..+++++.++.+++. ...-.+++|-++
T Consensus 80 ~~~~~~l~~~i~~A~~lGa~~vv-~h~--g~~-----~~---~----~~e~~~~~~~~~l~~l~~~--~~gv~l~lEn~~ 142 (273)
T smart00518 80 EKSIERLIDEIKRCEELGIKALV-FHP--GSY-----LK---Q----SKEEALNRIIESLNEVIDE--TKGVVILLETTA 142 (273)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEE-Ecc--ccc-----cC---C----CHHHHHHHHHHHHHHHHhc--cCCcEEEEeccC
Confidence 45788999999999999998766 563 211 00 0 0145677888888888883 334445666553
No 244
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=41.10 E-value=2.3e+02 Score=27.78 Aligned_cols=157 Identities=16% Similarity=0.159 Sum_probs=78.1
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTD 307 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~ 307 (532)
++--+.+++.|+...-+....-....+.+ .-....++.+.++++.|++.|..+++.............
T Consensus 48 ~~l~~~l~~~gl~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~---------- 115 (274)
T COG1082 48 AELKELLADYGLEITSLAPFSNNLLSPDE--EEREEALEELKRAIELAKELGAKVVVVHPGLGAGADDPD---------- 115 (274)
T ss_pred HHHHHHHHHcCcEEEeecccCCCcCCCch--hhHHHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCC----------
Confidence 34444556778877654221110112211 111346888889999999999987776554321110000
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCC-cEEEEeCCC---CCCC
Q 009560 308 WPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPT-AYVIVCQRI---GNAD 383 (532)
Q Consensus 308 W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~-~~Viv~~~~---~~~~ 383 (532)
......+.+.+.++.+++.-+.. ++.+.+||+.. ....+... .+.++.+++.+.. ..+++..+. ...|
T Consensus 116 -~~~~~~~~~~~~l~~l~~~a~~~----~i~l~~e~~~~--~~~~~~~~-~~~~~~~~~~~~~~v~~~lD~~H~~~~~~d 187 (274)
T COG1082 116 -SPEEARERWAEALEELAEIAEEL----GIGLALENHHH--PGNVVETG-ADALDLLREVDSPNVGLLLDTGHAFFAGED 187 (274)
T ss_pred -CCcccHHHHHHHHHHHHHHHHHh----CCceEEeecCC--ccceeecC-HHHHHHHHhcCCCceEEEEecCchhhccCC
Confidence 01223356666666665554443 23344454211 11122223 5677888887754 445555432 1123
Q ss_pred chhhhhccCCCCcEEEEeeecccC
Q 009560 384 PLELYQANIGLHNIVVDLHYYNLF 407 (532)
Q Consensus 384 ~~~~~~~~~~~~nvv~s~H~Y~~f 407 (532)
+.+.... ...-+.-+|.....
T Consensus 188 ~~~~~~~---~~~rI~hvH~kD~~ 208 (274)
T COG1082 188 PLEAIRK---LGDRIGHVHLKDAD 208 (274)
T ss_pred HHHHHHH---hhcceeEEEEeecC
Confidence 4333222 22266777777654
No 245
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=40.92 E-value=17 Score=39.67 Aligned_cols=74 Identities=18% Similarity=0.215 Sum_probs=38.1
Q ss_pred HHHHHhc-CCCcEEEeccCcccCCCC----CCHH----HHHHHHHHHHHHHHh--CCCcEEEEcccCCCCCCchHhhHhC
Q 009560 431 LQALNNA-NGPLVFIGEWVNEWNVTS----GTQK----DYQDFGSAQLEVYNA--ASFGWAYWTLKNDRKHWDFEWNIRN 499 (532)
Q Consensus 431 ~~~~~~~-~g~pv~vGEwG~~~~~~~----a~~~----~~~~~~~~ql~~~~~--~~~Gw~yW~~k~e~~~Ws~~~~~~~ 499 (532)
+..+.++ +.+||+|.|-|....... -..+ -++.++.+++.+.+. .-.|.++|++-. +-.|..--..+-
T Consensus 346 L~~l~~~Y~~~pI~ITENG~~~~~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~D-n~Ew~~Gy~~rf 424 (455)
T PF00232_consen 346 LRYLKDRYGNPPIYITENGIGDPDEVDDGKVDDDYRIDYLQDHLNQVLKAIEDGVNVRGYFAWSLLD-NFEWAEGYKKRF 424 (455)
T ss_dssp HHHHHHHHTSSEEEEEEE---EETTCTTSHBSHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEETSB----BGGGGGGSE-
T ss_pred hhhhccccCCCcEEEecccccccccccccCcCcHHHHHHHHHHHHHHHhhhccCCCeeeEeeecccc-ccccccCccCcc
Confidence 3344343 349999999998643210 0112 235566666666643 336999999987 444554445566
Q ss_pred CcccCC
Q 009560 500 NYLQLG 505 (532)
Q Consensus 500 g~~~~~ 505 (532)
|++--+
T Consensus 425 Gl~~VD 430 (455)
T PF00232_consen 425 GLVYVD 430 (455)
T ss_dssp -SEEEE
T ss_pred CceEEc
Confidence 666533
No 246
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=40.82 E-value=34 Score=34.57 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=40.5
Q ss_pred CHHHHHHHHHcCCCEEEEccccccc-cCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEE
Q 009560 227 TIEDFNFLYRHGINTVRIPVGWWIA-FDPDPPAPFIGGSLEALDNALSWAEAYNIKCIID 285 (532)
Q Consensus 227 te~d~~~la~~G~N~VRIpv~ww~~-~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILD 285 (532)
.+.+++.+++.|++.|||.++-... .....+.. .+..++.+.++++.|+++|+.|.+.
T Consensus 80 ~~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~-~~~~~~~~~~~i~~ak~~G~~v~~~ 138 (273)
T cd07941 80 EDPNLQALLEAGTPVVTIFGKSWDLHVTEALGTT-LEENLAMIRDSVAYLKSHGREVIFD 138 (273)
T ss_pred chHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCC-HHHHHHHHHHHHHHHHHcCCeEEEe
Confidence 3568899999999999997643211 00001101 2347888999999999999999885
No 247
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=40.74 E-value=32 Score=35.05 Aligned_cols=61 Identities=15% Similarity=-0.026 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEc
Q 009560 226 ITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDL 286 (532)
Q Consensus 226 ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDl 286 (532)
.+++|++...+.|++.|-+.++-........-..=.+..++.+.+++++|+++|++|-+.+
T Consensus 75 ~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 75 ANKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3689999999999999988764322111000011134589999999999999999998877
No 248
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=40.74 E-value=2.1e+02 Score=23.59 Aligned_cols=86 Identities=16% Similarity=0.242 Sum_probs=42.4
Q ss_pred CCeEEEEecC-CCceeEE-cCCCCCCcceEEEEEecCCeEEEEecCCeEEEEeCC--CceEEEeecCC-CCCceEEEEEc
Q 009560 76 LEKYVCAESG-GGTDVSV-TRDVASSWETFTLWRVSESEFQFRTSQGQFLTCDGE--GCVVSATAKSP-STPETFEIERN 150 (532)
Q Consensus 76 ~~~yv~ae~g-g~~~l~a-nr~~~~~wE~f~~~~~~~~~~~lr~~~~~~v~~~~~--g~~~~a~~~~~-~~~e~F~~v~~ 150 (532)
.|+.+.+..+ .+..|+. .......-..|.+.. ++.+.++. .+..+.+.+. |.+++...-.. ...+.|++..+
T Consensus 9 ~~~cL~~~~~~~~~~v~~~~c~~~~~~Q~W~~~~--~g~~~~~~-~~~Cl~~~~~~~~~~~~~~~c~~~~~~Q~W~~~~~ 85 (124)
T cd00161 9 TGLCLDVNGGSDGGPVQLYPCHGNGNNQKWTLTS--DGTIRIKS-SNLCLDVGGDAPGSKVRLYTCSGGSDNQRWTFNKD 85 (124)
T ss_pred CCeEEECCCCCCCCEEEEEECCCCCccCCEEEeC--CCeEEEcC-CCeEEcccCCCCCCEEEEEECCCCCcCCEEEECCC
Confidence 6777766654 1234433 332222334444222 56676664 5666655443 23454444444 66788887654
Q ss_pred CCCcEEEEecCCceEEe
Q 009560 151 NDSRVHIKLKSGTYLQA 167 (532)
Q Consensus 151 ~~~~v~i~a~nG~~l~a 167 (532)
++++.+. .++-|.+
T Consensus 86 --~~i~~~~-~~~cl~~ 99 (124)
T cd00161 86 --GTIRNLK-SGKCLDV 99 (124)
T ss_pred --cEEEECC-CCeEEeC
Confidence 4454333 3444433
No 249
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=40.66 E-value=2.8e+02 Score=26.42 Aligned_cols=115 Identities=15% Similarity=0.110 Sum_probs=69.4
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCC-CCCCCCCCCCCCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAA-PGSQNGMEHSASRDGTT 306 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~-pGsqn~~~~sg~~~g~~ 306 (532)
.-|++.+++.|++.|=|-- .+ +..|.. ..+.+-.+.|++.||.|=. .|-+ |.
T Consensus 19 ~IDw~~v~~~gi~Fv~iKA-----TE---G~~~~D---~~f~~n~~~A~~~Gl~vGa-YHf~~~~--------------- 71 (190)
T cd06419 19 YIDFNSLQSNGISFVYLRA-----TQ---GASYFD---DNFLSNFSRAQGTGLSVGV-IHTFSFS--------------- 71 (190)
T ss_pred ccCHHHHHhCCCeEEEEEe-----ec---CCCccC---hhHHHHHHHHHHCCCCEEE-EEEeecC---------------
Confidence 4578999999988775532 12 222221 2456777889999987643 2211 10
Q ss_pred CCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEe
Q 009560 307 DWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVC 376 (532)
Q Consensus 307 ~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~ 376 (532)
....++...+++.+...-.+-|-++-+|.-. .. ..+.+.+.+++++.++.|+++....+||-.
T Consensus 72 ----~~~~~QA~~F~~~v~~~~~~lp~vlD~E~~~--~~-~~~~~~~~~~~~~fl~~ve~~~g~~piIYt 134 (190)
T cd06419 72 ----STAAAQYRYFIRKVGNNTGNLPIAIYVSYYG--DY-NPDTKKSTQKLGLLVQLLEQHYNQSVIIRG 134 (190)
T ss_pred ----CCHHHHHHHHHHhCCCCCCCCCeEEEEecCC--CC-CCCHHHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 1233455566666554434555555555422 11 135678999999999999998777776654
No 250
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=40.33 E-value=1.6e+02 Score=30.45 Aligned_cols=141 Identities=18% Similarity=0.146 Sum_probs=81.7
Q ss_pred hccccCCHHHHHHHHHcCCCEEEE-ccccccccCCC------------------CC----CCC--CcChHHHHHHHHHHH
Q 009560 221 HRNTFITIEDFNFLYRHGINTVRI-PVGWWIAFDPD------------------PP----APF--IGGSLEALDNALSWA 275 (532)
Q Consensus 221 hw~t~ite~d~~~la~~G~N~VRI-pv~ww~~~~~~------------------~~----~~~--~~~~l~~Ld~~v~~a 275 (532)
||..+| ++-++.|++.|++.|-+ |+.- ...... +. .+| .+.+++.+-+.|..+
T Consensus 97 y~~P~i-~~~l~~l~~~g~~~ivvlPLyP-qyS~~ttgs~~~~~~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~i~~~ 174 (316)
T PF00762_consen 97 YGPPSI-EDALEELKADGVDRIVVLPLYP-QYSSSTTGSYLDEVERALKKSRPNPKVRFIPSFYDHPAYIEALAERIREA 174 (316)
T ss_dssp SSSSBH-HHHHHHHHHTT-SEEEEEESSS-S--TTTHHHHHHHHHHHHHHTHSSSEEEEE---TT-HHHHHHHHHHHHHH
T ss_pred cCCCCH-HHHHHHHHHcCCCeEEEEeCCC-chhHhhHHHHHHHHHHHHHhcCCCCeEEEeCCccCCHHHHHHHHHHHHHH
Confidence 455555 88999999999998875 4311 111100 00 011 233566666655554
Q ss_pred HHc-----CCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCCc
Q 009560 276 EAY-----NIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVPL 350 (532)
Q Consensus 276 ~k~-----Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~~ 350 (532)
.+. +..+|+..|..|-+.- ... | +.+.++..+..+.|+++..-....++|+----| .
T Consensus 175 l~~~~~~~~~~llfSaHglP~~~~--~~~----G------dpY~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~------~ 236 (316)
T PF00762_consen 175 LERFPRGEPDHLLFSAHGLPQRYV--EDK----G------DPYPAQCEETARLIAERLGLPEWRLAFQSRFGP------G 236 (316)
T ss_dssp HTTS-HCCCEEEEEEEE--BHHHH--TCC----T-------SHHHHHHHHHHHHHHHTTTSSEEEEEES-SSS------S
T ss_pred HHhcCCCCCCEEEEccCCCCcccc--ccC----C------CChHHHHHHHHHHHHHHcCCCceEEEEECCCCC------C
Confidence 443 4899999999885321 001 1 246777777778888888655566777765333 2
Q ss_pred ccHHHHHHHHHHHHHhhCCCcEEEEeCCCCC
Q 009560 351 DILVPYYKQGYQIVRKYSPTAYVIVCQRIGN 381 (532)
Q Consensus 351 ~~l~~~~~~~~~aIR~~~~~~~Viv~~~~~~ 381 (532)
+.+....++.++.+.+.+-++++++..+|-+
T Consensus 237 ~WL~P~~~~~l~~l~~~G~~~V~v~p~gFv~ 267 (316)
T PF00762_consen 237 EWLGPSTEDVLEELAKEGVKRVVVVPPGFVS 267 (316)
T ss_dssp -BSSSBHHHHHHHHHHCT-SEEEEEETT-SS
T ss_pred CCccccHHHHHHHHHhcCCCeEEEECCcccc
Confidence 3445566788888888888899999988753
No 251
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=39.77 E-value=4.3e+02 Score=31.04 Aligned_cols=149 Identities=11% Similarity=0.050 Sum_probs=83.0
Q ss_pred cccCCHHHHHHHHHcC------CCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCC----
Q 009560 223 NTFITIEDFNFLYRHG------INTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGS---- 292 (532)
Q Consensus 223 ~t~ite~d~~~la~~G------~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGs---- 292 (532)
.++-+|+++....+.. +.++++-+..|. +.-..-.+++..+-..+.+++..++.||++|+-+.-.-..
T Consensus 274 ~~~~~e~~v~~~i~~~~~~~IP~d~~~lD~~~~~--~~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~ 351 (772)
T COG1501 274 YTYYDEDEVLEFIDEMRERDIPLDVFVLDIDFWM--DNWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPL 351 (772)
T ss_pred cccccHHHHHHHHhhcccccCcceEEEEeehhhh--ccccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCch
Confidence 3445566666654433 567777664121 1222234555666667899999999999999877633110
Q ss_pred -----CCCCC---CCCCC---------CCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCC------
Q 009560 293 -----QNGME---HSASR---------DGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVP------ 349 (532)
Q Consensus 293 -----qn~~~---~sg~~---------~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~------ 349 (532)
.+|+- ..|.. ....++.+|+.++-+.+ ...+.+.+......|-=+|||......
T Consensus 352 ~~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~---~~~~~l~d~Gv~g~W~D~nEp~~~~~~~~~~g~ 428 (772)
T COG1501 352 FKEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWAS---DKKKNLLDLGVDGFWNDMNEPEPFDGDGFGNGI 428 (772)
T ss_pred HHHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHH---HHHhHHHhcCccEEEccCCCCcccccccccccc
Confidence 01110 00100 11223445554444433 455556665555557789999764211
Q ss_pred ------cccHHHHHHHHHHHHHhhCCC-cEEEEe
Q 009560 350 ------LDILVPYYKQGYQIVRKYSPT-AYVIVC 376 (532)
Q Consensus 350 ------~~~l~~~~~~~~~aIR~~~~~-~~Viv~ 376 (532)
.-.-.-+.+..++++|+..++ ++++++
T Consensus 429 ~~~~~~N~yp~~~~~a~~~~~~~~~~~~r~~~ls 462 (772)
T COG1501 429 DHEEMHNLYPLLYAKAVYEALKELGGNERPFILS 462 (772)
T ss_pred CHHHHhcchhHHHHHHHHHHHHhhcCCCceEEEE
Confidence 112345677889999999654 666665
No 252
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=39.72 E-value=67 Score=33.59 Aligned_cols=48 Identities=19% Similarity=0.260 Sum_probs=38.7
Q ss_pred CHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 227 TIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 227 te~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
+.+|++...+.|+..|||.++.. -.+...+.++++++.|+.|...+-.
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~--------------e~d~~~~~i~~ak~~G~~v~~~l~~ 136 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCT--------------EADVSEQHIGMARELGMDTVGFLMM 136 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccc--------------hHHHHHHHHHHHHHcCCeEEEEEEc
Confidence 57899999999999999977421 1235789999999999999887754
No 253
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.57 E-value=38 Score=32.19 Aligned_cols=33 Identities=15% Similarity=0.394 Sum_probs=26.2
Q ss_pred CCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCC
Q 009560 260 FIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQN 294 (532)
Q Consensus 260 ~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn 294 (532)
..+...+-+.++=.||+++||-|+-+.| ||+|+
T Consensus 52 ~~~~li~Ni~~Lr~~~~~~giPVvyTaq--p~~qs 84 (218)
T COG1535 52 LMEQLIANIAKLRIWCKQAGIPVVYTAQ--PGEQS 84 (218)
T ss_pred cHHHHHHHHHHHHHHHHHcCCcEEEEec--CCcCC
Confidence 3455677777888999999999999987 67664
No 254
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=39.15 E-value=1.4e+02 Score=26.82 Aligned_cols=84 Identities=17% Similarity=0.139 Sum_probs=54.8
Q ss_pred cCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhC--CCCcEEEEEeccCCCCCCCCcccHHH
Q 009560 278 YNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYA--KHPALLGIELLNEPSAATVPLDILVP 355 (532)
Q Consensus 278 ~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~--~~p~v~g~EL~NEP~~~~~~~~~l~~ 355 (532)
....+|+..|..|=+.- ..| +.+.++..+..+.|+++.. ..+..++|+-.-=| .+.+..
T Consensus 17 ~~~~llfsaHgiP~~~~-------~~g------d~Y~~~~~~~~~~v~~~l~~~~~~~~~~fqS~~g~------~~Wl~P 77 (135)
T cd00419 17 EKDRLLFSAHGLPVRDI-------KKG------DPYPDQCEETARLVAERLGLPFDEYELAYQSRFGP------GEWLEP 77 (135)
T ss_pred CCCEEEEEcCCCHHHHh-------hCC------CCHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCC------CCCCCC
Confidence 57899999999873211 011 3567888888889999887 54555666642212 122344
Q ss_pred HHHHHHHHHHhhCCCcEEEEeCCCC
Q 009560 356 YYKQGYQIVRKYSPTAYVIVCQRIG 380 (532)
Q Consensus 356 ~~~~~~~aIR~~~~~~~Viv~~~~~ 380 (532)
...++++.+.+.+-++++++..+|-
T Consensus 78 ~~~~~l~~l~~~G~~~i~v~p~gF~ 102 (135)
T cd00419 78 STDDALEELAKEGVKNVVVVPIGFV 102 (135)
T ss_pred CHHHHHHHHHHcCCCeEEEECCccc
Confidence 4567777777777788888877664
No 255
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=38.76 E-value=3.2e+02 Score=29.29 Aligned_cols=146 Identities=17% Similarity=0.217 Sum_probs=73.4
Q ss_pred HHHHHHHHcCCCEEEEccccccccCCC--CCCCC--CcChH-HHHHHHHHHHHHcCCEEEEEcCC---CCCCCCCCCCCC
Q 009560 229 EDFNFLYRHGINTVRIPVGWWIAFDPD--PPAPF--IGGSL-EALDNALSWAEAYNIKCIIDLHA---APGSQNGMEHSA 300 (532)
Q Consensus 229 ~d~~~la~~G~N~VRIpv~ww~~~~~~--~~~~~--~~~~l-~~Ld~~v~~a~k~Gi~VILDlH~---~pGsqn~~~~sg 300 (532)
+.++.++++|++.+=|-=+|....+.. .-+.+ ++..+ +-|..+++.+++.||+.=|=+-- .|+|.--..|+.
T Consensus 62 ~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l~~~hPd 141 (394)
T PF02065_consen 62 ELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVSPDSDLYREHPD 141 (394)
T ss_dssp HHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEESSSCHCCSSBG
T ss_pred HHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccccchhHHHHhCcc
Confidence 445667889999999988986432211 00011 11122 22788889999999987663310 122211111110
Q ss_pred ------------CCCC-CCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEec---cCCCCCCCCcccHHHHH---HHHH
Q 009560 301 ------------SRDG-TTDWPASDYISQTLDVIDFLASRYAKHPALLGIELL---NEPSAATVPLDILVPYY---KQGY 361 (532)
Q Consensus 301 ------------~~~g-~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~---NEP~~~~~~~~~l~~~~---~~~~ 361 (532)
.+.. ..+..+|+.++...+.+..+.+.++ -.. +=+|-. .|+..+..+ +.+.++. .+++
T Consensus 142 w~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g-idY-iK~D~n~~~~~~~~~~~~-~~~~~~~~~~y~l~ 218 (394)
T PF02065_consen 142 WVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG-IDY-IKWDFNRDITEAGSPSLP-EGYHRYVLGLYRLL 218 (394)
T ss_dssp GBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT--SE-EEEE-TS-TTS-SSTTS--GHHHHHHHHHHHHH
T ss_pred ceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC-CCE-EEeccccCCCCCCCCCch-HHHHHHHHHHHHHH
Confidence 0000 0123357888888888888777664 222 225542 333332222 2333333 3588
Q ss_pred HHHHhhCCCcEEEEeC
Q 009560 362 QIVRKYSPTAYVIVCQ 377 (532)
Q Consensus 362 ~aIR~~~~~~~Viv~~ 377 (532)
+++|+..|+..|-.+.
T Consensus 219 ~~L~~~~P~v~iE~Cs 234 (394)
T PF02065_consen 219 DRLRARFPDVLIENCS 234 (394)
T ss_dssp HHHHHHTTTSEEEE-B
T ss_pred HHHHHhCCCcEEEecc
Confidence 8999999997766653
No 256
>PF03498 CDtoxinA: Cytolethal distending toxin A/C family; InterPro: IPR003558 Escherichia coli, Haemophilus spp and Campylobacter spp. all produce a toxin that is seen to cause distension in certain cell lines [, ], which eventually disintegrate and die. This novel toxin, termed cytolethal distending toxin (cdt), has three subunits: A, B and C. Their sizes are approx. 27.7, 29.5 and 19.9kDa respectively [], and they appear to be entirely novel []. Further research on the complete toxin has revealed that it blocks the cell cycle at stage G2, through inactivation of the cyclin-dependent kinase Cdk1, and without induction of DNA breaks. This leads to multipolar abortive mitosis and micronucleation, associated with centrosomal amplification []. The roles of each subunit are unclear, but it is believed that they have separate roles in pathogenicity. This entry represents the A and C subunits.; GO: 0009405 pathogenesis; PDB: 2F2F_A 1SR4_C.
Probab=38.65 E-value=1.2e+02 Score=27.90 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=39.1
Q ss_pred cccceEEEEEecCCeEEEEecCCCceeEEcCCCCCCcceEEEEEecCCeEEEEe-cCCeEEEEeCCC
Q 009560 64 LDGTQVQIKSVTLEKYVCAESGGGTDVSVTRDVASSWETFTLWRVSESEFQFRT-SQGQFLTCDGEG 129 (532)
Q Consensus 64 ~~g~~v~~~s~~~~~yv~ae~gg~~~l~anr~~~~~wE~f~~~~~~~~~~~lr~-~~~~~v~~~~~g 129 (532)
.++..|+||...++.=+.+- +.|...+.+-+.-..=.-|+++-.+.+.|++|+ .+|+=+......
T Consensus 49 ~~~g~Vqf~n~~~~~CL~~~-~~G~~~~~~C~~~~~~q~F~iiPtttgAVQIks~~~~~Cl~~~~~~ 114 (150)
T PF03498_consen 49 FPFGYVQFVNPKTGTCLAAY-GNGVFHYKSCDQDNLEQVFSIIPTTTGAVQIKSLSTGECLQTFNNS 114 (150)
T ss_dssp STTCEEEEEETTTSEEEEEE-TTCEEEE--TTTCHGHH-EEEEEBTTS-EEEEETTT--EEEE-STT
T ss_pred CCCCEEEEEcCCCCcceeec-CCCeEeecccCCCChhceEEEEEcCCCcEEEEecCCCceEEecCCC
Confidence 35689999999999955552 223444443222222345888889999999999 667666655444
No 257
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=38.58 E-value=77 Score=33.19 Aligned_cols=48 Identities=17% Similarity=0.315 Sum_probs=39.2
Q ss_pred CHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 227 TIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 227 te~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
+.+|++...+.|++.|||.++.. -.+.+.+.++++++.|+.|.+.+-.
T Consensus 90 ~~~dl~~a~~~gvd~iri~~~~~--------------e~~~~~~~i~~ak~~G~~v~~~l~~ 137 (337)
T PRK08195 90 TVDDLKMAYDAGVRVVRVATHCT--------------EADVSEQHIGLARELGMDTVGFLMM 137 (337)
T ss_pred cHHHHHHHHHcCCCEEEEEEecc--------------hHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 57899999999999999976431 1245789999999999999988764
No 258
>PRK12435 ferrochelatase; Provisional
Probab=37.91 E-value=4.8e+02 Score=26.98 Aligned_cols=99 Identities=14% Similarity=0.096 Sum_probs=58.2
Q ss_pred ChHHHHHHHHHHHHH-------cCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEE
Q 009560 263 GSLEALDNALSWAEA-------YNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALL 335 (532)
Q Consensus 263 ~~l~~Ld~~v~~a~k-------~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~ 335 (532)
.+++.+-+.|+.+.+ ....+|+..|..|=+.- .. | +.+.++..+..+.++++.+-....+
T Consensus 151 ~yi~a~a~~I~~~l~~~~~~~~~~~~llfSaHslP~~~i---~~----G------DpY~~q~~~t~~~v~~~l~~~~~~l 217 (311)
T PRK12435 151 KFIQYWADQIKETFAQIPEEEREKAVLIVSAHSLPEKII---AA----G------DPYPDQLEETADLIAEQANVEHYAI 217 (311)
T ss_pred HHHHHHHHHHHHHHHHcCcccccceEEEEecCCCchhHh---hC----C------CCHHHHHHHHHHHHHHHcCCCCCeE
Confidence 355655555543322 23689999999884321 01 1 2466777777777777765444566
Q ss_pred EEEec-cCCCCCCCCcccHHHHHHHHHHHHHhh-CCCcEEEEeCCCC
Q 009560 336 GIELL-NEPSAATVPLDILVPYYKQGYQIVRKY-SPTAYVIVCQRIG 380 (532)
Q Consensus 336 g~EL~-NEP~~~~~~~~~l~~~~~~~~~aIR~~-~~~~~Viv~~~~~ 380 (532)
+|+-- -- +.+.+.....+.+..+.+. +-.+.+++..+|-
T Consensus 218 ~yQSr~~g------~~~WL~P~t~d~l~~l~~~~G~k~v~vvpigFv 258 (311)
T PRK12435 218 GWQSEGNT------PDPWLGPDVQDLTRDLYEEHGYKSFIYTPVGFV 258 (311)
T ss_pred eeecCCCC------CCCCCCCCHHHHHHHHHHhcCCceEEEECCchh
Confidence 77752 11 1223455556666666655 6677788877774
No 259
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=37.31 E-value=3.3e+02 Score=26.52 Aligned_cols=124 Identities=17% Similarity=0.124 Sum_probs=71.1
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTD 307 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~ 307 (532)
|..+..+|+.|.|-.=|+ | -|+ +.-..+=+.|+|+||..|.=.- |
T Consensus 113 e~~iq~ak~aGanGfiiv-------D-lPp--------EEa~~~Rne~~k~gislvpLva--P----------------- 157 (268)
T KOG4175|consen 113 ENYIQVAKNAGANGFIIV-------D-LPP--------EEAETLRNEARKHGISLVPLVA--P----------------- 157 (268)
T ss_pred HHHHHHHHhcCCCceEec-------c-CCh--------HHHHHHHHHHHhcCceEEEeeC--C-----------------
Confidence 666777788888866542 1 121 1233445789999988776322 1
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCchhh
Q 009560 308 WPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQRIGNADPLEL 387 (532)
Q Consensus 308 W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~~~~~~~~~~~ 387 (532)
...++-.+++..+++-|- .++. - .+.+...+..++-.+..++.||+...+.++-++-+. +.+..+
T Consensus 158 ----sTtdeRmell~~~adsFi---YvVS--r----mG~TG~~~svn~~l~~L~qrvrk~t~dtPlAVGFGv--st~EHf 222 (268)
T KOG4175|consen 158 ----STTDERMELLVEAADSFI---YVVS--R----MGVTGTRESVNEKLQSLLQRVRKATGDTPLAVGFGV--STPEHF 222 (268)
T ss_pred ----CChHHHHHHHHHhhcceE---EEEE--e----ccccccHHHHHHHHHHHHHHHHHhcCCCceeEeecc--CCHHHH
Confidence 122233344445554432 1211 1 111234567888889999999999999999887443 344555
Q ss_pred hhccCCCCcEEEEe
Q 009560 388 YQANIGLHNIVVDL 401 (532)
Q Consensus 388 ~~~~~~~~nvv~s~ 401 (532)
.+...-.+.+|+.-
T Consensus 223 ~qVgsvaDGVvvGS 236 (268)
T KOG4175|consen 223 KQVGSVADGVVVGS 236 (268)
T ss_pred HhhhhhccceEecH
Confidence 55433345555543
No 260
>PRK10425 DNase TatD; Provisional
Probab=37.04 E-value=2.1e+02 Score=28.68 Aligned_cols=47 Identities=19% Similarity=0.101 Sum_probs=32.8
Q ss_pred CcEEEeccCcccCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEcccC
Q 009560 440 PLVFIGEWVNEWNVTSGTQKDYQDFGSAQLEVYNAASFGWAYWTLKN 486 (532)
Q Consensus 440 ~pv~vGEwG~~~~~~~a~~~~~~~~~~~ql~~~~~~~~Gw~yW~~k~ 486 (532)
..+-|||-|..+.....+.+...+++++|++...+.+..-...+-+.
T Consensus 85 ~~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r~a 131 (258)
T PRK10425 85 EVVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHCRDA 131 (258)
T ss_pred CEEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCc
Confidence 34679999987643233455566888888888887777777776543
No 261
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=36.66 E-value=1e+02 Score=31.90 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCCEEEEccccccccCCCCCCCCC-cChHHHHHHHHHHHHHcCC-EEEEEc
Q 009560 229 EDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFI-GGSLEALDNALSWAEAYNI-KCIIDL 286 (532)
Q Consensus 229 ~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~-~~~l~~Ld~~v~~a~k~Gi-~VILDl 286 (532)
+..+.|+++|++.|.|++.- .+++....+. .+.++.+-+.++.+++.|+ .|.|+.
T Consensus 105 ~~~~~L~~aGl~~v~ISlDs---~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~ 161 (329)
T PRK13361 105 RFAAELADAGLKRLNISLDT---LRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNA 161 (329)
T ss_pred HHHHHHHHcCCCeEEEEecc---CCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEE
Confidence 56788999999999998842 2222111111 2468888889999999999 676654
No 262
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=36.26 E-value=2.2e+02 Score=30.88 Aligned_cols=98 Identities=12% Similarity=0.269 Sum_probs=57.3
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCC-cChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCC
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFI-GGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRD 303 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~-~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~ 303 (532)
-++++|+++|.+.++.=+.|+|+- .+|+--..+. ...-..+-+.+++..++||.+...+-..||--
T Consensus 125 Nl~~~d~~RI~~~~lspl~iSVha---t~p~lR~~ll~n~~a~~il~~l~~l~~~~I~~h~qiVlcPGiN---------- 191 (433)
T TIGR03279 125 NLPPAEWQRIEQLRLSPLYVSVHA---TEPSLRARLLKNPRAGLILEQLKWFQERRLQLHAQVVVCPGIN---------- 191 (433)
T ss_pred CCCHHHHHHHHHcCCCCEEEEEec---CCHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEEEEEEcCCcC----------
Confidence 357999999999999999999853 3332110111 11234555666777788877666666666521
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCC
Q 009560 304 GTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSA 345 (532)
Q Consensus 304 g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~ 345 (532)
+.+..+++++.+..+.. +++|.+...-+. |.+
T Consensus 192 ------Dg~~L~~Ti~dL~~~~~--~~~P~v~S~avV--PVG 223 (433)
T TIGR03279 192 ------DGKHLERTLRDLAQFHD--GDWPTVLSVAVV--PVG 223 (433)
T ss_pred ------CHHHHHHHHHHHHhhcc--cCCCceeEEEEE--ccc
Confidence 12445555544444422 456666554444 554
No 263
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=36.10 E-value=1.1e+02 Score=36.19 Aligned_cols=70 Identities=16% Similarity=0.324 Sum_probs=41.8
Q ss_pred cChHHHHHHHHHHHHHcCCEEEEEcC-CCCCCCCC--CCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEE
Q 009560 262 GGSLEALDNALSWAEAYNIKCIIDLH-AAPGSQNG--MEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIE 338 (532)
Q Consensus 262 ~~~l~~Ld~~v~~a~k~Gi~VILDlH-~~pGsqn~--~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~E 338 (532)
.+.++.|..+|+.+++.||+||--+. ..||..|. +...|. ........++.++.+.+.| |+++
T Consensus 804 ~~~~~~l~~~i~~~~~~~~~~ig~~~p~~p~y~~t~~fg~~g~--------~rs~a~~~~~~~~~~~~~y---~~f~--- 869 (912)
T TIGR02171 804 NENMNSLKAFIDETAKKGVKVIGTIFPQSPGYKNTGSFGRYGP--------RRSIAKKIIDSFKKMEKTY---PHFI--- 869 (912)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEECCCCCCccccCcccccCc--------chhhHHHHHHHHHHHHhhC---CceE---
Confidence 45699999999999999999998765 33543221 111111 1233344445555555555 4444
Q ss_pred eccCCCC
Q 009560 339 LLNEPSA 345 (532)
Q Consensus 339 L~NEP~~ 345 (532)
|++|=..
T Consensus 870 ~~denk~ 876 (912)
T TIGR02171 870 LFDENKD 876 (912)
T ss_pred EEecCcC
Confidence 7888544
No 264
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=36.08 E-value=1.1e+02 Score=30.72 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=42.0
Q ss_pred HHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCC
Q 009560 230 DFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAA 289 (532)
Q Consensus 230 d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~ 289 (532)
.-+.++++|++.+|=.. | .+.+.+..|.+-.++-|+.+.+.|++.||.++-+.|..
T Consensus 34 ~a~~~~~~g~~~~r~g~--~--kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~d~ 89 (250)
T PRK13397 34 AASSAKKLGYNYFRGGA--Y--KPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIMSE 89 (250)
T ss_pred HHHHHHHcCCCEEEecc--c--CCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeCCH
Confidence 33448899999999754 2 22233445555578899999999999999999999963
No 265
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=35.80 E-value=3.8e+02 Score=26.91 Aligned_cols=93 Identities=20% Similarity=0.166 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCC---EEEEEcCCCCCCCCCCCCCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNI---KCIIDLHAAPGSQNGMEHSASRDG 304 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi---~VILDlH~~pGsqn~~~~sg~~~g 304 (532)
++.+..+++.|...|=++.+- ... |.. .++.++.+.+.++.|.++|+ .+|+|.-..|-+.
T Consensus 106 ~~~~~l~~~~g~~vv~m~~~~----~g~-P~t-~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~~~~----------- 168 (261)
T PRK07535 106 EVVLPLVKKYNAPVVALTMDD----TGI-PKD-AEDRLAVAKELVEKADEYGIPPEDIYIDPLVLPLSA----------- 168 (261)
T ss_pred HHHHHHHHHhCCCEEEEecCC----CCC-CCC-HHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCcccC-----------
Confidence 456777899999998776531 111 111 23468889999999999999 8999965532100
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Q 009560 305 TTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPS 344 (532)
Q Consensus 305 ~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~ 344 (532)
+.+..-...+.++.+.++|.+.|-++| +-|=-.
T Consensus 169 -----~~~~~~~~l~~i~~l~~~~pg~p~l~G--~Sn~Sf 201 (261)
T PRK07535 169 -----AQDAGPEVLETIRRIKELYPKVHTTCG--LSNISF 201 (261)
T ss_pred -----ChHHHHHHHHHHHHHHHhCCCCCEEEE--eCCCcc
Confidence 112233456777778887777787776 555443
No 266
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=35.70 E-value=1e+02 Score=30.75 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=37.9
Q ss_pred CHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcC
Q 009560 227 TIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLH 287 (532)
Q Consensus 227 te~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH 287 (532)
..+|++..++.|++.|||.++-. ....+.++++++++.|+.|.+.+-
T Consensus 87 ~~~~i~~a~~~g~~~iri~~~~s--------------~~~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 87 TVDDLKMAADLGVDVVRVATHCT--------------EADVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred CHHHHHHHHHcCCCEEEEEechh--------------hHHHHHHHHHHHHHCCCeEEEEEE
Confidence 47899999999999999966321 124578899999999999999874
No 267
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=35.34 E-value=1.1e+02 Score=31.98 Aligned_cols=72 Identities=15% Similarity=0.040 Sum_probs=48.5
Q ss_pred HHHHHHhhccc-------cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEE
Q 009560 214 AKEVLKRHRNT-------FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIID 285 (532)
Q Consensus 214 a~~~~~~hw~t-------~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILD 285 (532)
..+.++++|+. -.|.++.+.+.++|.+.|++.++-=..-....-.-.--..+..+-++.+.++++++.||.|
T Consensus 140 ~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaD 218 (343)
T TIGR01305 140 FVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISD 218 (343)
T ss_pred HHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEc
Confidence 44556677752 2489999999999999999987531110000000000027888999999999999999997
No 268
>PRK15108 biotin synthase; Provisional
Probab=35.09 E-value=5.5e+02 Score=26.86 Aligned_cols=130 Identities=14% Similarity=0.135 Sum_probs=74.1
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCC-CcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCC
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF-IGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRD 303 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~-~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~ 303 (532)
.++++.++.|+++|++.+-+.+.- .+.-.... ....++..-+.++.|++.|+.+-.. ..-|
T Consensus 133 ~ls~e~l~~LkeAGld~~n~~leT----~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg--~i~G------------ 194 (345)
T PRK15108 133 TLSESQAQRLANAGLDYYNHNLDT----SPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSG--GIVG------------ 194 (345)
T ss_pred cCCHHHHHHHHHcCCCEEeecccc----ChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeE--EEEe------------
Confidence 467999999999999988776521 22212222 2346777778889999999865332 2211
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCC-c-ccHHHHHHHHHHHHHhhCCCcEEEEeCCC
Q 009560 304 GTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVP-L-DILVPYYKQGYQIVRKYSPTAYVIVCQRI 379 (532)
Q Consensus 304 g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~-~-~~l~~~~~~~~~aIR~~~~~~~Viv~~~~ 379 (532)
.. +..+..++.+..+.+. .+.+..+.+-.++-+.+.... . ..-..-+-+.+.+.|=.-|+..+-+.++|
T Consensus 195 -lg-----Et~ed~v~~~~~l~~l-~~~~~~ip~~~~~P~~gTpl~~~~~~~~~e~lr~iAi~Rl~lp~~~i~i~~g~ 265 (345)
T PRK15108 195 -LG-----ETVKDRAGLLLQLANL-PTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGR 265 (345)
T ss_pred -CC-----CCHHHHHHHHHHHHhc-cCCCCEEEeCCccCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecccH
Confidence 11 2234445555544433 322333434445332221111 1 11123345788889999999888888776
No 269
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=34.91 E-value=5.4e+02 Score=26.70 Aligned_cols=58 Identities=5% Similarity=-0.010 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCC--CEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 228 IEDFNFLYRHGI--NTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 228 e~d~~~la~~G~--N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
++.++.+++.|| +++=|-+.|+. ....-.++++.+...+++++.+++.|+++++-.|-
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~---~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P 86 (339)
T cd06604 27 REIADEFRERDIPCDAIYLDIDYMD---GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDP 86 (339)
T ss_pred HHHHHHHHHhCCCcceEEECchhhC---CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeC
Confidence 455666677774 45555555532 11122344555556789999999999999987663
No 270
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=33.10 E-value=4.2e+02 Score=28.21 Aligned_cols=99 Identities=13% Similarity=0.206 Sum_probs=59.2
Q ss_pred ChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCCC--CcEEEEEec
Q 009560 263 GSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKH--PALLGIELL 340 (532)
Q Consensus 263 ~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~--p~v~g~EL~ 340 (532)
..++++.+.|+.|++-|-..|+ +| +|. .+.+..... .-.+..+++++.++.+++.-++. .-.+++|.+
T Consensus 112 ~ai~~~kraId~A~eLGa~~v~-v~--~G~-~g~~~~~~~------d~~~a~~~~~e~L~~lae~A~~~G~GV~laLEp~ 181 (382)
T TIGR02631 112 YALRKVLRNMDLGAELGAETYV-VW--GGR-EGAEYDGAK------DVRAALDRMREALNLLAAYAEDQGYGLRFALEPK 181 (382)
T ss_pred HHHHHHHHHHHHHHHhCCCEEE-Ec--cCC-CCCcCcccc------CHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEccC
Confidence 4688999999999999998653 33 221 111111000 01356777888888888766553 245678877
Q ss_pred -cCCCCCCCCcccHHHHHHHHHHHHHhhCCCc--EEEEe
Q 009560 341 -NEPSAATVPLDILVPYYKQGYQIVRKYSPTA--YVIVC 376 (532)
Q Consensus 341 -NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~--~Viv~ 376 (532)
|||... .+..-..++...|++++... -|.+.
T Consensus 182 p~~~~~~-----~ll~T~~~al~li~~v~~pn~vgl~lD 215 (382)
T TIGR02631 182 PNEPRGD-----ILLPTVGHALAFIETLERPELFGLNPE 215 (382)
T ss_pred CCCCCcc-----eecCCHHHHHHHHHHcCCccceeEEEe
Confidence 677532 22233356777788887433 34444
No 271
>PRK09389 (R)-citramalate synthase; Provisional
Probab=32.82 E-value=49 Score=36.51 Aligned_cols=60 Identities=12% Similarity=-0.023 Sum_probs=43.2
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLH 287 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH 287 (532)
++|++.+.+.|.+.|++.++-+...-...-..-.++.++.+.+.+++|+++|+.|.+++-
T Consensus 76 ~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~e 135 (488)
T PRK09389 76 KVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGE 135 (488)
T ss_pred HHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 789999999999999998765432100000011245788888999999999999998764
No 272
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=32.69 E-value=87 Score=34.20 Aligned_cols=48 Identities=13% Similarity=0.080 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcC
Q 009560 226 ITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLH 287 (532)
Q Consensus 226 ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH 287 (532)
+.+++++..++.|++.|||...-.. .+.+..+++.|+++|+.|.+.+-
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd--------------~~n~~~~v~~ak~~G~~v~~~i~ 144 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALND--------------VRNLETAVKATKKAGGHAQVAIS 144 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCc--------------HHHHHHHHHHHHHcCCeEEEEEE
Confidence 4578999999999999999663211 12477899999999999876653
No 273
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=32.49 E-value=5.6e+02 Score=26.21 Aligned_cols=122 Identities=11% Similarity=0.087 Sum_probs=70.5
Q ss_pred HHHHHcCCCEEEEccccccccCCCCCCC-CCc----ChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCC
Q 009560 232 NFLYRHGINTVRIPVGWWIAFDPDPPAP-FIG----GSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTT 306 (532)
Q Consensus 232 ~~la~~G~N~VRIpv~ww~~~~~~~~~~-~~~----~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~ 306 (532)
+.+++.|+++|=|.+-- ... ...+ +.. .....+..-|+.+++.|++|+|.+-...|..
T Consensus 19 ~~~~~~g~~~v~lAFi~---~~~-~~~~~w~g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~------------- 81 (294)
T cd06543 19 TYAAATGVKAFTLAFIV---ASG-GCKPAWGGSYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGTP------------- 81 (294)
T ss_pred HHHHHcCCCEEEEEEEE---cCC-CCcccCCCCCCcccchhHHHHHHHHHHcCCeEEEEecCCCCCc-------------
Confidence 56778999999987631 111 1111 111 1144567778899999999999886543211
Q ss_pred CCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEe
Q 009560 307 DWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVC 376 (532)
Q Consensus 307 ~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~ 376 (532)
.-.+...++++++....+.++|.= ..| =|++-+ |.. .+.+.+. -..++++.+|+..|+..|.+.
T Consensus 82 ~~~~~~~~~~~~~a~~~~i~~y~~-dgi-DfDiE~-~~~--~d~~~~~-~~~~al~~Lq~~~p~l~vs~T 145 (294)
T cd06543 82 LATSCTSADQLAAAYQKVIDAYGL-THL-DFDIEG-GAL--TDTAAID-RRAQALALLQKEYPDLKISFT 145 (294)
T ss_pred cccCcccHHHHHHHHHHHHHHhCC-CeE-EEeccC-Ccc--ccchhHH-HHHHHHHHHHHHCCCcEEEEe
Confidence 011245667777777777788842 222 234433 221 1222233 345667888888887766654
No 274
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=32.33 E-value=60 Score=29.49 Aligned_cols=59 Identities=19% Similarity=0.109 Sum_probs=40.9
Q ss_pred CHHHHHHHHHcCCCEEEEccccccccCCCCCCCC--CcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 227 TIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF--IGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 227 te~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~--~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
+++.++.|+++|+..|.+.+.-. ++.....+ ....++..-+.++.+.++|+.|.+.+--
T Consensus 87 ~~~~~~~l~~~g~~~i~i~le~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 147 (204)
T cd01335 87 TEELLKELKELGLDGVGVSLDSG---DEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLV 147 (204)
T ss_pred CHHHHHHHHhCCCceEEEEcccC---CHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEE
Confidence 68999999999999999988431 11110111 2235677777888888889988887664
No 275
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=32.11 E-value=59 Score=32.70 Aligned_cols=56 Identities=13% Similarity=0.089 Sum_probs=45.6
Q ss_pred HHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCC
Q 009560 230 DFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAP 290 (532)
Q Consensus 230 d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~p 290 (532)
+-+++|+.|-++|.|-|-| +.+.+ ..++..+.+++++...|...+|-.+|.+-.++
T Consensus 116 sa~riK~~G~~avK~Lvy~----~~D~~-e~neqk~a~ierigsec~aedi~f~lE~ltyd 171 (306)
T COG3684 116 SAKRIKEDGGDAVKFLVYY----RSDED-EINEQKLAYIERIGSECHAEDLPFFLEPLTYD 171 (306)
T ss_pred CHHHHHHhcccceEEEEEE----cCCch-HHhHHHHHHHHHHHHHhhhcCCceeEeeeecC
Confidence 4678999999999998865 22332 44666899999999999999999999988764
No 276
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=31.75 E-value=4e+02 Score=24.29 Aligned_cols=107 Identities=16% Similarity=0.170 Sum_probs=60.5
Q ss_pred EEEEEec-CCeEEEEecCCCceeEEcCCCCC----CcceEEEEE--ecCCeEEEEecC--CeEEEEeCCCceEEEeecCC
Q 009560 69 VQIKSVT-LEKYVCAESGGGTDVSVTRDVAS----SWETFTLWR--VSESEFQFRTSQ--GQFLTCDGEGCVVSATAKSP 139 (532)
Q Consensus 69 v~~~s~~-~~~yv~ae~gg~~~l~anr~~~~----~wE~f~~~~--~~~~~~~lr~~~--~~~v~~~~~g~~~~a~~~~~ 139 (532)
+.++|.. .++||...++ ...+.+...+.+ .=.+|.|.. .+.+.|.|.+.| |.|+...+..-.|..+..+.
T Consensus 3 ~~~~s~~~~~ryirh~~~-~~~~~~v~~~s~~~~r~da~f~vvpGLa~~~~vSfES~~~PG~yLrh~~~~v~l~~~d~s~ 81 (142)
T PF05270_consen 3 LRLTSPNYPDRYIRHRGS-LVRLDPVSSSSSALDRADATFRVVPGLADSSCVSFESVNYPGYYLRHSNFRVRLEKNDGSA 81 (142)
T ss_dssp EEEEESSSTTEEEEEETT-EEEEEES-SSGGHHHHHGG-EEEEE-SS-TTCEEEEESSSTTEEEEEETTEEEEEE--SSH
T ss_pred EEEECCCCCCeEEEEcCc-eEEEeeccCCcchhhccCceEEEEEccCCCCEEEEEECCCCCcEEEEECCEEEEeecCCCc
Confidence 4556655 6888877654 233333333333 126788665 446679999977 99998854332333332221
Q ss_pred C--CCceEEEEEc--CCCcEEEEecC--CceEEeccCceEEeCC
Q 009560 140 S--TPETFEIERN--NDSRVHIKLKS--GTYLQATLGNQLTSDY 177 (532)
Q Consensus 140 ~--~~e~F~~v~~--~~~~v~i~a~n--G~~l~a~~~~~v~ad~ 177 (532)
. .--||..+.. ..+.+++++.| |.||.-.. +.|..+.
T Consensus 82 ~F~~dATF~~~~Gl~~~g~~sfeS~n~Pg~ylrh~~-~~l~l~~ 124 (142)
T PF05270_consen 82 LFREDATFCPRPGLAGPGYVSFESYNYPGRYLRHYN-GELYLAP 124 (142)
T ss_dssp HHHHHT-EEEEE-SSSTTEEEEEESSSTTEEEEEET-TEEEEEE
T ss_pred cccCCceEEEecCCCCCCcceEEEecCCCeEEEEEC-CEEEEec
Confidence 0 3457887775 25667999955 99997665 4444443
No 277
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=31.43 E-value=1.3e+02 Score=30.66 Aligned_cols=60 Identities=22% Similarity=0.348 Sum_probs=43.6
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCC--CcChHHHHHHHHHHHHHcCCEEEEEcC
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF--IGGSLEALDNALSWAEAYNIKCIIDLH 287 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~--~~~~l~~Ld~~v~~a~k~Gi~VILDlH 287 (532)
.++++.++.+++.|++.|.|.+.- .++....+. ..+.++..-+.++.+.+.|+.+.+...
T Consensus 105 ~~~~~~~~~l~~~g~~~v~iSid~---~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~~~~~~~ 166 (347)
T COG0535 105 LLTEEVLEKLKEAGLDYVSISLDG---LDPETHDPIRGVKGVFKRAVEAIKNLKEAGILVVINTT 166 (347)
T ss_pred cCCHHHHHHHHhcCCcEEEEEecC---CChhhhhhhcCCCcHHHHHHHHHHHHHHcCCeeeEEEE
Confidence 367899999999999999998853 222221122 245889999999999999997555443
No 278
>COG5341 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.37 E-value=1.7e+02 Score=26.09 Aligned_cols=34 Identities=21% Similarity=0.129 Sum_probs=23.4
Q ss_pred eeeecccCccccccccCCcccccceEEEEEecCCeEEEEecCCCce
Q 009560 44 LVIEGWIKPSLFDGILNGDMLDGTQVQIKSVTLEKYVCAESGGGTD 89 (532)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~g~~v~~~s~~~~~yv~ae~gg~~~ 89 (532)
+|+|=|+.-.++.-+|-++ .|+.|---|+||+-+
T Consensus 39 ~~A~i~v~Gk~~r~i~l~K------------g~~t~~v~~~~g~~n 72 (132)
T COG5341 39 AVAEISVDGKVIRTIPLTK------------GNETFDVKENGGFYN 72 (132)
T ss_pred cEEEEEECCEEEEEEEccc------------CCccEEEEcCCCceE
Confidence 7888888777776555432 467777777877655
No 279
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=31.22 E-value=5.3e+02 Score=25.54 Aligned_cols=94 Identities=15% Similarity=0.287 Sum_probs=55.8
Q ss_pred ChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccC
Q 009560 263 GSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNE 342 (532)
Q Consensus 263 ~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NE 342 (532)
..++.+.++++.|++.|...|+ +|. |... + -..++..+.+++.++.+++.-+...-.+++|...-
T Consensus 82 ~~~~~~~~~i~~A~~lG~~~v~-~~~--g~~~---------~---~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~ 146 (279)
T cd00019 82 KSIERLKDEIERCEELGIRLLV-FHP--GSYL---------G---QSKEEGLKRVIEALNELIDKAETKGVVIALETMAG 146 (279)
T ss_pred HHHHHHHHHHHHHHHcCCCEEE-ECC--CCCC---------C---CCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCC
Confidence 3678888888888888888654 443 2110 0 01246677888999999987766666666665432
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHhhC--CCcEEEEeC
Q 009560 343 PSAATVPLDILVPYYKQGYQIVRKYS--PTAYVIVCQ 377 (532)
Q Consensus 343 P~~~~~~~~~l~~~~~~~~~aIR~~~--~~~~Viv~~ 377 (532)
|.. .+..-...+...|++++ |+.-+++..
T Consensus 147 ~~~------~~~~t~~~~~~li~~v~~~~~~g~~lD~ 177 (279)
T cd00019 147 QGN------EIGSSFEELKEIIDLIKEKPRVGVCIDT 177 (279)
T ss_pred CCC------CCCCCHHHHHHHHHhcCCCCCeEEEEEh
Confidence 211 11112245566677776 545566653
No 280
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=30.80 E-value=74 Score=27.81 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCCEEEEEcCCCCCCCC
Q 009560 268 LDNALSWAEAYNIKCIIDLHAAPGSQN 294 (532)
Q Consensus 268 Ld~~v~~a~k~Gi~VILDlH~~pGsqn 294 (532)
++++++..+++|+.++||+=..|.|++
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~~P~S~~ 28 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRLWPRSRK 28 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCCCC
Confidence 678899999999999999999888763
No 281
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=30.59 E-value=3.6e+02 Score=27.41 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCC--CEEEEccccccccC------CCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCC
Q 009560 228 IEDFNFLYRHGI--NTVRIPVGWWIAFD------PDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAA 289 (532)
Q Consensus 228 e~d~~~la~~G~--N~VRIpv~ww~~~~------~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~ 289 (532)
++-++.+++.|| ++|=|-+.|..... .-..-.+++..+...+++|+.+++.|++|++.+|-.
T Consensus 28 ~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~ 97 (292)
T cd06595 28 LALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPA 97 (292)
T ss_pred HHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCC
Confidence 455556666664 45555555532100 001124455566778899999999999999988854
No 282
>PF11871 DUF3391: Domain of unknown function (DUF3391); InterPro: IPR021812 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 122 to 139 amino acids in length. This domain is found associated with PF01966 from PFAM.
Probab=30.53 E-value=98 Score=26.95 Aligned_cols=20 Identities=35% Similarity=0.371 Sum_probs=17.9
Q ss_pred CHHHHHHHHHcCCCEEEEcc
Q 009560 227 TIEDFNFLYRHGINTVRIPV 246 (532)
Q Consensus 227 te~d~~~la~~G~N~VRIpv 246 (532)
++++|+.|++.|+..|.|-.
T Consensus 37 s~~~I~~L~~~gi~~V~Id~ 56 (128)
T PF11871_consen 37 SQADIEKLRRLGIQEVYIDP 56 (128)
T ss_pred CHHHHHHHHHCCCcEEEEEC
Confidence 48999999999999999854
No 283
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=30.34 E-value=1.5e+02 Score=30.50 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCC-cChHHHHHHHHHHHHHcCC-EEEEEcCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFI-GGSLEALDNALSWAEAYNI-KCIIDLHAAP 290 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~-~~~l~~Ld~~v~~a~k~Gi-~VILDlH~~p 290 (532)
++.++.+++.|++.|.|.+.- .+++....+. ...++.+-+.++.+.+.|+ .|.+.....|
T Consensus 108 ~~~~~~L~~agl~~i~ISlds---~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~ 169 (331)
T PRK00164 108 ARRAAALKDAGLDRVNVSLDS---LDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMK 169 (331)
T ss_pred HHHHHHHHHcCCCEEEEEecc---CCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEEC
Confidence 356788999999999988842 1221111111 1368888899999999998 7777664433
No 284
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=30.30 E-value=1.4e+02 Score=29.48 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=68.2
Q ss_pred CHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHH----HHHHcCCEEEEEcCCCCCCCCCCCCCCCC
Q 009560 227 TIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALS----WAEAYNIKCIIDLHAAPGSQNGMEHSASR 302 (532)
Q Consensus 227 te~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~----~a~k~Gi~VILDlH~~pGsqn~~~~sg~~ 302 (532)
+.+|++.|+..|+..|=-+- .+|.+. ...+..++.+++++. .|.++|+++-+.+---|+.-
T Consensus 13 ~~eDlekMa~sGI~~Vit~A-----hdP~~~-~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr~i--------- 77 (254)
T COG1099 13 GFEDLEKMALSGIREVITLA-----HDPYPM-KTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVHPRAI--------- 77 (254)
T ss_pred cHHHHHHHHHhChhhhhhcc-----cCCCCc-ccHHHHHHHHHHHHccchhhHHhhCceeeEEeccCCCCC---------
Confidence 46999999999999884322 233322 223446777888775 49999998776654333311
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEeCCC
Q 009560 303 DGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQRI 379 (532)
Q Consensus 303 ~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~~~ 379 (532)
|.. +...+..|-+-++ +..|+++. |-.....+.+ =.+.+..-...-|+.+ .+||++..-
T Consensus 78 --------P~e---~~~~l~~L~~~l~-~e~VvAiG---EiGLe~~t~~-E~evf~~QL~LA~e~d--vPviVHTPr 136 (254)
T COG1099 78 --------PPE---LEEVLEELEELLS-NEDVVAIG---EIGLEEATDE-EKEVFREQLELARELD--VPVIVHTPR 136 (254)
T ss_pred --------Cch---HHHHHHHHHhhcc-cCCeeEee---ecccccCCHH-HHHHHHHHHHHHHHcC--CcEEEeCCC
Confidence 111 4455666666666 45565432 2222112333 3444455555556654 567787543
No 285
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=30.25 E-value=70 Score=34.25 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=42.2
Q ss_pred hhccccCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcC
Q 009560 220 RHRNTFITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLH 287 (532)
Q Consensus 220 ~hw~t~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH 287 (532)
+||+..+.|.-+++..++|++.+|| ....++ .+-+...++.++|+|..|...+.
T Consensus 93 rhyaDDvVe~Fv~ka~~nGidvfRi----FDAlND----------~RNl~~ai~a~kk~G~h~q~~i~ 146 (472)
T COG5016 93 RHYADDVVEKFVEKAAENGIDVFRI----FDALND----------VRNLKTAIKAAKKHGAHVQGTIS 146 (472)
T ss_pred cCCchHHHHHHHHHHHhcCCcEEEe----chhccc----------hhHHHHHHHHHHhcCceeEEEEE
Confidence 6788788888899999999999998 222221 24488999999999998877665
No 286
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=30.15 E-value=6.7e+02 Score=26.80 Aligned_cols=58 Identities=12% Similarity=0.052 Sum_probs=37.9
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCC--CcChHHHHHHHHHHHHHcCCEEEE
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPF--IGGSLEALDNALSWAEAYNIKCII 284 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~--~~~~l~~Ld~~v~~a~k~Gi~VIL 284 (532)
-++++.++.+++.|+ .|.|++.=..... +..... -.+.++.+-+.++.++++|+.+-+
T Consensus 112 ll~~e~~~~l~~~~~-~v~ISlDG~~~~h-D~~R~~~~g~gsf~~v~~~i~~l~~~gi~~~i 171 (412)
T PRK13745 112 LLTDEWCEFFRENNF-LVGVSIDGPQEFH-DEYRKNKMGKPSFVKVMKGINLLKKHGVEWNA 171 (412)
T ss_pred eCCHHHHHHHHHcCe-EEEEEecCCHHHh-hhhcCCCCCCccHHHHHHHHHHHHHcCCCEEE
Confidence 467899999999998 7888774211000 000011 124788888888999999987544
No 287
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=30.03 E-value=55 Score=32.88 Aligned_cols=58 Identities=9% Similarity=-0.012 Sum_probs=39.5
Q ss_pred CHHHHHHHHHcC----CCEEEEcccccccc-CCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEE
Q 009560 227 TIEDFNFLYRHG----INTVRIPVGWWIAF-DPDPPAPFIGGSLEALDNALSWAEAYNIKCIID 285 (532)
Q Consensus 227 te~d~~~la~~G----~N~VRIpv~ww~~~-~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILD 285 (532)
.+++++...+.| ++.||+.++-.... ...-. .=.++.++.+.++++.|++.|+.|.+.
T Consensus 71 ~~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~-~~~~~~~~~~~~~i~~a~~~G~~v~~~ 133 (268)
T cd07940 71 VKKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLK-KTREEVLERAVEAVEYAKSHGLDVEFS 133 (268)
T ss_pred CHhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCeEEEe
Confidence 489999999999 99999966432110 00000 002346788889999999999998864
No 288
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=29.95 E-value=3.8e+02 Score=30.21 Aligned_cols=145 Identities=13% Similarity=0.205 Sum_probs=72.0
Q ss_pred HHHHHHHHHcCCCEEEEcccc-ccccCCCCCCC------CC-----cChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGW-WIAFDPDPPAP------FI-----GGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNG 295 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~w-w~~~~~~~~~~------~~-----~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~ 295 (532)
++.++.|++.-||.|-+ ..| |.+-.|-+... |. .-+.+.+++.|+.|+++||+++.-.-.. |.-++
T Consensus 121 ~~~i~~L~~yHIN~~QF-YDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiy-aa~~~ 198 (559)
T PF13199_consen 121 EAEIDQLNRYHINGLQF-YDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIY-AANNN 198 (559)
T ss_dssp HHHHHHHHHTT--EEEE-TS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESS-EEETT
T ss_pred HHHHHHHHhhCcCeEEE-EeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhh-ccccC
Confidence 89999999999999976 333 23333322221 21 1268999999999999999999842221 11111
Q ss_pred CCCCCCC---------CC--------CCCCC------Ch---hhHHHHHHHHHHHHHHhCCCCcEEEEEe----ccCCCC
Q 009560 296 MEHSASR---------DG--------TTDWP------AS---DYISQTLDVIDFLASRYAKHPALLGIEL----LNEPSA 345 (532)
Q Consensus 296 ~~~sg~~---------~g--------~~~W~------~~---~~~~~~~~~w~~la~ry~~~p~v~g~EL----~NEP~~ 345 (532)
....|.. .+ ...|. +| .-++..++-.....+.+. ...+. +|- .+.-..
T Consensus 199 ~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~g-FDG~h-lDq~G~~~~~~d~ 276 (559)
T PF13199_consen 199 YEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFG-FDGWH-LDQLGNRGTVYDY 276 (559)
T ss_dssp --S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT---EEE-EE-S--EEEEGGT
T ss_pred cccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccC-CceEe-eeccCCCCccccC
Confidence 1100000 00 01122 23 333333333334444332 22222 111 111111
Q ss_pred CCCCcc-cHHHHHHHHHHHHHhhCCCcEEEEeC
Q 009560 346 ATVPLD-ILVPYYKQGYQIVRKYSPTAYVIVCQ 377 (532)
Q Consensus 346 ~~~~~~-~l~~~~~~~~~aIR~~~~~~~Viv~~ 377 (532)
. ...- .+..-|...++++++..|+..+++.+
T Consensus 277 ~-G~~i~~l~~~y~~Fi~~~K~~~~~k~lv~N~ 308 (559)
T PF13199_consen 277 D-GNKIYDLSDGYASFINAMKEALPDKYLVFNA 308 (559)
T ss_dssp T----GGECHHHHHHHHHHHHHHSTTSEEEEB-
T ss_pred C-CCCchhhHHHHHHHHHHHHHhCCCCceeeec
Confidence 1 1223 67899999999999999999988864
No 289
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=29.78 E-value=4.1e+02 Score=27.54 Aligned_cols=87 Identities=23% Similarity=0.326 Sum_probs=60.1
Q ss_pred CHHHHHHHHHcCCC-EEEEccccccccCCCCCCCCCcChHHHHHH--------HHHHHHHcCCE-EEEEcCCCCCCCCCC
Q 009560 227 TIEDFNFLYRHGIN-TVRIPVGWWIAFDPDPPAPFIGGSLEALDN--------ALSWAEAYNIK-CIIDLHAAPGSQNGM 296 (532)
Q Consensus 227 te~d~~~la~~G~N-~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~--------~v~~a~k~Gi~-VILDlH~~pGsqn~~ 296 (532)
.++.|..+|+.|+. .|=|++ ++.. |=.++.++.+.+ +++.|.++||. +++|.-..|=
T Consensus 135 ~~eel~llk~yg~aavIvLa~------d~~~--pt~e~Rl~i~~~~~~~~~~gll~~a~~~GI~diliDplVlpv----- 201 (308)
T PRK00979 135 EEEEIEALKESDIKAAIVLAF------DPMD--PSVEGRLKMLEEGGKGQDKGMLPLAEEAGIERPLVDTAVTPL----- 201 (308)
T ss_pred CHHHHHHHHHhCCceEEEEEc------CCCC--CCHHHHHHHHHhccccchHHHHHHHHHcCCCcEEeccCCCcC-----
Confidence 34669999999988 665655 2222 224567889999 89999999994 5555444321
Q ss_pred CCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Q 009560 297 EHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPS 344 (532)
Q Consensus 297 ~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~ 344 (532)
+ ....+.+.++.+.++| +.|...| +-|=+.
T Consensus 202 --s-------------~~~~tl~aI~~iK~~~-G~pt~~G--lSNiS~ 231 (308)
T PRK00979 202 --P-------------GSGAAIRAIFAVKAKF-GYPVGCA--PHNAPS 231 (308)
T ss_pred --c-------------cHHHHHHHHHHHHHHc-CCCeEEE--EeCCch
Confidence 1 1346788888999999 6787777 666653
No 290
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=29.53 E-value=91 Score=34.22 Aligned_cols=72 Identities=11% Similarity=0.175 Sum_probs=40.3
Q ss_pred HHHHHhcCC--CcEEEeccCcccCCC---C--CCHHH----HHHHHHHHHHHHHh--CCCcEEEEcccCCCCCCchHhhH
Q 009560 431 LQALNNANG--PLVFIGEWVNEWNVT---S--GTQKD----YQDFGSAQLEVYNA--ASFGWAYWTLKNDRKHWDFEWNI 497 (532)
Q Consensus 431 ~~~~~~~~g--~pv~vGEwG~~~~~~---~--a~~~~----~~~~~~~ql~~~~~--~~~Gw~yW~~k~e~~~Ws~~~~~ 497 (532)
+..+.+..+ +||+|+|-|...... + ...+. ++.+++++..+.++ .-.|.++|++-. +-.|..-...
T Consensus 358 l~~~~~~Y~~~~pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~D-nfEW~~Gy~~ 436 (469)
T PRK13511 358 LMRIKKDYPNYKKIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYFIWSLMD-VFSWSNGYEK 436 (469)
T ss_pred HHHHHHHcCCCCCEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccccc-ccchhcCccC
Confidence 334444443 589999999863211 1 11112 34555555555543 336999999987 3345433445
Q ss_pred hCCccc
Q 009560 498 RNNYLQ 503 (532)
Q Consensus 498 ~~g~~~ 503 (532)
+-|++-
T Consensus 437 RfGl~~ 442 (469)
T PRK13511 437 RYGLFY 442 (469)
T ss_pred ccceEE
Confidence 556654
No 291
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=28.97 E-value=82 Score=32.38 Aligned_cols=57 Identities=18% Similarity=0.122 Sum_probs=37.2
Q ss_pred HHHHHHHHHcCCCEEEEcccccc--ccCCCCCCCCC-----cChHHHHHHHHHHHHHcCCEEEEE
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWI--AFDPDPPAPFI-----GGSLEALDNALSWAEAYNIKCIID 285 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~--~~~~~~~~~~~-----~~~l~~Ld~~v~~a~k~Gi~VILD 285 (532)
++.|+.||+.|+|++=|-+-=.. ..-+. ..++. ..-+..+..+|+.|++.|||+|--
T Consensus 80 de~fk~ikdn~~Na~ViD~Kdd~G~lty~s-~d~~~~~~~sv~~f~Di~~~iKkaKe~giY~IAR 143 (400)
T COG1306 80 DELFKLIKDNNINAFVIDVKDDYGELTYPS-SDEINKYTKSVNKFKDIEPVIKKAKENGIYAIAR 143 (400)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCccEeccc-cchhhhhhhccccccccHHHHHHHHhcCeEEEEE
Confidence 68899999999999988662100 00000 01111 123556788999999999999864
No 292
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=28.94 E-value=1.8e+02 Score=28.94 Aligned_cols=134 Identities=13% Similarity=0.046 Sum_probs=75.1
Q ss_pred CCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCC
Q 009560 226 ITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGT 305 (532)
Q Consensus 226 ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~ 305 (532)
.-|=....|++.|++.|=|.=+-.. .+-.+.-+.+.+-++.|.++||.+||..--..
T Consensus 72 TGevS~~mL~d~G~~~viiGHSERR--------~~f~Etd~~i~~Kv~~al~~gl~pIvCvGE~~--------------- 128 (244)
T PF00121_consen 72 TGEVSAEMLKDLGCKYVIIGHSERR--------QYFGETDEIINKKVKAALENGLTPIVCVGETL--------------- 128 (244)
T ss_dssp TTHHBHHHHHHTTESEEEESCHHHH--------HHST-BHHHHHHHHHHHHHTT-EEEEEESSBH---------------
T ss_pred HHHhHHHHHHHhhCCEEEecccccc--------CccccccHHHHHHHHHHHHCCCEEEEEeccch---------------
Confidence 3467778899999999976432110 11223456788889999999999999875310
Q ss_pred CCCCChhhHHHH-HHHHHHHHHHhCCC------CcEEEEEeccCCCCC-CCCcccHHHHHHHHHHHHHhh---------C
Q 009560 306 TDWPASDYISQT-LDVIDFLASRYAKH------PALLGIELLNEPSAA-TVPLDILVPYYKQGYQIVRKY---------S 368 (532)
Q Consensus 306 ~~W~~~~~~~~~-~~~w~~la~ry~~~------p~v~g~EL~NEP~~~-~~~~~~l~~~~~~~~~aIR~~---------~ 368 (532)
.+....++ .-+.+||..-.++. +-+++|| |.+. +.....-.+..+++++.||+. .
T Consensus 129 ----~~~~~~~~~~~l~~Ql~~~l~~i~~~~~~~~iIAYE----PvWAIGtG~~as~~~~~~~~~~Ir~~l~~~~~~~~~ 200 (244)
T PF00121_consen 129 ----EERESGKTKEVLKRQLKSILKGIDKEELKNIIIAYE----PVWAIGTGKTASPEQIQEVHAFIREILAELYGEEVA 200 (244)
T ss_dssp ----HHHHTTCHHHHHHHHHHHHHTTSSGGGGTCEEEEEE----EGGGTSSSS-CCHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred ----hhhhcCcHHHHHHHHHHHHHhccccccccceEEEEc----ccccccCCCCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 00111112 23345555544432 4566665 5441 111122345667777777775 4
Q ss_pred CCcEEEEeCCCCCCCchhhhhc
Q 009560 369 PTAYVIVCQRIGNADPLELYQA 390 (532)
Q Consensus 369 ~~~~Viv~~~~~~~~~~~~~~~ 390 (532)
.+..|+.++.....+..+++..
T Consensus 201 ~~~~ILYGGSV~~~N~~~l~~~ 222 (244)
T PF00121_consen 201 NNIRILYGGSVNPENAAELLSQ 222 (244)
T ss_dssp HHSEEEEESSESTTTHHHHHTS
T ss_pred CceeEEECCcCCcccHHHHhcC
Confidence 5677888865533344455443
No 293
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=28.69 E-value=4.1e+02 Score=27.62 Aligned_cols=132 Identities=11% Similarity=-0.039 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCc--ChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCC
Q 009560 226 ITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIG--GSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRD 303 (532)
Q Consensus 226 ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~--~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~ 303 (532)
.+++.++.||++|++.+ +..-....++.-...+.+ ...+..-+.++.|++.||++--.+--
T Consensus 139 ~~~e~l~~LkeAGl~~i--~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~--------------- 201 (343)
T TIGR03551 139 SVEEALKRLKEAGLDSM--PGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMY--------------- 201 (343)
T ss_pred CHHHHHHHHHHhCcccc--cCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEE---------------
Confidence 46899999999999976 321111222111011111 14555568999999999976443221
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEecc-CCCCCCCC------cccHHHHHHHHHHHHHhhCCCcEEEEe
Q 009560 304 GTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLN-EPSAATVP------LDILVPYYKQGYQIVRKYSPTAYVIVC 376 (532)
Q Consensus 304 g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~N-EP~~~~~~------~~~l~~~~~~~~~aIR~~~~~~~Viv~ 376 (532)
|.. .+.+.+.....+++.+..++.....++ .+| -|.+.... ...-..-+-+++...|=.-|+..+-+.
T Consensus 202 G~~--Et~ed~~~~l~~lr~l~~~~~~~~~~i---P~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~ 276 (343)
T TIGR03551 202 GHV--ETPEHWVDHLLILREIQEETGGFTEFV---PLPFVHYNAPLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQ 276 (343)
T ss_pred ecC--CCHHHHHHHHHHHHHhhHHhCCeeEEE---eccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCCCcccCee
Confidence 111 024566667777777777776544333 333 11111110 111133455788888998898765566
Q ss_pred CCC
Q 009560 377 QRI 379 (532)
Q Consensus 377 ~~~ 379 (532)
.+|
T Consensus 277 a~~ 279 (343)
T TIGR03551 277 ASW 279 (343)
T ss_pred ccc
Confidence 555
No 294
>PLN02849 beta-glucosidase
Probab=28.01 E-value=85 Score=34.81 Aligned_cols=72 Identities=13% Similarity=0.147 Sum_probs=39.7
Q ss_pred HHHHHhcC-CCcEEEeccCcccCCC--C-CC----HHHHHHHHHHHHHHHHh--CCCcEEEEcccCCCCCCchHhhHhCC
Q 009560 431 LQALNNAN-GPLVFIGEWVNEWNVT--S-GT----QKDYQDFGSAQLEVYNA--ASFGWAYWTLKNDRKHWDFEWNIRNN 500 (532)
Q Consensus 431 ~~~~~~~~-g~pv~vGEwG~~~~~~--~-a~----~~~~~~~~~~ql~~~~~--~~~Gw~yW~~k~e~~~Ws~~~~~~~g 500 (532)
+..+.+.. .|||+|.|-|...... + .. .+-++.+++++..+.++ .-.|.++|++-. +-.|..-...+-|
T Consensus 376 L~~~~~rY~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~D-nfEW~~Gy~~RfG 454 (503)
T PLN02849 376 LEYIKQSYGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMD-LYELLKGYEFSFG 454 (503)
T ss_pred HHHHHHhcCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchh-hhchhccccCccc
Confidence 33344444 4589999999864211 1 01 11234555666666543 346999999987 3334333334556
Q ss_pred ccc
Q 009560 501 YLQ 503 (532)
Q Consensus 501 ~~~ 503 (532)
++-
T Consensus 455 Li~ 457 (503)
T PLN02849 455 LYS 457 (503)
T ss_pred eEE
Confidence 654
No 295
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=27.92 E-value=2.1e+02 Score=28.90 Aligned_cols=57 Identities=21% Similarity=0.332 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCC-CCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPD-PPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAA 289 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~-~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~ 289 (532)
.+--+.+|++|+..+|... ++|. .+..|.+-..+.+..+-+.|++.||.++-+.|..
T Consensus 44 ~~~A~~lk~~g~~~~r~~~-----~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~ 101 (266)
T PRK13398 44 VKVAEKLKELGVHMLRGGA-----FKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDT 101 (266)
T ss_pred HHHHHHHHHcCCCEEEEee-----ecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCCh
Confidence 4566788999999999854 2332 2234443356677777788999999999999964
No 296
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=27.62 E-value=5.8e+02 Score=25.98 Aligned_cols=57 Identities=16% Similarity=0.099 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
.+--+.+|+.|.+.+|-.. +.+...|..|.+-..+.|+.+-+.+.++|+.|+-..-.
T Consensus 62 ~~~A~~vk~~Ga~~lRGga----fKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtEvm~ 118 (286)
T COG2876 62 RETAESVKAAGAKALRGGA----FKPRTSPYSFQGLGEEGLKLLKRAADETGLPVVTEVMD 118 (286)
T ss_pred HHHHHHHHHcchhhccCCc----CCCCCCcccccccCHHHHHHHHHHHHHcCCeeEEEecC
Confidence 3455667899999999743 22333333444446677777778899999999987653
No 297
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=27.21 E-value=5.8e+02 Score=24.96 Aligned_cols=96 Identities=13% Similarity=0.027 Sum_probs=56.8
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCC-cChHHHHHHHHHHHHHcCC-EEEEEcCCCCCCCCCCCCCCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFI-GGSLEALDNALSWAEAYNI-KCIIDLHAAPGSQNGMEHSASRDGT 305 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~-~~~l~~Ld~~v~~a~k~Gi-~VILDlH~~pGsqn~~~~sg~~~g~ 305 (532)
+++++.+++.|..++. .++-|.....- ...-. +..-+..+.+++.+.+||+ .|-||+=. |+... .+.
T Consensus 54 ~~~i~~l~~kG~KVl~-sigg~~~~~~~-~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~-~~~~~--------~~~ 122 (255)
T cd06542 54 ETYIRPLQAKGTKVLL-SILGNHLGAGF-ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEY-SGYGK--------NGT 122 (255)
T ss_pred HHHHHHHhhCCCEEEE-EECCCCCCCCc-cccCCHHHHHHHHHHHHHHHHHhCCCceEEeeee-cccCC--------CCC
Confidence 7888889999997664 34333221110 00112 2245667788999999998 47777643 21110 000
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEE
Q 009560 306 TDWPASDYISQTLDVIDFLASRYAKHPALLGIE 338 (532)
Q Consensus 306 ~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~E 338 (532)
.+...+.+..+++.|.+++.....++.+.
T Consensus 123 ----~~~~~~~~~~lv~~Lr~~~~~~~kllt~~ 151 (255)
T cd06542 123 ----SQPSNEAFVRLIKELRKYMGPTDKLLTID 151 (255)
T ss_pred ----CcchHHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 13467788999999999986434455433
No 298
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=27.10 E-value=1.7e+02 Score=29.20 Aligned_cols=49 Identities=22% Similarity=0.167 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
++-++.++++||++|=|+-+.- .+ ..+...++|+.++++|++|+-.+..
T Consensus 74 ~~Yl~~~k~lGf~~IEiS~G~~---------~i---~~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 74 DEYLNECDELGFEAVEISDGSM---------EI---SLEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred HHHHHHHHHcCCCEEEEcCCcc---------CC---CHHHHHHHHHHHHhCCCeEeccccc
Confidence 6778899999999999865431 11 2356778999999999999987653
No 299
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=26.86 E-value=1.5e+02 Score=28.69 Aligned_cols=63 Identities=27% Similarity=0.423 Sum_probs=37.2
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHH-HhCCCCcEEEEEecc-CCCCCC--CCcccHHHH
Q 009560 281 KCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLAS-RYAKHPALLGIELLN-EPSAAT--VPLDILVPY 356 (532)
Q Consensus 281 ~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~-ry~~~p~v~g~EL~N-EP~~~~--~~~~~l~~~ 356 (532)
-.|||.-.+||| |.|+|. |-..+..++|+||++ ||-.+. +...++++
T Consensus 71 ~~VlD~G~APGs----------------------------WsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtd- 121 (232)
T KOG4589|consen 71 DTVLDCGAAPGS----------------------------WSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTD- 121 (232)
T ss_pred CEEEEccCCCCh----------------------------HHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCC-
Confidence 378999988873 344543 344566899999998 454321 11111111
Q ss_pred HHHHHHHHHhhCCCcEE
Q 009560 357 YKQGYQIVRKYSPTAYV 373 (532)
Q Consensus 357 ~~~~~~aIR~~~~~~~V 373 (532)
..++..||+..|++.|
T Consensus 122 -p~~~~ki~e~lp~r~V 137 (232)
T KOG4589|consen 122 -PETYRKIFEALPNRPV 137 (232)
T ss_pred -HHHHHHHHHhCCCCcc
Confidence 2456677888787553
No 300
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=26.80 E-value=4.8e+02 Score=29.43 Aligned_cols=106 Identities=17% Similarity=0.226 Sum_probs=67.7
Q ss_pred HHHHhhccccCCHHHHHHHHHcCCCEEEE---------cc------ccccccCCCCCCCCCcChHHHHHHHHHHHHHcCC
Q 009560 216 EVLKRHRNTFITIEDFNFLYRHGINTVRI---------PV------GWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNI 280 (532)
Q Consensus 216 ~~~~~hw~t~ite~d~~~la~~G~N~VRI---------pv------~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi 280 (532)
..+..-|++|+.++..+.+.+-|+=.+-+ -. .||....... | ...|+.+...++.|++.|.
T Consensus 284 ~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~td--p--~~~lqWf~~~L~~ae~~Ge 359 (577)
T KOG3770|consen 284 KHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTD--P--IDQLQWFVDQLQEAESAGE 359 (577)
T ss_pred HHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCC--c--hHHhhHHHHHHHHHHhcCC
Confidence 56778899999999999888776543322 11 1222222221 2 1259999999999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEE
Q 009560 281 KCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALL 335 (532)
Q Consensus 281 ~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~ 335 (532)
+|-|=.|-.||...- ...|. ........++-+.++.+|-+++++=
T Consensus 360 kVhil~HIPpG~~~c---------~~~ws-~~f~~iv~r~~~tI~gqf~GH~h~d 404 (577)
T KOG3770|consen 360 KVHILGHIPPGDGVC---------LEGWS-INFYRIVNRFRSTIAGQFYGHTHID 404 (577)
T ss_pred EEEEEEeeCCCCcch---------hhhhh-HHHHHHHHHHHHhhhhhccccCcce
Confidence 999999998874111 11232 2333444566667777776666543
No 301
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.75 E-value=6.5e+02 Score=25.11 Aligned_cols=127 Identities=15% Similarity=0.186 Sum_probs=66.7
Q ss_pred CCHHHHHHH----HHcCCCEEEEccc--cccccCCCCC-CCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCC
Q 009560 226 ITIEDFNFL----YRHGINTVRIPVG--WWIAFDPDPP-APFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEH 298 (532)
Q Consensus 226 ite~d~~~l----a~~G~N~VRIpv~--ww~~~~~~~~-~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~ 298 (532)
+++++.+.+ ++.|+...+++++ |. .+...+ +...+.+++++.+.++.|.+.|.. .|.+| ||+...
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~--iNlas~~~~~r~~sv~~~~~~i~~A~~lga~-~vv~H--~G~~~~--- 114 (274)
T TIGR00587 43 LEEEVIDWFKAALETNKNLSQIVLVHAPYL--INLASPDEEKEEKSLDVLDEELKRCELLGIM-LYNFH--PGSALK--- 114 (274)
T ss_pred CCHHHHHHHHHHHHHcCCCCcceeccCCee--eecCCCCHHHHHHHHHHHHHHHHHHHHcCCC-EEEEC--CCCCCC---
Confidence 345555554 3567765555553 21 222222 122345899999999999999998 55566 343210
Q ss_pred CCCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhhC--CCcEEEEe
Q 009560 299 SASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYS--PTAYVIVC 376 (532)
Q Consensus 299 sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~--~~~~Viv~ 376 (532)
. ..++..++..+.++.+.++ .. ...+++|-+-.... .+-.-.+++...++..+ +...+++.
T Consensus 115 ------~---~~e~~~~~~~~~l~~l~~~-~~-~v~l~lEN~~~~~~------~l~~~~~el~~ll~~~~~~~~lg~~lD 177 (274)
T TIGR00587 115 ------C---SEEEGLDNLIESLNVVIKE-TK-IVTILLENMAGQGS------ELGRSFEELAYIIKVIVDKRRIGVCLD 177 (274)
T ss_pred ------C---CHHHHHHHHHHHHHHHHhc-cC-CCEEEEEeCCCCCC------ccCCCHHHHHHHHHhcCCCCceEEEEE
Confidence 0 1145667777777777652 22 23355554432211 11112244555566655 34445554
Q ss_pred C
Q 009560 377 Q 377 (532)
Q Consensus 377 ~ 377 (532)
.
T Consensus 178 t 178 (274)
T TIGR00587 178 T 178 (274)
T ss_pred h
Confidence 3
No 302
>PLN02561 triosephosphate isomerase
Probab=26.67 E-value=6.6e+02 Score=25.19 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=36.6
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
|=-.+.|+++|++.|=|.=+ +.. .+-.+.=+.+.+-+..|.++||.+||..-.
T Consensus 78 evS~~mL~d~G~~~viiGHS-----ERR---~~f~Etd~~v~~Kv~~al~~gl~pIvCvGE 130 (253)
T PLN02561 78 EISAEMLVNLGIPWVILGHS-----ERR---ALLGESNEFVGDKVAYALSQGLKVIACVGE 130 (253)
T ss_pred cCCHHHHHHcCCCEEEECcc-----ccc---CccCCChHHHHHHHHHHHHCcCEEEEEcCC
Confidence 45567889999998866321 111 222334566778888999999999998753
No 303
>PF13785 DUF4178: Domain of unknown function (DUF4178)
Probab=26.58 E-value=3.5e+02 Score=23.78 Aligned_cols=42 Identities=29% Similarity=0.651 Sum_probs=29.8
Q ss_pred CCceeee---cccCccccccccCCc---ccccceEEEEEecCCeEEEEecC
Q 009560 41 GGWLVIE---GWIKPSLFDGILNGD---MLDGTQVQIKSVTLEKYVCAESG 85 (532)
Q Consensus 41 ~~~~~~~---~~~~~~~~~~~~~~~---~~~g~~v~~~s~~~~~yv~ae~g 85 (532)
..||..| +|..-.+...+|... +-.++++++.. .+|-..|.|
T Consensus 41 ~~WLsvE~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~y~~~e~~ 88 (140)
T PF13785_consen 41 FAWLSVEEDDGWLEVRLWEPVPPPEDDNLPPGDTVTYDG---KRYRLDESG 88 (140)
T ss_pred EEEEEEEcCCCEEEEEEeecCCcccccccCCCCEEEECC---eEEEEEEeE
Confidence 3588766 577777777776665 56778888863 468888876
No 304
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=26.47 E-value=2.2e+02 Score=29.14 Aligned_cols=56 Identities=18% Similarity=0.127 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEE
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCII 284 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VIL 284 (532)
++.++.+++.|.+.|++-+..- ...+........-..+.+.++++.|+++|+.|.+
T Consensus 123 ~~~v~~~~~~G~~~iK~~~~g~-~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~ 178 (342)
T cd01299 123 RAAVREQLRRGADQIKIMATGG-VLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAA 178 (342)
T ss_pred HHHHHHHHHhCCCEEEEeccCC-cCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEE
Confidence 5677888889999999966431 1111111010112467899999999999988665
No 305
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=26.44 E-value=4.4e+02 Score=27.40 Aligned_cols=102 Identities=9% Similarity=0.040 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHH-cCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Q 009560 266 EALDNALSWAEA-YNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPS 344 (532)
Q Consensus 266 ~~Ld~~v~~a~k-~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~ 344 (532)
+.+.++.+.-++ .+++|+|.+.... .+... -...-.+++.++++++-+..+.++|+=+.-.+-||-.....
T Consensus 56 ~~~~~~~~lk~~~p~lkvlisiGG~~-------~~~~~-f~~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~~ 127 (362)
T cd02872 56 GLYERFNALKEKNPNLKTLLAIGGWN-------FGSAK-FSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQRG 127 (362)
T ss_pred hHHHHHHHHHhhCCCceEEEEEcCCC-------CCcch-hHHHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccCC
Confidence 445555444333 4899999986421 11000 00011246777778777777777775222222344222111
Q ss_pred CCCCCcccHHHHHHHHHHHHHhhCCCcEEEE
Q 009560 345 AATVPLDILVPYYKQGYQIVRKYSPTAYVIV 375 (532)
Q Consensus 345 ~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv 375 (532)
....+.+.+..+++++.+++++.+++..|.+
T Consensus 128 ~~~~d~~~~~~ll~~lr~~l~~~~~~~~ls~ 158 (362)
T cd02872 128 GPPEDKENFVTLLKELREAFEPEAPRLLLTA 158 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhCcCeEEEE
Confidence 1112345677788888888877755544444
No 306
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=26.42 E-value=6.7e+02 Score=25.17 Aligned_cols=111 Identities=15% Similarity=0.102 Sum_probs=59.1
Q ss_pred HHHHHHHhhCCCcEEEEeCCCCCCCchhhhhccCCCCcE--EEEeeecccCCCccccCChhhhHHHHHHHHHHHHHHHHh
Q 009560 359 QGYQIVRKYSPTAYVIVCQRIGNADPLELYQANIGLHNI--VVDLHYYNLFDTFFVNMSTVDNILFIYKSREAQLQALNN 436 (532)
Q Consensus 359 ~~~~aIR~~~~~~~Viv~~~~~~~~~~~~~~~~~~~~nv--v~s~H~Y~~f~~~~~~~~~~~~i~~i~~~~~~~~~~~~~ 436 (532)
.+++..++.+-...++++.... +....+.+....+++ .+.+|+..- . ...+...+.+. .+..
T Consensus 21 ~vi~~a~~~gv~~~~~~g~~~~--~~~~~~~la~~y~~v~~~~G~HP~~~----~--~~~~~~~~~l~--------~~~~ 84 (256)
T COG0084 21 EVIARAREAGVKKMVVVGTDLE--DFKRALELAEKYPNVYAAVGVHPLDA----D--EHSEEDLEELE--------QLAE 84 (256)
T ss_pred HHHHHHHHcCCcEEEEeecCHH--HHHHHHHHHHhCCCeEEEEeeCCCcc----c--cccHHHHHHHH--------HHHh
Confidence 3566667777677777775432 112222222334454 466777651 1 01122222222 2222
Q ss_pred cCCCcEEEeccCcccCCCCC-CHHHHHHHHHHHHHHHHhCCCcEEEEccc
Q 009560 437 ANGPLVFIGEWVNEWNVTSG-TQKDYQDFGSAQLEVYNAASFGWAYWTLK 485 (532)
Q Consensus 437 ~~g~pv~vGEwG~~~~~~~a-~~~~~~~~~~~ql~~~~~~~~Gw~yW~~k 485 (532)
....-+-|||-|..+.-... ..+...+++++|+.+..+.+..-...+=+
T Consensus 85 ~~~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~ 134 (256)
T COG0084 85 HHPKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRD 134 (256)
T ss_pred cCCCeEEEEecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 22344789999997543333 45667778888888777766666555444
No 307
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=26.05 E-value=65 Score=31.85 Aligned_cols=51 Identities=25% Similarity=0.419 Sum_probs=34.8
Q ss_pred ccccCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEE
Q 009560 222 RNTFITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIID 285 (532)
Q Consensus 222 w~t~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILD 285 (532)
|+.-+.|.||..-++-|+.+|-| .|-.-+++++..++|+.|+..|+..+|.
T Consensus 213 WDEs~readF~~e~e~gv~avVI-------------KPTL~GSl~r~~eli~qAh~lGl~AVIS 263 (321)
T COG1441 213 WDESLREADFAFEAEPGVRAVVI-------------KPTLTGSLQRVRELVQQAHALGLTAVIS 263 (321)
T ss_pred ecchhcccccccccCCCceEEEe-------------cccchhhHHHHHHHHHHHHhcCceeEee
Confidence 44444555555555555555543 1223468999999999999999999985
No 308
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=25.96 E-value=1.1e+02 Score=31.81 Aligned_cols=65 Identities=17% Similarity=0.292 Sum_probs=48.5
Q ss_pred ccCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCc---ChHHHHHHHHHHHHHcCCEEEEEcCCCCC
Q 009560 224 TFITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIG---GSLEALDNALSWAEAYNIKCIIDLHAAPG 291 (532)
Q Consensus 224 t~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~---~~l~~Ld~~v~~a~k~Gi~VILDlH~~pG 291 (532)
+-.+++-++.|+++|++-+-++++ ..||.....+.+ -.++.+.++.+++...||-|+|..--.||
T Consensus 200 ~~L~~~lv~eLeeAGLdRiNlSv~---aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvlIaPv~lPG 267 (414)
T COG2100 200 VLLSKKLVDELEEAGLDRINLSVD---ALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVLIAPVWLPG 267 (414)
T ss_pred eeccHHHHHHHHHhCCceEEeecc---cCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCCEEEeeeecCC
Confidence 346789999999999999988884 345432111111 15788889999999999999998777765
No 309
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=25.93 E-value=8.3e+02 Score=26.73 Aligned_cols=99 Identities=16% Similarity=0.057 Sum_probs=57.8
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCC-CCCCCCCCCCCCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAA-PGSQNGMEHSASRDGTT 306 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~-pGsqn~~~~sg~~~g~~ 306 (532)
.+--+.+++.|+|.+-|.-- .. ......-...-.+..+.++.+..+.|||+|.|...-+ |- .-.|-. ..
T Consensus 186 kDYAR~laSiGINg~v~NNV--Nv-k~~e~~lit~~fl~k~aklAdiFR~YGIK~yLsinfaSP~-----~lGgL~--TA 255 (684)
T COG3661 186 KDYARALASIGINGTVLNNV--NV-KKAESYLITAPFLAKAAKLADIFRPYGIKVYLSINFASPM-----ELGGLK--TA 255 (684)
T ss_pred HHHHHHHhhcCcceEEeccc--cc-chhhhheechHhHHHHHHHHHHhhhccceEEEEeccCCcc-----ccCCcC--cC
Confidence 34456678999999876210 01 1111111233468888999999999999999997643 21 111111 11
Q ss_pred CCCChhhHHHHHHHHHHHHH-HhCCCCcEEEEEec
Q 009560 307 DWPASDYISQTLDVIDFLAS-RYAKHPALLGIELL 340 (532)
Q Consensus 307 ~W~~~~~~~~~~~~w~~la~-ry~~~p~v~g~EL~ 340 (532)
+..-++..+.|+.-+. -|+--|..-||=+-
T Consensus 256 ----DPLDe~VrawWkeka~~IY~yIPDFGGFLVK 286 (684)
T COG3661 256 ----DPLDEAVRAWWKEKADEIYKYIPDFGGFLVK 286 (684)
T ss_pred ----CcccHHHHHHHHHHHHHHHHhcccccceEEe
Confidence 2234567788877654 46666666555443
No 310
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=25.56 E-value=3.2e+02 Score=23.62 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=32.9
Q ss_pred CCCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCchh
Q 009560 330 KHPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQRIGNADPLE 386 (532)
Q Consensus 330 ~~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~~~~~~~~~~ 386 (532)
..|.++++.++.. ... ...++.+.||+..|+.+|++++...+..+..
T Consensus 38 ~~pdiv~~S~~~~---------~~~-~~~~~~~~ik~~~p~~~iv~GG~~~t~~p~~ 84 (127)
T cd02068 38 LKPDVVGISLMTS---------AIY-EALELAKIAKEVLPNVIVVVGGPHATFFPEE 84 (127)
T ss_pred cCCCEEEEeeccc---------cHH-HHHHHHHHHHHHCCCCEEEECCcchhhCHHH
Confidence 5688999876422 122 4678888999999999999987654444443
No 311
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=25.52 E-value=6.5e+02 Score=24.71 Aligned_cols=86 Identities=20% Similarity=0.214 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccC-CC
Q 009560 266 EALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNE-PS 344 (532)
Q Consensus 266 ~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NE-P~ 344 (532)
..+...++.|+++|++|++.+.... .+. ....-.+++.++++++-+..+.++|.= -|++|-=| |.
T Consensus 46 ~~~~~~~~~~~~~~~kvl~sigg~~-------~~~---~~~~~~~~~~r~~fi~~lv~~~~~~~~----DGIdiDwE~~~ 111 (253)
T cd06545 46 SELNSVVNAAHAHNVKILISLAGGS-------PPE---FTAALNDPAKRKALVDKIINYVVSYNL----DGIDVDLEGPD 111 (253)
T ss_pred HHHHHHHHHHHhCCCEEEEEEcCCC-------CCc---chhhhcCHHHHHHHHHHHHHHHHHhCC----CceeEEeeccC
Confidence 5677889999999999999886421 100 001123567788777666666666642 23333333 32
Q ss_pred CCCCCcccHHHHHHHHHHHHHhhC
Q 009560 345 AATVPLDILVPYYKQGYQIVRKYS 368 (532)
Q Consensus 345 ~~~~~~~~l~~~~~~~~~aIR~~~ 368 (532)
. ..+.+..+.+++.+++++.+
T Consensus 112 ~---~~~~~~~fv~~Lr~~l~~~~ 132 (253)
T cd06545 112 V---TFGDYLVFIRALYAALKKEG 132 (253)
T ss_pred c---cHhHHHHHHHHHHHHHhhcC
Confidence 1 13456666666666666543
No 312
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=25.43 E-value=2.3e+02 Score=23.82 Aligned_cols=47 Identities=23% Similarity=0.324 Sum_probs=35.5
Q ss_pred cCCHHHHHHHHHcC-CCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEE
Q 009560 225 FITIEDFNFLYRHG-INTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCII 284 (532)
Q Consensus 225 ~ite~d~~~la~~G-~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VIL 284 (532)
..+..|++.+-+.| ++.|++-+.+ -+.+....++.+.|+++|+.+.+
T Consensus 4 ~~~~~~~~~li~~~a~d~~~~~~~~-------------~GGit~~~~i~~~A~~~gi~~~~ 51 (111)
T PF13378_consen 4 LFSLHDFRRLIEAGAVDIVQIDPTR-------------CGGITEALRIAALAEAHGIPVMP 51 (111)
T ss_dssp SSSHHHHHHHHHTTSCSEEEEBHHH-------------HTSHHHHHHHHHHHHHTT-EEEE
T ss_pred CCCHHHHHHHHHcCCCCEEEeCchh-------------cCCHHHHHHHHHHHHHhCCCEEe
Confidence 34678888887765 7888886643 23678899999999999999776
No 313
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=25.19 E-value=1.2e+02 Score=33.40 Aligned_cols=74 Identities=11% Similarity=0.095 Sum_probs=40.8
Q ss_pred HHHHHHhcCCCcEEEeccCcccCCC---CC--CHHH----HHHHHHHHHHHHHh--CCCcEEEEcccCCCCCCchH-hhH
Q 009560 430 QLQALNNANGPLVFIGEWVNEWNVT---SG--TQKD----YQDFGSAQLEVYNA--ASFGWAYWTLKNDRKHWDFE-WNI 497 (532)
Q Consensus 430 ~~~~~~~~~g~pv~vGEwG~~~~~~---~a--~~~~----~~~~~~~ql~~~~~--~~~Gw~yW~~k~e~~~Ws~~-~~~ 497 (532)
.+..+.++.+.||+|.|-|...... .. ..+. ++.+++++..+.+. .-.|.++|++-. .-.|..- -..
T Consensus 356 ~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~D-n~Ew~~G~y~~ 434 (474)
T PRK09852 356 TMNMMYDRYQKPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCID-LVSASTGEMSK 434 (474)
T ss_pred HHHHHHHhcCCCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccc-cccccCCCccc
Confidence 3444555666789999999863211 10 1112 24445555555542 346999999987 3334322 234
Q ss_pred hCCcccC
Q 009560 498 RNNYLQL 504 (532)
Q Consensus 498 ~~g~~~~ 504 (532)
+-|++--
T Consensus 435 RfGLv~V 441 (474)
T PRK09852 435 RYGFVYV 441 (474)
T ss_pred eeeeEEE
Confidence 5666643
No 314
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=25.14 E-value=1.2e+02 Score=30.28 Aligned_cols=50 Identities=14% Similarity=0.063 Sum_probs=36.2
Q ss_pred CHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 227 TIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 227 te~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
-++-++.++++||++|=|+-+.- .. ..+...++|+.+++.|++|+--+..
T Consensus 86 ~~~yl~~~k~lGf~~IEiSdGti---------~l---~~~~r~~~I~~~~~~Gf~v~~EvG~ 135 (244)
T PF02679_consen 86 FDEYLEECKELGFDAIEISDGTI---------DL---PEEERLRLIRKAKEEGFKVLSEVGK 135 (244)
T ss_dssp HHHHHHHHHHCT-SEEEE--SSS---------------HHHHHHHHHHHCCTTSEEEEEES-
T ss_pred HHHHHHHHHHcCCCEEEecCCce---------eC---CHHHHHHHHHHHHHCCCEEeecccC
Confidence 48899999999999999865431 11 2356778899999999999998873
No 315
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=24.76 E-value=7e+02 Score=24.81 Aligned_cols=46 Identities=13% Similarity=-0.001 Sum_probs=31.2
Q ss_pred cEEEeccCcccCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEcccC
Q 009560 441 LVFIGEWVNEWNVTSGTQKDYQDFGSAQLEVYNAASFGWAYWTLKN 486 (532)
Q Consensus 441 pv~vGEwG~~~~~~~a~~~~~~~~~~~ql~~~~~~~~Gw~yW~~k~ 486 (532)
.+-|||-|..+.....+.+...++++.|++...+.+..-...+-+.
T Consensus 92 ~~aIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r~a 137 (258)
T PRK11449 92 VVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRT 137 (258)
T ss_pred EEEEEecccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEecCc
Confidence 4679999987542233456677888888888777666666665543
No 316
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=24.70 E-value=1e+02 Score=33.77 Aligned_cols=72 Identities=13% Similarity=0.201 Sum_probs=39.8
Q ss_pred HHHHHhcCC--CcEEEeccCcccCCC--CCC--HHH----HHHHHHHHHHHHHh--CCCcEEEEcccCCCCCCchHhhHh
Q 009560 431 LQALNNANG--PLVFIGEWVNEWNVT--SGT--QKD----YQDFGSAQLEVYNA--ASFGWAYWTLKNDRKHWDFEWNIR 498 (532)
Q Consensus 431 ~~~~~~~~g--~pv~vGEwG~~~~~~--~a~--~~~----~~~~~~~ql~~~~~--~~~Gw~yW~~k~e~~~Ws~~~~~~ 498 (532)
+..+.+..+ |||+|.|-|...... ... .+. ++.+++++..+.+. .-.|.++|++-. +-.|..-...+
T Consensus 357 L~~~~~~Y~~~ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~WSl~D-n~Ew~~Gy~~R 435 (467)
T TIGR01233 357 IMRVKNDYPNYKKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIWSLMD-VFSWSNGYEKR 435 (467)
T ss_pred HHHHHHHcCCCCCEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchh-hhchhccccCc
Confidence 344445544 579999999864211 111 112 34455555555542 346999999987 33444333455
Q ss_pred CCccc
Q 009560 499 NNYLQ 503 (532)
Q Consensus 499 ~g~~~ 503 (532)
-|++-
T Consensus 436 fGLv~ 440 (467)
T TIGR01233 436 YGLFY 440 (467)
T ss_pred cceEE
Confidence 56654
No 317
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=24.63 E-value=1.5e+02 Score=30.97 Aligned_cols=27 Identities=26% Similarity=0.215 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHcCCEEEEEcCCCCCCC
Q 009560 267 ALDNALSWAEAYNIKCIIDLHAAPGSQ 293 (532)
Q Consensus 267 ~Ld~~v~~a~k~Gi~VILDlH~~pGsq 293 (532)
.++.+.+.|+++||.||-|--++.|+.
T Consensus 128 d~~~i~~~~~~~~i~lIeD~a~a~g~~ 154 (363)
T PF01041_consen 128 DMDAIRAIARKHGIPLIEDAAQAFGAR 154 (363)
T ss_dssp -HHHHHHHHHHTT-EEEEE-TTTTT-E
T ss_pred cHHHHHHHHHHcCCcEEEccccccCce
Confidence 589999999999999999998888763
No 318
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=24.43 E-value=3.5e+02 Score=27.06 Aligned_cols=75 Identities=21% Similarity=0.349 Sum_probs=37.0
Q ss_pred CceeeecccC-ccccccc-----------cCCcccccceEEE-EEecCCeEEEEecCC--CceeEEcCCCCCCcceEEEE
Q 009560 42 GWLVIEGWIK-PSLFDGI-----------LNGDMLDGTQVQI-KSVTLEKYVCAESGG--GTDVSVTRDVASSWETFTLW 106 (532)
Q Consensus 42 ~~~~~~~~~~-~~~~~~~-----------~~~~~~~g~~v~~-~s~~~~~yv~ae~gg--~~~l~anr~~~~~wE~f~~~ 106 (532)
.=||+|++|+ +.--..| .....+.|.+|.+ ..-.+..+...+... |.-. .-+.|+
T Consensus 26 ~~lVV~~~i~~~~~~~~V~Ls~s~~~~~~~~~~~v~~A~V~i~~~~~~~~~~~~~~~~~~g~Y~--------~~~~~~-- 95 (298)
T PF14054_consen 26 PKLVVEGYITNPGDPQTVRLSRSVPYFDNSPPEPVSGATVTIYEDGQGNEYLFEESSNNDGVYY--------SSNSFR-- 95 (298)
T ss_pred CeEEEEEEEecCCCcEEEEEEEeecccCCCCCcccCCcEEEEEeCCCcceEeecccCCCcceEE--------eccccc--
Confidence 4588899988 4332211 1122277888888 433333444444432 1111 011121
Q ss_pred EecCCeEEEEe-c-CCeEEEEe
Q 009560 107 RVSESEFQFRT-S-QGQFLTCD 126 (532)
Q Consensus 107 ~~~~~~~~lr~-~-~~~~v~~~ 126 (532)
-.-+.++.|++ . +|+.++++
T Consensus 96 ~~~G~~Y~L~V~~~~~~~~sa~ 117 (298)
T PF14054_consen 96 GRPGRTYRLEVETPGGKTYSAE 117 (298)
T ss_pred ccCCCEEEEEEEECCCCEEEEE
Confidence 12256677776 3 66666654
No 319
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=24.43 E-value=6.6e+02 Score=24.40 Aligned_cols=121 Identities=12% Similarity=0.066 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCC
Q 009560 264 SLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEP 343 (532)
Q Consensus 264 ~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP 343 (532)
..+.++++++.|++-|..+|.- +. |.. ++ . -..++..+.+++.++.+++.-++..-.+++|..|=+
T Consensus 82 ~~~~~~~~i~~a~~lg~~~i~~-~~--g~~-----~~----~--~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~ 147 (254)
T TIGR03234 82 FREGVALAIAYARALGCPQVNC-LA--GKR-----PA----G--VSPEEARATLVENLRYAADALDRIGLTLLIEPINSF 147 (254)
T ss_pred HHHHHHHHHHHHHHhCCCEEEE-Cc--CCC-----CC----C--CCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcc
Confidence 4688999999999999998763 32 211 00 0 011355677778888888766666666778866544
Q ss_pred CCCCCCcccHHHHHHHHHHHHHhhCCC-cEEEEeCCC---CCCCchhhhhccCCCCcEEEEeeecc
Q 009560 344 SAATVPLDILVPYYKQGYQIVRKYSPT-AYVIVCQRI---GNADPLELYQANIGLHNIVVDLHYYN 405 (532)
Q Consensus 344 ~~~~~~~~~l~~~~~~~~~aIR~~~~~-~~Viv~~~~---~~~~~~~~~~~~~~~~nvv~s~H~Y~ 405 (532)
..+. .+-.-.+++.+.|++++.. .-+.+..+. ...++.+.... ...-+..+|.-.
T Consensus 148 ~~~~----~~l~t~~~~~~li~~v~~~~~~i~~D~~h~~~~~e~~~~~i~~---~~~~i~~vHi~D 206 (254)
T TIGR03234 148 DMPG----FFLTTTEQALAVIDDVGRENLKLQYDLYHMQRMGGDLARTLAA---YAAHIGHVQIAD 206 (254)
T ss_pred cCCC----ChhcCHHHHHHHHHHhCCCCEeEeeehhhhhhhCCCHHHHHHH---hhccEeEEEeCC
Confidence 3211 1223346778888888744 445554321 11233333332 123455677653
No 320
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=24.31 E-value=2e+02 Score=27.21 Aligned_cols=44 Identities=14% Similarity=0.083 Sum_probs=34.7
Q ss_pred HHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 230 DFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 230 d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
+++.++++|.+.|=++... + -..+.++++.|+++|+.++++++.
T Consensus 68 ~~~~~~~~Gad~i~vh~~~-------~--------~~~~~~~i~~~~~~g~~~~~~~~~ 111 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVA-------D--------DATIKGAVKAAKKHGKEVQVDLIN 111 (206)
T ss_pred HHHHHHHcCCCEEEEeccC-------C--------HHHHHHHHHHHHHcCCEEEEEecC
Confidence 6888999999988766421 1 134678999999999999999875
No 321
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=24.21 E-value=2.4e+02 Score=28.29 Aligned_cols=47 Identities=15% Similarity=0.252 Sum_probs=36.6
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHA 288 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~ 288 (532)
+-.++..+++|.+.|=|-..- . .-+.+.++++.|++.|+.+++|+|.
T Consensus 123 ~~qi~~a~~~GAD~VlLi~~~---l-----------~~~~l~~li~~a~~lGl~~lvevh~ 169 (260)
T PRK00278 123 PYQIYEARAAGADAILLIVAA---L-----------DDEQLKELLDYAHSLGLDVLVEVHD 169 (260)
T ss_pred HHHHHHHHHcCCCEEEEEecc---C-----------CHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 567778888899988764421 0 1257999999999999999999996
No 322
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=24.19 E-value=1.2e+02 Score=33.22 Aligned_cols=66 Identities=21% Similarity=0.297 Sum_probs=45.7
Q ss_pred ccccCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCC
Q 009560 222 RNTFITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPG 291 (532)
Q Consensus 222 w~t~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pG 291 (532)
..-|+.|+.++.|.+.|.+.|=|.|- .+.+.---..-.+...+.+-++.+.++++|++|.. |-+||
T Consensus 192 RPD~~~ee~ld~mlkyG~TrVELGVQ--Siyd~Vl~~~~RGHtvedv~~a~rLlKd~GfKv~~--HiMpG 257 (515)
T COG1243 192 RPDYIDEEHLDQMLKYGVTRVELGVQ--SIYDDVLERTKRGHTVEDVVEATRLLKDAGFKVGY--HIMPG 257 (515)
T ss_pred CccccCHHHHHHHHhcCCcEEEEeee--eHHHHHHHHhcCCccHHHHHHHHHHHHhcCcEEEE--EecCC
Confidence 45688999999999999999999883 22211000000233677788888999999999765 54554
No 323
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=24.13 E-value=1.3e+02 Score=33.17 Aligned_cols=72 Identities=14% Similarity=0.073 Sum_probs=41.2
Q ss_pred HHHHHhcCCCcEEEeccCcccCCC---CC------CHHHHHHHHHHHHHHHH-h--CCCcEEEEcccCCCCCCchH-hhH
Q 009560 431 LQALNNANGPLVFIGEWVNEWNVT---SG------TQKDYQDFGSAQLEVYN-A--ASFGWAYWTLKNDRKHWDFE-WNI 497 (532)
Q Consensus 431 ~~~~~~~~g~pv~vGEwG~~~~~~---~a------~~~~~~~~~~~ql~~~~-~--~~~Gw~yW~~k~e~~~Ws~~-~~~ 497 (532)
+..+.+..+.||+|.|-|...... .. ..+.++.+++++..+.+ . .-.|.++|++-. +-.|..- -..
T Consensus 360 l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~D-n~EW~~G~y~~ 438 (478)
T PRK09593 360 LNTIWDRYQKPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCID-LVSAGTGEMKK 438 (478)
T ss_pred HHHHHHHcCCCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchH-hhcccCCCccC
Confidence 344555556789999999863211 00 01223556666666663 2 346999999987 3334322 234
Q ss_pred hCCccc
Q 009560 498 RNNYLQ 503 (532)
Q Consensus 498 ~~g~~~ 503 (532)
+-|++-
T Consensus 439 RfGl~~ 444 (478)
T PRK09593 439 RYGFIY 444 (478)
T ss_pred eeceEE
Confidence 566664
No 324
>PRK09989 hypothetical protein; Provisional
Probab=23.95 E-value=6.9e+02 Score=24.44 Aligned_cols=96 Identities=20% Similarity=0.246 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCC
Q 009560 264 SLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEP 343 (532)
Q Consensus 264 ~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP 343 (532)
..+.++++++.|++.|...|. +| +|... .+ .......+..++-++.+++..++....+++|.+|..
T Consensus 83 ~~~~l~~~i~~A~~lg~~~v~-v~--~g~~~----~~-------~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l~~~ 148 (258)
T PRK09989 83 ARADIDLALEYALALNCEQVH-VM--AGVVP----AG-------EDAERYRAVFIDNLRYAADRFAPHGKRILVEALSPG 148 (258)
T ss_pred HHHHHHHHHHHHHHhCcCEEE-EC--ccCCC----CC-------CCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 467899999999999998664 23 22110 00 111355677888888888888877777889988864
Q ss_pred CCCCCCcccHHHHHHHHHHHHHhhCCC-cEEEEeC
Q 009560 344 SAATVPLDILVPYYKQGYQIVRKYSPT-AYVIVCQ 377 (532)
Q Consensus 344 ~~~~~~~~~l~~~~~~~~~aIR~~~~~-~~Viv~~ 377 (532)
..... .+. -.+++.+.|+++++. ..+.+..
T Consensus 149 ~~~~~---~~~-~~~~~~~ll~~v~~~~v~l~lD~ 179 (258)
T PRK09989 149 VKPHY---LFS-SQYQALAIVEEVARDNVFIQLDT 179 (258)
T ss_pred CCCCC---ccC-CHHHHHHHHHHcCCCCeEEEeeh
Confidence 32111 111 235678888998854 4455543
No 325
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=23.72 E-value=1.3e+02 Score=33.08 Aligned_cols=74 Identities=11% Similarity=0.019 Sum_probs=43.2
Q ss_pred HHHHHHhcCCCcEEEeccCcccCCC---CC--CHH----HHHHHHHHHHHHH-Hh--CCCcEEEEcccCCCCCCchH-hh
Q 009560 430 QLQALNNANGPLVFIGEWVNEWNVT---SG--TQK----DYQDFGSAQLEVY-NA--ASFGWAYWTLKNDRKHWDFE-WN 496 (532)
Q Consensus 430 ~~~~~~~~~g~pv~vGEwG~~~~~~---~a--~~~----~~~~~~~~ql~~~-~~--~~~Gw~yW~~k~e~~~Ws~~-~~ 496 (532)
.+..+.+..+.||+|.|=|...... .. ..+ -++.+++++..+. +. .-.|.++|++-. +-.|..- -.
T Consensus 358 ~L~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~D-n~Ew~~G~y~ 436 (476)
T PRK09589 358 SLNWFWDHYQLPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCID-LVSAGTGEMK 436 (476)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccccc-cccccCCccc
Confidence 3444555666789999999863211 10 011 2345566666665 32 346999999987 3345443 34
Q ss_pred HhCCcccC
Q 009560 497 IRNNYLQL 504 (532)
Q Consensus 497 ~~~g~~~~ 504 (532)
.+-|++--
T Consensus 437 ~RfGlv~V 444 (476)
T PRK09589 437 KRYGFIYV 444 (476)
T ss_pred cceeeEEE
Confidence 66676643
No 326
>PRK15222 putative pilin structural protein SafD; Provisional
Probab=23.63 E-value=5.9e+02 Score=23.58 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=37.9
Q ss_pred cCCeEEEEecCCCceeEEcCCCCC-CcceEEEEEecCCe--EEEEecCCeEEEEeCCCceEEEeecCCCCCceEEEEEcC
Q 009560 75 TLEKYVCAESGGGTDVSVTRDVAS-SWETFTLWRVSESE--FQFRTSQGQFLTCDGEGCVVSATAKSPSTPETFEIERNN 151 (532)
Q Consensus 75 ~~~~yv~ae~gg~~~l~anr~~~~-~wE~f~~~~~~~~~--~~lr~~~~~~v~~~~~g~~~~a~~~~~~~~e~F~~v~~~ 151 (532)
+.|+-.|-|.-=|--+-.|-...+ .=+.+-|-.-++.. .+.| -.|+=|.-+..++ .=..+.+-...++|+|+.++
T Consensus 56 atGrI~~~g~htGF~Vwsna~q~gg~p~~Yil~G~~ds~h~LrVR-l~G~GW~pd~~~g-~Giv~~~~e~~~~FdVv~DG 133 (156)
T PRK15222 56 AQGWVTYHGSHSGFRVWSDEQKAGNTPTVLLLSGQQDPRHHIQVR-LEGEGWQPDTVSG-RGAILRTAADNASFSVVVDG 133 (156)
T ss_pred EEEEEEeCCCceeEEEEecccccCCCccEEEEECCCCCcceEEEE-ecCCCccCCCCCC-ceeEEecCCcceEEEEEEeC
Confidence 345444444443333444433333 22334322233333 4444 3444455555343 22233444588999999996
Q ss_pred CCcE
Q 009560 152 DSRV 155 (532)
Q Consensus 152 ~~~v 155 (532)
+.+|
T Consensus 134 nQ~v 137 (156)
T PRK15222 134 NQEV 137 (156)
T ss_pred CEec
Confidence 5444
No 327
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=23.23 E-value=64 Score=31.66 Aligned_cols=53 Identities=13% Similarity=0.233 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEE
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIID 285 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILD 285 (532)
-.+.+...++|.+.|=+-+.|...... . ....++.+.++++.|+++||+|||-
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~----~-~~~~~~~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSG----N-EDEVIEEIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTT----H-HHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccc----c-HHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 467888899999999998876322111 1 2347888999999999999999998
No 328
>PRK01076 L-rhamnose isomerase; Provisional
Probab=23.07 E-value=9.7e+02 Score=25.86 Aligned_cols=128 Identities=14% Similarity=0.168 Sum_probs=67.6
Q ss_pred HHHHHHHHc--CCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCC-C
Q 009560 229 EDFNFLYRH--GINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDG-T 305 (532)
Q Consensus 229 ~d~~~la~~--G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g-~ 305 (532)
+|++.+-++ |-..|=|++.|-. ....-.-++=.-+.+...++||+++||+ ||+-. |-|.|....+| +
T Consensus 77 ~D~~~~~~L~pg~~~vnLH~~y~~---~~~~vdrd~~~p~~f~~w~~~Ak~~Glg--lDfNp-----n~Fsh~~~k~G~S 146 (419)
T PRK01076 77 ADLEKALSLIPGKHRLNLHAIYLE---SDTPVDRDEIEPEHFKNWVEWAKENGLG--LDFNP-----TCFSHPLSADGFT 146 (419)
T ss_pred HHHHHHHHhcCCCCceeeeccccc---CCCcccccccCcccHHHHHHHHHHcCCC--cCcCc-----ccCCCccccCCCc
Confidence 777777776 7778888888731 1111011111336788999999999997 44221 33555443333 2
Q ss_pred CCCCChhhHHHHHHHH---HHHHH----HhCCCC--cEEEEEecc-CCCCCCCCcccHHHHHHHHHHHHHhhC--CC
Q 009560 306 TDWPASDYISQTLDVI---DFLAS----RYAKHP--ALLGIELLN-EPSAATVPLDILVPYYKQGYQIVRKYS--PT 370 (532)
Q Consensus 306 ~~W~~~~~~~~~~~~w---~~la~----ry~~~p--~v~g~EL~N-EP~~~~~~~~~l~~~~~~~~~aIR~~~--~~ 370 (532)
..=.+++.++.+++.- +.|++ +.+... +++.=+=.| =|.. .. .-++.+++.++.|-+.- |.
T Consensus 147 Ls~pD~~iR~fwI~H~~~c~~I~~~~g~~lGs~~~~niWipDG~kd~P~q---~~-~~r~Rl~eSLdeI~a~~~d~~ 219 (419)
T PRK01076 147 LSHPDPEIRQFWIEHCKASRRISAYFGEELGTPCVMNIWIPDGMKDIPVD---RL-APRQRLLESLDEIISEKLDPA 219 (419)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeEEeCCCCCCCccc---cc-CHHHHHHHHHHHHHHhhcCcc
Confidence 2112355566665433 23444 444433 555423333 2321 22 45556666677766654 54
No 329
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.91 E-value=2e+02 Score=25.63 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCE
Q 009560 226 ITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIK 281 (532)
Q Consensus 226 ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~ 281 (532)
++.+|+..+|++||.+|== .-|+..+|-.+ . .+.+-++|++.||-
T Consensus 16 i~~~D~~~iaa~GFksiI~-------nRPDgEe~~QP-~---~~~i~~aa~~aGl~ 60 (130)
T COG3453 16 ISPADIASIAALGFKSIIC-------NRPDGEEPGQP-G---FAAIAAAAEAAGLT 60 (130)
T ss_pred CCHHHHHHHHHhccceecc-------cCCCCCCCCCC-C---hHHHHHHHHhcCCc
Confidence 5679999999999998821 11211112111 1 44556788889975
No 330
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=22.77 E-value=5.2e+02 Score=26.74 Aligned_cols=100 Identities=16% Similarity=0.150 Sum_probs=61.1
Q ss_pred cChHHHHHHHHHHHH-H----cCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCC-CCcEE
Q 009560 262 GGSLEALDNALSWAE-A----YNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAK-HPALL 335 (532)
Q Consensus 262 ~~~l~~Ld~~v~~a~-k----~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~-~p~v~ 335 (532)
+..++.+.+.|..+. + -...+|+..|..|=+.- . .| +.+.++..+..+.|+++.+. .+..+
T Consensus 166 p~yi~a~~~~I~~~l~~~~~~~~~~llfSaHglP~~~~---~----~G------d~Y~~~~~~ta~~l~~~l~~~~~~~~ 232 (322)
T TIGR00109 166 PKYIKALADSIKETLASFPEPDNAVLLFSAHGLPQSYV---D----EG------DPYPAECEATTRLIAEKLGFPNEYRL 232 (322)
T ss_pred cHHHHHHHHHHHHHHHhcCCcCCcEEEEeCCCCchhHh---h----CC------CChHHHHHHHHHHHHHHcCCCCCeEE
Confidence 345566555554331 2 24689999999883211 0 01 12456777777888888763 34566
Q ss_pred EEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEeCCCC
Q 009560 336 GIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQRIG 380 (532)
Q Consensus 336 g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~~~~ 380 (532)
+|+----| .+.+....++.+..+.+.+..+.+++..++-
T Consensus 233 ~fQS~~g~------~~Wl~P~~~~~l~~l~~~G~k~V~vvP~gFv 271 (322)
T TIGR00109 233 TWQSRVGP------EPWLGPYTEELLEKLGEQGVQHIVVVPIGFT 271 (322)
T ss_pred EEeCCCCC------CCcCCCCHHHHHHHHHHcCCceEEEECCccc
Confidence 77663222 1233556667777888888888888887764
No 331
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=22.72 E-value=6.3e+02 Score=23.70 Aligned_cols=64 Identities=13% Similarity=0.140 Sum_probs=37.7
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCC
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAA 289 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~ 289 (532)
.|...--+.|++.|++++-.--.= ....+.....+.....+.|.+-++.|.+.+-.+.|.+|.-
T Consensus 30 ~ia~~l~~~L~~~G~~V~ltr~~d-~~~~~~~~~~~~~~~~~~L~~R~~~An~~~adlfiSiH~N 93 (189)
T TIGR02883 30 EIALKLKDYLQEQGALVVMTREDD-SDLASEGTKGYSRRKIEDLRKRVKLINESEADLFISIHLN 93 (189)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCC-cCccccccccccccccCCHHHHHHHHHhcCCCEEEEEecC
Confidence 344666777888999888652210 0000000001111223347777899999999999999974
No 332
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=22.72 E-value=1.1e+02 Score=31.43 Aligned_cols=28 Identities=18% Similarity=0.156 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHcCCEEEEEcCCCCC
Q 009560 264 SLEALDNALSWAEAYNIKCIIDLHAAPG 291 (532)
Q Consensus 264 ~l~~Ld~~v~~a~k~Gi~VILDlH~~pG 291 (532)
.+.-++++.+.|+++|+.+++|--+..|
T Consensus 153 ~~~~~~~I~~l~~~~~~~~ivD~a~~~g 180 (353)
T TIGR03235 153 SIQPIREIAEVLEAHEAFFHVDAAQVVG 180 (353)
T ss_pred eccCHHHHHHHHHHcCCEEEEEchhhcC
Confidence 4455899999999999999999755433
No 333
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=22.67 E-value=6.4e+02 Score=23.63 Aligned_cols=118 Identities=9% Similarity=0.028 Sum_probs=66.6
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTD 307 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~ 307 (532)
.-|+..+|+.|++.|=|-.. +.. .+.. ..++.-++.|++.||.|=+ .|-+ +.
T Consensus 14 ~id~~~vk~~gi~fviiKat-----eG~---~~~D---~~~~~~~~~a~~~Gl~vG~-Yhy~--------~~-------- 65 (191)
T cd06413 14 DIDWARVRAQGVSFAYIKAT-----EGG---DHVD---KRFAENWRGARAAGLPRGA-YHFF--------TF-------- 65 (191)
T ss_pred CcCHHHHHhCCCcEEEEEEc-----CCC---CccC---HHHHHHHHHHHHcCCceEE-EEEE--------ec--------
Confidence 34799999999997765442 111 1111 3467778889999997633 2211 00
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEe
Q 009560 308 WPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVC 376 (532)
Q Consensus 308 W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~ 376 (532)
.+ ...++...+++.+...-.+.|-++-+|--.... ...+...+.++.++.+++|++.....++|..
T Consensus 66 -~~-~~~~qA~~f~~~~~~~~~~~~~~lD~E~~~~~~-~~~~~~~~~~~~~~f~~~v~~~~G~~~~iY~ 131 (191)
T cd06413 66 -CR-SGAEQAANFIRNVPKDPGALPPVVDVEWNGNSA-TCPSAEEVLAELQVFLDALEAHYGKRPIIYT 131 (191)
T ss_pred -CC-CHHHHHHHHHHhcCCCCCcCCeEEEEEecCCCC-CCCCHHHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 00 123445566666544333445555555322111 1134567888899999999987555555544
No 334
>PLN02814 beta-glucosidase
Probab=22.67 E-value=1.2e+02 Score=33.61 Aligned_cols=71 Identities=13% Similarity=0.115 Sum_probs=39.1
Q ss_pred HHHHhcC-CCcEEEeccCcccCCCC-CCHHHH----HHHHHHHHHHHHh--CCCcEEEEcccCCCCCCchHhhHhCCccc
Q 009560 432 QALNNAN-GPLVFIGEWVNEWNVTS-GTQKDY----QDFGSAQLEVYNA--ASFGWAYWTLKNDRKHWDFEWNIRNNYLQ 503 (532)
Q Consensus 432 ~~~~~~~-g~pv~vGEwG~~~~~~~-a~~~~~----~~~~~~ql~~~~~--~~~Gw~yW~~k~e~~~Ws~~~~~~~g~~~ 503 (532)
..+.+.. .+||+|.|-|......+ -..+.+ +.+++++..+.+. .-.|.++|++-. +-.|..-...+-|++-
T Consensus 379 ~~~~~rY~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllD-nfEW~~Gy~~RfGLvy 457 (504)
T PLN02814 379 EHIKQSYNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMID-LYELLGGYTTSFGMYY 457 (504)
T ss_pred HHHHHhcCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchh-hhchhccccCccceEE
Confidence 3344433 56899999998633211 111223 4445555555542 346999999987 3335433445566654
No 335
>PLN02229 alpha-galactosidase
Probab=22.63 E-value=8e+02 Score=26.70 Aligned_cols=124 Identities=13% Similarity=0.097 Sum_probs=64.3
Q ss_pred HHHcCCCEEEEccccccccCCCCCCCC--CcChHH-HHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCC
Q 009560 234 LYRHGINTVRIPVGWWIAFDPDPPAPF--IGGSLE-ALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPA 310 (532)
Q Consensus 234 la~~G~N~VRIpv~ww~~~~~~~~~~~--~~~~l~-~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~ 310 (532)
++++|.+.|=|--+|........ +.+ ++..+- -++.+.++.++.||+. -+|..+|.. .++...|...
T Consensus 94 l~~~Gy~yv~iDDgW~~~~rd~~-G~l~~d~~rFP~G~k~ladyiH~~GlKf--GIy~d~G~~----TC~~~pGS~g--- 163 (427)
T PLN02229 94 LADLGYIHVNIDDCWSNLKRDSK-GQLVPDPKTFPSGIKLLADYVHSKGLKL--GIYSDAGVF----TCQVRPGSLF--- 163 (427)
T ss_pred HHhCCCEEEEEcCCcCCCCcCCC-CCEEEChhhcCCcHHHHHHHHHHCCCce--EEeccCCCc----ccCCCCCCcc---
Confidence 47789999999888853211111 111 112222 2778889999999985 446666632 1221222211
Q ss_pred hhhHHHHHHHHHHHHHHhCCC-CcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEe-CCCCCCCc
Q 009560 311 SDYISQTLDVIDFLASRYAKH-PALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVC-QRIGNADP 384 (532)
Q Consensus 311 ~~~~~~~~~~w~~la~ry~~~-p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~-~~~~~~~~ 384 (532)
-+.++ |+.|++- -..+=+|=.+.+. ....+-|+.+.+||++.+.. |+++ ..|+..+|
T Consensus 164 ~e~~D---------A~~fA~WGVDylK~D~C~~~~------~~~~~~y~~m~~AL~~tGRp--I~~SlC~WG~~~p 222 (427)
T PLN02229 164 HEVDD---------ADIFASWGVDYLKYDNCYNLG------IKPIERYPPMRDALNATGRS--IFYSLCEWGVDDP 222 (427)
T ss_pred HHHHH---------HHHHHHcCCCEEEecCCCCCC------cchhHHHHHHHHHHHhhCCC--cEEEecCCCCCCH
Confidence 11111 4444431 1223355454432 12345678899999998754 4444 23544444
No 336
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=22.62 E-value=7.4e+02 Score=24.33 Aligned_cols=127 Identities=15% Similarity=0.120 Sum_probs=75.6
Q ss_pred HHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCC
Q 009560 229 EDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDW 308 (532)
Q Consensus 229 ~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W 308 (532)
+-++.+++.|.+.|=||-- |+ +..+.++++++.|+++||++++-+|..
T Consensus 92 ~~i~~~~~~Gadgvii~dl-----------p~--e~~~~~~~~~~~~~~~Gl~~~~~v~p~------------------- 139 (244)
T PRK13125 92 NFLNMARDVGADGVLFPDL-----------LI--DYPDDLEKYVEIIKNKGLKPVFFTSPK------------------- 139 (244)
T ss_pred HHHHHHHHcCCCEEEECCC-----------CC--CcHHHHHHHHHHHHHcCCCEEEEECCC-------------------
Confidence 3467788888888876520 11 123568899999999999999998842
Q ss_pred CChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCchhhh
Q 009560 309 PASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQRIGNADPLELY 388 (532)
Q Consensus 309 ~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~~~~~~~~~~~~ 388 (532)
...++... +++. .+.++-+ . -+|... ..+..-..+.++.+|+..++.+|+++.+.. ++....
T Consensus 140 ---T~~e~l~~----~~~~---~~~~l~m-s-v~~~~g----~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~--~~e~i~ 201 (244)
T PRK13125 140 ---FPDLLIHR----LSKL---SPLFIYY-G-LRPATG----VPLPVSVERNIKRVRNLVGNKYLVVGFGLD--SPEDAR 201 (244)
T ss_pred ---CCHHHHHH----HHHh---CCCEEEE-E-eCCCCC----CCchHHHHHHHHHHHHhcCCCCEEEeCCcC--CHHHHH
Confidence 11222222 2221 2334422 2 245432 146666777888889887767788887663 333333
Q ss_pred hc-cCCCCcEEEEeeecc
Q 009560 389 QA-NIGLHNIVVDLHYYN 405 (532)
Q Consensus 389 ~~-~~~~~nvv~s~H~Y~ 405 (532)
.. ..+.+-+|+......
T Consensus 202 ~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 202 DALSAGADGVVVGTAFIE 219 (244)
T ss_pred HHHHcCCCEEEECHHHHH
Confidence 32 245666777765543
No 337
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=22.54 E-value=6.2e+02 Score=23.36 Aligned_cols=119 Identities=13% Similarity=-0.008 Sum_probs=64.7
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTD 307 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~ 307 (532)
+-|+..+++.|+..|=|-.+. ... -.++ .++.-++.|++.||.|=+ .|-.-. .
T Consensus 9 ~~dw~~~k~~gi~fviikate-----G~~--~~D~----~~~~n~~~a~~aGl~~G~-Yhf~~~--------~------- 61 (181)
T PF01183_consen 9 DIDWQKVKAAGIDFVIIKATE-----GTS--YVDP----YFESNIKNAKAAGLPVGA-YHFARA--------T------- 61 (181)
T ss_dssp S-SHHHHHHTTEEEEEEEEEE-----TTT--EE-T----THHHHHHHHHHTTSEEEE-EEE--T--------T-------
T ss_pred ccCHHHHHHCCCCEEEEEeee-----CCC--eecc----hHHHHHHHHHHcCCeEEE-EEEecc--------C-------
Confidence 455999999998766444321 110 1111 266778889999999643 332110 0
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEe
Q 009560 308 WPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVC 376 (532)
Q Consensus 308 W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~ 376 (532)
...+..++...+++.+. ......-.+.+|+=.. .....+.....++.++.++.|++.....++|-.
T Consensus 62 -~~~~a~~qA~~f~~~~~-~~~~~~~~~~lD~E~~-~~~~~~~~~~~~~~~~f~~~~~~~~G~~~~iY~ 127 (181)
T PF01183_consen 62 -NSSDAEAQADYFLNQVK-GGDPGDLPPALDVEDD-KSNNPSKSDNTAWVKAFLDEVEKAAGYKPGIYT 127 (181)
T ss_dssp -THCHHHHHHHHHHHCTH-TSSTSCS-EEEEE-S--GGCCSSHHHHHHHHHHHHHHHHHHCTSEEEEEE
T ss_pred -CcccHHHHHHHHHHHhc-ccCCCcceEEEecccc-ccCCCCHHHHHHHHHHHHHHHHHHhCCceeEee
Confidence 01244555555666554 2222222234555422 112246788999999999999876555666544
No 338
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=22.32 E-value=2.7e+02 Score=21.16 Aligned_cols=43 Identities=23% Similarity=0.134 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEE
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIID 285 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILD 285 (532)
++-++..++.|++.|=|. |-. .+..+.++.+.++++||+||.-
T Consensus 18 ~~~~~~a~~~g~~~v~iT-------Dh~--------~~~~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 18 EELVKRAKELGLKAIAIT-------DHG--------NLFGAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred HHHHHHHHHcCCCEEEEe-------eCC--------cccCHHHHHHHHHHcCCeEEEE
Confidence 678888999999998652 211 1222456677888999999864
No 339
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=22.28 E-value=8.3e+02 Score=24.77 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEcCCC
Q 009560 265 LEALDNALSWAEAYNIKCIIDLHAA 289 (532)
Q Consensus 265 l~~Ld~~v~~a~k~Gi~VILDlH~~ 289 (532)
...|..-|+.|++.|++|+|.+-..
T Consensus 58 c~~~~~dI~~cq~~G~KVlLSIGG~ 82 (280)
T cd02877 58 CPQLGADIKHCQSKGKKVLLSIGGA 82 (280)
T ss_pred chhHHHHHHHHHHCCCEEEEEccCC
Confidence 4578999999999999999998764
No 340
>PF03498 CDtoxinA: Cytolethal distending toxin A/C family; InterPro: IPR003558 Escherichia coli, Haemophilus spp and Campylobacter spp. all produce a toxin that is seen to cause distension in certain cell lines [, ], which eventually disintegrate and die. This novel toxin, termed cytolethal distending toxin (cdt), has three subunits: A, B and C. Their sizes are approx. 27.7, 29.5 and 19.9kDa respectively [], and they appear to be entirely novel []. Further research on the complete toxin has revealed that it blocks the cell cycle at stage G2, through inactivation of the cyclin-dependent kinase Cdk1, and without induction of DNA breaks. This leads to multipolar abortive mitosis and micronucleation, associated with centrosomal amplification []. The roles of each subunit are unclear, but it is believed that they have separate roles in pathogenicity. This entry represents the A and C subunits.; GO: 0009405 pathogenesis; PDB: 2F2F_A 1SR4_C.
Probab=22.25 E-value=6.2e+02 Score=23.29 Aligned_cols=57 Identities=26% Similarity=0.314 Sum_probs=32.0
Q ss_pred CCeEEEEe-cCCeEEEEeCCCceEEEee--cCCCCCceEEEEEcCCCcEEEEe-cCCceEEec
Q 009560 110 ESEFQFRT-SQGQFLTCDGEGCVVSATA--KSPSTPETFEIERNNDSRVHIKL-KSGTYLQAT 168 (532)
Q Consensus 110 ~~~~~lr~-~~~~~v~~~~~g~~~~a~~--~~~~~~e~F~~v~~~~~~v~i~a-~nG~~l~a~ 168 (532)
.++|+|+. ..++=+.+..+| ++... +.-..-.-|+|+.-..+-|-||. .+|.=|++.
T Consensus 51 ~g~Vqf~n~~~~~CL~~~~~G--~~~~~~C~~~~~~q~F~iiPtttgAVQIks~~~~~Cl~~~ 111 (150)
T PF03498_consen 51 FGYVQFVNPKTGTCLAAYGNG--VFHYKSCDQDNLEQVFSIIPTTTGAVQIKSLSTGECLQTF 111 (150)
T ss_dssp TCEEEEEETTTSEEEEEETTC--EEEE--TTTCHGHH-EEEEEBTTS-EEEEETTT--EEEE-
T ss_pred CCEEEEEcCCCCcceeecCCC--eEeecccCCCChhceEEEEEcCCCcEEEEecCCCceEEec
Confidence 48899999 667733333344 33322 11123467999999888898998 555545444
No 341
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=22.15 E-value=8.3e+02 Score=26.89 Aligned_cols=131 Identities=20% Similarity=0.253 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHcCCCEEEEccccccccCCC------CCCCCCcChHHHHHHHHHHHHHcCCE-EEEEcCCCCCCCCCCCC
Q 009560 226 ITIEDFNFLYRHGINTVRIPVGWWIAFDPD------PPAPFIGGSLEALDNALSWAEAYNIK-CIIDLHAAPGSQNGMEH 298 (532)
Q Consensus 226 ite~d~~~la~~G~N~VRIpv~ww~~~~~~------~~~~~~~~~l~~Ld~~v~~a~k~Gi~-VILDlH~~pGsqn~~~~ 298 (532)
.|+++++.|+++|++.+-+-.- ..++. |..+ ...++.=-+.++.|++.||. |=+..-
T Consensus 178 lt~eey~~LkeaGv~~~~l~qE---TY~~ety~~~hp~g~--k~~y~~Rl~t~~rA~~aGi~~Vg~G~L----------- 241 (469)
T PRK09613 178 TTVENYKKLKEAGIGTYQLFQE---TYHKPTYEKMHPSGP--KSDYDWRLTAMDRAMEAGIDDVGIGVL----------- 241 (469)
T ss_pred CCHHHHHHHHHcCCCEEEeccc---cCCHHHHHhcCCCCC--CCCHHHHHHHHHHHHHcCCCeeCeEEE-----------
Confidence 5899999999999997755221 11110 1111 22455555677888888885 433221
Q ss_pred CCCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCC-C-Ccc--cHHHHHHHHHHHHHhhCCCcEEE
Q 009560 299 SASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAAT-V-PLD--ILVPYYKQGYQIVRKYSPTAYVI 374 (532)
Q Consensus 299 sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~-~-~~~--~l~~~~~~~~~aIR~~~~~~~Vi 374 (532)
.|-.+|. ...-......+.|-++|+-.|..+.+-.++ |..++ . ... .-..-+.+++.++|=.-|..-|+
T Consensus 242 ----~GLge~~--~E~~~l~~hl~~L~~~~gvgp~tIsvprl~-P~~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~~I~ 314 (469)
T PRK09613 242 ----FGLYDYK--FEVLGLLMHAEHLEERFGVGPHTISVPRLR-PADGSDLENFPYLVSDEDFKKIVAILRLAVPYTGMI 314 (469)
T ss_pred ----EcCCCCH--HHHHHHHHHHHHHHHhhCCCCcccccccee-cCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCCCce
Confidence 1222221 222223455667778885445433332222 32211 1 111 12334568899999999999999
Q ss_pred EeCCC
Q 009560 375 VCQRI 379 (532)
Q Consensus 375 v~~~~ 379 (532)
++.+-
T Consensus 315 lStRE 319 (469)
T PRK09613 315 LSTRE 319 (469)
T ss_pred eecCC
Confidence 88654
No 342
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=22.13 E-value=2.7e+02 Score=30.33 Aligned_cols=62 Identities=19% Similarity=0.138 Sum_probs=41.4
Q ss_pred ccCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEE
Q 009560 224 TFITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIID 285 (532)
Q Consensus 224 t~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILD 285 (532)
+-.|.++.+.+.++|++.|++.++--.......-...-...+..+.++.+.|+++++.||.|
T Consensus 272 ~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviad 333 (450)
T TIGR01302 272 NVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIAD 333 (450)
T ss_pred eCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEe
Confidence 34589999999999999999976421000000000011125778888889999999999886
No 343
>TIGR02867 spore_II_P stage II sporulation protein P. Stage II sporulation protein P is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIIP, along with SpoIIM and SpoIID, is one of three major proteins involved in engulfment of the forespore by the mother cell. This protein family is named for the single member in Bacillus subtilis, although most sporulating bacteria have two members.
Probab=22.06 E-value=1.9e+02 Score=27.90 Aligned_cols=54 Identities=19% Similarity=0.158 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHH-HHHHHc-CCEEEEEcCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNAL-SWAEAY-NIKCIIDLHAA 289 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v-~~a~k~-Gi~VILDlH~~ 289 (532)
+.--+.|.+.|++++.-.- ...+..|.. +..+-.+.+ +..+++ +|.++||+|..
T Consensus 37 ~~L~~~Le~~Gi~vihd~t-------~~~~~~y~~-sY~~Sr~tv~~~l~~~p~i~~viDiHRD 92 (196)
T TIGR02867 37 DRLAKELEEKGIGVIHDKT-------VHDGLNYEQ-SYDRSRETVKKALKENKDLKYIIDLHRD 92 (196)
T ss_pred HHHHHHHHHCCCeEEEeCC-------ccCCccHHH-HHHHHHHHHHHHHHHCCCceEEEEeecC
Confidence 4555667888999886422 111113333 333333333 444455 68999999974
No 344
>PF09270 BTD: Beta-trefoil DNA-binding domain; InterPro: IPR015350 This DNA-binding domain adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and corepressors (SMRT/N-Cor and CIR) []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2FO1_A 3NBN_A 2F8X_C 3V79_C 3IAG_C 3BRG_C.
Probab=22.03 E-value=3.5e+02 Score=25.24 Aligned_cols=49 Identities=24% Similarity=0.540 Sum_probs=26.1
Q ss_pred ccceEEEEEe-----cCCeEEEEecC---CCceeEEcCCCCCCcceEEEEEec-----CCeEEEE
Q 009560 65 DGTQVQIKSV-----TLEKYVCAESG---GGTDVSVTRDVASSWETFTLWRVS-----ESEFQFR 116 (532)
Q Consensus 65 ~g~~v~~~s~-----~~~~yv~ae~g---g~~~l~anr~~~~~wE~f~~~~~~-----~~~~~lr 116 (532)
.|+.|+|-.. ..-||+++|++ +|..++| +...|+.|.+.-++ ...+..|
T Consensus 5 ~Gs~VsLFNRirSQTVsTrYL~v~~~~~~~g~~f~a---s~~~W~~F~I~lvd~~~~~~~~~~~~ 66 (158)
T PF09270_consen 5 SGSTVSLFNRIRSQTVSTRYLHVENGASGHGPRFVA---SSTQWDPFTIHLVDDPRSNAEPFDVR 66 (158)
T ss_dssp TTCEEEEEEECTTECCCEEEEEEETT------EEEE---ESS----EEEEEE-TT--SSSCEEEE
T ss_pred CCCEEEeEcccccccccceeeecCCCcccceeeeee---ccCcccceEEEEecCCccccCCCCCC
Confidence 4666666533 23479999987 4445665 34589999988883 2336655
No 345
>PF02156 Glyco_hydro_26: Glycosyl hydrolase family 26; InterPro: IPR022790 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 26 GH26 from CAZY encompasses mainly mannan endo-1,4-beta-mannosidases (3.2.1.78 from EC). Mannan endo-1,4-beta-mannosidase hydrolyses mannan and galactomannan, but displays little activity towards other plant cell wall polysaccharides []. The enzyme randomly hydrolyses 1,4-beta-D-linkages in mannans, galacto-mannans, glucomannans and galactoglucomannans. This entry also incoporates the enzyme Endogluconase H 3.2.1.4 from EC catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans. ; GO: 0008810 cellulase activity, 0016985 mannan endo-1,4-beta-mannosidase activity, 0006080 substituted mannan metabolic process; PDB: 2QHA_A 3CBW_A 2WHK_A 2VI0_A 2BVD_A 2BV9_A 2CIT_A 2V3G_A 2CIP_A 2X2Y_B ....
Probab=22.01 E-value=2.4e+02 Score=29.26 Aligned_cols=25 Identities=8% Similarity=0.007 Sum_probs=15.9
Q ss_pred hHHHHHHHHH---HHHHcCCEEEEEcCC
Q 009560 264 SLEALDNALS---WAEAYNIKCIIDLHA 288 (532)
Q Consensus 264 ~l~~Ld~~v~---~a~k~Gi~VILDlH~ 288 (532)
.++.||++.+ ..++.|+-||+-..|
T Consensus 132 ~~~~ld~iA~~l~~l~~~~vPVl~Rp~H 159 (311)
T PF02156_consen 132 FKADLDRIADFLKQLKDAGVPVLFRPFH 159 (311)
T ss_dssp HHHHHHHHHHHHHHHHCTTS-EEEEEST
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEeehh
Confidence 3555565554 456689999997665
No 346
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=22.00 E-value=1.7e+02 Score=33.17 Aligned_cols=51 Identities=12% Similarity=0.006 Sum_probs=38.7
Q ss_pred cccCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcC
Q 009560 223 NTFITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLH 287 (532)
Q Consensus 223 ~t~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH 287 (532)
..-+.+.+++..++.|++.|||..... ..+.+...++.|+++|+.|...+.
T Consensus 89 pddvv~~~v~~a~~~Gvd~irif~~ln--------------d~~n~~~~i~~ak~~G~~v~~~i~ 139 (582)
T TIGR01108 89 ADDVVERFVKKAVENGMDVFRIFDALN--------------DPRNLQAAIQAAKKHGAHAQGTIS 139 (582)
T ss_pred chhhHHHHHHHHHHCCCCEEEEEEecC--------------cHHHHHHHHHHHHHcCCEEEEEEE
Confidence 334557889999999999999965321 025688889999999999887753
No 347
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.99 E-value=7.8e+02 Score=24.32 Aligned_cols=118 Identities=13% Similarity=0.062 Sum_probs=68.3
Q ss_pred ChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccC
Q 009560 263 GSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRDGTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNE 342 (532)
Q Consensus 263 ~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NE 342 (532)
..++.+++.++.|++.|..+|. ++..+ .. .+ -..++..+++++.++.+++.-+.+.-.+++|..+.
T Consensus 96 ~~~~~~~~~i~~a~~lG~~~i~-~~~~~-------~~---~~---~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~~ 161 (283)
T PRK13209 96 QALEIMRKAIQLAQDLGIRVIQ-LAGYD-------VY---YE---QANNETRRRFIDGLKESVELASRASVTLAFEIMDT 161 (283)
T ss_pred HHHHHHHHHHHHHHHcCCCEEE-ECCcc-------cc---cc---ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeecCC
Confidence 4688899999999999999876 44311 00 00 01245667778888888777666666778887643
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHhhCC-CcEEEEeCCCC---CCCchhhhhccCCCCcEEEEeeeccc
Q 009560 343 PSAATVPLDILVPYYKQGYQIVRKYSP-TAYVIVCQRIG---NADPLELYQANIGLHNIVVDLHYYNL 406 (532)
Q Consensus 343 P~~~~~~~~~l~~~~~~~~~aIR~~~~-~~~Viv~~~~~---~~~~~~~~~~~~~~~nvv~s~H~Y~~ 406 (532)
+.. .. ..++.+.+++++. +.-+.+..+.. ..++..... ....-+..+|.-..
T Consensus 162 ~~~-----~~----~~~~~~ll~~v~~~~lgl~~D~~h~~~~~~~~~~~i~---~~~~~i~~vHikD~ 217 (283)
T PRK13209 162 PFM-----NS----ISKALGYAHYLNSPWFQLYPDIGNLSAWDNDVQMELQ---AGIGHIVAFHVKDT 217 (283)
T ss_pred ccc-----CC----HHHHHHHHHHhCCCccceEeccchHHHhcCCHHHHHH---hCcCcEEEEEeccC
Confidence 321 11 2356777888764 44455543211 122222222 22345677787654
No 348
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=21.77 E-value=1.6e+02 Score=32.54 Aligned_cols=73 Identities=12% Similarity=0.088 Sum_probs=41.7
Q ss_pred HHHHHHhcCCCcEEEeccCcccCCC---CC------CHHHHHHHHHHHHHHHH-h--CCCcEEEEcccCCCCCCchH-hh
Q 009560 430 QLQALNNANGPLVFIGEWVNEWNVT---SG------TQKDYQDFGSAQLEVYN-A--ASFGWAYWTLKNDRKHWDFE-WN 496 (532)
Q Consensus 430 ~~~~~~~~~g~pv~vGEwG~~~~~~---~a------~~~~~~~~~~~ql~~~~-~--~~~Gw~yW~~k~e~~~Ws~~-~~ 496 (532)
.+..+.+..+.||+|.|-|...... .. ..+-++.+++++..+.+ . .-.|.++|++-. +-.|..- -.
T Consensus 359 ~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~D-nfEw~~G~y~ 437 (477)
T PRK15014 359 ALCELYERYQKPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCID-CVSFTTGQYS 437 (477)
T ss_pred HHHHHHHhcCCCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchh-hhcccCCCcc
Confidence 3445556667789999999864211 10 11123455666666663 2 336999999987 2334322 33
Q ss_pred HhCCccc
Q 009560 497 IRNNYLQ 503 (532)
Q Consensus 497 ~~~g~~~ 503 (532)
.+-|++-
T Consensus 438 ~RfGl~~ 444 (477)
T PRK15014 438 KRYGFIY 444 (477)
T ss_pred CccceEE
Confidence 5566664
No 349
>PRK09989 hypothetical protein; Provisional
Probab=21.76 E-value=1.3e+02 Score=29.76 Aligned_cols=57 Identities=7% Similarity=0.052 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEc
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDL 286 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDl 286 (532)
++-++..+++|...||+..++.. .....+...+...+.|.++.+.|+++|+.+.+-.
T Consensus 88 ~~~i~~A~~lg~~~v~v~~g~~~--~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 144 (258)
T PRK09989 88 DLALEYALALNCEQVHVMAGVVP--AGEDAERYRAVFIDNLRYAADRFAPHGKRILVEA 144 (258)
T ss_pred HHHHHHHHHhCcCEEEECccCCC--CCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 67788889999999998655421 1111111122356888889999999999988754
No 350
>PF00853 Runt: Runt domain; InterPro: IPR013524 The AML1 gene is rearranged by the t(8;21) translocation in acute myeloid leukemia []. The gene is highly similar to the Drosophila melanogaster segmentation gene runt and to the mouse transcription factor PEBP2 alpha subunit gene []. The region of shared similarity, known as the Runt domain, is responsible for DNA-binding and protein-protein interaction. In addition to the highly-conserved Runt domain, the AML-1 gene product carries a putative ATP-binding site (GRSGRGKS), and has a C-terminal region rich in proline and serine residues. The protein (known as acute myeloid leukemia 1 protein, oncogene AML-1, core-binding factor (CBF), alpha-B subunit, etc.) binds to the core site, 5'-pygpyggt-3', of a number of enhancers and promoters. The protein is a heterodimer of alpha- and beta-subunits. The alpha-subunit binds DNA as a monomer, and appears to have a role in the development of normal hematopoiesis. CBF is a nuclear protein expressed in numerous tissue types, except brain and heart; highest levels have been found to occur in thymus, bone marrow and peripheral blood. This domain occurs towards the N terminus of the proteins in this entry.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1E50_E 1LJM_A 1CO1_A 1H9D_C 1CMO_A 1EAO_B 1HJC_D 1HJB_F 2J6W_B 1EAN_A ....
Probab=21.59 E-value=65 Score=28.61 Aligned_cols=62 Identities=29% Similarity=0.419 Sum_probs=35.7
Q ss_pred ccccccccCCcccccceEEEEEecCCeEEEEecCCCceeEEcCCCCCCcceEEEEEecCCeEEEEecCCeEEE
Q 009560 52 PSLFDGILNGDMLDGTQVQIKSVTLEKYVCAESGGGTDVSVTRDVASSWETFTLWRVSESEFQFRTSQGQFLT 124 (532)
Q Consensus 52 ~~~~~~~~~~~~~~g~~v~~~s~~~~~yv~ae~gg~~~l~anr~~~~~wE~f~~~~~~~~~~~lr~~~~~~v~ 124 (532)
|..|.=+--.|.-|||+|++++ .|..--|||--..+++.-|+ +-+.++=.|-=|+.-||..+
T Consensus 39 P~~FkVvalg~V~DGT~Vtv~A-GNDEn~~aElRN~tavmknq----------vA~FnDLRFvGRSGRGKsFt 100 (135)
T PF00853_consen 39 PVAFKVVALGDVPDGTLVTVMA-GNDENYCAELRNATAVMKNQ----------VARFNDLRFVGRSGRGKSFT 100 (135)
T ss_dssp SS-EEEEESSS-STTEEEEEEE-EESSCSSBBEES-EEEEETT----------EEEESS-EECST-TTTSEEE
T ss_pred CCceeEEEEEEcCCCcEEEEEe-cCCchhhhhhhchhhhhhcc----------cccccccccccccCCccceE
Confidence 4445433445688999999997 66667788877666666665 34455544444554444443
No 351
>PRK12677 xylose isomerase; Provisional
Probab=21.58 E-value=9.5e+02 Score=25.56 Aligned_cols=133 Identities=14% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEccccccccC------CCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCC
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFD------PDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSAS 301 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~------~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~ 301 (532)
++--+.+++.|+...=+-......-. ..+........++.+.+.|+.|++.|...|+-.-...|+.......-
T Consensus 70 ~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~lts~d~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~- 148 (384)
T PRK12677 70 KRFKKALDETGLVVPMVTTNLFTHPVFKDGAFTSNDRDVRRYALRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDV- 148 (384)
T ss_pred HHHHHHHHHcCCeeEEEecCCCCCccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCH-
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhCCCC--cEEEEEecc-CCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEE
Q 009560 302 RDGTTDWPASDYISQTLDVIDFLASRYAKHP--ALLGIELLN-EPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIV 375 (532)
Q Consensus 302 ~~g~~~W~~~~~~~~~~~~w~~la~ry~~~p--~v~g~EL~N-EP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv 375 (532)
.+..+++++-++.++++-++.. -.+++|..+ ||.. ..+..-...+...|++++....+-+
T Consensus 149 ---------~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpkp~ep~~-----~~~l~t~~~al~li~~lg~~~~vGv 211 (384)
T PRK12677 149 ---------RAALDRYREAIDLLAAYVKDQGYDLRFALEPKPNEPRG-----DILLPTVGHALAFIATLEHPEMVGL 211 (384)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCC-----CeeeCCHHHHHHHHHHhCCCccEEE
No 352
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=21.34 E-value=9.1e+02 Score=24.89 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=28.5
Q ss_pred CCCcChHHHHHHHHHHHHHcCCEEEEEcCCCCCCC
Q 009560 259 PFIGGSLEALDNALSWAEAYNIKCIIDLHAAPGSQ 293 (532)
Q Consensus 259 ~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsq 293 (532)
-+++..++.+.++.+.++++|-++++-|+| +|.+
T Consensus 70 ~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H-~G~~ 103 (336)
T cd02932 70 LWNDEQIEALKRIVDFIHSQGAKIGIQLAH-AGRK 103 (336)
T ss_pred ecCHHHHHHHHHHHHHHHhcCCcEEEEccC-CCcC
Confidence 345668999999999999999999999988 4543
No 353
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=21.14 E-value=1.8e+02 Score=33.02 Aligned_cols=52 Identities=12% Similarity=0.010 Sum_probs=39.9
Q ss_pred ccccCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcC
Q 009560 222 RNTFITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLH 287 (532)
Q Consensus 222 w~t~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH 287 (532)
+..-+.+.+++..++.|++.+||...-. .++.+...++.++++|+.|...+.
T Consensus 93 ypd~vv~~~v~~A~~~Gvd~irif~~ln--------------d~~n~~~~i~~ak~~G~~v~~~i~ 144 (592)
T PRK09282 93 YPDDVVEKFVEKAAENGIDIFRIFDALN--------------DVRNMEVAIKAAKKAGAHVQGTIS 144 (592)
T ss_pred ccchhhHHHHHHHHHCCCCEEEEEEecC--------------hHHHHHHHHHHHHHcCCEEEEEEE
Confidence 3444568899999999999999965321 135688889999999999887764
No 354
>PRK08508 biotin synthase; Provisional
Probab=21.12 E-value=8.5e+02 Score=24.47 Aligned_cols=127 Identities=13% Similarity=0.058 Sum_probs=69.3
Q ss_pred cCCHHHHHHHHHcCCCEEEEccccccccCCCCCCCCC-cChHHHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCCCCCCC
Q 009560 225 FITIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFI-GGSLEALDNALSWAEAYNIKCIIDLHAAPGSQNGMEHSASRD 303 (532)
Q Consensus 225 ~ite~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~-~~~l~~Ld~~v~~a~k~Gi~VILDlH~~pGsqn~~~~sg~~~ 303 (532)
..+++.++.|+++|++.+=+.+.- . + .-..... ...++..-+.++.|++.||.|--.+- +|-
T Consensus 99 ~~~~e~l~~Lk~aGld~~~~~lEt--~-~-~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I--~Gl----------- 161 (279)
T PRK08508 99 TASVEQLKELKKAGIFSYNHNLET--S-K-EFFPKICTTHTWEERFQTCENAKEAGLGLCSGGI--FGL----------- 161 (279)
T ss_pred CCCHHHHHHHHHcCCCEEcccccc--h-H-HHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeE--Eec-----------
Confidence 457999999999999987654321 0 1 0001111 23567777788899999986532211 220
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCC-CcccHHHHHHHHHHHHHhhCCCcEEEEeCC
Q 009560 304 GTTDWPASDYISQTLDVIDFLASRYAKHPALLGIELLNEPSAATV-PLDILVPYYKQGYQIVRKYSPTAYVIVCQR 378 (532)
Q Consensus 304 g~~~W~~~~~~~~~~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~-~~~~l~~~~~~~~~aIR~~~~~~~Viv~~~ 378 (532)
.+..+..++.+..|.+ ...+ -+-+..++.-.+.+. ....-...+-+++...|-.-|+..|-+.++
T Consensus 162 -------GEt~ed~~~~l~~lr~-L~~~--svpl~~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~lp~~~i~~~~g 227 (279)
T PRK08508 162 -------GESWEDRISFLKSLAS-LSPH--STPINFFIPNPALPLKAPTLSADEALEIVRLAKEALPNARLMVAGG 227 (279)
T ss_pred -------CCCHHHHHHHHHHHHc-CCCC--EEeeCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecCC
Confidence 1334555666666643 3322 122334333111100 111223345678888899999988877654
No 355
>PF00932 LTD: Lamin Tail Domain; InterPro: IPR001322 Intermediate filaments (IF) are primordial components of the cytoskeleton and the nuclear envelope []. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups, type I: acidic cytokeratins, type II: basic cytokeratins, type III: vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin, type IV: neurofilaments L, H and M, alpha-internexin and nestin, and type V: nuclear lamins A, B1, B2 and C. The lamins are components of the nuclear lamina, a fibrous layer on the nucleoplasmic side of the inner nuclear membrane that may provide a framework for the nuclear envelope and may interact with chromatin. All IF proteins are structurally similar in that they consist of a central rod domain arranged in coiled-coil alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. The C-terminal domain has been charcterised for the lamins.; PDB: 3UMN_A 2KPW_A 3JT0_A 2LLL_A 1UFG_A 3GEF_D 1IFR_A 1IVT_A.
Probab=21.08 E-value=2.1e+02 Score=24.33 Aligned_cols=72 Identities=14% Similarity=0.199 Sum_probs=32.6
Q ss_pred eeEecCCceeeecccCccccccccCCcccccceEEEEEecCCeEEEEecCCCceeEEcCCCCCCcceEEEEEecCCeEEE
Q 009560 36 RGVNLGGWLVIEGWIKPSLFDGILNGDMLDGTQVQIKSVTLEKYVCAESGGGTDVSVTRDVASSWETFTLWRVSESEFQF 115 (532)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~s~~~~~yv~ae~gg~~~l~anr~~~~~wE~f~~~~~~~~~~~l 115 (532)
+.|||+||.+.-. -.-+.-.+...+..|..+.+.+... ......+...+.. |. |..+++++.|
T Consensus 36 ~~vdL~gw~L~~~---~~~~~~~~~~~l~pg~~~~v~~~~~-------~~~~~~~~~~~~~------~~-~~~~gd~i~L 98 (116)
T PF00932_consen 36 STVDLSGWKLVDS---NNTYTFPPGTTLAPGEYVVVWTGGG-------NNPPFDLYWGSST------FG-LNNSGDTITL 98 (116)
T ss_dssp S-EEGTT-EEEEE---EEEEE--TT-EE-TTEEEEEEECCS-------SBTTTEEEETTS-------SS-SSSSEEEEEE
T ss_pred CcEeeccEEEEEC---CccEEccCCcCcCCCCEEEEEECCC-------CCCCcceeeeccC------cc-EeCCCeEEEE
Confidence 7899999998766 2222211223333666666554221 1111223333322 22 4444677888
Q ss_pred EecCCeEEE
Q 009560 116 RTSQGQFLT 124 (532)
Q Consensus 116 r~~~~~~v~ 124 (532)
+...|+.|.
T Consensus 99 ~d~~G~~vd 107 (116)
T PF00932_consen 99 YDPSGEVVD 107 (116)
T ss_dssp E-TTS-EEE
T ss_pred ECCCCCEEE
Confidence 876677664
No 356
>PF10035 DUF2179: Uncharacterized protein conserved in bacteria (DUF2179); InterPro: IPR019264 This entry, found mostly in hypothetical bacterial proteins, has no known function. ; PDB: 3HLU_B.
Probab=21.03 E-value=92 Score=23.08 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhCCCcEEEEeC
Q 009560 357 YKQGYQIVRKYSPTAYVIVCQ 377 (532)
Q Consensus 357 ~~~~~~aIR~~~~~~~Viv~~ 377 (532)
+.++.+.|++.||++.|++.+
T Consensus 29 ~~~l~~~I~~~Dp~AFi~v~~ 49 (55)
T PF10035_consen 29 LPKLKKIIKEIDPKAFISVSD 49 (55)
T ss_dssp HHHHHHHHHCC-TT-EEEE--
T ss_pred HHHHHHHHHHhCCCEEEEEEc
Confidence 367889999999999998864
No 357
>PRK10673 acyl-CoA esterase; Provisional
Probab=20.87 E-value=3.4e+02 Score=25.84 Aligned_cols=61 Identities=8% Similarity=0.140 Sum_probs=35.6
Q ss_pred HHHHHHHhCCCCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEeCCCCC
Q 009560 321 IDFLASRYAKHPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQRIGN 381 (532)
Q Consensus 321 w~~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~~~~~ 381 (532)
|..++.++++.-.++.+|+-.==.........+..+.+.+...|.+.+....++++-.+|+
T Consensus 32 ~~~~~~~l~~~~~vi~~D~~G~G~s~~~~~~~~~~~~~d~~~~l~~l~~~~~~lvGhS~Gg 92 (255)
T PRK10673 32 LGVLARDLVNDHDIIQVDMRNHGLSPRDPVMNYPAMAQDLLDTLDALQIEKATFIGHSMGG 92 (255)
T ss_pred HHHHHHHHhhCCeEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEECHHH
Confidence 3444444444446787887431000011223577788888888888887777777755553
No 358
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=20.84 E-value=1.1e+02 Score=27.85 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=21.3
Q ss_pred ChhhHHHHHHhhccccCCHHHHHHHHHcCCCEEEEcccccc
Q 009560 210 GHERAKEVLKRHRNTFITIEDFNFLYRHGINTVRIPVGWWI 250 (532)
Q Consensus 210 G~~~a~~~~~~hw~t~ite~d~~~la~~G~N~VRIpv~ww~ 250 (532)
.|+.|.+++++- -+.|++.|+++.|-|++|.-
T Consensus 89 ~P~~A~~iL~~l---------e~~L~~~g~eV~raPFGwyK 120 (138)
T PF08915_consen 89 SPDVAVEILKKL---------EERLKSRGFEVYRAPFGWYK 120 (138)
T ss_dssp -HHHHHHHHHHH---------HHHHHHTT-EEEE--TTEEE
T ss_pred ChHHHHHHHHHH---------HHHHHhCCCeEEEeCCccce
Confidence 356777777665 35568999999999999953
No 359
>KOG2511 consensus Nicotinic acid phosphoribosyltransferase [Coenzyme transport and metabolism]
Probab=20.68 E-value=90 Score=32.59 Aligned_cols=48 Identities=21% Similarity=0.328 Sum_probs=35.9
Q ss_pred CCCCcceeeecccCCCCccceeecccChhhHHHHHHhhccccCCHHHHHHHHH
Q 009560 184 DDNAATFEMAIVANNLHGDYQLANGYGHERAKEVLKRHRNTFITIEDFNFLYR 236 (532)
Q Consensus 184 ~~~ps~f~~~~~~~~~~~e~~l~~~~G~~~a~~~~~~hw~t~ite~d~~~la~ 236 (532)
-+++++|+.+....+++++|+.-+++ +..-+++... ..|+++++.+++
T Consensus 28 ~de~~vy~~~~R~npf~g~~~~f~~L--ee~irfl~N~---~lt~eei~~lkk 75 (420)
T KOG2511|consen 28 PDERVVYKYTNRSNPFGGNYEAFNWL--EEQIRFLANL---KLTDEEIDYLKK 75 (420)
T ss_pred CCCceEEEeeecCCCCCchHHHHHHH--HHHHHHHhhc---CCCHHHHHHHHH
Confidence 46689999999888999999987776 4455555544 467788877765
No 360
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=20.61 E-value=3e+02 Score=27.79 Aligned_cols=56 Identities=14% Similarity=0.239 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCC-cChHHHHHHHHHHHHHcCCE-EEEEc
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFI-GGSLEALDNALSWAEAYNIK-CIIDL 286 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~-~~~l~~Ld~~v~~a~k~Gi~-VILDl 286 (532)
++.++.+++.|++.|.|.+.- .+++...... .+.++.+-+.++.+.+.|+. |-+.+
T Consensus 98 ~~~~~~l~~~g~~~v~iSld~---~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~ 155 (302)
T TIGR02668 98 EKLAKKLKEAGLDRVNVSLDT---LDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNM 155 (302)
T ss_pred HHHHHHHHHCCCCEEEEEecC---CCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEE
Confidence 466788999999999988742 1221111111 24688888899999999986 55543
No 361
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=20.34 E-value=8e+02 Score=26.54 Aligned_cols=76 Identities=12% Similarity=-0.039 Sum_probs=35.5
Q ss_pred EEEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCC----cEEEEe-CCCCCCCchhhhhccCCCCcEEEEeeecccCCC
Q 009560 335 LGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPT----AYVIVC-QRIGNADPLELYQANIGLHNIVVDLHYYNLFDT 409 (532)
Q Consensus 335 ~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~----~~Viv~-~~~~~~~~~~~~~~~~~~~nvv~s~H~Y~~f~~ 409 (532)
+++|-.++-.........-.+-+.+++..+|+..++ ..+|+| ++....+..+...+....+-..+.++.|.|+..
T Consensus 261 IglESgs~~vLk~m~r~~~~~~~~~~i~~lr~~~~~i~i~t~~IvGfPgET~edf~~tl~fi~e~~~d~~~~f~ysP~pG 340 (440)
T PRK14862 261 IPFQHASPRVLKRMKRPASVEKTLERIKKWREICPDLTIRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKYSPVEG 340 (440)
T ss_pred cccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHCCCceecccEEEECCCCCHHHHHHHHHHHHHcCCCeeeeEeecCCCC
Confidence 456666553221111122223345667777776554 345555 232111223333333233334566788888744
Q ss_pred c
Q 009560 410 F 410 (532)
Q Consensus 410 ~ 410 (532)
+
T Consensus 341 T 341 (440)
T PRK14862 341 A 341 (440)
T ss_pred C
Confidence 3
No 362
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=20.33 E-value=7.9e+02 Score=23.78 Aligned_cols=47 Identities=6% Similarity=0.053 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEc
Q 009560 228 IEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDL 286 (532)
Q Consensus 228 e~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDl 286 (532)
|=--+.|++.|++.|=|.= .+.. +.++. +.+-++.|.++||.+||..
T Consensus 71 evS~~mLkd~G~~~viiGH-----SERR----f~Etd---i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 71 EISAEMLKDIGAKGTLINH-----SERR----MKLAD---IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred cCCHHHHHHcCCCEEEECc-----ccCC----CCccH---HHHHHHHHHHCCCEEEEEE
Confidence 4556789999999987632 2221 33333 7888899999999999988
No 363
>PRK00865 glutamate racemase; Provisional
Probab=20.29 E-value=3.2e+02 Score=27.25 Aligned_cols=59 Identities=12% Similarity=0.106 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhhCCCcEEEEeC
Q 009560 318 LDVIDFLASRYAKHPALLGIELLNEPSAATVPLDILVPYYKQGYQIVRKYSPTAYVIVCQ 377 (532)
Q Consensus 318 ~~~w~~la~ry~~~p~v~g~EL~NEP~~~~~~~~~l~~~~~~~~~aIR~~~~~~~Viv~~ 377 (532)
..+++.+.+++.+..-+..-|..|=|.+. -+.+.+.++..++++.+.+.+.+.+||-++
T Consensus 18 Ltvl~~i~~~lp~~~~iY~~D~~~~PYG~-ks~~~i~~~~~~~~~~L~~~g~d~iVIaCN 76 (261)
T PRK00865 18 LTVLREIRRLLPDEHIIYVGDTARFPYGE-KSEEEIRERTLEIVEFLLEYGVKMLVIACN 76 (261)
T ss_pred HHHHHHHHHHCCCCCEEEEecCCCCCCCC-CCHHHHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 57889999999999889989999999986 477889999999999999988888777664
No 364
>PLN02623 pyruvate kinase
Probab=20.26 E-value=95 Score=34.98 Aligned_cols=56 Identities=16% Similarity=0.124 Sum_probs=33.3
Q ss_pred CHHHHHHHHHcCCCEEEEccccccccCCCCCCCCCcChHHHHHHHHHHHHHcCCEEEEEcCCC
Q 009560 227 TIEDFNFLYRHGINTVRIPVGWWIAFDPDPPAPFIGGSLEALDNALSWAEAYNIKCIIDLHAA 289 (532)
Q Consensus 227 te~d~~~la~~G~N~VRIpv~ww~~~~~~~~~~~~~~~l~~Ld~~v~~a~k~Gi~VILDlH~~ 289 (532)
+++.++.|.+.|+|.+||-+++- +. ......++.+.++-+....+.+.+++|+-..
T Consensus 124 s~e~l~~li~aGmnv~RlNfSHg---~~----e~h~~~i~~vr~~~~~~~~~~iaIl~Dl~GP 179 (581)
T PLN02623 124 TREMIWKLAEAGMNVARLNMSHG---DH----ASHQKVIDLVKEYNAQSKDNVIAIMLDTKGP 179 (581)
T ss_pred CHHHHHHHHHcCCCEEEEECCCC---CH----HHHHHHHHHHHHHHHHcCCCceEEEecCCCC
Confidence 37899999999999999988541 10 1111122333332222222568999998653
Done!