Query 009562
Match_columns 532
No_of_seqs 405 out of 1628
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 07:59:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009562.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009562hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wd2_A Ariadne-1 protein homol 99.7 6.1E-19 2.1E-23 135.7 1.3 56 213-272 1-59 (60)
2 1wim_A KIAA0161 protein; ring 99.6 1.2E-16 4E-21 134.6 6.3 88 56-146 3-93 (94)
3 2ct7_A Ring finger protein 31; 99.2 5E-13 1.7E-17 110.6 -1.7 77 128-208 4-84 (86)
4 4ap4_A E3 ubiquitin ligase RNF 99.0 1.5E-11 5.2E-16 108.8 -1.9 116 56-231 5-126 (133)
5 2jmo_A Parkin; IBR, E3 ligase, 99.0 8.6E-12 2.9E-16 101.7 -4.4 65 128-196 5-75 (80)
6 3hcs_A TNF receptor-associated 98.6 2.6E-08 8.9E-13 92.3 6.2 84 55-166 15-98 (170)
7 2egp_A Tripartite motif-contai 98.5 2.6E-08 8.8E-13 80.1 0.5 57 56-117 10-66 (79)
8 2ysj_A Tripartite motif-contai 98.4 2.4E-07 8.1E-12 71.2 5.7 45 56-107 18-62 (63)
9 2ecv_A Tripartite motif-contai 98.4 1.9E-07 6.5E-12 75.7 5.4 56 56-117 17-72 (85)
10 2ysl_A Tripartite motif-contai 98.4 7.5E-08 2.6E-12 76.1 2.7 52 56-116 18-69 (73)
11 1e4u_A Transcriptional repress 98.4 1.5E-07 5.1E-12 76.1 4.3 53 56-117 9-63 (78)
12 3ztg_A E3 ubiquitin-protein li 98.4 1.2E-07 4.2E-12 78.5 3.6 49 56-114 11-60 (92)
13 2ecw_A Tripartite motif-contai 98.4 2.5E-07 8.5E-12 75.0 5.3 56 56-117 17-72 (85)
14 2ecy_A TNF receptor-associated 98.4 1.5E-07 5.2E-12 73.1 3.8 51 56-117 13-63 (66)
15 2ct2_A Tripartite motif protei 98.4 1.2E-07 4E-12 77.7 3.2 60 56-122 13-74 (88)
16 1rmd_A RAG1; V(D)J recombinati 98.4 1.1E-07 3.8E-12 82.4 3.1 84 56-166 21-104 (116)
17 2d8t_A Dactylidin, ring finger 98.4 1.8E-07 6.1E-12 73.8 3.9 54 55-120 12-65 (71)
18 3hct_A TNF receptor-associated 98.4 3.9E-07 1.3E-11 79.3 5.9 84 55-166 15-98 (118)
19 3lrq_A E3 ubiquitin-protein li 98.3 1.9E-07 6.5E-12 79.0 3.0 51 57-118 21-72 (100)
20 2yu4_A E3 SUMO-protein ligase 98.3 3.2E-07 1.1E-11 76.7 4.2 57 56-116 5-63 (94)
21 1t1h_A Gspef-atpub14, armadill 98.3 3.4E-07 1.1E-11 73.4 3.7 51 56-117 6-56 (78)
22 2yur_A Retinoblastoma-binding 98.3 5.4E-07 1.8E-11 71.7 4.9 50 55-114 12-62 (74)
23 3knv_A TNF receptor-associated 98.3 3.8E-07 1.3E-11 82.1 4.3 48 56-114 29-76 (141)
24 3l11_A E3 ubiquitin-protein li 98.3 2.9E-07 9.8E-12 79.6 3.2 52 54-116 11-62 (115)
25 2csy_A Zinc finger protein 183 98.3 7.4E-07 2.5E-11 72.1 5.2 48 56-115 13-60 (81)
26 1jm7_A BRCA1, breast cancer ty 98.3 3.8E-07 1.3E-11 78.2 3.6 54 57-119 20-73 (112)
27 2djb_A Polycomb group ring fin 98.3 1E-06 3.5E-11 69.6 5.6 50 56-117 13-63 (72)
28 3fl2_A E3 ubiquitin-protein li 98.3 4.1E-07 1.4E-11 79.8 3.5 50 56-116 50-99 (124)
29 3ng2_A RNF4, snurf, ring finge 98.2 1.6E-07 5.4E-12 73.8 0.4 53 56-118 8-65 (71)
30 2ecm_A Ring finger and CHY zin 98.2 5.5E-07 1.9E-11 67.0 3.3 49 57-115 4-54 (55)
31 2ecj_A Tripartite motif-contai 98.2 9.6E-07 3.3E-11 66.3 4.2 45 56-107 13-57 (58)
32 1g25_A CDK-activating kinase a 98.2 2E-07 6.7E-12 72.2 0.3 53 58-119 3-58 (65)
33 2ea6_A Ring finger protein 4; 98.2 9.3E-07 3.2E-11 68.7 4.1 50 56-115 13-67 (69)
34 4ayc_A E3 ubiquitin-protein li 98.2 5.4E-07 1.9E-11 80.6 2.9 47 57-115 52-98 (138)
35 2kr4_A Ubiquitin conjugation f 98.2 1.2E-06 4.1E-11 71.8 4.7 50 56-117 12-61 (85)
36 2y43_A E3 ubiquitin-protein li 98.2 5.6E-07 1.9E-11 75.7 2.6 49 57-117 21-70 (99)
37 2xeu_A Ring finger protein 4; 98.2 2.4E-07 8E-12 71.1 0.1 52 57-118 2-58 (64)
38 2kiz_A E3 ubiquitin-protein li 98.1 2.8E-06 9.5E-11 66.3 5.5 50 56-115 12-62 (69)
39 1z6u_A NP95-like ring finger p 98.1 1.3E-06 4.5E-11 79.4 3.5 50 57-117 77-126 (150)
40 2ckl_A Polycomb group ring fin 98.1 1.5E-06 5.1E-11 74.2 3.4 48 56-115 13-61 (108)
41 2kre_A Ubiquitin conjugation f 98.0 2.3E-06 7.9E-11 72.4 2.6 49 56-116 27-75 (100)
42 1wgm_A Ubiquitin conjugation f 98.0 3.8E-06 1.3E-10 70.8 3.8 50 56-117 20-70 (98)
43 3htk_C E3 SUMO-protein ligase 98.0 4.2E-06 1.4E-10 82.1 4.4 55 55-117 178-233 (267)
44 1bor_A Transcription factor PM 98.0 1.1E-06 3.8E-11 66.1 0.2 44 57-115 5-48 (56)
45 1iym_A EL5; ring-H2 finger, ub 98.0 3E-06 1E-10 63.0 2.4 48 57-114 4-53 (55)
46 2ect_A Ring finger protein 126 97.9 4.6E-06 1.6E-10 66.7 3.4 52 56-117 13-65 (78)
47 2ep4_A Ring finger protein 24; 97.9 8E-06 2.7E-10 64.6 4.7 50 56-115 13-63 (74)
48 1v87_A Deltex protein 2; ring- 97.9 6.7E-06 2.3E-10 70.7 4.4 53 58-115 25-93 (114)
49 1chc_A Equine herpes virus-1 r 97.9 4.7E-06 1.6E-10 64.7 3.0 48 57-115 4-51 (68)
50 2l0b_A E3 ubiquitin-protein li 97.9 7.2E-06 2.5E-10 67.9 4.1 51 56-116 38-89 (91)
51 1jm7_B BARD1, BRCA1-associated 97.9 2E-06 6.7E-11 74.7 0.6 46 57-116 21-67 (117)
52 2ckl_B Ubiquitin ligase protei 97.9 5.3E-06 1.8E-10 76.3 3.4 49 56-115 52-101 (165)
53 1x4j_A Ring finger protein 38; 97.9 4.9E-06 1.7E-10 66.1 2.7 50 56-115 21-71 (75)
54 2ecn_A Ring finger protein 141 97.9 4.2E-06 1.4E-10 65.5 1.7 47 56-115 13-59 (70)
55 2c2l_A CHIP, carboxy terminus 97.8 6E-06 2E-10 81.7 3.2 51 56-117 206-256 (281)
56 2f42_A STIP1 homology and U-bo 97.7 1.5E-05 5.1E-10 74.4 3.6 51 56-117 104-154 (179)
57 4ic3_A E3 ubiquitin-protein li 97.7 1.1E-05 3.8E-10 64.1 2.0 43 57-115 23-66 (74)
58 2ecg_A Baculoviral IAP repeat- 97.6 2.3E-05 8E-10 62.3 2.5 43 57-115 24-67 (75)
59 2vje_A E3 ubiquitin-protein li 97.4 5.4E-05 1.9E-09 58.4 2.6 49 55-115 5-56 (64)
60 2ecl_A Ring-box protein 2; RNF 97.4 7.6E-05 2.6E-09 60.3 3.1 48 58-115 15-75 (81)
61 2y1n_A E3 ubiquitin-protein li 97.3 0.00011 3.6E-09 76.4 4.1 47 59-116 333-379 (389)
62 4ap4_A E3 ubiquitin ligase RNF 97.3 6.6E-05 2.3E-09 65.6 2.1 55 55-119 69-128 (133)
63 2yho_A E3 ubiquitin-protein li 97.3 6.2E-05 2.1E-09 60.7 1.5 43 58-116 18-61 (79)
64 2d8s_A Cellular modulator of i 97.3 0.0002 6.8E-09 57.9 4.5 52 56-115 13-69 (80)
65 2ea5_A Cell growth regulator w 97.2 0.0002 6.8E-09 55.9 3.7 44 56-115 13-57 (68)
66 2vje_B MDM4 protein; proto-onc 97.2 0.00017 5.7E-09 55.4 2.9 48 56-115 5-55 (63)
67 2ct7_A Ring finger protein 31; 97.1 0.00022 7.5E-09 58.4 3.0 49 218-271 25-74 (86)
68 3dpl_R Ring-box protein 1; ubi 97.0 0.00039 1.3E-08 59.2 3.2 49 57-115 36-100 (106)
69 3t6p_A Baculoviral IAP repeat- 96.5 0.00048 1.6E-08 70.8 0.8 43 57-115 294-337 (345)
70 2jmo_A Parkin; IBR, E3 ligase, 96.5 0.0012 4.2E-08 53.2 2.5 37 218-254 25-69 (80)
71 4a0k_B E3 ubiquitin-protein li 96.3 0.00069 2.4E-08 58.7 0.0 48 58-115 48-111 (117)
72 2bay_A PRE-mRNA splicing facto 96.0 0.003 1E-07 48.1 2.3 48 58-117 3-51 (61)
73 3k1l_B Fancl; UBC, ring, RWD, 95.8 0.0061 2.1E-07 61.9 4.4 60 56-117 306-374 (381)
74 2ct0_A Non-SMC element 1 homol 95.5 0.0077 2.6E-07 47.7 2.9 50 57-115 14-63 (74)
75 2jun_A Midline-1; B-BOX, TRIM, 93.8 0.0099 3.4E-07 49.5 -0.3 68 170-251 17-87 (101)
76 1v92_A NSFL1 cofactor P47; 3-h 92.4 0.093 3.2E-06 37.1 3.1 31 2-32 14-44 (46)
77 3vk6_A E3 ubiquitin-protein li 92.4 0.091 3.1E-06 43.7 3.4 44 60-114 3-47 (101)
78 1vyx_A ORF K3, K3RING; zinc-bi 92.3 0.12 4.1E-06 39.0 3.9 49 57-115 5-58 (60)
79 2jun_A Midline-1; B-BOX, TRIM, 92.1 0.064 2.2E-06 44.5 2.3 32 58-90 3-36 (101)
80 2cs3_A Protein C14ORF4, MY039 91.6 0.24 8.4E-06 39.2 4.9 67 55-124 12-88 (93)
81 1wd2_A Ariadne-1 protein homol 89.3 0.15 5.1E-06 38.5 1.8 37 148-188 5-44 (60)
82 2dal_A Protein KIAA0794; FAS a 88.4 0.28 9.5E-06 37.2 2.8 32 1-32 23-54 (62)
83 2dam_A ETEA protein; KIAA0887, 85.0 0.56 1.9E-05 36.1 2.9 31 2-32 27-58 (67)
84 1g25_A CDK-activating kinase a 83.9 0.36 1.2E-05 36.3 1.4 32 175-231 25-56 (65)
85 3vk6_A E3 ubiquitin-protein li 80.1 0.92 3.1E-05 37.7 2.5 48 151-232 3-51 (101)
86 2dzl_A Protein FAM100B; UBA-li 79.9 0.95 3.2E-05 34.7 2.4 31 2-32 26-56 (66)
87 2csv_A Tripartite motif protei 79.7 0.63 2.2E-05 36.0 1.4 38 219-271 19-57 (72)
88 2did_A Tripartite motif protei 79.3 0.89 3E-05 32.9 2.0 27 219-252 9-36 (53)
89 4ayc_A E3 ubiquitin-protein li 78.3 0.55 1.9E-05 41.1 0.7 32 172-229 67-98 (138)
90 3nw0_A Non-structural maintena 78.3 1.1 3.7E-05 43.3 2.9 50 57-116 179-229 (238)
91 1fre_A Nuclear factor XNF7; zi 77.4 1.4 4.7E-05 30.1 2.5 27 219-252 4-31 (42)
92 2ecy_A TNF receptor-associated 76.7 0.67 2.3E-05 34.8 0.7 32 175-231 32-63 (66)
93 1x4j_A Ring finger protein 38; 76.4 1.2 4E-05 34.4 2.1 33 175-233 43-75 (75)
94 2yrg_A Tripartite motif-contai 76.3 1.1 3.9E-05 33.2 1.9 27 219-252 15-42 (59)
95 1e4u_A Transcriptional repress 75.8 0.49 1.7E-05 37.5 -0.3 51 150-230 12-62 (78)
96 2yvr_A Transcription intermedi 75.2 1.1 3.6E-05 32.0 1.4 27 219-252 7-35 (50)
97 2jrp_A Putative cytoplasmic pr 74.5 2.2 7.5E-05 34.0 3.2 33 219-253 3-41 (81)
98 1jm7_B BARD1, BRCA1-associated 74.2 1.5 5.1E-05 37.1 2.3 31 150-188 23-53 (117)
99 1pft_A TFIIB, PFTFIIBN; N-term 71.9 2.5 8.7E-05 30.1 2.7 29 217-245 4-34 (50)
100 3ddt_A E3 ubiquitin-protein li 71.8 1.4 4.8E-05 31.1 1.4 26 219-251 7-34 (48)
101 3lrq_A E3 ubiquitin-protein li 71.6 1 3.6E-05 37.0 0.7 30 219-253 23-53 (100)
102 3e21_A HFAF1, FAS-associated f 70.9 1.1 3.8E-05 31.7 0.6 29 2-30 14-43 (45)
103 1bor_A Transcription factor PM 70.9 2.5 8.4E-05 30.7 2.6 27 175-230 23-49 (56)
104 1vq8_Z 50S ribosomal protein L 70.1 2.1 7E-05 34.4 2.1 36 217-255 26-62 (83)
105 2ysj_A Tripartite motif-contai 69.5 1.3 4.3E-05 32.8 0.7 30 219-253 21-50 (63)
106 2dja_A Midline-2; tripartite m 69.4 2.1 7.3E-05 33.9 2.1 39 219-271 19-59 (84)
107 1wj7_A Hypothetical protein (R 69.3 3.1 0.00011 34.8 3.0 32 1-32 47-78 (104)
108 2k4x_A 30S ribosomal protein S 69.3 2.2 7.5E-05 31.5 1.9 29 217-245 17-46 (55)
109 1z96_A DNA-damage, UBA-domain 68.8 2.9 0.0001 28.1 2.4 26 4-29 14-39 (40)
110 2jr6_A UPF0434 protein NMA0874 68.4 3.2 0.00011 32.0 2.8 31 218-248 8-39 (68)
111 1wfh_A Zinc finger (AN1-like) 67.9 2.7 9.2E-05 32.0 2.2 27 218-248 15-41 (64)
112 2ysl_A Tripartite motif-contai 67.0 1.7 5.6E-05 33.1 0.9 31 219-254 21-51 (73)
113 3j20_Y 30S ribosomal protein S 65.2 3 0.0001 30.1 1.9 29 216-245 17-47 (50)
114 4ic3_A E3 ubiquitin-protein li 64.8 1.8 6.3E-05 33.4 0.8 26 175-230 41-67 (74)
115 2d8u_A Ubiquitin ligase TRIM63 63.7 2.9 9.9E-05 31.2 1.7 27 219-252 9-37 (64)
116 1wg2_A Zinc finger (AN1-like) 63.5 3.5 0.00012 31.3 2.1 27 218-248 15-41 (64)
117 3ztg_A E3 ubiquitin-protein li 62.8 1.3 4.3E-05 35.6 -0.5 30 219-253 14-44 (92)
118 2ct2_A Tripartite motif protei 62.0 1.8 6.1E-05 34.1 0.2 34 219-253 16-49 (88)
119 3s84_A Apolipoprotein A-IV; fo 61.7 1.2E+02 0.0041 29.4 14.1 51 379-429 168-221 (273)
120 2jne_A Hypothetical protein YF 61.6 5.3 0.00018 32.8 3.0 33 219-253 33-71 (101)
121 2yur_A Retinoblastoma-binding 61.4 2.6 8.9E-05 32.4 1.1 30 219-253 16-46 (74)
122 3fl2_A E3 ubiquitin-protein li 61.0 2.5 8.5E-05 36.0 1.0 30 219-253 53-82 (124)
123 1wfp_A Zinc finger (AN1-like) 60.7 4.1 0.00014 31.8 2.1 28 217-248 24-51 (74)
124 1wfl_A Zinc finger protein 216 60.6 4.3 0.00015 31.7 2.2 26 219-248 26-51 (74)
125 2egm_A Tripartite motif-contai 60.1 2 6.8E-05 31.7 0.2 27 219-252 19-46 (57)
126 2ckl_A Polycomb group ring fin 60.0 2.7 9.3E-05 34.8 1.0 30 219-253 16-46 (108)
127 2d8t_A Dactylidin, ring finger 59.8 2.4 8.4E-05 32.1 0.7 31 219-254 16-46 (71)
128 1wff_A Riken cDNA 2810002D23 p 59.7 4.6 0.00016 32.5 2.2 28 218-248 25-52 (85)
129 3ng2_A RNF4, snurf, ring finge 59.7 2.2 7.4E-05 32.1 0.3 35 219-253 11-47 (71)
130 2ckl_B Ubiquitin ligase protei 59.6 2.8 9.7E-05 37.5 1.2 30 219-253 55-85 (165)
131 1t1h_A Gspef-atpub14, armadill 58.5 3.4 0.00012 31.8 1.3 31 219-254 9-39 (78)
132 3hcs_A TNF receptor-associated 58.4 6.6 0.00022 35.2 3.4 64 101-186 81-145 (170)
133 2egp_A Tripartite motif-contai 58.1 3.1 0.00011 32.0 1.0 32 219-255 13-44 (79)
134 2d8v_A Zinc finger FYVE domain 57.5 4.6 0.00016 30.8 1.8 34 56-92 6-40 (67)
135 3o27_A Putative uncharacterize 57.2 2.6 8.8E-05 32.1 0.4 23 508-530 13-35 (68)
136 2djb_A Polycomb group ring fin 56.9 2.7 9.4E-05 31.9 0.5 30 219-253 16-46 (72)
137 1iym_A EL5; ring-H2 finger, ub 56.8 3.3 0.00011 29.5 0.9 35 219-255 6-41 (55)
138 1v87_A Deltex protein 2; ring- 56.5 3.1 0.00011 34.6 0.8 38 175-233 60-97 (114)
139 1ify_A HHR23A, UV excision rep 56.1 11 0.00037 26.8 3.5 28 4-31 18-45 (49)
140 2xeu_A Ring finger protein 4; 55.5 3 0.0001 30.5 0.5 35 219-253 4-40 (64)
141 2g3q_A Protein YBL047C; endocy 55.4 14 0.00047 25.3 3.9 28 4-31 14-41 (43)
142 3l11_A E3 ubiquitin-protein li 54.4 6.4 0.00022 32.8 2.5 31 219-254 16-46 (115)
143 2kiz_A E3 ubiquitin-protein li 54.3 3.8 0.00013 30.7 0.9 33 219-253 15-47 (69)
144 2ecw_A Tripartite motif-contai 54.3 3.3 0.00011 32.1 0.6 30 219-253 20-49 (85)
145 2y43_A E3 ubiquitin-protein li 54.2 3.4 0.00012 33.5 0.7 31 219-254 23-54 (99)
146 2ect_A Ring finger protein 126 54.2 6.2 0.00021 30.2 2.2 34 219-254 16-49 (78)
147 2ecn_A Ring finger protein 141 53.9 3.7 0.00012 30.9 0.8 30 219-254 16-45 (70)
148 2di0_A Activating signal coint 53.9 14 0.00049 28.6 4.1 28 5-32 26-53 (71)
149 2csy_A Zinc finger protein 183 53.8 3.9 0.00013 31.8 0.9 30 219-253 16-45 (81)
150 3knv_A TNF receptor-associated 52.2 3.7 0.00013 36.0 0.6 30 219-253 32-61 (141)
151 2yho_A E3 ubiquitin-protein li 52.1 4.2 0.00015 31.9 0.9 26 175-230 35-61 (79)
152 3ghg_A Fibrinogen alpha chain; 52.1 1.4E+02 0.0049 31.6 12.5 6 264-269 42-47 (562)
153 2ea6_A Ring finger protein 4; 52.0 3.6 0.00012 30.6 0.4 35 219-253 16-52 (69)
154 2ep4_A Ring finger protein 24; 51.0 3.2 0.00011 31.6 0.0 33 219-253 16-48 (74)
155 1m1j_A Fibrinogen alpha subuni 50.9 1.4E+02 0.0048 31.1 12.0 53 374-426 105-159 (491)
156 3qt1_I DNA-directed RNA polyme 50.4 5.3 0.00018 34.9 1.3 30 147-179 22-55 (133)
157 3hct_A TNF receptor-associated 49.7 4.2 0.00014 34.2 0.5 30 219-253 19-48 (118)
158 1rmd_A RAG1; V(D)J recombinati 48.7 4.8 0.00016 33.7 0.7 30 219-253 24-53 (116)
159 2ecv_A Tripartite motif-contai 48.3 4.2 0.00015 31.4 0.3 30 219-253 20-49 (85)
160 2hf1_A Tetraacyldisaccharide-1 48.2 12 0.00042 28.7 2.9 27 219-245 9-36 (68)
161 2js4_A UPF0434 protein BB2007; 47.5 13 0.00045 28.7 3.0 31 218-248 8-39 (70)
162 2c2l_A CHIP, carboxy terminus 47.1 9.5 0.00032 36.6 2.7 15 172-186 222-236 (281)
163 1vg5_A RSGI RUH-014, rhomboid 46.7 19 0.00066 27.9 3.9 28 4-31 39-66 (73)
164 2pk7_A Uncharacterized protein 46.3 14 0.00049 28.4 3.0 27 219-245 9-36 (69)
165 1x4w_A Hypothetical protein FL 46.2 3.2 0.00011 31.8 -0.7 28 218-248 15-44 (67)
166 3lay_A Zinc resistance-associa 45.3 1.6E+02 0.0055 26.6 10.5 70 365-436 67-143 (175)
167 1jm7_A BRCA1, breast cancer ty 45.2 4.4 0.00015 33.4 -0.1 30 219-253 22-51 (112)
168 1z6u_A NP95-like ring finger p 44.7 6.5 0.00022 34.8 1.0 30 219-253 79-108 (150)
169 2y1n_A E3 ubiquitin-protein li 44.6 15 0.00051 37.9 3.8 33 173-230 347-379 (389)
170 3ghg_A Fibrinogen alpha chain; 44.5 98 0.0033 32.9 9.9 65 376-440 106-188 (562)
171 2a01_A Apolipoprotein A-I; fou 44.3 2.1E+02 0.0072 27.0 12.1 66 376-441 165-233 (243)
172 1wji_A Tudor domain containing 43.3 25 0.00084 26.4 3.9 29 4-32 19-47 (63)
173 2knz_A Ubiquilin-4; cytoplasm, 42.6 30 0.001 24.9 4.1 28 4-31 21-49 (53)
174 3nyb_B Protein AIR2; polya RNA 42.0 20 0.0007 28.5 3.4 59 178-270 5-65 (83)
175 2l0b_A E3 ubiquitin-protein li 41.0 4.7 0.00016 32.3 -0.5 34 219-254 41-74 (91)
176 1veg_A NEDD8 ultimate buster-1 39.4 27 0.00093 27.8 3.8 28 4-31 39-66 (83)
177 3t7l_A Zinc finger FYVE domain 39.4 21 0.00073 28.7 3.2 37 55-91 17-55 (90)
178 2jny_A Uncharacterized BCR; st 39.0 21 0.00071 27.3 2.9 31 218-248 10-41 (67)
179 3t6p_A Baculoviral IAP repeat- 38.7 14 0.00047 37.5 2.4 26 175-230 312-338 (345)
180 2ecl_A Ring-box protein 2; RNF 38.4 12 0.0004 29.2 1.5 24 232-255 39-62 (81)
181 3h0g_I DNA-directed RNA polyme 38.1 23 0.00077 29.8 3.3 28 218-245 4-36 (113)
182 1wiv_A UBP14, ubiquitin-specif 37.9 33 0.0011 26.5 4.0 29 4-32 39-67 (73)
183 1weo_A Cellulose synthase, cat 37.9 43 0.0015 27.0 4.7 49 57-114 15-68 (93)
184 2dak_A Ubiquitin carboxyl-term 37.0 31 0.0011 25.7 3.6 28 4-31 19-46 (63)
185 1deq_A Fibrinogen (alpha chain 36.6 2.5E+02 0.0087 28.5 11.2 13 429-441 188-200 (390)
186 2ko5_A Ring finger protein Z; 35.4 11 0.00039 30.7 0.9 47 57-117 27-74 (99)
187 2lli_A Protein AIR2; RNA surve 33.3 33 0.0011 29.0 3.7 21 176-196 20-41 (124)
188 3qt1_I DNA-directed RNA polyme 32.9 18 0.00063 31.4 1.9 29 217-245 23-56 (133)
189 1twf_L ABC10-alpha, DNA-direct 32.5 12 0.0004 28.9 0.6 24 219-243 29-53 (70)
190 3bq3_A Defective in cullin ned 32.2 20 0.0007 35.0 2.4 32 1-32 23-54 (270)
191 2kpi_A Uncharacterized protein 31.5 36 0.0012 24.9 3.0 25 219-245 11-38 (56)
192 4a0k_B E3 ubiquitin-protein li 31.3 10 0.00034 32.3 0.0 25 231-255 74-98 (117)
193 1joc_A EEA1, early endosomal a 31.3 21 0.00073 30.6 2.1 36 55-90 66-103 (125)
194 1twf_I B12.6, DNA-directed RNA 31.0 26 0.00088 29.9 2.5 28 218-245 4-36 (122)
195 2xzm_9 RPS31E; ribosome, trans 31.0 26 0.00089 32.4 2.7 29 217-246 112-142 (189)
196 2lli_A Protein AIR2; RNA surve 30.9 46 0.0016 28.1 4.2 18 179-196 43-60 (124)
197 2jy5_A Ubiquilin-1; UBA, alter 30.8 44 0.0015 23.9 3.4 28 4-31 22-50 (52)
198 1weo_A Cellulose synthase, cat 30.5 24 0.00083 28.5 2.1 53 157-234 21-74 (93)
199 1y02_A CARP2, FYVE-ring finger 30.4 17 0.00057 31.1 1.2 38 54-91 15-54 (120)
200 1deq_A Fibrinogen (alpha chain 30.3 3E+02 0.01 27.9 10.5 29 373-401 106-134 (390)
201 1z2q_A LM5-1; membrane protein 29.5 23 0.00079 28.0 1.9 36 55-90 18-55 (84)
202 3m7n_A Putative uncharacterize 29.5 26 0.00089 31.9 2.5 24 219-244 141-165 (179)
203 2lbm_A Transcriptional regulat 28.7 1.1E+02 0.0039 26.7 6.4 48 57-112 62-116 (142)
204 2cpw_A CBL-interacting protein 28.6 55 0.0019 24.5 3.8 28 4-31 29-57 (64)
205 2yw8_A RUN and FYVE domain-con 28.6 22 0.00077 27.9 1.6 35 56-90 17-53 (82)
206 1dv0_A DNA repair protein HHR2 28.4 28 0.00097 24.4 1.9 29 3-31 13-41 (47)
207 2zet_C Melanophilin; complex, 27.6 41 0.0014 29.9 3.3 41 218-259 68-109 (153)
208 1odh_A MGCM1; transcription fa 27.5 40 0.0014 30.1 3.2 19 219-243 111-131 (174)
209 2dkl_A Trinucleotide repeat co 27.5 56 0.0019 26.0 3.8 29 4-32 31-59 (85)
210 3htk_C E3 SUMO-protein ligase 26.9 24 0.00082 34.4 1.8 30 219-253 182-212 (267)
211 3mjh_B Early endosome antigen 26.3 17 0.00058 24.0 0.4 14 56-69 3-16 (34)
212 1joc_A EEA1, early endosomal a 26.2 44 0.0015 28.5 3.2 33 218-252 69-102 (125)
213 4esj_A Type-2 restriction enzy 26.1 44 0.0015 31.9 3.4 35 210-245 27-66 (257)
214 1ee8_A MUTM (FPG) protein; bet 25.9 32 0.0011 33.4 2.5 24 219-242 236-262 (266)
215 3dpl_R Ring-box protein 1; ubi 25.8 20 0.00069 29.7 0.9 24 232-255 64-87 (106)
216 3iv1_A Tumor susceptibility ge 25.7 2.4E+02 0.0082 22.1 9.6 20 378-397 51-70 (78)
217 2dai_A Ubadc1, ubiquitin assoc 25.7 63 0.0021 25.6 3.8 29 4-32 39-67 (83)
218 1wii_A Hypothetical UPF0222 pr 25.7 36 0.0012 27.2 2.3 27 219-245 24-57 (85)
219 2xzf_A Formamidopyrimidine-DNA 25.4 28 0.00096 33.9 2.0 24 219-242 243-269 (271)
220 2f42_A STIP1 homology and U-bo 25.3 65 0.0022 29.3 4.4 30 148-186 105-134 (179)
221 1dl6_A Transcription factor II 24.8 51 0.0017 24.2 2.9 26 218-243 11-38 (58)
222 3u5c_f 40S ribosomal protein S 24.7 38 0.0013 30.0 2.6 30 218-247 118-150 (152)
223 1whc_A RSGI RUH-027, UBA/UBX 3 24.6 77 0.0026 23.6 3.9 29 4-32 19-48 (64)
224 3u6p_A Formamidopyrimidine-DNA 24.5 29 0.00098 33.9 1.9 24 219-242 246-272 (273)
225 1wff_A Riken cDNA 2810002D23 p 24.2 67 0.0023 25.7 3.6 28 57-84 24-51 (85)
226 1zbd_B Rabphilin-3A; G protein 24.2 22 0.00075 31.0 0.9 31 57-87 54-87 (134)
227 1k82_A Formamidopyrimidine-DNA 24.1 31 0.001 33.6 2.0 24 219-242 241-267 (268)
228 2akl_A PHNA-like protein PA012 23.6 47 0.0016 28.7 2.8 29 216-245 25-54 (138)
229 1k3x_A Endonuclease VIII; hydr 23.5 31 0.0011 33.4 1.9 24 219-242 235-261 (262)
230 1dvp_A HRS, hepatocyte growth 23.3 48 0.0016 31.0 3.1 32 219-252 162-194 (220)
231 1x4u_A Zinc finger, FYVE domai 22.0 32 0.0011 27.1 1.3 34 56-89 12-47 (84)
232 2zet_C Melanophilin; complex, 22.0 35 0.0012 30.4 1.7 31 57-87 67-100 (153)
233 1vfy_A Phosphatidylinositol-3- 21.5 36 0.0012 26.0 1.6 32 59-90 12-45 (73)
234 2gvi_A Conserved hypothetical 21.4 58 0.002 30.2 3.2 63 23-88 138-201 (204)
235 2dah_A Ubiquilin-3; UBA domain 21.1 67 0.0023 23.2 2.8 28 4-31 19-47 (54)
236 1zbd_B Rabphilin-3A; G protein 21.0 57 0.0019 28.3 2.9 36 217-253 54-90 (134)
237 1z60_A TFIIH basal transcripti 20.8 42 0.0014 24.9 1.7 27 60-86 17-44 (59)
238 2o35_A Hypothetical protein DU 20.7 42 0.0014 27.6 1.8 17 81-97 42-58 (105)
239 3fyb_A Protein of unknown func 20.4 43 0.0015 27.5 1.8 16 81-96 41-56 (104)
No 1
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.72 E-value=6.1e-19 Score=135.73 Aligned_cols=56 Identities=50% Similarity=1.156 Sum_probs=48.2
Q ss_pred HHHcCccCCCCCCcceeecCCCCeeEec---cCceeecccccccCCCCCccccCCccccCccc
Q 009562 213 WITVHTKPCPKCHKPVEKNGGCNLVSCI---CGQAFCWLCGGATGRDHTWSRIAGHSCGRYKE 272 (532)
Q Consensus 213 ~i~~~tK~CPkC~~~IEKn~GCnhMtC~---C~~~FCw~C~~~~~~~H~w~~h~g~~C~~~~~ 272 (532)
||.+++|+||+|+++|||++|||||+|+ |+++|||+|+++|.. |+ ...|+|++|++
T Consensus 1 wi~~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~-~~---~~~y~C~~y~~ 59 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP-HG---SAWYNCNRYNE 59 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG-GG---TSSSSSCSCCC
T ss_pred CccccceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc-CC---CccccCCCccc
Confidence 7888999999999999999999999995 999999999999653 21 12479999974
No 2
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.65 E-value=1.2e-16 Score=134.62 Aligned_cols=88 Identities=20% Similarity=0.479 Sum_probs=79.0
Q ss_pred ccccccccccccccccCceec-CCCCcccHHHHHHHHHhhhccCCcccccccccccccc--cChHHHHHHhcCCChhHHH
Q 009562 56 SSTVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAI--CDEAVVRNLVSKKHPNLAE 132 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~--~~~~~i~~ll~~~~~e~~e 132 (532)
++.++|+||+++++..+++.+ +|||.||.+||+.||..+|.+|...+++||.++|+.. ++++.++.+++ +++++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~---~~~~~ 79 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVA---AEIMQ 79 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSC---HHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCC---HHHHH
Confidence 357899999999886667776 6999999999999999999988766899999999999 99999999998 89999
Q ss_pred HHHHHHHHHhhhcc
Q 009562 133 KFERFLLESFIEDN 146 (532)
Q Consensus 133 ky~~~l~~~~v~~~ 146 (532)
+|.+++++.|++++
T Consensus 80 ky~~~~~~~~v~~~ 93 (94)
T 1wim_A 80 RYKKLQFERSGPSS 93 (94)
T ss_dssp HHHHHHHHSSCSSC
T ss_pred HHHHHHHHhhhccC
Confidence 99999999988754
No 3
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.22 E-value=5e-13 Score=110.63 Aligned_cols=77 Identities=23% Similarity=0.526 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHHHhhhcccccccCCCCCCCCceEEeccccceeeeec-CCCeeecCcccCC---CCCCChhhhHHHHhh
Q 009562 128 PNLAEKFERFLLESFIEDNKMVKWCPSTPHCGNAIRVEEVEVCEVECA-CGAQFCFSCLSEA---HSPCSCSMWDLWAKK 203 (532)
Q Consensus 128 ~e~~eky~~~l~~~~v~~~~~~~~CP~~p~C~~~i~~~~~~~~~v~C~-C~~~fC~~C~~~~---H~p~~C~~~~~w~~~ 203 (532)
++++++|++++++.+|..++.++||| +|+.++..... ...|+|+ |+..||+.|+.+| |.|.+|.++++|..+
T Consensus 4 ~~~~e~y~~~l~e~~v~~~~~~~wCP---~C~~~~~~~~~-~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w~~~ 79 (86)
T 2ct7_A 4 GSSGALFHKKLTEGVLMRDPKFLWCA---QCSFGFIYERE-QLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRM 79 (86)
T ss_dssp CCCCCSSSSCCCCSCCCSCCCEECCS---SSCCCEECCCS-CSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEeECc---CCCchheecCC-CCceEeCCCCCccccccCCchhhcCCCCChHHHHHHHHh
Confidence 67888999999999999999999999 89998876654 4568997 9999999999999 999999999999987
Q ss_pred hhchH
Q 009562 204 CRDES 208 (532)
Q Consensus 204 ~~~e~ 208 (532)
...++
T Consensus 80 n~~~~ 84 (86)
T 2ct7_A 80 NSGPS 84 (86)
T ss_dssp HTCSS
T ss_pred Ccccc
Confidence 65543
No 4
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.02 E-value=1.5e-11 Score=108.84 Aligned_cols=116 Identities=26% Similarity=0.586 Sum_probs=77.2
Q ss_pred ccccccccccccccc-----cCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccChHHHHHHhcCCChhH
Q 009562 56 SSTVMCDICMEEVAG-----DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVRNLVSKKHPNL 130 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~~i~~ll~~~~~e~ 130 (532)
++.++|+||++.+.. ..++.++|||.||.+||..|+... ..||. |+..+....+..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~l~~l~i------ 68 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKRYHPIYI------ 68 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC--------SBCTT--TCCBCTTTCEEECBC------
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC--------CCCCC--CCCcCcccccccccc------
Confidence 356899999999752 112778999999999999998742 48998 988776543322111
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCCCCCceEEecc-ccceeeeecCCCeeecCcccCCCCCCChhhhHHHHhhhhchHH
Q 009562 131 AEKFERFLLESFIEDNKMVKWCPSTPHCGNAIRVEE-VEVCEVECACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESE 209 (532)
Q Consensus 131 ~eky~~~l~~~~v~~~~~~~~CP~~p~C~~~i~~~~-~~~~~v~C~C~~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~ 209 (532)
+.....|| -|...+.... .....+..+||+.||..|...| ..
T Consensus 69 ---------------~~~~~~C~---iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~------------~~------- 111 (133)
T 4ap4_A 69 ---------------GSGTVSCP---ICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDS------------LK------- 111 (133)
T ss_dssp ---------------SSSSCBCT---TTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHH------------HH-------
T ss_pred ---------------CCCCCCCC---CCCCccccccccCcceEeCCCCChhhHHHHHHH------------HH-------
Confidence 22334687 5755443211 1122356689999999996543 21
Q ss_pred HHHHHHcCccCCCCCCcceeec
Q 009562 210 TVNWITVHTKPCPKCHKPVEKN 231 (532)
Q Consensus 210 ~~~~i~~~tK~CPkC~~~IEKn 231 (532)
. .+.||.|+..|+++
T Consensus 112 ------~-~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 112 ------N-ANTCPTCRKKINHK 126 (133)
T ss_dssp ------H-CSBCTTTCCBCCGG
T ss_pred ------c-CCCCCCCCCcCChh
Confidence 1 27999999999865
No 5
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=98.98 E-value=8.6e-12 Score=101.68 Aligned_cols=65 Identities=26% Similarity=0.587 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHHHhhhcccccccCCCCCCCCceEEeccccceeeee------cCCCeeecCcccCCCCCCChhh
Q 009562 128 PNLAEKFERFLLESFIEDNKMVKWCPSTPHCGNAIRVEEVEVCEVEC------ACGAQFCFSCLSEAHSPCSCSM 196 (532)
Q Consensus 128 ~e~~eky~~~l~~~~v~~~~~~~~CP~~p~C~~~i~~~~~~~~~v~C------~C~~~fC~~C~~~~H~p~~C~~ 196 (532)
++++++|++++++++|+.+. ++||| .|+|++++..+++ ...+.| .|++.||+.|+.+||. .+|..
T Consensus 5 ~~~~~rY~~~~~e~~v~~~~-~~~CP-~p~C~~~v~~~~~-~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 5 EEQYNRYQQYGAEECVLQMG-GVLCP-RPGCGAGLLPEPD-QRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSA 75 (80)
T ss_dssp CCCCCSCCCSSSCCSSCCCS-SCCCC-SSSCCCCCCCCSC-TTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSS
T ss_pred HHHHHHHHHHHHHHHhhhCC-cEECC-CCCCCcccEECCC-CCcCCCCCCCCCCCCCeeccccCccccC-Ccccc
Confidence 78899999999999999886 99999 6999999987653 345899 5999999999999999 99975
No 6
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.64 E-value=2.6e-08 Score=92.34 Aligned_cols=84 Identities=26% Similarity=0.511 Sum_probs=59.0
Q ss_pred cccccccccccccccccCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccChHHHHHHhcCCChhHHHHH
Q 009562 55 LSSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVRNLVSKKHPNLAEKF 134 (532)
Q Consensus 55 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~~i~~ll~~~~~e~~eky 134 (532)
..+.+.|+||++.+. +++.++|||.||..||..++... ...||. |+..+.... +.. ...
T Consensus 15 ~~~~~~C~IC~~~~~--~pv~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~---~~~---~~~---- 73 (170)
T 3hcs_A 15 LESKYECPICLMALR--EAVQTPCGHRFCKACIIKSIRDA-------GHKCPV--DNEILLENQ---LFP---DNF---- 73 (170)
T ss_dssp CCGGGBCTTTCSBCS--SEEECTTSCEEEHHHHHHHHHHH-------CSBCTT--TCCBCCGGG---CEE---CHH----
T ss_pred CCCCCCCCCCChhhc--CcEECCCCCHHHHHHHHHHHHhC-------CCCCCC--CccCcchhh---hhh---hHH----
Confidence 346799999999976 78889999999999999999753 138998 888776542 222 111
Q ss_pred HHHHHHHhhhcccccccCCCCCCCCceEEecc
Q 009562 135 ERFLLESFIEDNKMVKWCPSTPHCGNAIRVEE 166 (532)
Q Consensus 135 ~~~l~~~~v~~~~~~~~CP~~p~C~~~i~~~~ 166 (532)
++..+. ...+.|| +.+|+..+....
T Consensus 74 ----~~~~i~--~l~v~C~-n~GC~~~~~~~~ 98 (170)
T 3hcs_A 74 ----AKREIL--SLMVKCP-NEGCLHKMELRH 98 (170)
T ss_dssp ----HHHHHH--TSEEECC-STTCCCEEEGGG
T ss_pred ----HHHHHh--hcccCCC-CCCCCceecHhH
Confidence 111111 1345899 579999888655
No 7
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.45 E-value=2.6e-08 Score=80.07 Aligned_cols=57 Identities=25% Similarity=0.568 Sum_probs=45.0
Q ss_pred ccccccccccccccccCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccChH
Q 009562 56 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 117 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 117 (532)
.+.++|+||++.+. +++.++|||.||..|+..|+......+. ....||. |+..+...
T Consensus 10 ~~~~~C~IC~~~~~--~p~~l~CgH~fC~~Ci~~~~~~~~~~~~-~~~~CP~--Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELLT--EPLSLDCGHSLCRACITVSNKEAVTSMG-GKSSCPV--CGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEECS--SCCCCSSSCCCCHHHHSCCCCCCSSSCC-CCCCCSS--SCCCCCSS
T ss_pred ccCCCCcCCCcccC--CeeECCCCCHHHHHHHHHHHHhcccCCC-CCCcCCC--CCCcCCHh
Confidence 35789999999976 7788999999999999999876443222 3589998 98877653
No 8
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=2.4e-07 Score=71.20 Aligned_cols=45 Identities=31% Similarity=0.698 Sum_probs=37.2
Q ss_pred ccccccccccccccccCceecCCCCcccHHHHHHHHHhhhccCCcccccccc
Q 009562 56 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMA 107 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~ 107 (532)
.+.+.|+||++.+. +++.++|||.||..|+..|+... . ....||.
T Consensus 18 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~--~---~~~~CP~ 62 (63)
T 2ysj_A 18 QEEVICPICLDILQ--KPVTIDCGHNFCLKCITQIGETS--C---GFFKCPL 62 (63)
T ss_dssp CCCCBCTTTCSBCS--SCEECTTSSEECHHHHHHHHHHC--S---SCCCCSC
T ss_pred ccCCCCCcCCchhC--CeEEeCCCCcchHHHHHHHHHcC--C---CCCcCcC
Confidence 45789999999976 78888999999999999999851 1 2468886
No 9
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=1.9e-07 Score=75.70 Aligned_cols=56 Identities=27% Similarity=0.679 Sum_probs=45.6
Q ss_pred ccccccccccccccccCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccChH
Q 009562 56 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 117 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 117 (532)
.+.+.|+||++.+. +++.++|||.||..|+..|+..+...+. ...||. |+..+...
T Consensus 17 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~~~~--~~~CP~--Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELLT--QPLSLDCGHSFCQACLTANHKKSMLDKG--ESSCPV--CRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCCS--SCBCCSSSCCBCTTHHHHHHHHHHHTTS--CCCCTT--TCCSSCSS
T ss_pred cCCCCCCCCCcccC--CceeCCCCCHHHHHHHHHHHHHhhcCCC--CCcCCC--CCCccCHH
Confidence 45789999999976 6788899999999999999988654432 589998 98877643
No 10
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=7.5e-08 Score=76.14 Aligned_cols=52 Identities=29% Similarity=0.701 Sum_probs=42.2
Q ss_pred ccccccccccccccccCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccCh
Q 009562 56 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 116 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~ 116 (532)
...+.|+||++.+. +++.++|||.||..|+..|+... .....||. |+..+..
T Consensus 18 ~~~~~C~IC~~~~~--~~~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~--Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQ--KPVTIDCGHNFCLKCITQIGETS-----CGFFKCPL--CKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCS--SEEECTTCCEEEHHHHHHHCSSS-----CSCCCCSS--SCCCCCC
T ss_pred ccCCEeccCCcccC--CeEEcCCCChhhHHHHHHHHHcC-----CCCCCCCC--CCCcCCc
Confidence 45789999999876 78888999999999999998621 13579998 8887654
No 11
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.42 E-value=1.5e-07 Score=76.08 Aligned_cols=53 Identities=28% Similarity=0.557 Sum_probs=41.2
Q ss_pred ccccccccccccccccCceecC--CCCcccHHHHHHHHHhhhccCCcccccccccccccccChH
Q 009562 56 SSTVMCDICMEEVAGDKATKMD--CGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 117 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~~~~l~--CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 117 (532)
.+.++|+||++.+...++..++ |||.||..||..++.. + ...||. |...+...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~----~---~~~CP~--CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD----E---NGLCPA--CRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS----S---CSBCTT--TCCBCSSC
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc----C---CCCCCC--CCCccCCC
Confidence 4578999999988655555554 9999999999998753 2 368999 99877653
No 12
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.41 E-value=1.2e-07 Score=78.54 Aligned_cols=49 Identities=20% Similarity=0.674 Sum_probs=41.0
Q ss_pred ccccccccccccccccCceecC-CCCcccHHHHHHHHHhhhccCCccccccccccccccc
Q 009562 56 SSTVMCDICMEEVAGDKATKMD-CGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 114 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~ 114 (532)
.+.+.|+||++.+. +++.++ |||.||..|+..++... + ...||. |...+
T Consensus 11 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~---~---~~~CP~--Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMT--DAVVIPCCGNSYCDECIRTALLES---D---EHTCPT--CHQND 60 (92)
T ss_dssp CTTTEETTTTEECS--SCEECTTTCCEECHHHHHHHHHHC---T---TCCCTT--TCCSS
T ss_pred CcCCCCCCCChhhc--CceECCCCCCHHHHHHHHHHHHhc---C---CCcCcC--CCCcC
Confidence 45789999999876 888998 99999999999999742 2 378998 88765
No 13
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.41 E-value=2.5e-07 Score=74.99 Aligned_cols=56 Identities=27% Similarity=0.607 Sum_probs=44.9
Q ss_pred ccccccccccccccccCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccChH
Q 009562 56 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 117 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 117 (532)
...+.|+||++.+. +++.++|||.||..|+..|+......+ ....||. |+..+...
T Consensus 17 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~~~--~~~~CP~--Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLK--EPVSADCNHSFCRACITLNYESNRNTD--GKGNCPV--CRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCS--SCEECTTSCCBCHHHHHHHHHHSBCTT--SCBCCTT--TCCCCCTT
T ss_pred ccCCCCcCCChhhC--cceeCCCCCHHHHHHHHHHHHhccCCC--CCCCCCC--CCCcCCHH
Confidence 45789999999976 777889999999999999998754222 3589998 98877643
No 14
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=1.5e-07 Score=73.08 Aligned_cols=51 Identities=22% Similarity=0.609 Sum_probs=41.6
Q ss_pred ccccccccccccccccCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccChH
Q 009562 56 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 117 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 117 (532)
.+.+.|+||++.+. +++.++|||.||..|+..++.. ....||. |+..+...
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLC--SPKQTECGHRFCESCMAALLSS-------SSPKCTA--CQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEES--SCCCCSSSCCCCHHHHHHHHTT-------SSCCCTT--TCCCCCTT
T ss_pred CcCCCCCCCChHhc--CeeECCCCCHHHHHHHHHHHHh-------CcCCCCC--CCcCCChh
Confidence 45789999999976 7777899999999999999861 2368998 88877543
No 15
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=1.2e-07 Score=77.71 Aligned_cols=60 Identities=27% Similarity=0.690 Sum_probs=46.5
Q ss_pred ccccccccccccccccC--ceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccChHHHHHH
Q 009562 56 SSTVMCDICMEEVAGDK--ATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVRNL 122 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~~i~~l 122 (532)
.+.++|+||++.+...+ ++.++|||.||..|+..|+.... ....||. |+..+....+..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-----~~~~CP~--Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI-----NGVRCPF--CSKITRITSLTQL 74 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS-----SCBCCTT--TCCCBCCSSTTTS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC-----CCcCCCC--CCCcccchhHHHH
Confidence 45689999999987433 77889999999999999998641 2479998 9987766555443
No 16
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.39 E-value=1.1e-07 Score=82.37 Aligned_cols=84 Identities=21% Similarity=0.552 Sum_probs=57.8
Q ss_pred ccccccccccccccccCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccChHHHHHHhcCCChhHHHHHH
Q 009562 56 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVRNLVSKKHPNLAEKFE 135 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~~i~~ll~~~~~e~~eky~ 135 (532)
.+.+.|+||++.+. +++.++|||.||..|+..++... ...||. |+..+....+...+ ..+
T Consensus 21 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~~~~~~----~~l----- 80 (116)
T 1rmd_A 21 VKSISCQICEHILA--DPVETSCKHLFCRICILRCLKVM-------GSYCPS--CRYPCFPTDLESPV----KSF----- 80 (116)
T ss_dssp HHHTBCTTTCSBCS--SEEECTTSCEEEHHHHHHHHHHT-------CSBCTT--TCCBCCGGGCBCCC----HHH-----
T ss_pred cCCCCCCCCCcHhc--CcEEcCCCCcccHHHHHHHHhHC-------cCcCCC--CCCCCCHhhccccH----HHH-----
Confidence 35689999999975 78889999999999999999762 257998 99887664432111 111
Q ss_pred HHHHHHhhhcccccccCCCCCCCCceEEecc
Q 009562 136 RFLLESFIEDNKMVKWCPSTPHCGNAIRVEE 166 (532)
Q Consensus 136 ~~l~~~~v~~~~~~~~CP~~p~C~~~i~~~~ 166 (532)
...+. ....+|| +.+|+..+....
T Consensus 81 ----~~~i~--~l~v~C~-~~gC~~~~~~~~ 104 (116)
T 1rmd_A 81 ----LNILN--SLMVKCP-AQDCNEEVSLEK 104 (116)
T ss_dssp ----HHHHH--HCEEECC-STTCCCEEEHHH
T ss_pred ----HHHHH--HhcCCCC-CCCCcchhhHhH
Confidence 11111 1234899 469998877544
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=1.8e-07 Score=73.83 Aligned_cols=54 Identities=22% Similarity=0.526 Sum_probs=44.2
Q ss_pred cccccccccccccccccCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccChHHHH
Q 009562 55 LSSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVR 120 (532)
Q Consensus 55 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~~i~ 120 (532)
......|+||++.+. +++.++|||.||..|+..|+.. ...||. |+..+....+.
T Consensus 12 ~~~~~~C~IC~~~~~--~~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~ 65 (71)
T 2d8t_A 12 SLTVPECAICLQTCV--HPVSLPCKHVFCYLCVKGASWL--------GKRCAL--CRQEIPEDFLD 65 (71)
T ss_dssp SSSCCBCSSSSSBCS--SEEEETTTEEEEHHHHHHCTTC--------SSBCSS--SCCBCCHHHHS
T ss_pred CCCCCCCccCCcccC--CCEEccCCCHHHHHHHHHHHHC--------CCcCcC--cCchhCHhhcc
Confidence 445789999999975 7788899999999999998754 158998 99988776553
No 18
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.37 E-value=3.9e-07 Score=79.33 Aligned_cols=84 Identities=26% Similarity=0.511 Sum_probs=59.1
Q ss_pred cccccccccccccccccCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccChHHHHHHhcCCChhHHHHH
Q 009562 55 LSSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVRNLVSKKHPNLAEKF 134 (532)
Q Consensus 55 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~~i~~ll~~~~~e~~eky 134 (532)
..+.+.|+||++.+. +++.++|||.||..|+..++... ...||. |+..+.... +.. ...
T Consensus 15 ~~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~---~~~---~~~---- 73 (118)
T 3hct_A 15 LESKYECPICLMALR--EAVQTPCGHRFCKACIIKSIRDA-------GHKCPV--DNEILLENQ---LFP---DNF---- 73 (118)
T ss_dssp CCGGGBCTTTCSBCS--SEEECTTSCEEEHHHHHHHHHHH-------CSBCTT--TCCBCCGGG---CEE---CHH----
T ss_pred CCCCCCCCcCChhhc--CeEECCcCChhhHHHHHHHHhhC-------CCCCCC--CCCCcCHHh---ccc---CHH----
Confidence 346789999999876 77889999999999999998763 138998 888776532 222 111
Q ss_pred HHHHHHHhhhcccccccCCCCCCCCceEEecc
Q 009562 135 ERFLLESFIEDNKMVKWCPSTPHCGNAIRVEE 166 (532)
Q Consensus 135 ~~~l~~~~v~~~~~~~~CP~~p~C~~~i~~~~ 166 (532)
++..+. .....|| +.+|+..+.+..
T Consensus 74 ----l~~~i~--~l~v~C~-n~gC~~~~~~~~ 98 (118)
T 3hct_A 74 ----AKREIL--SLMVKCP-NEGCLHKMELRH 98 (118)
T ss_dssp ----HHHHHH--TSEEECS-STTCCCEEEGGG
T ss_pred ----HHHHHc--cceeECC-CCCCCCEEeeHH
Confidence 111222 1345899 589998888655
No 19
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.33 E-value=1.9e-07 Score=78.96 Aligned_cols=51 Identities=25% Similarity=0.514 Sum_probs=42.8
Q ss_pred cccccccccccccccCcee-cCCCCcccHHHHHHHHHhhhccCCcccccccccccccccChHH
Q 009562 57 STVMCDICMEEVAGDKATK-MDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAV 118 (532)
Q Consensus 57 ~~~~C~IC~e~~~~~~~~~-l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~~ 118 (532)
+.+.|+||++.+. +++. ++|||.||..|+..|+... ...||. |...+....
T Consensus 21 ~~~~C~IC~~~~~--~p~~~~~CgH~FC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~ 72 (100)
T 3lrq_A 21 EVFRCFICMEKLR--DARLCPHCSKLCCFSCIRRWLTEQ-------RAQCPH--CRAPLQLRE 72 (100)
T ss_dssp HHTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHHHT-------CSBCTT--TCCBCCGGG
T ss_pred CCCCCccCCcccc--CccccCCCCChhhHHHHHHHHHHC-------cCCCCC--CCCcCCHHH
Confidence 5689999999976 7888 8999999999999999863 268998 998876544
No 20
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.32 E-value=3.2e-07 Score=76.71 Aligned_cols=57 Identities=26% Similarity=0.453 Sum_probs=45.2
Q ss_pred ccccccccccccccccCceecC-CCCcccHHHHHHHHHhhhccCCcccccccccccccc-cCh
Q 009562 56 SSTVMCDICMEEVAGDKATKMD-CGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAI-CDE 116 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~-~~~ 116 (532)
...+.|+||++.+. +++.++ |||.||+.||..||...-.. .....||..+|... +..
T Consensus 5 ~~~~~CPI~~~~~~--dPV~~~~cGh~f~r~cI~~~l~~~~~~--~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 5 SSGFTCPITKEEMK--KPVKNKVCGHTYEEDAIVRMIESRQKR--KKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SSCCBCTTTCSBCS--SEEEESSSCCEEEHHHHHHHHHHHHTT--TCCBCCCSTTCCCCCBCG
T ss_pred CcEeECcCcCchhc--CCEEcCCCCCeecHHHHHHHHHHccCc--CCCCCCCcCcCcccccCH
Confidence 35789999999976 899995 99999999999999864211 13579999999866 544
No 21
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.30 E-value=3.4e-07 Score=73.44 Aligned_cols=51 Identities=14% Similarity=0.233 Sum_probs=42.1
Q ss_pred ccccccccccccccccCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccChH
Q 009562 56 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 117 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 117 (532)
.+.+.|+||++.+. +++.++|||.||..|+..|+.. | ...||. |+..+...
T Consensus 6 ~~~~~C~IC~~~~~--~Pv~~~CgH~fc~~Ci~~~~~~----~---~~~CP~--C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELMK--DPVIVSTGQTYERSSIQKWLDA----G---HKTCPK--SQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCS--SEEEETTTEEEEHHHHHHHHTT----T---CCBCTT--TCCBCSSC
T ss_pred cccCCCCCcccccc--CCEEcCCCCeecHHHHHHHHHH----C---cCCCCC--CcCCCChh
Confidence 35789999999876 8888999999999999999963 2 368998 88877543
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.30 E-value=5.4e-07 Score=71.71 Aligned_cols=50 Identities=20% Similarity=0.679 Sum_probs=41.1
Q ss_pred cccccccccccccccccCceecC-CCCcccHHHHHHHHHhhhccCCccccccccccccccc
Q 009562 55 LSSTVMCDICMEEVAGDKATKMD-CGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 114 (532)
Q Consensus 55 ~~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~ 114 (532)
....+.|+||++.+. +++.++ |||.||..|+..|+... + ...||. |+..+
T Consensus 12 ~~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~---~---~~~CP~--Cr~~~ 62 (74)
T 2yur_A 12 IPDELLCLICKDIMT--DAVVIPCCGNSYCDECIRTALLES---D---EHTCPT--CHQND 62 (74)
T ss_dssp SCGGGSCSSSCCCCT--TCEECSSSCCEECTTHHHHHHHHS---S---SSCCSS--SCCSS
T ss_pred CCCCCCCcCCChHHh--CCeEcCCCCCHHHHHHHHHHHHhc---C---CCcCCC--CCCcC
Confidence 346789999999976 788898 99999999999999852 2 368998 88753
No 23
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.30 E-value=3.8e-07 Score=82.12 Aligned_cols=48 Identities=23% Similarity=0.635 Sum_probs=39.7
Q ss_pred ccccccccccccccccCceecCCCCcccHHHHHHHHHhhhccCCccccccccccccccc
Q 009562 56 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 114 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~ 114 (532)
.+.+.|+||++.+. +++.++|||.||..|+..++.. + ...||. |+..+
T Consensus 29 ~~~~~C~IC~~~~~--~pv~~~CgH~FC~~Ci~~~~~~----~---~~~CP~--Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLR--RPFQAQCGHRYCSFCLASILSS----G---PQNCAA--CVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCS--SEEECTTSCEEEHHHHHHHGGG----S---CEECHH--HHHTT
T ss_pred CcCcCCCCCChhhc--CcEECCCCCccCHHHHHHHHhc----C---CCCCCC--CCCcc
Confidence 46789999999976 7888999999999999999853 2 368998 87654
No 24
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.29 E-value=2.9e-07 Score=79.64 Aligned_cols=52 Identities=25% Similarity=0.650 Sum_probs=42.7
Q ss_pred CcccccccccccccccccCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccCh
Q 009562 54 PLSSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 116 (532)
Q Consensus 54 ~~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~ 116 (532)
+..+.+.|+||++.+. +++.++|||.||..|+..++.. + ...||. |...+..
T Consensus 11 ~~~~~~~C~iC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~----~---~~~CP~--Cr~~~~~ 62 (115)
T 3l11_A 11 PSLSECQCGICMEILV--EPVTLPCNHTLCKPCFQSTVEK----A---SLCCPF--CRRRVSS 62 (115)
T ss_dssp CCHHHHBCTTTCSBCS--SCEECTTSCEECHHHHCCCCCT----T---TSBCTT--TCCBCHH
T ss_pred CCCCCCCCccCCcccC--ceeEcCCCCHHhHHHHHHHHhH----C---cCCCCC--CCcccCc
Confidence 3456789999999976 7888999999999999998853 2 378998 9987764
No 25
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=7.4e-07 Score=72.06 Aligned_cols=48 Identities=29% Similarity=0.683 Sum_probs=40.6
Q ss_pred ccccccccccccccccCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccC
Q 009562 56 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 115 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 115 (532)
...+.|+||++.+. +++.++|||.||..|+..|+.. ...||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQ--NPVVTKCRHYFCESCALEHFRA--------TPRCYI--CDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCC--SEEECTTSCEEEHHHHHHHHHH--------CSBCSS--SCCBCC
T ss_pred CCCCCCcCCCchhc--CeeEccCCCHhHHHHHHHHHHC--------CCcCCC--cCcccc
Confidence 35689999999975 7888999999999999999964 258998 888765
No 26
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.27 E-value=3.8e-07 Score=78.18 Aligned_cols=54 Identities=22% Similarity=0.553 Sum_probs=43.3
Q ss_pred cccccccccccccccCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccChHHH
Q 009562 57 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVV 119 (532)
Q Consensus 57 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~~i 119 (532)
..+.|+||++.+. +++.++|||.||..|+..|+... . ....||. |...+....+
T Consensus 20 ~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~--~---~~~~CP~--Cr~~~~~~~~ 73 (112)
T 1jm7_A 20 KILECPICLELIK--EPVSTKCDHIFCKFCMLKLLNQK--K---GPSQCPL--CKNDITKRSL 73 (112)
T ss_dssp HHTSCSSSCCCCS--SCCBCTTSCCCCSHHHHHHHHSS--S---SSCCCTT--TSCCCCTTTC
T ss_pred CCCCCcccChhhc--CeEECCCCCHHHHHHHHHHHHhC--C---CCCCCcC--CCCcCCHhhc
Confidence 3578999999875 77888999999999999999853 1 2378998 9987765443
No 27
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=1e-06 Score=69.55 Aligned_cols=50 Identities=32% Similarity=0.830 Sum_probs=41.2
Q ss_pred ccccccccccccccccCceec-CCCCcccHHHHHHHHHhhhccCCcccccccccccccccChH
Q 009562 56 SSTVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 117 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 117 (532)
...+.|+||++.+. +++.+ +|||.||..|+..|+.. ...||. |+..+...
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~ 63 (72)
T 2djb_A 13 TPYILCSICKGYLI--DATTITECLHTFCKSCIVRHFYY--------SNRCPK--CNIVVHQT 63 (72)
T ss_dssp CGGGSCTTTSSCCS--SCEECSSSCCEECHHHHHHHHHH--------CSSCTT--TCCCCCSS
T ss_pred CCCCCCCCCChHHH--CcCEECCCCCHHHHHHHHHHHHc--------CCcCCC--cCcccCcc
Confidence 45789999999876 67776 99999999999999965 258998 98877543
No 28
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.25 E-value=4.1e-07 Score=79.80 Aligned_cols=50 Identities=28% Similarity=0.561 Sum_probs=41.7
Q ss_pred ccccccccccccccccCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccCh
Q 009562 56 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 116 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~ 116 (532)
...+.|+||++.+. +++.++|||.||..|+..|+.. ....||. |+..+..
T Consensus 50 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVF--RPITTVCQHNVCKDCLDRSFRA-------QVFSCPA--CRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCS--SEEECTTSCEEEHHHHHHHHHT-------TCCBCTT--TCCBCCT
T ss_pred ccCCCCCcCChHHc--CcEEeeCCCcccHHHHHHHHhH-------CcCCCCC--CCccCCC
Confidence 35688999999976 8888999999999999999972 2368998 8887754
No 29
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.24 E-value=1.6e-07 Score=73.76 Aligned_cols=53 Identities=28% Similarity=0.678 Sum_probs=40.8
Q ss_pred ccccccccccccccc-----cCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccChHH
Q 009562 56 SSTVMCDICMEEVAG-----DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAV 118 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~~ 118 (532)
++...|+||++.+.. ..++.++|||.||..|+..|+... ..||. |+..+....
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~ 65 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKR 65 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--------SBCTT--TCCBCCCCS
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--------CCCCC--CCCccChhh
Confidence 457899999999752 122677999999999999998752 48998 888776443
No 30
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.24 E-value=5.5e-07 Score=66.99 Aligned_cols=49 Identities=27% Similarity=0.633 Sum_probs=39.0
Q ss_pred cccccccccccccc--cCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccC
Q 009562 57 STVMCDICMEEVAG--DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 115 (532)
Q Consensus 57 ~~~~C~IC~e~~~~--~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 115 (532)
....|+||++.+.. ..++.++|||.||..|+..|+... ..||. |+..++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--------YRCPL--CSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--------CCCTT--SCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--------CcCCC--CCCcCC
Confidence 45789999999753 236677999999999999999863 57998 877653
No 31
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=9.6e-07 Score=66.32 Aligned_cols=45 Identities=27% Similarity=0.729 Sum_probs=36.0
Q ss_pred ccccccccccccccccCceecCCCCcccHHHHHHHHHhhhccCCcccccccc
Q 009562 56 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMA 107 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~ 107 (532)
.+...|+||++.+. +++.++|||.||..|+..|+... . ....||.
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~--~---~~~~CP~ 57 (58)
T 2ecj_A 13 QVEASCSVCLEYLK--EPVIIECGHNFCKACITRWWEDL--E---RDFPCPV 57 (58)
T ss_dssp CCCCBCSSSCCBCS--SCCCCSSCCCCCHHHHHHHTTSS--C---CSCCCSC
T ss_pred ccCCCCccCCcccC--ccEeCCCCCccCHHHHHHHHHhc--C---CCCCCCC
Confidence 35689999999976 67888999999999999997641 1 2468886
No 32
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.21 E-value=2e-07 Score=72.19 Aligned_cols=53 Identities=21% Similarity=0.467 Sum_probs=39.3
Q ss_pred ccccccccc-cccccC--ceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccChHHH
Q 009562 58 TVMCDICME-EVAGDK--ATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVV 119 (532)
Q Consensus 58 ~~~C~IC~e-~~~~~~--~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~~i 119 (532)
..+|+||++ .+.... ++.++|||.||..|+..++.. + ...||. |+..+....+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~----~---~~~CP~--Cr~~~~~~~~ 58 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR----G---AGNCPE--CGTPLRKSNF 58 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT----T---SSSCTT--TCCCCSSCCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc----C---CCcCCC--CCCccccccc
Confidence 578999999 554211 145799999999999999863 2 368998 9987765433
No 33
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=9.3e-07 Score=68.74 Aligned_cols=50 Identities=30% Similarity=0.707 Sum_probs=39.1
Q ss_pred cccccccccccccccc-----CceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccC
Q 009562 56 SSTVMCDICMEEVAGD-----KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 115 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~-----~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 115 (532)
.....|+||++.+... .++.++|||.||..|+..|+.. ...||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--------CSSCTT--TCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--------CCCCCC--CCCccC
Confidence 4578999999997521 1267799999999999999875 248998 887664
No 34
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.19 E-value=5.4e-07 Score=80.63 Aligned_cols=47 Identities=30% Similarity=0.709 Sum_probs=39.0
Q ss_pred cccccccccccccccCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccC
Q 009562 57 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 115 (532)
Q Consensus 57 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 115 (532)
+.++|+||++.+. +++.++|||.||..|+..|+.. ...||. |...+.
T Consensus 52 ~~~~C~iC~~~~~--~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 98 (138)
T 4ayc_A 52 NELQCIICSEYFI--EAVTLNCAHSFCSYCINEWMKR--------KIECPI--CRKDIK 98 (138)
T ss_dssp HHSBCTTTCSBCS--SEEEETTSCEEEHHHHHHHTTT--------CSBCTT--TCCBCC
T ss_pred ccCCCcccCcccC--CceECCCCCCccHHHHHHHHHc--------CCcCCC--CCCcCC
Confidence 3578999999976 7889999999999999999753 257998 887653
No 35
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.19 E-value=1.2e-06 Score=71.85 Aligned_cols=50 Identities=6% Similarity=0.020 Sum_probs=42.3
Q ss_pred ccccccccccccccccCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccChH
Q 009562 56 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 117 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 117 (532)
...+.|+||++.+. +++.++|||.||+.|+..||.. ...||. |+..+...
T Consensus 12 p~~~~CpI~~~~m~--dPV~~~cGhtf~r~~I~~~l~~--------~~~cP~--~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMT--DPVRLPSGTVMDRSIILRHLLN--------SPTDPF--NRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCS--SEEECTTSCEEEHHHHHHHHHH--------CSBCTT--TCCBCCGG
T ss_pred chheECcccCchhc--CCeECCCCCEECHHHHHHHHhc--------CCCCCC--CcCCCChH
Confidence 45799999999976 9999999999999999999974 147998 78777654
No 36
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.18 E-value=5.6e-07 Score=75.66 Aligned_cols=49 Identities=24% Similarity=0.649 Sum_probs=40.6
Q ss_pred cccccccccccccccCceec-CCCCcccHHHHHHHHHhhhccCCcccccccccccccccChH
Q 009562 57 STVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 117 (532)
Q Consensus 57 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 117 (532)
+.+.|+||++.+. +++.+ +|||.||..|+..|+.. ...||. |+..+...
T Consensus 21 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~ 70 (99)
T 2y43_A 21 DLLRCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSY--------KTQCPT--CCVTVTEP 70 (99)
T ss_dssp HHTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHTT--------CCBCTT--TCCBCCGG
T ss_pred CCCCcccCChhhC--CcCEECCCCCHhhHHHHHHHHHC--------CCCCCC--CCCcCChh
Confidence 4689999999976 67777 99999999999999874 258998 99877653
No 37
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.17 E-value=2.4e-07 Score=71.07 Aligned_cols=52 Identities=25% Similarity=0.660 Sum_probs=40.1
Q ss_pred cccccccccccccc-----cCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccChHH
Q 009562 57 STVMCDICMEEVAG-----DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAV 118 (532)
Q Consensus 57 ~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~~ 118 (532)
+..+|+||++.+.. ..++.++|||.||..|+..|+.. ...||. |+..+....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--------CSBCTT--TCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--------CCCCCC--CCccCCccc
Confidence 35789999999752 12367799999999999999875 248998 988776543
No 38
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.13 E-value=2.8e-06 Score=66.31 Aligned_cols=50 Identities=20% Similarity=0.574 Sum_probs=39.5
Q ss_pred ccccccccccccccc-cCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccC
Q 009562 56 SSTVMCDICMEEVAG-DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 115 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~-~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 115 (532)
.....|+||++.+.. ..++.++|||.||..|+..|+... ..||. |+..+.
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~ 62 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN--------KKCPI--CRVDIE 62 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC--------SBCTT--TCSBSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC--------CCCcC--cCcccc
Confidence 346789999998754 356678999999999999998751 36998 887654
No 39
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.10 E-value=1.3e-06 Score=79.42 Aligned_cols=50 Identities=28% Similarity=0.618 Sum_probs=42.1
Q ss_pred cccccccccccccccCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccChH
Q 009562 57 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 117 (532)
Q Consensus 57 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 117 (532)
+.+.|+||++.+. +++.++|||.||..|+..++.. ....||. |...+...
T Consensus 77 ~~~~C~IC~~~~~--~pv~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVY--QPVTTECFHNVCKDCLQRSFKA-------QVFSCPA--CRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCS--SEEECTTSCEEEHHHHHHHHHT-------TCCBCTT--TCCBCCTT
T ss_pred cCCEeecCChhhc--CCEEcCCCCchhHHHHHHHHHh-------CCCcCCC--CCccCCCC
Confidence 5689999999876 7888999999999999999974 2368999 98877654
No 40
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.09 E-value=1.5e-06 Score=74.25 Aligned_cols=48 Identities=25% Similarity=0.622 Sum_probs=40.0
Q ss_pred ccccccccccccccccCceec-CCCCcccHHHHHHHHHhhhccCCcccccccccccccccC
Q 009562 56 SSTVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 115 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 115 (532)
...+.|+||++.+. +++.+ +|||.||..|+..++... ..||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~--------~~CP~--Cr~~~~ 61 (108)
T 2ckl_A 13 NPHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETS--------KYCPI--CDVQVH 61 (108)
T ss_dssp GGGTBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHTSC--------SBCTT--TCCBSC
T ss_pred CCcCCCccCChHHh--CcCEeCCCCChhhHHHHHHHHHhC--------CcCcC--CCcccc
Confidence 35789999999976 77887 999999999999998751 68998 887664
No 41
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.99 E-value=2.3e-06 Score=72.38 Aligned_cols=49 Identities=6% Similarity=-0.016 Sum_probs=41.8
Q ss_pred ccccccccccccccccCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccCh
Q 009562 56 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 116 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~ 116 (532)
...+.|+||++.+. +|+.++|||.||+.|+..||.. ...||. |+..+..
T Consensus 27 p~~~~CpI~~~~m~--dPV~~~cGhtf~r~~I~~~l~~--------~~~cP~--~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMT--DPVRLPSGTIMDRSIILRHLLN--------SPTDPF--NRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCS--SEEEETTTEEEEHHHHHHHTTS--------CSBCSS--SCCBCCT
T ss_pred cHhhCCcCccCccc--CCeECCCCCEEchHHHHHHHHc--------CCCCCC--CCCCCCh
Confidence 46799999999976 9999999999999999999973 257998 8877764
No 42
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.98 E-value=3.8e-06 Score=70.75 Aligned_cols=50 Identities=4% Similarity=-0.073 Sum_probs=42.4
Q ss_pred ccccccccccccccccCceecCCC-CcccHHHHHHHHHhhhccCCcccccccccccccccChH
Q 009562 56 SSTVMCDICMEEVAGDKATKMDCG-HCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 117 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~~~~l~Cg-H~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 117 (532)
.+.+.|+||++.+. +++.++|| |.||+.||..||.. ...||. |+..+...
T Consensus 20 p~~~~CpI~~~~m~--dPV~~~cG~htf~r~cI~~~l~~--------~~~cP~--~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMC--DPVVLPSSRVTVDRSTIARHLLS--------DQTDPF--NRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHTTT--------SCBCTT--TCSBCCTT
T ss_pred cHhcCCcCcccccc--CCeECCCCCeEECHHHHHHHHHh--------CCCCCC--CCCCCChh
Confidence 46799999999976 99999999 99999999999974 147998 88877643
No 43
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.97 E-value=4.2e-06 Score=82.07 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=45.2
Q ss_pred cccccccccccccccccCceec-CCCCcccHHHHHHHHHhhhccCCcccccccccccccccChH
Q 009562 55 LSSTVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 117 (532)
Q Consensus 55 ~~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 117 (532)
....+.||||++.+. +|++. .|||.||+.||..||.. .| ...||..||...+...
T Consensus 178 ~~~el~CPIcl~~f~--DPVts~~CGHsFcR~cI~~~~~~---~~---~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 178 GKIELTCPITCKPYE--APLISRKCNHVFDRDGIQNYLQG---YT---TRDCPQAACSQVVSMR 233 (267)
T ss_dssp SBCCSBCTTTSSBCS--SEEEESSSCCEEEHHHHHHHSTT---CS---CEECSGGGCSCEECGG
T ss_pred CceeeECcCccCccc--CCeeeCCCCCcccHHHHHHHHHh---CC---CCCCCcccccCcCchh
Confidence 346789999999976 88875 99999999999999974 12 3789999999877553
No 44
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.96 E-value=1.1e-06 Score=66.05 Aligned_cols=44 Identities=23% Similarity=0.603 Sum_probs=36.1
Q ss_pred cccccccccccccccCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccC
Q 009562 57 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 115 (532)
Q Consensus 57 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 115 (532)
+.+.|+||++.+. +++.++|||.||..|+.. ....||. |+..+.
T Consensus 5 ~~~~C~IC~~~~~--~p~~l~CgH~fC~~Ci~~-----------~~~~CP~--Cr~~~~ 48 (56)
T 1bor_A 5 QFLRCQQCQAEAK--CPKLLPCLHTLCSGCLEA-----------SGMQCPI--CQAPWP 48 (56)
T ss_dssp CCSSCSSSCSSCB--CCSCSTTSCCSBTTTCSS-----------SSSSCSS--CCSSSS
T ss_pred cCCCceEeCCccC--CeEEcCCCCcccHHHHcc-----------CCCCCCc--CCcEee
Confidence 4678999999976 778899999999999866 1368998 887654
No 45
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.95 E-value=3e-06 Score=62.99 Aligned_cols=48 Identities=25% Similarity=0.601 Sum_probs=37.4
Q ss_pred ccccccccccccccc-CceecC-CCCcccHHHHHHHHHhhhccCCccccccccccccccc
Q 009562 57 STVMCDICMEEVAGD-KATKMD-CGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 114 (532)
Q Consensus 57 ~~~~C~IC~e~~~~~-~~~~l~-CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~ 114 (532)
+..+|+||++.+..+ .+..++ |||.||..|+..|+.. ...||. |+..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--------~~~CP~--Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--------HSTCPL--CRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--------CCSCSS--SCCCS
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc--------CCcCcC--CCCEe
Confidence 457899999997643 356676 9999999999999853 247998 87755
No 46
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.93 E-value=4.6e-06 Score=66.67 Aligned_cols=52 Identities=21% Similarity=0.489 Sum_probs=40.4
Q ss_pred cccccccccccccccc-CceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccChH
Q 009562 56 SSTVMCDICMEEVAGD-KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 117 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 117 (532)
.....|+||++.+... .+..++|||.||..|+..|+.. ...||. |+..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ--------HDSCPV--CRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT--------TCSCTT--TCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc--------CCcCcC--cCCccCCc
Confidence 4568999999997643 3455799999999999999853 148998 98876543
No 47
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=8e-06 Score=64.56 Aligned_cols=50 Identities=22% Similarity=0.524 Sum_probs=38.8
Q ss_pred cccccccccccccccc-CceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccC
Q 009562 56 SSTVMCDICMEEVAGD-KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 115 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 115 (532)
.....|+||++.+... ....++|+|.||..|+..|+... ..||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~--------~~CP~--Cr~~~~ 63 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR--------KVCPL--CNMPVL 63 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC--------SBCTT--TCCBCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC--------CcCCC--cCcccc
Confidence 3467899999997643 34456999999999999999752 37998 887653
No 48
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.92 E-value=6.7e-06 Score=70.70 Aligned_cols=53 Identities=25% Similarity=0.517 Sum_probs=38.5
Q ss_pred ccccccccccccccC---------------c-eecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccC
Q 009562 58 TVMCDICMEEVAGDK---------------A-TKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 115 (532)
Q Consensus 58 ~~~C~IC~e~~~~~~---------------~-~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 115 (532)
..+|+||++.+.... . ..++|+|.||..|+..|+...-.. ....||. |+..+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~---~~~~CP~--CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKD---GSLQCPS--CKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCS---SCCBCTT--TCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCC---CCCcCCC--CCCccC
Confidence 458999999975311 1 256999999999999999542212 2478998 987764
No 49
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.91 E-value=4.7e-06 Score=64.72 Aligned_cols=48 Identities=25% Similarity=0.609 Sum_probs=37.9
Q ss_pred cccccccccccccccCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccC
Q 009562 57 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 115 (532)
Q Consensus 57 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 115 (532)
....|+||++.+. +..+.++|||.||..|+..|+.. ...||. |+..+.
T Consensus 4 ~~~~C~IC~~~~~-~~~~~~~C~H~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPS-NYSMALPCLHAFCYVCITRWIRQ--------NPTCPL--CKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCC-SCEEETTTTEEESTTHHHHHHHH--------SCSTTT--TCCCCC
T ss_pred CCCCCeeCCcccc-CCcEecCCCCeeHHHHHHHHHhC--------cCcCcC--CChhhH
Confidence 3568999999965 22467899999999999999864 148998 887664
No 50
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.90 E-value=7.2e-06 Score=67.89 Aligned_cols=51 Identities=24% Similarity=0.529 Sum_probs=39.7
Q ss_pred ccccccccccccccccC-ceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccCh
Q 009562 56 SSTVMCDICMEEVAGDK-ATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 116 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~-~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~ 116 (532)
.....|+||++.+...+ +..++|||.||..|+..|+.. ...||. |...++.
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~--------~~~CP~--Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK--------SGTCPV--CRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT--------TCBCTT--TCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc--------CCcCcC--cCccCCC
Confidence 35678999999976433 556799999999999999853 137998 8876653
No 51
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.89 E-value=2e-06 Score=74.69 Aligned_cols=46 Identities=20% Similarity=0.538 Sum_probs=39.0
Q ss_pred cccccccccccccccCceec-CCCCcccHHHHHHHHHhhhccCCcccccccccccccccCh
Q 009562 57 STVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 116 (532)
Q Consensus 57 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~ 116 (532)
+.+.|+||++.+. +++.+ +|||.||..|+..++. ..||. |...+..
T Consensus 21 ~~~~C~IC~~~~~--~pv~~~~CgH~fC~~Ci~~~~~----------~~CP~--Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILR--EPVCLGGCEHIFCSNCVSDCIG----------TGCPV--CYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCS--SCBCCCSSSCCBCTTTGGGGTT----------TBCSS--SCCBCSC
T ss_pred hCCCCCCCChHhh--CccEeCCCCCHHHHHHHHHHhc----------CCCcC--CCCcCcc
Confidence 4689999999976 78888 9999999999999875 57998 8877643
No 52
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.89 E-value=5.3e-06 Score=76.30 Aligned_cols=49 Identities=29% Similarity=0.698 Sum_probs=40.2
Q ss_pred ccccccccccccccccCceec-CCCCcccHHHHHHHHHhhhccCCcccccccccccccccC
Q 009562 56 SSTVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 115 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 115 (532)
...+.|+||++.+. +++.+ +|||.||..|+..|+.. + ...||. |+..+.
T Consensus 52 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~----~---~~~CP~--Cr~~~~ 101 (165)
T 2ckl_B 52 HSELMCPICLDMLK--NTMTTKECLHRFCADCIITALRS----G---NKECPT--CRKKLV 101 (165)
T ss_dssp HHHHBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHHT----T---CCBCTT--TCCBCC
T ss_pred CCCCCCcccChHhh--CcCEeCCCCChhHHHHHHHHHHh----C---cCCCCC--CCCcCC
Confidence 35679999999976 67776 99999999999999873 1 368998 888763
No 53
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.88 E-value=4.9e-06 Score=66.08 Aligned_cols=50 Identities=22% Similarity=0.536 Sum_probs=39.4
Q ss_pred ccccccccccccccccC-ceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccC
Q 009562 56 SSTVMCDICMEEVAGDK-ATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 115 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~-~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 115 (532)
.....|+||++.+...+ +..++|+|.||..|+..|+... ..||. |+..+.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~--------~~CP~--Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN--------RTCPI--CRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC--------SSCTT--TCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC--------CcCcC--cCCcCC
Confidence 35678999999976433 4567999999999999998652 47998 887664
No 54
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=4.2e-06 Score=65.47 Aligned_cols=47 Identities=26% Similarity=0.579 Sum_probs=37.9
Q ss_pred ccccccccccccccccCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccC
Q 009562 56 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 115 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 115 (532)
.....|+||++.+. + +.++|||.||..|+..|+.. ...||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~~--~-~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 59 (70)
T 2ecn_A 13 TDEEECCICMDGRA--D-LILPCAHSFCQKCIDKWSDR--------HRNCPI--CRLQMT 59 (70)
T ss_dssp CCCCCCSSSCCSCC--S-EEETTTEEECHHHHHHSSCC--------CSSCHH--HHHCTT
T ss_pred CCCCCCeeCCcCcc--C-cccCCCCcccHHHHHHHHHC--------cCcCCC--cCCccc
Confidence 34689999999976 4 77899999999999998762 368998 876654
No 55
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.85 E-value=6e-06 Score=81.74 Aligned_cols=51 Identities=12% Similarity=0.046 Sum_probs=42.4
Q ss_pred ccccccccccccccccCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccChH
Q 009562 56 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 117 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 117 (532)
+..+.|+||++.+. +|+.++|||+||+.|+..|+... + ..||. |+..+...
T Consensus 206 ~~~~~c~i~~~~~~--dPv~~~~gh~f~~~~i~~~~~~~---~----~~cP~--~~~~~~~~ 256 (281)
T 2c2l_A 206 PDYLCGKISFELMR--EPCITPSGITYDRKDIEEHLQRV---G----HFNPV--TRSPLTQE 256 (281)
T ss_dssp CSTTBCTTTCSBCS--SEEECSSCCEEETTHHHHHHHHT---C----SSCTT--TCCCCCGG
T ss_pred CcccCCcCcCCHhc--CCeECCCCCEECHHHHHHHHHHC---C----CCCcC--CCCCCchh
Confidence 45799999999976 99999999999999999999751 2 24998 88887653
No 56
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.72 E-value=1.5e-05 Score=74.37 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=42.6
Q ss_pred ccccccccccccccccCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccChH
Q 009562 56 SSTVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 117 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 117 (532)
+..+.||||++.+. +|+.++|||.||+.|+..||... |. .||. |+..+...
T Consensus 104 p~~f~CPI~~elm~--DPV~~~~Ghtfer~~I~~~l~~~---~~----tcP~--t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMR--EPCITPSGITYDRKDIEEHLQRV---GH----FDPV--TRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCS--SEEECTTSCEEEHHHHHHHHHHT---CS----BCTT--TCCBCCGG
T ss_pred cHhhcccCccccCC--CCeECCCCCEECHHHHHHHHHhC---CC----CCCC--CcCCCChh
Confidence 46899999999976 89999999999999999999752 22 6998 88877654
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.70 E-value=1.1e-05 Score=64.10 Aligned_cols=43 Identities=26% Similarity=0.689 Sum_probs=35.7
Q ss_pred cccccccccccccccCceecCCCCc-ccHHHHHHHHHhhhccCCcccccccccccccccC
Q 009562 57 STVMCDICMEEVAGDKATKMDCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 115 (532)
Q Consensus 57 ~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 115 (532)
+...|+||++.+. +++.++|||. ||..|+..+ ..||. |+..+.
T Consensus 23 ~~~~C~iC~~~~~--~~~~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNI--AIVFVPCGHLVTCKQCAEAV------------DKCPM--CYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBC--CEEEETTCCBCCCHHHHTTC------------SBCTT--TCCBCS
T ss_pred cCCCCCCCCCCCC--CEEEcCCCChhHHHHhhhcC------------ccCCC--cCcCcc
Confidence 4578999999865 7888999999 999998765 57998 887664
No 58
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.60 E-value=2.3e-05 Score=62.32 Aligned_cols=43 Identities=26% Similarity=0.689 Sum_probs=34.9
Q ss_pred cccccccccccccccCceecCCCCc-ccHHHHHHHHHhhhccCCcccccccccccccccC
Q 009562 57 STVMCDICMEEVAGDKATKMDCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 115 (532)
Q Consensus 57 ~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 115 (532)
+..+|+||++.+. +++.++|||. ||..|+.. ...||. |+..+.
T Consensus 24 ~~~~C~IC~~~~~--~~~~~pCgH~~~C~~C~~~------------~~~CP~--Cr~~i~ 67 (75)
T 2ecg_A 24 EEKLCKICMDRNI--AIVFVPCGHLVTCKQCAEA------------VDKCPM--CYTVIT 67 (75)
T ss_dssp HHHSCSSSCSSCC--CBCCSSSCCCCBCHHHHHH------------CSBCTT--TCCBCC
T ss_pred CCCCCCcCCCCCC--CEEEecCCCHHHHHHHhhC------------CCCCcc--CCceec
Confidence 4578999999865 7888999999 99999852 158998 887664
No 59
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.44 E-value=5.4e-05 Score=58.38 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=38.0
Q ss_pred cccccccccccccccccCceec--CCCCc-ccHHHHHHHHHhhhccCCcccccccccccccccC
Q 009562 55 LSSTVMCDICMEEVAGDKATKM--DCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 115 (532)
Q Consensus 55 ~~~~~~C~IC~e~~~~~~~~~l--~CgH~-fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 115 (532)
..+...|.||++... +++.+ +|||. ||..|...++.. .-.||. |...+.
T Consensus 5 ~~~~~~C~IC~~~~~--~~~~~~~pCgH~~~C~~C~~~~~~~--------~~~CPi--CR~~i~ 56 (64)
T 2vje_A 5 LNAIEPCVICQGRPK--NGCIVHGKTGHLMACFTCAKKLKKR--------NKPCPV--CRQPIQ 56 (64)
T ss_dssp CGGGSCCTTTSSSCS--CEEEEETTEEEEEECHHHHHHHHHT--------TCCCTT--TCCCCC
T ss_pred CCCcCCCCcCCCCCC--CEEEECCCCCChhhHHHHHHHHHHc--------CCcCCC--cCcchh
Confidence 445678999999855 56655 99999 899999988753 147998 887663
No 60
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.40 E-value=7.6e-05 Score=60.28 Aligned_cols=48 Identities=25% Similarity=0.486 Sum_probs=34.6
Q ss_pred cccccccccccc-----------ccC-ceec-CCCCcccHHHHHHHHHhhhccCCcccccccccccccccC
Q 009562 58 TVMCDICMEEVA-----------GDK-ATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 115 (532)
Q Consensus 58 ~~~C~IC~e~~~-----------~~~-~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 115 (532)
..+|+||++.+. .++ ++.+ +|+|.||.+|+..|+... -.||. |+..+.
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--------~~CP~--CR~~~~ 75 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN--------NRCPL--CQQDWV 75 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC--------CBCTT--TCCBCC
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC--------CCCCC--cCCCcc
Confidence 456777777763 222 4455 599999999999998752 37999 887664
No 61
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.34 E-value=0.00011 Score=76.42 Aligned_cols=47 Identities=26% Similarity=0.572 Sum_probs=38.8
Q ss_pred cccccccccccccCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccCh
Q 009562 59 VMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 116 (532)
Q Consensus 59 ~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~ 116 (532)
..|+||++.+. +++.++|||.||..|+..++.. ....||. |...+..
T Consensus 333 ~~C~ICle~~~--~pv~lpCGH~FC~~Ci~~wl~~-------~~~~CP~--CR~~i~~ 379 (389)
T 2y1n_A 333 QLCKICAENDK--DVKIEPCGHLMCTSCLTSWQES-------EGQGCPF--CRCEIKG 379 (389)
T ss_dssp SBCTTTSSSBC--CEEEETTCCEECHHHHHHHHHH-------TCSBCTT--TCCBCCE
T ss_pred CCCCccCcCCC--CeEEeCCCChhhHHHHHHHHhc-------CCCCCCC--CCCccCC
Confidence 68999999865 7888999999999999998863 1258998 8876643
No 62
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.33 E-value=6.6e-05 Score=65.62 Aligned_cols=55 Identities=27% Similarity=0.619 Sum_probs=42.3
Q ss_pred cccccccccccccccc-----cCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccChHHH
Q 009562 55 LSSTVMCDICMEEVAG-----DKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVV 119 (532)
Q Consensus 55 ~~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~~i 119 (532)
......|+||++.+.. ..++.++|||.||..|+..|+.. ...||. |...+....+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~ 128 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINHKRY 128 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH--------CSBCTT--TCCBCCGGGE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc--------CCCCCC--CCCcCChhcc
Confidence 4567889999998752 11267799999999999999875 148998 9988766543
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.30 E-value=6.2e-05 Score=60.68 Aligned_cols=43 Identities=28% Similarity=0.743 Sum_probs=35.1
Q ss_pred ccccccccccccccCceecCCCCc-ccHHHHHHHHHhhhccCCcccccccccccccccCh
Q 009562 58 TVMCDICMEEVAGDKATKMDCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 116 (532)
Q Consensus 58 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~ 116 (532)
...|+||++... +++.++|||. ||..|+..+ ..||. |...+..
T Consensus 18 ~~~C~IC~~~~~--~~v~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEI--NSTFCPCGHTVCCESCAAQL------------QSCPV--CRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBC--CEEEETTCBCCBCHHHHTTC------------SBCTT--TCCBCCE
T ss_pred CCEeEEeCcccC--cEEEECCCCHHHHHHHHHhc------------CcCCC--CCchhhC
Confidence 568999999865 7888899999 999998754 28998 8887654
No 64
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.30 E-value=0.0002 Score=57.86 Aligned_cols=52 Identities=21% Similarity=0.357 Sum_probs=41.6
Q ss_pred ccccccccccccccccCceecCCC-----CcccHHHHHHHHHhhhccCCcccccccccccccccC
Q 009562 56 SSTVMCDICMEEVAGDKATKMDCG-----HCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 115 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~~~~l~Cg-----H~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 115 (532)
+....|.||++++..++...++|+ |.|+.+|+..|+... + ...||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~---~---~~~Cpl--Cr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS---D---TRCCEL--CKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH---C---CSBCSS--SCCBCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC---C---CCCCCC--CCCeee
Confidence 345789999999876666678996 999999999999863 1 368999 887664
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.23 E-value=0.0002 Score=55.93 Aligned_cols=44 Identities=18% Similarity=0.560 Sum_probs=35.6
Q ss_pred ccccccccccccccccCceecCCCCc-ccHHHHHHHHHhhhccCCcccccccccccccccC
Q 009562 56 SSTVMCDICMEEVAGDKATKMDCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 115 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 115 (532)
.+...|.||++... +++.++|||. ||..|... ...||. |...+.
T Consensus 13 ~~~~~C~IC~~~~~--~~v~~pCgH~~~C~~C~~~------------~~~CP~--CR~~i~ 57 (68)
T 2ea5_A 13 ENSKDCVVCQNGTV--NWVLLPCRHTCLCDGCVKY------------FQQCPM--CRQFVQ 57 (68)
T ss_dssp CCSSCCSSSSSSCC--CCEETTTTBCCSCTTHHHH------------CSSCTT--TCCCCC
T ss_pred CCCCCCCCcCcCCC--CEEEECCCChhhhHHHHhc------------CCCCCC--CCcchh
Confidence 45678999999855 7888999999 99999983 147998 887664
No 66
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.20 E-value=0.00017 Score=55.40 Aligned_cols=48 Identities=19% Similarity=0.414 Sum_probs=36.6
Q ss_pred ccccccccccccccccCceec--CCCCc-ccHHHHHHHHHhhhccCCcccccccccccccccC
Q 009562 56 SSTVMCDICMEEVAGDKATKM--DCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 115 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~~~~l--~CgH~-fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 115 (532)
+....|.||++... +++.+ +|||. ||..|...++.. + -.||. |...+.
T Consensus 5 ~~~~~C~IC~~~~~--~~~~~~~pCgH~~~C~~C~~~~~~~----~----~~CPi--CR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPR--DGNIIHGRTGHLVTCFHCARRLKKA----G----ASCPI--CKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBS--CEEEEETTEEEEEECHHHHHHHHHT----T----CBCTT--TCCBCC
T ss_pred CcCCCCcccCCcCC--CeEEEecCCCCHhHHHHHHHHHHHh----C----CcCCC--cCchhh
Confidence 34678999999754 55555 99998 999999987653 1 47998 887663
No 67
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=97.12 E-value=0.00022 Score=58.41 Aligned_cols=49 Identities=22% Similarity=0.436 Sum_probs=40.1
Q ss_pred ccCCCCCCcceeecCCCCeeEec-cCceeecccccccCCCCCccccCCccccCcc
Q 009562 218 TKPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGATGRDHTWSRIAGHSCGRYK 271 (532)
Q Consensus 218 tK~CPkC~~~IEKn~GCnhMtC~-C~~~FCw~C~~~~~~~H~w~~h~g~~C~~~~ 271 (532)
.+-||.|...+....+-..++|. |++.||+.|..+|... |.+..|..|+
T Consensus 25 ~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~-----H~~~sC~~~~ 74 (86)
T 2ct7_A 25 FLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQ-----HRGRSCEDFQ 74 (86)
T ss_dssp EECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTT-----TTTSCHHHHH
T ss_pred EeECcCCCchheecCCCCceEeCCCCCccccccCCchhhc-----CCCCChHHHH
Confidence 45699999999888888889995 9999999999996443 4567787664
No 68
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.96 E-value=0.00039 Score=59.21 Aligned_cols=49 Identities=20% Similarity=0.337 Sum_probs=36.9
Q ss_pred ccccccccccccccc----------------CceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccC
Q 009562 57 STVMCDICMEEVAGD----------------KATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 115 (532)
Q Consensus 57 ~~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 115 (532)
...+|.||++.+... ..+.++|+|.|+..|+..|+.. ...||. |...+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--------~~~CP~--Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPL--DNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--------CSBCSS--SCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--------CCcCcC--CCCcce
Confidence 346799999987632 1344699999999999999874 257998 887653
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.55 E-value=0.00048 Score=70.75 Aligned_cols=43 Identities=26% Similarity=0.755 Sum_probs=35.7
Q ss_pred cccccccccccccccCceecCCCCc-ccHHHHHHHHHhhhccCCcccccccccccccccC
Q 009562 57 STVMCDICMEEVAGDKATKMDCGHC-FCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 115 (532)
Q Consensus 57 ~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 115 (532)
+...|+||++.+. +++.++|||. ||..|+..+ ..||. |+..+.
T Consensus 294 ~~~~C~IC~~~~~--~~v~lpCgH~~fC~~C~~~~------------~~CP~--CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEV--SVVFIPCGHLVVCQECAPSL------------RKCPI--CRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBC--CEEEETTCCEEECTTTGGGC------------SBCTT--TCCBCC
T ss_pred CCCCCCccCCcCC--ceEEcCCCChhHhHHHHhcC------------CcCCC--CCCCcc
Confidence 4578999999865 8888999999 999998754 47998 887664
No 70
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=96.45 E-value=0.0012 Score=53.17 Aligned_cols=37 Identities=32% Similarity=0.640 Sum_probs=33.7
Q ss_pred ccCCCC--CCcceeecCCCCeeEe------ccCceeecccccccC
Q 009562 218 TKPCPK--CHKPVEKNGGCNLVSC------ICGQAFCWLCGGATG 254 (532)
Q Consensus 218 tK~CPk--C~~~IEKn~GCnhMtC------~C~~~FCw~C~~~~~ 254 (532)
.+-||. |+..|....+...++| .|++.||+.|+.+|+
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYH 69 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcccc
Confidence 588998 9999998889999999 799999999999963
No 71
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.27 E-value=0.00069 Score=58.72 Aligned_cols=48 Identities=21% Similarity=0.359 Sum_probs=0.4
Q ss_pred cccccccccccccc--------------C--ceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccC
Q 009562 58 TVMCDICMEEVAGD--------------K--ATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 115 (532)
Q Consensus 58 ~~~C~IC~e~~~~~--------------~--~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 115 (532)
.-+|.||++++... + ++.++|+|.|+..|+..|+.. .-.||. |...+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--------~~~CP~--Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPL--DNREWE 111 (117)
T ss_dssp C-------------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--------CCcCCC--CCCeee
Confidence 46899999997531 1 122489999999999999876 247998 887653
No 72
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=95.97 E-value=0.003 Score=48.09 Aligned_cols=48 Identities=10% Similarity=0.042 Sum_probs=37.6
Q ss_pred ccccccccccccccCceec-CCCCcccHHHHHHHHHhhhccCCcccccccccccccccChH
Q 009562 58 TVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 117 (532)
Q Consensus 58 ~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 117 (532)
.+.|+|+++.+. +++.+ ++||.|++.|+..|+... | .||. .+..+...
T Consensus 3 ~~~CpIs~~~m~--dPV~~~~sG~~yer~~I~~~l~~~---~-----~cP~--t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKDT---G-----NDPI--TNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCS--SEEEETTTTEEEEHHHHHHHHHHH---S-----BCTT--TCCBCCGG
T ss_pred eEEecCCCCCCC--CCEEeCCCCcEEcHHHHHHHHHhC---C-----CCcC--CcCCCChh
Confidence 478999999966 88888 999999999999999752 2 3888 55555443
No 73
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.81 E-value=0.0061 Score=61.86 Aligned_cols=60 Identities=17% Similarity=0.362 Sum_probs=42.7
Q ss_pred ccccccccccccccc-cCce-----ecCCCCcccHHHHHHHHHhhhccCCcccc---cccccccccccChH
Q 009562 56 SSTVMCDICMEEVAG-DKAT-----KMDCGHCFCNDCWTEHFIVKINEGQSKRI---RCMAHKCNAICDEA 117 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~-~~~~-----~l~CgH~fC~~C~~~yl~~~i~~g~~~~i---~CP~~~C~~~~~~~ 117 (532)
....+|+||++.+.. ..+. ...|+|.|...|+..|+...-...+++.+ .||. |+..++-.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPy--Cr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF--CKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTT--TCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCC--CCCcCCcc
Confidence 356789999998654 2221 24799999999999999876544333332 7997 99877543
No 74
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.48 E-value=0.0077 Score=47.74 Aligned_cols=50 Identities=22% Similarity=0.482 Sum_probs=37.5
Q ss_pred cccccccccccccccCceecCCCCcccHHHHHHHHHhhhccCCcccccccccccccccC
Q 009562 57 STVMCDICMEEVAGDKATKMDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 115 (532)
Q Consensus 57 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 115 (532)
...+|.||++.+.... .-..|+|.|...|+..||... ..-.||. |+..+.
T Consensus 14 ~i~~C~IC~~~i~~g~-~C~~C~h~fH~~Ci~kWl~~~------~~~~CP~--Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQ-SCETCGIRMHLPCVAKYFQSN------AEPRCPH--CNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSE-ECSSSCCEECHHHHHHHSTTC------SSCCCTT--TCSCCC
T ss_pred CCCcCcchhhHcccCC-ccCCCCchhhHHHHHHHHHhc------CCCCCCC--CcCcCC
Confidence 4578999999986432 222899999999999999752 1257998 887654
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.77 E-value=0.0099 Score=49.50 Aligned_cols=68 Identities=21% Similarity=0.416 Sum_probs=44.6
Q ss_pred eeeee-cCCCeeecCcccCCCCCCChhhhHHHHhhhhchHHHHHHHHcCccCCCCC-CcceeecCCCCeeEec-cCceee
Q 009562 170 CEVEC-ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKC-HKPVEKNGGCNLVSCI-CGQAFC 246 (532)
Q Consensus 170 ~~v~C-~C~~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC-~~~IEKn~GCnhMtC~-C~~~FC 246 (532)
+...| .|+++||..|...+|....-...+.......+. ......|+.+ +.+++ ++|. |+..+|
T Consensus 17 av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~-------~~~~~~C~~H~~e~l~-------~fC~~~~~~iC 82 (101)
T 2jun_A 17 AVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDS-------HIRGLMCLEHEDEKVN-------MYCVTDDQLIC 82 (101)
T ss_dssp CCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSC-------CSSCCCCSSCSSSCCC-------EEETTTTEEEC
T ss_pred ceEECCcCChHHhHHHCHHHhccCCccCCCeeecccccc-------CccCCcCcCcCCCcce-------EECCCCCCccc
Confidence 45689 599999999998777632211222221111100 0123579999 58888 9995 999999
Q ss_pred ccccc
Q 009562 247 WLCGG 251 (532)
Q Consensus 247 w~C~~ 251 (532)
+.|..
T Consensus 83 ~~C~~ 87 (101)
T 2jun_A 83 ALCKL 87 (101)
T ss_dssp HHHHH
T ss_pred hhcCC
Confidence 99985
No 76
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=92.39 E-value=0.093 Score=37.11 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=28.6
Q ss_pred ccccCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 009562 2 ELLSLREHHARTLLIHYRWDVEKLLAVLVEN 32 (532)
Q Consensus 2 ~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 32 (532)
++.|.++..|+.+|..++||.+..++.|++.
T Consensus 14 ~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~ 44 (46)
T 1v92_A 14 AVTGAEEDRARFFLESAGWDLQIALASFYED 44 (46)
T ss_dssp HHTCCCHHHHHHHHHHTTSCSHHHHHHHHHT
T ss_pred HHhCcCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 5788999999999999999999999999964
No 77
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=92.36 E-value=0.091 Score=43.69 Aligned_cols=44 Identities=27% Similarity=0.561 Sum_probs=29.1
Q ss_pred ccccccccccccCcee-cCCCCcccHHHHHHHHHhhhccCCccccccccccccccc
Q 009562 60 MCDICMEEVAGDKATK-MDCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 114 (532)
Q Consensus 60 ~C~IC~e~~~~~~~~~-l~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~ 114 (532)
-|++|--.+. ...+ ++|.|.||.+|...+..... -.||. |...+
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~-------k~Cp~--C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGD-------KMCPG--CSDPV 47 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTC-------CBCTT--TCCBC
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccC-------CCCcC--cCCee
Confidence 3777855433 3334 49999999999999876421 25665 66544
No 78
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=92.33 E-value=0.12 Score=38.98 Aligned_cols=49 Identities=20% Similarity=0.544 Sum_probs=35.9
Q ss_pred cccccccccccccccCceecCCC--C---cccHHHHHHHHHhhhccCCcccccccccccccccC
Q 009562 57 STVMCDICMEEVAGDKATKMDCG--H---CFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICD 115 (532)
Q Consensus 57 ~~~~C~IC~e~~~~~~~~~l~Cg--H---~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~ 115 (532)
+...|.||+++.. +...+||. | .|..+|+..|+..+ + ...||. |+..+.
T Consensus 5 ~~~~CrIC~~~~~--~~l~~PC~C~gs~~~~H~~Cl~~W~~~~---~---~~~C~~--C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELG--NERFRACGCTGELENVHRSCLSTWLTIS---R---NTACQI--CGVVYN 58 (60)
T ss_dssp SCCEETTTTEECS--CCCCCSCCCSSGGGSCCHHHHHHHHHHH---T---CSBCTT--TCCBCC
T ss_pred CCCEeEEeecCCC--CceecCcCCCCchhhhHHHHHHHHHHhC---C---CCccCC--CCCeee
Confidence 4568999999843 33456754 4 89999999999863 2 368998 887653
No 79
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.09 E-value=0.064 Score=44.46 Aligned_cols=32 Identities=28% Similarity=0.841 Sum_probs=24.9
Q ss_pred ccccccccccccccCcee--cCCCCcccHHHHHHH
Q 009562 58 TVMCDICMEEVAGDKATK--MDCGHCFCNDCWTEH 90 (532)
Q Consensus 58 ~~~C~IC~e~~~~~~~~~--l~CgH~fC~~C~~~y 90 (532)
...|+||.+.+.. +++. +.|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~-~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQ-DAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCC-BCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCC-CceEECCcCChHHhHHHCHHH
Confidence 5789999976322 3444 799999999999983
No 80
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=91.56 E-value=0.24 Score=39.20 Aligned_cols=67 Identities=22% Similarity=0.447 Sum_probs=46.9
Q ss_pred cccccccccccccccccCceecC--CCCcccHHHHHHHHHhhhccCCcccccccc-ccccc-------ccChHHHHHHhc
Q 009562 55 LSSTVMCDICMEEVAGDKATKMD--CGHCFCNDCWTEHFIVKINEGQSKRIRCMA-HKCNA-------ICDEAVVRNLVS 124 (532)
Q Consensus 55 ~~~~~~C~IC~e~~~~~~~~~l~--CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~-~~C~~-------~~~~~~i~~ll~ 124 (532)
......|.+|-+-+..+.++..+ =.|.||..|-+.+|..+-..+ .+.||. .+|.. .+....|..+|.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~---EvyCPSG~kCpL~gS~~PWAFmqgEIatILg 88 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATG---EVYCPSGEKCPLVGSNVPWAFMQGEIATILS 88 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSS---CCCCTTSSCCBCSSSSSBCCCCHHHHHHHHS
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCC---cEECCCCCccccCCCcCchHHHhhHHHHHhc
Confidence 45678999999998766666553 369999999999999876544 477775 24553 134455666665
No 81
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=89.26 E-value=0.15 Score=38.54 Aligned_cols=37 Identities=32% Similarity=0.768 Sum_probs=29.4
Q ss_pred ccccCCCCCCCCceEEeccccceeeeec---CCCeeecCcccCC
Q 009562 148 MVKWCPSTPHCGNAIRVEEVEVCEVECA---CGAQFCFSCLSEA 188 (532)
Q Consensus 148 ~~~~CP~~p~C~~~i~~~~~~~~~v~C~---C~~~fC~~C~~~~ 188 (532)
+.+.|| .|+..|...+ .-..++|. |++.||+.|+.+|
T Consensus 5 ~~k~CP---~C~~~Iek~~-GCnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 5 NTKECP---KCHVTIEKDG-GCNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCCCT---TTCCCCSSCC-SCCSSSCCSSGGGSCCSSSSCSCS
T ss_pred cceECc---CCCCeeEeCC-CCCcEEECCCCcCCEEeeCcCCCc
Confidence 457898 7998887544 44568995 9999999999876
No 82
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.44 E-value=0.28 Score=37.25 Aligned_cols=32 Identities=9% Similarity=0.205 Sum_probs=29.1
Q ss_pred CccccCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 009562 1 MELLSLREHHARTLLIHYRWDVEKLLAVLVEN 32 (532)
Q Consensus 1 ~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 32 (532)
|.|.+.++..|+.+|..++||++..++.||+.
T Consensus 23 ~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~ 54 (62)
T 2dal_A 23 TTITGASESVGKHMLEACNNNLEMAVTMFLDG 54 (62)
T ss_dssp HHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred HHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 45788999999999999999999999999974
No 83
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.00 E-value=0.56 Score=36.13 Aligned_cols=31 Identities=16% Similarity=0.305 Sum_probs=27.8
Q ss_pred cccc-CCHHHHHHHHHHcCCChHHHHHHHHhc
Q 009562 2 ELLS-LREHHARTLLIHYRWDVEKLLAVLVEN 32 (532)
Q Consensus 2 ~~l~-i~~~~a~~LL~~~~W~~~~l~~~~~~~ 32 (532)
.|.| .++..|+.+|..++||.+..++.||+.
T Consensus 27 ~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~ 58 (67)
T 2dam_A 27 DLTGIESMDQCRHTLEQHNWNIEAAVQDRLNE 58 (67)
T ss_dssp HHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHS
T ss_pred HHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4667 789999999999999999999999974
No 84
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=83.93 E-value=0.36 Score=36.28 Aligned_cols=32 Identities=31% Similarity=0.800 Sum_probs=23.0
Q ss_pred cCCCeeecCcccCCCCCCChhhhHHHHhhhhchHHHHHHHHcCccCCCCCCcceeec
Q 009562 175 ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEKN 231 (532)
Q Consensus 175 ~C~~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IEKn 231 (532)
+||+.||..|... |. ..+...||.|+.++.++
T Consensus 25 ~CgH~fC~~Ci~~------------~~-------------~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 25 VCGHTLCESCVDL------------LF-------------VRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCCEEHHHHHH------------HH-------------HTTSSSCTTTCCCCSSC
T ss_pred CCCCHhHHHHHHH------------HH-------------HcCCCcCCCCCCccccc
Confidence 6999999998643 21 11236899999998753
No 85
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=80.13 E-value=0.92 Score=37.67 Aligned_cols=48 Identities=31% Similarity=0.768 Sum_probs=32.3
Q ss_pred cCCCCCCCCceEEeccccceeeee-cCCCeeecCcccCCCCCCChhhhHHHHhhhhchHHHHHHHHcCccCCCCCCccee
Q 009562 151 WCPSTPHCGNAIRVEEVEVCEVEC-ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVE 229 (532)
Q Consensus 151 ~CP~~p~C~~~i~~~~~~~~~v~C-~C~~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IE 229 (532)
+|+ .|+..|..-+ .- ||++.||..|-.. |.....+.||.|+.+|.
T Consensus 3 fC~---~C~~Pi~iyg------RmIPCkHvFCydCa~~-------------------------~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCD---KCGLPIKVYG------RMIPCKHVFCYDCAIL-------------------------HEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCT---TTCSBCSEEE------EEETTCCEEEHHHHHH-------------------------HHHTTCCBCTTTCCBCS
T ss_pred ecC---ccCCCeEEEe------eeccccccHHHHHHHH-------------------------HHhccCCCCcCcCCeee
Confidence 566 5776665322 22 7999999998542 22234489999999998
Q ss_pred ecC
Q 009562 230 KNG 232 (532)
Q Consensus 230 Kn~ 232 (532)
+.+
T Consensus 49 rVe 51 (101)
T 3vk6_A 49 RIE 51 (101)
T ss_dssp EEE
T ss_pred eeE
Confidence 543
No 86
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.89 E-value=0.95 Score=34.75 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=28.4
Q ss_pred ccccCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 009562 2 ELLSLREHHARTLLIHYRWDVEKLLAVLVEN 32 (532)
Q Consensus 2 ~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 32 (532)
.+.|.++..|+..|..++||.+..++.|++.
T Consensus 26 ~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~ 56 (66)
T 2dzl_A 26 LAAGCAADQAKQLLQAAHWQFETALSTFFQE 56 (66)
T ss_dssp HHHCCCHHHHHHHHHTTTTCHHHHHHHHHTC
T ss_pred HHcCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 5678999999999999999999999999963
No 87
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=79.73 E-value=0.63 Score=36.01 Aligned_cols=38 Identities=26% Similarity=0.491 Sum_probs=29.5
Q ss_pred cCCCCCCcceeecCCCCeeEec-cCceeecccccccCCCCCccccCCccccCcc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGATGRDHTWSRIAGHSCGRYK 271 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~-C~~~FCw~C~~~~~~~H~w~~h~g~~C~~~~ 271 (532)
..|+.++.+++ ++|. |+...|+.|... .|.+|......
T Consensus 19 ~~C~~H~e~l~-------lfC~~d~~~iC~~C~~~--------~H~~H~~~~l~ 57 (72)
T 2csv_A 19 RKCPVHGKTME-------LFCQTDQTCICYLCMFQ--------EHKNHSTVTVE 57 (72)
T ss_dssp CBCTTTCCBCC-------EEESSSCCEECHHHHHT--------TTSSSCEEEHH
T ss_pred CcCcccCCceE-------EEeCCCCeEEccccCCC--------CCCCCCEecHH
Confidence 68999999998 9995 999999999753 34566554433
No 88
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=79.33 E-value=0.89 Score=32.86 Aligned_cols=27 Identities=26% Similarity=0.723 Sum_probs=24.1
Q ss_pred cCCCCCCcceeecCCCCeeEec-cCceeecccccc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGA 252 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~-C~~~FCw~C~~~ 252 (532)
..|+.++.+++ ++|. |+...|+.|...
T Consensus 9 ~~C~~H~e~l~-------lfC~~d~~~iC~~C~~~ 36 (53)
T 2did_A 9 SLCPQHHEALS-------LFCYEDQEAVCLICAIS 36 (53)
T ss_dssp CBCTTTCCBCC-------EEESSSCSEECHHHHTS
T ss_pred CcChhhCCeee-------EEeCCCCeEEeccccCC
Confidence 58999999999 9995 999999999863
No 89
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=78.27 E-value=0.55 Score=41.10 Aligned_cols=32 Identities=34% Similarity=0.816 Sum_probs=23.2
Q ss_pred eeecCCCeeecCcccCCCCCCChhhhHHHHhhhhchHHHHHHHHcCccCCCCCCccee
Q 009562 172 VECACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVE 229 (532)
Q Consensus 172 v~C~C~~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IE 229 (532)
+.-+||+.||..|...| .. ....||.|+.+|.
T Consensus 67 ~~~~CgH~fc~~Ci~~~------------~~--------------~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 67 VTLNCAHSFCSYCINEW------------MK--------------RKIECPICRKDIK 98 (138)
T ss_dssp EEETTSCEEEHHHHHHH------------TT--------------TCSBCTTTCCBCC
T ss_pred eECCCCCCccHHHHHHH------------HH--------------cCCcCCCCCCcCC
Confidence 45589999999996532 21 1257999999886
No 90
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=78.25 E-value=1.1 Score=43.29 Aligned_cols=50 Identities=22% Similarity=0.491 Sum_probs=37.7
Q ss_pred cccccccccccccccCceec-CCCCcccHHHHHHHHHhhhccCCcccccccccccccccCh
Q 009562 57 STVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDE 116 (532)
Q Consensus 57 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~ 116 (532)
....|.||.+.+... ... .|+|.|...|+..|+... ....||. |+..++.
T Consensus 179 ~i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~------~~~~CP~--C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSN------AEPRCPH--CNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTC------SSCBCTT--TCCBCCS
T ss_pred CCCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhC------CCCCCCC--CCCCCCC
Confidence 356899999997632 333 499999999999998751 2368997 8887654
No 91
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=77.42 E-value=1.4 Score=30.08 Aligned_cols=27 Identities=19% Similarity=0.596 Sum_probs=23.9
Q ss_pred cCCCCCCcceeecCCCCeeEec-cCceeecccccc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGA 252 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~-C~~~FCw~C~~~ 252 (532)
+.|+.++.+++ ++|. |+...|+.|...
T Consensus 4 ~~C~~H~e~l~-------lfC~~d~~~iC~~C~~~ 31 (42)
T 1fre_A 4 EKCSEHDERLK-------LYCKDDGTLSCVICRDS 31 (42)
T ss_dssp CCCCSSCSSCC-------CCCCSSSSSSCCTTSSC
T ss_pred ccchhhCCeee-------EEeCCCCeEEeccCCCC
Confidence 57999999988 9995 999999999863
No 92
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.70 E-value=0.67 Score=34.80 Aligned_cols=32 Identities=28% Similarity=0.846 Sum_probs=23.0
Q ss_pred cCCCeeecCcccCCCCCCChhhhHHHHhhhhchHHHHHHHHcCccCCCCCCcceeec
Q 009562 175 ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEKN 231 (532)
Q Consensus 175 ~C~~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IEKn 231 (532)
+||+.||..|...| . ......||.|+.++..+
T Consensus 32 ~CgH~fC~~Ci~~~------------~-------------~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 32 ECGHRFCESCMAAL------------L-------------SSSSPKCTACQESIVKD 63 (66)
T ss_dssp SSSCCCCHHHHHHH------------H-------------TTSSCCCTTTCCCCCTT
T ss_pred CCCCHHHHHHHHHH------------H-------------HhCcCCCCCCCcCCChh
Confidence 79999999986532 2 12236899999998743
No 93
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.38 E-value=1.2 Score=34.37 Aligned_cols=33 Identities=27% Similarity=0.862 Sum_probs=24.5
Q ss_pred cCCCeeecCcccCCCCCCChhhhHHHHhhhhchHHHHHHHHcCccCCCCCCcceeecCC
Q 009562 175 ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGG 233 (532)
Q Consensus 175 ~C~~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IEKn~G 233 (532)
+|++.||..|... |.. .+ ..||.|+..+....|
T Consensus 43 ~C~H~fh~~Ci~~------------w~~-------------~~-~~CP~Cr~~~~~~~g 75 (75)
T 1x4j_A 43 PCNHEFHAKCVDK------------WLK-------------AN-RTCPICRADSGPSSG 75 (75)
T ss_dssp TTTEEEETTHHHH------------HHH-------------HC-SSCTTTCCCCCCCCC
T ss_pred CCCCHhHHHHHHH------------HHH-------------cC-CcCcCcCCcCCCCCC
Confidence 7999999998653 321 11 589999999987665
No 94
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.28 E-value=1.1 Score=33.25 Aligned_cols=27 Identities=26% Similarity=0.813 Sum_probs=24.1
Q ss_pred cCCCCCCcceeecCCCCeeEec-cCceeecccccc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGA 252 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~-C~~~FCw~C~~~ 252 (532)
..|+.++.+++ ++|. |+...|+.|...
T Consensus 15 ~~C~~H~e~L~-------lfC~~d~~~iC~~C~~s 42 (59)
T 2yrg_A 15 DHCARHGEKLL-------LFCQEDGKVICWLCERS 42 (59)
T ss_dssp SBCTTTCCBCC-------EEETTTCSEECHHHHTS
T ss_pred ccChhhCceee-------eecCCCCcEEecccCCC
Confidence 57999999998 9995 999999999863
No 95
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=75.80 E-value=0.49 Score=37.48 Aligned_cols=51 Identities=27% Similarity=0.728 Sum_probs=30.9
Q ss_pred ccCCCCCCCCceEEeccccceeeeecCCCeeecCcccCCCCCCChhhhHHHHhhhhchHHHHHHHHcCccCCCCCCccee
Q 009562 150 KWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVE 229 (532)
Q Consensus 150 ~~CP~~p~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IE 229 (532)
..|| -|-..+...+ .....|+||+.||..|...+ |. .....||.|+.++.
T Consensus 12 ~~Cp---ICle~~~~~d--~~~~p~~CGH~fC~~Cl~~~-----------~~--------------~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 12 VECP---LCMEPLEIDD--INFFPCTCGYQICRFCWHRI-----------RT--------------DENGLCPACRKPYP 61 (78)
T ss_dssp CBCT---TTCCBCCTTT--TTCCSSTTSCCCCHHHHHHH-----------TT--------------SSCSBCTTTCCBCS
T ss_pred CcCC---ccCccCcccc--ccccccCCCCCcCHHHHHHH-----------Hh--------------cCCCCCCCCCCccC
Confidence 4677 4654332111 22345789999999997532 10 01268999999987
Q ss_pred e
Q 009562 230 K 230 (532)
Q Consensus 230 K 230 (532)
+
T Consensus 62 ~ 62 (78)
T 1e4u_A 62 E 62 (78)
T ss_dssp S
T ss_pred C
Confidence 3
No 96
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=75.19 E-value=1.1 Score=31.97 Aligned_cols=27 Identities=26% Similarity=0.559 Sum_probs=23.8
Q ss_pred cCCCCC-CcceeecCCCCeeEec-cCceeecccccc
Q 009562 219 KPCPKC-HKPVEKNGGCNLVSCI-CGQAFCWLCGGA 252 (532)
Q Consensus 219 K~CPkC-~~~IEKn~GCnhMtC~-C~~~FCw~C~~~ 252 (532)
..|+.+ +.+++ ++|. |+..+|+.|...
T Consensus 7 ~~C~~H~~e~l~-------lfC~~~~~~iC~~C~~~ 35 (50)
T 2yvr_A 7 VYCNVHKHEPLV-------LFCESCDTLTCRDCQLN 35 (50)
T ss_dssp CBCSSSTTCBCC-------EEETTTTEEECHHHHHT
T ss_pred CcCcCCCCCCEE-------EEeCCCCEEEecccCCC
Confidence 579999 88998 9995 999999999763
No 97
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=74.53 E-value=2.2 Score=34.03 Aligned_cols=33 Identities=36% Similarity=0.917 Sum_probs=20.4
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCc-----eeeccccccc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSC-ICGQ-----AFCWLCGGAT 253 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC-~C~~-----~FCw~C~~~~ 253 (532)
..||.|+.+|+.++| +..| .|+. -||-.|+.+.
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~~C~~~~~~~afCPeCgq~L 41 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCETCAKDFSLQALCPDCRQPL 41 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECTTTCCEEEEEEECSSSCSCC
T ss_pred CCCCCCCCccccCCC--ceECccccccCCCcccCcchhhHH
Confidence 467777777777666 4456 3662 3566666653
No 98
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=74.24 E-value=1.5 Score=37.08 Aligned_cols=31 Identities=29% Similarity=0.665 Sum_probs=19.8
Q ss_pred ccCCCCCCCCceEEeccccceeeeecCCCeeecCcccCC
Q 009562 150 KWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLSEA 188 (532)
Q Consensus 150 ~~CP~~p~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~ 188 (532)
..|| -|...+. .+.+..+||+.||..|...|
T Consensus 23 ~~C~---IC~~~~~-----~pv~~~~CgH~fC~~Ci~~~ 53 (117)
T 1jm7_B 23 LRCS---RCTNILR-----EPVCLGGCEHIFCSNCVSDC 53 (117)
T ss_dssp TSCS---SSCSCCS-----SCBCCCSSSCCBCTTTGGGG
T ss_pred CCCC---CCChHhh-----CccEeCCCCCHHHHHHHHHH
Confidence 3687 4654442 12223379999999998754
No 99
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=71.87 E-value=2.5 Score=30.15 Aligned_cols=29 Identities=24% Similarity=0.629 Sum_probs=21.3
Q ss_pred CccCCCCCCc-ceeecCCCCeeEec-cCcee
Q 009562 217 HTKPCPKCHK-PVEKNGGCNLVSCI-CGQAF 245 (532)
Q Consensus 217 ~tK~CPkC~~-~IEKn~GCnhMtC~-C~~~F 245 (532)
+...||.|+. .|.-+..=..+.|. ||..|
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 3468999998 88766665668884 87655
No 100
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=71.82 E-value=1.4 Score=31.06 Aligned_cols=26 Identities=19% Similarity=0.688 Sum_probs=22.9
Q ss_pred cCCCCCC-cceeecCCCCeeEec-cCceeeccccc
Q 009562 219 KPCPKCH-KPVEKNGGCNLVSCI-CGQAFCWLCGG 251 (532)
Q Consensus 219 K~CPkC~-~~IEKn~GCnhMtC~-C~~~FCw~C~~ 251 (532)
..|+.+. .+++ ++|. |+...||.|..
T Consensus 7 ~~C~~H~~e~l~-------lfC~~d~~~iC~~C~~ 34 (48)
T 3ddt_A 7 PMCKEHEDEKIN-------IYCLTCEVPTCSMCKV 34 (48)
T ss_dssp CBCSSSTTSBCC-------EEETTTTEEECHHHHH
T ss_pred CcCCCCCCcccc-------EEcCCCCeeEcccccC
Confidence 5799999 8888 9995 99999999974
No 101
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=71.64 E-value=1 Score=36.99 Aligned_cols=30 Identities=20% Similarity=0.522 Sum_probs=25.2
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCceeeccccccc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGAT 253 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC-~C~~~FCw~C~~~~ 253 (532)
-.||-|...+. +-++| .|||.||+.|...|
T Consensus 23 ~~C~IC~~~~~-----~p~~~~~CgH~FC~~Ci~~~ 53 (100)
T 3lrq_A 23 FRCFICMEKLR-----DARLCPHCSKLCCFSCIRRW 53 (100)
T ss_dssp TBCTTTCSBCS-----SEEECTTTCCEEEHHHHHHH
T ss_pred CCCccCCcccc-----CccccCCCCChhhHHHHHHH
Confidence 47999998886 35777 59999999999886
No 102
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=70.90 E-value=1.1 Score=31.69 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=24.2
Q ss_pred ccccCCH-HHHHHHHHHcCCChHHHHHHHH
Q 009562 2 ELLSLRE-HHARTLLIHYRWDVEKLLAVLV 30 (532)
Q Consensus 2 ~~l~i~~-~~a~~LL~~~~W~~~~l~~~~~ 30 (532)
+|.|++. +.|+..|-.++||.+..+..|+
T Consensus 14 ~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~ 43 (45)
T 3e21_A 14 ACTGIENIDEAITLLEQNNWDLVAAINGVI 43 (45)
T ss_dssp HHHCCCCHHHHHHHHHHTTTCHHHHHTTC-
T ss_pred HHHCCCCHHHHHHHHHHcCCcHHHHHHHHc
Confidence 4678885 9999999999999998877665
No 103
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=70.89 E-value=2.5 Score=30.72 Aligned_cols=27 Identities=30% Similarity=0.784 Sum_probs=21.7
Q ss_pred cCCCeeecCcccCCCCCCChhhhHHHHhhhhchHHHHHHHHcCccCCCCCCcceee
Q 009562 175 ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEK 230 (532)
Q Consensus 175 ~C~~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IEK 230 (532)
+||+.||..|...+ ...||.|+..+..
T Consensus 23 ~CgH~fC~~Ci~~~-----------------------------~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 23 PCLHTLCSGCLEAS-----------------------------GMQCPICQAPWPL 49 (56)
T ss_dssp TTSCCSBTTTCSSS-----------------------------SSSCSSCCSSSSC
T ss_pred CCCCcccHHHHccC-----------------------------CCCCCcCCcEeec
Confidence 69999999997641 1689999998864
No 104
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=70.14 E-value=2.1 Score=34.43 Aligned_cols=36 Identities=25% Similarity=0.655 Sum_probs=29.2
Q ss_pred CccCCCCCCcceeecCCCCeeEec-cCceeecccccccCC
Q 009562 217 HTKPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGATGR 255 (532)
Q Consensus 217 ~tK~CPkC~~~IEKn~GCnhMtC~-C~~~FCw~C~~~~~~ 255 (532)
..-.||.|+....+..+=..+.|. |++.|- ++.|.+
T Consensus 26 ~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~a---ggay~~ 62 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQGTGIWQCSYCDYKFT---GGSYKP 62 (83)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCCEEE---CCSSSS
T ss_pred ccCcCCCCCCcceeccCCCeEECCCCCCEec---CCEecc
Confidence 346999999999998888899995 999884 566543
No 105
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.49 E-value=1.3 Score=32.83 Aligned_cols=30 Identities=33% Similarity=0.716 Sum_probs=24.3
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeeccccccc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 253 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~ 253 (532)
-.||-|...+.. -++-.|||.||+.|...|
T Consensus 21 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~ 50 (63)
T 2ysj_A 21 VICPICLDILQK-----PVTIDCGHNFCLKCITQI 50 (63)
T ss_dssp CBCTTTCSBCSS-----CEECTTSSEECHHHHHHH
T ss_pred CCCCcCCchhCC-----eEEeCCCCcchHHHHHHH
Confidence 589999987762 355589999999999986
No 106
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=69.44 E-value=2.1 Score=33.85 Aligned_cols=39 Identities=23% Similarity=0.450 Sum_probs=29.3
Q ss_pred cCCCCC-CcceeecCCCCeeEec-cCceeecccccccCCCCCccccCCccccCcc
Q 009562 219 KPCPKC-HKPVEKNGGCNLVSCI-CGQAFCWLCGGATGRDHTWSRIAGHSCGRYK 271 (532)
Q Consensus 219 K~CPkC-~~~IEKn~GCnhMtC~-C~~~FCw~C~~~~~~~H~w~~h~g~~C~~~~ 271 (532)
..||.+ +.+++ ++|. |+...|+.|... . .|.||......
T Consensus 19 ~~C~~H~~e~l~-------lfC~~d~~~iC~~C~~~--~-----~H~~H~~~~l~ 59 (84)
T 2dja_A 19 ITCLDHENEKVN-------MYCVSDDQLICALCKLV--G-----RHRDHQVASLN 59 (84)
T ss_dssp CCCSSCSSSCCC-------EEETTTTEEECHHHHHT--S-----TTTTCCBCCCC
T ss_pred CcCcCcCCcccc-------EEcCCCCceEcccCcCC--C-----CCCCCCccCHH
Confidence 579999 68899 9995 999999999863 1 34556555444
No 107
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=69.35 E-value=3.1 Score=34.77 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=29.2
Q ss_pred CccccCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 009562 1 MELLSLREHHARTLLIHYRWDVEKLLAVLVEN 32 (532)
Q Consensus 1 ~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 32 (532)
|++.|++.+.|+.-|..++||++..++.+++.
T Consensus 47 ~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg 78 (104)
T 1wj7_A 47 IDITGKNQDECVIALHDCNGDVNRAINVLLEG 78 (104)
T ss_dssp HHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 45679999999999999999999999999964
No 108
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=69.35 E-value=2.2 Score=31.47 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=19.7
Q ss_pred CccCCCCCCcceeecCCCCeeEe-ccCcee
Q 009562 217 HTKPCPKCHKPVEKNGGCNLVSC-ICGQAF 245 (532)
Q Consensus 217 ~tK~CPkC~~~IEKn~GCnhMtC-~C~~~F 245 (532)
..+.||+|+..+--...-+.++| +|++.+
T Consensus 17 ~~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 17 KHRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp SSCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred ccccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 35899999984432233468899 598774
No 109
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=68.81 E-value=2.9 Score=28.06 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=23.2
Q ss_pred ccCCHHHHHHHHHHcCCChHHHHHHH
Q 009562 4 LSLREHHARTLLIHYRWDVEKLLAVL 29 (532)
Q Consensus 4 l~i~~~~a~~LL~~~~W~~~~l~~~~ 29 (532)
+|.+.+.|+.-|+..+||++..++.+
T Consensus 14 mGf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 14 MGFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp TTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 38999999999999999999887765
No 110
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=68.42 E-value=3.2 Score=31.96 Aligned_cols=31 Identities=13% Similarity=0.047 Sum_probs=23.8
Q ss_pred ccCCCCCCcceeecCCCCeeEec-cCceeecc
Q 009562 218 TKPCPKCHKPVEKNGGCNLVSCI-CGQAFCWL 248 (532)
Q Consensus 218 tK~CPkC~~~IEKn~GCnhMtC~-C~~~FCw~ 248 (532)
.-.||.|+.+++-+.+...+.|. ||..|=-.
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQDKQELWSRQAKLAYPIK 39 (68)
T ss_dssp CCBCSSSCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEecCC
Confidence 35899999999988888888884 76655433
No 111
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=67.95 E-value=2.7 Score=31.96 Aligned_cols=27 Identities=37% Similarity=0.874 Sum_probs=22.5
Q ss_pred ccCCCCCCcceeecCCCCeeEeccCceeecc
Q 009562 218 TKPCPKCHKPVEKNGGCNLVSCICGQAFCWL 248 (532)
Q Consensus 218 tK~CPkC~~~IEKn~GCnhMtC~C~~~FCw~ 248 (532)
..+|..|++.+... | +.|+|+..||-.
T Consensus 15 ~~rC~~C~kkvgl~-~---f~CrCg~~FC~~ 41 (64)
T 1wfh_A 15 PNRCTVCRKRVGLT-G---FMCRCGTTFCGS 41 (64)
T ss_dssp CCCCTTTCCCCCTT-C---EECSSSCEECTT
T ss_pred CCcChhhCCccCcc-C---EEeecCCEeccc
Confidence 47899999988755 3 889999999975
No 112
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.96 E-value=1.7 Score=33.09 Aligned_cols=31 Identities=32% Similarity=0.738 Sum_probs=24.7
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeecccccccC
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 254 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~~ 254 (532)
..||-|...+. +-++-.|||.||+.|...|-
T Consensus 21 ~~C~IC~~~~~-----~~~~~~CgH~fC~~Ci~~~~ 51 (73)
T 2ysl_A 21 VICPICLDILQ-----KPVTIDCGHNFCLKCITQIG 51 (73)
T ss_dssp CBCTTTCSBCS-----SEEECTTCCEEEHHHHHHHC
T ss_pred CEeccCCcccC-----CeEEcCCCChhhHHHHHHHH
Confidence 58999998776 23455899999999998864
No 113
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=65.19 E-value=3 Score=30.08 Aligned_cols=29 Identities=31% Similarity=0.640 Sum_probs=19.2
Q ss_pred cCccCCCCCCccee-ecCCCCeeEe-ccCcee
Q 009562 216 VHTKPCPKCHKPVE-KNGGCNLVSC-ICGQAF 245 (532)
Q Consensus 216 ~~tK~CPkC~~~IE-Kn~GCnhMtC-~C~~~F 245 (532)
...+.||+|+..+. .+.+ +.+.| +||+.+
T Consensus 17 ~~~k~CP~CG~~~fm~~~~-~R~~C~kCG~t~ 47 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMADHG-DRWACGKCGYTE 47 (50)
T ss_dssp CSSEECSSSCSSCEEEECS-SEEECSSSCCEE
T ss_pred EecccCCCCCCceEEecCC-CeEECCCCCCEE
Confidence 34589999998543 3333 67888 588653
No 114
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=64.84 E-value=1.8 Score=33.42 Aligned_cols=26 Identities=27% Similarity=0.740 Sum_probs=21.8
Q ss_pred cCCCe-eecCcccCCCCCCChhhhHHHHhhhhchHHHHHHHHcCccCCCCCCcceee
Q 009562 175 ACGAQ-FCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEK 230 (532)
Q Consensus 175 ~C~~~-fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IEK 230 (532)
+||+. ||..|...| +.||-|+.+|.+
T Consensus 41 pCgH~~~C~~C~~~~------------------------------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 41 PCGHLVTCKQCAEAV------------------------------DKCPMCYTVITF 67 (74)
T ss_dssp TTCCBCCCHHHHTTC------------------------------SBCTTTCCBCSE
T ss_pred CCCChhHHHHhhhcC------------------------------ccCCCcCcCccC
Confidence 79999 999996643 589999999874
No 115
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=63.70 E-value=2.9 Score=31.17 Aligned_cols=27 Identities=19% Similarity=0.635 Sum_probs=23.7
Q ss_pred cCCCCC-CcceeecCCCCeeEec-cCceeecccccc
Q 009562 219 KPCPKC-HKPVEKNGGCNLVSCI-CGQAFCWLCGGA 252 (532)
Q Consensus 219 K~CPkC-~~~IEKn~GCnhMtC~-C~~~FCw~C~~~ 252 (532)
..||.+ +.+++ ++|. |+...|+.|...
T Consensus 9 ~~C~~H~~e~l~-------lfC~~d~~~iC~~C~~~ 37 (64)
T 2d8u_A 9 PMCKEHEDEKIN-------IYCLTCEVPTCSMCKVF 37 (64)
T ss_dssp CCCSSCTTCCCC-------SEESSSCCCCCSHHHHS
T ss_pred CcCcCcCCCccc-------eEcCcCCceeCccccCC
Confidence 579999 88999 9995 999999999753
No 116
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=63.50 E-value=3.5 Score=31.32 Aligned_cols=27 Identities=37% Similarity=0.860 Sum_probs=22.0
Q ss_pred ccCCCCCCcceeecCCCCeeEeccCceeecc
Q 009562 218 TKPCPKCHKPVEKNGGCNLVSCICGQAFCWL 248 (532)
Q Consensus 218 tK~CPkC~~~IEKn~GCnhMtC~C~~~FCw~ 248 (532)
..+|..|++.+... | +.|+|+..||-.
T Consensus 15 ~~rC~~C~kkvgl~-~---f~CrCg~~FC~~ 41 (64)
T 1wg2_A 15 NNRCFSCNKKVGVM-G---FKCKCGSTFCGS 41 (64)
T ss_dssp SCSCTTTCCCCTTS-C---EECTTSCEECSS
T ss_pred CCcChhhCCccccc-C---eEeecCCEeccc
Confidence 46899999987644 3 789999999974
No 117
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=62.84 E-value=1.3 Score=35.55 Aligned_cols=30 Identities=23% Similarity=0.552 Sum_probs=23.7
Q ss_pred cCCCCCCcceeecCCCCeeEec-cCceeeccccccc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGAT 253 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~-C~~~FCw~C~~~~ 253 (532)
-.||-|...+. +-++-. |||.||..|...|
T Consensus 14 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~ 44 (92)
T 3ztg_A 14 LLCLICKDIMT-----DAVVIPCCGNSYCDECIRTA 44 (92)
T ss_dssp TEETTTTEECS-----SCEECTTTCCEECHHHHHHH
T ss_pred CCCCCCChhhc-----CceECCCCCCHHHHHHHHHH
Confidence 47999997775 335667 9999999999885
No 118
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.97 E-value=1.8 Score=34.12 Aligned_cols=34 Identities=21% Similarity=0.464 Sum_probs=24.1
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeeccccccc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 253 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~ 253 (532)
-.||-|...+..... .-+.-.|||.||+.|...|
T Consensus 16 ~~C~IC~~~~~~~~~-~~~~~~CgH~fC~~Ci~~~ 49 (88)
T 2ct2_A 16 LECPICMESFTEEQL-RPKLLHCGHTICRQCLEKL 49 (88)
T ss_dssp CBCTTTCCBCCTTSS-CEEECSSSCEEEHHHHHHH
T ss_pred CCCccCCccccccCC-CeEECCCCChhhHHHHHHH
Confidence 579999987764321 1233469999999998886
No 119
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=61.67 E-value=1.2e+02 Score=29.41 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcc---cCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 009562 379 EDQQQQLEANVEKLSKFLEEP---FDQYPDDKVMEIRMQVINLSVITDTLCKKM 429 (532)
Q Consensus 379 e~~q~~lE~~~E~L~~~le~~---~~~~~~~~i~~~k~~~~~l~~~~~~~~~~l 429 (532)
+.++..|+..+|+|...|+.- +..-....+..++..+..++.-++.+.++|
T Consensus 168 ~~L~~~l~~~~eeLr~~L~p~ae~lr~~l~~~~e~l~~~l~~~~~~~~qq~e~f 221 (273)
T 3s84_A 168 EELKARISASAEELRQRLAPLAEDVRGNLRGNTEGLQKSLAELGGHLDQQVEEF 221 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344455555555555555411 110011123344555555555555544443
No 120
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=61.63 E-value=5.3 Score=32.82 Aligned_cols=33 Identities=30% Similarity=0.874 Sum_probs=27.4
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCc-----eeeccccccc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSC-ICGQ-----AFCWLCGGAT 253 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC-~C~~-----~FCw~C~~~~ 253 (532)
..||.|+..++.++| +.+| .|+. -+|-.|..+.
T Consensus 33 ~~CP~Cq~eL~~~g~--~~hC~~C~~~f~~~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--HARCRSCGEFIEMKALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEEEETT--EEEETTTCCEEEEEEECTTTCSBC
T ss_pred ccCccCCCcceecCC--EEECccccchhhccccCcchhhHH
Confidence 689999999999988 6779 4885 4699998774
No 121
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=61.42 E-value=2.6 Score=32.36 Aligned_cols=30 Identities=23% Similarity=0.552 Sum_probs=24.0
Q ss_pred cCCCCCCcceeecCCCCeeEec-cCceeeccccccc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGAT 253 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~-C~~~FCw~C~~~~ 253 (532)
-.||-|...+. +-++-. |||.||+.|...|
T Consensus 16 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~ 46 (74)
T 2yur_A 16 LLCLICKDIMT-----DAVVIPCCGNSYCDECIRTA 46 (74)
T ss_dssp GSCSSSCCCCT-----TCEECSSSCCEECTTHHHHH
T ss_pred CCCcCCChHHh-----CCeEcCCCCCHHHHHHHHHH
Confidence 58999988776 345666 9999999999886
No 122
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=61.02 E-value=2.5 Score=35.96 Aligned_cols=30 Identities=20% Similarity=0.473 Sum_probs=22.9
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeeccccccc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 253 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~ 253 (532)
-.||-|...+. +-++-.|||.||..|...|
T Consensus 53 ~~C~IC~~~~~-----~p~~~~CgH~fC~~Ci~~~ 82 (124)
T 3fl2_A 53 FQCICCQELVF-----RPITTVCQHNVCKDCLDRS 82 (124)
T ss_dssp TBCTTTSSBCS-----SEEECTTSCEEEHHHHHHH
T ss_pred CCCCcCChHHc-----CcEEeeCCCcccHHHHHHH
Confidence 47999998776 2344478888999898775
No 123
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=60.66 E-value=4.1 Score=31.82 Aligned_cols=28 Identities=36% Similarity=0.874 Sum_probs=22.8
Q ss_pred CccCCCCCCcceeecCCCCeeEeccCceeecc
Q 009562 217 HTKPCPKCHKPVEKNGGCNLVSCICGQAFCWL 248 (532)
Q Consensus 217 ~tK~CPkC~~~IEKn~GCnhMtC~C~~~FCw~ 248 (532)
...+|..|++.+... | +.|+|+..||-.
T Consensus 24 ~~~RC~~C~kkvgL~-~---f~CrCg~~FCs~ 51 (74)
T 1wfp_A 24 TATRCLSCNKKVGVT-G---FKCRCGSTFCGT 51 (74)
T ss_dssp CCCBCSSSCCBCTTT-C---EECTTSCEECTT
T ss_pred cCccchhhcCccccc-c---eEeccCCEeccc
Confidence 347899999888765 3 899999999964
No 124
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=60.64 E-value=4.3 Score=31.72 Aligned_cols=26 Identities=42% Similarity=0.952 Sum_probs=22.1
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeecc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCICGQAFCWL 248 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~ 248 (532)
.+|..|++.++.. | +.|+|+..||-.
T Consensus 26 nRC~~CrKkvgL~-g---f~CrCg~~FCs~ 51 (74)
T 1wfl_A 26 NRCFMCRKKVGLT-G---FDCRCGNLFCGL 51 (74)
T ss_dssp TBCSSSCCBCGGG-C---EECTTSCEECSS
T ss_pred CcChhhCCccccc-C---eecCCCCEechh
Confidence 5899999998865 3 899999999974
No 125
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.14 E-value=2 Score=31.67 Aligned_cols=27 Identities=26% Similarity=0.660 Sum_probs=24.0
Q ss_pred cCCCCCCcceeecCCCCeeEec-cCceeecccccc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGA 252 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~-C~~~FCw~C~~~ 252 (532)
..|+.++..++ ++|. |+...|+.|...
T Consensus 19 ~~C~~H~e~L~-------lfC~~d~~~iC~~C~~~ 46 (57)
T 2egm_A 19 GICPKHQEALK-------LFCEVDEEAICVVCRES 46 (57)
T ss_dssp SBCTTTCCBCC-------EEETTTTEEECHHHHHS
T ss_pred CcChhhCceee-------EEcCCCCcEEecccCCC
Confidence 57999999999 9995 999999999863
No 126
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=59.98 E-value=2.7 Score=34.77 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=24.3
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCceeeccccccc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGAT 253 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC-~C~~~FCw~C~~~~ 253 (532)
-.||-|...+. +-++. .|||.||+.|...|
T Consensus 16 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~ 46 (108)
T 2ckl_A 16 LMCVLCGGYFI-----DATTIIECLHSFCKTCIVRY 46 (108)
T ss_dssp TBCTTTSSBCS-----SEEEETTTCCEEEHHHHHHH
T ss_pred CCCccCChHHh-----CcCEeCCCCChhhHHHHHHH
Confidence 57999998875 35676 79999999998886
No 127
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.80 E-value=2.4 Score=32.14 Aligned_cols=31 Identities=29% Similarity=0.695 Sum_probs=23.9
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeecccccccC
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 254 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~~ 254 (532)
..||-|...+.. -++-.|||.||+.|...|-
T Consensus 16 ~~C~IC~~~~~~-----~~~~~CgH~fC~~Ci~~~~ 46 (71)
T 2d8t_A 16 PECAICLQTCVH-----PVSLPCKHVFCYLCVKGAS 46 (71)
T ss_dssp CBCSSSSSBCSS-----EEEETTTEEEEHHHHHHCT
T ss_pred CCCccCCcccCC-----CEEccCCCHHHHHHHHHHH
Confidence 579999877642 2555799999999998864
No 128
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=59.71 E-value=4.6 Score=32.48 Aligned_cols=28 Identities=32% Similarity=0.674 Sum_probs=22.4
Q ss_pred ccCCCCCCcceeecCCCCeeEeccCceeecc
Q 009562 218 TKPCPKCHKPVEKNGGCNLVSCICGQAFCWL 248 (532)
Q Consensus 218 tK~CPkC~~~IEKn~GCnhMtC~C~~~FCw~ 248 (532)
..+|..|++.+-...| +.|+||..||-.
T Consensus 25 ~~rC~~C~kkvgl~~~---f~CrCg~~FC~~ 52 (85)
T 1wff_A 25 MKHCFLCGKKTGLATS---FECRCGNNFCAS 52 (85)
T ss_dssp CCBCSSSCCBCSSSSC---EECTTCCEECTT
T ss_pred CccchhhCCeecccCC---eEcCCCCEeccc
Confidence 4689999987765434 899999999964
No 129
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=59.66 E-value=2.2 Score=32.15 Aligned_cols=35 Identities=31% Similarity=0.663 Sum_probs=24.9
Q ss_pred cCCCCCCcceeec--CCCCeeEeccCceeeccccccc
Q 009562 219 KPCPKCHKPVEKN--GGCNLVSCICGQAFCWLCGGAT 253 (532)
Q Consensus 219 K~CPkC~~~IEKn--~GCnhMtC~C~~~FCw~C~~~~ 253 (532)
..||-|...+... +|-.-+.-.|||.||+.|...|
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~ 47 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDS 47 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHH
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHH
Confidence 5799999887653 2322233369999999999886
No 130
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=59.58 E-value=2.8 Score=37.52 Aligned_cols=30 Identities=23% Similarity=0.500 Sum_probs=24.9
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCceeeccccccc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGAT 253 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC-~C~~~FCw~C~~~~ 253 (532)
-.||-|...+.. -++. .|||.||+.|...|
T Consensus 55 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~ 85 (165)
T 2ckl_B 55 LMCPICLDMLKN-----TMTTKECLHRFCADCIITA 85 (165)
T ss_dssp HBCTTTSSBCSS-----EEEETTTCCEEEHHHHHHH
T ss_pred CCCcccChHhhC-----cCEeCCCCChhHHHHHHHH
Confidence 489999988763 5777 79999999999886
No 131
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=58.54 E-value=3.4 Score=31.80 Aligned_cols=31 Identities=16% Similarity=0.054 Sum_probs=23.7
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeecccccccC
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 254 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~~ 254 (532)
-.||-|...+.. -++-.|||.||..|...|-
T Consensus 9 ~~C~IC~~~~~~-----Pv~~~CgH~fc~~Ci~~~~ 39 (78)
T 1t1h_A 9 FRCPISLELMKD-----PVIVSTGQTYERSSIQKWL 39 (78)
T ss_dssp SSCTTTSCCCSS-----EEEETTTEEEEHHHHHHHH
T ss_pred CCCCCccccccC-----CEEcCCCCeecHHHHHHHH
Confidence 479999987752 3555799999999988753
No 132
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=58.40 E-value=6.6 Score=35.19 Aligned_cols=64 Identities=13% Similarity=0.240 Sum_probs=35.7
Q ss_pred ccccccccccccccChHHHHHHhcCCChhHHHHHHHHHHHHhhhcccccccCCCCCCCCceEEecc-ccceeeeecCCCe
Q 009562 101 KRIRCMAHKCNAICDEAVVRNLVSKKHPNLAEKFERFLLESFIEDNKMVKWCPSTPHCGNAIRVEE-VEVCEVECACGAQ 179 (532)
Q Consensus 101 ~~i~CP~~~C~~~~~~~~i~~ll~~~~~e~~eky~~~l~~~~v~~~~~~~~CP~~p~C~~~i~~~~-~~~~~v~C~C~~~ 179 (532)
..+.||..+|+..+....+...+. .-......|| +|+..+.... .......|+-...
T Consensus 81 l~v~C~n~GC~~~~~~~~l~~H~~-------------------~C~~~~v~C~---~C~~~~~r~~l~~H~~~~C~~r~~ 138 (170)
T 3hcs_A 81 LMVKCPNEGCLHKMELRHLEDHQA-------------------HCEFALMDCP---QCQRPFQKFHINIHILKDCPRRQV 138 (170)
T ss_dssp SEEECCSTTCCCEEEGGGHHHHHT-------------------TCTTSEEECT---TTCCEEEGGGHHHHHHHTCTTCEE
T ss_pred cccCCCCCCCCceecHhHHHHHHh-------------------cCCceeeECC---CCChHHHHHHHHHHhhhhCCCCCe
Confidence 568999889998876655544332 1112334676 7888776544 2222234444444
Q ss_pred eecCccc
Q 009562 180 FCFSCLS 186 (532)
Q Consensus 180 fC~~C~~ 186 (532)
.|..|+.
T Consensus 139 ~C~~C~~ 145 (170)
T 3hcs_A 139 SCDNCAA 145 (170)
T ss_dssp ECTTTCC
T ss_pred ECCCCCC
Confidence 4555543
No 133
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=58.07 E-value=3.1 Score=31.96 Aligned_cols=32 Identities=25% Similarity=0.676 Sum_probs=24.0
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeecccccccCC
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGR 255 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~~~ 255 (532)
-.||-|...+.. -++-.|||.||..|...|-.
T Consensus 13 ~~C~IC~~~~~~-----p~~l~CgH~fC~~Ci~~~~~ 44 (79)
T 2egp_A 13 VTCPICLELLTE-----PLSLDCGHSLCRACITVSNK 44 (79)
T ss_dssp CEETTTTEECSS-----CCCCSSSCCCCHHHHSCCCC
T ss_pred CCCcCCCcccCC-----eeECCCCCHHHHHHHHHHHH
Confidence 479999877652 24447999999999988643
No 134
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=57.50 E-value=4.6 Score=30.76 Aligned_cols=34 Identities=29% Similarity=0.667 Sum_probs=25.7
Q ss_pred ccccccccccccccccCceecCC-CCcccHHHHHHHHH
Q 009562 56 SSTVMCDICMEEVAGDKATKMDC-GHCFCNDCWTEHFI 92 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~~~~l~C-gH~fC~~C~~~yl~ 92 (532)
++..-|.||.++- .+.-+.| |-.||..||++.=.
T Consensus 6 ee~pWC~ICneDA---tlrC~gCdgDLYC~rC~rE~H~ 40 (67)
T 2d8v_A 6 SGLPWCCICNEDA---TLRCAGCDGDLYCARCFREGHD 40 (67)
T ss_dssp CCCSSCTTTCSCC---CEEETTTTSEEECSSHHHHHTT
T ss_pred cCCCeeEEeCCCC---eEEecCCCCceehHHHHHHHcc
Confidence 3456799999982 2344589 78999999999753
No 135
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=57.22 E-value=2.6 Score=32.12 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=15.1
Q ss_pred ccccccCCccceeecCCchhhhc
Q 009562 508 KRVRKEDCLSGRFDLNLPAEVID 530 (532)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~ 530 (532)
-|++|.|.|...|.+|+||||++
T Consensus 13 p~~~kgg~g~etyYInIPaeI~k 35 (68)
T 3o27_A 13 PRAYKGGSGHTTFYLLIPKDIAE 35 (68)
T ss_dssp CEEC-----CCCEEEEECHHHHH
T ss_pred eeeeeCCCCceEEEEeCcHHHHH
Confidence 35666667788899999999986
No 136
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.86 E-value=2.7 Score=31.95 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=20.8
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCceeeccccccc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGAT 253 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC-~C~~~FCw~C~~~~ 253 (532)
-.||-|...+.. -++- .|||.||+.|...|
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~ 46 (72)
T 2djb_A 16 ILCSICKGYLID-----ATTITECLHTFCKSCIVRH 46 (72)
T ss_dssp GSCTTTSSCCSS-----CEECSSSCCEECHHHHHHH
T ss_pred CCCCCCChHHHC-----cCEECCCCCHHHHHHHHHH
Confidence 589999887763 2444 47777777777664
No 137
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=56.80 E-value=3.3 Score=29.47 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=26.1
Q ss_pred cCCCCCCcceeecCCCCeeEec-cCceeecccccccCC
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGATGR 255 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~-C~~~FCw~C~~~~~~ 255 (532)
..||-|...++.... .+.-. ||+.||..|...|-.
T Consensus 6 ~~C~IC~~~~~~~~~--~~~~~~C~H~f~~~Ci~~w~~ 41 (55)
T 1iym_A 6 VECAVCLAELEDGEE--ARFLPRCGHGFHAECVDMWLG 41 (55)
T ss_dssp CCCTTTCCCCCTTSC--CEECSSSCCEECTTHHHHTTT
T ss_pred CcCccCCccccCCCc--eEECCCCCCcccHHHHHHHHH
Confidence 579999888865432 34554 999999999998743
No 138
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=56.46 E-value=3.1 Score=34.60 Aligned_cols=38 Identities=21% Similarity=0.463 Sum_probs=24.2
Q ss_pred cCCCeeecCcccCCCCCCChhhhHHHHhhhhchHHHHHHHHcCccCCCCCCcceeecCC
Q 009562 175 ACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGG 233 (532)
Q Consensus 175 ~C~~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IEKn~G 233 (532)
+|++.||..|...| ...... .....||-|+..+.+..|
T Consensus 60 ~C~H~Fh~~Ci~~w------------l~~~~~---------~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 60 KCSHAFHLLCLLAM------------YCNGNK---------DGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp SSCCEECHHHHHHH------------HHHTCC---------SSCCBCTTTCCBSSSCSS
T ss_pred CCCCcccHHHHHHH------------HHcccC---------CCCCcCCCCCCccCCCCC
Confidence 69999999987643 211000 122589999998875433
No 139
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=56.14 E-value=11 Score=26.83 Aligned_cols=28 Identities=7% Similarity=0.058 Sum_probs=25.8
Q ss_pred ccCCHHHHHHHHHHcCCChHHHHHHHHh
Q 009562 4 LSLREHHARTLLIHYRWDVEKLLAVLVE 31 (532)
Q Consensus 4 l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 31 (532)
+|.+.+.|+.-|+..+||+++.++.++.
T Consensus 18 MGF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 18 MGYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp TTCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4889999999999999999999999885
No 140
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=55.50 E-value=3 Score=30.48 Aligned_cols=35 Identities=31% Similarity=0.663 Sum_probs=23.7
Q ss_pred cCCCCCCcceeec--CCCCeeEeccCceeeccccccc
Q 009562 219 KPCPKCHKPVEKN--GGCNLVSCICGQAFCWLCGGAT 253 (532)
Q Consensus 219 K~CPkC~~~IEKn--~GCnhMtC~C~~~FCw~C~~~~ 253 (532)
..||-|...+... .+-.-+.-.|||.||..|...|
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~ 40 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDS 40 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHH
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHH
Confidence 4688888877643 2222233369999999998885
No 141
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=55.39 E-value=14 Score=25.29 Aligned_cols=28 Identities=25% Similarity=0.514 Sum_probs=25.3
Q ss_pred ccCCHHHHHHHHHHcCCChHHHHHHHHh
Q 009562 4 LSLREHHARTLLIHYRWDVEKLLAVLVE 31 (532)
Q Consensus 4 l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 31 (532)
+|.+.+.|+.-|+..+||++...+.++.
T Consensus 14 MGF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 14 MGFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp TTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 5899999999999999999999988874
No 142
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=54.38 E-value=6.4 Score=32.78 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=23.5
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeecccccccC
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 254 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~~ 254 (532)
-.||-|...+.. -++=.|||.||..|...|-
T Consensus 16 ~~C~iC~~~~~~-----p~~~~CgH~fC~~Ci~~~~ 46 (115)
T 3l11_A 16 CQCGICMEILVE-----PVTLPCNHTLCKPCFQSTV 46 (115)
T ss_dssp HBCTTTCSBCSS-----CEECTTSCEECHHHHCCCC
T ss_pred CCCccCCcccCc-----eeEcCCCCHHhHHHHHHHH
Confidence 479999977752 2333799999999998863
No 143
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=54.34 E-value=3.8 Score=30.68 Aligned_cols=33 Identities=18% Similarity=0.390 Sum_probs=23.4
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeeccccccc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 253 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~ 253 (532)
..||-|...+.... ..+.-.|||.||+.|...|
T Consensus 15 ~~C~IC~~~~~~~~--~~~~~~C~H~fc~~Ci~~~ 47 (69)
T 2kiz_A 15 EKCTICLSILEEGE--DVRRLPCMHLFHQVCVDQW 47 (69)
T ss_dssp CSBTTTTBCCCSSS--CEEECTTSCEEEHHHHHHH
T ss_pred CCCeeCCccccCCC--cEEEeCCCCHHHHHHHHHH
Confidence 68999988775322 2233368999999998886
No 144
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=54.31 E-value=3.3 Score=32.14 Aligned_cols=30 Identities=30% Similarity=0.702 Sum_probs=23.1
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeeccccccc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 253 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~ 253 (532)
-.||-|...+.. -+.-.|||.||..|...|
T Consensus 20 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~ 49 (85)
T 2ecw_A 20 VTCPICLELLKE-----PVSADCNHSFCRACITLN 49 (85)
T ss_dssp TSCTTTCSCCSS-----CEECTTSCCBCHHHHHHH
T ss_pred CCCcCCChhhCc-----ceeCCCCCHHHHHHHHHH
Confidence 579999887753 245579999999998875
No 145
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=54.23 E-value=3.4 Score=33.52 Aligned_cols=31 Identities=19% Similarity=0.408 Sum_probs=24.6
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCceeecccccccC
Q 009562 219 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGATG 254 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC-~C~~~FCw~C~~~~~ 254 (532)
-.||-|...+.. -++. .|||.||..|...|-
T Consensus 23 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~ 54 (99)
T 2y43_A 23 LRCGICFEYFNI-----AMIIPQCSHNYCSLCIRKFL 54 (99)
T ss_dssp TBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHH
T ss_pred CCcccCChhhCC-----cCEECCCCCHhhHHHHHHHH
Confidence 589999988763 4666 699999999998863
No 146
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=54.19 E-value=6.2 Score=30.24 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=21.9
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeecccccccC
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 254 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~~ 254 (532)
..||-|...+.... ..+.-.|+|.||+.|+..|-
T Consensus 16 ~~C~IC~~~~~~~~--~~~~~~C~H~fc~~Ci~~~~ 49 (78)
T 2ect_A 16 LECPVCKEDYALGE--SVRQLPCNHLFHDSCIVPWL 49 (78)
T ss_dssp CCCTTTTSCCCTTS--CEEECTTSCEEETTTTHHHH
T ss_pred CCCeeCCccccCCC--CEEEeCCCCeecHHHHHHHH
Confidence 68999987775332 11222577888888887753
No 147
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.90 E-value=3.7 Score=30.88 Aligned_cols=30 Identities=20% Similarity=0.469 Sum_probs=23.6
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeecccccccC
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 254 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~~ 254 (532)
..||-|...+.. +.=.|||.||+.|...|-
T Consensus 16 ~~C~IC~~~~~~------~~~~CgH~fc~~Ci~~~~ 45 (70)
T 2ecn_A 16 EECCICMDGRAD------LILPCAHSFCQKCIDKWS 45 (70)
T ss_dssp CCCSSSCCSCCS------EEETTTEEECHHHHHHSS
T ss_pred CCCeeCCcCccC------cccCCCCcccHHHHHHHH
Confidence 589999887653 444799999999998864
No 148
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=53.87 E-value=14 Score=28.56 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=25.3
Q ss_pred cCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 009562 5 SLREHHARTLLIHYRWDVEKLLAVLVEN 32 (532)
Q Consensus 5 ~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 32 (532)
.+..+....+|.+|+-|+|.+++.+++.
T Consensus 26 dLG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 26 DLGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp SSCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 4678899999999999999999999974
No 149
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.79 E-value=3.9 Score=31.80 Aligned_cols=30 Identities=23% Similarity=0.493 Sum_probs=22.4
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeeccccccc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 253 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~ 253 (532)
-.||-|...+.. -++-.|||.||+.|...|
T Consensus 16 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~ 45 (81)
T 2csy_A 16 FRCFICRQAFQN-----PVVTKCRHYFCESCALEH 45 (81)
T ss_dssp SBCSSSCSBCCS-----EEECTTSCEEEHHHHHHH
T ss_pred CCCcCCCchhcC-----eeEccCCCHhHHHHHHHH
Confidence 579999888753 344468888888888775
No 150
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=52.20 E-value=3.7 Score=36.05 Aligned_cols=30 Identities=20% Similarity=0.687 Sum_probs=24.5
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeeccccccc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 253 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~ 253 (532)
-.||-|...+.. -++..||+.||..|...|
T Consensus 32 ~~C~IC~~~~~~-----pv~~~CgH~FC~~Ci~~~ 61 (141)
T 3knv_A 32 YLCSACRNVLRR-----PFQAQCGHRYCSFCLASI 61 (141)
T ss_dssp GBCTTTCSBCSS-----EEECTTSCEEEHHHHHHH
T ss_pred cCCCCCChhhcC-----cEECCCCCccCHHHHHHH
Confidence 479999987752 366689999999999886
No 151
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=52.14 E-value=4.2 Score=31.88 Aligned_cols=26 Identities=38% Similarity=0.982 Sum_probs=21.4
Q ss_pred cCCCe-eecCcccCCCCCCChhhhHHHHhhhhchHHHHHHHHcCccCCCCCCcceee
Q 009562 175 ACGAQ-FCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEK 230 (532)
Q Consensus 175 ~C~~~-fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IEK 230 (532)
+||+. ||..|...+ +.||-|+.+|.+
T Consensus 35 pCgH~~~C~~C~~~~------------------------------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 35 PCGHTVCCESCAAQL------------------------------QSCPVCRSRVEH 61 (79)
T ss_dssp TTCBCCBCHHHHTTC------------------------------SBCTTTCCBCCE
T ss_pred CCCCHHHHHHHHHhc------------------------------CcCCCCCchhhC
Confidence 79999 999987632 389999999984
No 152
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=52.06 E-value=1.4e+02 Score=31.63 Aligned_cols=6 Identities=17% Similarity=0.445 Sum_probs=3.5
Q ss_pred CccccC
Q 009562 264 GHSCGR 269 (532)
Q Consensus 264 g~~C~~ 269 (532)
|..|+.
T Consensus 42 GvkCPS 47 (562)
T 3ghg_A 42 NYKCPS 47 (562)
T ss_dssp TTEEEC
T ss_pred CCCCCc
Confidence 356764
No 153
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.99 E-value=3.6 Score=30.58 Aligned_cols=35 Identities=31% Similarity=0.628 Sum_probs=24.4
Q ss_pred cCCCCCCcceeecC--CCCeeEeccCceeeccccccc
Q 009562 219 KPCPKCHKPVEKNG--GCNLVSCICGQAFCWLCGGAT 253 (532)
Q Consensus 219 K~CPkC~~~IEKn~--GCnhMtC~C~~~FCw~C~~~~ 253 (532)
..||-|...+.... +-.-+.-.|||.||..|...|
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~ 52 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDS 52 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHH
T ss_pred CCCcccCccccccccccCCeEeCCCCChhcHHHHHHH
Confidence 57999998876432 221233369999999999886
No 154
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.95 E-value=3.2 Score=31.57 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=23.2
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeeccccccc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 253 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~ 253 (532)
..||-|...+..... .+...|+|.||+.|...|
T Consensus 16 ~~C~IC~~~~~~~~~--~~~~~C~H~f~~~Ci~~~ 48 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDE--LGICPCKHAFHRKCLIKW 48 (74)
T ss_dssp CBCSSSCCBCCSSSC--EEEETTTEEEEHHHHHHH
T ss_pred CCCcCCCcccCCCCc--EEEcCCCCEecHHHHHHH
Confidence 579999988764332 233368888888888875
No 155
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=50.86 E-value=1.4e+02 Score=31.11 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCC--chHHHHHHHHHHHHHHHHHHHH
Q 009562 374 KQHLFEDQQQQLEANVEKLSKFLEEPFDQYP--DDKVMEIRMQVINLSVITDTLC 426 (532)
Q Consensus 374 ~~~lfe~~q~~lE~~~E~L~~~le~~~~~~~--~~~i~~~k~~~~~l~~~~~~~~ 426 (532)
..+.|...-.+||++++.|.+.|...+..+. ...|.+++.++..|-..++...
T Consensus 105 ndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~ 159 (491)
T 1m1j_A 105 LDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKI 159 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666666654442211 1224444555555555554443
No 156
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=50.41 E-value=5.3 Score=34.91 Aligned_cols=30 Identities=23% Similarity=0.552 Sum_probs=20.2
Q ss_pred cccccCCCCCCCCceEEeccc---cceeeeec-CCCe
Q 009562 147 KMVKWCPSTPHCGNAIRVEEV---EVCEVECA-CGAQ 179 (532)
Q Consensus 147 ~~~~~CP~~p~C~~~i~~~~~---~~~~v~C~-C~~~ 179 (532)
..+++|| .|++.+.+..+ ....+.|. |++.
T Consensus 22 ~~~~FCP---eCgNmL~pked~~~~~l~~~CrtCgY~ 55 (133)
T 3qt1_I 22 TTFRFCR---DCNNMLYPREDKENNRLLFECRTCSYV 55 (133)
T ss_dssp CCCCBCT---TTCCBCBCCBCTTTCCBCCBCSSSCCB
T ss_pred cCCeeCC---CCCCEeeECccCCCceeEEECCCCCCc
Confidence 4678999 79999987653 23345663 6654
No 157
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=49.69 E-value=4.2 Score=34.24 Aligned_cols=30 Identities=30% Similarity=0.686 Sum_probs=23.9
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeeccccccc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 253 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~ 253 (532)
-.||-|...+.. -++..||+.||+.|...|
T Consensus 19 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~ 48 (118)
T 3hct_A 19 YECPICLMALRE-----AVQTPCGHRFCKACIIKS 48 (118)
T ss_dssp GBCTTTCSBCSS-----EEECTTSCEEEHHHHHHH
T ss_pred CCCCcCChhhcC-----eEECCcCChhhHHHHHHH
Confidence 489999988762 255579999999999885
No 158
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=48.75 E-value=4.8 Score=33.66 Aligned_cols=30 Identities=23% Similarity=0.560 Sum_probs=23.6
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeeccccccc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 253 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~ 253 (532)
-.||-|...+.. -++-.|||.||+.|...|
T Consensus 24 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~ 53 (116)
T 1rmd_A 24 ISCQICEHILAD-----PVETSCKHLFCRICILRC 53 (116)
T ss_dssp TBCTTTCSBCSS-----EEECTTSCEEEHHHHHHH
T ss_pred CCCCCCCcHhcC-----cEEcCCCCcccHHHHHHH
Confidence 579999988762 355579999999998875
No 159
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.29 E-value=4.2 Score=31.45 Aligned_cols=30 Identities=33% Similarity=0.749 Sum_probs=22.2
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeeccccccc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 253 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~ 253 (532)
-.||-|...+.. -++-.|||.||..|...|
T Consensus 20 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~ 49 (85)
T 2ecv_A 20 VTCPICLELLTQ-----PLSLDCGHSFCQACLTAN 49 (85)
T ss_dssp CCCTTTCSCCSS-----CBCCSSSCCBCTTHHHHH
T ss_pred CCCCCCCcccCC-----ceeCCCCCHHHHHHHHHH
Confidence 589999988753 233368888888888775
No 160
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=48.17 E-value=12 Score=28.68 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=19.3
Q ss_pred cCCCCCCcceeecCCCCeeEec-cCcee
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCI-CGQAF 245 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~-C~~~F 245 (532)
-.||.|+.+++-+.+=..+.|. ||..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 5899999999876554557773 65554
No 161
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=47.51 E-value=13 Score=28.68 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=21.8
Q ss_pred ccCCCCCCcceeecCCCCeeEec-cCceeecc
Q 009562 218 TKPCPKCHKPVEKNGGCNLVSCI-CGQAFCWL 248 (532)
Q Consensus 218 tK~CPkC~~~IEKn~GCnhMtC~-C~~~FCw~ 248 (532)
.-.||.|+.+++-+.+=..+.|. ||..|=-.
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (70)
T 2js4_A 8 ILVCPVCKGRLEFQRAQAELVCNADRLAFPVR 39 (70)
T ss_dssp CCBCTTTCCBEEEETTTTEEEETTTTEEEEEE
T ss_pred heECCCCCCcCEEeCCCCEEEcCCCCceecCC
Confidence 35899999999876654567784 76655333
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=47.07 E-value=9.5 Score=36.55 Aligned_cols=15 Identities=7% Similarity=0.038 Sum_probs=11.7
Q ss_pred eeecCCCeeecCccc
Q 009562 172 VECACGAQFCFSCLS 186 (532)
Q Consensus 172 v~C~C~~~fC~~C~~ 186 (532)
|+-+||++||..|-.
T Consensus 222 v~~~~gh~f~~~~i~ 236 (281)
T 2c2l_A 222 CITPSGITYDRKDIE 236 (281)
T ss_dssp EECSSCCEEETTHHH
T ss_pred eECCCCCEECHHHHH
Confidence 444699999998854
No 163
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=46.74 E-value=19 Score=27.95 Aligned_cols=28 Identities=11% Similarity=0.173 Sum_probs=26.1
Q ss_pred ccCCHHHHHHHHHHcCCChHHHHHHHHh
Q 009562 4 LSLREHHARTLLIHYRWDVEKLLAVLVE 31 (532)
Q Consensus 4 l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 31 (532)
+|.+.+.|+.-|+.++||++..++.++.
T Consensus 39 MGF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 39 MGFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp TTCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5889999999999999999999999985
No 164
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=46.31 E-value=14 Score=28.36 Aligned_cols=27 Identities=22% Similarity=0.520 Sum_probs=19.3
Q ss_pred cCCCCCCcceeecCCCCeeEec-cCcee
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCI-CGQAF 245 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~-C~~~F 245 (532)
-.||.|+.+++-..+=..+.|. ||..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 9 LACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp CCCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred eeCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 5899999999865554557774 66554
No 165
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.16 E-value=3.2 Score=31.83 Aligned_cols=28 Identities=36% Similarity=0.770 Sum_probs=21.6
Q ss_pred ccCCCCCCcceeecC--CCCeeEeccCceeecc
Q 009562 218 TKPCPKCHKPVEKNG--GCNLVSCICGQAFCWL 248 (532)
Q Consensus 218 tK~CPkC~~~IEKn~--GCnhMtC~C~~~FCw~ 248 (532)
..+|-.|++.+...+ | +.|+||..||-.
T Consensus 15 ~~rC~~C~kk~gL~~~eg---f~CrCg~~FC~~ 44 (67)
T 1x4w_A 15 RRRCFQCQTKLELVQQEL---GSCRCGYVFCML 44 (67)
T ss_dssp TTBCSSSCCBCCHHHHHH---HCCSSSCCCCTT
T ss_pred CCcchhhCCeecccccCc---eEecCCCEehhc
Confidence 468999999887432 3 578999999974
No 166
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=45.34 E-value=1.6e+02 Score=26.59 Aligned_cols=70 Identities=16% Similarity=0.172 Sum_probs=41.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009562 365 EMTDEEREIKQHLFEDQQQQLEA-------NVEKLSKFLEEPFDQYPDDKVMEIRMQVINLSVITDTLCKKMYECIEND 436 (532)
Q Consensus 365 ~~~~~~~~~~~~lfe~~q~~lE~-------~~E~L~~~le~~~~~~~~~~i~~~k~~~~~l~~~~~~~~~~l~~~~e~~ 436 (532)
++|+++++..+.|++..+.+... .-.+|..++.. +.+++++|.++-.++.+|........-++-..+.++
T Consensus 67 nLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a--~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em~Ke 143 (175)
T 3lay_A 67 PLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTA--SSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQA 143 (175)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47888888888887766655442 23333333332 234556788888888877766655444444444333
No 167
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=45.23 E-value=4.4 Score=33.42 Aligned_cols=30 Identities=30% Similarity=0.667 Sum_probs=22.5
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeeccccccc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 253 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~ 253 (532)
-.||-|...+.. -++-.|||.||+.|...|
T Consensus 22 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~ 51 (112)
T 1jm7_A 22 LECPICLELIKE-----PVSTKCDHIFCKFCMLKL 51 (112)
T ss_dssp TSCSSSCCCCSS-----CCBCTTSCCCCSHHHHHH
T ss_pred CCCcccChhhcC-----eEECCCCCHHHHHHHHHH
Confidence 589999987752 233368999999998875
No 168
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=44.73 E-value=6.5 Score=34.81 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=21.8
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeeccccccc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGAT 253 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~ 253 (532)
-.||-|...+. +-++-.||+.||+.|...|
T Consensus 79 ~~C~IC~~~~~-----~pv~~~CgH~fC~~Ci~~~ 108 (150)
T 1z6u_A 79 FMCVCCQELVY-----QPVTTECFHNVCKDCLQRS 108 (150)
T ss_dssp TBCTTTSSBCS-----SEEECTTSCEEEHHHHHHH
T ss_pred CEeecCChhhc-----CCEEcCCCCchhHHHHHHH
Confidence 47999988775 2344468888888888774
No 169
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=44.57 E-value=15 Score=37.88 Aligned_cols=33 Identities=30% Similarity=0.826 Sum_probs=23.7
Q ss_pred eecCCCeeecCcccCCCCCCChhhhHHHHhhhhchHHHHHHHHcCccCCCCCCcceee
Q 009562 173 ECACGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEK 230 (532)
Q Consensus 173 ~C~C~~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IEK 230 (532)
.-+||+.||..|... |.. .....||.|+.+|..
T Consensus 347 ~lpCGH~FC~~Ci~~------------wl~-------------~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 347 IEPCGHLMCTSCLTS------------WQE-------------SEGQGCPFCRCEIKG 379 (389)
T ss_dssp EETTCCEECHHHHHH------------HHH-------------HTCSBCTTTCCBCCE
T ss_pred EeCCCChhhHHHHHH------------HHh-------------cCCCCCCCCCCccCC
Confidence 347999999988643 221 133789999999874
No 170
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=44.47 E-value=98 Score=32.86 Aligned_cols=65 Identities=18% Similarity=0.225 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCC--chHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHhhh
Q 009562 376 HLFEDQQQQLEANVEKLSKFLEEPFDQYP--DDKVMEIRMQVINLSVITDTLCK----------------KMYECIENDL 437 (532)
Q Consensus 376 ~lfe~~q~~lE~~~E~L~~~le~~~~~~~--~~~i~~~k~~~~~l~~~~~~~~~----------------~l~~~~e~~l 437 (532)
+.+...-.+|+++++.|.+.|...+..+. ...|.+++.++..|-..|+...+ +-|+.+|.-|
T Consensus 106 NtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQL 185 (562)
T 3ghg_A 106 NTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQL 185 (562)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHH
Confidence 44444445556666655555554432211 12245555555555555554443 3366676665
Q ss_pred hhh
Q 009562 438 LGC 440 (532)
Q Consensus 438 ~~~ 440 (532)
..+
T Consensus 186 eQv 188 (562)
T 3ghg_A 186 EQV 188 (562)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 171
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=44.32 E-value=2.1e+02 Score=27.00 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 009562 376 HLFEDQQQQLEANVEKLSKFLEEPFDQYP---DDKVMEIRMQVINLSVITDTLCKKMYECIENDLLGCL 441 (532)
Q Consensus 376 ~lfe~~q~~lE~~~E~L~~~le~~~~~~~---~~~i~~~k~~~~~l~~~~~~~~~~l~~~~e~~l~~~~ 441 (532)
-+.+..+..++.++++|.+.++-...++- ...+..+|.++.-....+...+..+++.+...|.+..
T Consensus 165 P~~ee~r~kl~~~~~el~~~l~p~~~e~~~kl~~~~e~lr~~l~p~~e~lk~~l~p~~e~~~~~l~~~~ 233 (243)
T 2a01_A 165 PYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSAL 233 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCHHHHHHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 35677777778888888887764333332 2335566666665555555555566666666555433
No 172
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=43.34 E-value=25 Score=26.42 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=26.4
Q ss_pred ccCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 009562 4 LSLREHHARTLLIHYRWDVEKLLAVLVEN 32 (532)
Q Consensus 4 l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 32 (532)
+|.+.+.|+.-|+..+||++..++.++..
T Consensus 19 MGF~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 19 MGFSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp TTCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 58899999999999999999999999864
No 173
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=42.57 E-value=30 Score=24.89 Aligned_cols=28 Identities=14% Similarity=0.180 Sum_probs=25.2
Q ss_pred ccC-CHHHHHHHHHHcCCChHHHHHHHHh
Q 009562 4 LSL-REHHARTLLIHYRWDVEKLLAVLVE 31 (532)
Q Consensus 4 l~i-~~~~a~~LL~~~~W~~~~l~~~~~~ 31 (532)
+|. +.+.|+.-|+..+||++..++.++.
T Consensus 21 MGF~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 21 MGFINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp TTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 477 8889999999999999999999985
No 174
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=42.04 E-value=20 Score=28.48 Aligned_cols=59 Identities=24% Similarity=0.388 Sum_probs=33.3
Q ss_pred CeeecCcccCCCCCCChhhhHHHHhhhhchHHHHHHHHcCccCCCCCCcceeecCCCCeeEec--cCceeecccccccCC
Q 009562 178 AQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCI--CGQAFCWLCGGATGR 255 (532)
Q Consensus 178 ~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IEKn~GCnhMtC~--C~~~FCw~C~~~~~~ 255 (532)
..+|+.|...-|..-.|... .+|.+|+..-... -.|. =...+||.|++.
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~---------------------~rcY~c~~~gh~~-----~~c~~p~~~~~CYnCG~~--- 55 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSI---------------------WRAYILVDDNEKA-----KPKVLPFHTIYCYNCGGK--- 55 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGG---------------------TCCCCBC------------------CCCBCSSSSCB---
T ss_pred cCCCCCCCCCCCccccCCCc---------------------ccccccccCCccc-----ccccCCCCCCeecccCCC---
Confidence 35799999999998788641 2466666432110 1131 245799999987
Q ss_pred CCCccccCCccccCc
Q 009562 256 DHTWSRIAGHSCGRY 270 (532)
Q Consensus 256 ~H~w~~h~g~~C~~~ 270 (532)
.|-+..|+..
T Consensus 56 -----GH~~rdC~~~ 65 (83)
T 3nyb_B 56 -----GHFGDDCKEK 65 (83)
T ss_dssp -----SSCGGGCSSC
T ss_pred -----CcCcccCCcc
Confidence 3445667643
No 175
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=40.98 E-value=4.7 Score=32.32 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=24.1
Q ss_pred cCCCCCCcceeecCCCCeeEeccCceeecccccccC
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATG 254 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~~~ 254 (532)
..||-|...++... ..+.-.|||.||+.|...|-
T Consensus 41 ~~C~IC~~~~~~~~--~~~~l~C~H~Fh~~Ci~~wl 74 (91)
T 2l0b_A 41 MCCPICCSEYVKGD--VATELPCHHYFHKPCVSIWL 74 (91)
T ss_dssp SEETTTTEECCTTC--EEEEETTTEEEEHHHHHHHH
T ss_pred CCCcccChhhcCCC--cEEecCCCChHHHHHHHHHH
Confidence 47999987765433 12333699999999999874
No 176
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=39.44 E-value=27 Score=27.83 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=26.2
Q ss_pred ccCCHHHHHHHHHHcCCChHHHHHHHHh
Q 009562 4 LSLREHHARTLLIHYRWDVEKLLAVLVE 31 (532)
Q Consensus 4 l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 31 (532)
+|++.+.|+.-|+..+||+++.++.++.
T Consensus 39 MGF~~~~A~~AL~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 39 MGFDTVVAEAALRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp HSCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5889999999999999999999999995
No 177
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=39.44 E-value=21 Score=28.66 Aligned_cols=37 Identities=24% Similarity=0.446 Sum_probs=25.9
Q ss_pred cccccccccccccccccC-ce-ecCCCCcccHHHHHHHH
Q 009562 55 LSSTVMCDICMEEVAGDK-AT-KMDCGHCFCNDCWTEHF 91 (532)
Q Consensus 55 ~~~~~~C~IC~e~~~~~~-~~-~l~CgH~fC~~C~~~yl 91 (532)
..+...|.+|...|.... -. --.||+.||..|....+
T Consensus 17 d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 17 DSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cccCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 345568999998876321 12 23899999999977643
No 178
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=38.96 E-value=21 Score=27.30 Aligned_cols=31 Identities=19% Similarity=0.173 Sum_probs=21.6
Q ss_pred ccCCCCCCcceeecCCCCeeEec-cCceeecc
Q 009562 218 TKPCPKCHKPVEKNGGCNLVSCI-CGQAFCWL 248 (532)
Q Consensus 218 tK~CPkC~~~IEKn~GCnhMtC~-C~~~FCw~ 248 (532)
.-.||.|+.+++-+..=+.+.|. |+..|=-.
T Consensus 10 iL~CP~ck~~L~~~~~~g~LvC~~c~~~YPI~ 41 (67)
T 2jny_A 10 VLACPKDKGPLRYLESEQLLVNERLNLAYRID 41 (67)
T ss_dssp CCBCTTTCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred HhCCCCCCCcCeEeCCCCEEEcCCCCccccCC
Confidence 35899999999876544567784 76655433
No 179
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=38.67 E-value=14 Score=37.48 Aligned_cols=26 Identities=27% Similarity=0.841 Sum_probs=22.0
Q ss_pred cCCCe-eecCcccCCCCCCChhhhHHHHhhhhchHHHHHHHHcCccCCCCCCcceee
Q 009562 175 ACGAQ-FCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEK 230 (532)
Q Consensus 175 ~C~~~-fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IEK 230 (532)
+||+. ||..|...+ +.||-|+.+|.+
T Consensus 312 pCgH~~fC~~C~~~~------------------------------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 312 PCGHLVVCQECAPSL------------------------------RKCPICRGIIKG 338 (345)
T ss_dssp TTCCEEECTTTGGGC------------------------------SBCTTTCCBCCE
T ss_pred CCCChhHhHHHHhcC------------------------------CcCCCCCCCccC
Confidence 89999 999997642 589999999974
No 180
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.36 E-value=12 Score=29.21 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=17.1
Q ss_pred CCCCeeEeccCceeecccccccCC
Q 009562 232 GGCNLVSCICGQAFCWLCGGATGR 255 (532)
Q Consensus 232 ~GCnhMtC~C~~~FCw~C~~~~~~ 255 (532)
+.+.-+.-.|+|.|+..|...|-.
T Consensus 39 ~~~~~~~~~C~H~FH~~Ci~~Wl~ 62 (81)
T 2ecl_A 39 EDCVVVWGECNHSFHNCCMSLWVK 62 (81)
T ss_dssp TTCCEEEETTSCEEEHHHHHHHTT
T ss_pred CceEEEeCCCCCccChHHHHHHHH
Confidence 344445556999999999998743
No 181
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=38.09 E-value=23 Score=29.83 Aligned_cols=28 Identities=14% Similarity=0.356 Sum_probs=22.0
Q ss_pred ccCCCCCCcceee-c---CCCCeeEec-cCcee
Q 009562 218 TKPCPKCHKPVEK-N---GGCNLVSCI-CGQAF 245 (532)
Q Consensus 218 tK~CPkC~~~IEK-n---~GCnhMtC~-C~~~F 245 (532)
.+-||.|+.++.- . .|.+.+.|+ |++.+
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 4789999988753 2 368899995 99977
No 182
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=37.89 E-value=33 Score=26.46 Aligned_cols=29 Identities=28% Similarity=0.252 Sum_probs=26.4
Q ss_pred ccCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 009562 4 LSLREHHARTLLIHYRWDVEKLLAVLVEN 32 (532)
Q Consensus 4 l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 32 (532)
+|.+...|+.-|+..+||++..++.++..
T Consensus 39 MGF~~~~a~~AL~~t~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 39 FGFAEDVARKALKASGGDIEKATDWVFNN 67 (73)
T ss_dssp HTCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 58899999999999999999999999863
No 183
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=37.87 E-value=43 Score=27.01 Aligned_cols=49 Identities=22% Similarity=0.607 Sum_probs=34.5
Q ss_pred cccccccccccccc---cCceec--CCCCcccHHHHHHHHHhhhccCCccccccccccccccc
Q 009562 57 STVMCDICMEEVAG---DKATKM--DCGHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAIC 114 (532)
Q Consensus 57 ~~~~C~IC~e~~~~---~~~~~l--~CgH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~ 114 (532)
....|.||-|++.. .++|.. .|+-..|+.|+.-- .++|. -.||+ |+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYE----rkeG~---q~Cpq--CktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYE----RREGT---QNCPQ--CKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHH----HHTSC---SSCTT--TCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHH----HhccC---ccccc--cCCcc
Confidence 34689999999643 234443 79999999997643 34555 68998 88755
No 184
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.97 E-value=31 Score=25.67 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=26.0
Q ss_pred ccCCHHHHHHHHHHcCCChHHHHHHHHh
Q 009562 4 LSLREHHARTLLIHYRWDVEKLLAVLVE 31 (532)
Q Consensus 4 l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 31 (532)
+|.+...|+.-|+..+||++..++.++.
T Consensus 19 MGF~~~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 19 MGFSRDQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp HTCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5889999999999999999999999986
No 185
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=36.61 E-value=2.5e+02 Score=28.48 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=6.3
Q ss_pred HHHHHHhhhhhhh
Q 009562 429 MYECIENDLLGCL 441 (532)
Q Consensus 429 l~~~~e~~l~~~~ 441 (532)
|...+..+|+..+
T Consensus 188 L~qv~a~~llP~~ 200 (390)
T 1deq_A 188 LEQVIAINLLPSR 200 (390)
T ss_pred HHhhhhhcccccc
Confidence 4444445555443
No 186
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=35.37 E-value=11 Score=30.74 Aligned_cols=47 Identities=26% Similarity=0.555 Sum_probs=34.0
Q ss_pred cccccccccccccccCceecCC-CCcccHHHHHHHHHhhhccCCcccccccccccccccChH
Q 009562 57 STVMCDICMEEVAGDKATKMDC-GHCFCNDCWTEHFIVKINEGQSKRIRCMAHKCNAICDEA 117 (532)
Q Consensus 57 ~~~~C~IC~e~~~~~~~~~l~C-gH~fC~~C~~~yl~~~i~~g~~~~i~CP~~~C~~~~~~~ 117 (532)
..+.|-.|+-... --+.| .|+.|..|+...+.. .=+||. |+..++..
T Consensus 27 G~~nCKsCWf~~k----~LV~C~dHYLCl~CLtlmL~~--------SdrCpI--C~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENK----GLVECNNHYLCLNCLTLLLSV--------SNRCPI--CKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCCS----SEEECSSCEEEHHHHHHTCSS--------SSEETT--TTEECCCC
T ss_pred CcccChhhccccC----CeeeecchhhHHHHHHHHHhh--------ccCCcc--cCCcCCcc
Confidence 4678999987633 22355 599999999988764 237998 88877643
No 187
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=33.30 E-value=33 Score=28.97 Aligned_cols=21 Identities=24% Similarity=0.562 Sum_probs=15.4
Q ss_pred CCCeeecCcccC-CCCCCChhh
Q 009562 176 CGAQFCFSCLSE-AHSPCSCSM 196 (532)
Q Consensus 176 C~~~fC~~C~~~-~H~p~~C~~ 196 (532)
|....|+.|... -|....|..
T Consensus 20 Cp~~~C~~Cg~~~gH~~~~C~~ 41 (124)
T 2lli_A 20 CPHIICSYCGATDDHYSRHCPK 41 (124)
T ss_dssp TTSCCCTTTCCTTTCCTTTGGG
T ss_pred CcCCcCcCCCCcCCccCcccCC
Confidence 566788888876 787777753
No 188
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=32.85 E-value=18 Score=31.43 Aligned_cols=29 Identities=17% Similarity=0.423 Sum_probs=22.2
Q ss_pred CccCCCCCCccee-ec---CCCCeeEec-cCcee
Q 009562 217 HTKPCPKCHKPVE-KN---GGCNLVSCI-CGQAF 245 (532)
Q Consensus 217 ~tK~CPkC~~~IE-Kn---~GCnhMtC~-C~~~F 245 (532)
..+-||.|+.++- +. .|.+.+.|+ |++.+
T Consensus 23 ~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 23 TFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred CCeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 4589999998763 22 368899995 99965
No 189
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=32.51 E-value=12 Score=28.95 Aligned_cols=24 Identities=25% Similarity=0.704 Sum_probs=14.4
Q ss_pred cCCCCCCcceeecCCCCeeEec-cCc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCI-CGQ 243 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~-C~~ 243 (532)
-.|+.|+..++...+ +-+.|+ ||+
T Consensus 29 Y~C~~CG~~~e~~~~-d~irCp~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLSRT-DAVRCKDCGH 53 (70)
T ss_dssp EECSSSCCEECCCTT-STTCCSSSCC
T ss_pred EECCCCCCcceeCCC-CCccCCCCCc
Confidence 368888887665433 335664 665
No 190
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=32.21 E-value=20 Score=34.98 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=28.9
Q ss_pred CccccCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 009562 1 MELLSLREHHARTLLIHYRWDVEKLLAVLVEN 32 (532)
Q Consensus 1 ~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 32 (532)
|.+.|.++.+|+..|..++||.+..++.|++.
T Consensus 23 ~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~~ 54 (270)
T 3bq3_A 23 TSLTKCDPKVSRKYLQRNHWNINYALNDYYDK 54 (270)
T ss_dssp HHHHCCCHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 35778999999999999999999999999963
No 191
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=31.48 E-value=36 Score=24.93 Aligned_cols=25 Identities=40% Similarity=1.071 Sum_probs=17.9
Q ss_pred cCCCCCCcceeecCCCCeeEec---cCcee
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCI---CGQAF 245 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~---C~~~F 245 (532)
-.||.|+.+++-.. ..+.|. |+..|
T Consensus 11 L~CP~c~~~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 11 LACPACHAPLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp CCCSSSCSCEEEET--TEEEECSSSCCCEE
T ss_pred eeCCCCCCcceecC--CEEEcCCcCCCcEE
Confidence 58999999988766 456664 55443
No 192
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=31.35 E-value=10 Score=32.31 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=0.0
Q ss_pred cCCCCeeEeccCceeecccccccCC
Q 009562 231 NGGCNLVSCICGQAFCWLCGGATGR 255 (532)
Q Consensus 231 n~GCnhMtC~C~~~FCw~C~~~~~~ 255 (532)
.+.|.-+.-.|+|.|+..|...|-.
T Consensus 74 ~~~~~v~~~~C~H~FH~~CI~~Wl~ 98 (117)
T 4a0k_B 74 SEECTVAWGVCNHAFHFHCISRWLK 98 (117)
T ss_dssp -------------------------
T ss_pred ccccccccCCcCceEcHHHHHHHHH
Confidence 3456556668999999999999754
No 193
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=31.30 E-value=21 Score=30.56 Aligned_cols=36 Identities=19% Similarity=0.509 Sum_probs=25.2
Q ss_pred cccccccccccccccccC-cee-cCCCCcccHHHHHHH
Q 009562 55 LSSTVMCDICMEEVAGDK-ATK-MDCGHCFCNDCWTEH 90 (532)
Q Consensus 55 ~~~~~~C~IC~e~~~~~~-~~~-l~CgH~fC~~C~~~y 90 (532)
......|.+|...|.... -.- -.||+.||..|....
T Consensus 66 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 66 DNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 344568999999876321 122 389999999997654
No 194
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=31.02 E-value=26 Score=29.90 Aligned_cols=28 Identities=18% Similarity=0.402 Sum_probs=21.8
Q ss_pred ccCCCCCCcceee----cCCCCeeEec-cCcee
Q 009562 218 TKPCPKCHKPVEK----NGGCNLVSCI-CGQAF 245 (532)
Q Consensus 218 tK~CPkC~~~IEK----n~GCnhMtC~-C~~~F 245 (532)
.+-||.|+.++.- ..+-+.+.|+ |++.+
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCee
Confidence 4789999987762 2678899995 99876
No 195
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=31.00 E-value=26 Score=32.37 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=18.2
Q ss_pred CccCCCCCCcce-eecCCCCeeEe-ccCceee
Q 009562 217 HTKPCPKCHKPV-EKNGGCNLVSC-ICGQAFC 246 (532)
Q Consensus 217 ~tK~CPkC~~~I-EKn~GCnhMtC-~C~~~FC 246 (532)
.-+.||+|+..+ .....+.| +| +|++-|+
T Consensus 112 ~~~~Cp~Cg~g~fma~h~dR~-~CGkC~~t~~ 142 (189)
T 2xzm_9 112 QQKGCPKCGPGIFMAKHYDRH-YCGKCHLTLK 142 (189)
T ss_dssp CSEECSTTCSSCEEEECSSCE-EETTTCCCBC
T ss_pred ccccCCccCCCccccCccCCC-ccCCceeEEE
Confidence 348999999654 34555544 66 5666553
No 196
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=30.89 E-value=46 Score=28.08 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=14.2
Q ss_pred eeecCcccCCCCCCChhh
Q 009562 179 QFCFSCLSEAHSPCSCSM 196 (532)
Q Consensus 179 ~fC~~C~~~~H~p~~C~~ 196 (532)
..|+.|...-|....|..
T Consensus 43 ~~C~~Cg~~GH~~~~C~~ 60 (124)
T 2lli_A 43 IQCSKCDEVGHYRSQCPH 60 (124)
T ss_dssp SCSSSSSCSSSSTTTSCC
T ss_pred ccccccCCCCCccccCcC
Confidence 479999988888777764
No 197
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=30.80 E-value=44 Score=23.91 Aligned_cols=28 Identities=14% Similarity=0.180 Sum_probs=24.4
Q ss_pred ccC-CHHHHHHHHHHcCCChHHHHHHHHh
Q 009562 4 LSL-REHHARTLLIHYRWDVEKLLAVLVE 31 (532)
Q Consensus 4 l~i-~~~~a~~LL~~~~W~~~~l~~~~~~ 31 (532)
+|. +.+.+..-|+..+||++..++.++.
T Consensus 22 MGF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 22 MGFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp TTCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 467 8888999999999999999998873
No 198
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=30.46 E-value=24 Score=28.48 Aligned_cols=53 Identities=26% Similarity=0.625 Sum_probs=36.0
Q ss_pred CCCceEEeccccceeeeec-CCCeeecCcccCCCCCCChhhhHHHHhhhhchHHHHHHHHcCccCCCCCCcceeecCCC
Q 009562 157 HCGNAIRVEEVEVCEVECA-CGAQFCFSCLSEAHSPCSCSMWDLWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGC 234 (532)
Q Consensus 157 ~C~~~i~~~~~~~~~v~C~-C~~~fC~~C~~~~H~p~~C~~~~~w~~~~~~e~~~~~~i~~~tK~CPkC~~~IEKn~GC 234 (532)
-|+--|....+...-|-|. |+...|..|.. +. ++...+.||.|+.+..+..|+
T Consensus 21 iCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyE----------YE---------------rkeG~q~CpqCktrYkr~kgs 74 (93)
T 1weo_A 21 ICGDQIGLTVEGDLFVACNECGFPACRPCYE----------YE---------------RREGTQNCPQCKTRYKRLRGS 74 (93)
T ss_dssp SSCCBCCBCSSSSBCCSCSSSCCCCCHHHHH----------HH---------------HHTSCSSCTTTCCCCCCCTTC
T ss_pred cccCccccCCCCCEEEeeeccCChhhHHHHH----------HH---------------HhccCccccccCCccccccCC
Confidence 5776666655555667885 99888877643 11 123458999999998865554
No 199
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=30.37 E-value=17 Score=31.12 Aligned_cols=38 Identities=26% Similarity=0.519 Sum_probs=22.7
Q ss_pred CcccccccccccccccccC--ceecCCCCcccHHHHHHHH
Q 009562 54 PLSSTVMCDICMEEVAGDK--ATKMDCGHCFCNDCWTEHF 91 (532)
Q Consensus 54 ~~~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~~yl 91 (532)
|......|..|-..|.... -.--.||..||..|....+
T Consensus 15 Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~ 54 (120)
T 1y02_A 15 PTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG 54 (120)
T ss_dssp -----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--
T ss_pred CccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCC
Confidence 3445568999998876321 1223899999999966543
No 200
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=30.26 E-value=3e+02 Score=27.93 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 009562 373 IKQHLFEDQQQQLEANVEKLSKFLEEPFD 401 (532)
Q Consensus 373 ~~~~lfe~~q~~lE~~~E~L~~~le~~~~ 401 (532)
...+.|...-.+||++++.|.+.|...+.
T Consensus 106 dndn~~~e~s~eLe~~i~~lk~~V~~q~~ 134 (390)
T 1deq_A 106 NNDNTFKQINEDLRSRIEILRRKVIEQVQ 134 (390)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34577888888999999999998886554
No 201
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=29.52 E-value=23 Score=28.00 Aligned_cols=36 Identities=19% Similarity=0.452 Sum_probs=25.5
Q ss_pred cccccccccccccccccC-cee-cCCCCcccHHHHHHH
Q 009562 55 LSSTVMCDICMEEVAGDK-ATK-MDCGHCFCNDCWTEH 90 (532)
Q Consensus 55 ~~~~~~C~IC~e~~~~~~-~~~-l~CgH~fC~~C~~~y 90 (532)
..+...|.+|...|.... -.- -.||+.||..|....
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 345678999999876422 122 379999999997654
No 202
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=29.51 E-value=26 Score=31.86 Aligned_cols=24 Identities=25% Similarity=0.930 Sum_probs=20.2
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCce
Q 009562 219 KPCPKCHKPVEKNGGCNLVSC-ICGQA 244 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC-~C~~~ 244 (532)
-.|++|+.++.+.+ ++|.| .||.-
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp~~g~~ 165 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCPECGRV 165 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECSSSCCE
T ss_pred ecccccCCceEECC--CEEECCCCCCE
Confidence 48999999998866 99999 59864
No 203
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=28.65 E-value=1.1e+02 Score=26.67 Aligned_cols=48 Identities=23% Similarity=0.526 Sum_probs=32.8
Q ss_pred cccccccccccccccCceec-CCCCcccHHHHHHHHHh----hh--ccCCccccccccccccc
Q 009562 57 STVMCDICMEEVAGDKATKM-DCGHCFCNDCWTEHFIV----KI--NEGQSKRIRCMAHKCNA 112 (532)
Q Consensus 57 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~----~i--~~g~~~~i~CP~~~C~~ 112 (532)
....|.||.+- .+.+.. .|-..||..|+..-+.. .| .+|. -.||. |..
T Consensus 62 ~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~---W~C~~--C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQ---WYCYI--CHP 116 (142)
T ss_dssp CBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTC---CCCTT--TCC
T ss_pred CCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCC---CEeec--ccC
Confidence 35679999874 344444 79999999999977642 22 3343 68988 654
No 204
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.59 E-value=55 Score=24.47 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=26.0
Q ss_pred ccCCHHHHHHHHHHcCC-ChHHHHHHHHh
Q 009562 4 LSLREHHARTLLIHYRW-DVEKLLAVLVE 31 (532)
Q Consensus 4 l~i~~~~a~~LL~~~~W-~~~~l~~~~~~ 31 (532)
+|.+...|+.-|+..+| |++..++-+++
T Consensus 29 MGF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 29 MGFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp HTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 58999999999999999 99999999985
No 205
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=28.57 E-value=22 Score=27.93 Aligned_cols=35 Identities=29% Similarity=0.731 Sum_probs=24.4
Q ss_pred ccccccccccccccccC-ce-ecCCCCcccHHHHHHH
Q 009562 56 SSTVMCDICMEEVAGDK-AT-KMDCGHCFCNDCWTEH 90 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~-~~-~l~CgH~fC~~C~~~y 90 (532)
.+...|.+|...|.... -. --.||..||..|-...
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 34567999999876321 11 2379999999997653
No 206
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=28.38 E-value=28 Score=24.42 Aligned_cols=29 Identities=10% Similarity=0.019 Sum_probs=26.1
Q ss_pred cccCCHHHHHHHHHHcCCChHHHHHHHHh
Q 009562 3 LLSLREHHARTLLIHYRWDVEKLLAVLVE 31 (532)
Q Consensus 3 ~l~i~~~~a~~LL~~~~W~~~~l~~~~~~ 31 (532)
-+|.+...|..-|..++||++...+-++.
T Consensus 13 ~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 13 ALGFPESLVIQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp TTTCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 36999999999999999999999988885
No 207
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=27.58 E-value=41 Score=29.91 Aligned_cols=41 Identities=22% Similarity=0.611 Sum_probs=30.5
Q ss_pred ccCCCCCCcceeecCCCCeeEec-cCceeecccccccCCCCCc
Q 009562 218 TKPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGATGRDHTW 259 (532)
Q Consensus 218 tK~CPkC~~~IEKn~GCnhMtC~-C~~~FCw~C~~~~~~~H~w 259 (532)
...|..|..+.-.-++. -..|. |++.+|-.|+.....+..|
T Consensus 68 ~~~C~~C~~~fg~l~~~-g~~C~~C~~~VC~~C~~~~~~~~~W 109 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNS-RRQCLECSLFVCKSCSHAHPEEQGW 109 (153)
T ss_dssp GTBCTTTCCBGGGCSSC-CEECTTTCCEECGGGEECCSSSSSC
T ss_pred CccchhhcCccccccCC-CCcCCCCCchhhcccccccCCCCcE
Confidence 47899999998766666 47885 9999999999654333334
No 208
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=27.51 E-value=40 Score=30.13 Aligned_cols=19 Identities=42% Similarity=1.127 Sum_probs=15.6
Q ss_pred cCCCCCCcceeecCCCCeeEec--cCc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCI--CGQ 243 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~--C~~ 243 (532)
|.||+|.-+++ ++-|+ ||+
T Consensus 111 k~CpnC~g~L~------~~~Crgh~Gy 131 (174)
T 1odh_A 111 KSCPNCNGPLK------LIPCRGHGGF 131 (174)
T ss_dssp SBCSSSCCBEE------EECCCTBTTB
T ss_pred CCCCCCCccee------eEeccCcCCC
Confidence 89999999998 67784 754
No 209
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.51 E-value=56 Score=26.02 Aligned_cols=29 Identities=14% Similarity=0.304 Sum_probs=26.4
Q ss_pred ccCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 009562 4 LSLREHHARTLLIHYRWDVEKLLAVLVEN 32 (532)
Q Consensus 4 l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 32 (532)
+|++.+.|+.-|+..+||++..++.+++.
T Consensus 31 MGF~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 31 MGFPREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp HTCCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 58899999999999999999999999964
No 210
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=26.94 E-value=24 Score=34.36 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=24.6
Q ss_pred cCCCCCCcceeecCCCCeeEe-ccCceeeccccccc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSC-ICGQAFCWLCGGAT 253 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC-~C~~~FCw~C~~~~ 253 (532)
-.||-|..++. +-|+- .|||.||-.|...|
T Consensus 182 l~CPIcl~~f~-----DPVts~~CGHsFcR~cI~~~ 212 (267)
T 3htk_C 182 LTCPITCKPYE-----APLISRKCNHVFDRDGIQNY 212 (267)
T ss_dssp SBCTTTSSBCS-----SEEEESSSCCEEEHHHHHHH
T ss_pred eECcCccCccc-----CCeeeCCCCCcccHHHHHHH
Confidence 58999999886 55777 59999999998775
No 211
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=26.35 E-value=17 Score=23.98 Aligned_cols=14 Identities=29% Similarity=0.769 Sum_probs=11.3
Q ss_pred cccccccccccccc
Q 009562 56 SSTVMCDICMEEVA 69 (532)
Q Consensus 56 ~~~~~C~IC~e~~~ 69 (532)
++.|.||||+.++.
T Consensus 3 ~EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 3 SEGFICPQCMKSLG 16 (34)
T ss_dssp SEEEECTTTCCEES
T ss_pred CcccCCcHHHHHcC
Confidence 45699999998865
No 212
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=26.19 E-value=44 Score=28.50 Aligned_cols=33 Identities=27% Similarity=0.663 Sum_probs=24.4
Q ss_pred ccCCCCCCcceeecCCCCeeEec-cCceeecccccc
Q 009562 218 TKPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGA 252 (532)
Q Consensus 218 tK~CPkC~~~IEKn~GCnhMtC~-C~~~FCw~C~~~ 252 (532)
...|+.|+...-- .--.-.|+ ||.-||..|...
T Consensus 69 ~~~C~~C~~~Fs~--~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSV--TVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCS--SSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCcccc--ccccccCCCCCeEEChHHhCC
Confidence 4689999987642 12335796 999999999865
No 213
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=26.08 E-value=44 Score=31.89 Aligned_cols=35 Identities=29% Similarity=0.786 Sum_probs=0.0
Q ss_pred HHHHHHcCccCCCCCCc-ceee---cCCCCeeEe-ccCcee
Q 009562 210 TVNWITVHTKPCPKCHK-PVEK---NGGCNLVSC-ICGQAF 245 (532)
Q Consensus 210 ~~~~i~~~tK~CPkC~~-~IEK---n~GCnhMtC-~C~~~F 245 (532)
|..|+..|. -||+|+. +|.+ |.-=-..+| .|+-+|
T Consensus 27 TE~Wv~~n~-yCPnCG~~~l~~f~nN~PVaDF~C~~C~Eey 66 (257)
T 4esj_A 27 TEDWVYRQS-YCPNCGNNPLNHFENNRPVADFYCNHCSEEF 66 (257)
T ss_dssp HHHHHHHHC-CCTTTCCSSCEEC----CCCEEECTTTCCEE
T ss_pred hHHHHHHCC-cCCCCCChhhhhccCCCcccccccCCcchhh
No 214
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=25.88 E-value=32 Score=33.40 Aligned_cols=24 Identities=42% Similarity=1.009 Sum_probs=17.6
Q ss_pred cCCCCCCcceee--cCCCCeeEe-ccC
Q 009562 219 KPCPKCHKPVEK--NGGCNLVSC-ICG 242 (532)
Q Consensus 219 K~CPkC~~~IEK--n~GCnhMtC-~C~ 242 (532)
++||.|+.+|++ .+|=.-.+| .|+
T Consensus 236 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 262 (266)
T 1ee8_A 236 LPCPACGRPVERRVVAGRGTHFCPTCQ 262 (266)
T ss_dssp SBCTTTCCBCEEEESSSCEEEECTTTT
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 799999999996 456555555 355
No 215
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=25.83 E-value=20 Score=29.72 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=17.0
Q ss_pred CCCCeeEeccCceeecccccccCC
Q 009562 232 GGCNLVSCICGQAFCWLCGGATGR 255 (532)
Q Consensus 232 ~GCnhMtC~C~~~FCw~C~~~~~~ 255 (532)
++|.-+.-.|+|.|+..|...|-.
T Consensus 64 ~~~~~~~~~C~H~FH~~Ci~~Wl~ 87 (106)
T 3dpl_R 64 EECTVAWGVCNHAFHFHCISRWLK 87 (106)
T ss_dssp -CCCEEEETTSCEEEHHHHHHHHT
T ss_pred ccceEeecccCcEECHHHHHHHHH
Confidence 445555567999999999888643
No 216
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=25.73 E-value=2.4e+02 Score=22.05 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 009562 378 FEDQQQQLEANVEKLSKFLE 397 (532)
Q Consensus 378 fe~~q~~lE~~~E~L~~~le 397 (532)
++..+..++.+++.|....+
T Consensus 51 l~~E~~~l~~ni~~lk~K~~ 70 (78)
T 3iv1_A 51 LDQEVAEVDKNIELLKKKDE 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555544
No 217
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.70 E-value=63 Score=25.60 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=26.5
Q ss_pred ccCCHHHHHHHHHHcCCChHHHHHHHHhc
Q 009562 4 LSLREHHARTLLIHYRWDVEKLLAVLVEN 32 (532)
Q Consensus 4 l~i~~~~a~~LL~~~~W~~~~l~~~~~~~ 32 (532)
+|.+...|+.-|+..+||++..++-+++.
T Consensus 39 MGF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 39 MGFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp HTCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 58899999999999999999999999863
No 218
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=25.68 E-value=36 Score=27.24 Aligned_cols=27 Identities=26% Similarity=0.785 Sum_probs=18.0
Q ss_pred cCCCCCCcc--e----eecCCCCeeEec-cCcee
Q 009562 219 KPCPKCHKP--V----EKNGGCNLVSCI-CGQAF 245 (532)
Q Consensus 219 K~CPkC~~~--I----EKn~GCnhMtC~-C~~~F 245 (532)
=.||.|+.. | .|..|=-++.|+ ||..|
T Consensus 24 F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~ 57 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF 57 (85)
T ss_dssp CCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEE
T ss_pred EcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeE
Confidence 479998876 2 245555677774 77766
No 219
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=25.44 E-value=28 Score=33.87 Aligned_cols=24 Identities=25% Similarity=0.757 Sum_probs=18.2
Q ss_pred cCCCCCCcceee--cCCCCeeEe-ccC
Q 009562 219 KPCPKCHKPVEK--NGGCNLVSC-ICG 242 (532)
Q Consensus 219 K~CPkC~~~IEK--n~GCnhMtC-~C~ 242 (532)
++||.|+.+|++ .+|=.-.+| .|+
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 269 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCPVCQ 269 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTS
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 799999999996 466556666 365
No 220
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=25.34 E-value=65 Score=29.32 Aligned_cols=30 Identities=7% Similarity=-0.148 Sum_probs=18.0
Q ss_pred ccccCCCCCCCCceEEeccccceeeeecCCCeeecCccc
Q 009562 148 MVKWCPSTPHCGNAIRVEEVEVCEVECACGAQFCFSCLS 186 (532)
Q Consensus 148 ~~~~CP~~p~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~ 186 (532)
....|| -|...+. + + |.-+||+.||..|-.
T Consensus 105 ~~f~CP---I~~elm~---D--P-V~~~~Ghtfer~~I~ 134 (179)
T 2f42_A 105 DYLCGK---ISFELMR---E--P-CITPSGITYDRKDIE 134 (179)
T ss_dssp GGGBCT---TTCSBCS---S--E-EECTTSCEEEHHHHH
T ss_pred Hhhccc---CccccCC---C--C-eECCCCCEECHHHHH
Confidence 344787 3544433 1 1 333799999988754
No 221
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=24.81 E-value=51 Score=24.18 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=14.9
Q ss_pred ccCCCCCCc-ceeecCCCCeeEec-cCc
Q 009562 218 TKPCPKCHK-PVEKNGGCNLVSCI-CGQ 243 (532)
Q Consensus 218 tK~CPkC~~-~IEKn~GCnhMtC~-C~~ 243 (532)
...||.|+. .|.....=.-+.|. ||.
T Consensus 11 ~~~Cp~C~~~~lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 11 RVTCPNHPDAILVEDYRAGDMICPECGL 38 (58)
T ss_dssp CCSBTTBSSSCCEECSSSCCEECTTTCC
T ss_pred cccCcCCCCCceeEeCCCCeEEeCCCCC
Confidence 357999976 55543333336663 654
No 222
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=24.74 E-value=38 Score=29.99 Aligned_cols=30 Identities=17% Similarity=0.396 Sum_probs=20.1
Q ss_pred ccCCCC--CCcceeecCCCCeeEe-ccCceeec
Q 009562 218 TKPCPK--CHKPVEKNGGCNLVSC-ICGQAFCW 247 (532)
Q Consensus 218 tK~CPk--C~~~IEKn~GCnhMtC-~C~~~FCw 247 (532)
-+.||+ |+.-+--..-=|-.+| +|++-+++
T Consensus 118 ~~~c~~~~cg~g~fma~h~~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANHKDRLYCGKCHSVYKV 150 (152)
T ss_dssp SCBCCSTTSCSSSBEEECSSCEEESSSSSCCEE
T ss_pred cCcCCCccCCCceEecccCCCcccCCCceEEEe
Confidence 479999 9986542211245789 79887765
No 223
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.60 E-value=77 Score=23.63 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=25.9
Q ss_pred ccCCHHHHHHHHHHc-CCChHHHHHHHHhc
Q 009562 4 LSLREHHARTLLIHY-RWDVEKLLAVLVEN 32 (532)
Q Consensus 4 l~i~~~~a~~LL~~~-~W~~~~l~~~~~~~ 32 (532)
+|.+...|+.-|+.. +||++..++-+++.
T Consensus 19 MGF~~~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 19 MGFPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp TTCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 588999999999999 79999999999864
No 224
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=24.55 E-value=29 Score=33.87 Aligned_cols=24 Identities=38% Similarity=0.933 Sum_probs=17.9
Q ss_pred cCCCCCCcceee--cCCCCeeEe-ccC
Q 009562 219 KPCPKCHKPVEK--NGGCNLVSC-ICG 242 (532)
Q Consensus 219 K~CPkC~~~IEK--n~GCnhMtC-~C~ 242 (532)
++||.|+.+|++ .+|=.-.+| .|+
T Consensus 246 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCeEEEEEECCCCeEECCCCC
Confidence 799999999996 456555666 364
No 225
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=24.24 E-value=67 Score=25.66 Aligned_cols=28 Identities=21% Similarity=0.540 Sum_probs=21.5
Q ss_pred cccccccccccccccCceecCCCCcccH
Q 009562 57 STVMCDICMEEVAGDKATKMDCGHCFCN 84 (532)
Q Consensus 57 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~ 84 (532)
....|..|-..+.....+...||..||.
T Consensus 24 ~~~rC~~C~kkvgl~~~f~CrCg~~FC~ 51 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECRCGNNFCA 51 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECTTCCEECT
T ss_pred cCccchhhCCeecccCCeEcCCCCEecc
Confidence 4568999998766434667789999996
No 226
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=24.24 E-value=22 Score=30.96 Aligned_cols=31 Identities=26% Similarity=0.548 Sum_probs=22.2
Q ss_pred cccccccccccccc-cCc--eecCCCCcccHHHH
Q 009562 57 STVMCDICMEEVAG-DKA--TKMDCGHCFCNDCW 87 (532)
Q Consensus 57 ~~~~C~IC~e~~~~-~~~--~~l~CgH~fC~~C~ 87 (532)
..-.|.+|..++.. ... .-..|.|.+|..|=
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 35689999999842 222 22389999999993
No 227
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=24.12 E-value=31 Score=33.56 Aligned_cols=24 Identities=25% Similarity=0.715 Sum_probs=17.7
Q ss_pred cCCCCCCcceee--cCCCCeeEe-ccC
Q 009562 219 KPCPKCHKPVEK--NGGCNLVSC-ICG 242 (532)
Q Consensus 219 K~CPkC~~~IEK--n~GCnhMtC-~C~ 242 (532)
++||.|+.+|++ .+|=.-.+| .|+
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 799999999996 456555566 364
No 228
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=23.56 E-value=47 Score=28.68 Aligned_cols=29 Identities=28% Similarity=0.834 Sum_probs=20.3
Q ss_pred cCccCCCCCCcceeecCCCCeeEec-cCcee
Q 009562 216 VHTKPCPKCHKPVEKNGGCNLVSCI-CGQAF 245 (532)
Q Consensus 216 ~~tK~CPkC~~~IEKn~GCnhMtC~-C~~~F 245 (532)
...-.||+|+....=.+|= .+.|. |+++|
T Consensus 25 ~~lP~CP~C~seytYeDg~-l~vCPeC~hEW 54 (138)
T 2akl_A 25 STLPPCPQCNSEYTYEDGA-LLVCPECAHEW 54 (138)
T ss_dssp CCSCCCTTTCCCCCEECSS-SEEETTTTEEE
T ss_pred ccCCCCCCCCCcceEecCC-eEECCcccccc
Confidence 3457999999877665663 36674 77776
No 229
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=23.46 E-value=31 Score=33.37 Aligned_cols=24 Identities=29% Similarity=0.692 Sum_probs=17.9
Q ss_pred cCCCCCCcceee--cCCCCeeEe-ccC
Q 009562 219 KPCPKCHKPVEK--NGGCNLVSC-ICG 242 (532)
Q Consensus 219 K~CPkC~~~IEK--n~GCnhMtC-~C~ 242 (532)
++||.|+.+|++ .+|=.-.+| .|+
T Consensus 235 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 235 EPCERCGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeEEEEECCCCeEECCCCC
Confidence 689999999986 456555666 365
No 230
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=23.28 E-value=48 Score=30.97 Aligned_cols=32 Identities=28% Similarity=0.699 Sum_probs=24.1
Q ss_pred cCCCCCCcceeecCCCCeeEec-cCceeecccccc
Q 009562 219 KPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGA 252 (532)
Q Consensus 219 K~CPkC~~~IEKn~GCnhMtC~-C~~~FCw~C~~~ 252 (532)
..|+.|+...-- .--.-.|+ ||.-||..|...
T Consensus 162 ~~C~~C~~~F~~--~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 162 RVCHRCRVEFTF--TNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp SBCTTTCCBCCS--SSCCEECTTTCCEECSTTSCE
T ss_pred CccCCCCCccCC--cccccccCCcCCEEChHHhCC
Confidence 589999987641 22346786 999999999865
No 231
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.99 E-value=32 Score=27.15 Aligned_cols=34 Identities=24% Similarity=0.511 Sum_probs=23.7
Q ss_pred ccccccccccccccccC-ce-ecCCCCcccHHHHHH
Q 009562 56 SSTVMCDICMEEVAGDK-AT-KMDCGHCFCNDCWTE 89 (532)
Q Consensus 56 ~~~~~C~IC~e~~~~~~-~~-~l~CgH~fC~~C~~~ 89 (532)
.+...|.+|...|.... -. --.||..||..|-..
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 34568999998876321 11 237999999999554
No 232
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=21.96 E-value=35 Score=30.39 Aligned_cols=31 Identities=16% Similarity=0.497 Sum_probs=22.7
Q ss_pred ccccccccccccccc--Cc-eecCCCCcccHHHH
Q 009562 57 STVMCDICMEEVAGD--KA-TKMDCGHCFCNDCW 87 (532)
Q Consensus 57 ~~~~C~IC~e~~~~~--~~-~~l~CgH~fC~~C~ 87 (532)
..-.|.+|..+|..- .- .-..|.|.+|..|=
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 467899999986431 22 22389999999995
No 233
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=21.45 E-value=36 Score=26.03 Aligned_cols=32 Identities=22% Similarity=0.520 Sum_probs=22.5
Q ss_pred cccccccccccccC-cee-cCCCCcccHHHHHHH
Q 009562 59 VMCDICMEEVAGDK-ATK-MDCGHCFCNDCWTEH 90 (532)
Q Consensus 59 ~~C~IC~e~~~~~~-~~~-l~CgH~fC~~C~~~y 90 (532)
..|.+|...|.... -.- -.||..||..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 37999998876321 122 379999999997543
No 234
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=21.43 E-value=58 Score=30.22 Aligned_cols=63 Identities=17% Similarity=0.294 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCchhhhhhhCC-cccCCCCCCCCcccccccccccccccccCceecCCCCcccHHHHH
Q 009562 23 EKLLAVLVENGKESLFNEAGV-TVIDDADPMLPLSSTVMCDICMEEVAGDKATKMDCGHCFCNDCWT 88 (532)
Q Consensus 23 ~~l~~~~~~~~~~~~~~~~gl-~~~~~~~~~~~~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~ 88 (532)
+.+++.+...+.+.+|.-..+ ....+. ..+......|++|-|.+........ =|-.+|.+|..
T Consensus 138 ~~~~~~il~~~~eelf~v~~v~~~~~p~--~~~~~~~~~C~~CGE~~~~~~~~~~-~g~~~C~~C~~ 201 (204)
T 2gvi_A 138 DPVLEWISSLEDEEIFEYREIDGFTFEP--VKKNGAKVRCDVCGEYTYEADAKLL-NGKPVCKPDYY 201 (204)
T ss_dssp HHHHHHHHHSCHHHHEEEEEESSCCCCC--CCCCCCEEECTTTCCEEEGGGCEEE-TTEEECHHHHH
T ss_pred HHHHHHHHhCChhHeEEEEEeeccCCCC--CCCCCCceECCCCCCchhhcceeee-CCcEEChhhhc
Confidence 455666666665777765444 322211 1122346889999999874433333 37789999974
No 235
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.09 E-value=67 Score=23.20 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=22.9
Q ss_pred ccCCHHH-HHHHHHHcCCChHHHHHHHHh
Q 009562 4 LSLREHH-ARTLLIHYRWDVEKLLAVLVE 31 (532)
Q Consensus 4 l~i~~~~-a~~LL~~~~W~~~~l~~~~~~ 31 (532)
+|++..+ ++.-|+..+||++..++.++.
T Consensus 19 MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 19 MGFLNREANLQALIATGGDVDAAVEKLRQ 47 (54)
T ss_dssp HTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3665444 589999999999999999985
No 236
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=20.99 E-value=57 Score=28.27 Aligned_cols=36 Identities=28% Similarity=0.625 Sum_probs=27.8
Q ss_pred CccCCCCCCcceeecCCCCeeEec-cCceeeccccccc
Q 009562 217 HTKPCPKCHKPVEKNGGCNLVSCI-CGQAFCWLCGGAT 253 (532)
Q Consensus 217 ~tK~CPkC~~~IEKn~GCnhMtC~-C~~~FCw~C~~~~ 253 (532)
+...|..|..+.-.-++.. ..|. |++.+|-.|+...
T Consensus 54 ~~~~C~~C~~~~g~l~~~g-~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSAS-VVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCE-EECTTTCCEEETTSEEEC
T ss_pred CCccccccCCCcccccCCC-CCCCCCCcccccccCCcc
Confidence 3478999999886555554 6784 9999999999863
No 237
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=20.77 E-value=42 Score=24.95 Aligned_cols=27 Identities=30% Similarity=0.728 Sum_probs=19.6
Q ss_pred ccccccccccccCceec-CCCCcccHHH
Q 009562 60 MCDICMEEVAGDKATKM-DCGHCFCNDC 86 (532)
Q Consensus 60 ~C~IC~e~~~~~~~~~l-~CgH~fC~~C 86 (532)
.|-.|...++....+.. .|++.||.+|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dC 44 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDC 44 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHH
T ss_pred cccccCcccCCCccEECCccCcCcccch
Confidence 48888888753222333 7999999999
No 238
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=20.72 E-value=42 Score=27.60 Aligned_cols=17 Identities=18% Similarity=0.626 Sum_probs=14.0
Q ss_pred cccHHHHHHHHHhhhcc
Q 009562 81 CFCNDCWTEHFIVKINE 97 (532)
Q Consensus 81 ~fC~~C~~~yl~~~i~~ 97 (532)
-||++|+..|+..+-.+
T Consensus 42 GFCRNCLskWy~~aA~e 58 (105)
T 2o35_A 42 GFCRNCLSNWYREAAEA 58 (105)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 49999999999887643
No 239
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=20.37 E-value=43 Score=27.48 Aligned_cols=16 Identities=19% Similarity=0.656 Sum_probs=13.6
Q ss_pred cccHHHHHHHHHhhhc
Q 009562 81 CFCNDCWTEHFIVKIN 96 (532)
Q Consensus 81 ~fC~~C~~~yl~~~i~ 96 (532)
-||++|+..|+..+-.
T Consensus 41 GFCRNCLskWy~~aA~ 56 (104)
T 3fyb_A 41 DFCRNCLAKWLMEAAT 56 (104)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4999999999987654
Done!