Query 009563
Match_columns 532
No_of_seqs 467 out of 2274
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 08:00:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009563.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009563hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 5.1E-42 1.8E-46 346.7 37.6 424 50-528 7-481 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 2.7E-36 9.2E-41 301.4 29.1 390 51-511 24-434 (451)
3 3o7q_A L-fucose-proton symport 100.0 9.3E-34 3.2E-38 281.9 33.9 365 52-509 23-431 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 2E-30 6.8E-35 261.8 23.2 382 117-510 47-471 (491)
5 2gfp_A EMRD, multidrug resista 100.0 6.1E-31 2.1E-35 255.9 15.9 315 113-485 24-346 (375)
6 2cfq_A Lactose permease; trans 99.9 2.6E-27 8.9E-32 233.2 15.8 354 114-518 33-408 (417)
7 2xut_A Proton/peptide symporte 99.9 3E-26 1E-30 233.1 18.1 145 114-262 38-196 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.4 7.4E-12 2.5E-16 124.2 19.7 144 116-263 280-432 (451)
9 2cfq_A Lactose permease; trans 99.3 7.4E-12 2.5E-16 122.8 13.8 145 125-270 257-405 (417)
10 3o7q_A L-fucose-proton symport 99.2 1.8E-10 6.2E-15 113.7 17.2 137 115-258 286-426 (438)
11 4aps_A DI-OR tripeptide H+ sym 99.1 1.1E-09 3.7E-14 109.9 15.6 131 374-508 56-194 (491)
12 2gfp_A EMRD, multidrug resista 99.1 1.4E-09 4.7E-14 105.0 15.4 150 362-515 22-180 (375)
13 4gc0_A D-xylose-proton symport 99.1 6E-10 2E-14 111.8 13.3 153 113-269 301-467 (491)
14 2xut_A Proton/peptide symporte 99.0 2.9E-08 9.8E-13 100.4 19.4 133 373-509 55-197 (524)
15 2g9p_A Antimicrobial peptide l 33.9 9.1 0.00031 18.6 0.1 14 146-160 2-15 (26)
16 3arc_T Photosystem II reaction 31.4 63 0.0022 17.5 3.1 11 260-270 18-28 (32)
17 3l1l_A Arginine/agmatine antip 24.6 3.1E+02 0.011 25.7 9.4 11 155-165 81-91 (445)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=5.1e-42 Score=346.70 Aligned_cols=424 Identities=21% Similarity=0.314 Sum_probs=304.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccc-----h
Q 009563 50 GPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFC-----E 124 (532)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~ 124 (532)
+++.|.+.++++++.++.++|...++.. . |.+.++++... .
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~--------~--------------------------~~~~~~~~~~~~~~~~~ 52 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGT--------V--------------------------ESLNTVFVAPQNLSESA 52 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGT--------H--------------------------HHHHHHHTGGGCCCHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHH--------H--------------------------HHHHHHhcCCCCCCccc
Confidence 3667778788889999999998877665 3 66666664321 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHh------------------hcchHHHHHH
Q 009563 125 EKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTA------------------FSPNYSTYVV 186 (532)
Q Consensus 125 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~------------------~~~~~~~l~~ 186 (532)
+..+.|++.+++.+|..+|++++|+++|| +|||++++++.+++.+++++++ +++|++++++
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~ 131 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVI 131 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHH
Confidence 56788999999999999999999999999 9999999999999999999998 4789999999
Q ss_pred HHHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-----------chHHHHHHHHHHHH
Q 009563 187 LRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ-----------TWRALYIASSIPSI 255 (532)
Q Consensus 187 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~-----------~wr~~f~~~~~~~~ 255 (532)
+|+++|+|.|+..+..+.+++|+.|+++|++..++.+.+..+|.++++.++.... +||+.+.+..++.+
T Consensus 132 ~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (491)
T 4gc0_A 132 YRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPAL 211 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999998887653 58888888777777
Q ss_pred HHHHHHhcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhh
Q 009563 256 LFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVID 335 (532)
Q Consensus 256 ~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (532)
+.. +..+++||||+|+..+++.+++++.+++....+... ++.. + .+ .. ....+.......
T Consensus 212 ~~~-~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~-----------~~~~--~-~~----~~-~~~~~~~~~~~~ 271 (491)
T 4gc0_A 212 LFL-MLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLAT-----------QAVQ--E-IK----HS-LDHGRKTGGRLL 271 (491)
T ss_dssp HHH-HHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHH-----------HHHH--H-HH----HH-HHHHHHHTTHHH
T ss_pred hhh-hhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhH-----------HHHH--H-HH----HH-HHhhhhhhhHHH
Confidence 766 778899999999999999999998888764431100 0000 0 00 00 000000111222
Q ss_pred hhcChHHHHHHHHHHHHHHH-HHHHHHHhhhccccCc---chHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHH
Q 009563 336 VIKSPLTRIRLFLAVTINFL-CSVVYYGISLNVVNLQ---TNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWF 411 (532)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~ 411 (532)
.++.+..........+..+. .....+..+......+ ..........++..+++.++++++.||+|||+.++.+...
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~ 351 (491)
T 4gc0_A 272 MFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALG 351 (491)
T ss_dssp HSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHH
Confidence 33333333332222222221 1222222222222222 2233444566677888999999999999999999988888
Q ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHHHH-HHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----
Q 009563 412 SGFFCLLGSLVKNNGIWKIVRMICGVMGIFG-VAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV----- 485 (532)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~----- 485 (532)
+.++++.+.............++...+...+ .....++.+.+.+|++|++.|+++.|+.+..++++++++|.+.
T Consensus 352 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~ 431 (491)
T 4gc0_A 352 MAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDK 431 (491)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCH
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887776655432222111233333333333 3334567889999999999999999999999999988887664
Q ss_pred ------HhhhhhHHHHHHHHHHHHHHHH-hhccCCCCCChhhhHHhhhhc
Q 009563 486 ------VLGGWLPFAVFAACGIIGGLFA-FYLPETLNKPLYDTMAGMKEG 528 (532)
Q Consensus 486 ------~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~ 528 (532)
..+....|++++++++++.++. +++||||+|++||.++..|++
T Consensus 432 ~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~ 481 (491)
T 4gc0_A 432 NSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPE 481 (491)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC--
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCC
Confidence 1234556788888888877765 688999999999877655543
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=2.7e-36 Score=301.42 Aligned_cols=390 Identities=15% Similarity=0.088 Sum_probs=295.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhhHHH
Q 009563 51 PWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVG 130 (532)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~ 130 (532)
+.+|+.+..++++.+..+++....... . |.+.+++ + +..+.|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--------------------------~~~~~~~-~---s~~~~g 65 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALA--------M--------------------------PYLVEQG-F---SRGDLG 65 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHH--------H--------------------------HHTTSST-T---CSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------H--------------------------HHHHHHh-c---cHhHHH
Confidence 456778888888888888887766665 4 8888999 8 999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhh----cchHHHHHHHHHHHHhhccccchhhhhee
Q 009563 131 LVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAF----SPNYSTYVVLRMLTGFSTGGVGLCAFVLA 206 (532)
Q Consensus 131 ~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 206 (532)
++.+++.++..++++++|+++|| +|||+++.++.++.+++.+++++ +++++.++++|+++|++.+...+...+++
T Consensus 66 ~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i 144 (451)
T 1pw4_A 66 FALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 144 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHH
Confidence 99999999999999999999999 99999999999999999999999 99999999999999999999999999999
Q ss_pred ecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---c-hHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHHH
Q 009563 207 TEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---T-WRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAM 282 (532)
Q Consensus 207 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~-wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~ 282 (532)
.|++|+++|++++++...+..+|.++++.+++.+. + ||+.|++.+++.++..++.++++||+|+....+++.+
T Consensus 145 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 221 (451)
T 1pw4_A 145 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE--- 221 (451)
T ss_dssp HTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT---
T ss_pred HHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhh---
Confidence 99999999999999999999999999999998765 7 9999999999888877677788899875321111000
Q ss_pred HHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHHHHHHHHHHH
Q 009563 283 KIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYG 362 (532)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (532)
... +.+++. . ++..+.........++.++++.++...+..++..+........
T Consensus 222 -----------------~~~--~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (451)
T 1pw4_A 222 -----------------YKN--DYPDDY-N-------EKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDW 274 (451)
T ss_dssp -----------------TCC--C---------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------hcc--cccccc-h-------hhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000000 0 0000000001111466778887776666666655555444445
Q ss_pred hhhcccc-CcchH---HHHHHHHHHHHHHHHHHHHHHHhhh--CCchhHHHHHHHHH-HHHHHHHhhhccchhHHHHHHH
Q 009563 363 ISLNVVN-LQTNL---YLNVLVNAVAEMPAFTITAVLLDKL--GRKPMTIGTLWFSG-FFCLLGSLVKNNGIWKIVRMIC 435 (532)
Q Consensus 363 ~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~l~d~~--gr~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 435 (532)
.+.+..+ .+.+. ........++.+++.++.+++.||+ +||+.+..+..+.. ++++++.+....+.+ ...+.
T Consensus 275 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 352 (451)
T 1pw4_A 275 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPT--VDMIC 352 (451)
T ss_dssp HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHH--HHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHH--HHHHH
Confidence 5555544 44333 3444556677889999999999999 99988887776666 555555444332322 45556
Q ss_pred HHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHH-HHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHHhh
Q 009563 436 GVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQL-GAILAPFVV-----VLGGWLPFAVFAACGIIGGLFAFY 509 (532)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 509 (532)
.++.+++.+...+....+..|.+|++.|+++.|+.+....+ |..++|.+. ..++...|++.+++.+++.++.++
T Consensus 353 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 353 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 66777777788888889999999999999999999999999 999999887 235677888888888877776665
Q ss_pred cc
Q 009563 510 LP 511 (532)
Q Consensus 510 l~ 511 (532)
++
T Consensus 433 ~~ 434 (451)
T 1pw4_A 433 VM 434 (451)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=9.3e-34 Score=281.90 Aligned_cols=365 Identities=15% Similarity=0.084 Sum_probs=274.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhhHHHH
Q 009563 52 WQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVGL 131 (532)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~ 131 (532)
.++..+.++++..+..+++....... . |.+.+++|+ +..+.|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--------------------------~~~~~~~g~---s~~~~g~ 65 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDIL--------L--------------------------PQFQQAFTL---TNFQAGL 65 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHH--------H--------------------------HHHHHHSCC---CSHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHH--------H--------------------------HHHHHHcCC---CHHHHHH
Confidence 34555666667777778776666665 4 889999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHH---hhcchHHHHHHHHHHHHhhccccchhhhheeec
Q 009563 132 VQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLT---AFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATE 208 (532)
Q Consensus 132 ~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 208 (532)
+.+++.+++.++++++|+++|| +|||++++++.++.+++.+++ +++++++.++++|++.|++.+...+...+++.|
T Consensus 66 ~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~ 144 (438)
T 3o7q_A 66 IQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTV 144 (438)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHH
Confidence 9999999999999999999999 999999999999999999999 889999999999999999999999999999999
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----c-------------------------hHHHHHHHHHHHHHHHH
Q 009563 209 PVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----T-------------------------WRALYIASSIPSILFLL 259 (532)
Q Consensus 209 ~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----~-------------------------wr~~f~~~~~~~~~~~~ 259 (532)
++|+++|++++++.+.+.++|..+++.+++.+. + ||+.|++.+++.++..+
T Consensus 145 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 224 (438)
T 3o7q_A 145 LGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVAL 224 (438)
T ss_dssp SSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988765 2 99999888777666553
Q ss_pred HHhc-ccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhc
Q 009563 260 IILP-FLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIK 338 (532)
Q Consensus 260 ~~~~-~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (532)
+.++ ..||+++.. ++ + ++++..+.+++++++
T Consensus 225 ~~~~~~~p~~~~~~---~~------------------------------------~---------~~~~~~~~~~~~~~~ 256 (438)
T 3o7q_A 225 LIMLTKFPALQSDN---HS------------------------------------D---------AKQGSFSASLSRLAR 256 (438)
T ss_dssp HHHHCCCCCCTTTC---CC------------------------------------C---------SSTTSHHHHHHHHTT
T ss_pred HHHHHcCCcccccc---cc------------------------------------c---------ccccchhhhHHHHHh
Confidence 3332 234443100 00 0 000011225667888
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhc-cccC-cch---HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHH
Q 009563 339 SPLTRIRLFLAVTINFLCSVVYYGISLN-VVNL-QTN---LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSG 413 (532)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~ 413 (532)
++.++...+..++............+.+ ..+. +.+ .........++.+++.++.+++.||++||+.+..+.++..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAM 336 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 8887776666555555443333333333 3332 322 3344455567788899999999999999999998888888
Q ss_pred HHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----Hhh
Q 009563 414 FFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLG 488 (532)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~ 488 (532)
++++++.+..+. ...+..++.+++.+..++...++..|.+|++ ++.+.++.. ...+|+.++|.+. ..+
T Consensus 337 ~~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 337 ALCLISAFAGGH-----VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHHHHHHHCCHH-----HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCc-----HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 777766654332 2334446777888888999999999999977 888888877 6778999998887 445
Q ss_pred -hhhHHHHHHHHHHHHHHHHhh
Q 009563 489 -GWLPFAVFAACGIIGGLFAFY 509 (532)
Q Consensus 489 -~~~~~~~~~~~~~~~~~~~~~ 509 (532)
+...|++.+++.++..++.+.
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3o7q_A 410 NIPTAELIPALCFAVIFIFARF 431 (438)
T ss_dssp SSGGGGHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 666777665554444433333
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=2e-30 Score=261.78 Aligned_cols=382 Identities=12% Similarity=0.015 Sum_probs=242.4
Q ss_pred ecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCC-CchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhc
Q 009563 117 TQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRL-GRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFST 195 (532)
Q Consensus 117 ~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 195 (532)
+|+|+ +..+.+++.+++.++..++++++|+++|| + |||+++.++.++.+++.+++++++|++.++++|+++|++.
T Consensus 47 ~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 122 (491)
T 4aps_A 47 GDLHI---TRATAASIMAIYASMVYLSGTIGGFVADR-IIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGT 122 (491)
T ss_dssp TSCCS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHH
T ss_pred hhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 44999 99999999999999999999999999997 4 9999999999999999999999999999999999999999
Q ss_pred cccchhhhheeecccCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCch
Q 009563 196 GGVGLCAFVLATEPVGPSK--RGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESPR 270 (532)
Q Consensus 196 ~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp~ 270 (532)
+...+...+++.|++|+++ |+.++++.+.+.++|..++|.+++.+. +||+.|++.++..++..++.++..|+..+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 123 GFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp HHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 9999999999999999988 777888899999999999999999886 99999999887776665444433332211
Q ss_pred ----hHhhcCCHHHHHHHHHH--------------HHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccc
Q 009563 271 ----WYLVRGKLNEAMKIMRA--------------IAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGS 332 (532)
Q Consensus 271 ----~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (532)
....+.+.++.++..+. ....+..+.++..... ....... ....... ..+.....
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~---~~~~~~~~ 275 (491)
T 4aps_A 203 PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLL--TIVAIAI--PVFYFAW---MISSVKVT 275 (491)
T ss_dssp SCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHH--HHHHHHH--HHHHHHH---HC------
T ss_pred ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhh--hHHHHHH--HHHHHHH---Hhhccccc
Confidence 00011122222222221 1111111110000000 0000000 0000000 00000000
Q ss_pred hhhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccc-Cc---chHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHH--
Q 009563 333 VIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNVVN-LQ---TNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTI-- 406 (532)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~-- 406 (532)
..+..+..............+..........+.+..+ .+ ...........+..+++.++.+++.||++||+...
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~ 355 (491)
T 4aps_A 276 STEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPT 355 (491)
T ss_dssp ------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchH
Confidence 0000011111112222222222221111111222111 11 12223334455667778889999999999986544
Q ss_pred ---HHHHHHHHHHHHHHhhh------ccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHH
Q 009563 407 ---GTLWFSGFFCLLGSLVK------NNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLG 477 (532)
Q Consensus 407 ---~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g 477 (532)
.+..+.+++++++.... .....+ ...+..++.+++.+...+....++.|.+|++.|+++.|+.+....+|
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g 434 (491)
T 4aps_A 356 KFAVGLMFAGLSFLLMAIPGALYGTSGKVSPL-WLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVG 434 (491)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTH-HHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccHH-HHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 66666666665555432 111111 45566777888888888999999999999999999999999999999
Q ss_pred HHHHHHHH----HhhhhhHHHHHHHHHHHHHHHHhhc
Q 009563 478 AILAPFVV----VLGGWLPFAVFAACGIIGGLFAFYL 510 (532)
Q Consensus 478 ~~i~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~l 510 (532)
..++|.+. ..++...|.+++++.+++.++.+++
T Consensus 435 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (491)
T 4aps_A 435 SALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFL 471 (491)
T ss_dssp HHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887 2345667777777777766665544
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.97 E-value=6.1e-31 Score=255.86 Aligned_cols=315 Identities=11% Similarity=0.049 Sum_probs=236.5
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 192 (532)
|.+.+++|. +..+.+++.+++.++..+++++.|+++|| +|||+++.++.++.+++.++.+++++++.+++.|++.|
T Consensus 24 ~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g 99 (375)
T 2gfp_A 24 ADMARDLNV---REGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQG 99 (375)
T ss_dssp HHHHTTSSS---TTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 788999999 99999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCc
Q 009563 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESP 269 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp 269 (532)
++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+. +||+.|++.+++.++..+...+++||++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 100 MGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 9999999999999999999999999999999999999999999999887 8999999999888887755777788875
Q ss_pred hhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHH
Q 009563 270 RWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLA 349 (532)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (532)
+... + +++.+.++++.+++|.++...+..
T Consensus 180 ~~~~--~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 208 (375)
T 2gfp_A 180 PVDA--P-------------------------------------------------RTRLLTSYKTLFGNSGFNCYLLML 208 (375)
T ss_dssp TTTC--C-------------------------------------------------CCCTTTCSTHHHHHHHHHHHHHHH
T ss_pred CCCc--c-------------------------------------------------cccHHHHHHHHhcCcchHHHHHHH
Confidence 3100 0 001112456677777766655555
Q ss_pred HHHHHHHHHHHHHhhhcccc-CcchH---HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHH-HHHHHHHHHhhhc
Q 009563 350 VTINFLCSVVYYGISLNVVN-LQTNL---YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWF-SGFFCLLGSLVKN 424 (532)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~-~~~~~~~~~~~~~ 424 (532)
++............+.+..+ .+.+. ........++.+++.++.+++.||+++ .+..+... ...+...+.....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~--~~~~~~~~~~~~~~~~~~~~~~ 286 (375)
T 2gfp_A 209 IGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST--LMWQSVICCLLAGLLMWIPDWF 286 (375)
T ss_dssp HHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH--HHHHHHHHHHHTSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhh
Confidence 55444444444444444433 22222 223334445666777777777777766 22222222 2222221111110
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 425 NGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
.....+...+..++.+++.+...+....+..|..| +.|+++.|+.+....+|..++|.+.
T Consensus 287 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~ 346 (375)
T 2gfp_A 287 GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLS 346 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTC
T ss_pred ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHH
Confidence 01111144566677788888889999999999998 8899999999999999998888766
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.95 E-value=2.6e-27 Score=233.20 Aligned_cols=354 Identities=13% Similarity=0.079 Sum_probs=220.3
Q ss_pred ceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHH---HHHhhcchHH-HHHHHHH
Q 009563 114 STVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFG---CLTAFSPNYS-TYVVLRM 189 (532)
Q Consensus 114 ~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~---~~~~~~~~~~-~l~~~r~ 189 (532)
.+++++|+ +..+.|++.+.+.+++.++++++|+++|| +|||++++++..+.+++. ....+++... .++..++
T Consensus 33 ~l~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (417)
T 2cfq_A 33 WLHDINHI---SKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSI 108 (417)
T ss_dssp HHHTTTCC---CTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHH
T ss_pred HHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677999 99999999999999999999999999999 999999999888776532 2223332221 2345566
Q ss_pred HHHhhccccchhhhheeecccCC--CchhHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHhccc
Q 009563 190 LTGFSTGGVGLCAFVLATEPVGP--SKRGAAGMSTFYFFSTGIALLSGIAYIFQ--TWRALYIASSIPSILFLLIILPFL 265 (532)
Q Consensus 190 l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~l~~~l~--~wr~~f~~~~~~~~~~~~~~~~~~ 265 (532)
+.|++.+...+.....+.++.++ ++|+...+....+..+|..++|.+++.+. +||+.|++.++..++.. +..++.
T Consensus 109 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~-~~~~~~ 187 (417)
T 2cfq_A 109 VGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILA-VLLFFA 187 (417)
T ss_dssp GGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHH-HHSCSS
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH-HHHHHc
Confidence 66666555544444444445443 34566667777777888899999888776 89999998877765544 334444
Q ss_pred ccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHH
Q 009563 266 PESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIR 345 (532)
Q Consensus 266 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (532)
+|+|+. +.+. ++ +++ .+. ++.....++++++++.++..
T Consensus 188 ~~~~~~---~~~~------------------~~--------~~~----~~~---------~~~~~~~~~~~~~~~~~~~~ 225 (417)
T 2cfq_A 188 KTDAPS---SATV------------------AN--------AVG----ANH---------SAFSLKLALELFRQPKLWFL 225 (417)
T ss_dssp CCCCSC---SSCS------------------SS--------SSS----SCC---------CCCCHHHHHHHTTCHHHHHH
T ss_pred Cccccc---cccc------------------cc--------ccc----ccc---------ccccHHHHHHHhcCCchhhH
Confidence 432210 0000 00 000 000 00011134567788776654
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccc-Cc-----c-hHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHH
Q 009563 346 LFLAVTINFLCSVVYYGISLNVVN-LQ-----T-NLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLL 418 (532)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~-~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~ 418 (532)
.+..+.............+.+... .+ . ..........+..+++.++.+++.||+|||+.+..+..+.++..+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~ 305 (417)
T 2cfq_A 226 SLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIG 305 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Confidence 443232222211111112222111 11 1 1122233444567788999999999999999988888777776655
Q ss_pred HHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHH-HHHHHHHHHHHHHHH-----HhhhhhH
Q 009563 419 GSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCA-TQAAQLGAILAPFVV-----VLGGWLP 492 (532)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~~g~~i~p~~~-----~~~~~~~ 492 (532)
+.+..+ .+ ..++...+.+++.....+..+.++.|.+|++.|+++.++. +....+|++++|.+. ..++...
T Consensus 306 ~~~~~~--~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~ 381 (417)
T 2cfq_A 306 SSFATS--AL--EVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGA 381 (417)
T ss_dssp HTTCCS--HH--HHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHH
T ss_pred HHHhcc--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHH
Confidence 544322 21 3334444555555556666788999999999999999984 777888998888877 2355667
Q ss_pred HHHHHHHHHHHHHHHh-hccCCCCCCh
Q 009563 493 FAVFAACGIIGGLFAF-YLPETLNKPL 518 (532)
Q Consensus 493 ~~~~~~~~~~~~~~~~-~l~~~~~~~~ 518 (532)
|.+.+++.+++.++.+ ..+|+++.++
T Consensus 382 f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 382 YLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 7777877777766654 4565554443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.94 E-value=3e-26 Score=233.09 Aligned_cols=145 Identities=12% Similarity=0.095 Sum_probs=131.3
Q ss_pred ceeeccc------ccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCC-CchHHHHHHHHHHHHHHHHHhhcc-hHHHHH
Q 009563 114 STVTQWG------LFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRL-GRKGSLTVVCMMNAVFGCLTAFSP-NYSTYV 185 (532)
Q Consensus 114 ~i~~~~~------~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~ 185 (532)
.+.+++| + +..+.+++.+++.++..++.+++|+++|| + |||+++.++.++.+++.++.++++ +++.++
T Consensus 38 ~l~~~~~~~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (524)
T 2xut_A 38 FLMTALLLSIPEEL---RGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFY 113 (524)
T ss_dssp HHHHSCSSCCSSST---TTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHHhcccccccc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 3556677 8 99999999999999999999999999999 9 999999999999999999999999 999999
Q ss_pred HHHHHHHhhccccchhhhheeecccCCCchhHHHHH---HHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHH
Q 009563 186 VLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMS---TFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLL 259 (532)
Q Consensus 186 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~ 259 (532)
+.|++.|++.+...+...+++.|++|+++|+++.+. ...+.++|.++++.+++.+. +||+.|++.+++.++..+
T Consensus 114 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~ 193 (524)
T 2xut_A 114 TGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATV 193 (524)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999876666 88999999999999888776 999999998888776654
Q ss_pred HHh
Q 009563 260 IIL 262 (532)
Q Consensus 260 ~~~ 262 (532)
+.+
T Consensus 194 ~~~ 196 (524)
T 2xut_A 194 FFW 196 (524)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.42 E-value=7.4e-12 Score=124.24 Aligned_cols=144 Identities=19% Similarity=0.154 Sum_probs=126.0
Q ss_pred eecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCC--CchHHHHHHHHHHH-HHHHHHhhc--chHHHHHHHHHH
Q 009563 116 VTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRL--GRKGSLTVVCMMNA-VFGCLTAFS--PNYSTYVVLRML 190 (532)
Q Consensus 116 ~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~--Grr~~l~~~~~~~~-~~~~~~~~~--~~~~~l~~~r~l 190 (532)
.+.+|+ +..+.+++.+...++..++.++.|++.|| + |||+.+.++.++.. ++.++..+. .+.+.+.+..++
T Consensus 280 ~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (451)
T 1pw4_A 280 KEVKHF---ALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIV 355 (451)
T ss_dssp TTBSCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHH
T ss_pred HHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHH
Confidence 344888 99999999999999999999999999999 9 99999988887777 677777666 378888888999
Q ss_pred HHhhccccchhhhheeecccCCCchhHHHHHHHHHHHH-HHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhc
Q 009563 191 TGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFST-GIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILP 263 (532)
Q Consensus 191 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~ 263 (532)
.|++.+...+....++.|.+|+++|+++.++......+ |..+++.+.+.+. ||+..|++.++..++..++.++
T Consensus 356 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 356 IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888899999999999999999999999999 9999999998876 8999999988887776644433
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.34 E-value=7.4e-12 Score=122.75 Aligned_cols=145 Identities=14% Similarity=0.080 Sum_probs=124.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhh
Q 009563 125 EKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFV 204 (532)
Q Consensus 125 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 204 (532)
+....++..++..++..++.++.|++.|| +|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888889999999999999999 99999999999998888888888888888888888888887777777788
Q ss_pred eeecccCCCchhHHHHH-HHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCch
Q 009563 205 LATEPVGPSKRGAAGMS-TFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESPR 270 (532)
Q Consensus 205 ~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp~ 270 (532)
++.|.+|++.|++..++ .+....+|..++|.+++.+. +++..|++.+++.++..++.++..||.++
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 99999999999999888 47888899999999998776 78888988888888777666666776543
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.24 E-value=1.8e-10 Score=113.72 Aligned_cols=137 Identities=9% Similarity=0.010 Sum_probs=116.5
Q ss_pred eeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhh
Q 009563 115 TVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFS 194 (532)
Q Consensus 115 i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 194 (532)
+.+.+|. +..+.+++.+.+.++..++.++.|++.|| +|||+.+.++.++..++.++..+.++.+.++.. ++.|++
T Consensus 286 ~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~ 360 (438)
T 3o7q_A 286 VEEIPGM---TAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAF 360 (438)
T ss_dssp HHHSTTC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHH
T ss_pred hhccCCc---chhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHH
Confidence 3455688 99999999999999999999999999999 999999999999999999999988887765544 889999
Q ss_pred ccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---c-hHHHHHHHHHHHHHHH
Q 009563 195 TGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---T-WRALYIASSIPSILFL 258 (532)
Q Consensus 195 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~-wr~~f~~~~~~~~~~~ 258 (532)
.+...+...++..|.+|++ |+.+.++.. ...+|..++|.+.+.+. | ++..|++.++..++..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 361 MSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 9999999999989998866 888888776 55689999999988876 6 8888887766555544
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.10 E-value=1.1e-09 Score=109.92 Aligned_cols=131 Identities=18% Similarity=0.142 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-hCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhh
Q 009563 374 LYLNVLVNAVAEMPAFTITAVLLDK-LGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFI 452 (532)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (532)
.........++..++.++.|+++|| +|||+++..+.++..++.++..+..+.. ..++..++.+++.+...+...+
T Consensus 56 ~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~g~~~~~~~~~~~~ 131 (491)
T 4aps_A 56 AASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGAS----ALFGSIILIIIGTGFLKPNVST 131 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTT----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHhccchHHH
Confidence 3444556667788999999999999 8999999999999998888877655433 4667778889999999999999
Q ss_pred hccccccchh--hhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHHh
Q 009563 453 YTTELFPTVV--RNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFAF 508 (532)
Q Consensus 453 ~~~~~~p~~~--r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 508 (532)
++.|.+|++. |+.+.++.+....+|..++|.+. ..++...|++.++..+++.+..+
T Consensus 132 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 132 LVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988 77888888899999999998887 35677788887776666655543
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.09 E-value=1.4e-09 Score=104.96 Aligned_cols=150 Identities=13% Similarity=0.069 Sum_probs=115.1
Q ss_pred HhhhccccCcch---HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q 009563 362 GISLNVVNLQTN---LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVM 438 (532)
Q Consensus 362 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (532)
..+.+..+.+.+ .........++..++.++.|++.||+|||+.+..+..+..++.++..+.++.. ..++..++
T Consensus 22 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~l 97 (375)
T 2gfp_A 22 AIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLT----VLIAASAM 97 (375)
T ss_dssp HHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred hhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHH----HHHHHHHH
Confidence 334444444433 33444555677788999999999999999999999999998888887764322 56667788
Q ss_pred HHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHH-HhhccC
Q 009563 439 GIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLF-AFYLPE 512 (532)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 512 (532)
.+++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+. ..++...|++.++..++..+. .+.+||
T Consensus 98 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (375)
T 2gfp_A 98 QGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPE 177 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCC
T ss_pred HHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 88898889999999999999999999999999999999999999887 346677777777776665553 345566
Q ss_pred CCC
Q 009563 513 TLN 515 (532)
Q Consensus 513 ~~~ 515 (532)
+++
T Consensus 178 ~~~ 180 (375)
T 2gfp_A 178 TRP 180 (375)
T ss_dssp CST
T ss_pred cCC
Confidence 543
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.09 E-value=6e-10 Score=111.77 Aligned_cols=153 Identities=14% Similarity=0.020 Sum_probs=113.3
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhc-----chHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFS-----PNYSTYVVL 187 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~ 187 (532)
|.+.++.+. +............+...++.++.+++.|| +|||+.++.+.....++.+..+.. ++...++..
T Consensus 301 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 376 (491)
T 4gc0_A 301 PEVFKTLGA---STDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSM 376 (491)
T ss_dssp HHHHHHSSC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hHHHHhcCC---CccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 455566666 66666677777888889999999999999 999999999988888777665532 222222222
Q ss_pred HHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---------chHHHHHHHHHHHHHHH
Q 009563 188 RMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---------TWRALYIASSIPSILFL 258 (532)
Q Consensus 188 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---------~wr~~f~~~~~~~~~~~ 258 (532)
-+..+.......+....+.+|.+|.+.|+++.++......+|..+++.+...+. ++.+.|++.++++++..
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 456 (491)
T 4gc0_A 377 LFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAA 456 (491)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 222222223345667789999999999999999999998898888776654442 45567888888888888
Q ss_pred HHHhcccccCc
Q 009563 259 LIILPFLPESP 269 (532)
Q Consensus 259 ~~~~~~~~esp 269 (532)
++.++++|||.
T Consensus 457 i~~~~~~PETk 467 (491)
T 4gc0_A 457 LFMWKFVPETK 467 (491)
T ss_dssp HHHHHHCCCCT
T ss_pred HHHHheecCCC
Confidence 78889999984
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.96 E-value=2.9e-08 Score=100.36 Aligned_cols=133 Identities=9% Similarity=0.034 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhh-CCchhHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHhhhhhH
Q 009563 373 NLYLNVLVNAVAEMPAFTITAVLLDKL-GRKPMTIGTLWFSGFFCLLGSLVK-NNGIWKIVRMICGVMGIFGVAGTYNLL 450 (532)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~l~d~~-gr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (532)
..........++..++.++.|+++||+ |||+.+..+.++..++.++..+.. +.. ..++..++.+++.+...+..
T Consensus 55 ~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 55 VAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQ----GFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp THHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHH----HHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHH----HHHHHHHHHHHhccccchhH
Confidence 345555666777888999999999999 999999999998888888777665 222 45666778888888999999
Q ss_pred hhhccccccchhhhhHHHH---HHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHHhh
Q 009563 451 FIYTTELFPTVVRNAALGC---ATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFAFY 509 (532)
Q Consensus 451 ~~~~~~~~p~~~r~~~~g~---~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 509 (532)
.+++.|.+|++.|+++.+. .+....+|..++|.+. ..++...|++.+++.+++.+..++
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999776666 7888889999998776 245677777777776665555443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=33.92 E-value=9.1 Score=18.60 Aligned_cols=14 Identities=43% Similarity=0.809 Sum_probs=10.3
Q ss_pred HHHhhccCCCCchHH
Q 009563 146 VFGHLSDSRLGRKGS 160 (532)
Q Consensus 146 ~~g~l~dr~~Grr~~ 160 (532)
++|.+..+ ||||.+
T Consensus 2 lfgklikk-fgrkai 15 (26)
T 2g9p_A 2 LFGKLIKK-FGRKAI 15 (26)
T ss_dssp HHHHHHHH-HTSHHH
T ss_pred cHHHHHHH-HhHHHH
Confidence 35777888 899864
No 16
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=31.39 E-value=63 Score=17.53 Aligned_cols=11 Identities=36% Similarity=0.685 Sum_probs=8.0
Q ss_pred HHhcccccCch
Q 009563 260 IILPFLPESPR 270 (532)
Q Consensus 260 ~~~~~~~esp~ 270 (532)
+...+++|+|+
T Consensus 18 FFAI~FRePPr 28 (32)
T 3arc_T 18 FFAIFFREPPR 28 (32)
T ss_dssp HHHHHTSCCCC
T ss_pred HHhhhhcCCCC
Confidence 55667889886
No 17
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=24.59 E-value=3.1e+02 Score=25.68 Aligned_cols=11 Identities=9% Similarity=-0.052 Sum_probs=5.2
Q ss_pred CCchHHHHHHH
Q 009563 155 LGRKGSLTVVC 165 (532)
Q Consensus 155 ~Grr~~l~~~~ 165 (532)
+||+.-...+.
T Consensus 81 ~G~~~g~~~g~ 91 (445)
T 3l1l_A 81 FGPFLGYQTNV 91 (445)
T ss_dssp SCHHHHHHHHH
T ss_pred cCChHHHHHHH
Confidence 55554444443
Done!