BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009565
(532 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O43719|HTSF1_HUMAN HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1
Length = 755
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 110/332 (33%), Positives = 168/332 (50%), Gaps = 32/332 (9%)
Query: 184 TRYKWDRGLRAWVPQEDTSSQNDGYGIEEMTFLKEEEVFPTVNVTDDLANDEVGKEKLNS 243
T Y+WD +AW P+ +T E+ T +ND N
Sbjct: 48 TPYEWDLDKKAWFPK--------------IT----EDFIATYQANYGFSNDGASSSTANV 89
Query: 244 TEEKVNSADNVVEEKHNGKRKQPDKQVEKKEANKPPDSWFELK--VNTHVYVTGLPDDVT 301
+ +A+ +EK +P +K E K WF ++ NT+VYV+GLP D+T
Sbjct: 90 EDVHARTAEEPPQEKA----PEPTDARKKGEKRKAESGWFHVEEDRNTNVYVSGLPPDIT 145
Query: 302 VEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGT 361
V+E +++ SK GII DP+T++ ++K+Y D + G KGD L YLK SV LA +LLD
Sbjct: 146 VDEFIQLMSKFGIIMRDPQTEEFKVKLYKDNQ-GNLKGDGLCCYLKRESVELALKLLDED 204
Query: 362 PFRPDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLK-KVEEKMLGWGGRDDA---KLT 417
R + V AKF+ KGE +K+ K K K +++K L W A ++
Sbjct: 205 EIR---GYKLHVEVAKFQLKGEYDASKKKKKCKDYKKKLSMQQKQLDWRPERRAGPSRMR 261
Query: 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKD 477
VI++ MF P + D + +E+ D++ EC K G + + + + HP GV V F+D
Sbjct: 262 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRD 321
Query: 478 RKDAQKCIELMNGRWFGGRQIHASEDDGLVNH 509
++A CI+ ++GRWFGGRQI A DG ++
Sbjct: 322 PEEADYCIQTLDGRWFGGRQITAQAWDGTTDY 353
>sp|Q5RB63|HTSF1_PONAB HIV Tat-specific factor 1 homolog OS=Pongo abelii GN=HTATSF1 PE=2
SV=1
Length = 754
Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 110/332 (33%), Positives = 168/332 (50%), Gaps = 32/332 (9%)
Query: 184 TRYKWDRGLRAWVPQEDTSSQNDGYGIEEMTFLKEEEVFPTVNVTDDLANDEVGKEKLNS 243
T Y+WD +AW P+ +T E+ T +ND N
Sbjct: 48 TPYEWDLDKKAWFPK--------------IT----EDFIATYQANYGFSNDGASSSTANV 89
Query: 244 TEEKVNSADNVVEEKHNGKRKQPDKQVEKKEANKPPDSWFELK--VNTHVYVTGLPDDVT 301
+ +A+ +EK +P +K E K WF ++ NT+VYV+GLP D+T
Sbjct: 90 EDVHARTAEEPPQEKA----PEPTDPRKKGEKRKAESGWFHVEEDRNTNVYVSGLPPDIT 145
Query: 302 VEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGT 361
V+E +++ SK GII DP+T++ ++K+Y D + G KGD L YLK SV LA +LLD
Sbjct: 146 VDEFIQLMSKFGIIMRDPQTEEFKVKLYKDNQ-GNLKGDGLCCYLKRESVELALKLLDED 204
Query: 362 PFRPDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLK-KVEEKMLGWGGRDDA---KLT 417
R + V AKF+ KGE +K+ K K K +++K L W A ++
Sbjct: 205 EIR---GYKLHVEVAKFQLKGEYDASKKKKKCKDYKKKLSMQQKQLDWRPERRAGPSRMR 261
Query: 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKD 477
VI++ MF P + D + +E+ D++ EC K G + + + + HP GV V F+D
Sbjct: 262 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRD 321
Query: 478 RKDAQKCIELMNGRWFGGRQIHASEDDGLVNH 509
++A CI+ ++GRWFGGRQI A DG ++
Sbjct: 322 PEEADYCIQTLDGRWFGGRQITAQAWDGTTDY 353
>sp|Q8BGC0|HTSF1_MOUSE HIV Tat-specific factor 1 homolog OS=Mus musculus GN=Htatsf1 PE=1
SV=1
Length = 757
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 117/337 (34%), Positives = 174/337 (51%), Gaps = 38/337 (11%)
Query: 182 DGTRYKWDRGLRAWVPQ--ED-TSSQNDGYGIEEMTFLKEEEVFPTVNVTDDLANDEVGK 238
D T Y+WD +AW P+ ED ++ YG F + T NV D AN + +
Sbjct: 47 DDTPYEWDLDKKAWFPKITEDFIATYQANYG-----FSSDGASSSTANVQD--ANTKAVE 99
Query: 239 EKLNSTEEKVNSADNVVEEKHNGKRKQPDKQVEKKEANKPPDSWFELK--VNTHVYVTGL 296
E V E + KRK ++ E WF ++ NT+VYV+GL
Sbjct: 100 EPPQKE----------VPETPDSKRKGEKRKAES--------GWFHVEEDRNTNVYVSGL 141
Query: 297 PDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQ 356
P D+TV+E +++ SK GII DP+T++ ++K+Y D + G KGD L YLK+ SV LA +
Sbjct: 142 PPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKD-DQGNLKGDGLCCYLKKESVELALK 200
Query: 357 LLDGTPFRPDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLK-KVEEKMLGWGGRDDA- 414
LLD R + V AKF+ KGE +K+ K K K +++K L W A
Sbjct: 201 LLDEDEIR---GYKLHVEVAKFQLKGEYDASKKKKKCKDYKKKLSLQQKQLDWRPERRAG 257
Query: 415 --KLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVL 472
+L VIL+ MF P + D + +E+ D++ EC K G + + + + HP GV
Sbjct: 258 PNRLRHERVVILKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVAS 317
Query: 473 VRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLVNH 509
V F++ ++A CI+ ++GRWFGGRQI A DG ++
Sbjct: 318 VSFREPEEADHCIQTLDGRWFGGRQITAQAWDGTTDY 354
>sp|O43120|UAP2_SCHPO Splicing factor U2AF-associated protein 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=uap2 PE=1 SV=1
Length = 367
Score = 149 bits (377), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 97/258 (37%), Positives = 138/258 (53%), Gaps = 15/258 (5%)
Query: 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYL 346
+N VY+ GLP DVTV+E+ EVF KCG+I ++ + PRIKIY E G KGDAL+ +
Sbjct: 108 INKAVYIQGLPLDVTVDEIEEVFKKCGVIAKNIDNGTPRIKIY-RTEDGTPKGDALIVFF 166
Query: 347 KEPSVALATQLLDGTPFRPDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEK-- 404
+ SV LA QL D T FR M V +A + K E+ + K V KKK ++ ++
Sbjct: 167 RSESVELAEQLFDDTEFRYGSGQKMRVQKANIDYKKEKTVNKDVGGALKKKALRLRQQQM 226
Query: 405 --MLGWGGRDDA-----KLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPV 457
+ W D+ K V+L+ +FT E+ L +L+ D+ EE K G V
Sbjct: 227 QQISSWDDVDEEVDDKRKKRFNKIVVLKHIFTLEELDKTPELLIDLKDDITEEAEKCGRV 286
Query: 458 DSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLVNHA-----AI 512
+V + + P GVV VRF + ++A+ C+ LM GR+F GR + AS DG V +
Sbjct: 287 TNVVLYDKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGRVVEASIYDGKVRFQKSGKHTL 346
Query: 513 RDLDAEASRLEQFGAELE 530
D + E RLE+F LE
Sbjct: 347 DDEEDEEKRLEKFADWLE 364
>sp|P53830|CUS2_YEAST Cold sensitive U2 snRNA suppressor 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CUS2 PE=1 SV=1
Length = 285
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 129/225 (57%), Gaps = 20/225 (8%)
Query: 288 NTHVYVTGLPDDVTVEE-MVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYL 346
NT +Y++GLP D T +E + E F K G+I+ + + + P K+YV+ + G KGDAL+TY
Sbjct: 44 NTSIYISGLPTDKTTKEGLTEQFCKYGMIRTNRDGE-PLCKLYVN-DKGAFKGDALITYS 101
Query: 347 KEPSVALATQLLDGTPFRPDGKIPMSVTQAKFEQK-GERFIAKQVDSKK-------KKKL 398
KE SV LA ++++ + F GK + V +A+F+ K G+ K+ D K+ K+L
Sbjct: 102 KEESVTLAIEMMNESIFL--GK-QIRVERAQFQNKEGDNMHGKENDLKEFNGPEPPIKRL 158
Query: 399 KKVEEKMLG--WGGRDDAKLT-IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIG 455
KK + + G DD L TVI +F + ++++ ++++ D+ E C +IG
Sbjct: 159 KKAKSEGEGEVIDYNDDESLAKADRTVIFANVFNIYKSYTNDDI-NDIQEDLLEGCEEIG 217
Query: 456 PVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHA 500
VDS+ V N + V+ FK+ K A +C ++M GR+F G+++ A
Sbjct: 218 QVDSISVSPNKGEATVV--FKNNKVALQCCKIMTGRYFDGQKLLA 260
>sp|Q61545|EWS_MOUSE RNA-binding protein EWS OS=Mus musculus GN=Ewsr1 PE=1 SV=2
Length = 655
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 51/77 (66%)
Query: 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLK 347
N+ +YV GL D+VT++++ + F +CG++K + T +P I IY+DKETG KGDA V+Y
Sbjct: 359 NSAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYED 418
Query: 348 EPSVALATQLLDGTPFR 364
P+ A + DG F+
Sbjct: 419 PPTAKAAVEWFDGKDFQ 435
>sp|Q01844|EWS_HUMAN RNA-binding protein EWS OS=Homo sapiens GN=EWSR1 PE=1 SV=1
Length = 656
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 50/77 (64%)
Query: 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLK 347
N+ +YV GL D VT++++ + F +CG++K + T +P I IY+DKETG KGDA V+Y
Sbjct: 360 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYED 419
Query: 348 EPSVALATQLLDGTPFR 364
P+ A + DG F+
Sbjct: 420 PPTAKAAVEWFDGKDFQ 436
>sp|P56959|FUS_MOUSE RNA-binding protein FUS OS=Mus musculus GN=Fus PE=2 SV=1
Length = 518
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLK 347
N ++V GL ++VT+E + + F + GIIK + +T +P I +Y D+ETG KG+A V++
Sbjct: 277 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDD 336
Query: 348 EPSVALATQLLDGTPFRPDG-KIPMSVTQAKF 378
PS A DG F + K+ + +A F
Sbjct: 337 PPSAKAAIDWFDGKEFSGNPIKVSFATRRADF 368
>sp|Q28009|FUS_BOVIN RNA-binding protein FUS OS=Bos taurus GN=FUS PE=2 SV=2
Length = 513
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLK 347
N ++V GL ++VT+E + + F + GIIK + +T +P I +Y D+ETG KG+A V++
Sbjct: 271 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDD 330
Query: 348 EPSVALATQLLDGTPF 363
PS A DG F
Sbjct: 331 PPSAKAAIDWFDGKEF 346
>sp|P35637|FUS_HUMAN RNA-binding protein FUS OS=Homo sapiens GN=FUS PE=1 SV=1
Length = 526
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLK 347
N ++V GL ++VT+E + + F + GIIK + +T +P I +Y D+ETG KG+A V++
Sbjct: 284 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDD 343
Query: 348 EPSVALATQLLDGTPFRPDG-KIPMSVTQAKF 378
PS A DG F + K+ + +A F
Sbjct: 344 PPSAKAAIDWFDGKEFSGNPIKVSFATRRADF 375
>sp|Q92804|RBP56_HUMAN TATA-binding protein-associated factor 2N OS=Homo sapiens GN=TAF15
PE=1 SV=1
Length = 592
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLK 347
N ++V GL + V+ +++ E F + GIIK + +T KP I +Y DK+TG KG+A V++
Sbjct: 233 NNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDD 292
Query: 348 EPSVALATQLLDGTPF 363
PS A DG F
Sbjct: 293 PPSAKAAIDWFDGKEF 308
>sp|Q27294|CAZ_DROME RNA-binding protein cabeza OS=Drosophila melanogaster GN=caz PE=2
SV=2
Length = 399
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 291 VYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPS 350
++V+G+ T +++ F GIIK+D T KP+I +Y +KETG KG+A VTY +
Sbjct: 122 IFVSGMDPSTTEQDIETHFGAIGIIKKDKRTMKPKIWLYKNKETGASKGEATVTYDDTNA 181
Query: 351 VALATQLLDGTPFRPDGKIPMSVTQ 375
A + DG F + I +S+ Q
Sbjct: 182 AQSAIEWFDGRDFNGNA-IKVSLAQ 205
>sp|O13845|RSD1_SCHPO RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rsd1 PE=1 SV=2
Length = 603
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 422 VILRFMFTPAEMRADENLRSELEADVQEEC-VKIGPVDSVKVCENHPQGVVLVRFKDRKD 480
+L MF PAE N ELE DV+EEC K G V + V N G + V+F++
Sbjct: 508 ALLENMFNPAE-ETSPNWVQELEQDVKEECDEKYGKVVHIAVVPNE-LGQIFVKFENADF 565
Query: 481 AQKCIELMNGRWFGGRQIHAS 501
A+K I ++ RWFGGR I AS
Sbjct: 566 AEKAITGLHQRWFGGRTIKAS 586
>sp|P90727|U2AF2_CAEBR Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis briggsae
GN=uaf-1 PE=3 SV=2
Length = 488
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 99/249 (39%), Gaps = 38/249 (15%)
Query: 265 QPDKQVEKKEANKPPDSWFELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKP 324
QP + A P S N +++ GLP+ +T +++ E+ G +K
Sbjct: 259 QPSQNTFDMNARMPVSSIVVDSAN-KIFIGGLPNYLTEDQVKELLCSFGPLKA------- 310
Query: 325 RIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKIPMSVTQAKFEQKGER 384
+ VD + G KG A YL A L+G Q G++
Sbjct: 311 -FSLNVDSQ-GNSKGYAFAEYLDPTLTDQAIAGLNGM------------------QLGDK 350
Query: 385 FIAKQVDSKKKKKLK-KVEEKMLGWGGRDDAKLTIPATVILRFM--FTPAEMRADENLRS 441
+ Q+ + + + G D ++ AT IL M T E+R+DE+
Sbjct: 351 QLVVQLACANQTRHNTHLPNSASAIAGIDLSQGAGRATEILCLMNMVTEDELRSDEDYEE 410
Query: 442 ELEADVQEECVKIGPVDSVKV---CENHP---QGVVLVRFKDRKDAQKCIELMNGRWFGG 495
LE DV+EEC K G V S+++ ++HP G V V F D Q+ + GR F
Sbjct: 411 ILE-DVREECSKYGIVRSLEIPRPYDDHPVPGVGKVFVEFATTSDCQRAQAALTGRKFAN 469
Query: 496 RQIHASEDD 504
R + S D
Sbjct: 470 RTVVTSYYD 478
>sp|Q6IQE0|PU60B_DANRE Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b
PE=2 SV=2
Length = 516
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 16/101 (15%)
Query: 409 GGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQ 468
GR A + ++LR M P E++ +LE +V EEC K G V+ V + + Q
Sbjct: 408 AGRQAAIQSKSTVMVLRNMVGP------EDIDDDLEGEVMEECGKYGAVNRVIIYQER-Q 460
Query: 469 G---------VVLVRFKDRKDAQKCIELMNGRWFGGRQIHA 500
G + V F D + K I+ +N RWF GR++ A
Sbjct: 461 GEEDDAEIIVKIFVEFSDAGEMNKAIQALNNRWFAGRKVVA 501
>sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia
GN=U2AF65B PE=2 SV=1
Length = 573
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 100/255 (39%), Gaps = 50/255 (19%)
Query: 265 QPDKQVEKKEANKPPDSWFELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKP 324
QP+ + P S L+ ++V GLP T ++ E+ G ++
Sbjct: 335 QPNPNLNLAAVGLSPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRG------- 387
Query: 325 RIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKIPMSV-------TQAK 377
+ D+ETG KG A Y +A L+G G ++V TQ K
Sbjct: 388 -FDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKM---GDKTLTVRRANQGTTQPK 443
Query: 378 FEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFM-----FTPAE 432
EQ+ A+Q + ++ L+ PAT+ + + + E
Sbjct: 444 PEQESVLLHAQQQIALQRLMLQ-------------------PATLATKVLSLTEVISADE 484
Query: 433 MRADENLRSELEADVQEECVKIGPVDSVKVCENHPQG-------VVLVRFKDRKDAQKCI 485
+ DE+ + LE D++ EC K G + +V + P G V + + D + K
Sbjct: 485 LNDDEDYQDILE-DMRTECGKFGSLVNVVIPRPSPNGEPTPGVGKVFLEYADVDSSSKAR 543
Query: 486 ELMNGRWFGGRQIHA 500
+ +NGR FGG Q+ A
Sbjct: 544 QSLNGRKFGGNQVVA 558
>sp|P90978|U2AF2_CAEEL Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis elegans
GN=uaf-1 PE=2 SV=2
Length = 496
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 95/235 (40%), Gaps = 37/235 (15%)
Query: 279 PDSWFELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKK 338
P S + +++ GLP+ +T +++ E+ G +K + VD + G K
Sbjct: 281 PVSTIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKA--------FSLNVDSQ-GNSK 331
Query: 339 GDALVTYLKEPSVALATQLLDGTPFRPDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKL 398
G A YL A L+G Q G++ + Q+ +++
Sbjct: 332 GYAFAEYLDPTLTDQAIAGLNGM------------------QLGDKQLVVQLACANQQRH 373
Query: 399 K-KVEEKMLGWGGRDDAKLTIPATVILRFM--FTPAEMRADENLRSELEADVQEECVKIG 455
+ G D ++ AT IL M T E++AD+ LE DV++EC K G
Sbjct: 374 NTNLPNSASAIAGIDLSQGAGRATEILCLMNMVTEDELKADDEYEEILE-DVRDECSKYG 432
Query: 456 PVDSVKV---CENHPQ---GVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDD 504
V S+++ E+HP G V V F D Q+ + GR F R + S D
Sbjct: 433 IVRSLEIPRPYEDHPVPGVGKVFVEFASTSDCQRAQAALTGRKFANRTVVTSYYD 487
>sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60
PE=2 SV=2
Length = 564
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 16/89 (17%)
Query: 421 TVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQG---------VV 471
++LR M P ++ D LE +V EEC K G V+ V + + QG +
Sbjct: 468 VMVLRNMVDPKDIDDD------LEGEVTEECGKFGAVNRVIIYQEK-QGEEEDAEIIVKI 520
Query: 472 LVRFKDRKDAQKCIELMNGRWFGGRQIHA 500
V F + K I+ +NGRWFGGR++ A
Sbjct: 521 FVEFSMASETHKAIQALNGRWFGGRKVVA 549
>sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2
SV=2
Length = 564
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 16/89 (17%)
Query: 421 TVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQG---------VV 471
++LR M P ++ D LE +V EEC K G V+ V + + QG +
Sbjct: 468 VMVLRNMVDPKDIDDD------LEGEVTEECGKFGAVNRVIIYQEK-QGEEEDAEIIVKI 520
Query: 472 LVRFKDRKDAQKCIELMNGRWFGGRQIHA 500
V F + K I+ +NGRWFGGR++ A
Sbjct: 521 FVEFSMASETHKAIQALNGRWFGGRKVVA 549
>sp|Q24562|U2AF2_DROME Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster
GN=U2af50 PE=2 SV=1
Length = 416
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 90/222 (40%), Gaps = 31/222 (13%)
Query: 291 VYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPS 350
+++ GLP+ + +++ E+ G ++ + D TG+ KG A Y+
Sbjct: 209 IFIGGLPNYLNDDQVKELLLSFGKLRA--------FNLVKDAATGLSKGYAFCEYV---D 257
Query: 351 VALATQLLDGTPFRPDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGG 410
+++ Q + G G + V +A K + A S ML G
Sbjct: 258 LSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANTTQSV-----------MLQVPG 306
Query: 411 RDDAKLTIPATVILRF--MFTPAEMRADENLRSELEADVQEECVKIGPVDSVKV------ 462
+ + P T +L M TP E+R +E LE D++EEC K G V SV++
Sbjct: 307 LSNVVTSGPPTEVLCLLNMVTPDELRDEEEYEDILE-DIKEECTKYGVVRSVEIPRPIEG 365
Query: 463 CENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDD 504
E G V V F D QK + + GR F R + S D
Sbjct: 366 VEVPGCGKVFVEFNSVLDCQKAQQALTGRKFSDRVVVTSYFD 407
>sp|Q9ZR39|U2A2A_NICPL Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia
GN=U2AF65A PE=2 SV=1
Length = 555
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 99/251 (39%), Gaps = 40/251 (15%)
Query: 264 KQPDKQVEKKEANKPPDSWFELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKK 323
QP + P S L+ ++V GLP T ++ E+ G ++
Sbjct: 316 SQPSPNLNLAAVGSTPGSSGGLEGPDRIFVGGLPYYFTESQIRELLESFGQLRG------ 369
Query: 324 PRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKIPMSV-------TQA 376
+ D+ETG KG A Y +A L+G G ++V TQ
Sbjct: 370 --FDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKM---GDKTLTVRRANQGTTQP 424
Query: 377 KFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRAD 436
EQ+ A+Q + L++ ML G L + V + E+ D
Sbjct: 425 NPEQESVLLHAQQ-----QIALQRF---MLQPGALATKVLCLTEVVTVD------ELNDD 470
Query: 437 ENLRSELEADVQEECVKIGPVDSVKVCENHPQGV-------VLVRFKDRKDAQKCIELMN 489
++ + LE D++ EC K G + +V + +P GV V + + D + K + +N
Sbjct: 471 DDYQDILE-DMRTECEKFGALVNVVIPRPNPNGVPTPGLGKVFLEYADVDGSSKARQGLN 529
Query: 490 GRWFGGRQIHA 500
GR FGG Q+ A
Sbjct: 530 GRKFGGNQVVA 540
>sp|O75165|DJC13_HUMAN DnaJ homolog subfamily C member 13 OS=Homo sapiens GN=DNAJC13 PE=1
SV=5
Length = 2243
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 12 LSGATNYETAGEEGWYILDENQQHVGPYAISELCEHFLNGYLLETTLVWSQGRSEWQPLS 71
+ A + + E+ WY + +++ GPY E+ E + G L T W+QG W+PL
Sbjct: 962 IEAAPDMKRESEKEWYFGNADKERSGPYGFHEMQELWTKGMLNAKTRCWAQGMDGWRPLQ 1021
Query: 72 SIPQF 76
SIPQ
Sbjct: 1022 SIPQL 1026
>sp|Q94535|U2AF1_DROME Splicing factor U2af 38 kDa subunit OS=Drosophila melanogaster
GN=U2af38 PE=1 SV=2
Length = 264
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 446 DVQEECV-KIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHA 500
DV EC K G ++ + VC+N H G V ++F++ DA+K +N RWFGGR +++
Sbjct: 86 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNNRWFGGRPVYS 144
>sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2
SV=1
Length = 558
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 16/89 (17%)
Query: 421 TVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQG---------VV 471
++LR M P ++ D LE +V EEC K G V+ V + + QG +
Sbjct: 462 VMVLRNMVDPKDIDDD------LEGEVTEECGKFGAVNRVIIYQEK-QGEEEDAEIIVKI 514
Query: 472 LVRFKDRKDAQKCIELMNGRWFGGRQIHA 500
V F + K I+ +NGRWF GR++ A
Sbjct: 515 FVEFSIASETHKAIQALNGRWFAGRKVVA 543
>sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1
SV=1
Length = 559
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 16/89 (17%)
Query: 421 TVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQG---------VV 471
++LR M P ++ D LE +V EEC K G V+ V + + QG +
Sbjct: 463 VMVLRNMVDPKDIDDD------LEGEVTEECGKFGAVNRVIIYQEK-QGEEEDAEIIVKI 515
Query: 472 LVRFKDRKDAQKCIELMNGRWFGGRQIHA 500
V F + K I+ +NGRWF GR++ A
Sbjct: 516 FVEFSIASETHKAIQALNGRWFAGRKVVA 544
>sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus
GN=Syncrip PE=2 SV=1
Length = 533
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 15/131 (11%)
Query: 271 EKKEANKPPDSWF---ELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIK 327
++K PPDS + + V T ++V +P D+ +E+V +F K G I + ++
Sbjct: 51 QRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWD--------LR 102
Query: 328 IYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKIPMSVTQAKFEQKGERFIA 387
+ +D TG+ +G A VT+ + + A +L + R I + ++ A F+
Sbjct: 103 LMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVA----NNRLFVG 158
Query: 388 KQVDSKKKKKL 398
SK K+++
Sbjct: 159 SIPKSKTKEQI 169
>sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens
GN=SYNCRIP PE=1 SV=2
Length = 623
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 271 EKKEANKPPDSWF---ELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIK 327
++K PPDS + + V T ++V +P D+ +E+V +F K G I + ++
Sbjct: 141 QRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWD--------LR 192
Query: 328 IYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKIPMSVTQA 376
+ +D TG+ +G A VT+ + + A +L + R I + ++ A
Sbjct: 193 LMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVA 241
>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus
GN=Syncrip PE=1 SV=2
Length = 623
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 271 EKKEANKPPDSWF---ELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIK 327
++K PPDS + + V T ++V +P D+ +E+V +F K G I + ++
Sbjct: 141 QRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWD--------LR 192
Query: 328 IYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKIPMSVTQA 376
+ +D TG+ +G A VT+ + + A +L + R I + ++ A
Sbjct: 193 LMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVA 241
>sp|O43390|HNRPR_HUMAN Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR
PE=1 SV=1
Length = 633
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 271 EKKEANKPPDSWF---ELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIK 327
++K PPDS + + + T V+V +P D+ +E+V +F K G I + ++
Sbjct: 144 QRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWD--------LR 195
Query: 328 IYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKIPMSVTQA 376
+ +D +G +G A +T+ + + A +L D RP + + ++ A
Sbjct: 196 LMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVA 244
>sp|Q9SD61|C3H42_ARATH Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis
thaliana GN=At3g47120 PE=2 SV=1
Length = 352
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 281 SWF-ELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKG 339
SW + K + +VYV G+P D+T +++ VFS+ G I + + + DK TG KG
Sbjct: 27 SWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVD--------VNLIRDKGTGKSKG 78
Query: 340 DALVTYLKEPSVALATQLLDGT 361
A + Y + S LA L+G
Sbjct: 79 FAFLAYEDQRSTILAVDNLNGA 100
>sp|Q6YVX9|C3H16_ORYSJ Zinc finger CCCH domain-containing protein 16 OS=Oryza sativa
subsp. japonica GN=Os02g0557500 PE=2 SV=2
Length = 678
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 15/94 (15%)
Query: 420 ATVILRFMFT-PA-EMRADENLRS----------ELEADVQEECVKIGPVDSVKVCEN-- 465
T+++R M++ P + DE L E DV E +K G + + KVC N
Sbjct: 195 CTLLMRNMYSGPGLALEQDEGLECTDEEIEQSYEEFYEDVHTEFLKFGELVNFKVCRNGS 254
Query: 466 -HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQI 498
H +G V V +K A MNGR+F G+QI
Sbjct: 255 LHLRGNVYVHYKSLDSALIAYSSMNGRYFAGKQI 288
>sp|Q7TP17|U2AF4_RAT Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus GN=U2af1l4
PE=2 SV=1
Length = 220
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 437 ENLRSELEADVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWF 493
+N E+ ++QE K G ++ + VC+N H G V V+F+ +DA++ + +N RWF
Sbjct: 79 DNFFEEVFTELQE---KYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWF 135
Query: 494 GGRQIHA 500
G+ +HA
Sbjct: 136 NGQAVHA 142
>sp|Q8BGJ9|U2AF4_MOUSE Splicing factor U2AF 26 kDa subunit OS=Mus musculus GN=U2af1l4 PE=1
SV=1
Length = 220
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 437 ENLRSELEADVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWF 493
+N E+ ++QE K G ++ + VC+N H G V V+F+ +DA++ + +N RWF
Sbjct: 79 DNFFEEVFTELQE---KYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWF 135
Query: 494 GGRQIHA 500
G+ +HA
Sbjct: 136 NGQAVHA 142
>sp|Q3T127|U2AF4_BOVIN Splicing factor U2AF 26 kDa subunit OS=Bos taurus GN=U2AF1L4 PE=2
SV=1
Length = 220
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 437 ENLRSELEADVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWF 493
+N E+ ++QE K G ++ + VC+N H G V V+F+ +DA++ + +N RWF
Sbjct: 79 DNFFEEVFTELQE---KYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVVELNNRWF 135
Query: 494 GGRQIHA 500
G+ +HA
Sbjct: 136 NGQAVHA 142
>sp|Q9D883|U2AF1_MOUSE Splicing factor U2AF 35 kDa subunit OS=Mus musculus GN=U2af1 PE=1
SV=4
Length = 239
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 453 KIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHA 500
K G V+ + VC+N H G V V+F+ +DA+K + +N RWF G+ IHA
Sbjct: 92 KYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 142
>sp|Q01081|U2AF1_HUMAN Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1
SV=3
Length = 240
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 453 KIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHA 500
K G V+ + VC+N H G V V+F+ +DA+K + +N RWF G+ IHA
Sbjct: 92 KYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 142
>sp|A1A4K8|U2AF1_BOVIN Splicing factor U2AF 35 kDa subunit OS=Bos taurus GN=U2AF1 PE=2
SV=1
Length = 237
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 453 KIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHA 500
K G V+ + VC+N H G V V+F+ +DA+K + +N RWF G+ IHA
Sbjct: 92 KYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 142
>sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2
SV=1
Length = 530
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 16/89 (17%)
Query: 421 TVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQG---------VV 471
++LR M P ++ D LE +V EEC K G V+ V + + QG +
Sbjct: 434 VMVLRNMVDPKDIDDD------LEGEVTEECGKFGAVNRVIIYQEK-QGEEEDAEIIVKI 486
Query: 472 LVRFKDRKDAQKCIELMNGRWFGGRQIHA 500
V F + K I+ +NGRWF GR++ A
Sbjct: 487 FVEFSVASETHKAIQDLNGRWFAGRKVVA 515
>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis thaliana
GN=U2AF65B PE=2 SV=2
Length = 589
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 94/218 (43%), Gaps = 28/218 (12%)
Query: 291 VYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPS 350
++V GLP T ++ E+ G ++ + D+ETG KG A Y ++PS
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRG--------FNLVKDRETGNSKGYAFCVY-QDPS 427
Query: 351 VA-LATQLLDGTPFRPDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWG 409
V +A L+G Q + K E+ ++V ++++ ++ M G
Sbjct: 428 VTDIACAALNGIKMGDKTLTVRRAIQGAIQPKPEQ---EEVLLYAQQQIA-LQRLMFQPG 483
Query: 410 GRDDAKLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQ- 468
G T V L + T ++R DE +E+ D+++E K G + +V + +P
Sbjct: 484 G------TPTKIVCLTQVVTADDLRDDEEY-AEIMEDMRQEGGKFGNLVNVVIPRPNPDH 536
Query: 469 ------GVVLVRFKDRKDAQKCIELMNGRWFGGRQIHA 500
G V + + D + K MNGR FGG Q+ A
Sbjct: 537 DPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVA 574
>sp|Q62377|U2AFM_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2 OS=Mus musculus GN=Zrsr2 PE=2
SV=1
Length = 462
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 24/117 (20%)
Query: 408 WGGRDDAKLTIPA---TVILRFMFTPAEM----RADENLRSELE--------------AD 446
+G R K P T++++ MFT M R D + S LE D
Sbjct: 187 FGDRCSRKHNFPTSSPTLLIKGMFTTFGMEQCRRDDYDPDSSLEFSEEEIYQQFLDFYYD 246
Query: 447 VQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHA 500
V E +G V KV N H +G V V+++ +D Q + NGRW+ GRQ+
Sbjct: 247 VLPEFKSVGKVIQFKVSCNLEPHLRGNVYVQYQSEEDCQAAFSVFNGRWYAGRQLQC 303
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 441 SELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHA 500
+E++ DV EEC K G V + V +N QG V V+ A + ++GRWF G+ I A
Sbjct: 444 TEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITA 503
Query: 501 S 501
+
Sbjct: 504 A 504
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 441 SELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHA 500
+E++ DV EEC K G V + V +N QG V V+ A + ++GRWF G+ I A
Sbjct: 444 TEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITA 503
Query: 501 S 501
+
Sbjct: 504 A 504
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 441 SELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHA 500
+E++ DV EEC K G V + V +N QG V V+ A + ++GRWF G+ I A
Sbjct: 438 TEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITA 497
Query: 501 S 501
+
Sbjct: 498 A 498
>sp|Q64707|U2AFL_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 1 OS=Mus musculus GN=Zrsr1 PE=2
SV=1
Length = 428
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 24/117 (20%)
Query: 408 WGGRDDAKLTIPA---TVILRFMFTPAEMR--------ADENLR-SELEA---------D 446
+G R K P T++++ MFT M +D NL SE E D
Sbjct: 174 FGNRCSRKHDFPTSSPTLLVKSMFTTFGMEQCRRDDYDSDANLEYSEEETYQQFLDFYHD 233
Query: 447 VQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHA 500
V E +G V KV N H +G V V+++ ++ Q + L NGRW+ GRQ+
Sbjct: 234 VLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQC 290
>sp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A OS=Oryza sativa subsp.
japonica GN=U2AF35A PE=2 SV=1
Length = 290
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 446 DVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQI 498
D+ EE K G ++S+ VC+N H G V V+F++ A + ++ + GR++ GR I
Sbjct: 84 DIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREEDQAARALQALTGRYYSGRPI 139
>sp|Q15696|U2AFM_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2 OS=Homo sapiens GN=ZRSR2 PE=1
SV=2
Length = 482
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 24/117 (20%)
Query: 408 WGGRDDAKLTIPA---TVILRFMFTPAEM----RADENLRSELEA--------------D 446
+G R K P T++++ MFT M R D + + LE D
Sbjct: 183 FGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDASLEYSEEETYQQFLDFYED 242
Query: 447 VQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHA 500
V E +G V KV N H +G V V+++ ++ Q + L NGRW+ GRQ+
Sbjct: 243 VLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQC 299
>sp|Q15695|U2AFL_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 1 OS=Homo sapiens GN=ZRSR1 PE=2
SV=2
Length = 479
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 24/117 (20%)
Query: 408 WGGRDDAKLTIPA---TVILRFMFTPAEM----RADENLRSELEA--------------D 446
+G R K P T++++ MFT M R D + + LE D
Sbjct: 188 FGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDASLEYSEEETYQQFLDFYED 247
Query: 447 VQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHA 500
V E +G V KV N H +G V V+++ ++ Q + L NGRW+ GRQ+
Sbjct: 248 VLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQC 304
>sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa
subsp. japonica GN=Os03g0826400 PE=2 SV=1
Length = 312
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 281 SWF-ELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKG 339
SW + K + +V+V G+P D+T +++ VF++ G + + + + DK TG KG
Sbjct: 27 SWHAKFKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVD--------VNLVRDKGTGKSKG 78
Query: 340 DALVTYLKEPSVALATQLLDGT 361
A + Y + S LA L+G
Sbjct: 79 FAFLAYEDQRSTILAVDNLNGA 100
>sp|O23212|U2A2A_ARATH Splicing factor U2af large subunit A OS=Arabidopsis thaliana
GN=U2AF65A PE=2 SV=2
Length = 573
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 96/244 (39%), Gaps = 28/244 (11%)
Query: 265 QPDKQVEKKEANKPPDSWFELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKP 324
QP + P + L+ ++V GLP T ++ E+ G +K
Sbjct: 335 QPSPHLNLAAVGLTPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKG------- 387
Query: 325 RIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKIPMSVTQAKFEQKGER 384
+ D+ETG KG A Y +A L+G Q QK E+
Sbjct: 388 -FDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQ 446
Query: 385 FIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVI-LRFMFTPAEMRADENLRSEL 443
+ ++++ ++V ML G + TV+ L + T E+R DE +
Sbjct: 447 ENV-LLHAQQQIAFQRV---MLQPG-------AVATTVVCLTQVVTEDELRDDEEYGDIM 495
Query: 444 EADVQEECVKIGPVDSVKVCENHPQG-------VVLVRFKDRKDAQKCIELMNGRWFGGR 496
E D+++E K G + +V + P G V +++ D + + MNGR FGG
Sbjct: 496 E-DMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVFLKYADTDGSTRARFGMNGRKFGGN 554
Query: 497 QIHA 500
++ A
Sbjct: 555 EVVA 558
>sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza sativa subsp.
japonica GN=U2AF65A PE=2 SV=2
Length = 574
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 100/250 (40%), Gaps = 38/250 (15%)
Query: 265 QPDKQVEKKEANKPPDSWFELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKP 324
QP+ + P S L+ ++V GLP T ++ E+ G ++
Sbjct: 334 QPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRG------- 386
Query: 325 RIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKIPMSVTQAKFEQKGER 384
+ D+ETG KG A Y +A L+G G ++V +A +G
Sbjct: 387 -FDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKM---GDKTLTVRRAN---QG-- 437
Query: 385 FIAKQVDSKKKKKLKKVEEK------MLGWGGRDDAKLTIPATVI-LRFMFTPAEMRADE 437
A Q +++ L V+++ M GG +P V+ L + +P E+R DE
Sbjct: 438 --ASQPRPEQESMLLHVQQQAQMQKLMFQVGGG-----ALPTKVVCLTQVVSPDELRDDE 490
Query: 438 NLRSELEADVQEECVKIGPVDSVKVCENHPQGV-------VLVRFKDRKDAQKCIELMNG 490
++ D++EE + G + V + P G V + F D + + K M+G
Sbjct: 491 EYE-DIVQDMREEGCRYGNLVKVVIPRPDPSGAPVAGVGRVFLEFADVESSTKAKNGMHG 549
Query: 491 RWFGGRQIHA 500
R F Q+ A
Sbjct: 550 RKFANNQVVA 559
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.131 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 214,143,173
Number of Sequences: 539616
Number of extensions: 10025296
Number of successful extensions: 30007
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 468
Number of HSP's that attempted gapping in prelim test: 29137
Number of HSP's gapped (non-prelim): 1168
length of query: 532
length of database: 191,569,459
effective HSP length: 122
effective length of query: 410
effective length of database: 125,736,307
effective search space: 51551885870
effective search space used: 51551885870
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)