Query 009565
Match_columns 532
No_of_seqs 576 out of 2078
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 14:39:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009565.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009565hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1548 Transcription elongati 100.0 4.7E-60 1E-64 471.2 25.9 321 185-531 50-380 (382)
2 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.6E-27 5.6E-32 259.0 21.4 203 286-506 293-502 (509)
3 TIGR01645 half-pint poly-U bin 99.9 9.6E-27 2.1E-31 255.4 20.2 203 287-506 203-603 (612)
4 TIGR01622 SF-CC1 splicing fact 99.9 2.6E-26 5.5E-31 248.0 23.1 207 288-506 186-448 (457)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 3.6E-26 7.9E-31 238.3 22.1 198 288-507 3-350 (352)
6 TIGR01659 sex-lethal sex-letha 99.9 1.1E-25 2.3E-30 234.9 20.0 165 286-506 105-275 (346)
7 TIGR01645 half-pint poly-U bin 99.9 1.1E-24 2.4E-29 239.2 20.0 176 286-506 105-284 (612)
8 KOG0117 Heterogeneous nuclear 99.9 1.6E-24 3.5E-29 222.9 18.8 207 278-507 71-332 (506)
9 KOG0148 Apoptosis-promoting RN 99.9 1E-24 2.2E-29 212.3 14.3 175 286-502 60-234 (321)
10 KOG0147 Transcriptional coacti 99.9 2.8E-24 6.1E-29 226.5 14.4 204 289-506 279-528 (549)
11 TIGR01622 SF-CC1 splicing fact 99.9 4.8E-23 1E-27 222.6 21.3 174 286-504 87-264 (457)
12 TIGR01648 hnRNP-R-Q heterogene 99.9 8.9E-23 1.9E-27 223.8 21.3 205 277-507 45-308 (578)
13 KOG0145 RNA-binding protein EL 99.9 3.7E-23 7.9E-28 200.3 15.3 251 199-507 76-359 (360)
14 TIGR01628 PABP-1234 polyadenyl 99.9 1.6E-22 3.4E-27 224.4 20.7 184 286-506 176-364 (562)
15 KOG0144 RNA-binding protein CU 99.9 4.6E-23 1E-27 211.4 12.9 181 289-529 35-221 (510)
16 TIGR01628 PABP-1234 polyadenyl 99.9 2.3E-22 5E-27 223.1 19.6 162 289-504 1-165 (562)
17 KOG0127 Nucleolar protein fibr 99.9 3.8E-21 8.2E-26 201.9 15.9 193 288-511 5-201 (678)
18 KOG0127 Nucleolar protein fibr 99.9 4.9E-21 1.1E-25 201.1 15.7 196 288-506 117-378 (678)
19 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 3.9E-20 8.5E-25 201.8 19.5 167 289-505 3-173 (481)
20 KOG0131 Splicing factor 3b, su 99.8 9E-21 2E-25 175.7 11.8 166 286-506 7-177 (203)
21 TIGR01642 U2AF_lg U2 snRNP aux 99.8 3.3E-20 7.1E-25 203.0 17.6 196 286-505 173-374 (509)
22 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 7.6E-20 1.7E-24 199.5 18.4 191 287-505 274-479 (481)
23 KOG0145 RNA-binding protein EL 99.8 4.2E-20 9.2E-25 179.2 12.8 163 287-505 40-208 (360)
24 KOG0120 Splicing factor U2AF, 99.8 3.2E-20 7E-25 198.1 11.0 202 286-510 287-495 (500)
25 KOG0124 Polypyrimidine tract-b 99.8 2.4E-19 5.2E-24 180.6 11.9 170 287-501 112-285 (544)
26 KOG0124 Polypyrimidine tract-b 99.8 6.4E-19 1.4E-23 177.5 14.6 204 286-506 208-535 (544)
27 KOG0109 RNA-binding protein LA 99.8 1.3E-18 2.7E-23 171.5 10.9 150 289-508 3-152 (346)
28 KOG0123 Polyadenylate-binding 99.7 1.2E-16 2.6E-21 168.1 16.2 149 289-505 2-152 (369)
29 KOG0110 RNA-binding protein (R 99.7 8.1E-17 1.7E-21 174.4 13.3 171 289-506 516-693 (725)
30 KOG0146 RNA-binding protein ET 99.7 3.4E-16 7.3E-21 152.7 14.3 200 287-506 18-365 (371)
31 KOG0144 RNA-binding protein CU 99.7 3.2E-16 7E-21 161.4 13.2 84 287-379 123-206 (510)
32 KOG0123 Polyadenylate-binding 99.7 5.1E-16 1.1E-20 163.4 13.3 165 290-505 78-245 (369)
33 KOG0147 Transcriptional coacti 99.6 1.2E-15 2.7E-20 161.5 8.7 179 286-508 177-360 (549)
34 KOG0148 Apoptosis-promoting RN 99.6 6.6E-15 1.4E-19 144.2 10.9 134 286-507 4-143 (321)
35 PF14237 DUF4339: Domain of un 99.6 2.3E-15 5.1E-20 111.4 4.0 45 25-70 1-45 (45)
36 PLN03134 glycine-rich RNA-bind 99.6 1.9E-14 4.1E-19 132.8 10.8 80 287-377 33-112 (144)
37 KOG4206 Spliceosomal protein s 99.5 1.3E-13 2.8E-18 132.8 14.0 194 285-504 6-220 (221)
38 KOG4205 RNA-binding protein mu 99.5 6.5E-14 1.4E-18 143.4 9.4 168 287-506 5-176 (311)
39 TIGR01659 sex-lethal sex-letha 99.5 1.4E-13 3E-18 144.1 9.3 82 288-378 193-274 (346)
40 PF00076 RRM_1: RNA recognitio 99.4 4E-13 8.7E-18 106.5 9.0 65 291-364 1-65 (70)
41 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 3.3E-13 7.2E-18 140.8 10.8 81 287-378 268-348 (352)
42 KOG0131 Splicing factor 3b, su 99.4 9.9E-14 2.1E-18 129.2 4.3 140 193-379 38-177 (203)
43 KOG0105 Alternative splicing f 99.4 8.4E-12 1.8E-16 116.5 12.4 169 287-494 5-176 (241)
44 COG0724 RNA-binding proteins ( 99.3 1.6E-11 3.5E-16 119.8 13.9 79 288-377 115-193 (306)
45 KOG0110 RNA-binding protein (R 99.3 7.1E-12 1.5E-16 136.5 11.3 190 287-504 384-596 (725)
46 PF14259 RRM_6: RNA recognitio 99.3 8.8E-12 1.9E-16 99.8 8.9 65 291-364 1-65 (70)
47 KOG0126 Predicted RNA-binding 99.3 2.2E-13 4.8E-18 126.7 -0.6 86 280-376 26-112 (219)
48 KOG0106 Alternative splicing f 99.3 3.9E-12 8.4E-17 123.5 7.4 166 289-502 2-167 (216)
49 KOG0149 Predicted RNA-binding 99.3 4E-12 8.7E-17 122.9 7.3 80 287-378 11-90 (247)
50 PLN03120 nucleic acid binding 99.3 1E-11 2.2E-16 123.5 9.6 75 288-377 4-78 (260)
51 KOG4212 RNA-binding protein hn 99.3 8.7E-11 1.9E-15 121.7 16.0 196 286-505 42-293 (608)
52 KOG0122 Translation initiation 99.3 1.3E-11 2.9E-16 119.7 9.2 81 287-378 188-268 (270)
53 KOG0121 Nuclear cap-binding pr 99.3 9.8E-12 2.1E-16 109.9 6.9 80 286-376 34-113 (153)
54 PF13893 RRM_5: RNA recognitio 99.3 3.3E-11 7.1E-16 92.8 9.0 56 447-503 1-56 (56)
55 KOG0113 U1 small nuclear ribon 99.2 2.8E-11 6.1E-16 120.4 10.1 83 286-377 99-181 (335)
56 KOG1190 Polypyrimidine tract-b 99.2 6.4E-11 1.4E-15 122.0 12.5 191 289-504 151-371 (492)
57 PLN03134 glycine-rich RNA-bind 99.2 5E-11 1.1E-15 110.0 10.7 80 418-508 33-116 (144)
58 KOG0107 Alternative splicing f 99.2 2.4E-11 5.1E-16 112.8 7.6 78 286-379 8-85 (195)
59 PLN03121 nucleic acid binding 99.2 5E-11 1.1E-15 117.0 9.6 76 287-377 4-79 (243)
60 KOG1457 RNA binding protein (c 99.2 2.5E-10 5.4E-15 109.6 13.6 187 288-493 34-273 (284)
61 PLN03213 repressor of silencin 99.2 4.4E-11 9.6E-16 125.3 9.1 77 287-378 9-87 (759)
62 smart00362 RRM_2 RNA recogniti 99.2 1E-10 2.3E-15 91.4 8.6 71 290-373 1-71 (72)
63 smart00361 RRM_1 RNA recogniti 99.2 1.1E-10 2.3E-15 94.4 8.2 60 442-501 4-70 (70)
64 KOG4211 Splicing factor hnRNP- 99.2 4.2E-10 9.1E-15 118.6 14.2 163 289-501 11-177 (510)
65 PF00076 RRM_1: RNA recognitio 99.1 2E-10 4.2E-15 91.0 8.9 67 422-499 1-70 (70)
66 KOG0125 Ataxin 2-binding prote 99.1 1.2E-10 2.6E-15 117.2 9.3 81 416-507 93-175 (376)
67 KOG0125 Ataxin 2-binding prote 99.1 1.6E-10 3.6E-15 116.2 9.1 79 286-377 94-172 (376)
68 smart00360 RRM RNA recognition 99.1 2.5E-10 5.5E-15 88.7 7.9 70 293-373 1-70 (71)
69 KOG0114 Predicted RNA-binding 99.1 3.4E-10 7.4E-15 96.8 8.7 78 286-377 16-93 (124)
70 KOG0108 mRNA cleavage and poly 99.1 1.5E-10 3.1E-15 123.7 8.1 81 289-380 19-99 (435)
71 KOG4207 Predicted splicing fac 99.1 1.5E-10 3.3E-15 109.9 6.8 87 284-381 9-95 (256)
72 cd00590 RRM RRM (RNA recogniti 99.0 1.4E-09 3E-14 85.4 9.4 73 290-374 1-73 (74)
73 KOG0130 RNA-binding protein RB 99.0 5.1E-10 1.1E-14 99.9 6.8 80 287-377 71-150 (170)
74 PF14259 RRM_6: RNA recognitio 99.0 1.9E-09 4.2E-14 86.1 8.2 67 422-499 1-70 (70)
75 KOG0107 Alternative splicing f 99.0 1E-09 2.2E-14 102.1 7.3 77 419-507 10-86 (195)
76 PLN03120 nucleic acid binding 99.0 2.2E-09 4.9E-14 106.9 9.9 74 419-504 4-78 (260)
77 KOG1190 Polypyrimidine tract-b 99.0 8.1E-09 1.7E-13 106.7 14.1 185 288-505 297-490 (492)
78 smart00362 RRM_2 RNA recogniti 98.9 4.5E-09 9.8E-14 82.0 8.6 70 421-501 1-72 (72)
79 KOG0111 Cyclophilin-type pepti 98.9 6.1E-10 1.3E-14 106.6 4.1 83 287-380 9-91 (298)
80 KOG0122 Translation initiation 98.9 7.5E-09 1.6E-13 100.9 9.5 78 418-506 188-269 (270)
81 KOG4207 Predicted splicing fac 98.8 5.5E-09 1.2E-13 99.5 6.5 74 419-503 13-90 (256)
82 KOG0113 U1 small nuclear ribon 98.8 3.2E-08 6.9E-13 98.9 11.4 96 401-507 81-182 (335)
83 smart00361 RRM_1 RNA recogniti 98.8 1.5E-08 3.3E-13 81.8 7.6 61 302-373 2-69 (70)
84 TIGR01648 hnRNP-R-Q heterogene 98.8 1.4E-08 2.9E-13 112.6 9.8 74 287-379 232-307 (578)
85 smart00360 RRM RNA recognition 98.8 1.4E-08 3E-13 78.8 7.2 57 445-501 11-71 (71)
86 PLN03213 repressor of silencin 98.8 2E-08 4.4E-13 105.7 9.7 76 419-505 10-87 (759)
87 KOG0114 Predicted RNA-binding 98.8 1.7E-08 3.7E-13 86.5 7.4 79 418-507 17-96 (124)
88 KOG0117 Heterogeneous nuclear 98.8 1E-08 2.2E-13 107.0 6.9 75 287-380 258-332 (506)
89 KOG0146 RNA-binding protein ET 98.8 6.6E-09 1.4E-13 102.1 5.1 79 286-375 283-361 (371)
90 cd00590 RRM RRM (RNA recogniti 98.8 5.5E-08 1.2E-12 76.2 9.1 71 421-502 1-74 (74)
91 PLN03121 nucleic acid binding 98.7 4.6E-08 9.9E-13 96.3 9.9 75 419-505 5-80 (243)
92 KOG1456 Heterogeneous nuclear 98.7 3.2E-07 6.9E-12 94.1 16.2 193 286-503 118-360 (494)
93 KOG1456 Heterogeneous nuclear 98.7 1.5E-07 3.2E-12 96.5 13.5 164 289-506 32-199 (494)
94 KOG1996 mRNA splicing factor [ 98.7 1.7E-08 3.7E-13 100.4 5.5 84 420-510 282-370 (378)
95 KOG0121 Nuclear cap-binding pr 98.7 4.4E-08 9.5E-13 87.0 7.0 78 418-506 35-116 (153)
96 PF13893 RRM_5: RNA recognitio 98.7 7.1E-08 1.5E-12 74.1 7.1 56 305-376 1-56 (56)
97 KOG0126 Predicted RNA-binding 98.7 1.7E-08 3.7E-13 94.4 3.8 84 416-513 32-119 (219)
98 KOG1995 Conserved Zn-finger pr 98.6 2.7E-08 5.8E-13 101.9 5.5 91 286-379 64-154 (351)
99 KOG0105 Alternative splicing f 98.6 6.9E-08 1.5E-12 90.6 6.4 78 418-506 5-83 (241)
100 KOG2202 U2 snRNP splicing fact 98.6 1.3E-08 2.9E-13 100.0 1.6 89 415-503 39-145 (260)
101 KOG0109 RNA-binding protein LA 98.6 3.8E-08 8.2E-13 98.1 4.6 72 288-378 78-149 (346)
102 COG0724 RNA-binding proteins ( 98.6 2.1E-07 4.4E-12 90.8 9.0 75 419-504 115-193 (306)
103 KOG4208 Nucleolar RNA-binding 98.6 1.2E-07 2.7E-12 90.5 6.7 80 287-377 48-128 (214)
104 KOG4206 Spliceosomal protein s 98.6 1.7E-07 3.7E-12 90.8 7.7 82 421-509 11-93 (221)
105 KOG1365 RNA-binding protein Fu 98.5 6.4E-07 1.4E-11 92.2 11.9 182 289-503 162-359 (508)
106 KOG0128 RNA-binding protein SA 98.5 1.2E-08 2.5E-13 113.7 -2.5 147 286-505 665-814 (881)
107 KOG0226 RNA-binding proteins [ 98.4 3.4E-07 7.4E-12 89.9 6.0 83 287-380 189-271 (290)
108 KOG0108 mRNA cleavage and poly 98.4 6.2E-07 1.3E-11 96.2 8.1 75 420-505 19-97 (435)
109 KOG4661 Hsp27-ERE-TATA-binding 98.4 6.9E-07 1.5E-11 95.6 8.2 85 287-382 404-488 (940)
110 KOG0149 Predicted RNA-binding 98.4 5.2E-07 1.1E-11 87.8 6.0 73 420-504 13-89 (247)
111 KOG0129 Predicted RNA-binding 98.4 3.3E-06 7.2E-11 90.2 12.5 158 286-487 257-432 (520)
112 KOG0111 Cyclophilin-type pepti 98.4 2.4E-07 5.2E-12 89.1 3.4 77 419-506 10-90 (298)
113 KOG4212 RNA-binding protein hn 98.4 7.3E-07 1.6E-11 93.0 7.0 74 286-375 534-607 (608)
114 KOG0415 Predicted peptidyl pro 98.3 9.5E-07 2.1E-11 90.1 6.9 80 288-378 239-318 (479)
115 KOG4208 Nucleolar RNA-binding 98.3 2E-06 4.3E-11 82.4 8.1 76 419-505 49-129 (214)
116 KOG0120 Splicing factor U2AF, 98.3 1.3E-06 2.8E-11 94.5 7.3 187 286-504 173-367 (500)
117 KOG0533 RRM motif-containing p 98.3 2.3E-06 4.9E-11 85.2 7.8 78 288-377 83-160 (243)
118 KOG0132 RNA polymerase II C-te 98.2 2.4E-06 5.2E-11 94.7 8.1 74 287-377 420-493 (894)
119 KOG0130 RNA-binding protein RB 98.2 1.9E-06 4.2E-11 77.3 5.9 74 420-504 73-150 (170)
120 KOG4209 Splicing factor RNPS1, 98.2 1.8E-06 4E-11 85.7 5.9 80 287-378 100-179 (231)
121 KOG4205 RNA-binding protein mu 98.1 2.4E-06 5.2E-11 88.1 5.1 79 288-378 97-175 (311)
122 KOG1789 Endocytosis protein RM 98.1 6.6E-07 1.4E-11 101.3 0.8 59 20-78 952-1010(2235)
123 KOG0112 Large RNA-binding prot 98.1 2.8E-06 6E-11 95.5 4.7 163 286-509 370-534 (975)
124 KOG0116 RasGAP SH3 binding pro 98.0 8.9E-06 1.9E-10 86.9 7.6 85 286-382 286-370 (419)
125 KOG4210 Nuclear localization s 98.0 4.3E-06 9.3E-11 85.6 4.3 173 287-506 87-264 (285)
126 KOG0153 Predicted RNA-binding 98.0 1.2E-05 2.7E-10 82.2 7.3 75 287-378 227-302 (377)
127 KOG0226 RNA-binding proteins [ 98.0 7.3E-06 1.6E-10 80.7 4.4 163 289-502 97-266 (290)
128 KOG4661 Hsp27-ERE-TATA-binding 97.9 1.6E-05 3.4E-10 85.5 6.7 77 418-505 404-484 (940)
129 KOG0132 RNA polymerase II C-te 97.9 2.3E-05 4.9E-10 87.2 7.8 76 418-506 420-495 (894)
130 KOG0415 Predicted peptidyl pro 97.9 1.9E-05 4.1E-10 80.9 6.6 78 419-507 239-320 (479)
131 KOG4454 RNA binding protein (R 97.9 4.1E-06 9E-11 80.8 0.9 68 287-364 8-75 (267)
132 PF04059 RRM_2: RNA recognitio 97.9 0.00011 2.4E-09 63.3 9.5 83 289-379 2-87 (97)
133 KOG0151 Predicted splicing reg 97.9 2.6E-05 5.6E-10 85.9 6.8 80 287-377 173-255 (877)
134 KOG0153 Predicted RNA-binding 97.8 0.0001 2.2E-09 75.6 9.8 75 418-505 227-302 (377)
135 KOG4211 Splicing factor hnRNP- 97.8 0.00016 3.6E-09 77.1 11.6 79 287-377 102-180 (510)
136 PF02213 GYF: GYF domain; Int 97.8 1.7E-05 3.7E-10 61.6 3.2 52 25-76 2-54 (57)
137 cd00072 GYF GYF domain: contai 97.8 2E-05 4.3E-10 61.3 3.4 51 23-73 1-52 (57)
138 KOG4660 Protein Mei2, essentia 97.6 3.8E-05 8.2E-10 82.9 4.2 65 287-364 74-138 (549)
139 PF11608 Limkain-b1: Limkain b 97.6 0.00047 1E-08 57.5 8.6 74 420-506 3-77 (90)
140 KOG0533 RRM motif-containing p 97.5 0.00035 7.6E-09 69.7 7.8 79 418-507 82-163 (243)
141 PF11608 Limkain-b1: Limkain b 97.4 0.00086 1.9E-08 55.9 7.7 69 289-377 3-75 (90)
142 KOG4660 Protein Mei2, essentia 97.3 0.00017 3.7E-09 78.0 4.1 74 414-499 70-143 (549)
143 smart00444 GYF Contains conser 97.3 0.00035 7.6E-09 54.2 4.5 52 25-76 2-53 (56)
144 COG5175 MOT2 Transcriptional r 97.3 0.00099 2.2E-08 68.1 8.8 57 448-504 138-201 (480)
145 KOG2193 IGF-II mRNA-binding pr 97.3 4.8E-05 1E-09 79.5 -0.7 153 289-504 2-155 (584)
146 PF08952 DUF1866: Domain of un 97.1 0.0048 1E-07 56.8 10.0 79 420-505 28-106 (146)
147 KOG4307 RNA binding protein RB 97.0 0.00092 2E-08 73.9 6.1 212 288-526 311-532 (944)
148 KOG4209 Splicing factor RNPS1, 97.0 0.00073 1.6E-08 67.3 5.0 76 418-505 100-179 (231)
149 KOG0151 Predicted splicing reg 97.0 0.0012 2.5E-08 73.3 6.9 75 418-503 173-254 (877)
150 KOG4454 RNA binding protein (R 97.0 0.00042 9E-09 67.2 2.7 77 418-506 8-87 (267)
151 KOG1365 RNA-binding protein Fu 97.0 0.0028 6.2E-08 65.9 8.8 171 285-500 57-237 (508)
152 KOG1548 Transcription elongati 97.0 0.0018 4E-08 66.6 7.2 77 417-504 132-219 (382)
153 KOG4307 RNA binding protein RB 96.9 0.0023 5.1E-08 70.8 8.1 68 289-364 868-935 (944)
154 PF08777 RRM_3: RNA binding mo 96.9 0.0019 4E-08 56.6 5.8 60 444-505 15-79 (105)
155 KOG4210 Nuclear localization s 96.9 0.00047 1E-08 70.8 2.3 80 288-379 184-264 (285)
156 KOG4676 Splicing factor, argin 96.9 0.0015 3.4E-08 68.0 5.6 175 289-495 8-215 (479)
157 PF04059 RRM_2: RNA recognitio 96.8 0.0082 1.8E-07 51.8 8.9 75 420-503 2-84 (97)
158 KOG1457 RNA binding protein (c 96.7 0.0017 3.7E-08 63.2 4.0 67 286-364 208-274 (284)
159 KOG2314 Translation initiation 96.6 0.0054 1.2E-07 66.7 8.0 89 418-511 57-149 (698)
160 KOG0106 Alternative splicing f 96.6 0.0019 4.1E-08 63.3 4.1 70 421-505 3-72 (216)
161 COG5175 MOT2 Transcriptional r 96.6 0.0052 1.1E-07 63.0 7.2 85 282-377 108-201 (480)
162 KOG0116 RasGAP SH3 binding pro 96.6 0.0035 7.6E-08 67.4 5.9 74 420-505 289-366 (419)
163 KOG4849 mRNA cleavage factor I 96.5 0.0025 5.4E-08 65.5 4.4 69 288-364 80-150 (498)
164 KOG3152 TBP-binding protein, a 96.5 0.0019 4.2E-08 64.0 3.0 68 289-364 75-154 (278)
165 KOG2314 Translation initiation 96.4 0.0053 1.2E-07 66.7 6.2 76 288-374 58-139 (698)
166 PF05172 Nup35_RRM: Nup53/35/4 96.4 0.015 3.2E-07 50.5 7.5 57 445-504 20-90 (100)
167 KOG0129 Predicted RNA-binding 96.3 0.01 2.2E-07 64.1 7.5 66 284-357 366-432 (520)
168 PF08777 RRM_3: RNA binding mo 96.2 0.0097 2.1E-07 52.1 5.5 59 289-361 2-60 (105)
169 PF14605 Nup35_RRM_2: Nup53/35 95.9 0.032 6.9E-07 42.7 6.4 40 444-485 14-53 (53)
170 PF14605 Nup35_RRM_2: Nup53/35 95.6 0.022 4.7E-07 43.6 4.5 52 289-355 2-53 (53)
171 KOG1855 Predicted RNA-binding 95.6 0.015 3.3E-07 61.5 4.8 67 287-361 230-309 (484)
172 PF05172 Nup35_RRM: Nup53/35/4 95.3 0.08 1.7E-06 46.0 7.8 79 288-377 6-90 (100)
173 KOG0128 RNA-binding protein SA 95.0 0.014 3.1E-07 66.2 2.7 68 288-364 736-803 (881)
174 PF08675 RNA_bind: RNA binding 94.8 0.11 2.4E-06 43.5 6.7 55 289-360 10-64 (87)
175 KOG3152 TBP-binding protein, a 94.8 0.015 3.2E-07 57.9 1.8 67 420-497 75-157 (278)
176 KOG0115 RNA-binding protein p5 94.4 0.041 8.9E-07 54.9 4.0 65 288-361 31-95 (275)
177 PF03467 Smg4_UPF3: Smg-4/UPF3 94.4 0.056 1.2E-06 51.7 4.8 88 287-379 6-98 (176)
178 KOG2416 Acinus (induces apopto 94.4 0.065 1.4E-06 58.9 5.6 78 286-377 442-520 (718)
179 PF10309 DUF2414: Protein of u 94.0 0.26 5.7E-06 39.0 7.0 54 288-358 5-62 (62)
180 KOG1855 Predicted RNA-binding 93.6 0.082 1.8E-06 56.1 4.5 62 418-490 230-308 (484)
181 PF04847 Calcipressin: Calcipr 93.4 0.19 4E-06 48.5 6.3 60 443-504 8-69 (184)
182 KOG0112 Large RNA-binding prot 93.4 0.086 1.9E-06 60.5 4.6 78 286-378 453-530 (975)
183 KOG1995 Conserved Zn-finger pr 93.3 0.071 1.5E-06 55.5 3.4 78 420-508 67-156 (351)
184 PF15023 DUF4523: Protein of u 92.7 0.46 9.9E-06 43.8 7.3 54 446-503 106-159 (166)
185 KOG4285 Mitotic phosphoprotein 92.5 0.21 4.6E-06 51.0 5.5 50 446-498 212-261 (350)
186 KOG2416 Acinus (induces apopto 92.3 0.16 3.4E-06 56.0 4.5 76 416-504 441-520 (718)
187 KOG0115 RNA-binding protein p5 91.5 0.4 8.7E-06 48.0 6.0 90 350-494 6-98 (275)
188 KOG2202 U2 snRNP splicing fact 90.3 0.18 3.9E-06 50.4 2.4 63 303-377 83-146 (260)
189 KOG2068 MOT2 transcription fac 88.9 0.2 4.4E-06 51.8 1.6 71 286-364 75-151 (327)
190 PF11767 SET_assoc: Histone ly 88.3 1.5 3.3E-05 35.1 5.9 52 444-500 14-65 (66)
191 PF08952 DUF1866: Domain of un 88.2 1.6 3.4E-05 40.5 6.7 68 289-376 28-104 (146)
192 KOG1996 mRNA splicing factor [ 88.0 1.1 2.5E-05 45.6 6.1 55 302-364 300-355 (378)
193 KOG2253 U1 snRNP complex, subu 87.6 0.44 9.5E-06 53.3 3.2 62 286-364 38-99 (668)
194 KOG2068 MOT2 transcription fac 87.6 0.21 4.5E-06 51.8 0.7 59 448-506 98-163 (327)
195 PF07576 BRAP2: BRCA1-associat 84.9 7.6 0.00017 34.3 9.0 68 288-364 12-80 (110)
196 PF10309 DUF2414: Protein of u 84.4 3.5 7.5E-05 32.7 5.9 55 419-488 5-62 (62)
197 KOG4676 Splicing factor, argin 81.9 2 4.4E-05 45.4 4.8 75 420-506 8-90 (479)
198 KOG1862 GYF domain containing 80.5 1.7 3.6E-05 50.1 4.1 62 21-82 201-265 (673)
199 KOG2135 Proteins containing th 77.6 1.7 3.7E-05 47.0 2.7 60 443-505 386-445 (526)
200 KOG0804 Cytoplasmic Zn-finger 75.9 7.2 0.00016 42.2 6.8 82 288-379 74-159 (493)
201 KOG4285 Mitotic phosphoprotein 74.9 9.8 0.00021 39.3 7.1 70 288-375 197-266 (350)
202 PF08675 RNA_bind: RNA binding 73.8 9.4 0.0002 32.2 5.6 42 445-490 23-64 (87)
203 KOG4574 RNA-binding protein (c 73.5 2.5 5.5E-05 48.7 2.9 90 420-511 287-379 (1007)
204 KOG4574 RNA-binding protein (c 73.4 2.2 4.8E-05 49.2 2.4 75 289-378 299-373 (1007)
205 PF15023 DUF4523: Protein of u 72.1 4.7 0.0001 37.3 3.7 58 289-361 87-148 (166)
206 PF07576 BRAP2: BRCA1-associat 71.8 8.7 0.00019 34.0 5.3 40 456-495 40-81 (110)
207 KOG4410 5-formyltetrahydrofola 70.7 13 0.00028 38.0 6.8 50 286-348 328-377 (396)
208 PF03880 DbpA: DbpA RNA bindin 70.6 12 0.00027 30.2 5.6 43 456-503 32-74 (74)
209 PF03880 DbpA: DbpA RNA bindin 68.4 15 0.00032 29.8 5.6 71 290-376 2-74 (74)
210 PF03467 Smg4_UPF3: Smg-4/UPF3 63.3 14 0.0003 35.4 5.2 64 420-494 8-81 (176)
211 PF04847 Calcipressin: Calcipr 63.3 17 0.00038 35.0 5.9 60 301-377 8-69 (184)
212 PF03468 XS: XS domain; Inter 61.8 6.9 0.00015 34.9 2.7 60 419-480 8-68 (116)
213 KOG4019 Calcineurin-mediated s 59.9 12 0.00025 36.0 3.9 60 444-505 29-89 (193)
214 KOG2591 c-Mpl binding protein, 55.7 18 0.00039 40.2 5.0 71 419-503 175-249 (684)
215 KOG4849 mRNA cleavage factor I 55.2 14 0.0003 38.9 3.8 71 421-502 82-158 (498)
216 KOG0804 Cytoplasmic Zn-finger 41.6 50 0.0011 36.0 5.6 66 419-495 74-142 (493)
217 PF03468 XS: XS domain; Inter 38.8 36 0.00077 30.4 3.5 56 290-356 10-75 (116)
218 KOG2295 C2H2 Zn-finger protein 38.2 5.2 0.00011 44.2 -2.3 71 286-364 229-299 (648)
219 PF15513 DUF4651: Domain of un 37.9 1.1E+02 0.0024 24.3 5.6 54 441-510 5-60 (62)
220 KOG2591 c-Mpl binding protein, 37.5 83 0.0018 35.3 6.6 63 287-364 174-245 (684)
221 PF15519 RBM39linker: linker b 37.4 24 0.00052 28.8 2.0 16 417-432 52-67 (73)
222 cd04908 ACT_Bt0572_1 N-termina 35.0 2.1E+02 0.0045 22.0 7.4 46 445-491 16-62 (66)
223 KOG2193 IGF-II mRNA-binding pr 31.2 47 0.001 35.9 3.4 38 468-505 37-75 (584)
224 KOG4483 Uncharacterized conser 30.4 1.3E+02 0.0027 32.6 6.3 56 288-357 391-446 (528)
225 PF11767 SET_assoc: Histone ly 28.2 2.7E+02 0.0059 22.3 6.6 49 299-364 11-59 (66)
226 KOG2318 Uncharacterized conser 27.3 1.7E+02 0.0037 33.1 6.9 70 287-364 173-294 (650)
227 COG5470 Uncharacterized conser 27.3 1.8E+02 0.0039 25.2 5.6 52 435-486 13-71 (96)
228 PF15513 DUF4651: Domain of un 26.3 96 0.0021 24.7 3.5 14 303-316 9-22 (62)
229 PF01473 CW_binding_1: Putativ 25.9 49 0.0011 19.5 1.5 11 24-34 8-18 (19)
230 KOG2253 U1 snRNP complex, subu 24.3 68 0.0015 36.6 3.3 68 419-502 40-107 (668)
231 KOG2135 Proteins containing th 23.7 48 0.001 36.4 1.9 73 287-377 371-444 (526)
232 PF08734 GYD: GYD domain; Int 23.6 3.2E+02 0.007 23.0 6.7 48 443-490 21-69 (91)
233 KOG2891 Surface glycoprotein [ 21.3 64 0.0014 33.0 2.2 74 288-364 149-248 (445)
234 PF10567 Nab6_mRNP_bdg: RNA-re 20.3 98 0.0021 32.1 3.2 175 287-489 14-212 (309)
No 1
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=100.00 E-value=4.7e-60 Score=471.23 Aligned_cols=321 Identities=42% Similarity=0.662 Sum_probs=262.7
Q ss_pred eEEeeCcccccccc---CCCccccCCCCccccccccccccCCcccccccccccccccccccchhhhcccccchhccccCC
Q 009565 185 RYKWDRGLRAWVPQ---EDTSSQNDGYGIEEMTFLKEEEVFPTVNVTDDLANDEVGKEKLNSTEEKVNSADNVVEEKHNG 261 (532)
Q Consensus 185 ~y~wd~~~~~w~p~---~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~krk~~~~~~~~~~~~~~~e~~~~~ 261 (532)
.|.||.++++|||+ +|.+.||+||||...++....+. ......++++.+. ..+..
T Consensus 50 dy~wd~~k~~W~pki~~df~a~yq~nyg~~~d~s~~~~e~---------~e~~~a~~~~e~e-------------~~k~~ 107 (382)
T KOG1548|consen 50 DYIWDDEKKAWVPKIPEDFIAEYQANYGFEDDTSADATEL---------EEDGHAKKKKEDE-------------LLKNP 107 (382)
T ss_pred cceeehhhccccCCCchhHHHhhhcccCccccccccchhh---------hhhhhhhhcccch-------------hhhcc
Confidence 39999999999998 55578999999985443332211 0011111111111 11122
Q ss_pred cCCCCcchhhhhhcCCCCCCcccCCCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccE
Q 009565 262 KRKQPDKQVEKKEANKPPDSWFELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDA 341 (532)
Q Consensus 262 k~k~~~~~~~kk~~~~~~~~~~~~~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~a 341 (532)
+++.+.....++.+++++-.|+....|++|||+|||.++|.+++.++|++||.|+.||+|++|+|+||++ ..|+.||.|
T Consensus 108 ~r~~~~~~~~kk~~~e~~~~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDa 186 (382)
T KOG1548|consen 108 KRKYKVGKGEKKQKEEGEWFNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDA 186 (382)
T ss_pred cccccCccccccccCCCcccCcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCce
Confidence 2222222333333334433444578999999999999999999999999999999999999999999999 579999999
Q ss_pred EEEecCHHHHHHHHHHhCCceecCCCCeeEEEecccccccchhhhhhhhc--hHHHHhHHHHHhhhhcCCCCC--CCCCC
Q 009565 342 LVTYLKEPSVALATQLLDGTPFRPDGKIPMSVTQAKFEQKGERFIAKQVD--SKKKKKLKKVEEKMLGWGGRD--DAKLT 417 (532)
Q Consensus 342 FV~F~~~esA~~Al~~LnG~~l~~G~~~~I~V~~A~~~~kg~~~~~~~~~--~~~~~k~~k~~~k~~~~~~~~--~~~~~ 417 (532)
+|+|.+.+|+.+||++||+..|+ | +.|+|++|+|++++.+....+.. ...+++++++++++++|.+.. ..+..
T Consensus 187 Lc~y~K~ESVeLA~~ilDe~~~r-g--~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r 263 (382)
T KOG1548|consen 187 LCCYIKRESVELAIKILDEDELR-G--KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKAR 263 (382)
T ss_pred EEEeecccHHHHHHHHhCccccc-C--cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCcccccccc
Confidence 99999999999999999999998 6 67999999999999998877754 235678888999999999875 45667
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeE
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQ 497 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~ 497 (532)
..++|+|+|||+|..+..++.++.++++||++.|++||.|.+|+|+.+||.|++.|.|.+.++|..||+.|+||||+||+
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRq 343 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQ 343 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceE
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCcccccCCC---HHHHHHHHHHHHhhhhc
Q 009565 498 IHASEDDGLVNHAAIRD---LDAEASRLEQFGAELEA 531 (532)
Q Consensus 498 I~V~~~dg~~~~~~~~~---~~ee~~Rl~~~~~~le~ 531 (532)
|++++|||+++|+++++ .+++..|+++|.+|||+
T Consensus 344 l~A~i~DG~t~~~~eet~~D~e~e~~~~e~f~~~~e~ 380 (382)
T KOG1548|consen 344 LTASIWDGKTKFQTEETNEDEEEELKRLEKFAAELEA 380 (382)
T ss_pred EEEEEeCCcceeeeecccchHHHHHHHHHHHHhhhhc
Confidence 99999999999998865 45566677777777775
No 2
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=2.6e-27 Score=258.95 Aligned_cols=203 Identities=23% Similarity=0.291 Sum_probs=157.8
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+.+|+++|+++|+.||.|.. +.|++++.+|.++|||||+|.+.++|..||..|||..|.
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~- 363 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKA--------FNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG- 363 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 45689999999999999999999999999997 999999889999999999999999999999999999996
Q ss_pred CCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHH
Q 009565 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEA 445 (532)
Q Consensus 366 G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~e 445 (532)
| ..|.|.++........................+...++.. ......+|+|.||+.+.++.+|..+ .+|.+
T Consensus 364 ~--~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~s~v~~l~N~~~~~~l~~d~~~-~~~~e 434 (509)
T TIGR01642 364 D--NKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQI------GGKPTKVVQLTNLVTGDDLMDDEEY-EEIYE 434 (509)
T ss_pred C--eEEEEEECccCCCCCCccccccccccccccccchhhhccc------cCCCceEEEeccCCchhHhcCcchH-HHHHH
Confidence 4 5688888865432211000000000000000000011111 1123468999999988888777665 78999
Q ss_pred HHHHHhhccCCeeEEEEecc-------CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCC
Q 009565 446 DVQEECVKIGPVDSVKVCEN-------HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGL 506 (532)
Q Consensus 446 dLre~fskfG~V~~V~l~~~-------~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~ 506 (532)
+|+++|++||.|..|.|++. ...|+|||+|.+.++|.+||..|||++|+||.|.|.|++..
T Consensus 435 dl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 435 DVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred HHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHH
Confidence 99999999999999999864 23689999999999999999999999999999999998864
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=9.6e-27 Score=255.43 Aligned_cols=203 Identities=22% Similarity=0.337 Sum_probs=153.7
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+|||+++++++|+++|+.||.|.+ ++|.+|+.+|++||||||+|.+.++|..||..|||..|. |
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~s--------vrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elg-G 273 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVK--------CQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG-G 273 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeE--------EEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC-C
Confidence 4578999999999999999999999999997 999999889999999999999999999999999999996 4
Q ss_pred CCeeEEEeccccccc--------------------------------------c--------------------------
Q 009565 367 GKIPMSVTQAKFEQK--------------------------------------G-------------------------- 382 (532)
Q Consensus 367 ~~~~I~V~~A~~~~k--------------------------------------g-------------------------- 382 (532)
+.|+|.++..... +
T Consensus 274 --r~LrV~kAi~pP~~~~~pa~~~~~p~aaa~Aaaaa~a~~~a~~~~~~~a~~g~~~~~p~~~~~~~~~~~~~~~~~~~~ 351 (612)
T TIGR01645 274 --QYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGAAVLGPRAQSPATPSSSLPTDIGNKAVVSSA 351 (612)
T ss_pred --eEEEEEecCCCccccCCCCCCCCCchHHHHHHHHhhhhhhhhhhhhcccccccccCCCcccccccccccccccccccc
Confidence 5578766542000 0
Q ss_pred -----------------------h--hhhhh---------------------------h---------------------
Q 009565 383 -----------------------E--RFIAK---------------------------Q--------------------- 389 (532)
Q Consensus 383 -----------------------~--~~~~~---------------------------~--------------------- 389 (532)
. ..... .
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (612)
T TIGR01645 352 KKEAEEVPPLPQAAPAVVKPGPMEIPTPVPPPGLAIPSLVAPPGLVAPTEINPSFLASPRKKMKREKLPVTFGALDDTLA 431 (612)
T ss_pred CCcccCCCCCccccccccCCCCcccccCCCCccccccccCCCccccCCCcCchhhhcCcccccccccccccccccccchh
Confidence 0 00000 0
Q ss_pred -------------------------------hchHHHHhHHHHHhhhhcCCCCCC----------------------CCC
Q 009565 390 -------------------------------VDSKKKKKLKKVEEKMLGWGGRDD----------------------AKL 416 (532)
Q Consensus 390 -------------------------------~~~~~~~k~~k~~~k~~~~~~~~~----------------------~~~ 416 (532)
......+....+..++.+|..... .++
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~rp 511 (612)
T TIGR01645 432 WKEPSKEDQTSEDGKMLAIMGEAAAALALEPKKKKKEKEGEELQPKLVMNSEDASLASQEGMSIRGNSARHLVMQKLMRT 511 (612)
T ss_pred ccccchhhhhhhhhhhcccchhhHHHHhhhhhHHhhhhhhhhhcccccccccccccccccccccccchhhHHHHHhhcCC
Confidence 000000111112222334533210 012
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCC--------CcEEEEEeCCHHHHHHHHHHH
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHP--------QGVVLVRFKDRKDAQKCIELM 488 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~--------kG~aFV~F~s~eeA~kAi~~L 488 (532)
..+++|+|+|||++.++. +++++||+++|++||.|.+|.|++... .|.+||+|.+.++|.+|+..|
T Consensus 512 ~~S~vVvL~NMv~~~eld------edl~eDV~eEC~K~G~V~~v~I~~~~~~~~~~~~~~g~VfV~F~~~~~A~~A~~~L 585 (612)
T TIGR01645 512 NRSNVIVLRNMVTPQDID------EFLEGEIREECGKFGVVDRVIINFEKQGEEEDAEIIVKIFVEFSDSMEVDRAKAAL 585 (612)
T ss_pred CCCCEEEEeCCCChHHhH------HHHHHHHHHHhhcCceeEEEEEecCCCCccccccceEEEEEEECCHHHHHHHHHHh
Confidence 356799999999887763 458899999999999999999998532 345899999999999999999
Q ss_pred CCcEeCCeEEEEEeecCC
Q 009565 489 NGRWFGGRQIHASEDDGL 506 (532)
Q Consensus 489 nGr~f~GR~I~V~~~dg~ 506 (532)
|||+|+||+|++.|||+.
T Consensus 586 nGR~F~GR~V~a~~yd~~ 603 (612)
T TIGR01645 586 DGRFFGGRTVVAEAYDQI 603 (612)
T ss_pred cCCeECCeEEEEEEcCHH
Confidence 999999999999999986
No 4
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=2.6e-26 Score=248.02 Aligned_cols=207 Identities=23% Similarity=0.339 Sum_probs=157.6
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCC
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~ 367 (532)
.++|||+|||+++|+++|+++|++||.|.. |.|++++.+|.++|||||+|.+.++|.+||..|||..|. |
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~--------v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~-g- 255 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIED--------VQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELA-G- 255 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEE--------EEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEEC-C-
Confidence 589999999999999999999999999996 999999888999999999999999999999999999996 5
Q ss_pred CeeEEEecccccccchhhhhhh----h-----chHHHHhHHHHHhhhhcCC-----------------------------
Q 009565 368 KIPMSVTQAKFEQKGERFIAKQ----V-----DSKKKKKLKKVEEKMLGWG----------------------------- 409 (532)
Q Consensus 368 ~~~I~V~~A~~~~kg~~~~~~~----~-----~~~~~~k~~k~~~k~~~~~----------------------------- 409 (532)
++|.|.++............. . ..........+...+..+.
T Consensus 256 -~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (457)
T TIGR01622 256 -RPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPN 334 (457)
T ss_pred -EEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccc
Confidence 678888865211000000000 0 0000000000000000000
Q ss_pred --------------CC----CCCCCCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEE
Q 009565 410 --------------GR----DDAKLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVV 471 (532)
Q Consensus 410 --------------~~----~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~a 471 (532)
.. .........+|+|.|||.+.. ..++.++.++.+||+++|++||.|..|.|+...+.|++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~-~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~ 413 (457)
T TIGR01622 335 IPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPAT-EEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKI 413 (457)
T ss_pred ccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcc-cccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeE
Confidence 00 000113456899999998865 46677889999999999999999999999988889999
Q ss_pred EEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCC
Q 009565 472 LVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGL 506 (532)
Q Consensus 472 FV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~ 506 (532)
||+|.+.++|.+|++.|||++|+||.|.|.|+...
T Consensus 414 fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 414 YLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred EEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 99999999999999999999999999999998765
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=3.6e-26 Score=238.30 Aligned_cols=198 Identities=20% Similarity=0.305 Sum_probs=143.4
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCC
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~ 367 (532)
.++|||+|||+++|+++|+++|++||+|.+ |+|++|+.+|+++|||||+|.+.++|.+||..|||..|. |
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~--------v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~-g- 72 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIES--------CKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQ-N- 72 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEE--------EEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEEC-C-
Confidence 489999999999999999999999999997 999999999999999999999999999999999999996 5
Q ss_pred CeeEEEeccccccc----------------------------chh----hhhhh-h-------------chHHHHhHHHH
Q 009565 368 KIPMSVTQAKFEQK----------------------------GER----FIAKQ-V-------------DSKKKKKLKKV 401 (532)
Q Consensus 368 ~~~I~V~~A~~~~k----------------------------g~~----~~~~~-~-------------~~~~~~k~~k~ 401 (532)
++|.|..+..... +.. ..... . ......-+..+
T Consensus 73 -~~i~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l 151 (352)
T TIGR01661 73 -KTIKVSYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTL 151 (352)
T ss_pred -eeEEEEeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHh
Confidence 4577765532110 000 00000 0 00000001111
Q ss_pred Hhhhh---------cCCCCCC-----------------------------------------------------------
Q 009565 402 EEKML---------GWGGRDD----------------------------------------------------------- 413 (532)
Q Consensus 402 ~~k~~---------~~~~~~~----------------------------------------------------------- 413 (532)
+.... .|.....
T Consensus 152 ~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (352)
T TIGR01661 152 NGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQ 231 (352)
T ss_pred CCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhh
Confidence 10000 0000000
Q ss_pred --------------------------------CCCCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEE
Q 009565 414 --------------------------------AKLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVK 461 (532)
Q Consensus 414 --------------------------------~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~ 461 (532)
.....+.+|||+|| |.... .++|+++|++||.|.+|+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL--~~~~~---------e~~L~~~F~~fG~v~~v~ 300 (352)
T TIGR01661 232 QHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNL--SPDTD---------ETVLWQLFGPFGAVQNVK 300 (352)
T ss_pred hcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCC--CCCCC---------HHHHHHHHHhCCCeEEEE
Confidence 00011226999999 44432 258999999999999999
Q ss_pred Eecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCCc
Q 009565 462 VCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLV 507 (532)
Q Consensus 462 l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~~ 507 (532)
|+.+ .++|||||+|.+.++|.+||..|||+.|+||+|+|.|...+.
T Consensus 301 i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 301 IIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred EeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 9865 589999999999999999999999999999999999988764
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.94 E-value=1.1e-25 Score=234.92 Aligned_cols=165 Identities=24% Similarity=0.353 Sum_probs=141.8
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|+.||.|.+ |+|++|+.+|+++|||||+|.+.++|.+||..|||..|.
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~--------v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~- 175 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINT--------CRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVR- 175 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccC-
Confidence 35699999999999999999999999999997 999999999999999999999999999999999999997
Q ss_pred CCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHH
Q 009565 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEA 445 (532)
Q Consensus 366 G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~e 445 (532)
+ ++|+|.++.... .....++|+|.|| +..+ ..+
T Consensus 176 g--r~i~V~~a~p~~----------------------------------~~~~~~~lfV~nL--p~~v---------tee 208 (346)
T TIGR01659 176 N--KRLKVSYARPGG----------------------------------ESIKDTNLYVTNL--PRTI---------TDD 208 (346)
T ss_pred C--ceeeeecccccc----------------------------------cccccceeEEeCC--CCcc---------cHH
Confidence 4 568887765210 0011347999999 5544 235
Q ss_pred HHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCC--eEEEEEeecCC
Q 009565 446 DVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGG--RQIHASEDDGL 506 (532)
Q Consensus 446 dLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G--R~I~V~~~dg~ 506 (532)
+|+++|++||.|..|.|+.+ +++|||||+|.+.++|.+||+.|||..|.| ++|+|.+++..
T Consensus 209 ~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 209 QLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred HHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 89999999999999999865 568999999999999999999999999876 79999988765
No 7
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.93 E-value=1.1e-24 Score=239.18 Aligned_cols=176 Identities=16% Similarity=0.244 Sum_probs=143.2
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.+ |+|++|+.+|+++|||||+|.+.++|.+||..|||..|.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~s--------V~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~- 175 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKS--------INMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG- 175 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEE--------EEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEe-
Confidence 35589999999999999999999999999997 999999999999999999999999999999999999996
Q ss_pred CCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHH
Q 009565 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEA 445 (532)
Q Consensus 366 G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~e 445 (532)
| +.|+|.++........ ..++. .......++|||.|| +.++.+ +
T Consensus 176 G--R~IkV~rp~~~p~a~~--------------------~~~~~---~~~~~~~~rLfVgnL--p~~vte---------e 219 (612)
T TIGR01645 176 G--RNIKVGRPSNMPQAQP--------------------IIDMV---QEEAKKFNRIYVASV--HPDLSE---------T 219 (612)
T ss_pred c--ceeeeccccccccccc--------------------ccccc---cccccccceEEeecC--CCCCCH---------H
Confidence 5 5688875431110000 00000 001112358999999 555432 4
Q ss_pred HHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCC
Q 009565 446 DVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGL 506 (532)
Q Consensus 446 dLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~ 506 (532)
+|+++|++||.|.+|+|.++ .++|||||+|.+.++|.+||..|||..++|+.|+|.++-..
T Consensus 220 dLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 220 DIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Confidence 89999999999999999865 57899999999999999999999999999999999887653
No 8
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.6e-24 Score=222.91 Aligned_cols=207 Identities=25% Similarity=0.373 Sum_probs=154.9
Q ss_pred CCCCcccC--CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHH
Q 009565 278 PPDSWFEL--KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALAT 355 (532)
Q Consensus 278 ~~~~~~~~--~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al 355 (532)
|++.|... ..++-|||+.||.|+.|++|.-||.+.|.|-+ ++|++|+.+|.+||||||+|.+.+.|++||
T Consensus 71 PpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~e--------lRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Ai 142 (506)
T KOG0117|consen 71 PPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYE--------LRLMMDPFSGDNRGYAFVTFCTKEEAQEAI 142 (506)
T ss_pred CCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceee--------EEEeecccCCCCcceEEEEeecHHHHHHHH
Confidence 33446544 47899999999999999999999999999998 999999999999999999999999999999
Q ss_pred HHhCCceecCCCCeeEEEeccccccc--------c-hhh---------------hhhhhchH-----------------H
Q 009565 356 QLLDGTPFRPDGKIPMSVTQAKFEQK--------G-ERF---------------IAKQVDSK-----------------K 394 (532)
Q Consensus 356 ~~LnG~~l~~G~~~~I~V~~A~~~~k--------g-~~~---------------~~~~~~~~-----------------~ 394 (532)
+.||+.+|+.|..+.++++.++...- . +.. +.+....+ .
T Consensus 143 k~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa 222 (506)
T KOG0117|consen 143 KELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAA 222 (506)
T ss_pred HHhhCccccCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHH
Confidence 99999999988655556665553210 0 000 00000000 0
Q ss_pred HHhHHHHHhhhhcCCCCCC------------CCCCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEE
Q 009565 395 KKKLKKVEEKMLGWGGRDD------------AKLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKV 462 (532)
Q Consensus 395 ~~k~~k~~~k~~~~~~~~~------------~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l 462 (532)
..+.+-+..++.-|+.... .....-.+|||+|| +. ..++|.|+++|+.||.|++|+.
T Consensus 223 ~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL--~~---------~tTeE~lk~~F~~~G~veRVkk 291 (506)
T KOG0117|consen 223 MARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNL--ME---------STTEETLKKLFNEFGKVERVKK 291 (506)
T ss_pred HHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeecc--ch---------hhhHHHHHHHHHhccceEEeec
Confidence 1122222333444443210 11122348999999 22 2356789999999999999998
Q ss_pred eccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCCc
Q 009565 463 CENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLV 507 (532)
Q Consensus 463 ~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~~ 507 (532)
+++ ||||+|.+.++|.+|++.|||+.++|..|.|.++....
T Consensus 292 ~rD----YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~ 332 (506)
T KOG0117|consen 292 PRD----YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVD 332 (506)
T ss_pred ccc----eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChh
Confidence 864 99999999999999999999999999999999998763
No 9
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1e-24 Score=212.34 Aligned_cols=175 Identities=21% Similarity=0.341 Sum_probs=141.1
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
+..-.|||+-|.+.|+-+.|++.|.+||.|.. ++|++|..|+++||||||.|.+.++|+.||..|||.-|
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~--------akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl-- 129 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSD--------AKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL-- 129 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhcccccccc--------ceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee--
Confidence 34567999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred CCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHH
Q 009565 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEA 445 (532)
Q Consensus 366 G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~e 445 (532)
|+ |.|+-..|.-+. .....+ ... . ..+.. ......++||+.|+ +..+.+ +
T Consensus 130 G~-R~IRTNWATRKp--~e~n~~------~lt---f-deV~N------Qssp~NtsVY~G~I--~~~lte---------~ 179 (321)
T KOG0148|consen 130 GR-RTIRTNWATRKP--SEMNGK------PLT---F-DEVYN------QSSPDNTSVYVGNI--ASGLTE---------D 179 (321)
T ss_pred cc-ceeeccccccCc--cccCCC------Ccc---H-HHHhc------cCCCCCceEEeCCc--CccccH---------H
Confidence 44 567777765221 000000 000 0 11111 12234579999999 333332 4
Q ss_pred HHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEe
Q 009565 446 DVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASE 502 (532)
Q Consensus 446 dLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~ 502 (532)
+||+.|+.||+|..|+|+++. ||+||+|.+.|.|.+||..|||..++|..|+|++
T Consensus 180 ~mr~~Fs~fG~I~EVRvFk~q--GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 180 LMRQTFSPFGPIQEVRVFKDQ--GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred HHHHhcccCCcceEEEEeccc--ceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 799999999999999999876 9999999999999999999999999999999977
No 10
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.91 E-value=2.8e-24 Score=226.47 Aligned_cols=204 Identities=25% Similarity=0.369 Sum_probs=151.5
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCCC
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~~ 368 (532)
.+|||+||.+++|++.|+.+|+.||.|.. |.+.+|..||.+||||||+|.+.++|.+|+..|||.+|- |
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~--------v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelA-G-- 347 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIEN--------VQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELA-G-- 347 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCccccee--------eeeccccccccccCcceEEEecHHHHHHHHHHhccceec-C--
Confidence 34999999999999999999999999996 999999789999999999999999999999999998887 6
Q ss_pred eeEEEeccccc--ccch------------hhhhhhhc--hHHHHh-------------------HHHHHhhhhcCCCC--
Q 009565 369 IPMSVTQAKFE--QKGE------------RFIAKQVD--SKKKKK-------------------LKKVEEKMLGWGGR-- 411 (532)
Q Consensus 369 ~~I~V~~A~~~--~kg~------------~~~~~~~~--~~~~~k-------------------~~k~~~k~~~~~~~-- 411 (532)
+.|+|..-... .+.. ...+.... .+-..+ +.++.... ..++.
T Consensus 348 r~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~-~~~~~~~ 426 (549)
T KOG0147|consen 348 RLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAA-QFNGVVR 426 (549)
T ss_pred ceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHH-hhcCCcC
Confidence 45666533211 1100 00000000 000000 00000000 11110
Q ss_pred --CCCCC-------CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHH
Q 009565 412 --DDAKL-------TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQ 482 (532)
Q Consensus 412 --~~~~~-------~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~ 482 (532)
...+. ....|+.|+|||.|.+. +.+.|..+|++||.++|++||.|..|.|..+. -|++||+|.+.+.|.
T Consensus 427 ~~~~~p~~~~p~~~i~t~C~lL~nMFdpste-te~n~d~eI~edV~Eec~k~g~v~hi~vd~ns-~g~VYvrc~s~~~A~ 504 (549)
T KOG0147|consen 427 VRSVDPADASPAFDIPTQCLLLSNMFDPSTE-TEPNWDQEIREDVIEECGKHGKVCHIFVDKNS-AGCVYVRCPSAEAAG 504 (549)
T ss_pred ccccCccccccccCCccHHHHHhhcCCcccc-cCcchhhHHHHHHHHHHHhcCCeeEEEEccCC-CceEEEecCcHHHHH
Confidence 00011 23458999999999874 67889999999999999999999999987764 499999999999999
Q ss_pred HHHHHHCCcEeCCeEEEEEeecCC
Q 009565 483 KCIELMNGRWFGGRQIHASEDDGL 506 (532)
Q Consensus 483 kAi~~LnGr~f~GR~I~V~~~dg~ 506 (532)
.|+.+|||+||.||.|.+.|---.
T Consensus 505 ~a~~alhgrWF~gr~Ita~~~~~~ 528 (549)
T KOG0147|consen 505 TAVKALHGRWFAGRMITAKYLPLE 528 (549)
T ss_pred HHHHHHhhhhhccceeEEEEeehh
Confidence 999999999999999999886543
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=4.8e-23 Score=222.56 Aligned_cols=174 Identities=21% Similarity=0.357 Sum_probs=141.0
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
+..++|||+|||+++|+++|+++|++||.|.. |+|++|+.+|.++|||||+|.+.++|.+||. |+|..|.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~--------v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~- 156 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRD--------VQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLL- 156 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEEC-
Confidence 45689999999999999999999999999997 9999999999999999999999999999995 9999997
Q ss_pred CCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHH
Q 009565 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEA 445 (532)
Q Consensus 366 G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~e 445 (532)
| ++|.|..+....... .... ....+ .....++|+|.|| |..+. .+
T Consensus 157 g--~~i~v~~~~~~~~~~---------------~~~~---~~~~~----~~p~~~~l~v~nl--~~~~t---------e~ 201 (457)
T TIGR01622 157 G--RPIIVQSSQAEKNRA---------------AKAA---THQPG----DIPNFLKLYVGNL--HFNIT---------EQ 201 (457)
T ss_pred C--eeeEEeecchhhhhh---------------hhcc---cccCC----CCCCCCEEEEcCC--CCCCC---------HH
Confidence 5 567776554211000 0000 00000 1112579999999 55442 35
Q ss_pred HHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeec
Q 009565 446 DVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDD 504 (532)
Q Consensus 446 dLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~d 504 (532)
+|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+|+..|||..|.|++|.|.|+.
T Consensus 202 ~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 202 ELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred HHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 89999999999999999854 568999999999999999999999999999999999976
No 12
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.90 E-value=8.9e-23 Score=223.83 Aligned_cols=205 Identities=23% Similarity=0.415 Sum_probs=144.2
Q ss_pred CCCCCcccC--CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHH
Q 009565 277 KPPDSWFEL--KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALA 354 (532)
Q Consensus 277 ~~~~~~~~~--~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~A 354 (532)
.|++.|... ...++|||+|||+++++++|+++|++||.|.+ |+|++| .+|+++|||||+|.+.++|++|
T Consensus 45 ~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~--------vrl~~D-~sG~sRGfaFV~F~~~e~A~~A 115 (578)
T TIGR01648 45 GPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYE--------LRLMMD-FSGQNRGYAFVTFCGKEEAKEA 115 (578)
T ss_pred CCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEE--------EEEEEC-CCCCccceEEEEeCCHHHHHHH
Confidence 344456433 35799999999999999999999999999997 999999 7999999999999999999999
Q ss_pred HHHhCCceecCCCCeeEEEeccccc-----------ccchh---------------hhhhh-h--------------ch-
Q 009565 355 TQLLDGTPFRPDGKIPMSVTQAKFE-----------QKGER---------------FIAKQ-V--------------DS- 392 (532)
Q Consensus 355 l~~LnG~~l~~G~~~~I~V~~A~~~-----------~kg~~---------------~~~~~-~--------------~~- 392 (532)
|+.||+..|..|. .|.|..+... ..... ..... . ..
T Consensus 116 i~~lng~~i~~Gr--~l~V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~e 193 (578)
T TIGR01648 116 VKLLNNYEIRPGR--LLGVCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHR 193 (578)
T ss_pred HHHcCCCeecCCc--cccccccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHH
Confidence 9999999997442 3443322100 00000 00000 0 00
Q ss_pred HHHHhHHHHH-hhh--------hcCCCCCC----CCCCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhcc--CCe
Q 009565 393 KKKKKLKKVE-EKM--------LGWGGRDD----AKLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKI--GPV 457 (532)
Q Consensus 393 ~~~~k~~k~~-~k~--------~~~~~~~~----~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskf--G~V 457 (532)
.....+.++. .++ ..|..... ......++|+|+|| +..+. .++|+++|++| |.|
T Consensus 194 dAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL--~~~~t---------ee~L~~~F~~f~~G~I 262 (578)
T TIGR01648 194 AAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNL--MTTTT---------EEIIEKSFSEFKPGKV 262 (578)
T ss_pred HHHHHHHHhhccceEecCceEEEEeecccccccccccccccEEEEeCC--CCCCC---------HHHHHHHHHhcCCCce
Confidence 0000011111 111 12322111 11223468999999 44432 35899999999 999
Q ss_pred eEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCCc
Q 009565 458 DSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLV 507 (532)
Q Consensus 458 ~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~~ 507 (532)
.+|.+++ +||||+|.+.++|.+|+..|||..|+|+.|+|+++....
T Consensus 263 ~rV~~~r----gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 263 ERVKKIR----DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred EEEEeec----CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 9998764 799999999999999999999999999999999997653
No 13
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=3.7e-23 Score=200.31 Aligned_cols=251 Identities=20% Similarity=0.287 Sum_probs=174.1
Q ss_pred CCCccccCCCCccccccccccccCCcccccccccccccccccccchhhhcccccchhccccCCcCCCCcchhhhhhcCCC
Q 009565 199 EDTSSQNDGYGIEEMTFLKEEEVFPTVNVTDDLANDEVGKEKLNSTEEKVNSADNVVEEKHNGKRKQPDKQVEKKEANKP 278 (532)
Q Consensus 199 ~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~krk~~~~~~~~~~~~~~~e~~~~~k~k~~~~~~~kk~~~~~ 278 (532)
|....+..+|||.. |..++|+.++.+..+-.....+ .-+-..++|.
T Consensus 76 DKitGqSLGYGFVN--Yv~p~DAe~AintlNGLrLQ~K--------------------------------TIKVSyARPS 121 (360)
T KOG0145|consen 76 DKITGQSLGYGFVN--YVRPKDAEKAINTLNGLRLQNK--------------------------------TIKVSYARPS 121 (360)
T ss_pred ccccccccccceee--ecChHHHHHHHhhhcceeeccc--------------------------------eEEEEeccCC
Confidence 44567889999965 7777766555554433211100 0111233333
Q ss_pred CCCcccCCCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHh
Q 009565 279 PDSWFELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLL 358 (532)
Q Consensus 279 ~~~~~~~~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~L 358 (532)
.+. -+..+|||++||..+|..+|..+|++||.|.. -+|..|..+|.+||.|||.|.+...|+.||..|
T Consensus 122 s~~----Ik~aNLYvSGlPktMtqkelE~iFs~fGrIIt--------SRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~l 189 (360)
T KOG0145|consen 122 SDS----IKDANLYVSGLPKTMTQKELEQIFSPFGRIIT--------SRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGL 189 (360)
T ss_pred hhh----hcccceEEecCCccchHHHHHHHHHHhhhhhh--------hhhhhhcccceecceeEEEecchhHHHHHHHhc
Confidence 322 35688999999999999999999999999986 788888889999999999999999999999999
Q ss_pred CCceecCCCCeeEEEecccccccchhhh--hh-----hh-------chHHHHhHH---HHHhhhhcCCCC----------
Q 009565 359 DGTPFRPDGKIPMSVTQAKFEQKGERFI--AK-----QV-------DSKKKKKLK---KVEEKMLGWGGR---------- 411 (532)
Q Consensus 359 nG~~l~~G~~~~I~V~~A~~~~kg~~~~--~~-----~~-------~~~~~~k~~---k~~~k~~~~~~~---------- 411 (532)
||..-. |+.-+|.|.+|.......... .. .. ....+.++. ....-+..+.+-
T Consensus 190 NG~~P~-g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~ 268 (360)
T KOG0145|consen 190 NGQKPS-GCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAG 268 (360)
T ss_pred cCCCCC-CCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeee
Confidence 999876 898999999987532211100 00 00 000000000 000000011100
Q ss_pred --CCCCCCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHH
Q 009565 412 --DDAKLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCI 485 (532)
Q Consensus 412 --~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi 485 (532)
-...+...-||||.|| .++. |+. -|.++|.+||.|.+|+|+++ +.+||+||.+.+.++|..||
T Consensus 269 ~~lp~~~~~g~ciFvYNL--spd~--de~-------~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi 337 (360)
T KOG0145|consen 269 VNLPGGPGGGWCIFVYNL--SPDA--DES-------ILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 337 (360)
T ss_pred eccCCCCCCeeEEEEEec--CCCc--hHh-------HHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHH
Confidence 0112223459999999 2322 222 47899999999999999986 67899999999999999999
Q ss_pred HHHCCcEeCCeEEEEEeecCCc
Q 009565 486 ELMNGRWFGGRQIHASEDDGLV 507 (532)
Q Consensus 486 ~~LnGr~f~GR~I~V~~~dg~~ 507 (532)
..|||..+++|.|.|+|...+.
T Consensus 338 ~sLNGy~lg~rvLQVsFKtnk~ 359 (360)
T KOG0145|consen 338 ASLNGYRLGDRVLQVSFKTNKA 359 (360)
T ss_pred HHhcCccccceEEEEEEecCCC
Confidence 9999999999999999987653
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.90 E-value=1.6e-22 Score=224.41 Aligned_cols=184 Identities=21% Similarity=0.358 Sum_probs=143.4
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||.++|+++|+++|++||.|.+ +.++++ .+|.++|||||.|.+.++|.+|++.|||..|..
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~--------~~i~~~-~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~ 246 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITS--------AAVMKD-GSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGL 246 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEE--------EEEEEC-CCCCcccEEEEEECCHHHHHHHHHHhCCcEecc
Confidence 34588999999999999999999999999997 999998 589999999999999999999999999999951
Q ss_pred C--CCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHH
Q 009565 366 D--GKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSEL 443 (532)
Q Consensus 366 G--~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei 443 (532)
. + ..|.|.++.......... +......... .......++|+|+|| +..++
T Consensus 247 ~~~g-~~l~v~~a~~k~er~~~~--------~~~~~~~~~~--------~~~~~~~~~l~V~nl--~~~~~--------- 298 (562)
T TIGR01628 247 AKEG-KKLYVGRAQKRAEREAEL--------RRKFEELQQE--------RKMKAQGVNLYVKNL--DDTVT--------- 298 (562)
T ss_pred cccc-eeeEeecccChhhhHHHH--------HhhHHhhhhh--------hhcccCCCEEEEeCC--CCccC---------
Confidence 0 2 568887776332111100 0000000000 001123458999999 44432
Q ss_pred HHHHHHHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCC
Q 009565 444 EADVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGL 506 (532)
Q Consensus 444 ~edLre~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~ 506 (532)
.++|+++|++||.|++|+|+.+ .++|||||+|.+.++|.+|+..|||+.|+|++|.|.++..+
T Consensus 299 ~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 299 DEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred HHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 3589999999999999999865 57899999999999999999999999999999999988754
No 15
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=4.6e-23 Score=211.35 Aligned_cols=181 Identities=23% Similarity=0.379 Sum_probs=150.3
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCCC
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~~ 368 (532)
-++||+.+|..+||.+|+++|++||.|.+ |.|++|+.||.++|||||.|.+.++|.+|+..|+.....+|..
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~V~e--------inl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~ 106 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGNVYE--------INLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMH 106 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCceeE--------EEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCC
Confidence 56999999999999999999999999998 9999999999999999999999999999999999988777888
Q ss_pred eeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHHHHH
Q 009565 369 IPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEADVQ 448 (532)
Q Consensus 369 ~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLr 448 (532)
.+|.|.+|.-.... ....+.|||+-| +. ...+.+|+
T Consensus 107 ~pvqvk~Ad~E~er---------------------------------~~~e~KLFvg~l--sK---------~~te~evr 142 (510)
T KOG0144|consen 107 HPVQVKYADGERER---------------------------------IVEERKLFVGML--SK---------QCTENEVR 142 (510)
T ss_pred cceeecccchhhhc---------------------------------cccchhhhhhhc--cc---------cccHHHHH
Confidence 89999888733111 011235666666 22 22456999
Q ss_pred HHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCc-EeCC--eEEEEEeecCCcccccCCCHHHHHHHH
Q 009565 449 EECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGR-WFGG--RQIHASEDDGLVNHAAIRDLDAEASRL 522 (532)
Q Consensus 449 e~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr-~f~G--R~I~V~~~dg~~~~~~~~~~~ee~~Rl 522 (532)
++|++||.|+.|.|.++ .+||||||+|.+.+.|..||+.|||. .+.| .+|.|.|+|.+. +..-+||
T Consensus 143 ~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqk--------dk~~~~l 214 (510)
T KOG0144|consen 143 EIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQK--------DKDGKRL 214 (510)
T ss_pred HHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCC--------CchHHHH
Confidence 99999999999999876 78999999999999999999999995 4666 689999999863 2344566
Q ss_pred HHHHhhh
Q 009565 523 EQFGAEL 529 (532)
Q Consensus 523 ~~~~~~l 529 (532)
..+..||
T Consensus 215 qq~~~~~ 221 (510)
T KOG0144|consen 215 QQLNPAL 221 (510)
T ss_pred HhhhHHH
Confidence 6666555
No 16
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.89 E-value=2.3e-22 Score=223.08 Aligned_cols=162 Identities=16% Similarity=0.280 Sum_probs=137.5
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCCC
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~~ 368 (532)
.+|||+|||+++|+++|+++|++||.|.+ |+|.+|+.+++++|||||+|.+.++|.+||..||+..|. |
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~--------v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~-g-- 69 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLS--------VRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLG-G-- 69 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC-C--
Confidence 36999999999999999999999999997 999999989999999999999999999999999999997 5
Q ss_pred eeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHHHHH
Q 009565 369 IPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEADVQ 448 (532)
Q Consensus 369 ~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLr 448 (532)
++|+|.++.... ........+|+|+|| +.++. .++|+
T Consensus 70 k~i~i~~s~~~~--------------------------------~~~~~~~~~vfV~nL--p~~~~---------~~~L~ 106 (562)
T TIGR01628 70 KPIRIMWSQRDP--------------------------------SLRRSGVGNIFVKNL--DKSVD---------NKALF 106 (562)
T ss_pred eeEEeecccccc--------------------------------cccccCCCceEEcCC--CccCC---------HHHHH
Confidence 567776654110 000112347999999 55542 24899
Q ss_pred HHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeec
Q 009565 449 EECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDD 504 (532)
Q Consensus 449 e~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~d 504 (532)
+.|++||.|.+|+|..+ +++|||||+|.+.++|.+||..|||..+.|+.|.|....
T Consensus 107 ~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~ 165 (562)
T TIGR01628 107 DTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFI 165 (562)
T ss_pred HHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccc
Confidence 99999999999998765 578999999999999999999999999999999996643
No 17
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=3.8e-21 Score=201.91 Aligned_cols=193 Identities=24% Similarity=0.302 Sum_probs=148.3
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCC
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~ 367 (532)
+.+|||++||++++.++|.++|+.+|+|.. +.+++++.++.++|||||+|.-.++++.|+..++++.|. |
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~--------~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~-G- 74 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKH--------AVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFE-G- 74 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcce--------eEEecCCCcccccCccceeeehHhHHHHHHHHhhcCccc-c-
Confidence 378999999999999999999999999997 999999989999999999999999999999999999996 5
Q ss_pred CeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCC-CCCCcEEEEecccCCcccCcchhhHHHHHHH
Q 009565 368 KIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAK-LTIPATVILRFMFTPAEMRADENLRSELEAD 446 (532)
Q Consensus 368 ~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~-~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~ed 446 (532)
+.|.|..|........... .....-.+.+ .-....... ......|+|+|| |... .+ .|
T Consensus 75 -r~l~v~~A~~R~r~e~~~~-~e~~~veK~~--------~q~~~~k~~v~~~k~rLIIRNL--Pf~~-k~--------~d 133 (678)
T KOG0127|consen 75 -RILNVDPAKKRARSEEVEK-GENKAVEKPI--------EQKRPTKAKVDLPKWRLIIRNL--PFKC-KK--------PD 133 (678)
T ss_pred -eecccccccccccchhccc-ccchhhhccc--------ccCCcchhhccCccceEEeecC--Cccc-Cc--------HH
Confidence 5588887764432221000 0000000000 000000000 011348999999 4433 22 38
Q ss_pred HHHHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCCccccc
Q 009565 447 VQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLVNHAA 511 (532)
Q Consensus 447 Lre~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~~~~~~ 511 (532)
|..+|+.||.|..|.|++. .-.|||||+|....+|.+|++.|||..|+||+|-|.|+-.+..|..
T Consensus 134 Lk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ 201 (678)
T KOG0127|consen 134 LKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYED 201 (678)
T ss_pred HHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccc
Confidence 9999999999999999965 4469999999999999999999999999999999999999877764
No 18
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=4.9e-21 Score=201.09 Aligned_cols=196 Identities=26% Similarity=0.353 Sum_probs=139.5
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCC
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~ 367 (532)
..+|.|+|||+.+...+|+.+|+.||.|.+ |.|++.+ .|+..|||||.|...-.|..||+.|||..|. |
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~E--------i~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~-g- 185 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVE--------IVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKID-G- 185 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEE--------EEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceec-C-
Confidence 367999999999999999999999999998 9999885 4555699999999999999999999999996 5
Q ss_pred CeeEEEecccccc--cchhhhhhh-----hchH-HHH----hHH-----------------HHH--------hhhhcCCC
Q 009565 368 KIPMSVTQAKFEQ--KGERFIAKQ-----VDSK-KKK----KLK-----------------KVE--------EKMLGWGG 410 (532)
Q Consensus 368 ~~~I~V~~A~~~~--kg~~~~~~~-----~~~~-~~~----k~~-----------------k~~--------~k~~~~~~ 410 (532)
++|.|.+|-... ......... .... .+. ... .++ .....-..
T Consensus 186 -R~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~ 264 (678)
T KOG0127|consen 186 -RPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDD 264 (678)
T ss_pred -ceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccc
Confidence 678887775322 111100000 0000 000 000 000 00000000
Q ss_pred CCC-------------------CCCCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CC
Q 009565 411 RDD-------------------AKLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HP 467 (532)
Q Consensus 411 ~~~-------------------~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~ 467 (532)
.++ .......+|||+|| |.+. .++.|.++|++||.|.++.|+.+ |+
T Consensus 265 vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL--~fD~---------tEEel~~~fskFG~v~ya~iV~~k~T~~s 333 (678)
T KOG0127|consen 265 VDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNL--PFDT---------TEEELKEHFSKFGEVKYAIIVKDKDTGHS 333 (678)
T ss_pred cccccccccCcccchhccccccccccccceEEEecC--Cccc---------cHHHHHHHHHhhccceeEEEEeccCCCCc
Confidence 000 00112359999999 5543 45689999999999999988744 89
Q ss_pred CcEEEEEeCCHHHHHHHHHHH-----CC-cEeCCeEEEEEeecCC
Q 009565 468 QGVVLVRFKDRKDAQKCIELM-----NG-RWFGGRQIHASEDDGL 506 (532)
Q Consensus 468 kG~aFV~F~s~eeA~kAi~~L-----nG-r~f~GR~I~V~~~dg~ 506 (532)
+|+|||.|.+..+|+.||.+. .| ..+.||.|.|..+-++
T Consensus 334 kGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 334 KGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred ccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccch
Confidence 999999999999999999987 24 7899999999888775
No 19
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.84 E-value=3.9e-20 Score=201.76 Aligned_cols=167 Identities=18% Similarity=0.128 Sum_probs=130.1
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHh--CCceecCC
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLL--DGTPFRPD 366 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~L--nG~~l~~G 366 (532)
+.|||+|||+++|+++|+++|++||.|.. |+|+++ ||||||+|.+.++|..||..| ++..|. |
T Consensus 3 ~vv~V~nLp~~~te~~L~~~f~~fG~V~~--------v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~-g 67 (481)
T TIGR01649 3 PVVHVRNLPQDVVEADLVEALIPFGPVSY--------VMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIR-G 67 (481)
T ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEc-C
Confidence 68999999999999999999999999997 888854 689999999999999999864 778886 5
Q ss_pred CCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHHH
Q 009565 367 GKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEAD 446 (532)
Q Consensus 367 ~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~ed 446 (532)
++|.|.++........ .. ..........-.+|+|.|| +..++ .++
T Consensus 68 --~~l~v~~s~~~~~~~~-----~~-----------------~~~~~~~~~~~~~v~v~nl--~~~vt---------~~~ 112 (481)
T TIGR01649 68 --QPAFFNYSTSQEIKRD-----GN-----------------SDFDSAGPNKVLRVIVENP--MYPIT---------LDV 112 (481)
T ss_pred --eEEEEEecCCcccccC-----CC-----------------CcccCCCCCceEEEEEcCC--CCCCC---------HHH
Confidence 6789988763210000 00 0000011112347889998 33332 248
Q ss_pred HHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCC--eEEEEEeecC
Q 009565 447 VQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGG--RQIHASEDDG 505 (532)
Q Consensus 447 Lre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G--R~I~V~~~dg 505 (532)
|+++|++||.|.+|.|+++...|+|||+|.+.++|.+|++.|||..+.| ++|+|.|+..
T Consensus 113 L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~ 173 (481)
T TIGR01649 113 LYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKP 173 (481)
T ss_pred HHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecC
Confidence 9999999999999999987767899999999999999999999999854 5888888764
No 20
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.84 E-value=9e-21 Score=175.74 Aligned_cols=166 Identities=22% Similarity=0.343 Sum_probs=137.9
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
....+|||+||+..+|++.|.++|-++|+|.. |+|.+|+.+...+|||||+|.++++|+-||+.||...|.
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~--------i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLY- 77 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVN--------LHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLY- 77 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceee--------eecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhc-
Confidence 56789999999999999999999999999996 999999999999999999999999999999999998888
Q ss_pred CCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHH
Q 009565 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEA 445 (532)
Q Consensus 366 G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~e 445 (532)
| ++|+|..+.-..+ .......++|+||- +++ |+ .
T Consensus 78 g--rpIrv~kas~~~~---------------------------------nl~vganlfvgNLd--~~v--De-------~ 111 (203)
T KOG0131|consen 78 G--RPIRVNKASAHQK---------------------------------NLDVGANLFVGNLD--PEV--DE-------K 111 (203)
T ss_pred C--ceeEEEecccccc---------------------------------cccccccccccccC--cch--hH-------H
Confidence 6 7899988771110 11123579999992 222 32 2
Q ss_pred HHHHHhhccCCeeEE-EEec----cCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCC
Q 009565 446 DVQEECVKIGPVDSV-KVCE----NHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGL 506 (532)
Q Consensus 446 dLre~fskfG~V~~V-~l~~----~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~ 506 (532)
-|...|++||.+.+. .+++ .+++||+||.|.+.+.+.+||.+|||..+..|+|+|+|+--+
T Consensus 112 ~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~ 177 (203)
T KOG0131|consen 112 LLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKK 177 (203)
T ss_pred HHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEec
Confidence 467889999987653 2222 278999999999999999999999999999999999997654
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.84 E-value=3.3e-20 Score=203.02 Aligned_cols=196 Identities=15% Similarity=0.211 Sum_probs=131.8
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccC--CCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCcee
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKED--PETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPF 363 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d--~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l 363 (532)
+..++|||+|||+++|+++|+++|..|+.+..- ...+.+...+. .+..+|||||+|.+.++|..|| .|||..|
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~----~~~~kg~afVeF~~~e~A~~Al-~l~g~~~ 247 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN----INKEKNFAFLEFRTVEEATFAM-ALDSIIY 247 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE----ECCCCCEEEEEeCCHHHHhhhh-cCCCeEe
Confidence 456899999999999999999999987332210 00011212222 3456899999999999999999 5999999
Q ss_pred cCCCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHH
Q 009565 364 RPDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSEL 443 (532)
Q Consensus 364 ~~G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei 443 (532)
. | +.|.|.+................. .....................+++|||.|| |..+.
T Consensus 248 ~-g--~~l~v~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl--p~~~~--------- 308 (509)
T TIGR01642 248 S-N--VFLKIRRPHDYIPVPQITPEVSQK-----NPDDNAKNVEKLVNSTTVLDSKDRIYIGNL--PLYLG--------- 308 (509)
T ss_pred e-C--ceeEecCccccCCccccCCCCCCC-----CCcccccccccccccccCCCCCCEEEEeCC--CCCCC---------
Confidence 7 5 668887654211000000000000 000000000000000111234569999999 55542
Q ss_pred HHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecC
Q 009565 444 EADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDG 505 (532)
Q Consensus 444 ~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg 505 (532)
.++|+++|+.||.|..+.|+.+ .++|||||+|.+.++|..||..|||..|+|+.|.|.++..
T Consensus 309 ~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 309 EDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred HHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 2489999999999999998754 5789999999999999999999999999999999999754
No 22
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.83 E-value=7.6e-20 Score=199.52 Aligned_cols=191 Identities=18% Similarity=0.231 Sum_probs=135.8
Q ss_pred CCcEEEEECCCC-CCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 287 VNTHVYVTGLPD-DVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 287 ~~~~VyV~nLP~-~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
.+++|||+|||+ .+|+++|+++|+.||.|.. |+|++++ +|||||+|.+.++|..||..|||..|.
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~--------vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~- 339 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVER--------VKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLF- 339 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEE--------EEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 568999999998 6999999999999999996 9999873 699999999999999999999999997
Q ss_pred CCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCC----CCCCCCCcEEEEecccCCcccCcchhhHH
Q 009565 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRD----DAKLTIPATVILRFMFTPAEMRADENLRS 441 (532)
Q Consensus 366 G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~----~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ 441 (532)
| ++|+|..++...................+ .....+........ ........+|+|.|| |..+.
T Consensus 340 g--~~l~v~~s~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NL--p~~~t------- 407 (481)
T TIGR01649 340 G--KPLRVCPSKQQNVQPPREGQLDDGLTSYK-DYSSSRNHRFKKPGSANKNNIQPPSATLHLSNI--PLSVS------- 407 (481)
T ss_pred C--ceEEEEEcccccccCCCCCcCcCCCcccc-cccCCccccCCCcccccccccCCCCcEEEEecC--CCCCC-------
Confidence 5 56888877543210000000000000000 00000000000000 001123458999999 55542
Q ss_pred HHHHHHHHHhhccCC--eeEEEEecc--CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeE------EEEEeecC
Q 009565 442 ELEADVQEECVKIGP--VDSVKVCEN--HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQ------IHASEDDG 505 (532)
Q Consensus 442 ei~edLre~fskfG~--V~~V~l~~~--~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~------I~V~~~dg 505 (532)
.++|+++|+.||. |..|+++.. ..+|+|||+|.+.++|.+||..|||+.|+|+. |+|+|...
T Consensus 408 --ee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 408 --EEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred --HHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccC
Confidence 2489999999998 899988754 34799999999999999999999999999985 99988754
No 23
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=4.2e-20 Score=179.15 Aligned_cols=163 Identities=23% Similarity=0.370 Sum_probs=140.2
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..|+|.|.-||.++|.++|+.+|+..|.|.+ |+|++|+.+|++-|||||.|.++.+|++||..|||-.+.
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiES--------cKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ-- 109 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIES--------CKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQ-- 109 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceee--------eeeeeccccccccccceeeecChHHHHHHHhhhcceeec--
Confidence 4588999999999999999999999999998 999999999999999999999999999999999999996
Q ss_pred CCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHHH
Q 009565 367 GKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEAD 446 (532)
Q Consensus 367 ~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~ed 446 (532)
.+.|+|++|...... -....+||..| |..+ ++.+
T Consensus 110 -~KTIKVSyARPSs~~----------------------------------Ik~aNLYvSGl--PktM---------tqke 143 (360)
T KOG0145|consen 110 -NKTIKVSYARPSSDS----------------------------------IKDANLYVSGL--PKTM---------TQKE 143 (360)
T ss_pred -cceEEEEeccCChhh----------------------------------hcccceEEecC--Cccc---------hHHH
Confidence 267999998843100 01237999999 6665 3468
Q ss_pred HHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCC--eEEEEEeecC
Q 009565 447 VQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGG--RQIHASEDDG 505 (532)
Q Consensus 447 Lre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G--R~I~V~~~dg 505 (532)
|.++|++||.|..-+|.-+ .++|++||+|....+|..||..|||..--| -+|.|.|+..
T Consensus 144 lE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFann 208 (360)
T KOG0145|consen 144 LEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANN 208 (360)
T ss_pred HHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCC
Confidence 8999999999877766543 678999999999999999999999998877 5799988754
No 24
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=3.2e-20 Score=198.08 Aligned_cols=202 Identities=26% Similarity=0.366 Sum_probs=159.8
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
.....+||+|||..+++++++++...||.+.. ..++.|..+|.++||||++|.++.....|+..|||+.+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~--------f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~l-- 356 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKA--------FRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQL-- 356 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchh--------heeecccccccccceeeeeeeCCcchhhhhcccchhhh--
Confidence 45688999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred CCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHH
Q 009565 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEA 445 (532)
Q Consensus 366 G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~e 445 (532)
|. ..|.|++|...........+.... ....+..... ........++++.||.+|.++.+|.++ .+|.|
T Consensus 357 gd-~~lvvq~A~~g~~~~~~~~~~~~~----~~~~i~~~~~------q~~g~~t~Vl~L~n~Vt~deLkdd~Ey-eeIlE 424 (500)
T KOG0120|consen 357 GD-KKLVVQRAIVGASNANVNFNISQS----QVPGIPLLMT------QMAGIPTEVLCLTNVVTPDELKDDEEY-EEILE 424 (500)
T ss_pred cC-ceeEeehhhccchhccccCCcccc----ccccchhhhc------ccCCCcchhhhhhhcCCHHHhcchHHH-HHHHH
Confidence 44 468898887543222111110000 0000000000 001112347889999999999866555 89999
Q ss_pred HHHHHhhccCCeeEEEEecc-------CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCCcccc
Q 009565 446 DVQEECVKIGPVDSVKVCEN-------HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLVNHA 510 (532)
Q Consensus 446 dLre~fskfG~V~~V~l~~~-------~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~~~~~ 510 (532)
+|+.+|++||.|.+|.+++. ...|.+||+|.+.+++++|..+|+|+.|+||+|.++|+|.. +|.
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD-kY~ 495 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED-KYH 495 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH-Hhh
Confidence 99999999999999999865 34688999999999999999999999999999999999975 454
No 25
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=2.4e-19 Score=180.58 Aligned_cols=170 Identities=19% Similarity=0.307 Sum_probs=138.8
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
--|+||||.|.+.+.|+.|+..|..||+|.+ |.|..|+.|+++||||||+|.-+|.|.+|++.|||..+.
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKS--------InMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlG-- 181 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKS--------INMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG-- 181 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcce--------eecccccccccccceEEEEEeCcHHHHHHHHHhcccccc--
Confidence 4589999999999999999999999999998 999999999999999999999999999999999999994
Q ss_pred CCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHHH
Q 009565 367 GKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEAD 446 (532)
Q Consensus 367 ~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~ed 446 (532)
+ +.|+|.+...-........ ..+..... -..|||..+ .+++. .+|
T Consensus 182 G-RNiKVgrPsNmpQAQpiID------------~vqeeAk~-----------fnRiYVaSv--HpDLS---------e~D 226 (544)
T KOG0124|consen 182 G-RNIKVGRPSNMPQAQPIID------------MVQEEAKK-----------FNRIYVASV--HPDLS---------ETD 226 (544)
T ss_pred C-ccccccCCCCCcccchHHH------------HHHHHHHh-----------hheEEeeec--CCCcc---------HHH
Confidence 4 4588887653221111100 00000000 126888887 45543 349
Q ss_pred HHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEE
Q 009565 447 VQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHAS 501 (532)
Q Consensus 447 Lre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~ 501 (532)
|+..|+.||+|.+|.|-+. ..+||+||+|.+..+...||..||-..++|..|+|-
T Consensus 227 iKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVG 285 (544)
T KOG0124|consen 227 IKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 285 (544)
T ss_pred HHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecc
Confidence 9999999999999999875 568999999999999999999999999999999983
No 26
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=6.4e-19 Score=177.54 Aligned_cols=204 Identities=22% Similarity=0.373 Sum_probs=146.3
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
+...+|||..+.++.++++|+.+|+.||.|.. |+|.+++..+.+||||||+|.+..+...||..||-..|
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~--------C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDL-- 277 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVK--------CQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDL-- 277 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceee--------EEeeccCCCCCccceeeEEeccccchHHHhhhcchhhc--
Confidence 45688999999999999999999999999996 99999998889999999999999999999999887777
Q ss_pred CCCeeEEEeccccccc-----------------------------------------ch---------------------
Q 009565 366 DGKIPMSVTQAKFEQK-----------------------------------------GE--------------------- 383 (532)
Q Consensus 366 G~~~~I~V~~A~~~~k-----------------------------------------g~--------------------- 383 (532)
|+. -|+|.++-.... |.
T Consensus 278 GGQ-yLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~ 356 (544)
T KOG0124|consen 278 GGQ-YLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAV 356 (544)
T ss_pred ccc-eEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccc
Confidence 332 355543211000 00
Q ss_pred ------------hh-------------------hhh----hhchHHHHhHHHHHhh-----------hhcCCCCCC----
Q 009565 384 ------------RF-------------------IAK----QVDSKKKKKLKKVEEK-----------MLGWGGRDD---- 413 (532)
Q Consensus 384 ------------~~-------------------~~~----~~~~~~~~k~~k~~~k-----------~~~~~~~~~---- 413 (532)
.. ... ...+++.+....++.+ -.+..+++.
T Consensus 357 ~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlv 436 (544)
T KOG0124|consen 357 MAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLV 436 (544)
T ss_pred hhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHH
Confidence 00 000 0000010101111111 011112111
Q ss_pred ----CCCCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCc--------EEEEEeCCHHHH
Q 009565 414 ----AKLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQG--------VVLVRFKDRKDA 481 (532)
Q Consensus 414 ----~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG--------~aFV~F~s~eeA 481 (532)
-+...+++++++||.+|.++. ++++.+|+++|+|||.|.+|.|+.....+ -.||+|....++
T Consensus 437 MqkLmR~~~S~VivLRNMV~P~DiD------e~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~ 510 (544)
T KOG0124|consen 437 MQKLMRKQESTVIVLRNMVDPKDID------EDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASET 510 (544)
T ss_pred HHHHhccccCcEEEEeccCChhhhh------hHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHH
Confidence 122346689999999988873 34778999999999999999998654333 379999999999
Q ss_pred HHHHHHHCCcEeCCeEEEEEeecCC
Q 009565 482 QKCIELMNGRWFGGRQIHASEDDGL 506 (532)
Q Consensus 482 ~kAi~~LnGr~f~GR~I~V~~~dg~ 506 (532)
.+|+++|+||+|+||++.+..||-.
T Consensus 511 ~rak~ALdGRfFgGr~VvAE~YDQ~ 535 (544)
T KOG0124|consen 511 HRAKQALDGRFFGGRKVVAEVYDQE 535 (544)
T ss_pred HHHHHhhccceecCceeehhhhhhh
Confidence 9999999999999999999998854
No 27
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.77 E-value=1.3e-18 Score=171.48 Aligned_cols=150 Identities=17% Similarity=0.316 Sum_probs=130.1
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCCC
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~~ 368 (532)
.+|||+|||..+++.+|+.||++||.|.+ |.|+++ ||||..++...+.-||+-|+|..|. |
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlE--------CDIvKN--------YgFVHiEdktaaedairNLhgYtLh-g-- 63 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLE--------CDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLH-G-- 63 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEe--------eeeecc--------cceEEeecccccHHHHhhcccceec-c--
Confidence 46999999999999999999999999998 999987 9999999999999999999999997 5
Q ss_pred eeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHHHHH
Q 009565 369 IPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEADVQ 448 (532)
Q Consensus 369 ~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLr 448 (532)
..|+|..++... ..+++++|.|+. +.... .+|+
T Consensus 64 ~nInVeaSksKs------------------------------------k~stkl~vgNis--~tctn---------~ElR 96 (346)
T KOG0109|consen 64 VNINVEASKSKS------------------------------------KASTKLHVGNIS--PTCTN---------QELR 96 (346)
T ss_pred eEEEEEeccccC------------------------------------CCccccccCCCC--ccccC---------HHHh
Confidence 668887776321 123578899982 22222 3789
Q ss_pred HHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCCcc
Q 009565 449 EECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLVN 508 (532)
Q Consensus 449 e~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~~~ 508 (532)
..|++||+|..+.|.+ +++||+|.-.++|..||..|||+.|.|++++|.+...+..
T Consensus 97 a~fe~ygpviecdivk----dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 97 AKFEKYGPVIECDIVK----DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 152 (346)
T ss_pred hhhcccCCceeeeeec----ceeEEEEeeccchHHHHhcccccccccceeeeeeeccccc
Confidence 9999999999999987 7999999999999999999999999999999999877643
No 28
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=1.2e-16 Score=168.12 Aligned_cols=149 Identities=22% Similarity=0.374 Sum_probs=126.7
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCCC
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~~ 368 (532)
..|||| +++|+..|.++|+++|+|.+ |++.+|. | +-|||||.|.++.+|.+||..||...|. |
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s--------~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~-~-- 64 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLS--------IRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLK-G-- 64 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCcee--------EEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccC-C--
Confidence 358999 89999999999999999998 9999995 4 9999999999999999999999999998 6
Q ss_pred eeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHHHHH
Q 009565 369 IPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEADVQ 448 (532)
Q Consensus 369 ~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLr 448 (532)
++|++-...- .+..|+|.|| ++.+ ++ .+|.
T Consensus 65 ~~~rim~s~r---------------------------------------d~~~~~i~nl--~~~~-~~--------~~~~ 94 (369)
T KOG0123|consen 65 KPIRIMWSQR---------------------------------------DPSLVFIKNL--DESI-DN--------KSLY 94 (369)
T ss_pred cEEEeehhcc---------------------------------------CCceeeecCC--Cccc-Cc--------HHHH
Confidence 5566644431 0123999999 4443 33 2677
Q ss_pred HHhhccCCeeEEEEecc--CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecC
Q 009565 449 EECVKIGPVDSVKVCEN--HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDG 505 (532)
Q Consensus 449 e~fskfG~V~~V~l~~~--~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg 505 (532)
+.|+.||.|.+|+|..+ -++|+ ||+|.+.++|.+||..|||..+.|+.|.|...-.
T Consensus 95 d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 95 DTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred HHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 99999999999999876 46899 9999999999999999999999999999966544
No 29
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.70 E-value=8.1e-17 Score=174.43 Aligned_cols=171 Identities=21% Similarity=0.326 Sum_probs=134.1
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCC---CCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKET---GMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~t---G~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
|+|||.||++++|.+.|..+|.+.|.|.+ |.|.+.+.. -.+.|||||+|.++++|..|++.|+|+.|.
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS--------~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvld- 586 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLS--------IEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLD- 586 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEE--------EEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceec-
Confidence 55999999999999999999999999997 766654321 135699999999999999999999999998
Q ss_pred CCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHH
Q 009565 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEA 445 (532)
Q Consensus 366 G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~e 445 (532)
|+ .|.|..+.....+.. .++. ......+.|+|+|+ |.. ....
T Consensus 587 GH--~l~lk~S~~k~~~~~--gK~~-----------------------~~kk~~tKIlVRNi--pFe---------At~r 628 (725)
T KOG0110|consen 587 GH--KLELKISENKPASTV--GKKK-----------------------SKKKKGTKILVRNI--PFE---------ATKR 628 (725)
T ss_pred Cc--eEEEEeccCcccccc--cccc-----------------------ccccccceeeeecc--chH---------HHHH
Confidence 64 466666552111110 0000 00001347999999 443 3567
Q ss_pred HHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCC
Q 009565 446 DVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGL 506 (532)
Q Consensus 446 dLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~ 506 (532)
+|+.+|..||.|.+|+|+.. -++|||||.|-++.+|.+|+.+|.++.|.||+|.+.|+..-
T Consensus 629 EVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 629 EVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred HHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccc
Confidence 99999999999999999865 45899999999999999999999999999999999887654
No 30
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=3.4e-16 Score=152.70 Aligned_cols=200 Identities=18% Similarity=0.251 Sum_probs=147.3
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+-|...-+|++++.+|..||.|.+ |.+.+.+ .|.+||+|||.|.+.-+|..||..|+|..-.+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e--------~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpG 88 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEE--------CTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPG 88 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcce--------eEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCC
Confidence 4578999999999999999999999999998 9999984 799999999999999999999999999998888
Q ss_pred CCeeEEEecccccccchhh-----------------------hhhh-----------hc------h---HHHHhHHHHHh
Q 009565 367 GKIPMSVTQAKFEQKGERF-----------------------IAKQ-----------VD------S---KKKKKLKKVEE 403 (532)
Q Consensus 367 ~~~~I~V~~A~~~~kg~~~-----------------------~~~~-----------~~------~---~~~~k~~k~~~ 403 (532)
-...|.|.++...+..... ...+ .. . .....+..+..
T Consensus 89 ASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA 168 (371)
T KOG0146|consen 89 ASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAA 168 (371)
T ss_pred CccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHH
Confidence 8778888888754321100 0000 00 0 00000000000
Q ss_pred ---------hh--------------------------hcCCCCCC-----------------------------------
Q 009565 404 ---------KM--------------------------LGWGGRDD----------------------------------- 413 (532)
Q Consensus 404 ---------k~--------------------------~~~~~~~~----------------------------------- 413 (532)
.+ .++.+...
T Consensus 169 ~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~ 248 (371)
T KOG0146|consen 169 LNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYA 248 (371)
T ss_pred HhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhh
Confidence 00 00000000
Q ss_pred -------------------------------CCCCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEE
Q 009565 414 -------------------------------AKLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKV 462 (532)
Q Consensus 414 -------------------------------~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l 462 (532)
......++|||.+| |.++.+- +|.+.|-.||.|.+.+|
T Consensus 249 g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHL--PQEFgDa---------EliQmF~PFGhivSaKV 317 (371)
T KOG0146|consen 249 GVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHL--PQEFGDA---------ELIQMFLPFGHIVSAKV 317 (371)
T ss_pred hHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeC--chhhccH---------HHHHHhccccceeeeee
Confidence 00113458999999 7777543 55699999999999998
Q ss_pred ecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCC
Q 009565 463 CEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGL 506 (532)
Q Consensus 463 ~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~ 506 (532)
+-+ .++.|+||.|+++.+|+.||.+|||..++-++|+|.+...+
T Consensus 318 FvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPk 365 (371)
T KOG0146|consen 318 FVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPK 365 (371)
T ss_pred eehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcc
Confidence 844 68999999999999999999999999999999999987776
No 31
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=3.2e-16 Score=161.38 Aligned_cols=84 Identities=26% Similarity=0.380 Sum_probs=78.4
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+-|+..+||.+++++|++||.|.. |.|++| ..|.+||||||+|.+.+.|..||+.|||..-..|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied--------~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeG 193 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIED--------CYILRD-PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEG 193 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccch--------hhheec-ccccccceeEEEEehHHHHHHHHHhhccceeecc
Confidence 3578999999999999999999999999997 999999 5899999999999999999999999999987779
Q ss_pred CCeeEEEeccccc
Q 009565 367 GKIPMSVTQAKFE 379 (532)
Q Consensus 367 ~~~~I~V~~A~~~ 379 (532)
+..+|.|.+|..+
T Consensus 194 cs~PLVVkFADtq 206 (510)
T KOG0144|consen 194 CSQPLVVKFADTQ 206 (510)
T ss_pred CCCceEEEecccC
Confidence 9999999998754
No 32
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=5.1e-16 Score=163.42 Aligned_cols=165 Identities=22% Similarity=0.369 Sum_probs=131.4
Q ss_pred EEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCCCe
Q 009565 290 HVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKI 369 (532)
Q Consensus 290 ~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~~~ 369 (532)
.|||.||+++++...|.++|+.||.|.+ |++.++ ..| ++|| ||+|.++++|.+||..|||..+. | .
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS--------~kv~~~-~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~-~--k 143 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILS--------CKVATD-ENG-SKGY-FVQFESEESAKKAIEKLNGMLLN-G--K 143 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeE--------EEEEEc-CCC-ceee-EEEeCCHHHHHHHHHHhcCcccC-C--C
Confidence 3999999999999999999999999998 999999 567 9999 99999999999999999999997 5 5
Q ss_pred eEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHHHHHH
Q 009565 370 PMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEADVQE 449 (532)
Q Consensus 370 ~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre 449 (532)
.|.|............. .. ....-+.+++.|. +.+. ..+.|..
T Consensus 144 ki~vg~~~~~~er~~~~--~~------------------------~~~~~t~v~vk~~--~~~~---------~~~~l~~ 186 (369)
T KOG0123|consen 144 KIYVGLFERKEEREAPL--GE------------------------YKKRFTNVYVKNL--EEDS---------TDEELKD 186 (369)
T ss_pred eeEEeeccchhhhcccc--cc------------------------hhhhhhhhheecc--cccc---------chHHHHH
Confidence 57777665322111100 00 0001135667776 2221 2347889
Q ss_pred HhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecC
Q 009565 450 ECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDG 505 (532)
Q Consensus 450 ~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg 505 (532)
.|..||.|.++.++.+ +++||+||.|.++++|..|+..|||..+++..+.|.-+-.
T Consensus 187 ~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 187 LFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred hhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeeccccc
Confidence 9999999999999975 6789999999999999999999999999999988865544
No 33
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.60 E-value=1.2e-15 Score=161.54 Aligned_cols=179 Identities=22% Similarity=0.335 Sum_probs=141.4
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
+..++||+-.|+..++..+|.++|+.+|.|.. |+|+.|+.++.+||.|||+|.+.+++..|| .|.|..+.
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrd--------VriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrll- 246 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRD--------VRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLL- 246 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcce--------eEeeccccchhhcceeEEEEecccchhhHh-hhcCCccc-
Confidence 45688999999999999999999999999997 999999999999999999999999999999 79999986
Q ss_pred CCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcE-EEEecccCCcccCcchhhHHHHH
Q 009565 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPAT-VILRFMFTPAEMRADENLRSELE 444 (532)
Q Consensus 366 G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~-v~i~Nlf~p~~~~~D~~l~~ei~ 444 (532)
| .+|.|+...-.... . .....|-. ......|-. ++++|| ...++ .
T Consensus 247 g--~pv~vq~sEaeknr---------------~----a~~s~a~~--~k~~~~p~~rl~vgnL--HfNit---------e 292 (549)
T KOG0147|consen 247 G--VPVIVQLSEAEKNR---------------A----ANASPALQ--GKGFTGPMRRLYVGNL--HFNIT---------E 292 (549)
T ss_pred C--ceeEecccHHHHHH---------------H----Hhcccccc--ccccccchhhhhhccc--ccCch---------H
Confidence 5 67777665421100 0 00111111 001111212 899999 33332 2
Q ss_pred HHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCCcc
Q 009565 445 ADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLVN 508 (532)
Q Consensus 445 edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~~~ 508 (532)
.+|+..|+.||.|..|.+..+ .++||+||+|.+.++|.+|+..|||..+.||.|+|.....+++
T Consensus 293 ~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 293 DMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred HHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecc
Confidence 489999999999999999865 6899999999999999999999999999999999998766543
No 34
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=6.6e-15 Score=144.17 Aligned_cols=134 Identities=25% Similarity=0.419 Sum_probs=101.9
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+||..++||+-|..||+..|.|.. ++|+.| +
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~--------~k~i~~------------------------------e--- 42 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTK--------TKVIFD------------------------------E--- 42 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhcccccc--------ceeehh------------------------------h---
Confidence 35589999999999999999999999999996 888876 1
Q ss_pred CCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCC--cEEEEecccCCcccCcchhhHHHH
Q 009565 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIP--ATVILRFMFTPAEMRADENLRSEL 443 (532)
Q Consensus 366 G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~--~~v~i~Nlf~p~~~~~D~~l~~ei 443 (532)
|+|..+.-. +.. .++... -.|+|.-| ..++ -
T Consensus 43 -----~~v~wa~~p--~nQ-----------------------------sk~t~~~hfhvfvgdl--s~eI---------~ 75 (321)
T KOG0148|consen 43 -----LKVNWATAP--GNQ-----------------------------SKPTSNQHFHVFVGDL--SPEI---------D 75 (321)
T ss_pred -----hccccccCc--ccC-----------------------------CCCccccceeEEehhc--chhc---------c
Confidence 122222210 000 000011 13555555 2222 1
Q ss_pred HHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCCc
Q 009565 444 EADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLV 507 (532)
Q Consensus 444 ~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~~ 507 (532)
.++||+.|.+||.|..++|+++ +++||+||.|-+.++|+.||..|||.|+++|.|+..++.-|.
T Consensus 76 ~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 76 NEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred hHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 2689999999999999999987 789999999999999999999999999999999998887663
No 35
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=99.56 E-value=2.3e-15 Score=111.39 Aligned_cols=45 Identities=40% Similarity=0.872 Sum_probs=42.9
Q ss_pred ceEEEcCCCcccCCCCHHHHHHHHHcCcccCCccccccCccCcccC
Q 009565 25 GWYILDENQQHVGPYAISELCEHFLNGYLLETTLVWSQGRSEWQPL 70 (532)
Q Consensus 25 ~Wyy~~~~~~~~GP~~~~~l~~~~~~g~i~~~tlvW~~Gm~~W~p~ 70 (532)
.|||.. ||+++|||++++|++||++|.|+++||||++||++|+||
T Consensus 1 ~Wy~~~-~g~~~GP~s~~el~~l~~~g~i~~~tlvw~~g~~~W~pl 45 (45)
T PF14237_consen 1 EWYYAR-NGQQQGPFSLEELRQLISSGEIDPDTLVWKEGMSDWKPL 45 (45)
T ss_pred CEEEeC-CCeEECCcCHHHHHHHHHcCCCCCCCeEeCCChhhceEC
Confidence 489976 999999999999999999999999999999999999997
No 36
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.56 E-value=1.9e-14 Score=132.78 Aligned_cols=80 Identities=24% Similarity=0.419 Sum_probs=74.7
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+|||+++|+++|+++|++||.|.. |+|++|+.+++++|||||+|.+.++|+.||..|||..|. |
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~-G 103 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVD--------AKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN-G 103 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEE--------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC-C
Confidence 4688999999999999999999999999997 999999999999999999999999999999999999996 5
Q ss_pred CCeeEEEeccc
Q 009565 367 GKIPMSVTQAK 377 (532)
Q Consensus 367 ~~~~I~V~~A~ 377 (532)
++|+|..+.
T Consensus 104 --r~l~V~~a~ 112 (144)
T PLN03134 104 --RHIRVNPAN 112 (144)
T ss_pred --EEEEEEeCC
Confidence 678888775
No 37
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.53 E-value=1.3e-13 Score=132.75 Aligned_cols=194 Identities=17% Similarity=0.297 Sum_probs=130.4
Q ss_pred CCCCcEEEEECCCCCCCHHHHHH----HHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCC
Q 009565 285 LKVNTHVYVTGLPDDVTVEEMVE----VFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDG 360 (532)
Q Consensus 285 ~~~~~~VyV~nLP~~vTeeeL~e----lFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG 360 (532)
+..|.+|||.||+..+..++|+. +|+.||.|.. |... .+.+.+|-|||.|.+.++|..|++.|+|
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ild--------I~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~g 74 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILD--------ISAF---KTPKMRGQAFVVFKETEAASAALRALQG 74 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEE--------EEec---CCCCccCceEEEecChhHHHHHHHHhcC
Confidence 35667999999999999999988 9999999985 6555 3689999999999999999999999999
Q ss_pred ceecCCCCeeEEEecccccccch-----hhhhhhhc--hHHHHhHH-HH-Hhhhh---cCCCCC----CCCCCCCcEEEE
Q 009565 361 TPFRPDGKIPMSVTQAKFEQKGE-----RFIAKQVD--SKKKKKLK-KV-EEKML---GWGGRD----DAKLTIPATVIL 424 (532)
Q Consensus 361 ~~l~~G~~~~I~V~~A~~~~kg~-----~~~~~~~~--~~~~~k~~-k~-~~k~~---~~~~~~----~~~~~~~~~v~i 424 (532)
..+. | .+|++++|+....-. ....+... .....+.. .. .+... .-.... ........++++
T Consensus 75 fpFy-g--K~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~ 151 (221)
T KOG4206|consen 75 FPFY-G--KPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFL 151 (221)
T ss_pred Cccc-C--chhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEE
Confidence 9998 6 679999998543211 11111100 00000000 00 00000 000000 111223347778
Q ss_pred ecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeC-CeEEEEEee
Q 009565 425 RFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFG-GRQIHASED 503 (532)
Q Consensus 425 ~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~-GR~I~V~~~ 503 (532)
.|+ |.+.. .+-+..+|..|.....|+++... .|+|||+|.+...|..|...|.|..+- ..++.+.++
T Consensus 152 ~ni--P~es~---------~e~l~~lf~qf~g~keir~i~~~-~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 152 TNI--PSESE---------SEMLSDLFEQFPGFKEIRLIPPR-SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred ecC--Ccchh---------HHHHHHHHhhCcccceeEeccCC-CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 888 44431 12444566666777777777643 389999999999999999999998876 888888765
Q ss_pred c
Q 009565 504 D 504 (532)
Q Consensus 504 d 504 (532)
+
T Consensus 220 ~ 220 (221)
T KOG4206|consen 220 K 220 (221)
T ss_pred C
Confidence 3
No 38
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.49 E-value=6.5e-14 Score=143.39 Aligned_cols=168 Identities=17% Similarity=0.263 Sum_probs=131.0
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||++|++++|++.|++.|++||.|.. +.+++|+.+++++||+||+|.+.+.+..+|..-. ..|. |
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d--------~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~-h~~d-g 74 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTD--------CVVMRDPSTGRSRGFGFVTFATPEGVDAVLNART-HKLD-G 74 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceee--------EEEeccCCCCCcccccceecCCCcchheeecccc-cccC-C
Confidence 4588999999999999999999999999997 9999999999999999999999999999885322 2232 3
Q ss_pred CCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHHH
Q 009565 367 GKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEAD 446 (532)
Q Consensus 367 ~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~ed 446 (532)
+.|.+.+|........ .........|+|..+ +..+ .+++
T Consensus 75 --r~ve~k~av~r~~~~~----------------------------~~~~~~tkkiFvGG~--~~~~---------~e~~ 113 (311)
T KOG4205|consen 75 --RSVEPKRAVSREDQTK----------------------------VGRHLRTKKIFVGGL--PPDT---------TEED 113 (311)
T ss_pred --ccccceeccCcccccc----------------------------cccccceeEEEecCc--CCCC---------chHH
Confidence 3455555542211110 001112347888887 4443 3458
Q ss_pred HHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCC
Q 009565 447 VQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGL 506 (532)
Q Consensus 447 Lre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~ 506 (532)
+++.|.+||.|..+.++.+ .++||+||.|.+.+...+++. ..-+.|.|+.+.|..+-.+
T Consensus 114 ~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk 176 (311)
T KOG4205|consen 114 FKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPK 176 (311)
T ss_pred HhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccch
Confidence 9999999999988888754 689999999999999999886 5889999999999887665
No 39
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.46 E-value=1.4e-13 Score=144.09 Aligned_cols=82 Identities=32% Similarity=0.455 Sum_probs=76.1
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCC
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~ 367 (532)
.++|||+|||.++|+++|+++|++||.|.. |+|++|+.+|+++|||||+|.+.++|.+||+.||+..|. |+
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~--------v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~-g~ 263 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQ--------KNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPE-GG 263 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEE--------EEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccC-CC
Confidence 478999999999999999999999999996 999999889999999999999999999999999999987 66
Q ss_pred CeeEEEecccc
Q 009565 368 KIPMSVTQAKF 378 (532)
Q Consensus 368 ~~~I~V~~A~~ 378 (532)
.++|.|..+.-
T Consensus 264 ~~~l~V~~a~~ 274 (346)
T TIGR01659 264 SQPLTVRLAEE 274 (346)
T ss_pred ceeEEEEECCc
Confidence 67899988764
No 40
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.45 E-value=4e-13 Score=106.54 Aligned_cols=65 Identities=37% Similarity=0.575 Sum_probs=62.5
Q ss_pred EEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 291 VYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 291 VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
|||+|||+++|+++|+++|++||.|.. +.+..+ .++.++|+|||+|.+.++|..|+..|||..+.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~--------~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~ 65 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIES--------IKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKIN 65 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEE--------EEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccc--------cccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEEC
Confidence 799999999999999999999999986 999998 68999999999999999999999999999996
No 41
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.44 E-value=3.3e-13 Score=140.81 Aligned_cols=81 Identities=21% Similarity=0.281 Sum_probs=74.9
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
...+|||+|||+++++++|+++|++||.|.+ ++|++|+.+|.+||||||+|.+.++|..||..|||..|. |
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~--------v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~-g 338 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQN--------VKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLG-N 338 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEE--------EEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEEC-C
Confidence 3457999999999999999999999999996 999999889999999999999999999999999999996 5
Q ss_pred CCeeEEEecccc
Q 009565 367 GKIPMSVTQAKF 378 (532)
Q Consensus 367 ~~~~I~V~~A~~ 378 (532)
++|+|.+...
T Consensus 339 --r~i~V~~~~~ 348 (352)
T TIGR01661 339 --RVLQVSFKTN 348 (352)
T ss_pred --eEEEEEEccC
Confidence 6799988764
No 42
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.42 E-value=9.9e-14 Score=129.19 Aligned_cols=140 Identities=21% Similarity=0.327 Sum_probs=116.3
Q ss_pred ccccccCCCccccCCCCccccccccccccCCcccccccccccccccccccchhhhcccccchhccccCCcCCCCcchhhh
Q 009565 193 RAWVPQEDTSSQNDGYGIEEMTFLKEEEVFPTVNVTDDLANDEVGKEKLNSTEEKVNSADNVVEEKHNGKRKQPDKQVEK 272 (532)
Q Consensus 193 ~~w~p~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~krk~~~~~~~~~~~~~~~e~~~~~k~k~~~~~~~k 272 (532)
+-.+|+|.....|++|||.+ |..+|++.++.++.+..+...++-|-.+.+.
T Consensus 38 ~i~iPkDrv~~~~qGygF~E--f~~eedadYAikiln~VkLYgrpIrv~kas~--------------------------- 88 (203)
T KOG0131|consen 38 NLHIPKDRVTQKHQGYGFAE--FRTEEDADYAIKILNMVKLYGRPIRVNKASA--------------------------- 88 (203)
T ss_pred eeecchhhhcccccceeEEE--EechhhhHHHHHHHHHHHhcCceeEEEeccc---------------------------
Confidence 34889999988999999988 9999999999999988877776644432200
Q ss_pred hhcCCCCCCcccCCCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHH
Q 009565 273 KEANKPPDSWFELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVA 352 (532)
Q Consensus 273 k~~~~~~~~~~~~~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~ 352 (532)
. . ..+..+.+|||+||.+.+.+..|.++|+.||+|... -+|++++.||+++|||||.|.+.+.+.
T Consensus 89 ~---~-----~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~-------P~i~rd~~tg~~~~~g~i~~~sfeasd 153 (203)
T KOG0131|consen 89 H---Q-----KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISP-------PKIMRDPDTGNPKGFGFINYASFEASD 153 (203)
T ss_pred c---c-----ccccccccccccccCcchhHHHHHHHHHhccccccC-------CcccccccCCCCCCCeEEechhHHHHH
Confidence 0 0 012556889999999999999999999999999862 478899899999999999999999999
Q ss_pred HHHHHhCCceecCCCCeeEEEeccccc
Q 009565 353 LATQLLDGTPFRPDGKIPMSVTQAKFE 379 (532)
Q Consensus 353 ~Al~~LnG~~l~~G~~~~I~V~~A~~~ 379 (532)
+||..|||+.+. .++|.|..+...
T Consensus 154 ~ai~s~ngq~l~---nr~itv~ya~k~ 177 (203)
T KOG0131|consen 154 AAIGSMNGQYLC---NRPITVSYAFKK 177 (203)
T ss_pred HHHHHhccchhc---CCceEEEEEEec
Confidence 999999999994 367999988643
No 43
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=8.4e-12 Score=116.53 Aligned_cols=169 Identities=19% Similarity=0.244 Sum_probs=121.4
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+|||.+|-+.+|.++|.|||.|.. |.|..- -...+||||+|.++-+|+-||..-||..+. |
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~--------ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdyd-g 72 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIRE--------IELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYD-G 72 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEE--------EEeccC---CCCCCeeEEEecCccchhhhhhcccccccC-c
Confidence 4588999999999999999999999999996 776432 345689999999999999999999999997 6
Q ss_pred CCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCC---CCCCCcEEEEecccCCcccCcchhhHHHH
Q 009565 367 GKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDA---KLTIPATVILRFMFTPAEMRADENLRSEL 443 (532)
Q Consensus 367 ~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~---~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei 443 (532)
++|+|+.+.-......-.- .... ..--+|++.... ...+.-.|+|..| |+. -.|
T Consensus 73 --~rLRVEfprggr~s~~~~G-~y~g----------ggrgGgg~gg~rgppsrrSe~RVvVsGL--p~S----gSW---- 129 (241)
T KOG0105|consen 73 --CRLRVEFPRGGRSSSDRRG-SYSG----------GGRGGGGGGGRRGPPSRRSEYRVVVSGL--PPS----GSW---- 129 (241)
T ss_pred --ceEEEEeccCCCccccccc-ccCC----------CCCCCCCCCcccCCcccccceeEEEecC--CCC----Cch----
Confidence 5689988864321110000 0000 000012211111 1112337888998 432 123
Q ss_pred HHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeC
Q 009565 444 EADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFG 494 (532)
Q Consensus 444 ~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~ 494 (532)
+||+++..+-|.|-...+.++ |++.|.|...++..=||..|....|.
T Consensus 130 -QDLKDHmReaGdvCfadv~rD---g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 130 -QDLKDHMREAGDVCFADVQRD---GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred -HHHHHHHHhhCCeeeeeeecc---cceeeeeeehhhHHHHHHhhcccccc
Confidence 488888889999988888775 79999999999999999999987774
No 44
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.33 E-value=1.6e-11 Score=119.76 Aligned_cols=79 Identities=35% Similarity=0.585 Sum_probs=73.7
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCC
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~ 367 (532)
.++|||+|||+++|+++|+++|.+||.|.. |.|..++.+|.++|||||+|.+.+++..|+..|+|..|. |
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~--------~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~-~- 184 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKR--------VRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELE-G- 184 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeE--------EEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeEC-C-
Confidence 589999999999999999999999999985 999999889999999999999999999999999999997 5
Q ss_pred CeeEEEeccc
Q 009565 368 KIPMSVTQAK 377 (532)
Q Consensus 368 ~~~I~V~~A~ 377 (532)
++|.|..+.
T Consensus 185 -~~~~v~~~~ 193 (306)
T COG0724 185 -RPLRVQKAQ 193 (306)
T ss_pred -ceeEeeccc
Confidence 568888865
No 45
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=7.1e-12 Score=136.50 Aligned_cols=190 Identities=17% Similarity=0.260 Sum_probs=128.0
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..+.|+|+|||..+..++|..+|..||.|.. |.|. + .|. .++|.|.++.+|..|.+.|..+.+..
T Consensus 384 s~~vil~kNlpa~t~~~elt~~F~~fG~i~r--------vllp--~-~G~---~aiv~fl~p~eAr~Afrklaysr~k~- 448 (725)
T KOG0110|consen 384 SDTVILVKNLPAGTLSEELTEAFLRFGEIGR--------VLLP--P-GGT---GAIVEFLNPLEARKAFRKLAYSRFKS- 448 (725)
T ss_pred hcceeeeccCccccccHHHHHHhhcccccce--------eecC--c-ccc---eeeeeecCccchHHHHHHhchhhhcc-
Confidence 4588999999999999999999999999984 6443 2 233 49999999999999999999988862
Q ss_pred CCeeEEEecccccccc-----hhhhhhhhch---HHHHhHHHHHhhhhcCCCC--CC------CCCCCCcEEEEecccCC
Q 009565 367 GKIPMSVTQAKFEQKG-----ERFIAKQVDS---KKKKKLKKVEEKMLGWGGR--DD------AKLTIPATVILRFMFTP 430 (532)
Q Consensus 367 ~~~~I~V~~A~~~~kg-----~~~~~~~~~~---~~~~k~~k~~~k~~~~~~~--~~------~~~~~~~~v~i~Nlf~p 430 (532)
.++++..+.-.-.. .......... ....+....+..+..-.+. .. .....++.+|++|+ +
T Consensus 449 --~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNl--n 524 (725)
T KOG0110|consen 449 --APLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNL--N 524 (725)
T ss_pred --CccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcC--C
Confidence 45666655432211 1000000000 0000000000000000000 00 01112234888888 1
Q ss_pred cccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc-------CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEee
Q 009565 431 AEMRADENLRSELEADVQEECVKIGPVDSVKVCEN-------HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASED 503 (532)
Q Consensus 431 ~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~-------~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~ 503 (532)
. .+..+++..+|.++|.|.++.|... .+.|||||+|.++++|++|++.|+|+.++|+.|.|.+.
T Consensus 525 f---------~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 525 F---------DTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred c---------ccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 1 2345689999999999999988754 23499999999999999999999999999999999998
Q ss_pred c
Q 009565 504 D 504 (532)
Q Consensus 504 d 504 (532)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 8
No 46
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.31 E-value=8.8e-12 Score=99.77 Aligned_cols=65 Identities=29% Similarity=0.583 Sum_probs=59.9
Q ss_pred EEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 291 VYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 291 VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
|||+|||+++|+++|+++|+.||.|.. +++..++. |.++|+|||+|.+.++|..|+..++|..+.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~--------v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~ 65 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEK--------VRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEID 65 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEE--------EEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcce--------EEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEEC
Confidence 799999999999999999999999985 99999965 999999999999999999999999999996
No 47
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=2.2e-13 Score=126.74 Aligned_cols=86 Identities=33% Similarity=0.522 Sum_probs=78.0
Q ss_pred CCcccC-CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHh
Q 009565 280 DSWFEL-KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLL 358 (532)
Q Consensus 280 ~~~~~~-~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~L 358 (532)
.+|... +.+.-|||||||++.||.+|.-+|++||.|+. |.|++|+.||+++||||++|.+..|.-+|+.-|
T Consensus 26 ~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vd--------inLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~ 97 (219)
T KOG0126|consen 26 KSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVD--------INLIRDKKTGKSKGFAFLCYEDQRSTILAVDNL 97 (219)
T ss_pred cchhhhcccceEEEECCCcccccCCcEEEEeeccCceEE--------EEEEecCCCCcccceEEEEecCccceEEEEecc
Confidence 367644 67788999999999999999999999999997 999999999999999999999999999999999
Q ss_pred CCceecCCCCeeEEEecc
Q 009565 359 DGTPFRPDGKIPMSVTQA 376 (532)
Q Consensus 359 nG~~l~~G~~~~I~V~~A 376 (532)
||..|. | +.|+|...
T Consensus 98 NGiki~-g--RtirVDHv 112 (219)
T KOG0126|consen 98 NGIKIL-G--RTIRVDHV 112 (219)
T ss_pred CCceec-c--eeEEeeec
Confidence 999997 5 56777654
No 48
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=3.9e-12 Score=123.45 Aligned_cols=166 Identities=19% Similarity=0.312 Sum_probs=120.3
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCCC
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~~ 368 (532)
..|||++||+.+.+.+|..||..||.|.. |.|. .||+||.|.+..+|.-||.-|||..|. |.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d--------~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~-~e- 63 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPD--------ADMK--------NGFGFVEFEDPRDADDAVHDLDGKELC-GE- 63 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccc--------ceee--------cccceeccCchhhhhcccchhcCceec-ce-
Confidence 46999999999999999999999999985 5543 479999999999999999999999996 43
Q ss_pred eeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHHHHH
Q 009565 369 IPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEADVQ 448 (532)
Q Consensus 369 ~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLr 448 (532)
. +.|..+........ .... .. .. .|...-.......+.+++.|+ .. .....+|.
T Consensus 64 ~-~vve~~r~~~~~~g--~~~~-g~-r~----------~~~~~~~~p~~s~~r~~~~~~--~~---------r~~~qdl~ 117 (216)
T KOG0106|consen 64 R-LVVEHARGKRRGRG--RPRG-GD-RR----------SDSRRYRPPSRTHFRLIVRNL--SL---------RVSWQDLK 117 (216)
T ss_pred e-eeeecccccccccC--CCCC-CC-cc----------chhhccCCcccccceeeeccc--hh---------hhhHHHHh
Confidence 3 77777763221110 0000 00 00 011111111223446667776 11 12346999
Q ss_pred HHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEe
Q 009565 449 EECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASE 502 (532)
Q Consensus 449 e~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~ 502 (532)
..|+++|.+..+.+ ..+++||+|.+.++|.+|+..|+|..+.|+.|++.+
T Consensus 118 d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 118 DHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred hhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 99999999966655 347999999999999999999999999999999933
No 49
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=4e-12 Score=122.91 Aligned_cols=80 Identities=26% Similarity=0.358 Sum_probs=68.0
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..|+|||+||++.++.+.|+++|++||.|.+ ..++.|+.+|++||||||+|.+.++|.+||+ |-..+-.|
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~e--------avvitd~~t~rskGyGfVTf~d~~aa~rAc~--dp~piIdG 80 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVE--------AVVITDKNTGRSKGYGFVTFRDAEAATRACK--DPNPIIDG 80 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEE--------EEEEeccCCccccceeeEEeecHHHHHHHhc--CCCCcccc
Confidence 5689999999999999999999999999998 9999999999999999999999999999996 33333325
Q ss_pred CCeeEEEecccc
Q 009565 367 GKIPMSVTQAKF 378 (532)
Q Consensus 367 ~~~~I~V~~A~~ 378 (532)
++..+..|.+
T Consensus 81 --R~aNcnlA~l 90 (247)
T KOG0149|consen 81 --RKANCNLASL 90 (247)
T ss_pred --cccccchhhh
Confidence 3355555554
No 50
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.29 E-value=1e-11 Score=123.48 Aligned_cols=75 Identities=24% Similarity=0.301 Sum_probs=67.5
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCC
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~ 367 (532)
.++|||+|||+.+|+++|+++|+.||.|.. |.|++++ ..+|||||+|.+.++|..|| .|||..|. |
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~--------V~I~~d~---~~~GfAFVtF~d~eaAe~Al-lLnG~~l~-g- 69 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEY--------VEMQSEN---ERSQIAYVTFKDPQGAETAL-LLSGATIV-D- 69 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeecC---CCCCEEEEEeCcHHHHHHHH-HhcCCeeC-C-
Confidence 478999999999999999999999999996 9999884 35799999999999999999 59999996 5
Q ss_pred CeeEEEeccc
Q 009565 368 KIPMSVTQAK 377 (532)
Q Consensus 368 ~~~I~V~~A~ 377 (532)
+.|.|.++.
T Consensus 70 -r~V~Vt~a~ 78 (260)
T PLN03120 70 -QSVTITPAE 78 (260)
T ss_pred -ceEEEEecc
Confidence 568888875
No 51
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.28 E-value=8.7e-11 Score=121.66 Aligned_cols=196 Identities=16% Similarity=0.268 Sum_probs=132.4
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHh-ccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFS-KCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFs-k~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
...+.|||+|||+++...+|++||. +.|.|. +|.|+.| .+|+++|+|.|+|+++|++++|++.||...+.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~--------yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~ 112 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVE--------YVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVN 112 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceE--------eeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhcccc
Confidence 4567799999999999999999998 889998 5999999 78999999999999999999999999999997
Q ss_pred CCCCeeEEEecccccccchh----------h-----------------------h--hhhhchHHHHh---HHHHHhh--
Q 009565 365 PDGKIPMSVTQAKFEQKGER----------F-----------------------I--AKQVDSKKKKK---LKKVEEK-- 404 (532)
Q Consensus 365 ~G~~~~I~V~~A~~~~kg~~----------~-----------------------~--~~~~~~~~~~k---~~k~~~k-- 404 (532)
| ++|.|....-.+...+ + . ....+.....+ ...+.+.
T Consensus 113 -G--R~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~ 189 (608)
T KOG4212|consen 113 -G--RELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYN 189 (608)
T ss_pred -C--ceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccc
Confidence 6 5677754332111000 0 0 00000000000 0000000
Q ss_pred ----hhcCCCC-------CCCCCCCCcEEEEecc-cCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc---CCCc
Q 009565 405 ----MLGWGGR-------DDAKLTIPATVILRFM-FTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN---HPQG 469 (532)
Q Consensus 405 ----~~~~~~~-------~~~~~~~~~~v~i~Nl-f~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~---~~kG 469 (532)
+.-++.. ..-.++....++|.|| |... -..|.+.|.--|.|..|.+--+ .++|
T Consensus 190 ~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg------------~~kL~qvfgmAGkv~~vdf~idKeG~s~G 257 (608)
T KOG4212|consen 190 NSSNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVG------------NKKLKQVFGMAGKVQSVDFSIDKEGNSRG 257 (608)
T ss_pred cchhhhcccchhhhhhhccCCCCCccceeeeeccccccc------------hHHHHHHhccceeeeeeceeeccccccCC
Confidence 0000000 0001122235556666 1111 1367888888899999987533 7889
Q ss_pred EEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecC
Q 009565 470 VVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDG 505 (532)
Q Consensus 470 ~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg 505 (532)
|+.|+|..+-+|-.||..|++.-+..|+..+.+..+
T Consensus 258 ~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl~~~ 293 (608)
T KOG4212|consen 258 FAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRLDRI 293 (608)
T ss_pred eeEEEecchHHHHHHHHhhccCCCccccceeecccc
Confidence 999999999999999999999888889988888544
No 52
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.3e-11 Score=119.73 Aligned_cols=81 Identities=31% Similarity=0.416 Sum_probs=74.6
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|=|+|||.++++++|.+||.+||.|.. |.|.+|+.||.+||||||.|.+.++|.+||..|||.-+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~r--------vylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd-- 257 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITR--------VYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYD-- 257 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccce--------eEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccc--
Confidence 5677999999999999999999999999995 999999999999999999999999999999999999885
Q ss_pred CCeeEEEecccc
Q 009565 367 GKIPMSVTQAKF 378 (532)
Q Consensus 367 ~~~~I~V~~A~~ 378 (532)
+ ..|+|+.++.
T Consensus 258 ~-LILrvEwskP 268 (270)
T KOG0122|consen 258 N-LILRVEWSKP 268 (270)
T ss_pred e-EEEEEEecCC
Confidence 2 5688888764
No 53
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=9.8e-12 Score=109.88 Aligned_cols=80 Identities=29% Similarity=0.416 Sum_probs=71.9
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
+..++|||+||++.+||++|.+||++||.|.. |.|=.|+.+..+=|||||+|.+.++|..|++.++|+.+.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irr--------iiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd- 104 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRR--------IIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD- 104 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchhe--------eEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc-
Confidence 34599999999999999999999999999994 888889888899999999999999999999999999996
Q ss_pred CCCeeEEEecc
Q 009565 366 DGKIPMSVTQA 376 (532)
Q Consensus 366 G~~~~I~V~~A 376 (532)
. ++|.+...
T Consensus 105 d--r~ir~D~D 113 (153)
T KOG0121|consen 105 D--RPIRIDWD 113 (153)
T ss_pred c--cceeeecc
Confidence 3 56777554
No 54
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.26 E-value=3.3e-11 Score=92.75 Aligned_cols=56 Identities=36% Similarity=0.587 Sum_probs=51.4
Q ss_pred HHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEee
Q 009565 447 VQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASED 503 (532)
Q Consensus 447 Lre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~ 503 (532)
|+++|++||.|.+|.+.+++ .|+|||+|.+.++|.+|+..|||+.|+|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 57899999999999998766 699999999999999999999999999999999874
No 55
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=2.8e-11 Score=120.36 Aligned_cols=83 Identities=28% Similarity=0.396 Sum_probs=76.3
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
+..+||||+-|+++++|..|+..|++||+|.. |+|++|+.||+++|||||+|..+-++..|.+..+|..|.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~Ikr--------irlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id- 169 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKR--------IRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID- 169 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCccee--------EEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec-
Confidence 67899999999999999999999999999995 999999999999999999999999999999999999998
Q ss_pred CCCeeEEEeccc
Q 009565 366 DGKIPMSVTQAK 377 (532)
Q Consensus 366 G~~~~I~V~~A~ 377 (532)
|..+.|.|.+..
T Consensus 170 grri~VDvERgR 181 (335)
T KOG0113|consen 170 GRRILVDVERGR 181 (335)
T ss_pred CcEEEEEecccc
Confidence 765666666554
No 56
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.24 E-value=6.4e-11 Score=121.96 Aligned_cols=191 Identities=18% Similarity=0.250 Sum_probs=128.9
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCcccc-EEEEecCHHHHHHHHHHhCCceecCCC
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGD-ALVTYLKEPSVALATQLLDGTPFRPDG 367 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~-aFV~F~~~esA~~Al~~LnG~~l~~G~ 367 (532)
-+++|.|+-+-+|-|-|+.+|++||.|.. |.-+. ++.|| |+|.|.+.++|..|...|+|..|..||
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlK--------IiTF~-----Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngc 217 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLK--------IITFT-----KNNGFQALVQYTDAVSAQAAKLALDGQNIYNGC 217 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEE--------EEEEe-----cccchhhhhhccchhhHHHHHHhccCCcccCce
Confidence 56889999999999999999999999974 43332 23455 999999999999999999999998655
Q ss_pred CeeEEEecccccccchhhhhhhhc------hHHHHhHHHHHhhhh-------cCCCC-------------CCCCCC---C
Q 009565 368 KIPMSVTQAKFEQKGERFIAKQVD------SKKKKKLKKVEEKML-------GWGGR-------------DDAKLT---I 418 (532)
Q Consensus 368 ~~~I~V~~A~~~~kg~~~~~~~~~------~~~~~k~~k~~~k~~-------~~~~~-------------~~~~~~---~ 418 (532)
+.|++.+++...-...+...+.+ .......+.+..-+. ...+. .+.+.. .
T Consensus 218 -CtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~ 296 (492)
T KOG1190|consen 218 -CTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSA 296 (492)
T ss_pred -eEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCC
Confidence 67888877642111000000000 000000000000000 00000 001111 1
Q ss_pred CcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEE
Q 009565 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQI 498 (532)
Q Consensus 419 ~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I 498 (532)
..+|.+.|+ .++..+ .+-|+.+|+-||.|.+|+|+.++. --|.|+|.+...|+-|+..|+|..+.|++|
T Consensus 297 n~vllvsnl--n~~~VT--------~d~LftlFgvYGdVqRVkil~nkk-d~ALIQmsd~~qAqLA~~hL~g~~l~gk~l 365 (492)
T KOG1190|consen 297 NVVLLVSNL--NEEAVT--------PDVLFTLFGVYGDVQRVKILYNKK-DNALIQMSDGQQAQLAMEHLEGHKLYGKKL 365 (492)
T ss_pred ceEEEEecC--chhccc--------hhHHHHHHhhhcceEEEEeeecCC-cceeeeecchhHHHHHHHHhhcceecCceE
Confidence 356777787 233322 236789999999999999998865 579999999999999999999999999999
Q ss_pred EEEeec
Q 009565 499 HASEDD 504 (532)
Q Consensus 499 ~V~~~d 504 (532)
+|.+..
T Consensus 366 rvt~SK 371 (492)
T KOG1190|consen 366 RVTLSK 371 (492)
T ss_pred EEeecc
Confidence 999864
No 57
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.23 E-value=5e-11 Score=110.02 Aligned_cols=80 Identities=20% Similarity=0.350 Sum_probs=69.5
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
.+++|+|.|| +..++ .++|+++|++||.|.+|.|+.+ +++|||||+|.+.++|++||..|||..|
T Consensus 33 ~~~~lfVgnL--~~~~t---------e~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i 101 (144)
T PLN03134 33 MSTKLFIGGL--SWGTD---------DASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL 101 (144)
T ss_pred CCCEEEEeCC--CCCCC---------HHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4568999999 55442 3589999999999999999854 6789999999999999999999999999
Q ss_pred CCeEEEEEeecCCcc
Q 009565 494 GGRQIHASEDDGLVN 508 (532)
Q Consensus 494 ~GR~I~V~~~dg~~~ 508 (532)
+|++|+|.+...+..
T Consensus 102 ~Gr~l~V~~a~~~~~ 116 (144)
T PLN03134 102 NGRHIRVNPANDRPS 116 (144)
T ss_pred CCEEEEEEeCCcCCC
Confidence 999999999876543
No 58
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=2.4e-11 Score=112.82 Aligned_cols=78 Identities=26% Similarity=0.306 Sum_probs=68.5
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..+|+|||+||+.++++.+|..+|.+||+|.+ |.|-++ +.|||||+|.++-+|+.|+..|||..|-
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrs--------vWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~c- 73 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRS--------VWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDIC- 73 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCccee--------EEEeec-----CCCceEEeccCcccHHHHHhhcCCcccc-
Confidence 35799999999999999999999999999997 888765 5899999999999999999999999997
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| ..|.|+...-.
T Consensus 74 G--~r~rVE~S~G~ 85 (195)
T KOG0107|consen 74 G--SRIRVELSTGR 85 (195)
T ss_pred C--ceEEEEeecCC
Confidence 6 45777766533
No 59
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.21 E-value=5e-11 Score=116.97 Aligned_cols=76 Identities=26% Similarity=0.366 Sum_probs=67.8
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
.+.+|||+||++.+|+++|+++|+.||.|.. |+|++| +..+|+|||+|.+++++..|| +|||..|. +
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~--------V~I~~D---~et~gfAfVtF~d~~aaetAl-lLnGa~l~-d 70 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEH--------VEIIRS---GEYACTAYVTFKDAYALETAV-LLSGATIV-D 70 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEE--------EEEecC---CCcceEEEEEECCHHHHHHHH-hcCCCeeC-C
Confidence 4578999999999999999999999999997 999988 456689999999999999999 79999996 4
Q ss_pred CCeeEEEeccc
Q 009565 367 GKIPMSVTQAK 377 (532)
Q Consensus 367 ~~~~I~V~~A~ 377 (532)
.+|.|.+..
T Consensus 71 --~~I~It~~~ 79 (243)
T PLN03121 71 --QRVCITRWG 79 (243)
T ss_pred --ceEEEEeCc
Confidence 568887754
No 60
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.20 E-value=2.5e-10 Score=109.61 Aligned_cols=187 Identities=16% Similarity=0.230 Sum_probs=121.4
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEE-EecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKI-YVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl-~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
-++|||++||.|+...+|+.+|..|--... ..| ++++...-.+-+|||+|.+..+|..|+..|||..|.+-
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEg--------slLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE 105 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEG--------SLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPE 105 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccc--------eeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccc
Confidence 489999999999999999999998865554 333 22322223457999999999999999999999999865
Q ss_pred CCeeEEEecccccccchhhhhhh-----------hchHHHHhHHHHHhh-------------------------------
Q 009565 367 GKIPMSVTQAKFEQKGERFIAKQ-----------VDSKKKKKLKKVEEK------------------------------- 404 (532)
Q Consensus 367 ~~~~I~V~~A~~~~kg~~~~~~~-----------~~~~~~~k~~k~~~k------------------------------- 404 (532)
....|++..|+.+.+..+..... .......+...++.-
T Consensus 106 ~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a 185 (284)
T KOG1457|consen 106 TGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSA 185 (284)
T ss_pred cCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhh
Confidence 54667887776543321110000 000000000000000
Q ss_pred hhcCCCCCC----------CCCCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEE
Q 009565 405 MLGWGGRDD----------AKLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVR 474 (532)
Q Consensus 405 ~~~~~~~~~----------~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~ 474 (532)
...|.+... ...+...++||-|| -++..+ +.|+.+|+.|-....++|.....-.+|||.
T Consensus 186 ~~~~~P~a~a~l~ks~q~~~~~~acstlfianl--~~~~~e---------d~l~~~~~~~~gf~~l~~~~~~g~~vaf~~ 254 (284)
T KOG1457|consen 186 PDSKAPSANAHLEKSSQGGSGARACSTLFIANL--GPNCTE---------DELKQLLSRYPGFHILKIRARGGMPVAFAD 254 (284)
T ss_pred hhhcCCcccchhhhhhcccccchhhhhHhhhcc--CCCCCH---------HHHHHHHHhCCCceEEEEecCCCcceEeec
Confidence 000110000 00011227889998 344333 478999999998888888766656689999
Q ss_pred eCCHHHHHHHHHHHCCcEe
Q 009565 475 FKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 475 F~s~eeA~kAi~~LnGr~f 493 (532)
|.+.+.|..|+..|.|..+
T Consensus 255 ~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 255 FEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred HHHHHHHHHHHHHhhccee
Confidence 9999999999999998766
No 61
>PLN03213 repressor of silencing 3; Provisional
Probab=99.19 E-value=4.4e-11 Score=125.30 Aligned_cols=77 Identities=17% Similarity=0.310 Sum_probs=69.4
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCH--HHHHHHHHHhCCceec
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKE--PSVALATQLLDGTPFR 364 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~--esA~~Al~~LnG~~l~ 364 (532)
...+||||||++++|+++|..+|+.||.|.. |.|++ .+| ||||||+|... .++.+||..|||..++
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkd--------VEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWK 76 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDA--------VEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWK 76 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeec
Confidence 4588999999999999999999999999996 99995 477 99999999987 7899999999999998
Q ss_pred CCCCeeEEEecccc
Q 009565 365 PDGKIPMSVTQAKF 378 (532)
Q Consensus 365 ~G~~~~I~V~~A~~ 378 (532)
| +.|+|..|+.
T Consensus 77 -G--R~LKVNKAKP 87 (759)
T PLN03213 77 -G--GRLRLEKAKE 87 (759)
T ss_pred -C--ceeEEeeccH
Confidence 6 4688888874
No 62
>smart00362 RRM_2 RNA recognition motif.
Probab=99.18 E-value=1e-10 Score=91.37 Aligned_cols=71 Identities=39% Similarity=0.585 Sum_probs=64.1
Q ss_pred EEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCCCe
Q 009565 290 HVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKI 369 (532)
Q Consensus 290 ~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~~~ 369 (532)
+|||+|||..++.++|+++|.+||.|.. +.++.++ +.++|+|||+|.+.+.|..|+..|+|..+. | .
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~--------~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~-~--~ 67 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIES--------VKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLG-G--R 67 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEE--------EEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEEC-C--E
Confidence 4899999999999999999999999986 9998874 889999999999999999999999999996 4 4
Q ss_pred eEEE
Q 009565 370 PMSV 373 (532)
Q Consensus 370 ~I~V 373 (532)
+|.|
T Consensus 68 ~i~v 71 (72)
T smart00362 68 PLRV 71 (72)
T ss_pred EEee
Confidence 5655
No 63
>smart00361 RRM_1 RNA recognition motif.
Probab=99.17 E-value=1.1e-10 Score=94.38 Aligned_cols=60 Identities=33% Similarity=0.641 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhccCCeeEEE-E-ec-----cCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEE
Q 009565 442 ELEADVQEECVKIGPVDSVK-V-CE-----NHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHAS 501 (532)
Q Consensus 442 ei~edLre~fskfG~V~~V~-l-~~-----~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~ 501 (532)
+|++.+.++|++||.|.+|. | ++ ++++|+|||+|.+.++|.+|+..|||++|+||.|.++
T Consensus 4 ~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 4 DFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred hHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 45677778888999999985 3 32 4679999999999999999999999999999999873
No 64
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.16 E-value=4.2e-10 Score=118.61 Aligned_cols=163 Identities=24% Similarity=0.297 Sum_probs=117.3
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCCC
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~~ 368 (532)
--|=+++||+.+|+++|.++|+.|++-. +.+.+ .+|+..|.|||+|.+.+++.+||+ +|-..+ |.+
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~I~~---------~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~m--g~R 76 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCGIEN---------LEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESM--GHR 76 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCceeE---------EEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHh--CCc
Confidence 4477889999999999999999998643 66665 479999999999999999999995 555555 553
Q ss_pred eeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHHHHH
Q 009565 369 IPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEADVQ 448 (532)
Q Consensus 369 ~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLr 448 (532)
-|.|-.+........ .... .........+|.|+.| |... .++||.
T Consensus 77 -YIEVf~~~~~e~d~~---------------------~~~~--g~~s~~~d~vVRLRGL--Pfsc---------te~dI~ 121 (510)
T KOG4211|consen 77 -YIEVFTAGGAEADWV---------------------MRPG--GPNSSANDGVVRLRGL--PFSC---------TEEDIV 121 (510)
T ss_pred -eEEEEccCCcccccc---------------------ccCC--CCCCCCCCceEEecCC--CccC---------cHHHHH
Confidence 377766652211000 0000 0111123458999999 5544 345899
Q ss_pred HHhhccCCeeEEE-Ee---ccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEE
Q 009565 449 EECVKIGPVDSVK-VC---ENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHAS 501 (532)
Q Consensus 449 e~fskfG~V~~V~-l~---~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~ 501 (532)
+.|+-.-.|.... ++ +.++.|-|||+|.+.+.|++|+.. |...++-|-|.|-
T Consensus 122 ~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF 177 (510)
T KOG4211|consen 122 EFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVF 177 (510)
T ss_pred HHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEee
Confidence 9998776666633 33 337889999999999999999986 7788888888883
No 65
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.15 E-value=2e-10 Score=90.99 Aligned_cols=67 Identities=28% Similarity=0.604 Sum_probs=59.7
Q ss_pred EEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEE
Q 009565 422 VILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQI 498 (532)
Q Consensus 422 v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I 498 (532)
|+|+|| |..++ .++|++.|++||.|..+.+..+ +++|+|||+|.+.++|.+|+..|||..|+|+.|
T Consensus 1 l~v~nl--p~~~t---------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~i 69 (70)
T PF00076_consen 1 LYVGNL--PPDVT---------EEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKI 69 (70)
T ss_dssp EEEESE--TTTSS---------HHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred cEEcCC--CCcCC---------HHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCc
Confidence 689999 66553 3589999999999999999874 678999999999999999999999999999998
Q ss_pred E
Q 009565 499 H 499 (532)
Q Consensus 499 ~ 499 (532)
+
T Consensus 70 r 70 (70)
T PF00076_consen 70 R 70 (70)
T ss_dssp E
T ss_pred C
Confidence 6
No 66
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=1.2e-10 Score=117.17 Aligned_cols=81 Identities=22% Similarity=0.340 Sum_probs=71.8
Q ss_pred CCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc--CCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 416 LTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN--HPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 416 ~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~--~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
...++.|+|.|| |..+.+. ||+.+|.+||.|.+|.|+-+ -++||+||+|+++++|++|-..|||..+
T Consensus 93 ~~~pkRLhVSNI--PFrFRdp---------DL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~V 161 (376)
T KOG0125|consen 93 KDTPKRLHVSNI--PFRFRDP---------DLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVV 161 (376)
T ss_pred CCCCceeEeecC--CccccCc---------cHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhccee
Confidence 345679999999 6666543 89999999999999998865 6899999999999999999999999999
Q ss_pred CCeEEEEEeecCCc
Q 009565 494 GGRQIHASEDDGLV 507 (532)
Q Consensus 494 ~GR~I~V~~~dg~~ 507 (532)
.||+|+|..+.-++
T Consensus 162 EGRkIEVn~ATarV 175 (376)
T KOG0125|consen 162 EGRKIEVNNATARV 175 (376)
T ss_pred eceEEEEeccchhh
Confidence 99999999988764
No 67
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=1.6e-10 Score=116.24 Aligned_cols=79 Identities=20% Similarity=0.269 Sum_probs=71.9
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
....+|||+|||+..-+-+|+.+|.+||.|.+ |.|+.+ ...+||||||+|.+.++|++|-..|+|+.+.
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~Vld--------VEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VE- 162 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLD--------VEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVE- 162 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceee--------EEEEec--cCCCCccceEEecChhhHHHHHHHhhcceee-
Confidence 34588999999999999999999999999997 999987 3568999999999999999999999999998
Q ss_pred CCCeeEEEeccc
Q 009565 366 DGKIPMSVTQAK 377 (532)
Q Consensus 366 G~~~~I~V~~A~ 377 (532)
| ++|.|..|.
T Consensus 163 G--RkIEVn~AT 172 (376)
T KOG0125|consen 163 G--RKIEVNNAT 172 (376)
T ss_pred c--eEEEEeccc
Confidence 6 678998876
No 68
>smart00360 RRM RNA recognition motif.
Probab=99.11 E-value=2.5e-10 Score=88.74 Aligned_cols=70 Identities=40% Similarity=0.598 Sum_probs=63.2
Q ss_pred EECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCCCeeEE
Q 009565 293 VTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKIPMS 372 (532)
Q Consensus 293 V~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~~~~I~ 372 (532)
|+|||..+++++|+.+|+.||.|.. +.+..++.++.++|+|||.|.+.++|..|+..|++..+. | ..|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~--------~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~-~--~~~~ 69 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIES--------VRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD-G--RPLK 69 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeE--------EEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC-C--cEEE
Confidence 5799999999999999999999986 999998778999999999999999999999999999985 4 4455
Q ss_pred E
Q 009565 373 V 373 (532)
Q Consensus 373 V 373 (532)
|
T Consensus 70 v 70 (71)
T smart00360 70 V 70 (71)
T ss_pred e
Confidence 5
No 69
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=3.4e-10 Score=96.79 Aligned_cols=78 Identities=31% Similarity=0.411 Sum_probs=68.1
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..|+-|||+|||+++|.+++.++|.+||.|.. |+|=- +...+|.|||.|.+..+|.+|+..|+|..+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQ--------IRiG~---~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~- 83 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQ--------IRIGN---TKETRGTAFVVYEDIFDAKKACDHLSGYNVD- 83 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEE--------EEecC---ccCcCceEEEEehHhhhHHHHHHHhcccccC-
Confidence 57889999999999999999999999999996 87754 4567999999999999999999999999996
Q ss_pred CCCeeEEEeccc
Q 009565 366 DGKIPMSVTQAK 377 (532)
Q Consensus 366 G~~~~I~V~~A~ 377 (532)
+ +.+.|-.-.
T Consensus 84 ~--ryl~vlyyq 93 (124)
T KOG0114|consen 84 N--RYLVVLYYQ 93 (124)
T ss_pred C--ceEEEEecC
Confidence 3 556666554
No 70
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.10 E-value=1.5e-10 Score=123.74 Aligned_cols=81 Identities=25% Similarity=0.438 Sum_probs=76.2
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCCC
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~~ 368 (532)
+.|||||||+++++++|.++|+..|.|.+ ++++.|+.||+++|||||+|.+.+.+..|++.|||..+. |
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s--------~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~-g-- 87 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLS--------FRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN-G-- 87 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccce--------eeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC-C--
Confidence 78999999999999999999999999998 999999999999999999999999999999999999996 5
Q ss_pred eeEEEecccccc
Q 009565 369 IPMSVTQAKFEQ 380 (532)
Q Consensus 369 ~~I~V~~A~~~~ 380 (532)
++|+|.++....
T Consensus 88 r~l~v~~~~~~~ 99 (435)
T KOG0108|consen 88 RKLRVNYASNRK 99 (435)
T ss_pred ceEEeecccccc
Confidence 679998887543
No 71
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.09 E-value=1.5e-10 Score=109.93 Aligned_cols=87 Identities=21% Similarity=0.314 Sum_probs=79.5
Q ss_pred cCCCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCcee
Q 009565 284 ELKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPF 363 (532)
Q Consensus 284 ~~~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l 363 (532)
++..-+.|-|-||-+-+|.++|+.+|++||.|-. |.|.+|+.|+.++|||||.|....+|+.|+..|||.+|
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgD--------VyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~l 80 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGD--------VYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVL 80 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccc--------eecccccccccccceeEEEeeecchHHHHHHhhcceee
Confidence 3456688999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred cCCCCeeEEEeccccccc
Q 009565 364 RPDGKIPMSVTQAKFEQK 381 (532)
Q Consensus 364 ~~G~~~~I~V~~A~~~~k 381 (532)
. | +.|.|+.|.+...
T Consensus 81 d-g--RelrVq~arygr~ 95 (256)
T KOG4207|consen 81 D-G--RELRVQMARYGRP 95 (256)
T ss_pred c-c--ceeeehhhhcCCC
Confidence 7 6 6689998886543
No 72
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.04 E-value=1.4e-09 Score=85.42 Aligned_cols=73 Identities=34% Similarity=0.539 Sum_probs=64.7
Q ss_pred EEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCCCe
Q 009565 290 HVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKI 369 (532)
Q Consensus 290 ~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~~~ 369 (532)
+|||+|||+.+++++|+++|+.||.|.. +.+..++ .+.++|+|||.|.+.++|..|+..+++..+. | .
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~--------~~~~~~~-~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~-~--~ 68 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVES--------VRIVRDK-DTKSKGFAFVEFEDEEDAEKALEALNGKELG-G--R 68 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEE--------EEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCeEC-C--e
Confidence 4899999999999999999999999986 9999885 4478999999999999999999999999986 5 4
Q ss_pred eEEEe
Q 009565 370 PMSVT 374 (532)
Q Consensus 370 ~I~V~ 374 (532)
.|.|.
T Consensus 69 ~~~v~ 73 (74)
T cd00590 69 PLRVE 73 (74)
T ss_pred EEEEe
Confidence 56654
No 73
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=5.1e-10 Score=99.91 Aligned_cols=80 Identities=30% Similarity=0.428 Sum_probs=72.7
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
.+--|||+|+...+|+++|.+.|..||.|.. |.|-.|+.||..||||+|+|.+.+.|+.|+..|||..|. |
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKN--------ihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll-~ 141 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKN--------IHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL-G 141 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccc--------eeeccccccccccceeeeehHhHHHHHHHHHhccchhhh-C
Confidence 4566999999999999999999999999997 999999999999999999999999999999999999998 6
Q ss_pred CCeeEEEeccc
Q 009565 367 GKIPMSVTQAK 377 (532)
Q Consensus 367 ~~~~I~V~~A~ 377 (532)
. .|.|.++-
T Consensus 142 q--~v~VDw~F 150 (170)
T KOG0130|consen 142 Q--NVSVDWCF 150 (170)
T ss_pred C--ceeEEEEE
Confidence 4 46666554
No 74
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.98 E-value=1.9e-09 Score=86.10 Aligned_cols=67 Identities=30% Similarity=0.647 Sum_probs=58.2
Q ss_pred EEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEE
Q 009565 422 VILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQI 498 (532)
Q Consensus 422 v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I 498 (532)
|+|+|| |... ..++|++.|+.||.|..|.+..+ .++|+|||+|.+.++|.+|++.++|..|+||.|
T Consensus 1 v~i~nl--p~~~---------~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l 69 (70)
T PF14259_consen 1 VYISNL--PPST---------TEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKL 69 (70)
T ss_dssp EEEESS--TTT-----------HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CEEeCC--CCCC---------CHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEc
Confidence 689999 5554 23589999999999999999876 358999999999999999999999999999998
Q ss_pred E
Q 009565 499 H 499 (532)
Q Consensus 499 ~ 499 (532)
+
T Consensus 70 ~ 70 (70)
T PF14259_consen 70 R 70 (70)
T ss_dssp E
T ss_pred C
Confidence 5
No 75
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=1e-09 Score=102.11 Aligned_cols=77 Identities=23% Similarity=0.440 Sum_probs=68.6
Q ss_pred CcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEE
Q 009565 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQI 498 (532)
Q Consensus 419 ~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I 498 (532)
.+.|||.|| +... .+.+|..+|.+||.|.+|.|.. +|.|||||+|+++-+|..|+..|+|+.|.|..|
T Consensus 10 ~~kVYVGnL--~~~a---------~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~ 77 (195)
T KOG0107|consen 10 NTKVYVGNL--GSRA---------TKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRI 77 (195)
T ss_pred CceEEeccC--CCCc---------chHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccCceE
Confidence 568999999 3332 3458899999999999999987 678999999999999999999999999999999
Q ss_pred EEEeecCCc
Q 009565 499 HASEDDGLV 507 (532)
Q Consensus 499 ~V~~~dg~~ 507 (532)
.|++..|..
T Consensus 78 rVE~S~G~~ 86 (195)
T KOG0107|consen 78 RVELSTGRP 86 (195)
T ss_pred EEEeecCCc
Confidence 999998863
No 76
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.97 E-value=2.2e-09 Score=106.92 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=65.2
Q ss_pred CcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccC-CCcEEEEEeCCHHHHHHHHHHHCCcEeCCeE
Q 009565 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENH-PQGVVLVRFKDRKDAQKCIELMNGRWFGGRQ 497 (532)
Q Consensus 419 ~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~-~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~ 497 (532)
.++|+|.|| +... .+++|+++|+.||.|.+|.|+.++ ++|||||+|.++++|..||. |||..|.||.
T Consensus 4 ~rtVfVgNL--s~~t---------TE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~ 71 (260)
T PLN03120 4 VRTVKVSNV--SLKA---------TERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQS 71 (260)
T ss_pred CCEEEEeCC--CCCC---------CHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCce
Confidence 469999999 4443 235899999999999999998764 68999999999999999994 9999999999
Q ss_pred EEEEeec
Q 009565 498 IHASEDD 504 (532)
Q Consensus 498 I~V~~~d 504 (532)
|+|...+
T Consensus 72 V~Vt~a~ 78 (260)
T PLN03120 72 VTITPAE 78 (260)
T ss_pred EEEEecc
Confidence 9999986
No 77
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.97 E-value=8.1e-09 Score=106.70 Aligned_cols=185 Identities=19% Similarity=0.266 Sum_probs=130.2
Q ss_pred CcEEEEECCCC-CCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 288 NTHVYVTGLPD-DVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 288 ~~~VyV~nLP~-~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
|+.|.|.||.. .+|.+-|.-+|+-||.|. ||+|+.++ +--|+|.|.+...|..|+..|+|..+. |
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVq--------RVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~-g 362 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQ--------RVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLY-G 362 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceE--------EEEeeecC-----CcceeeeecchhHHHHHHHHhhcceec-C
Confidence 78899999975 489999999999999999 59999874 356999999999999999999999998 6
Q ss_pred CCeeEEEecccccc---cc--hhh--hhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhh
Q 009565 367 GKIPMSVTQAKFEQ---KG--ERF--IAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENL 439 (532)
Q Consensus 367 ~~~~I~V~~A~~~~---kg--~~~--~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l 439 (532)
++|+|..++... +. ... ..+........+.++...+. -..-.+.+.++.+.|+ |...
T Consensus 363 --k~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN------~~ni~PpsatlHlsni--p~sv------ 426 (492)
T KOG1190|consen 363 --KKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKN------YQNIFPPSATLHLSNI--PPSV------ 426 (492)
T ss_pred --ceEEEeeccCccccCCCCCCccccccccCCCCchhhccCccccc------ccccCCchhheeeccC--Cccc------
Confidence 567777665321 11 000 00000000000111000000 0001122348888998 5544
Q ss_pred HHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCe-EEEEEeecC
Q 009565 440 RSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGR-QIHASEDDG 505 (532)
Q Consensus 440 ~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR-~I~V~~~dg 505 (532)
.+++++..|..-|-+.+...+-.+.+-++.+.+.+.++|..|+..||...+++. .|+|+|...
T Consensus 427 ---see~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 427 ---SEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ---chhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 346999999998877666655555567999999999999999999999999876 899998643
No 78
>smart00362 RRM_2 RNA recognition motif.
Probab=98.94 E-value=4.5e-09 Score=81.98 Aligned_cols=70 Identities=34% Similarity=0.672 Sum_probs=60.1
Q ss_pred EEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccC--CCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEE
Q 009565 421 TVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENH--PQGVVLVRFKDRKDAQKCIELMNGRWFGGRQI 498 (532)
Q Consensus 421 ~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~--~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I 498 (532)
+|+|.|+ |.... .++|++.|.+||.|..+.+..+. +.|+|||+|.+.++|.+|+..|+|..|.|++|
T Consensus 1 ~v~i~~l--~~~~~---------~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i 69 (72)
T smart00362 1 TLFVGNL--PPDVT---------EEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPL 69 (72)
T ss_pred CEEEcCC--CCcCC---------HHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEE
Confidence 4788898 54442 24889999999999999988753 67999999999999999999999999999999
Q ss_pred EEE
Q 009565 499 HAS 501 (532)
Q Consensus 499 ~V~ 501 (532)
+|.
T Consensus 70 ~v~ 72 (72)
T smart00362 70 RVE 72 (72)
T ss_pred eeC
Confidence 873
No 79
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=6.1e-10 Score=106.64 Aligned_cols=83 Identities=28% Similarity=0.372 Sum_probs=77.0
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||++|-..+|+.-|...|-+||.|.. |+|+.|-++++++|||||+|.-.|+|..||.-||+.+|. |
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~d--------IqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~-G 79 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKD--------IQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELF-G 79 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhh--------cccccchhcccccceeEEEeeccchhHHHhhcCchhhhc-c
Confidence 4588999999999999999999999999997 999999999999999999999999999999999999998 6
Q ss_pred CCeeEEEecccccc
Q 009565 367 GKIPMSVTQAKFEQ 380 (532)
Q Consensus 367 ~~~~I~V~~A~~~~ 380 (532)
+.|+|..|+...
T Consensus 80 --rtirVN~AkP~k 91 (298)
T KOG0111|consen 80 --RTIRVNLAKPEK 91 (298)
T ss_pred --eeEEEeecCCcc
Confidence 678998887543
No 80
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=7.5e-09 Score=100.86 Aligned_cols=78 Identities=24% Similarity=0.370 Sum_probs=69.0
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
...+|.|.|| +.++.. .+|+++|.+||.|.+|.|.++ .++|||||.|.+.++|.+||..|||+-+
T Consensus 188 D~~tvRvtNL--sed~~E---------~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy 256 (270)
T KOG0122|consen 188 DEATVRVTNL--SEDMRE---------DDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY 256 (270)
T ss_pred ccceeEEecC--ccccCh---------hHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc
Confidence 3568999999 555543 388999999999999999876 6799999999999999999999999999
Q ss_pred CCeEEEEEeecCC
Q 009565 494 GGRQIHASEDDGL 506 (532)
Q Consensus 494 ~GR~I~V~~~dg~ 506 (532)
+.-.|+|++...+
T Consensus 257 d~LILrvEwskP~ 269 (270)
T KOG0122|consen 257 DNLILRVEWSKPS 269 (270)
T ss_pred ceEEEEEEecCCC
Confidence 9999999998765
No 81
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.83 E-value=5.5e-09 Score=99.49 Aligned_cols=74 Identities=22% Similarity=0.414 Sum_probs=63.8
Q ss_pred CcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeC
Q 009565 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFG 494 (532)
Q Consensus 419 ~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~ 494 (532)
-..|.|-||- .- ..-++|+.+|++||.|-.|.|+.+ .++|||||.|....+|+.|+.+|+|.+++
T Consensus 13 m~SLkVdNLT--yR---------Tspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ld 81 (256)
T KOG4207|consen 13 MTSLKVDNLT--YR---------TSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLD 81 (256)
T ss_pred ceeEEeccee--cc---------CCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeec
Confidence 4578888881 11 122489999999999999999976 68999999999999999999999999999
Q ss_pred CeEEEEEee
Q 009565 495 GRQIHASED 503 (532)
Q Consensus 495 GR~I~V~~~ 503 (532)
||.|.|.++
T Consensus 82 gRelrVq~a 90 (256)
T KOG4207|consen 82 GRELRVQMA 90 (256)
T ss_pred cceeeehhh
Confidence 999999885
No 82
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.81 E-value=3.2e-08 Score=98.91 Aligned_cols=96 Identities=17% Similarity=0.377 Sum_probs=79.9
Q ss_pred HHhhhhcCCCCCCCCCCC--CcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEE
Q 009565 401 VEEKMLGWGGRDDAKLTI--PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVR 474 (532)
Q Consensus 401 ~~~k~~~~~~~~~~~~~~--~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~ 474 (532)
+...+..|.++.+..... -+||||.-| +.+. .+..|+.+|++||+|++|.|+.+ .|+|||||.
T Consensus 81 ~~~~l~~wdP~~dp~a~gDPy~TLFv~RL--nydT---------~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIe 149 (335)
T KOG0113|consen 81 LERRLKLWDPNNDPNAIGDPYKTLFVARL--NYDT---------SESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIE 149 (335)
T ss_pred HHHHHHhcCCCCCCcccCCccceeeeeec--cccc---------cHHHHHHHHHhcCcceeEEEeeecccCCccceEEEE
Confidence 556677898876554432 359999988 3332 23489999999999999999876 799999999
Q ss_pred eCCHHHHHHHHHHHCCcEeCCeEEEEEeecCCc
Q 009565 475 FKDRKDAQKCIELMNGRWFGGRQIHASEDDGLV 507 (532)
Q Consensus 475 F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~~ 507 (532)
|++.-+...|.+..+|..|+||.|.|.+-.|.|
T Consensus 150 ye~erdm~~AYK~adG~~Idgrri~VDvERgRT 182 (335)
T KOG0113|consen 150 YEHERDMKAAYKDADGIKIDGRRILVDVERGRT 182 (335)
T ss_pred eccHHHHHHHHHhccCceecCcEEEEEeccccc
Confidence 999999999999999999999999999988875
No 83
>smart00361 RRM_1 RNA recognition motif.
Probab=98.81 E-value=1.5e-08 Score=81.76 Aligned_cols=61 Identities=26% Similarity=0.407 Sum_probs=52.6
Q ss_pred HHHHHHHHh----ccCccccCCCCCCCeEE-EEecCCC--CCccccEEEEecCHHHHHHHHHHhCCceecCCCCeeEEE
Q 009565 302 VEEMVEVFS----KCGIIKEDPETKKPRIK-IYVDKET--GMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKIPMSV 373 (532)
Q Consensus 302 eeeL~elFs----k~G~I~~d~~~~~prik-l~~d~~t--G~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~~~~I~V 373 (532)
+++|+++|+ +||.|.+ |. |+.++.+ |.++|||||.|.+.++|..|+..|||..+. | +.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~--------v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~-g--r~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGK--------INKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD-G--RTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeE--------EEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC-C--EEEEe
Confidence 578888998 9999996 74 7777666 999999999999999999999999999996 5 55654
No 84
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.81 E-value=1.4e-08 Score=112.59 Aligned_cols=74 Identities=24% Similarity=0.279 Sum_probs=65.2
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhcc--CccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKC--GIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~--G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
..++|||+|||.++|+++|+++|++| |.|.. |+++ ++||||+|.+.++|.+||..|||..|.
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~r--------V~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~ 295 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVER--------VKKI--------RDYAFVHFEDREDAVKAMDELNGKELE 295 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEE--------EEee--------cCeEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 44789999999999999999999999 99985 7665 459999999999999999999999996
Q ss_pred CCCCeeEEEeccccc
Q 009565 365 PDGKIPMSVTQAKFE 379 (532)
Q Consensus 365 ~G~~~~I~V~~A~~~ 379 (532)
| +.|.|..++..
T Consensus 296 -G--r~I~V~~Akp~ 307 (578)
T TIGR01648 296 -G--SEIEVTLAKPV 307 (578)
T ss_pred -C--EEEEEEEccCC
Confidence 5 67888887643
No 85
>smart00360 RRM RNA recognition motif.
Probab=98.81 E-value=1.4e-08 Score=78.81 Aligned_cols=57 Identities=28% Similarity=0.616 Sum_probs=52.1
Q ss_pred HHHHHHhhccCCeeEEEEeccC----CCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEE
Q 009565 445 ADVQEECVKIGPVDSVKVCENH----PQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHAS 501 (532)
Q Consensus 445 edLre~fskfG~V~~V~l~~~~----~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~ 501 (532)
++|+..|+.||.|..+.+..+. ++|+|||+|.+.++|.+|+..|||..|+|+.|+|+
T Consensus 11 ~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 11 EELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred HHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5899999999999999998753 47999999999999999999999999999999873
No 86
>PLN03213 repressor of silencing 3; Provisional
Probab=98.79 E-value=2e-08 Score=105.65 Aligned_cols=76 Identities=13% Similarity=0.208 Sum_probs=66.8
Q ss_pred CcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCH--HHHHHHHHHHCCcEeCCe
Q 009565 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDR--KDAQKCIELMNGRWFGGR 496 (532)
Q Consensus 419 ~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~--eeA~kAi~~LnGr~f~GR 496 (532)
...|||+|| .... ..+||+..|+.||.|.+|.|++...+|||||+|.+. .++.+||..|||..+.||
T Consensus 10 gMRIYVGNL--SydV---------TEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR 78 (759)
T PLN03213 10 GVRLHVGGL--GESV---------GRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGG 78 (759)
T ss_pred ceEEEEeCC--CCCC---------CHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCc
Confidence 358999999 3433 235999999999999999999887899999999987 789999999999999999
Q ss_pred EEEEEeecC
Q 009565 497 QIHASEDDG 505 (532)
Q Consensus 497 ~I~V~~~dg 505 (532)
.|+|..+..
T Consensus 79 ~LKVNKAKP 87 (759)
T PLN03213 79 RLRLEKAKE 87 (759)
T ss_pred eeEEeeccH
Confidence 999988765
No 87
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.78 E-value=1.7e-08 Score=86.47 Aligned_cols=79 Identities=15% Similarity=0.268 Sum_probs=68.5
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEec-cCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCE-NHPQGVVLVRFKDRKDAQKCIELMNGRWFGGR 496 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~-~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR 496 (532)
..+.|||+|| |..++. +++-++|.+||+|..|+|-. ...+|-|||-|++..+|.+|+..|+|..+.+|
T Consensus 17 vnriLyirNL--p~~ITs---------eemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~r 85 (124)
T KOG0114|consen 17 VNRILYIRNL--PFKITS---------EEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNR 85 (124)
T ss_pred hheeEEEecC--CccccH---------HHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCc
Confidence 3468999999 766644 46779999999999999853 36789999999999999999999999999999
Q ss_pred EEEEEeecCCc
Q 009565 497 QIHASEDDGLV 507 (532)
Q Consensus 497 ~I~V~~~dg~~ 507 (532)
.|.|-||....
T Consensus 86 yl~vlyyq~~~ 96 (124)
T KOG0114|consen 86 YLVVLYYQPED 96 (124)
T ss_pred eEEEEecCHHH
Confidence 99999987653
No 88
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=1e-08 Score=107.03 Aligned_cols=75 Identities=25% Similarity=0.345 Sum_probs=67.3
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
+-..|||+||+.++|++.|+++|+.||.|. ||+.++| ||||+|.+.++|.+|++.+||+.|. |
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~ve--------RVkk~rD--------YaFVHf~eR~davkAm~~~ngkeld-G 320 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVE--------RVKKPRD--------YAFVHFAEREDAVKAMKETNGKELD-G 320 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceE--------Eeecccc--------eeEEeecchHHHHHHHHHhcCceec-C
Confidence 346799999999999999999999999999 4888877 9999999999999999999999997 6
Q ss_pred CCeeEEEecccccc
Q 009565 367 GKIPMSVTQAKFEQ 380 (532)
Q Consensus 367 ~~~~I~V~~A~~~~ 380 (532)
..|.|..|+...
T Consensus 321 --~~iEvtLAKP~~ 332 (506)
T KOG0117|consen 321 --SPIEVTLAKPVD 332 (506)
T ss_pred --ceEEEEecCChh
Confidence 568998888543
No 89
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=6.6e-09 Score=102.14 Aligned_cols=79 Identities=22% Similarity=0.346 Sum_probs=72.7
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..+|+|||=.||...++.||...|-.||.|.+ .+++.|+.|..+|.||||.|.++.++..||..|||..|
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivS--------aKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQI-- 352 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVS--------AKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQI-- 352 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceee--------eeeeehhccccccceeeEecCCchhHHHHHHHhcchhh--
Confidence 46799999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred CCCeeEEEec
Q 009565 366 DGKIPMSVTQ 375 (532)
Q Consensus 366 G~~~~I~V~~ 375 (532)
|- ++|+|+.
T Consensus 353 GM-KRLKVQL 361 (371)
T KOG0146|consen 353 GM-KRLKVQL 361 (371)
T ss_pred hh-hhhhhhh
Confidence 43 4466654
No 90
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.75 E-value=5.5e-08 Score=76.17 Aligned_cols=71 Identities=32% Similarity=0.644 Sum_probs=60.5
Q ss_pred EEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccC---CCcEEEEEeCCHHHHHHHHHHHCCcEeCCeE
Q 009565 421 TVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENH---PQGVVLVRFKDRKDAQKCIELMNGRWFGGRQ 497 (532)
Q Consensus 421 ~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~---~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~ 497 (532)
+|+|.|| |.... .++|++.|..||.|..+.+.... +.|+|||+|.+.++|..|+..|+|..|.|+.
T Consensus 1 ~i~i~~l--~~~~~---------~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~ 69 (74)
T cd00590 1 TLFVGNL--PPDVT---------EEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRP 69 (74)
T ss_pred CEEEeCC--CCccC---------HHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 3778888 44432 35889999999999999998653 5899999999999999999999999999999
Q ss_pred EEEEe
Q 009565 498 IHASE 502 (532)
Q Consensus 498 I~V~~ 502 (532)
|.|.+
T Consensus 70 ~~v~~ 74 (74)
T cd00590 70 LRVEF 74 (74)
T ss_pred EEEeC
Confidence 99864
No 91
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.74 E-value=4.6e-08 Score=96.33 Aligned_cols=75 Identities=16% Similarity=0.207 Sum_probs=65.1
Q ss_pred CcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc-CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeE
Q 009565 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN-HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQ 497 (532)
Q Consensus 419 ~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~-~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~ 497 (532)
..+|+|.|| .... ..++|++.|+.||+|.+|.|+++ ...|+|||+|.++++|..|+ .|||..|.+++
T Consensus 5 g~TV~V~NL--S~~t---------TE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~ 72 (243)
T PLN03121 5 GYTAEVTNL--SPKA---------TEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQR 72 (243)
T ss_pred ceEEEEecC--CCCC---------CHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCce
Confidence 469999999 3332 34699999999999999999876 56689999999999999999 69999999999
Q ss_pred EEEEeecC
Q 009565 498 IHASEDDG 505 (532)
Q Consensus 498 I~V~~~dg 505 (532)
|.|..|..
T Consensus 73 I~It~~~~ 80 (243)
T PLN03121 73 VCITRWGQ 80 (243)
T ss_pred EEEEeCcc
Confidence 99999764
No 92
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.74 E-value=3.2e-07 Score=94.10 Aligned_cols=193 Identities=16% Similarity=0.202 Sum_probs=131.2
Q ss_pred CCCcEEEEECCC--CCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCcee
Q 009565 286 KVNTHVYVTGLP--DDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPF 363 (532)
Q Consensus 286 ~~~~~VyV~nLP--~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l 363 (532)
..|.-|.++=|. +.||.+-|+.+...+|.|. ||.|++. +|- -|.|+|.+.+.|++|...|||..|
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVl--------RIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADI 184 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQGKVL--------RIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADI 184 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCCceE--------EEEEEec--cce---eeEEeechhHHHHHHHhhcccccc
Confidence 456666666554 5699999999999999999 4888875 343 599999999999999999999999
Q ss_pred cCCCCeeEEEecccccccch---------hhhhh---hhchHH----HHhH-HHHHhhhhcCCCC-C-------------
Q 009565 364 RPDGKIPMSVTQAKFEQKGE---------RFIAK---QVDSKK----KKKL-KKVEEKMLGWGGR-D------------- 412 (532)
Q Consensus 364 ~~G~~~~I~V~~A~~~~kg~---------~~~~~---~~~~~~----~~k~-~k~~~k~~~~~~~-~------------- 412 (532)
..|+ +.|+|.+|+...-.. +..+. ..+..+ +.+. ..+.....+|++. .
T Consensus 185 YsGC-CTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~ 263 (494)
T KOG1456|consen 185 YSGC-CTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHP 263 (494)
T ss_pred cccc-eeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCC
Confidence 9766 689999988643111 00000 000000 0000 0000111223320 0
Q ss_pred ----------C-------CCCCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEe
Q 009565 413 ----------D-------AKLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRF 475 (532)
Q Consensus 413 ----------~-------~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F 475 (532)
+ ......+++.|..|-. ..+.. +.|+.+|..||.|.+|++++.+ .|.|.|++
T Consensus 264 ~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh-~k~N~---------drlFNl~ClYGNV~rvkFmkTk-~gtamVem 332 (494)
T KOG1456|consen 264 PPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDH-GKMNC---------DRLFNLFCLYGNVERVKFMKTK-PGTAMVEM 332 (494)
T ss_pred CCCCCccccccCCCCCCCCCCCCCcEEEEEeccc-cccch---------hhhhhhhhhcCceeeEEEeecc-cceeEEEc
Confidence 0 0111234677777721 22222 3788999999999999998754 48999999
Q ss_pred CCHHHHHHHHHHHCCcEeCCeEEEEEee
Q 009565 476 KDRKDAQKCIELMNGRWFGGRQIHASED 503 (532)
Q Consensus 476 ~s~eeA~kAi~~LnGr~f~GR~I~V~~~ 503 (532)
.+..+.++|+..||+..+.|.+|.|.+.
T Consensus 333 gd~~aver~v~hLnn~~lfG~kl~v~~S 360 (494)
T KOG1456|consen 333 GDAYAVERAVTHLNNIPLFGGKLNVCVS 360 (494)
T ss_pred CcHHHHHHHHHHhccCccccceEEEeec
Confidence 9999999999999999999999988765
No 93
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.73 E-value=1.5e-07 Score=96.47 Aligned_cols=164 Identities=21% Similarity=0.268 Sum_probs=111.7
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCCC
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~~ 368 (532)
-.|.|++|-..+++.+|.+.++.||+|.- +.++. .+..|+|+|.+.+.|..|+..--...+.
T Consensus 32 pvvhvr~l~~~v~eadl~eal~~fG~i~y--------vt~~P------~~r~alvefedi~~akn~Vnfaa~n~i~---- 93 (494)
T KOG1456|consen 32 PVVHVRGLHQGVVEADLVEALSNFGPIAY--------VTCMP------HKRQALVEFEDIEGAKNCVNFAADNQIY---- 93 (494)
T ss_pred ceEEEeccccccchhHHHHHHhcCCceEE--------EEecc------ccceeeeeeccccchhhheehhccCccc----
Confidence 56999999999999999999999999983 55443 3457999999999999998644333332
Q ss_pred eeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccC-CcccCcchhhHHHHHHHH
Q 009565 369 IPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFT-PAEMRADENLRSELEADV 447 (532)
Q Consensus 369 ~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~-p~~~~~D~~l~~ei~edL 447 (532)
|.-+.|-+....... +..-+ +.. ..+..|.|.-+.. ...++.| -|
T Consensus 94 --i~gq~Al~NyStsq~-------------------i~R~g---~es-~~pN~VLl~TIlNp~YpItvD---------Vl 139 (494)
T KOG1456|consen 94 --IAGQQALFNYSTSQC-------------------IERPG---DES-ATPNKVLLFTILNPQYPITVD---------VL 139 (494)
T ss_pred --ccCchhhcccchhhh-------------------hccCC---CCC-CCCCeEEEEEeecCccccchh---------hh
Confidence 222233332221110 10011 111 1222333333322 2333334 46
Q ss_pred HHHhhccCCeeEEEEeccCCCcE-EEEEeCCHHHHHHHHHHHCCcEe--CCeEEEEEeecCC
Q 009565 448 QEECVKIGPVDSVKVCENHPQGV-VLVRFKDRKDAQKCIELMNGRWF--GGRQIHASEDDGL 506 (532)
Q Consensus 448 re~fskfG~V~~V~l~~~~~kG~-aFV~F~s~eeA~kAi~~LnGr~f--~GR~I~V~~~dg~ 506 (532)
..+|...|.|.+|.|++.+ |+ |.|+|++.+.|++|..+|||..+ +-.+|+|.|+...
T Consensus 140 y~Icnp~GkVlRIvIfkkn--gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 140 YTICNPQGKVLRIVIFKKN--GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred hhhcCCCCceEEEEEEecc--ceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 6899999999999999874 65 99999999999999999999755 3489999998774
No 94
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.70 E-value=1.7e-08 Score=100.40 Aligned_cols=84 Identities=33% Similarity=0.496 Sum_probs=70.2
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccC-----CCcEEEEEeCCHHHHHHHHHHHCCcEeC
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENH-----PQGVVLVRFKDRKDAQKCIELMNGRWFG 494 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~-----~kG~aFV~F~s~eeA~kAi~~LnGr~f~ 494 (532)
++|.++||..+.+. | .++...++++|.|||.|.+|.|+... ..-..||+|...++|.+|+-.||||+|+
T Consensus 282 kvlllrnmVg~gev--d----~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG 355 (378)
T KOG1996|consen 282 KVLLLRNMVGAGEV--D----EELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG 355 (378)
T ss_pred HHHHhhhhcCcccc--c----HHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec
Confidence 36889999887765 3 45678899999999999999998541 1235899999999999999999999999
Q ss_pred CeEEEEEeecCCcccc
Q 009565 495 GRQIHASEDDGLVNHA 510 (532)
Q Consensus 495 GR~I~V~~~dg~~~~~ 510 (532)
||.+.+.|++-. +|.
T Consensus 356 Gr~v~A~Fyn~e-kfs 370 (378)
T KOG1996|consen 356 GRVVSACFYNLE-KFS 370 (378)
T ss_pred ceeeeheeccHH-hhh
Confidence 999999998864 454
No 95
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.68 E-value=4.4e-08 Score=87.01 Aligned_cols=78 Identities=22% Similarity=0.354 Sum_probs=66.4
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
.+++|+|.|| +-. ..+|.|.++|+++|+|.+|.+--+ .|.|||||.|-+.++|..|++-+||+.+
T Consensus 35 ~S~tvyVgNl---Sfy--------ttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrL 103 (153)
T KOG0121|consen 35 KSCTVYVGNL---SFY--------TTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRL 103 (153)
T ss_pred hcceEEEeee---eee--------ecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcc
Confidence 4679999999 211 134688899999999999987432 6889999999999999999999999999
Q ss_pred CCeEEEEEeecCC
Q 009565 494 GGRQIHASEDDGL 506 (532)
Q Consensus 494 ~GR~I~V~~~dg~ 506 (532)
+.|+|++.+.-|-
T Consensus 104 ddr~ir~D~D~GF 116 (153)
T KOG0121|consen 104 DDRPIRIDWDAGF 116 (153)
T ss_pred cccceeeeccccc
Confidence 9999999987663
No 96
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.67 E-value=7.1e-08 Score=74.08 Aligned_cols=56 Identities=34% Similarity=0.559 Sum_probs=47.7
Q ss_pred HHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCCCeeEEEecc
Q 009565 305 MVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKIPMSVTQA 376 (532)
Q Consensus 305 L~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~~~~I~V~~A 376 (532)
|+++|++||.|.. |.+..+. +|+|||+|.+.++|..|++.|||..+. | ++|+|..|
T Consensus 1 L~~~f~~fG~V~~--------i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~-g--~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKK--------IKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFN-G--RPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEE--------EEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEET-T--EEEEEEEE
T ss_pred ChHHhCCcccEEE--------EEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEC-C--cEEEEEEC
Confidence 6889999999996 8887652 689999999999999999999999996 5 56888764
No 97
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.65 E-value=1.7e-08 Score=94.44 Aligned_cols=84 Identities=15% Similarity=0.283 Sum_probs=71.9
Q ss_pred CCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCc
Q 009565 416 LTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGR 491 (532)
Q Consensus 416 ~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr 491 (532)
...+.-|||.|| |.++++. ||.-.|++||.|..|.|+++ .++||||+.|++-.+..-|+..|||.
T Consensus 32 YkdsA~Iyiggl--~~~LtEg---------Dil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGi 100 (219)
T KOG0126|consen 32 YKDSAYIYIGGL--PYELTEG---------DILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGI 100 (219)
T ss_pred cccceEEEECCC--cccccCC---------cEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCc
Confidence 445668999999 7777655 67789999999999999987 78999999999999999999999999
Q ss_pred EeCCeEEEEEeecCCcccccCC
Q 009565 492 WFGGRQIHASEDDGLVNHAAIR 513 (532)
Q Consensus 492 ~f~GR~I~V~~~dg~~~~~~~~ 513 (532)
.+.||.|+|.... +|....
T Consensus 101 ki~gRtirVDHv~---~Yk~pk 119 (219)
T KOG0126|consen 101 KILGRTIRVDHVS---NYKKPK 119 (219)
T ss_pred eecceeEEeeecc---cccCCc
Confidence 9999999996543 565543
No 98
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.65 E-value=2.7e-08 Score=101.93 Aligned_cols=91 Identities=37% Similarity=0.632 Sum_probs=84.5
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..+.+|||.+||..+++..|.++|.+||.|..+-.|++|+|+|++|+.|+.+||-|.|.|.+...|..||.-+++..|.
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~- 142 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC- 142 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc-
Confidence 5678899999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| ..|+|..|...
T Consensus 143 g--n~ikvs~a~~r 154 (351)
T KOG1995|consen 143 G--NTIKVSLAERR 154 (351)
T ss_pred C--CCchhhhhhhc
Confidence 5 46888777643
No 99
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.61 E-value=6.9e-08 Score=90.64 Aligned_cols=78 Identities=18% Similarity=0.354 Sum_probs=67.8
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc-CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN-HPQGVVLVRFKDRKDAQKCIELMNGRWFGGR 496 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~-~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR 496 (532)
..+.|+|.|| |.++.+ .+|.++|.|||.|..|.|... .+.+||||+|+++-+|..||..-+|..|+|.
T Consensus 5 ~~~~iyvGNL--P~diRe---------keieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~ 73 (241)
T KOG0105|consen 5 NSRRIYVGNL--PGDIRE---------KEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGC 73 (241)
T ss_pred ccceEEecCC--Ccchhh---------ccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcc
Confidence 4578999999 776543 378899999999999998644 4568999999999999999999999999999
Q ss_pred EEEEEeecCC
Q 009565 497 QIHASEDDGL 506 (532)
Q Consensus 497 ~I~V~~~dg~ 506 (532)
+|+|+|..|-
T Consensus 74 rLRVEfprgg 83 (241)
T KOG0105|consen 74 RLRVEFPRGG 83 (241)
T ss_pred eEEEEeccCC
Confidence 9999998763
No 100
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.60 E-value=1.3e-08 Score=99.96 Aligned_cols=89 Identities=38% Similarity=0.639 Sum_probs=70.6
Q ss_pred CCCCCcEEEEecccCCcccCc-----------chh---hHHHHHHHHHHHhh-ccCCeeEEEEecc---CCCcEEEEEeC
Q 009565 415 KLTIPATVILRFMFTPAEMRA-----------DEN---LRSELEADVQEECV-KIGPVDSVKVCEN---HPQGVVLVRFK 476 (532)
Q Consensus 415 ~~~~~~~v~i~Nlf~p~~~~~-----------D~~---l~~ei~edLre~fs-kfG~V~~V~l~~~---~~kG~aFV~F~ 476 (532)
.+..+.+|+|.||+..++... |.+ -..++.|+|+.+|+ +||.|..++|.++ |-.|-+||.|.
T Consensus 39 kpt~s~t~ll~nmyq~P~~~~~~~d~~~~~~~de~~q~~~defyEd~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~ 118 (260)
T KOG2202|consen 39 KPTFSQTVLLKNMYQNPENSWERRDAQGQFLTDEELQRHEDEFYEDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFR 118 (260)
T ss_pred ccccchHHHHHHHHhCCCCCchhhhhccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcc
Confidence 334455777777755443222 222 23567799999998 9999999999887 77899999999
Q ss_pred CHHHHHHHHHHHCCcEeCCeEEEEEee
Q 009565 477 DRKDAQKCIELMNGRWFGGRQIHASED 503 (532)
Q Consensus 477 s~eeA~kAi~~LnGr~f~GR~I~V~~~ 503 (532)
..++|++|++.|||+||.|++|++.+.
T Consensus 119 ~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 119 SEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred cHHHHHHHHHHHcCccccCCcceeeec
Confidence 999999999999999999999999764
No 101
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.59 E-value=3.8e-08 Score=98.07 Aligned_cols=72 Identities=26% Similarity=0.294 Sum_probs=65.4
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCC
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~ 367 (532)
.|+|+|+||.+.+|.+||+..|.+||+|.+ +.|++| |+||.|.-.++|..||+.||+++|. |
T Consensus 78 stkl~vgNis~tctn~ElRa~fe~ygpvie--------cdivkd--------y~fvh~d~~eda~~air~l~~~~~~-g- 139 (346)
T KOG0109|consen 78 STKLHVGNISPTCTNQELRAKFEKYGPVIE--------CDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQ-G- 139 (346)
T ss_pred ccccccCCCCccccCHHHhhhhcccCCcee--------eeeecc--------eeEEEEeeccchHHHHhcccccccc-c-
Confidence 388999999999999999999999999997 999876 9999999999999999999999997 6
Q ss_pred CeeEEEecccc
Q 009565 368 KIPMSVTQAKF 378 (532)
Q Consensus 368 ~~~I~V~~A~~ 378 (532)
.+|+|+.+..
T Consensus 140 -k~m~vq~sts 149 (346)
T KOG0109|consen 140 -KRMHVQLSTS 149 (346)
T ss_pred -ceeeeeeecc
Confidence 5688876653
No 102
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.57 E-value=2.1e-07 Score=90.76 Aligned_cols=75 Identities=28% Similarity=0.549 Sum_probs=66.3
Q ss_pred CcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeC
Q 009565 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFG 494 (532)
Q Consensus 419 ~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~ 494 (532)
..+|+|+|| +..+ ..++|+++|.+||.|..|.+..+ .++|+|||.|.+.++|..|+..|+|..|.
T Consensus 115 ~~~l~v~nL--~~~~---------~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~ 183 (306)
T COG0724 115 NNTLFVGNL--PYDV---------TEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELE 183 (306)
T ss_pred CceEEEeCC--CCCC---------CHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeEC
Confidence 479999999 5443 34589999999999999988754 68999999999999999999999999999
Q ss_pred CeEEEEEeec
Q 009565 495 GRQIHASEDD 504 (532)
Q Consensus 495 GR~I~V~~~d 504 (532)
|++|.|.+..
T Consensus 184 ~~~~~v~~~~ 193 (306)
T COG0724 184 GRPLRVQKAQ 193 (306)
T ss_pred CceeEeeccc
Confidence 9999999954
No 103
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.55 E-value=1.2e-07 Score=90.53 Aligned_cols=80 Identities=21% Similarity=0.377 Sum_probs=69.2
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhcc-CccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKC-GIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~-G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...-+||..+|.-+-+.++..+|.+| |.+. ++++.|++.||++||||||+|.+++.|.-|-+.||++.|.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~--------r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~- 118 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVT--------RFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM- 118 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeE--------EEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh-
Confidence 34669999999999999999999988 6666 4889899999999999999999999999999999999997
Q ss_pred CCCeeEEEeccc
Q 009565 366 DGKIPMSVTQAK 377 (532)
Q Consensus 366 G~~~~I~V~~A~ 377 (532)
| +.|.+....
T Consensus 119 e--~lL~c~vmp 128 (214)
T KOG4208|consen 119 E--HLLECHVMP 128 (214)
T ss_pred h--heeeeEEeC
Confidence 5 345555443
No 104
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.55 E-value=1.7e-07 Score=90.76 Aligned_cols=82 Identities=15% Similarity=0.224 Sum_probs=70.9
Q ss_pred EEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc-CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEE
Q 009565 421 TVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN-HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIH 499 (532)
Q Consensus 421 ~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~-~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~ 499 (532)
++||.|| .+- .-..+++..|..+|+.||.|..|..+.. +.+|-|||.|++.+.|..|+..|+|..|-|++++
T Consensus 11 TlYInnL--nek-----I~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 11 TLYINNL--NEK-----IKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred eEeehhc--ccc-----ccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 9999999 222 2235677788889999999999998854 7799999999999999999999999999999999
Q ss_pred EEeecCCccc
Q 009565 500 ASEDDGLVNH 509 (532)
Q Consensus 500 V~~~dg~~~~ 509 (532)
+.|+..+.+.
T Consensus 84 iqyA~s~sdi 93 (221)
T KOG4206|consen 84 IQYAKSDSDI 93 (221)
T ss_pred eecccCccch
Confidence 9999887554
No 105
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.54 E-value=6.4e-07 Score=92.16 Aligned_cols=182 Identities=16% Similarity=0.204 Sum_probs=109.3
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCCC
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~~ 368 (532)
-.|-+++||+++|+.++.++|..--+|.. +.-.|-+++. -.|+..|.|||.|..++.|+.||. -+...+ |.+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~----g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~-khrq~i--GqR 233 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTG----GTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALR-KHRQNI--GQR 233 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccC----CccceEEEEC-CCCCcccceEEEecCHHHHHHHHH-HHHHHH--hHH
Confidence 34667899999999999999973211110 1112666665 479999999999999999999995 343444 432
Q ss_pred eeEEEecccccccchhhhhhhhchHHHHhHHHHH-hhhhcCCCCC---------CCCCCCCcEEEEecccCCcccCcchh
Q 009565 369 IPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVE-EKMLGWGGRD---------DAKLTIPATVILRFMFTPAEMRADEN 438 (532)
Q Consensus 369 ~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~-~k~~~~~~~~---------~~~~~~~~~v~i~Nlf~p~~~~~D~~ 438 (532)
. |.+-++... .-..-+++.. ..+..-.... .......-||.++.| |.+.
T Consensus 234 Y-IElFRSTaa-------------Evqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGL--Py~A----- 292 (508)
T KOG1365|consen 234 Y-IELFRSTAA-------------EVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGL--PYEA----- 292 (508)
T ss_pred H-HHHHHHhHH-------------HHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCC--Chhh-----
Confidence 1 222221100 0000000000 0011000000 001112348889998 5432
Q ss_pred hHHHHHHHHHHHhhccCC-eeE--EEEe---ccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEee
Q 009565 439 LRSELEADVQEECVKIGP-VDS--VKVC---ENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASED 503 (532)
Q Consensus 439 l~~ei~edLre~fskfG~-V~~--V~l~---~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~ 503 (532)
..|||...|.-|.. |.. |.+. ..++.|-|||+|.+.+.|..|...-|.+...+|.|.|--.
T Consensus 293 ----tvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 293 ----TVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred ----hHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 44566666655542 222 3333 3388999999999999999999999998888999998443
No 106
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.49 E-value=1.2e-08 Score=113.66 Aligned_cols=147 Identities=20% Similarity=0.288 Sum_probs=119.9
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
+.-.++||+||++.+.+.+|...|+.+|.+.. +++..-..+++++|+||+.|.+++++.+||...+++.+
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~--------vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~-- 734 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEV--------VQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF-- 734 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhh--------HHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh--
Confidence 34478999999999999999999999998875 55553346899999999999999999999965555544
Q ss_pred CCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHH
Q 009565 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEA 445 (532)
Q Consensus 366 G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~e 445 (532)
|. ..|+|+|. |..- +++
T Consensus 735 gK----------------------------------------------------~~v~i~g~--pf~g---------t~e 751 (881)
T KOG0128|consen 735 GK----------------------------------------------------ISVAISGP--PFQG---------TKE 751 (881)
T ss_pred hh----------------------------------------------------hhhheeCC--CCCC---------chH
Confidence 31 14666676 3332 345
Q ss_pred HHHHHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecC
Q 009565 446 DVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDG 505 (532)
Q Consensus 446 dLre~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg 505 (532)
.++.+|+++|+++++.++.. .|+|.+||.|.+..+|.+|+..+.+..+..+.+.|...+.
T Consensus 752 ~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 752 ELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred HHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 78899999999999987643 7899999999999999999999999999998888888554
No 107
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.42 E-value=3.4e-07 Score=89.86 Aligned_cols=83 Identities=18% Similarity=0.364 Sum_probs=73.4
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
...+||+|.|..+++.+-|...|.+|-.-.. .++++|+.||+++||+||.|.+..++..|++.|||..+ |
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~--------akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV--g 258 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQK--------AKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV--G 258 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhh--------ccccccccccccccceeeeecCHHHHHHHHHhhccccc--c
Confidence 4588999999999999999999999998875 89999999999999999999999999999999999999 4
Q ss_pred CCeeEEEecccccc
Q 009565 367 GKIPMSVTQAKFEQ 380 (532)
Q Consensus 367 ~~~~I~V~~A~~~~ 380 (532)
. ++|+........
T Consensus 259 s-rpiklRkS~wke 271 (290)
T KOG0226|consen 259 S-RPIKLRKSEWKE 271 (290)
T ss_pred c-chhHhhhhhHHh
Confidence 3 567666555443
No 108
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.40 E-value=6.2e-07 Score=96.19 Aligned_cols=75 Identities=25% Similarity=0.460 Sum_probs=66.4
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCC
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGG 495 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G 495 (532)
.+|+|+|+ |.+.. ++.|..+|+..|.|.++++..+ .++||||++|.+.++|.+|+..|||..|.|
T Consensus 19 ~~v~vgni--p~~~s---------e~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g 87 (435)
T KOG0108|consen 19 SSVFVGNI--PYEGS---------EEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG 87 (435)
T ss_pred cceEecCC--CCccc---------HHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC
Confidence 68999999 66653 4588899999999999998755 789999999999999999999999999999
Q ss_pred eEEEEEeecC
Q 009565 496 RQIHASEDDG 505 (532)
Q Consensus 496 R~I~V~~~dg 505 (532)
|+|+|.|...
T Consensus 88 r~l~v~~~~~ 97 (435)
T KOG0108|consen 88 RKLRVNYASN 97 (435)
T ss_pred ceEEeecccc
Confidence 9999966543
No 109
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.40 E-value=6.9e-07 Score=95.61 Aligned_cols=85 Identities=21% Similarity=0.310 Sum_probs=76.4
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
-.++|||++|+..+-..+|+.||++||.|+. .+++++..+-..++||||++.+...|.+||..|+-+.|. |
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvG--------AKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELH-G 474 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVG--------AKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELH-G 474 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceec--------eeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhc-c
Confidence 5689999999999999999999999999997 999998777778899999999999999999999999997 5
Q ss_pred CCeeEEEecccccccc
Q 009565 367 GKIPMSVTQAKFEQKG 382 (532)
Q Consensus 367 ~~~~I~V~~A~~~~kg 382 (532)
+.|.|.+++...-+
T Consensus 475 --rmISVEkaKNEp~G 488 (940)
T KOG4661|consen 475 --RMISVEKAKNEPGG 488 (940)
T ss_pred --eeeeeeecccCccc
Confidence 66999999875443
No 110
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.37 E-value=5.2e-07 Score=87.84 Aligned_cols=73 Identities=14% Similarity=0.200 Sum_probs=60.4
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCC
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGG 495 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G 495 (532)
+.|||.+| .+- .-++.|+..|++||.|...+|+.+ +++||+||+|++.++|.+|++.. .-.++|
T Consensus 13 TKifVggL---~w~--------T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdG 80 (247)
T KOG0149|consen 13 TKIFVGGL---AWE--------THKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDG 80 (247)
T ss_pred EEEEEcCc---ccc--------cchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccc
Confidence 47999999 332 234689999999999999988865 78999999999999999999864 467899
Q ss_pred eEEEEEeec
Q 009565 496 RQIHASEDD 504 (532)
Q Consensus 496 R~I~V~~~d 504 (532)
|+..|.++.
T Consensus 81 R~aNcnlA~ 89 (247)
T KOG0149|consen 81 RKANCNLAS 89 (247)
T ss_pred cccccchhh
Confidence 998887753
No 111
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=3.3e-06 Score=90.19 Aligned_cols=158 Identities=20% Similarity=0.271 Sum_probs=104.2
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecC-CC--CCccc---cEEEEecCHHHHHHHHHHhC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDK-ET--GMKKG---DALVTYLKEPSVALATQLLD 359 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~-~t--G~~kG---~aFV~F~~~esA~~Al~~Ln 359 (532)
.-.++||||+||++++|+.|...|..||.+. |...... .. -.++| |+|+.|.++.++..-|...-
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~---------VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK---------VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE---------eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 3458899999999999999999999999998 4444211 11 12566 99999999988876543321
Q ss_pred CceecCCCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCC-------CCCCCCCCCcEEEEecccCCcc
Q 009565 360 GTPFRPDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGG-------RDDAKLTIPATVILRFMFTPAE 432 (532)
Q Consensus 360 G~~l~~G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~-------~~~~~~~~~~~v~i~Nlf~p~~ 432 (532)
.. .+..-++|+-..+..+... +..|.- .........+||||..| |..
T Consensus 328 ---~~-~~~~yf~vss~~~k~k~VQ--------------------IrPW~laDs~fv~d~sq~lDprrTVFVGgv--prp 381 (520)
T KOG0129|consen 328 ---EG-EGNYYFKVSSPTIKDKEVQ--------------------IRPWVLADSDFVLDHNQPIDPRRTVFVGGL--PRP 381 (520)
T ss_pred ---hc-ccceEEEEecCccccccee--------------------EEeeEeccchhhhccCcccCccceEEecCC--CCc
Confidence 11 1222344444433222111 011110 01123334569999999 444
Q ss_pred cCcchhhHHHHHHHHHHHhh-ccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHH
Q 009565 433 MRADENLRSELEADVQEECV-KIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIEL 487 (532)
Q Consensus 433 ~~~D~~l~~ei~edLre~fs-kfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~ 487 (532)
+.. ++|-.++. -||.|..|-|..+ -|+|-|-|+|.+-.+=.+||.+
T Consensus 382 l~A---------~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 382 LTA---------EELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred chH---------HHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 422 35556665 6899999999766 6899999999999999999975
No 112
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.4e-07 Score=89.09 Aligned_cols=77 Identities=19% Similarity=0.290 Sum_probs=65.9
Q ss_pred CcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeC
Q 009565 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFG 494 (532)
Q Consensus 419 ~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~ 494 (532)
.++|||..| ..+. ...-|...|-+||.|..|.++-+ +.+||+||+|.-.++|.+||..||+..+.
T Consensus 10 KrtlYVGGl--adeV---------tekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~ 78 (298)
T KOG0111|consen 10 KRTLYVGGL--ADEV---------TEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELF 78 (298)
T ss_pred ceeEEeccc--hHHH---------HHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhc
Confidence 469999999 2221 23357789999999999999865 67999999999999999999999999999
Q ss_pred CeEEEEEeecCC
Q 009565 495 GRQIHASEDDGL 506 (532)
Q Consensus 495 GR~I~V~~~dg~ 506 (532)
||.|+|.|+...
T Consensus 79 GrtirVN~AkP~ 90 (298)
T KOG0111|consen 79 GRTIRVNLAKPE 90 (298)
T ss_pred ceeEEEeecCCc
Confidence 999999998764
No 113
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.35 E-value=7.3e-07 Score=93.02 Aligned_cols=74 Identities=23% Similarity=0.386 Sum_probs=65.4
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
++.|+|||+|||+++|...|++-|..||.|.. ..|+ +.|+++| .|.|.+++.|++||.+|||..|.
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~y--------adim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~- 599 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLY--------ADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLD- 599 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceeh--------hhhh---ccCCccc--eEEecCHHHHHHHHHHhccCccc-
Confidence 46689999999999999999999999999985 7774 4688888 99999999999999999999997
Q ss_pred CCCeeEEEec
Q 009565 366 DGKIPMSVTQ 375 (532)
Q Consensus 366 G~~~~I~V~~ 375 (532)
| +.|+|.+
T Consensus 600 G--r~I~V~y 607 (608)
T KOG4212|consen 600 G--RNIKVTY 607 (608)
T ss_pred C--ceeeeee
Confidence 6 5577754
No 114
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=9.5e-07 Score=90.13 Aligned_cols=80 Identities=21% Similarity=0.254 Sum_probs=73.6
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCC
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~ 367 (532)
-..|||..|.+-+|.++|.-+|+.||+|.+ |.+++|..||-+--||||+|.+.+++++|.-.|++..|. .
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~s--------ceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID-D- 308 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIVS--------CEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID-D- 308 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhccccee--------eeEEecccccchhheeeeeecchhhHHHHHhhhcceeec-c-
Confidence 367999999999999999999999999998 999999999999999999999999999999999999996 3
Q ss_pred CeeEEEecccc
Q 009565 368 KIPMSVTQAKF 378 (532)
Q Consensus 368 ~~~I~V~~A~~ 378 (532)
++|+|.++..
T Consensus 309 -rRIHVDFSQS 318 (479)
T KOG0415|consen 309 -RRIHVDFSQS 318 (479)
T ss_pred -ceEEeehhhh
Confidence 5688877653
No 115
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.30 E-value=2e-06 Score=82.36 Aligned_cols=76 Identities=17% Similarity=0.291 Sum_probs=61.8
Q ss_pred CcEEEEecccCCcccCcchhhHHHHHHHHHHHhhcc-CCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKI-GPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 419 ~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskf-G~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
...+++.++ |..+ .+..+...|..| |+|+++++-++ +++|||||+|.+.+.|.-|-+.||++.|
T Consensus 49 ~g~~~~~~~--p~g~---------~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl 117 (214)
T KOG4208|consen 49 EGVVYVDHI--PHGF---------FETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLL 117 (214)
T ss_pred ccceeeccc--ccch---------hHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhh
Confidence 346777777 3332 233666778777 78888888765 7899999999999999999999999999
Q ss_pred CCeEEEEEeecC
Q 009565 494 GGRQIHASEDDG 505 (532)
Q Consensus 494 ~GR~I~V~~~dg 505 (532)
+|+.|.|.+--.
T Consensus 118 ~e~lL~c~vmpp 129 (214)
T KOG4208|consen 118 MEHLLECHVMPP 129 (214)
T ss_pred hhheeeeEEeCc
Confidence 999999988644
No 116
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.29 E-value=1.3e-06 Score=94.54 Aligned_cols=187 Identities=17% Similarity=0.267 Sum_probs=121.7
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhcc----CccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCc
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKC----GIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGT 361 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~----G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~ 361 (532)
.++..+||+++|+.++++.+..+|..- |--.. -.|.+.+....+ ..+.|||++|.+.+.|..|+ .+++.
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~--~~g~~~~s~~~n----~~~nfa~ie~~s~~~at~~~-~~~~~ 245 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQA--PDGPSFVSVQLN----LEKNFAFIEFRSISEATEAM-ALDGI 245 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccC--CCCCceeeeeec----ccccceeEEecCCCchhhhh-cccch
Confidence 578999999999999999999999742 11111 113334444444 45789999999999999998 68888
Q ss_pred eecCCCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHH
Q 009565 362 PFRPDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRS 441 (532)
Q Consensus 362 ~l~~G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ 441 (532)
.+. | .++++.+......... ....... +......|. ....+..+..+++.+| |..+..+
T Consensus 246 ~f~-g--~~~~~~r~~d~~~~p~----~~~~~~~-----~~~~~~~~~--~t~~~~~~~ki~v~~l--p~~l~~~----- 304 (500)
T KOG0120|consen 246 IFE-G--RPLKIRRPHDYQPVPG----ITLSPSQ-----LGKVGLLPA--STDVPDSPNKIFVGGL--PLYLTED----- 304 (500)
T ss_pred hhC-C--CCceecccccccCCcc----chhhhcc-----ccccCCccc--ccCcccccchhhhccC--cCccCHH-----
Confidence 886 5 4455544331111000 0000000 000000111 1112233456788888 4443322
Q ss_pred HHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeec
Q 009565 442 ELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDD 504 (532)
Q Consensus 442 ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~d 504 (532)
.++++...||.+....++.+ .++||||.+|.++.-...|+..|||..+++++|.|..+-
T Consensus 305 ----q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 305 ----QVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ----HHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 55666677788877777654 678999999999999999999999999999999998763
No 117
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.26 E-value=2.3e-06 Score=85.19 Aligned_cols=78 Identities=24% Similarity=0.406 Sum_probs=68.2
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCC
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~ 367 (532)
.++|+|.|||+.|+.++|+++|..||.+.. +-|-.+ ..|.+.|.|-|.|...++|..|++.|+|..+. |
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r--------~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ld-G- 151 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKR--------VAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALD-G- 151 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceE--------EeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccC-C-
Confidence 488999999999999999999999998774 888888 58999999999999999999999999998886 5
Q ss_pred CeeEEEeccc
Q 009565 368 KIPMSVTQAK 377 (532)
Q Consensus 368 ~~~I~V~~A~ 377 (532)
.+|.+....
T Consensus 152 -~~mk~~~i~ 160 (243)
T KOG0533|consen 152 -RPMKIEIIS 160 (243)
T ss_pred -ceeeeEEec
Confidence 346665543
No 118
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.24 E-value=2.4e-06 Score=94.65 Aligned_cols=74 Identities=22% Similarity=0.408 Sum_probs=65.2
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
-.||||||+||.++++.+|..+|+.||.|.+ |.|+. ++|+|||++....+|.+|+..|+...+. +
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqS--------i~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~-~ 484 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQS--------IILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVA-D 484 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhccccee--------Eeecc------CCceeEEEEeehhHHHHHHHHHhccccc-c
Confidence 3589999999999999999999999999997 87765 4799999999999999999999988885 3
Q ss_pred CCeeEEEeccc
Q 009565 367 GKIPMSVTQAK 377 (532)
Q Consensus 367 ~~~~I~V~~A~ 377 (532)
+.|+|.++.
T Consensus 485 --k~Iki~Wa~ 493 (894)
T KOG0132|consen 485 --KTIKIAWAV 493 (894)
T ss_pred --eeeEEeeec
Confidence 567777764
No 119
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.23 E-value=1.9e-06 Score=77.30 Aligned_cols=74 Identities=19% Similarity=0.300 Sum_probs=63.3
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCC
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGG 495 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G 495 (532)
-.|+|.++ .++ ..+++|.+.|.-||.|+++.|--+ -.+|||.|+|.+.++|++||..|||..+-|
T Consensus 73 wIi~Vtgv--HeE---------atEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~ 141 (170)
T KOG0130|consen 73 WIIFVTGV--HEE---------ATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG 141 (170)
T ss_pred EEEEEecc--Ccc---------hhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC
Confidence 37888888 332 245799999999999999998643 457999999999999999999999999999
Q ss_pred eEEEEEeec
Q 009565 496 RQIHASEDD 504 (532)
Q Consensus 496 R~I~V~~~d 504 (532)
..|.|.|..
T Consensus 142 q~v~VDw~F 150 (170)
T KOG0130|consen 142 QNVSVDWCF 150 (170)
T ss_pred CceeEEEEE
Confidence 999998864
No 120
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.21 E-value=1.8e-06 Score=85.67 Aligned_cols=80 Identities=28% Similarity=0.305 Sum_probs=71.3
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..+.|||+|+.+.+|.+++...|+.||.|.. +.|..|+.+|.+|||+||+|.+.+.+..|+. |||..|. |
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~--------~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~-~ 169 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINR--------VTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP-G 169 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccc--------eeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc-c
Confidence 3477999999999999999999999999985 9999999899999999999999999999997 9999998 5
Q ss_pred CCeeEEEecccc
Q 009565 367 GKIPMSVTQAKF 378 (532)
Q Consensus 367 ~~~~I~V~~A~~ 378 (532)
..|.|.....
T Consensus 170 --~~i~vt~~r~ 179 (231)
T KOG4209|consen 170 --PAIEVTLKRT 179 (231)
T ss_pred --ccceeeeeee
Confidence 5567665543
No 121
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.13 E-value=2.4e-06 Score=88.05 Aligned_cols=79 Identities=30% Similarity=0.425 Sum_probs=68.0
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCC
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~ 367 (532)
..+|||++||.++++.+|+++|.+||.|.. +.++.|..+..++||+||.|.+.+++++++ ...-+.|. |
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~--------~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~-g- 165 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVAD--------VVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFN-G- 165 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEe--------eEEeecccccccccceeeEeccccccceec-ccceeeec-C-
Confidence 357999999999999999999999998885 889999999999999999999999999998 45566665 4
Q ss_pred CeeEEEecccc
Q 009565 368 KIPMSVTQAKF 378 (532)
Q Consensus 368 ~~~I~V~~A~~ 378 (532)
+.+.|.+|..
T Consensus 166 -k~vevkrA~p 175 (311)
T KOG4205|consen 166 -KKVEVKRAIP 175 (311)
T ss_pred -ceeeEeeccc
Confidence 4567777653
No 122
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=6.6e-07 Score=101.26 Aligned_cols=59 Identities=27% Similarity=0.707 Sum_probs=55.6
Q ss_pred CCCccceEEEcCCCcccCCCCHHHHHHHHHcCcccCCccccccCccCcccCCCcchhhh
Q 009565 20 TAGEEGWYILDENQQHVGPYAISELCEHFLNGYLLETTLVWSQGRSEWQPLSSIPQFLS 78 (532)
Q Consensus 20 ~~~~~~Wyy~~~~~~~~GP~~~~~l~~~~~~g~i~~~tlvW~~Gm~~W~p~~~v~eL~~ 78 (532)
.-.+++|||++.+|.++||++.+-++.||....|...|-+|+-||+.|+.++.||||.=
T Consensus 952 ~~~~~ew~y~dk~~~~vgp~~~~~~~sl~s~k~i~~~s~~~a~gm~~w~~l~~i~~~rw 1010 (2235)
T KOG1789|consen 952 QMAEEEWYYHDKDAKQVGPLSFEKMKSLYTEKTIFEKSQIWAAGMDKWMSLAAVPQFRW 1010 (2235)
T ss_pred hcCchhheeecCCccccCchhHHHHHHHhcccchhHHHHHHHhhhhHHHhhhhhhhhhh
Confidence 34678999999999999999999999999999999999999999999999999999943
No 123
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.08 E-value=2.8e-06 Score=95.55 Aligned_cols=163 Identities=17% Similarity=0.207 Sum_probs=122.1
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..+.+||++||+..+++.+|+..|..+|.|.+ |.|-+- .-+.-.-||||.|.+...+-.|+..+.+..|..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~--------VDiKtP-~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~ 440 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEE--------VDIKTP-HIKTESAYAFVSLLNTDMTPSAKFEESGPLIGN 440 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccc--------cccccC-CCCcccchhhhhhhccccCcccchhhcCCcccc
Confidence 36899999999999999999999999999986 776554 245555699999999999999998898888853
Q ss_pred CCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHH
Q 009565 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEA 445 (532)
Q Consensus 366 G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~e 445 (532)
|. .+|.+... .....+.+.+..+ .... + ..
T Consensus 441 g~-~r~glG~~--------------------------------------kst~ttr~~sggl--g~w~--p-------~~ 470 (975)
T KOG0112|consen 441 GT-HRIGLGQP--------------------------------------KSTPTTRLQSGGL--GPWS--P-------VS 470 (975)
T ss_pred Cc-cccccccc--------------------------------------ccccceeeccCCC--CCCC--h-------HH
Confidence 31 22211110 1111234455555 2221 1 13
Q ss_pred HHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCC--eEEEEEeecCCccc
Q 009565 446 DVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGG--RQIHASEDDGLVNH 509 (532)
Q Consensus 446 dLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G--R~I~V~~~dg~~~~ 509 (532)
.+..+|..||.|..|.+- |..-|++|.|.+...|+.|+..|-|..|+| ++|.|.|++.-..+
T Consensus 471 ~l~r~fd~fGpir~Idy~--hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 471 RLNREFDRFGPIRIIDYR--HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred HHHHHhhccCcceeeecc--cCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCCCC
Confidence 677899999999987664 555799999999999999999999999998 78999998775443
No 124
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.05 E-value=8.9e-06 Score=86.93 Aligned_cols=85 Identities=27% Similarity=0.351 Sum_probs=62.9
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|..+|.++|..||.|.. ..|..-.-.++..+||||+|.+..++..||.+- .+..
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~--------~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As---p~~i 354 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKE--------GGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS---PLEI 354 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccc--------cceEEeccCCCcCceEEEEEeecchhhhhhhcC---cccc
Confidence 34566999999999999999999999999996 444432123444499999999999999999754 3332
Q ss_pred CCCeeEEEecccccccc
Q 009565 366 DGKIPMSVTQAKFEQKG 382 (532)
Q Consensus 366 G~~~~I~V~~A~~~~kg 382 (532)
|+ +++.|..-.....+
T Consensus 355 g~-~kl~Veek~~~~~g 370 (419)
T KOG0116|consen 355 GG-RKLNVEEKRPGFRG 370 (419)
T ss_pred CC-eeEEEEeccccccc
Confidence 44 56788765544333
No 125
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.02 E-value=4.3e-06 Score=85.64 Aligned_cols=173 Identities=17% Similarity=0.249 Sum_probs=119.1
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
.-+++||+++..++.+.+...++...|.+.. ..+........++|++++.|...+.+..||. +.+..+..+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~--------~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~~ 157 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVD--------ARSSSLEDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLDG 157 (285)
T ss_pred ccccccccccccchhhccccccchhhcCccc--------chhhhhccccccccceeeccccHHHHHHHHH-hhhcccccc
Confidence 3588999999999999989999999998775 5555444678999999999999999999995 445433212
Q ss_pred CCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEE-EecccCCcccCcchhhHHHHHH
Q 009565 367 GKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVI-LRFMFTPAEMRADENLRSELEA 445 (532)
Q Consensus 367 ~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~-i~Nlf~p~~~~~D~~l~~ei~e 445 (532)
+.....+.... +.. ..+... ......+.+++ +.++ +..+. ++
T Consensus 158 ~~~~~dl~~~~----~~~----------------~~n~~~------~~~~~~s~~~~~~~~~--~f~~~---------~d 200 (285)
T KOG4210|consen 158 NKGEKDLNTRR----GLR----------------PKNKLS------RLSSGPSDTIFFVGEL--DFSLT---------RD 200 (285)
T ss_pred ccccCcccccc----ccc----------------ccchhc------ccccCccccceeeccc--ccccc---------hH
Confidence 21111111000 000 000000 00001122344 6666 33332 23
Q ss_pred HHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCC
Q 009565 446 DVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGL 506 (532)
Q Consensus 446 dLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~ 506 (532)
+|+.+|..+|.|..|+++.. .+.|++||.|.+...+..|+.. ..+.++|+++.+.+.+..
T Consensus 201 ~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 201 DLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred HHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCC
Confidence 67789999999999999876 4578999999999999999988 899999999999887665
No 126
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.01 E-value=1.2e-05 Score=82.18 Aligned_cols=75 Identities=21% Similarity=0.369 Sum_probs=61.4
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHH-HhCCceecC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQ-LLDGTPFRP 365 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~-~LnG~~l~~ 365 (532)
.-++|||+||-..+++.+|+++|-+||.|.+ |.++.. +|+|||+|.+.++|++|.. .+|-..|.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirs--------i~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~- 291 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRS--------IRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVIN- 291 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeee--------EEeecc------cccceeeehhhHHHHHHHHhhcceeeec-
Confidence 4588999999999999999999999999997 888764 5699999999999998775 46655555
Q ss_pred CCCeeEEEecccc
Q 009565 366 DGKIPMSVTQAKF 378 (532)
Q Consensus 366 G~~~~I~V~~A~~ 378 (532)
| .+|.|.....
T Consensus 292 G--~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 292 G--FRLKIKWGRP 302 (377)
T ss_pred c--eEEEEEeCCC
Confidence 6 4567665553
No 127
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.96 E-value=7.3e-06 Score=80.71 Aligned_cols=163 Identities=17% Similarity=0.265 Sum_probs=107.8
Q ss_pred cEEEEECCCCCCCHHH-H--HHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 289 THVYVTGLPDDVTVEE-M--VEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 289 ~~VyV~nLP~~vTeee-L--~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
-..+++++-.++..+- | ...|+.+-.+.. .+++++ .-+...+++|+.|.......++-..-+++.+
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~k--------tk~v~~-~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki-- 165 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVK--------TKLVRD-RPQPIRPEAFESFKASDALLKAETEKEKKKI-- 165 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhh--------hhhhhc-CCCccCcccccCcchhhhhhhhccccccccc--
Confidence 3456676666655544 3 667877777664 677777 4688899999999876666666655566655
Q ss_pred CCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHH
Q 009565 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEA 445 (532)
Q Consensus 366 G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~e 445 (532)
|. ..|+......-. ...+.+|...+ -.|+..-| -.+. +| +
T Consensus 166 ~~-~~VR~a~gtswe---------------------dPsl~ew~~~D-------fRIfcgdl--gNev-nd--------~ 205 (290)
T KOG0226|consen 166 GK-PPVRLAAGTSWE---------------------DPSLAEWDEDD-------FRIFCGDL--GNEV-ND--------D 205 (290)
T ss_pred cC-cceeeccccccC---------------------CcccccCcccc-------ceeecccc--cccc-cH--------H
Confidence 21 223333332110 01234454322 24555555 1121 22 2
Q ss_pred HHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEe
Q 009565 446 DVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASE 502 (532)
Q Consensus 446 dLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~ 502 (532)
-|-..|.+|-.....+++++ +++||+||.|.++.++.+|+..|||++++.|+|.+.-
T Consensus 206 vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 206 VLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred HHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 45678888887777777765 7899999999999999999999999999999987743
No 128
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.93 E-value=1.6e-05 Score=85.48 Aligned_cols=77 Identities=21% Similarity=0.287 Sum_probs=63.3
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
..+++.|..|....- -.||+.+|++||.|+-.+|+.+ -.+.|+||++.+.++|.+||..||-+.+
T Consensus 404 ~gRNlWVSGLSstTR-----------AtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL 472 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTR-----------ATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL 472 (940)
T ss_pred cccceeeeccccchh-----------hhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh
Confidence 455777777722211 1389999999999999999877 2367999999999999999999999999
Q ss_pred CCeEEEEEeecC
Q 009565 494 GGRQIHASEDDG 505 (532)
Q Consensus 494 ~GR~I~V~~~dg 505 (532)
.||.|.|.-+..
T Consensus 473 HGrmISVEkaKN 484 (940)
T KOG4661|consen 473 HGRMISVEKAKN 484 (940)
T ss_pred cceeeeeeeccc
Confidence 999999987643
No 129
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.92 E-value=2.3e-05 Score=87.17 Aligned_cols=76 Identities=18% Similarity=0.323 Sum_probs=66.7
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeE
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQ 497 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~ 497 (532)
.++||+|+.| +.. ..+.||..+|+.||.|.+|.++. ++|||||++.+..+|.+|++.|+...|.++.
T Consensus 420 ~SrTLwvG~i--~k~---------v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~ 486 (894)
T KOG0132|consen 420 CSRTLWVGGI--PKN---------VTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVKVADKT 486 (894)
T ss_pred eeeeeeeccc--cch---------hhHHHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhccccccee
Confidence 4568888888 322 25679999999999999999875 5699999999999999999999999999999
Q ss_pred EEEEeecCC
Q 009565 498 IHASEDDGL 506 (532)
Q Consensus 498 I~V~~~dg~ 506 (532)
|+|.++-|+
T Consensus 487 Iki~Wa~g~ 495 (894)
T KOG0132|consen 487 IKIAWAVGK 495 (894)
T ss_pred eEEeeeccC
Confidence 999998885
No 130
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=1.9e-05 Score=80.88 Aligned_cols=78 Identities=14% Similarity=0.303 Sum_probs=65.5
Q ss_pred CcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCc----EEEEEeCCHHHHHHHHHHHCCcEeC
Q 009565 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQG----VVLVRFKDRKDAQKCIELMNGRWFG 494 (532)
Q Consensus 419 ~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG----~aFV~F~s~eeA~kAi~~LnGr~f~ 494 (532)
..+|||..| ...++| +||.-+|+.||+|.+|.|+++...| ||||+|.+.+++.+|.=.|.+-.++
T Consensus 239 eNVLFVCKL---NPVTtD--------eDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID 307 (479)
T KOG0415|consen 239 ENVLFVCKL---NPVTTD--------EDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID 307 (479)
T ss_pred cceEEEEec---CCcccc--------cchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeec
Confidence 347888887 444555 4777899999999999999885444 8999999999999999999999999
Q ss_pred CeEEEEEeecCCc
Q 009565 495 GRQIHASEDDGLV 507 (532)
Q Consensus 495 GR~I~V~~~dg~~ 507 (532)
.|+|+|.|.-...
T Consensus 308 DrRIHVDFSQSVs 320 (479)
T KOG0415|consen 308 DRRIHVDFSQSVS 320 (479)
T ss_pred cceEEeehhhhhh
Confidence 9999999965543
No 131
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.86 E-value=4.1e-06 Score=80.78 Aligned_cols=68 Identities=26% Similarity=0.341 Sum_probs=62.3
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
..++|||+||...++++-|.++|-..|+|.. |.|..++ .++.| ||||.|.++-++..|+++|||..+.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~k--------v~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~ 75 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYK--------VGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLE 75 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEE--------EeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhc
Confidence 3488999999999999999999999999994 8888874 67777 9999999999999999999999997
No 132
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.86 E-value=0.00011 Score=63.29 Aligned_cols=83 Identities=16% Similarity=0.266 Sum_probs=68.2
Q ss_pred cEEEEECCCCCCCHHHHHHHHhcc--CccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKC--GIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~--G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
|+|.|+|||...|.+.|.+++... |..- .+-|+.|..++.+.|||||-|.+++.|..-.+.++|..+..-
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yD--------F~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~ 73 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYD--------FFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNF 73 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcce--------EEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccC
Confidence 899999999999999999998753 3322 477888888899999999999999999999999999998621
Q ss_pred -CCeeEEEeccccc
Q 009565 367 -GKIPMSVTQAKFE 379 (532)
Q Consensus 367 -~~~~I~V~~A~~~ 379 (532)
..+...|..|..+
T Consensus 74 ~s~Kvc~i~yAriQ 87 (97)
T PF04059_consen 74 NSKKVCEISYARIQ 87 (97)
T ss_pred CCCcEEEEehhHhh
Confidence 2345677777754
No 133
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.85 E-value=2.6e-05 Score=85.92 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=67.3
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecC---CCCCccccEEEEecCHHHHHHHHHHhCCcee
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDK---ETGMKKGDALVTYLKEPSVALATQLLDGTPF 363 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~---~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l 363 (532)
..|+|||+||++.++++.|...|..||+|.+ |+|+.-+ +....+-||||.|.+..+|++|++.|+|..+
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlas--------vKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv 244 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLAS--------VKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV 244 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccc--------eeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee
Confidence 5688999999999999999999999999998 8887543 2334566999999999999999999999999
Q ss_pred cCCCCeeEEEeccc
Q 009565 364 RPDGKIPMSVTQAK 377 (532)
Q Consensus 364 ~~G~~~~I~V~~A~ 377 (532)
+ + +.|++..++
T Consensus 245 ~-~--~e~K~gWgk 255 (877)
T KOG0151|consen 245 M-E--YEMKLGWGK 255 (877)
T ss_pred e-e--eeeeecccc
Confidence 7 4 456665553
No 134
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.80 E-value=0.0001 Score=75.55 Aligned_cols=75 Identities=21% Similarity=0.298 Sum_probs=61.4
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHH-CCcEeCCe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELM-NGRWFGGR 496 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~L-nGr~f~GR 496 (532)
.-++|||+++- +. .++.+|+++|.+||.|.+|++.... |+|||+|.+.++|..|...+ |-..++|+
T Consensus 227 ~I~tLyIg~l~--d~---------v~e~dIrdhFyqyGeirsi~~~~~~--~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 227 SIKTLYIGGLN--DE---------VLEQDIRDHFYQYGEIRSIRILPRK--GCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred ceeEEEecccc--cc---------hhHHHHHHHHhhcCCeeeEEeeccc--ccceeeehhhHHHHHHHHhhcceeeecce
Confidence 44699999992 12 2457999999999999999998754 89999999999999988765 44667999
Q ss_pred EEEEEeecC
Q 009565 497 QIHASEDDG 505 (532)
Q Consensus 497 ~I~V~~~dg 505 (532)
+|.|.+-.+
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999996555
No 135
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.80 E-value=0.00016 Score=77.07 Aligned_cols=79 Identities=24% Similarity=0.362 Sum_probs=61.1
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
....|=+++||+.+|+++|.++|+-.-++.. -|.|+.+ ..|++.|-|||+|.+.+.|++||. -+-..| |
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~-------gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~-rhre~i--G 170 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPD-------GILLPMD-QRGRPTGEAFVQFESQESAEIALG-RHRENI--G 170 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCccccc-------ceeeecc-CCCCcccceEEEecCHHHHHHHHH-HHHHhh--c
Confidence 4466889999999999999999997766553 2777788 478899999999999999999995 344444 4
Q ss_pred CCeeEEEeccc
Q 009565 367 GKIPMSVTQAK 377 (532)
Q Consensus 367 ~~~~I~V~~A~ 377 (532)
++ =|.|-++.
T Consensus 171 hR-YIEvF~Ss 180 (510)
T KOG4211|consen 171 HR-YIEVFRSS 180 (510)
T ss_pred cc-eEEeehhH
Confidence 43 36665554
No 136
>PF02213 GYF: GYF domain; InterPro: IPR003169 The glycine-tyrosine-phenylalanine (GYF) domain is an around 60-amino acid domain which contains a conserved GP[YF]xxxx[MV]xxWxxx[GN]YF motif. It was identified in the human intracellular protein termed CD2 binding protein 2 (CD2BP2), which binds to a site containing two tandem PPPGHR segments within the cytoplasmic region of CD2. Binding experiments and mutational analyses have demonstrated the critical importance of the GYF tripeptide in ligand binding. A GYF domain is also found in several other eukaryotic proteins of unknown function []. It has been proposed that the GYF domain found in these proteins could also be involved in proline-rich sequence recognition []. Resolution of the structure of the CD2BP2 GYF domain by NMR spectroscopy revealed a compact domain with a beta-beta-alpha-beta-beta topology, where the single alpha-helix is tilted away from the twisted, anti-parallel beta-sheet. The conserved residues of the GYF domain create a contiguous patch of predominantly hydrophobic nature which forms an integral part of the ligand-binding site []. There is limited homology within the C-terminal 20-30 amino acids of various GYF domains, supporting the idea that this part of the domain is structurally but not functionally important [].; GO: 0005515 protein binding; PDB: 1SYX_F 1L2Z_A 1GYF_A 1WH2_A 3FMA_C 3K3V_A.
Probab=97.79 E-value=1.7e-05 Score=61.63 Aligned_cols=52 Identities=21% Similarity=0.523 Sum_probs=43.5
Q ss_pred ceEEEcCCCcccCCCCHHHHHHHHHcCcccCCccccccCccCc-ccCCCcchh
Q 009565 25 GWYILDENQQHVGPYAISELCEHFLNGYLLETTLVWSQGRSEW-QPLSSIPQF 76 (532)
Q Consensus 25 ~Wyy~~~~~~~~GP~~~~~l~~~~~~g~i~~~tlvW~~Gm~~W-~p~~~v~eL 76 (532)
-|||.+.+|..+|||+..+|+..+..|.++.+..|++.+-..| .|+..+-+|
T Consensus 2 ~W~Y~d~~g~~qGPf~~~~M~~W~~~gyF~~~l~vr~~~~~~~~~~~~~~~~~ 54 (57)
T PF02213_consen 2 MWYYKDPDGNIQGPFSSEQMQAWYKQGYFPDDLQVRRVDDTQFIDPFGSIDRI 54 (57)
T ss_dssp EEEEESTTS-EEEEEEHHHHHHHHHTTSSTTT-EEEETTSTTT--SSCECCGS
T ss_pred EeEEECCCCCcCCCcCHHHHHHHHHCCCCCCCcEEEEecCCCCcccchhhhhh
Confidence 5999999999999999999999999999999999999987776 666665544
No 137
>cd00072 GYF GYF domain: contains conserved Gly-Tyr-Phe residues; Proline-binding domain in CD2-binding and other proteins. Involved in signaling lymphocyte activity. Also present in other unrelated proteins (mainly unknown) derived from diverse eukaryotic species.
Probab=97.79 E-value=2e-05 Score=61.32 Aligned_cols=51 Identities=24% Similarity=0.492 Sum_probs=46.1
Q ss_pred ccceEEEcCCCcccCCCCHHHHHHHHHcCcccCCcccccc-CccCcccCCCc
Q 009565 23 EEGWYILDENQQHVGPYAISELCEHFLNGYLLETTLVWSQ-GRSEWQPLSSI 73 (532)
Q Consensus 23 ~~~Wyy~~~~~~~~GP~~~~~l~~~~~~g~i~~~tlvW~~-Gm~~W~p~~~v 73 (532)
++-|||.+.+|+-+|||+.++|+..+..|.++.+-+|.+. ....|.||.+|
T Consensus 1 ~~~W~Y~d~~g~vqGPF~~~~M~~W~~~gyF~~~l~vr~~~~~~~f~~l~~~ 52 (57)
T cd00072 1 EVQWFYKDPQGEIQGPFSASQMLQWYQAGYFPDGLQVRRLDNGGEFYTLGDI 52 (57)
T ss_pred CcEEEEECCCCCCcCCcCHHHHHHHHHCCCCCCCeEEEECCCCCCcEEHHHH
Confidence 3569999999999999999999999999999999999999 55789988765
No 138
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.65 E-value=3.8e-05 Score=82.89 Aligned_cols=65 Identities=23% Similarity=0.358 Sum_probs=58.3
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
...+|+|-|||..|+.++|+.+|+.||.|.. |+. +-..+|..||+|.+.-+|+.|++.|++..+.
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~--------ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~ 138 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIRE--------IRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIA 138 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhh--------hhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhh
Confidence 4478999999999999999999999999997 554 4456899999999999999999999999885
No 139
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.57 E-value=0.00047 Score=57.46 Aligned_cols=74 Identities=22% Similarity=0.292 Sum_probs=51.3
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccC-CeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEE
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIG-PVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQI 498 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG-~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I 498 (532)
..|+|.|| |... |+ ..++.-|+.++..+| .|..|. .|.|+|.|.+.+.|.+|.+-|+|..+.|+.|
T Consensus 3 s~L~V~NL--P~~~--d~---~~I~~RL~qLsdNCGGkVl~v~------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI 69 (90)
T PF11608_consen 3 SLLYVSNL--PTNK--DP---SSIKNRLRQLSDNCGGKVLSVS------GGTAILRFPNQEFAERAQKRMEGEDVFGNKI 69 (90)
T ss_dssp EEEEEES----TTS---H---HHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--
T ss_pred cEEEEecC--CCCC--CH---HHHHHHHHHHhhccCCEEEEEe------CCEEEEEeCCHHHHHHHHHhhcccccccceE
Confidence 46899999 4432 33 457788999999988 565552 3789999999999999999999999999999
Q ss_pred EEEeecCC
Q 009565 499 HASEDDGL 506 (532)
Q Consensus 499 ~V~~~dg~ 506 (532)
.|+|.-..
T Consensus 70 ~v~~~~~~ 77 (90)
T PF11608_consen 70 SVSFSPKN 77 (90)
T ss_dssp EEESS--S
T ss_pred EEEEcCCc
Confidence 99987544
No 140
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.46 E-value=0.00035 Score=69.71 Aligned_cols=79 Identities=23% Similarity=0.345 Sum_probs=67.8
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcEeC
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFG 494 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~f~ 494 (532)
.+..|+|.|| +... +.+||+++|..||.++.+-|..+ .+.|.|-|.|...++|.+|++.+||..++
T Consensus 82 ~~~~v~v~NL--~~~V---------~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ld 150 (243)
T KOG0533|consen 82 RSTKVNVSNL--PYGV---------IDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALD 150 (243)
T ss_pred CcceeeeecC--CcCc---------chHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccC
Confidence 3468999999 4444 33599999999999999988765 67799999999999999999999999999
Q ss_pred CeEEEEEeecCCc
Q 009565 495 GRQIHASEDDGLV 507 (532)
Q Consensus 495 GR~I~V~~~dg~~ 507 (532)
|+.+.+.+...-.
T Consensus 151 G~~mk~~~i~~~~ 163 (243)
T KOG0533|consen 151 GRPMKIEIISSPS 163 (243)
T ss_pred CceeeeEEecCcc
Confidence 9999998877653
No 141
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.37 E-value=0.00086 Score=55.95 Aligned_cols=69 Identities=17% Similarity=0.329 Sum_probs=46.2
Q ss_pred cEEEEECCCCCCCHHHH----HHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 289 THVYVTGLPDDVTVEEM----VEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL----~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
+.|||.|||.+.....| +.++..||--+ +.|. .|.|+|.|.+.+.|.+|.+.|+|..+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkV---------l~v~--------~~tAilrF~~~~~A~RA~KRmegEdVf 65 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKV---------LSVS--------GGTAILRFPNQEFAERAQKRMEGEDVF 65 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--E---------EE----------TT-EEEEESSHHHHHHHHHHHTT--SS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEE---------EEEe--------CCEEEEEeCCHHHHHHHHHhhcccccc
Confidence 57999999999887654 56777897543 3331 368999999999999999999999998
Q ss_pred CCCCeeEEEeccc
Q 009565 365 PDGKIPMSVTQAK 377 (532)
Q Consensus 365 ~G~~~~I~V~~A~ 377 (532)
| .+|.|++..
T Consensus 66 -G--~kI~v~~~~ 75 (90)
T PF11608_consen 66 -G--NKISVSFSP 75 (90)
T ss_dssp -S--S--EEESS-
T ss_pred -c--ceEEEEEcC
Confidence 6 458888775
No 142
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.33 E-value=0.00017 Score=78.00 Aligned_cols=74 Identities=20% Similarity=0.376 Sum_probs=62.0
Q ss_pred CCCCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 414 AKLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 414 ~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
.+.....+|+|.|| |..+.. .+|+.+|+.||.|..|..- .+.+|.+||+|-+.-+|++|+++||++.+
T Consensus 70 ~~~~~~~~L~v~nl--~~~Vsn---------~~L~~~f~~yGeir~ir~t-~~~~~~~~v~FyDvR~A~~Alk~l~~~~~ 137 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNL--PRSVSN---------DTLLRIFGAYGEIREIRET-PNKRGIVFVEFYDVRDAERALKALNRREI 137 (549)
T ss_pred cccCccceEEEEec--CCcCCH---------HHHHHHHHhhcchhhhhcc-cccCceEEEEEeehHhHHHHHHHHHHHHh
Confidence 34455679999999 555533 3788999999999996643 35689999999999999999999999999
Q ss_pred CCeEEE
Q 009565 494 GGRQIH 499 (532)
Q Consensus 494 ~GR~I~ 499 (532)
.|++|.
T Consensus 138 ~~~~~k 143 (549)
T KOG4660|consen 138 AGKRIK 143 (549)
T ss_pred hhhhhc
Confidence 999988
No 143
>smart00444 GYF Contains conserved Gly-Tyr-Phe residues. Proline-binding domain in CD2-binding protein. Contains conserved Gly-Tyr-Phe residues.
Probab=97.30 E-value=0.00035 Score=54.17 Aligned_cols=52 Identities=15% Similarity=0.449 Sum_probs=46.9
Q ss_pred ceEEEcCCCcccCCCCHHHHHHHHHcCcccCCccccccCccCcccCCCcchh
Q 009565 25 GWYILDENQQHVGPYAISELCEHFLNGYLLETTLVWSQGRSEWQPLSSIPQF 76 (532)
Q Consensus 25 ~Wyy~~~~~~~~GP~~~~~l~~~~~~g~i~~~tlvW~~Gm~~W~p~~~v~eL 76 (532)
=|+|.+.+|+-+|||+..+|+..+.+|.++.+-.|++.+-+...++..+-.|
T Consensus 2 ~W~Y~d~~~~iqGPf~~~~M~~W~~~gyF~~~l~vr~~~~~~~~~l~~~~~i 53 (56)
T smart00444 2 LWLYKDPDGEIQGPFTASQMSQWYQAGYFPDSLQIKRLNEPPYDTLGDLDRL 53 (56)
T ss_pred EEEEECCCCCEeCCcCHHHHHHHHHCCCCCCCeEEEEcCCCCCCcchhhhhe
Confidence 4999999999999999999999999999999999999999988887766543
No 144
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.29 E-value=0.00099 Score=68.13 Aligned_cols=57 Identities=21% Similarity=0.434 Sum_probs=48.6
Q ss_pred HHHhhccCCeeEEEEeccC-----CCc--EEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeec
Q 009565 448 QEECVKIGPVDSVKVCENH-----PQG--VVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDD 504 (532)
Q Consensus 448 re~fskfG~V~~V~l~~~~-----~kG--~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~d 504 (532)
.+.|.+||.|.+|.|-+.- ..+ -+||+|.+.++|.+||...+|..++||.|++.|-.
T Consensus 138 ~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYGT 201 (480)
T COG5175 138 HEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYGT 201 (480)
T ss_pred hhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEeeecCc
Confidence 4789999999999987652 122 25999999999999999999999999999999843
No 145
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.28 E-value=4.8e-05 Score=79.47 Aligned_cols=153 Identities=16% Similarity=0.223 Sum_probs=107.7
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCCC
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~~ 368 (532)
.++|++||.+.++..+|..+|...-.-.+ + -.|++ .||+||.+.+...+.+|++.|+|..-.-|
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~----g---~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqG-- 65 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGS----G---QFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQG-- 65 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCC----c---ceeee-------cceeeccCCchhhhhhhHHhhchhhhhcC--
Confidence 46999999999999999999975421111 0 12222 48999999999999999999999875535
Q ss_pred eeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHHHHH
Q 009565 369 IPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEADVQ 448 (532)
Q Consensus 369 ~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLr 448 (532)
.++.|.....+. .+ ++.+-|+|+ |+.+ --+-+.
T Consensus 66 kr~e~~~sv~kk---------------qr---------------------srk~Qirni--ppql---------~wevld 98 (584)
T KOG2193|consen 66 KRQEVEHSVPKK---------------QR---------------------SRKIQIRNI--PPQL---------QWEVLD 98 (584)
T ss_pred ceeeccchhhHH---------------HH---------------------hhhhhHhcC--CHHH---------HHHHHH
Confidence 345554333110 00 112445666 3332 123456
Q ss_pred HHhhccCCeeEEEEecc-CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeec
Q 009565 449 EECVKIGPVDSVKVCEN-HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDD 504 (532)
Q Consensus 449 e~fskfG~V~~V~l~~~-~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~d 504 (532)
.+...||+|..|..... ...-+.-|+|.+.+.+..||..|||..|....+.+.|.-
T Consensus 99 ~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 99 SLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred HHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 67789999999876432 334566799999999999999999999999999997753
No 146
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.05 E-value=0.0048 Score=56.83 Aligned_cols=79 Identities=19% Similarity=0.306 Sum_probs=57.6
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEE
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIH 499 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~ 499 (532)
.+|+|.-+. +....+..+...+...|.+.|..||.|.-|++.. +.-+|+|.+..+|.+|+. |+|..++|+.|+
T Consensus 28 aTVvVsv~~--~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaals-~dg~~v~g~~l~ 100 (146)
T PF08952_consen 28 ATVVVSVDS--PSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAALS-LDGIQVNGRTLK 100 (146)
T ss_dssp -EEEEEECS---SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHHH-GCCSEETTEEEE
T ss_pred ceEEEEecC--CCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHHc-cCCcEECCEEEE
Confidence 366666552 1122334455566788999999999999888876 578999999999999996 799999999999
Q ss_pred EEeecC
Q 009565 500 ASEDDG 505 (532)
Q Consensus 500 V~~~dg 505 (532)
|.+...
T Consensus 101 i~LKtp 106 (146)
T PF08952_consen 101 IRLKTP 106 (146)
T ss_dssp EEE---
T ss_pred EEeCCc
Confidence 998665
No 147
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.05 E-value=0.00092 Score=73.89 Aligned_cols=212 Identities=8% Similarity=0.041 Sum_probs=120.8
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCC
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~ 367 (532)
.+.+-+.+++++....+++++|...-.-. +.|..+...+.-.|-++|.|....++.+|++. |-+.+. .
T Consensus 311 ~~y~~~~gm~fn~~~nd~rkfF~g~~~~~---------~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~-~- 378 (944)
T KOG4307|consen 311 KYYNNYKGMEFNNDFNDGRKFFPGRNAQS---------TDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDV-N- 378 (944)
T ss_pred hheeeecccccccccchhhhhcCcccccc---------cchhhhhcCCCcCCceEEEecCcchHHHHHhc-Cchhhh-h-
Confidence 35566679999999999999986432221 44555544455589999999999999999864 333332 2
Q ss_pred CeeEEEecccccccc---hhhhhhh-hchHHHHhHHHHHhhhhcCCCCC-CCCCCCCcEEEEecccCCcccCcchhhHHH
Q 009565 368 KIPMSVTQAKFEQKG---ERFIAKQ-VDSKKKKKLKKVEEKMLGWGGRD-DAKLTIPATVILRFMFTPAEMRADENLRSE 442 (532)
Q Consensus 368 ~~~I~V~~A~~~~kg---~~~~~~~-~~~~~~~k~~k~~~k~~~~~~~~-~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~e 442 (532)
+.+.+..+...... ....... ............-.+...-.+.. .......-+|||..| |... ..
T Consensus 379 -R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~l--P~~t-~~------ 448 (944)
T KOG4307|consen 379 -RPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQL--PVMT-PI------ 448 (944)
T ss_pred -cceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccC--Cccc-cc------
Confidence 55666655422110 0000000 00000000000000000000000 001112238999988 3322 11
Q ss_pred HHHHHHHHhhccCCeeE-EEEe---ccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCCccccc-CCCHHH
Q 009565 443 LEADVQEECVKIGPVDS-VKVC---ENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLVNHAA-IRDLDA 517 (532)
Q Consensus 443 i~edLre~fskfG~V~~-V~l~---~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~~~~~~-~~~~~e 517 (532)
.++...|.+.-.|+. |.|- .+.-++.|||.|..++++..|...-+-.+++-|.|+|. ..++|.. .|...+
T Consensus 449 --~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~---si~~~~m~~ek~~~ 523 (944)
T KOG4307|consen 449 --VPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD---SIADYAMMMEKNGE 523 (944)
T ss_pred --cchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEee---chhhHHHHHHHhHH
Confidence 256677877777766 4443 34667899999999999999999888888898999994 3445554 344455
Q ss_pred HHHHHHHHH
Q 009565 518 EASRLEQFG 526 (532)
Q Consensus 518 e~~Rl~~~~ 526 (532)
..+||.+++
T Consensus 524 ~~~~lq~~~ 532 (944)
T KOG4307|consen 524 QGIKLQQSD 532 (944)
T ss_pred HHHHHhhhh
Confidence 566666654
No 148
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.04 E-value=0.00073 Score=67.28 Aligned_cols=76 Identities=16% Similarity=0.247 Sum_probs=62.7
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
.++.++++|+ .-. .+.+.+..+|+.||.|..|.|..+ +++||+||.|.+.+.+..++. |||..|
T Consensus 100 d~~sv~v~nv---d~~--------~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i 167 (231)
T KOG4209|consen 100 DAPSVWVGNV---DFL--------VTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEI 167 (231)
T ss_pred CCceEEEecc---ccc--------cccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccc
Confidence 3568999998 111 122357889999999998888754 689999999999999999999 999999
Q ss_pred CCeEEEEEeecC
Q 009565 494 GGRQIHASEDDG 505 (532)
Q Consensus 494 ~GR~I~V~~~dg 505 (532)
.|+.|.|+++..
T Consensus 168 ~~~~i~vt~~r~ 179 (231)
T KOG4209|consen 168 PGPAIEVTLKRT 179 (231)
T ss_pred ccccceeeeeee
Confidence 999999998754
No 149
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.04 E-value=0.0012 Score=73.30 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=62.9
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEec-------cCCCcEEEEEeCCHHHHHHHHHHHCC
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCE-------NHPQGVVLVRFKDRKDAQKCIELMNG 490 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~-------~~~kG~aFV~F~s~eeA~kAi~~LnG 490 (532)
..+++|+.|+ ++.+ +...|...|..||+|.+|+|+- .+.+-|+||.|-+..+|++|+..|+|
T Consensus 173 ~TTNlyv~Nl--npsv---------~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg 241 (877)
T KOG0151|consen 173 QTTNLYVGNL--NPSV---------DENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQG 241 (877)
T ss_pred cccceeeecC--Cccc---------cHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcc
Confidence 3468999999 4444 2346778999999999999872 25678999999999999999999999
Q ss_pred cEeCCeEEEEEee
Q 009565 491 RWFGGRQIHASED 503 (532)
Q Consensus 491 r~f~GR~I~V~~~ 503 (532)
..+.+..+++-+.
T Consensus 242 ~iv~~~e~K~gWg 254 (877)
T KOG0151|consen 242 IIVMEYEMKLGWG 254 (877)
T ss_pred eeeeeeeeeeccc
Confidence 9999999988765
No 150
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.01 E-value=0.00042 Score=67.23 Aligned_cols=77 Identities=19% Similarity=0.241 Sum_probs=65.2
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcEeC
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFG 494 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~f~ 494 (532)
..++|+|.||.. ...++-|.++|-.-|+|.+|.|+.. +++ ||||.|.+.-+..-|+++|||-.+.
T Consensus 8 ~drtl~v~n~~~-----------~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~ 75 (267)
T KOG4454|consen 8 MDRTLLVQNMYS-----------GVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLE 75 (267)
T ss_pred hhhHHHHHhhhh-----------hhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhc
Confidence 346899999922 1123567888999999999999865 445 9999999999999999999999999
Q ss_pred CeEEEEEeecCC
Q 009565 495 GRQIHASEDDGL 506 (532)
Q Consensus 495 GR~I~V~~~dg~ 506 (532)
++.|.+.+-.|.
T Consensus 76 ~~e~q~~~r~G~ 87 (267)
T KOG4454|consen 76 EDEEQRTLRCGN 87 (267)
T ss_pred cchhhcccccCC
Confidence 999999999997
No 151
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.00 E-value=0.0028 Score=65.90 Aligned_cols=171 Identities=24% Similarity=0.268 Sum_probs=103.6
Q ss_pred CCCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 285 LKVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 285 ~~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
.+.|+-|-.++||+..+..+|..+|.-.-...- -+-|..+ ..|+-.|.|+|.|.+.+.-++|++.-. .+.
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~g-------g~aKOG~-~qgrRnge~lvrf~d~e~RdlalkRhk--hh~ 126 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANG-------GRALCLN-AQGRRNGEALVRFVDPEGRDLALKRHK--HHM 126 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhcccc-------ceeeeeh-hhhccccceEEEecCchhhhhhhHhhh--hhc
Confidence 356677888899999999999999974433221 0223333 568889999999999999999997422 222
Q ss_pred CCCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCC-CCC--CCcEEEEecccCCcccCcchhhHH
Q 009565 365 PDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDA-KLT--IPATVILRFMFTPAEMRADENLRS 441 (532)
Q Consensus 365 ~G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~-~~~--~~~~v~i~Nlf~p~~~~~D~~l~~ 441 (532)
|. +.|.|-.+.... +. ++......... ..+ ....|.++.| |.+..
T Consensus 127 -g~-ryievYka~ge~----f~-----------------~iagg~s~e~~~flsk~~qvivRmRGL--Pfdat------- 174 (508)
T KOG1365|consen 127 -GT-RYIEVYKATGEE----FL-----------------KIAGGTSNEAAPFLSKENQVIVRMRGL--PFDAT------- 174 (508)
T ss_pred -cC-CceeeeccCchh----he-----------------EecCCccccCCCCCCcccceEEEecCC--CCCcc-------
Confidence 22 446666554211 00 00111111111 111 1225666777 55432
Q ss_pred HHHHHHHHHhh-----ccCC--eeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEE
Q 009565 442 ELEADVQEECV-----KIGP--VDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHA 500 (532)
Q Consensus 442 ei~edLre~fs-----kfG~--V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V 500 (532)
..+|.+.|. .-|+ |..|.-.++++.|-|||.|...++|+.|+.. |...++-|-|.+
T Consensus 175 --~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 175 --ALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred --hHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 237777774 2222 2333333568899999999999999999975 555566665554
No 152
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.97 E-value=0.0018 Score=66.57 Aligned_cols=77 Identities=17% Similarity=0.352 Sum_probs=64.9
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCee--------EEEEecc---CCCcEEEEEeCCHHHHHHHH
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVD--------SVKVCEN---HPQGVVLVRFKDRKDAQKCI 485 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~--------~V~l~~~---~~kG~aFV~F~s~eeA~kAi 485 (532)
...+.|||.|| |.+++.+ .+.++|+++|.|. +|+|+++ +.+|-|.|.|--.++..-|+
T Consensus 132 ~~Nt~VYVsgL--P~DiT~d---------E~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~ 200 (382)
T KOG1548|consen 132 KVNTSVYVSGL--PLDITVD---------EFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAI 200 (382)
T ss_pred ccCceEEecCC--CCcccHH---------HHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHH
Confidence 34557999999 7776554 5668899999775 4677765 67899999999999999999
Q ss_pred HHHCCcEeCCeEEEEEeec
Q 009565 486 ELMNGRWFGGRQIHASEDD 504 (532)
Q Consensus 486 ~~LnGr~f~GR~I~V~~~d 504 (532)
+.|++..|.|+.|+|+-+.
T Consensus 201 ~ilDe~~~rg~~~rVerAk 219 (382)
T KOG1548|consen 201 KILDEDELRGKKLRVERAK 219 (382)
T ss_pred HHhCcccccCcEEEEehhh
Confidence 9999999999999998764
No 153
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.94 E-value=0.0023 Score=70.79 Aligned_cols=68 Identities=26% Similarity=0.442 Sum_probs=62.5
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
+.|-|.|+|++++-++|.++|..|-.+..+ |.|.++ +.|...|.|.|.|.+.+.|..|...|++..|+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~s-------I~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~ 935 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNS-------IRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIR 935 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCc-------eeEeec-CCCCcccceeEeecCHHHHHhhhhccccCccc
Confidence 468899999999999999999999998874 777776 78999999999999999999999999999996
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.92 E-value=0.0019 Score=56.63 Aligned_cols=60 Identities=25% Similarity=0.371 Sum_probs=39.0
Q ss_pred HHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCc-----EeCCeEEEEEeecC
Q 009565 444 EADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGR-----WFGGRQIHASEDDG 505 (532)
Q Consensus 444 ~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr-----~f~GR~I~V~~~dg 505 (532)
.++|++.|+.||.|..|.+.++. ..|||+|.+++.|++|+..+.-. .+.+..+.+..-.|
T Consensus 15 re~iK~~f~~~g~V~yVD~~~G~--~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLeG 79 (105)
T PF08777_consen 15 REDIKEAFSQFGEVAYVDFSRGD--TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLEG 79 (105)
T ss_dssp HHHHHHHT-SS--EEEEE--TT---SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE---H
T ss_pred HHHHHHHHHhcCCcceEEecCCC--CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECCC
Confidence 68999999999999999887643 57999999999999999988644 66677776666555
No 155
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.91 E-value=0.00047 Score=70.75 Aligned_cols=80 Identities=23% Similarity=0.324 Sum_probs=67.3
Q ss_pred CcEEE-EECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 288 NTHVY-VTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 288 ~~~Vy-V~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++| |+||++++++++|+.+|..||.|.. +++..++.+|..+|||||+|.......+++.. +...+. +
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~--------~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~-~ 253 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITS--------VRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIG-G 253 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCccee--------eccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCccc-C
Confidence 34556 9999999999999999999999996 99999999999999999999999999999865 566663 3
Q ss_pred CCeeEEEeccccc
Q 009565 367 GKIPMSVTQAKFE 379 (532)
Q Consensus 367 ~~~~I~V~~A~~~ 379 (532)
+++.+.+....
T Consensus 254 --~~~~~~~~~~~ 264 (285)
T KOG4210|consen 254 --RPLRLEEDEPR 264 (285)
T ss_pred --cccccccCCCC
Confidence 56777666543
No 156
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.85 E-value=0.0015 Score=67.98 Aligned_cols=175 Identities=16% Similarity=0.229 Sum_probs=101.8
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCC---CCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKE---TGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~---tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..|-|.||.+.+|.++++.||.-.|.|.. ++||.... .....-.|||-|.+..++..|-.+-|-..|
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~e--------lrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfv-- 77 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPE--------LRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFV-- 77 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhcccccc--------ccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceee--
Confidence 47999999999999999999999999997 88886432 123456899999999999999854444444
Q ss_pred CCCeeEEEe-cccccccch-hhhhhhhchHHHHhHHHHHhhhhcCCCC-----CCCCCCCC-------------------
Q 009565 366 DGKIPMSVT-QAKFEQKGE-RFIAKQVDSKKKKKLKKVEEKMLGWGGR-----DDAKLTIP------------------- 419 (532)
Q Consensus 366 G~~~~I~V~-~A~~~~kg~-~~~~~~~~~~~~~k~~k~~~k~~~~~~~-----~~~~~~~~------------------- 419 (532)
++ .|.|- ++..-.... .+.... +. ..-..++..++. ......+.
T Consensus 78 dr--aliv~p~~~~~~p~r~af~~l~-~~-------navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kl 147 (479)
T KOG4676|consen 78 DR--ALIVRPYGDEVIPDRFAFVELA-DQ-------NAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKL 147 (479)
T ss_pred ee--eEEEEecCCCCCccHHHHHhcC-cc-------cccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhh
Confidence 43 33333 322111110 000000 00 000001110100 00000011
Q ss_pred ----cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCC
Q 009565 420 ----ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGG 495 (532)
Q Consensus 420 ----~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G 495 (532)
+++++.+| +. .-+..++.+.|..+|.|....+-.....-+|.|.|..-.+...|+. ++|+.|.-
T Consensus 148 eeirRt~~v~sl--~~---------~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~ 215 (479)
T KOG4676|consen 148 EEIRRTREVQSL--IS---------AAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKR 215 (479)
T ss_pred HHHHhhhhhhcc--hh---------hhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhh
Confidence 12222222 00 1233567788999999988776654333467799999999999987 58888773
No 157
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.81 E-value=0.0082 Score=51.81 Aligned_cols=75 Identities=21% Similarity=0.257 Sum_probs=54.2
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeC-
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFG- 494 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~- 494 (532)
+||.|+|+ |..++. ..| .+.|-+.| .|...-+.|+-+ ...|||||.|.+++.|.+-.+.+||+...
T Consensus 2 TTvMirNI--Pn~~t~-~~L----~~~l~~~~--~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~ 72 (97)
T PF04059_consen 2 TTVMIRNI--PNKYTQ-EML----IQILDEHF--KGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPN 72 (97)
T ss_pred eeEEEecC--CCCCCH-HHH----HHHHHHhc--cCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCcccc
Confidence 58999999 666532 222 33444444 477888887754 45799999999999999999999998764
Q ss_pred ---CeEEEEEee
Q 009565 495 ---GRQIHASED 503 (532)
Q Consensus 495 ---GR~I~V~~~ 503 (532)
.+...|+|+
T Consensus 73 ~~s~Kvc~i~yA 84 (97)
T PF04059_consen 73 FNSKKVCEISYA 84 (97)
T ss_pred CCCCcEEEEehh
Confidence 455566554
No 158
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=96.67 E-value=0.0017 Score=63.25 Aligned_cols=67 Identities=16% Similarity=0.248 Sum_probs=54.5
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
+...+|||.||.+++||++|+.+|+.|--... ++|. . ..| ...||++|.+.+.|..|+..|.|..|-
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~--------l~~~-~-~~g--~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHI--------LKIR-A-RGG--MPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceE--------EEEe-c-CCC--cceEeecHHHHHHHHHHHHHhhcceec
Confidence 45578999999999999999999999976552 4543 2 123 348999999999999999999998884
No 159
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.0054 Score=66.65 Aligned_cols=89 Identities=12% Similarity=0.191 Sum_probs=69.0
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcEeC
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFG 494 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~f~ 494 (532)
...+|+|.|+ +-. .+.-+..++.-|..+|+++|+|.++.++.. ..+|+.|++|.+..+|+.|++.|||..|+
T Consensus 57 ~D~vVvv~g~---PvV--~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld 131 (698)
T KOG2314|consen 57 FDSVVVVDGA---PVV--GPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLD 131 (698)
T ss_pred cceEEEECCC---ccc--ChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceec
Confidence 3458888888 222 223346677889999999999999998743 57899999999999999999999998876
Q ss_pred -CeEEEEEeecCCccccc
Q 009565 495 -GRQIHASEDDGLVNHAA 511 (532)
Q Consensus 495 -GR~I~V~~~dg~~~~~~ 511 (532)
.+++.|.....-.+|..
T Consensus 132 knHtf~v~~f~d~eky~s 149 (698)
T KOG2314|consen 132 KNHTFFVRLFKDFEKYES 149 (698)
T ss_pred ccceEEeehhhhHHHhcC
Confidence 57888877655545543
No 160
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.63 E-value=0.0019 Score=63.32 Aligned_cols=70 Identities=21% Similarity=0.379 Sum_probs=60.1
Q ss_pred EEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEE
Q 009565 421 TVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHA 500 (532)
Q Consensus 421 ~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V 500 (532)
.|+|.++ +... -+.||..+|.+||.|..|.+.. ||+||.|.+.-+|.-||..|||+.|.|-.+.|
T Consensus 3 rv~vg~~--~~~~---------~~~d~E~~f~~yg~~~d~~mk~----gf~fv~fed~rda~Dav~~l~~~~l~~e~~vv 67 (216)
T KOG0106|consen 3 RVYIGRL--PYRA---------RERDVERFFKGYGKIPDADMKN----GFGFVEFEDPRDADDAVHDLDGKELCGERLVV 67 (216)
T ss_pred ceeeccc--CCcc---------chhHHHHHHhhccccccceeec----ccceeccCchhhhhcccchhcCceecceeeee
Confidence 5788887 3322 3458999999999999998765 89999999999999999999999999988999
Q ss_pred EeecC
Q 009565 501 SEDDG 505 (532)
Q Consensus 501 ~~~dg 505 (532)
.+..+
T Consensus 68 e~~r~ 72 (216)
T KOG0106|consen 68 EHARG 72 (216)
T ss_pred ecccc
Confidence 99885
No 161
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.61 E-value=0.0052 Score=62.99 Aligned_cols=85 Identities=25% Similarity=0.350 Sum_probs=61.0
Q ss_pred cccCCCCcEEEEECCCCCCCHHHH------HHHHhccCccccCCCCCCCeEEEEecCCC-CCccccE--EEEecCHHHHH
Q 009565 282 WFELKVNTHVYVTGLPDDVTVEEM------VEVFSKCGIIKEDPETKKPRIKIYVDKET-GMKKGDA--LVTYLKEPSVA 352 (532)
Q Consensus 282 ~~~~~~~~~VyV~nLP~~vTeeeL------~elFsk~G~I~~d~~~~~prikl~~d~~t-G~~kG~a--FV~F~~~esA~ 352 (532)
...+-+..-|||-+||+.+-.+++ .++|.+||.|.. |.+-+.... ....+.+ ||+|.+.++|.
T Consensus 108 niRVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~K--------IvvNkkt~s~nst~~h~gvYITy~~kedAa 179 (480)
T COG5175 108 NIRVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKK--------IVVNKKTSSLNSTASHAGVYITYSTKEDAA 179 (480)
T ss_pred cceeeecceeEEecCCCCCCcccccccccchhhhhhccceeE--------EEecccccccccccccceEEEEecchHHHH
Confidence 344446677999999999877763 578999999974 555433211 1123333 99999999999
Q ss_pred HHHHHhCCceecCCCCeeEEEeccc
Q 009565 353 LATQLLDGTPFRPDGKIPMSVTQAK 377 (532)
Q Consensus 353 ~Al~~LnG~~l~~G~~~~I~V~~A~ 377 (532)
+||...+|..+. | +.|+..+..
T Consensus 180 rcIa~vDgs~~D-G--r~lkatYGT 201 (480)
T COG5175 180 RCIAEVDGSLLD-G--RVLKATYGT 201 (480)
T ss_pred HHHHHhcccccc-C--ceEeeecCc
Confidence 999999999996 5 456665543
No 162
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=96.56 E-value=0.0035 Score=67.37 Aligned_cols=74 Identities=19% Similarity=0.355 Sum_probs=60.0
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCC
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGG 495 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G 495 (532)
..|+|+|| |.+... ..|++.|..||.|+...|... ....||||+|.+.++++.||++ +-..++|
T Consensus 289 ~~i~V~nl--P~da~~---------~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~ 356 (419)
T KOG0116|consen 289 LGIFVKNL--PPDATP---------AELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGG 356 (419)
T ss_pred cceEeecC--CCCCCH---------HHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCC
Confidence 35999999 665432 358899999999999888653 2237999999999999999987 5788899
Q ss_pred eEEEEEeecC
Q 009565 496 RQIHASEDDG 505 (532)
Q Consensus 496 R~I~V~~~dg 505 (532)
|+|.|.....
T Consensus 357 ~kl~Veek~~ 366 (419)
T KOG0116|consen 357 RKLNVEEKRP 366 (419)
T ss_pred eeEEEEeccc
Confidence 9999987544
No 163
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.54 E-value=0.0025 Score=65.53 Aligned_cols=69 Identities=19% Similarity=0.348 Sum_probs=61.7
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCc--cccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGI--IKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~--I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
.-.+||+||-+.+|.++|.+.+...|. +.. ++++.++.+|++||||+|...+..++.+-+++|-...|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~d--------mKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iH 150 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFAD--------MKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIH 150 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhh--------hhhhhcccCCcccceEEEEecchHHHHHHHHhcccceec
Confidence 356999999999999999999887775 554 888999899999999999999999999999999988886
No 164
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.46 E-value=0.0019 Score=64.01 Aligned_cols=68 Identities=19% Similarity=0.401 Sum_probs=56.9
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCC--------CCccc----cEEEEecCHHHHHHHHH
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKET--------GMKKG----DALVTYLKEPSVALATQ 356 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~t--------G~~kG----~aFV~F~~~esA~~Al~ 356 (532)
--||+++||+.+...-|+++|+.||.|- ||.|-....+ |.+++ -|.|+|.+...|.++..
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVG--------RvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe 146 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVG--------RVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAE 146 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccc--------eEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999999997 4777655444 33333 37899999999999999
Q ss_pred HhCCceec
Q 009565 357 LLDGTPFR 364 (532)
Q Consensus 357 ~LnG~~l~ 364 (532)
+||+..|.
T Consensus 147 ~Lnn~~Ig 154 (278)
T KOG3152|consen 147 LLNNTPIG 154 (278)
T ss_pred HhCCCccC
Confidence 99999994
No 165
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.42 E-value=0.0053 Score=66.72 Aligned_cols=76 Identities=26% Similarity=0.339 Sum_probs=59.2
Q ss_pred CcEEEEECCCCCC--CH----HHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCc
Q 009565 288 NTHVYVTGLPDDV--TV----EEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGT 361 (532)
Q Consensus 288 ~~~VyV~nLP~~v--Te----eeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~ 361 (532)
.+.|+|-|+|.-- -- .-|..+|+++|.|.. +.++.+. .|..+||.|++|.+..+|..|++.|||.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn--------~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~ 128 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVN--------MYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNGK 128 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccc--------eeeccCc-cCCeeeEEEEEecChhhHHHHHHhcccc
Confidence 3779999998531 12 234678999999986 7777774 5669999999999999999999999999
Q ss_pred eecCCCCeeEEEe
Q 009565 362 PFRPDGKIPMSVT 374 (532)
Q Consensus 362 ~l~~G~~~~I~V~ 374 (532)
.|. ...+..|.
T Consensus 129 ~ld--knHtf~v~ 139 (698)
T KOG2314|consen 129 RLD--KNHTFFVR 139 (698)
T ss_pred eec--ccceEEee
Confidence 995 33444443
No 166
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.36 E-value=0.015 Score=50.55 Aligned_cols=57 Identities=16% Similarity=0.243 Sum_probs=43.3
Q ss_pred HHHHHHhhccCCeeEEE-------------EeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEE-EEEeec
Q 009565 445 ADVQEECVKIGPVDSVK-------------VCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQI-HASEDD 504 (532)
Q Consensus 445 edLre~fskfG~V~~V~-------------l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I-~V~~~d 504 (532)
..|..+|++||+|.... ++ .......|+|.++.+|.+||.. ||+.|+|..+ -|.+.+
T Consensus 20 ~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~--~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~mvGV~~~~ 90 (100)
T PF05172_consen 20 NQVLRHFSSFGTILEHFEVLRSSSGINPYPIP--SGGNWIHITYDNPLSAQRALQK-NGTIFSGSLMVGVKPCD 90 (100)
T ss_dssp HHHHHHHHCCS-EECEEGGG----------E---CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEEEEEEE-H
T ss_pred HHHHHHHHhcceEEEeecccccccccccccCC--CCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEEEEEEEcH
Confidence 36789999999998775 22 2346899999999999999975 9999998654 465543
No 167
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.30 E-value=0.01 Score=64.14 Aligned_cols=66 Identities=24% Similarity=0.339 Sum_probs=60.2
Q ss_pred cCCCCcEEEEECCCCCCCHHHHHHHHh-ccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHH
Q 009565 284 ELKVNTHVYVTGLPDDVTVEEMVEVFS-KCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQL 357 (532)
Q Consensus 284 ~~~~~~~VyV~nLP~~vTeeeL~elFs-k~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~ 357 (532)
.++..+|||||+||.-+|..+|..+|. -||.|. ++-|-+|+.-+.+||-|-|+|.+..+-.+||..
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~--------yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVL--------YVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceE--------EEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 345679999999999999999999999 799998 499999988899999999999999999999963
No 168
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.17 E-value=0.0097 Score=52.11 Aligned_cols=59 Identities=17% Similarity=0.249 Sum_probs=37.2
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCc
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGT 361 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~ 361 (532)
+-|+|.|++..++-++|+++|+.||.|. +|.+.+. . .-|||.|.+.+.|..|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~--------yVD~~~G----~--~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVA--------YVDFSRG----D--TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EE--------EEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcc--------eEEecCC----C--CEEEEEECCcchHHHHHHHHHhc
Confidence 5689999999999999999999999887 3665432 2 26999999999999999866544
No 169
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.86 E-value=0.032 Score=42.68 Aligned_cols=40 Identities=28% Similarity=0.479 Sum_probs=34.2
Q ss_pred HHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHH
Q 009565 444 EADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCI 485 (532)
Q Consensus 444 ~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi 485 (532)
.+.|...|..||.|..+.+... .-+.+|+|.+..+|++|+
T Consensus 14 ~~~vl~~F~~fGeI~~~~~~~~--~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 14 AEEVLEHFASFGEIVDIYVPES--TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHHHHHHhcCCEEEEEcCCC--CcEEEEEECCHHHHHhhC
Confidence 4578889999999999988743 358999999999999985
No 170
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.57 E-value=0.022 Score=43.62 Aligned_cols=52 Identities=25% Similarity=0.355 Sum_probs=41.1
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHH
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALAT 355 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al 355 (532)
+.|-|.|.|++..+ .+..+|..||.|.. +.+. ...-..+|.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~--------~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVD--------IYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEE--------EEcC------CCCcEEEEEECCHHHHHhhC
Confidence 67889999987664 55669999999985 5554 12348999999999999985
No 171
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.56 E-value=0.015 Score=61.48 Aligned_cols=67 Identities=30% Similarity=0.418 Sum_probs=55.3
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEec---CC--CCCc--------cccEEEEecCHHHHHH
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVD---KE--TGMK--------KGDALVTYLKEPSVAL 353 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d---~~--tG~~--------kG~aFV~F~~~esA~~ 353 (532)
+.++|.+-|||.+-.-+-|.++|+.||.|.. |+|..- +. .|.+ +-+|||+|...+.|.+
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~Iks--------IRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~K 301 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKS--------IRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARK 301 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceee--------eeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHH
Confidence 6789999999999999999999999999997 887654 22 2222 4589999999999999
Q ss_pred HHHHhCCc
Q 009565 354 ATQLLDGT 361 (532)
Q Consensus 354 Al~~LnG~ 361 (532)
|.++||..
T Consensus 302 A~e~~~~e 309 (484)
T KOG1855|consen 302 ARELLNPE 309 (484)
T ss_pred HHHhhchh
Confidence 99988543
No 172
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.34 E-value=0.08 Score=45.98 Aligned_cols=79 Identities=24% Similarity=0.294 Sum_probs=50.7
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecC------CCCCccccEEEEecCHHHHHHHHHHhCCc
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDK------ETGMKKGDALVTYLKEPSVALATQLLDGT 361 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~------~tG~~kG~aFV~F~~~esA~~Al~~LnG~ 361 (532)
.+.|.|=|.|+. ....|.+.|++||.|.++ ..+.++. ..-.....-.|.|.++.+|.+|| ..||.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~-------~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~ 76 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEH-------FEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGT 76 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECE-------EGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEe-------ecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCe
Confidence 466889999988 556788999999999871 2111110 00112347899999999999999 58999
Q ss_pred eecCCCCeeEEEeccc
Q 009565 362 PFRPDGKIPMSVTQAK 377 (532)
Q Consensus 362 ~l~~G~~~~I~V~~A~ 377 (532)
.|. +...+-|.+.+
T Consensus 77 i~~--g~~mvGV~~~~ 90 (100)
T PF05172_consen 77 IFS--GSLMVGVKPCD 90 (100)
T ss_dssp EET--TCEEEEEEE-H
T ss_pred EEc--CcEEEEEEEcH
Confidence 995 33556666654
No 173
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.00 E-value=0.014 Score=66.21 Aligned_cols=68 Identities=26% Similarity=0.319 Sum_probs=61.8
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
+..|||+|+|+..|.++++.+|+++|.+.+ ++++.. ..|+++|.|||.|.+..++.+++...++..++
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~--------~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~r 803 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTS--------LRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKR 803 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccc--------cchhhh-hccccccceeccCCCcchhhhhcccchhhhhh
Confidence 577999999999999999999999999997 777777 47999999999999999999999888887776
No 174
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.82 E-value=0.11 Score=43.50 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=44.3
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCC
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDG 360 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG 360 (532)
.-.||+ +|......+|.++|+.||.|. |..+-|. -|||...+.+.|..|+..++-
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~---------VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY---------VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE---------EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE---------EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 445665 999999999999999999998 8888773 699999999999999988864
No 175
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.77 E-value=0.015 Score=57.93 Aligned_cols=67 Identities=25% Similarity=0.352 Sum_probs=55.0
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc-CC--------Cc-------EEEEEeCCHHHHHH
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN-HP--------QG-------VVLVRFKDRKDAQK 483 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~-~~--------kG-------~aFV~F~s~eeA~k 483 (532)
-+|||+|+ |+.+.-. .||++++.||.|-+|.|-+. ++ .| -|.|+|.+...|.+
T Consensus 75 GVvylS~I--Pp~m~~~---------rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~ 143 (278)
T KOG3152|consen 75 GVVYLSNI--PPYMDPV---------RLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKR 143 (278)
T ss_pred eEEEeccC--CCccCHH---------HHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHH
Confidence 38999999 7776322 68999999999999998753 11 11 27999999999999
Q ss_pred HHHHHCCcEeCCeE
Q 009565 484 CIELMNGRWFGGRQ 497 (532)
Q Consensus 484 Ai~~LnGr~f~GR~ 497 (532)
|...|||..++|+.
T Consensus 144 iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 144 IAELLNNTPIGGKK 157 (278)
T ss_pred HHHHhCCCccCCCC
Confidence 99999999999975
No 176
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.44 E-value=0.041 Score=54.86 Aligned_cols=65 Identities=20% Similarity=0.358 Sum_probs=57.6
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCc
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGT 361 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~ 361 (532)
+..|||.||+.-++-+.+.+.|+.||+|.. ..++.| ..++..|-++|.|.+.-.+.+|+...+-.
T Consensus 31 ~a~l~V~nl~~~~sndll~~~f~~fg~~e~--------av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 31 HAELYVVNLMQGASNDLLEQAFRRFGPIER--------AVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREG 95 (275)
T ss_pred cceEEEEecchhhhhHHHHHhhhhcCccch--------heeeec-ccccccccchhhhhcchhHHHHHHHhccC
Confidence 378999999999999999999999999996 666667 67999999999999999999999877433
No 177
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.42 E-value=0.056 Score=51.70 Aligned_cols=88 Identities=19% Similarity=0.150 Sum_probs=52.5
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhc-cCccccCCCCCCCeEEEEec-CCCC-CccccEEEEecCHHHHHHHHHHhCCcee
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSK-CGIIKEDPETKKPRIKIYVD-KETG-MKKGDALVTYLKEPSVALATQLLDGTPF 363 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk-~G~I~~d~~~~~prikl~~d-~~tG-~~kG~aFV~F~~~esA~~Al~~LnG~~l 363 (532)
.+++|.|++||+++|+++|.+.++. ++.... -.++.-... ...+ ..-..|||.|.+.+++..-+..++|..|
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~-----w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWD-----WYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE--------EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccc-----eEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 4578999999999999999887775 554411 001221111 1111 1234699999999999999999999888
Q ss_pred cC--CCCeeEEEeccccc
Q 009565 364 RP--DGKIPMSVTQAKFE 379 (532)
Q Consensus 364 ~~--G~~~~I~V~~A~~~ 379 (532)
.. |...+..|.+|.++
T Consensus 81 ~D~kg~~~~~~VE~Apyq 98 (176)
T PF03467_consen 81 VDSKGNEYPAVVEFAPYQ 98 (176)
T ss_dssp E-TTS-EEEEEEEE-SS-
T ss_pred ECCCCCCcceeEEEcchh
Confidence 63 33345677777764
No 178
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.36 E-value=0.065 Score=58.89 Aligned_cols=78 Identities=15% Similarity=0.273 Sum_probs=65.3
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHh-ccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFS-KCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFs-k~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
.....|||.||-.-.|.-+|++++. .||.|.+ . ..| +.|..|||.|.+.+.|...+.+|+|..+.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee--------~--WmD----kIKShCyV~yss~eEA~atr~AlhnV~WP 507 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEE--------F--WMD----KIKSHCYVSYSSVEEAAATREALHNVQWP 507 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHH--------H--HHH----HhhcceeEecccHHHHHHHHHHHhccccC
Confidence 4557799999999999999999999 7788776 3 334 45779999999999999999999999998
Q ss_pred CCCCeeEEEeccc
Q 009565 365 PDGKIPMSVTQAK 377 (532)
Q Consensus 365 ~G~~~~I~V~~A~ 377 (532)
.++.+.|.+.+..
T Consensus 508 ~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 508 PSNPKHLIADFVR 520 (718)
T ss_pred CCCCceeEeeecc
Confidence 7776777777654
No 179
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.02 E-value=0.26 Score=39.02 Aligned_cols=54 Identities=24% Similarity=0.356 Sum_probs=45.3
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhcc----CccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHh
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKC----GIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLL 358 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~----G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~L 358 (532)
..+|+|.|+. +++.++|+.+|..| ++. +|..+-|. -|-|.|.+.+.|.+||..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~---------~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF---------RIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCc---------eEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3679999995 68999999999999 544 38888884 5889999999999999754
No 180
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=93.60 E-value=0.082 Score=56.15 Aligned_cols=62 Identities=21% Similarity=0.437 Sum_probs=50.1
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc---------C--------CCcEEEEEeCCHHH
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN---------H--------PQGVVLVRFKDRKD 480 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~---------~--------~kG~aFV~F~s~ee 480 (532)
.+++|++.|| |. |. ..+.|.++|+.+|.|..|+|+.. . .+-+|+|+|...+.
T Consensus 230 ~srtivaenL--P~----Dh-----~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~ 298 (484)
T KOG1855|consen 230 PSRTIVAENL--PL----DH-----SYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEA 298 (484)
T ss_pred ccceEEEecC--Cc----ch-----HHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHH
Confidence 4568999999 33 22 33799999999999999999864 1 14579999999999
Q ss_pred HHHHHHHHCC
Q 009565 481 AQKCIELMNG 490 (532)
Q Consensus 481 A~kAi~~LnG 490 (532)
|.+|.+.||-
T Consensus 299 A~KA~e~~~~ 308 (484)
T KOG1855|consen 299 ARKARELLNP 308 (484)
T ss_pred HHHHHHhhch
Confidence 9999999964
No 181
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.43 E-value=0.19 Score=48.52 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=46.8
Q ss_pred HHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHC--CcEeCCeEEEEEeec
Q 009565 443 LEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMN--GRWFGGRQIHASEDD 504 (532)
Q Consensus 443 i~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~Ln--Gr~f~GR~I~V~~~d 504 (532)
.+..|+.+|..|+.+..+...+. -+...|.|.+.+.|.+|...|+ +..|.|..|+|.|..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s--FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS--FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT--TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCC--CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 45789999999999988887764 3679999999999999999999 999999999998874
No 182
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.40 E-value=0.086 Score=60.49 Aligned_cols=78 Identities=23% Similarity=0.267 Sum_probs=65.9
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..++.++|++|++.+....|...|..||.|.. |.+- .|.+ ||+|.|.+...+..|+..|-|..|.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~--------Idy~----hgq~--yayi~yes~~~aq~a~~~~rgap~G- 517 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRI--------IDYR----HGQP--YAYIQYESPPAAQAATHDMRGAPLG- 517 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCccee--------eecc----cCCc--ceeeecccCccchhhHHHHhcCcCC-
Confidence 46789999999999999999999999999984 4442 3443 9999999999999999999999996
Q ss_pred CCCeeEEEecccc
Q 009565 366 DGKIPMSVTQAKF 378 (532)
Q Consensus 366 G~~~~I~V~~A~~ 378 (532)
|..+++.|.++..
T Consensus 518 ~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 518 GPPRRLRVDLASP 530 (975)
T ss_pred CCCcccccccccC
Confidence 5556788887753
No 183
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=93.31 E-value=0.071 Score=55.51 Aligned_cols=78 Identities=23% Similarity=0.385 Sum_probs=60.7
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCee--------EEEEecc----CCCcEEEEEeCCHHHHHHHHHH
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVD--------SVKVCEN----HPQGVVLVRFKDRKDAQKCIEL 487 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~--------~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~ 487 (532)
.+|++.+| +... ...+|...|.++|.|. .|.|+++ .++|-|.|.|.++..|+.||.-
T Consensus 67 ~ti~v~g~--~d~~---------~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~ 135 (351)
T KOG1995|consen 67 ETIFVWGC--PDSV---------CENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEW 135 (351)
T ss_pred ccceeecc--Cccc---------hHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhh
Confidence 47888888 3322 3346777777777664 3444443 6889999999999999999999
Q ss_pred HCCcEeCCeEEEEEeecCCcc
Q 009565 488 MNGRWFGGRQIHASEDDGLVN 508 (532)
Q Consensus 488 LnGr~f~GR~I~V~~~dg~~~ 508 (532)
++++.|.|..|.|.++.-+++
T Consensus 136 ~agkdf~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 136 FAGKDFCGNTIKVSLAERRTG 156 (351)
T ss_pred hccccccCCCchhhhhhhccC
Confidence 999999999999999887763
No 184
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.72 E-value=0.46 Score=43.75 Aligned_cols=54 Identities=26% Similarity=0.383 Sum_probs=44.5
Q ss_pred HHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEee
Q 009565 446 DVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASED 503 (532)
Q Consensus 446 dLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~ 503 (532)
.|....+.||+|.+|.++-. --|.|.|++..+|-+|+.+++. ...|+.++|++-
T Consensus 106 sV~~~Ls~fGpI~SVT~cGr---qsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 106 SVIQRLSVFGPIQSVTLCGR---QSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred HHHHHHHhcCCcceeeecCC---ceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 45566789999999998854 3689999999999999999887 556778888763
No 185
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.52 E-value=0.21 Score=50.96 Aligned_cols=50 Identities=24% Similarity=0.278 Sum_probs=42.2
Q ss_pred HHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEE
Q 009565 446 DVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQI 498 (532)
Q Consensus 446 dLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I 498 (532)
-|..+|++||.|.+.+...+ -.+.+|+|.+.-+|++||.. ||++|+|..+
T Consensus 212 ~vL~~F~~cG~Vvkhv~~~n--gNwMhirYssr~~A~KALsk-ng~ii~g~vm 261 (350)
T KOG4285|consen 212 IVLNLFSRCGEVVKHVTPSN--GNWMHIRYSSRTHAQKALSK-NGTIIDGDVM 261 (350)
T ss_pred HHHHHHHhhCeeeeeecCCC--CceEEEEecchhHHHHhhhh-cCeeeccceE
Confidence 46789999999988876632 35899999999999999985 9999999654
No 186
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.27 E-value=0.16 Score=55.98 Aligned_cols=76 Identities=12% Similarity=0.158 Sum_probs=55.7
Q ss_pred CCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhh-ccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCc-Ee
Q 009565 416 LTIPATVILRFMFTPAEMRADENLRSELEADVQEECV-KIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGR-WF 493 (532)
Q Consensus 416 ~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fs-kfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr-~f 493 (532)
...+.+|+|.||..|..+ -.|+.+.. ..|.|....| ++-+-.|||.|.+.++|...+.+|||- |-
T Consensus 441 ~~~SnvlhI~nLvRPFTl-----------gQLkelL~rtgg~Vee~Wm--DkIKShCyV~yss~eEA~atr~AlhnV~WP 507 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTL-----------GQLKELLGRTGGNVEEFWM--DKIKSHCYVSYSSVEEAAATREALHNVQWP 507 (718)
T ss_pred CCccceEeeecccccchH-----------HHHHHHHhhccCchHHHHH--HHhhcceeEecccHHHHHHHHHHHhccccC
Confidence 345569999999777753 36777777 4556666533 234467999999999999999999994 43
Q ss_pred --CCeEEEEEeec
Q 009565 494 --GGRQIHASEDD 504 (532)
Q Consensus 494 --~GR~I~V~~~d 504 (532)
+++.|.|.|..
T Consensus 508 ~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 508 PSNPKHLIADFVR 520 (718)
T ss_pred CCCCceeEeeecc
Confidence 56778887753
No 187
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=91.54 E-value=0.4 Score=48.02 Aligned_cols=90 Identities=18% Similarity=0.231 Sum_probs=65.9
Q ss_pred HHHHHHHHhCCceecCCCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccC
Q 009565 350 SVALATQLLDGTPFRPDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFT 429 (532)
Q Consensus 350 sA~~Al~~LnG~~l~~G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~ 429 (532)
-|..|-..|+++... | +.+.|.++.. ..|+|.|+
T Consensus 6 ~ae~ak~eLd~~~~~-~--~~lr~rfa~~-----------------------------------------a~l~V~nl-- 39 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPK-G--RSLRVRFAMH-----------------------------------------AELYVVNL-- 39 (275)
T ss_pred HHHHHHHhcCCCCCC-C--CceEEEeecc-----------------------------------------ceEEEEec--
Confidence 355566678999887 5 4577777661 27899998
Q ss_pred CcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcEeC
Q 009565 430 PAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFG 494 (532)
Q Consensus 430 p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~f~ 494 (532)
..-. ..+.+.+.|+.||+|.+.+++-+ ++.|-++|.|...-.|.+|+...+-.-|.
T Consensus 40 ~~~~---------sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~ 98 (275)
T KOG0115|consen 40 MQGA---------SNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFG 98 (275)
T ss_pred chhh---------hhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccc
Confidence 2221 12357799999999988877643 67788999999999999999998644443
No 188
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=90.34 E-value=0.18 Score=50.39 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=48.6
Q ss_pred HHHHHHHh-ccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCCCeeEEEeccc
Q 009565 303 EEMVEVFS-KCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKIPMSVTQAK 377 (532)
Q Consensus 303 eeL~elFs-k~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~~~~I~V~~A~ 377 (532)
++|...|+ +||.|.+ +++-.+ ..-...|-+||.|...++|.+|+..||+..+. | ++|......
T Consensus 83 Ed~f~E~~~kygEiee--------~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~-G--~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEE--------LNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYN-G--RPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhh--------hhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCcccc-C--CcceeeecC
Confidence 34444455 9999997 666655 34567899999999999999999999999996 5 567665544
No 189
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=88.90 E-value=0.2 Score=51.83 Aligned_cols=71 Identities=27% Similarity=0.337 Sum_probs=53.5
Q ss_pred CCCcEEEEECCCCCCCHHHHH---HHHhccCccccCCCCCCCeEEEEecCC--CCC-ccccEEEEecCHHHHHHHHHHhC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMV---EVFSKCGIIKEDPETKKPRIKIYVDKE--TGM-KKGDALVTYLKEPSVALATQLLD 359 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~---elFsk~G~I~~d~~~~~prikl~~d~~--tG~-~kG~aFV~F~~~esA~~Al~~Ln 359 (532)
-...-+||-+||+++-.+.+. +.|.+||.|.. |.+.+++. .+. +-.-++|+|...++|..||...+
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~k--------i~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~ 146 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINK--------IVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVD 146 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceE--------EeecCCcccccCCCCCCcccccccchHhhhhHHHHhh
Confidence 355679999999887666553 57899999986 77777652 111 11238999999999999999988
Q ss_pred Cceec
Q 009565 360 GTPFR 364 (532)
Q Consensus 360 G~~l~ 364 (532)
|..+.
T Consensus 147 g~~~d 151 (327)
T KOG2068|consen 147 GFVDD 151 (327)
T ss_pred hHHhh
Confidence 88775
No 190
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.28 E-value=1.5 Score=35.14 Aligned_cols=52 Identities=19% Similarity=0.367 Sum_probs=40.5
Q ss_pred HHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEE
Q 009565 444 EADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHA 500 (532)
Q Consensus 444 ~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V 500 (532)
-++++..+.+|+-.. |. .+..|| ||-|.+..+|.+|....||+.|.+-+|.+
T Consensus 14 v~d~K~~Lr~y~~~~-I~---~d~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 14 VEDFKKRLRKYRWDR-IR---DDRTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred HHHHHHHHhcCCcce-EE---ecCCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 358888888888432 33 233464 89999999999999999999999887764
No 191
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=88.20 E-value=1.6 Score=40.48 Aligned_cols=68 Identities=19% Similarity=0.228 Sum_probs=46.1
Q ss_pred cEEEEECCCC-----CCCH----HHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhC
Q 009565 289 THVYVTGLPD-----DVTV----EEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLD 359 (532)
Q Consensus 289 ~~VyV~nLP~-----~vTe----eeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~Ln 359 (532)
.+|.|+=+.+ ..-. .+|.+.|+.||.+.- |+++-+ .-+|+|.+-++|-+|+ .|+
T Consensus 28 aTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvL--------vRfv~~--------~mwVTF~dg~sALaal-s~d 90 (146)
T PF08952_consen 28 ATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVL--------VRFVGD--------TMWVTFRDGQSALAAL-SLD 90 (146)
T ss_dssp -EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECE--------EEEETT--------CEEEEESSCHHHHHHH-HGC
T ss_pred ceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEE--------EEEeCC--------eEEEEECccHHHHHHH-ccC
Confidence 5666765541 1222 367788899998774 666543 6899999999999999 599
Q ss_pred CceecCCCCeeEEEecc
Q 009565 360 GTPFRPDGKIPMSVTQA 376 (532)
Q Consensus 360 G~~l~~G~~~~I~V~~A 376 (532)
|..+. | +.|+|..-
T Consensus 91 g~~v~-g--~~l~i~LK 104 (146)
T PF08952_consen 91 GIQVN-G--RTLKIRLK 104 (146)
T ss_dssp CSEET-T--EEEEEEE-
T ss_pred CcEEC-C--EEEEEEeC
Confidence 99996 5 55666543
No 192
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.00 E-value=1.1 Score=45.65 Aligned_cols=55 Identities=20% Similarity=0.188 Sum_probs=44.0
Q ss_pred HHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCcc-ccEEEEecCHHHHHHHHHHhCCceec
Q 009565 302 VEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKK-GDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 302 eeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~k-G~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
++++++-+.+||.|.. |.|+..+..-... ---||+|...++|-+|+-.|||..|.
T Consensus 300 ede~keEceKyg~V~~--------viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG 355 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGN--------VIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG 355 (378)
T ss_pred HHHHHHHHHhhcceee--------EEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec
Confidence 4678889999999985 8887765322222 24799999999999999999999994
No 193
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=87.61 E-value=0.44 Score=53.32 Aligned_cols=62 Identities=19% Similarity=0.181 Sum_probs=53.5
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
...-+|||+|+...+..+-++.+...||.|.+ ++... ||||.|.+.....+|+..+.-..+.
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s--------~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~ 99 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPS--------WKRDK---------FGFCEFLKHIGDLRASRLLTELNID 99 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchh--------hhhhh---------hcccchhhHHHHHHHHHHhcccCCC
Confidence 45578999999999999999999999999986 33321 9999999999999999998888775
No 194
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=87.57 E-value=0.21 Score=51.77 Aligned_cols=59 Identities=22% Similarity=0.400 Sum_probs=49.4
Q ss_pred HHHhhccCCeeEEEEeccC----CCc---EEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCC
Q 009565 448 QEECVKIGPVDSVKVCENH----PQG---VVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGL 506 (532)
Q Consensus 448 re~fskfG~V~~V~l~~~~----~kG---~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~ 506 (532)
.+.|.+||.|.+|.+..+. +.| -++|+|...++|..||...+|..++||.|++++-+.+
T Consensus 98 ~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~gttk 163 (327)
T KOG2068|consen 98 TEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASLGTTK 163 (327)
T ss_pred cccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhhCCCc
Confidence 3678899999999988753 111 2899999999999999999999999999998886543
No 195
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=84.89 E-value=7.6 Score=34.33 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=48.8
Q ss_pred CcEEEEECCCCCC-CHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 288 NTHVYVTGLPDDV-TVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 288 ~~~VyV~nLP~~v-TeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
++.|.|=-.|+.+ +-+.|..+.+.+-...+ .++|++|. ..++=.+++.|.+..+|+.-...+||+.|.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~-------~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIE-------HIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEE-------EEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3555555555554 55566666666654443 38999872 235567999999999999999999999996
No 196
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=84.36 E-value=3.5 Score=32.73 Aligned_cols=55 Identities=20% Similarity=0.292 Sum_probs=40.7
Q ss_pred CcEEEEecccCCcccCcchhhHHHHHHHHHHHhhcc---CCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHH
Q 009565 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKI---GPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELM 488 (532)
Q Consensus 419 ~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskf---G~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~L 488 (532)
+..|+|+++ .++.++ ||+..|..| ....+|.-+++. -|-|-|.+.+.|.+|+.+|
T Consensus 5 peavhirGv---d~lsT~---------dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV---DELSTD---------DIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC---CCCCHH---------HHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 347888887 555443 788888877 234577777765 4679999999999999865
No 197
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=81.87 E-value=2 Score=45.44 Aligned_cols=75 Identities=12% Similarity=0.210 Sum_probs=54.8
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc-------CCCcEEEEEeCCHHHHHHHHHHHCCcE
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN-------HPQGVVLVRFKDRKDAQKCIELMNGRW 492 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~-------~~kG~aFV~F~s~eeA~kAi~~LnGr~ 492 (532)
.+|.|.|| .+. ...+.+..+|..+|.|..+.|+.+ ...-+|||.|.+...+..|.. |.++.
T Consensus 8 ~vIqvani--sps---------at~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntv 75 (479)
T KOG4676|consen 8 GVIQVANI--SPS---------ATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTV 75 (479)
T ss_pred ceeeeccc--Cch---------hhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccce
Confidence 37888888 222 245688899999999999999874 123589999999999998875 56666
Q ss_pred eCCeEEEEEe-ecCC
Q 009565 493 FGGRQIHASE-DDGL 506 (532)
Q Consensus 493 f~GR~I~V~~-~dg~ 506 (532)
|-++-|.|.. .++.
T Consensus 76 fvdraliv~p~~~~~ 90 (479)
T KOG4676|consen 76 FVDRALIVRPYGDEV 90 (479)
T ss_pred eeeeeEEEEecCCCC
Confidence 6666665544 4443
No 198
>KOG1862 consensus GYF domain containing proteins [General function prediction only]
Probab=80.47 E-value=1.7 Score=50.15 Aligned_cols=62 Identities=24% Similarity=0.408 Sum_probs=52.9
Q ss_pred CCccceEEEcCCCcccCCCCHHHHHHHHHcCcccCCccccccCccC---cccCCCcchhhhcccc
Q 009565 21 AGEEGWYILDENQQHVGPYAISELCEHFLNGYLLETTLVWSQGRSE---WQPLSSIPQFLSGISQ 82 (532)
Q Consensus 21 ~~~~~Wyy~~~~~~~~GP~~~~~l~~~~~~g~i~~~tlvW~~Gm~~---W~p~~~v~eL~~~~~~ 82 (532)
..+.=|||.+..|+-+|||+..++..++..|+...+..||..--.. -..|+.+.++......
T Consensus 201 ~~d~~~~Y~DP~g~iqGPf~~~~v~~W~~~GyF~~~l~vr~~e~~~~~~f~tl~~~~~~l~~~~~ 265 (673)
T KOG1862|consen 201 DEELSWLYKDPQGQIQGPFSASDVLQWYEAGYFPDDLQVRLGENPERSIFQTLGEVMQLLKTRTG 265 (673)
T ss_pred CcceeEEeeCCCCcccCCchHHHHHHHHhcCccCCCceeeeccCCccccceehhhhhhhcccccC
Confidence 3678899999999999999999999999999999998888777777 7888888877665433
No 199
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=77.64 E-value=1.7 Score=47.05 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=51.2
Q ss_pred HHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecC
Q 009565 443 LEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDG 505 (532)
Q Consensus 443 i~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg 505 (532)
...+|...|.+||.|..|.|-.. ---|.|+|.+..+|-+|.. .+|..|++|.|+|.+...
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~--~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYS--SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hHhhhhhhhhhcCccccccccCc--hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 45789999999999999988654 2358999999999988775 599999999999988766
No 200
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=75.86 E-value=7.2 Score=42.20 Aligned_cols=82 Identities=13% Similarity=0.208 Sum_probs=62.9
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccC-ccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC-
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCG-IIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP- 365 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G-~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~- 365 (532)
++.|+|-.+|..+|--+|..|+..|- .|.. |+|+||.. .++=..+|.|.+.++|..-...+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~--------irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~l 143 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISD--------IRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNSL 143 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhhe--------eEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCCC
Confidence 68899999999999999999998664 4554 99999732 223358999999999999999999999962
Q ss_pred --CCCeeEEEeccccc
Q 009565 366 --DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 --G~~~~I~V~~A~~~ 379 (532)
..-..|.|.+..+.
T Consensus 144 e~e~Chll~V~~ve~~ 159 (493)
T KOG0804|consen 144 EPEVCHLLYVDRVEVT 159 (493)
T ss_pred CccceeEEEEEEEEEE
Confidence 11234566655544
No 201
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=74.92 E-value=9.8 Score=39.25 Aligned_cols=70 Identities=23% Similarity=0.357 Sum_probs=51.2
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCC
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~ 367 (532)
.+.|-|=++|+.-+ .-|..+|++||.|.. . +.- .+|+ +-+|.|.+.-.|++|| ..||+.|. +
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvk--------h--v~~-~ngN---wMhirYssr~~A~KAL-skng~ii~--g 258 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVK--------H--VTP-SNGN---WMHIRYSSRTHAQKAL-SKNGTIID--G 258 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeee--------e--ecC-CCCc---eEEEEecchhHHHHhh-hhcCeeec--c
Confidence 35577778887643 567789999999974 2 211 2333 8999999999999999 58999995 4
Q ss_pred CeeEEEec
Q 009565 368 KIPMSVTQ 375 (532)
Q Consensus 368 ~~~I~V~~ 375 (532)
...|-|.+
T Consensus 259 ~vmiGVkp 266 (350)
T KOG4285|consen 259 DVMIGVKP 266 (350)
T ss_pred ceEEeeee
Confidence 45566655
No 202
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=73.85 E-value=9.4 Score=32.20 Aligned_cols=42 Identities=14% Similarity=0.278 Sum_probs=34.7
Q ss_pred HHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCC
Q 009565 445 ADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNG 490 (532)
Q Consensus 445 edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnG 490 (532)
.||.++|+.||.|. |.-+.+ .-|||...+.+.|..++..++-
T Consensus 23 ~DI~qlFspfG~I~-VsWi~d---TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 23 SDIYQLFSPFGQIY-VSWIND---TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp HHHHHHCCCCCCEE-EEEECT---TEEEEEECCCHHHHHHHHHHTT
T ss_pred hhHHHHhccCCcEE-EEEEcC---CcEEEEeecHHHHHHHHHHhcc
Confidence 48999999999986 444443 5799999999999999998863
No 203
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=73.49 E-value=2.5 Score=48.70 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=66.7
Q ss_pred cEEEEecccCCcccCcch-hhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEe--CCe
Q 009565 420 ATVILRFMFTPAEMRADE-NLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWF--GGR 496 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~-~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f--~GR 496 (532)
.++-|.|+|+......-. ......-.-|..+|+.||.|.+....++- ..|.|.|.+.+.|..|+.+|+|+.+ -|-
T Consensus 287 n~isisnv~plqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~--N~alvs~~s~~sai~a~dAl~gkevs~~g~ 364 (1007)
T KOG4574|consen 287 NTISISNVFPLQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL--NMALVSFSSVESAILALDALQGKEVSVTGA 364 (1007)
T ss_pred CcceecccccCcchhhhhcccccchHHHHHHHHHhhcchhhheecccc--cchhhhhHHHHHHHHhhhhhcCCcccccCC
Confidence 367788887754421111 01122335688999999999999987653 5799999999999999999999865 688
Q ss_pred EEEEEeecCCccccc
Q 009565 497 QIHASEDDGLVNHAA 511 (532)
Q Consensus 497 ~I~V~~~dg~~~~~~ 511 (532)
+.+|.++.-...|.+
T Consensus 365 Ps~V~~ak~~~~~ep 379 (1007)
T KOG4574|consen 365 PSRVSFAKTLPMYEP 379 (1007)
T ss_pred ceeEEeccccccccC
Confidence 899999877666654
No 204
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=73.38 E-value=2.2 Score=49.16 Aligned_cols=75 Identities=23% Similarity=0.231 Sum_probs=60.5
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCCC
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~~ 368 (532)
.+.++.|.+-..|-.-|..+|++||.|.+ ++..++- -.|+|.|...++|-.|+..|.|+++..-+
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s--------~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g- 363 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVAS--------AWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTG- 363 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhh--------heecccc------cchhhhhHHHHHHHHhhhhhcCCcccccC-
Confidence 34566777778888999999999999997 8877762 37999999999999999999999876311
Q ss_pred eeEEEecccc
Q 009565 369 IPMSVTQAKF 378 (532)
Q Consensus 369 ~~I~V~~A~~ 378 (532)
.+.+|..|+.
T Consensus 364 ~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 364 APSRVSFAKT 373 (1007)
T ss_pred CceeEEeccc
Confidence 4577777653
No 205
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=72.06 E-value=4.7 Score=37.27 Aligned_cols=58 Identities=17% Similarity=0.330 Sum_probs=43.2
Q ss_pred cEEEEECCCCCCC----HHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCc
Q 009565 289 THVYVTGLPDDVT----VEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGT 361 (532)
Q Consensus 289 ~~VyV~nLP~~vT----eeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~ 361 (532)
.+|.|+=|..++. -..+...++.||+|.+ |.+. | +-.|.|+|.+..+|-+|+.++...
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~S--------VT~c-----G--rqsavVvF~d~~SAC~Av~Af~s~ 148 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQS--------VTLC-----G--RQSAVVVFKDITSACKAVSAFQSR 148 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcce--------eeec-----C--CceEEEEehhhHHHHHHHHhhcCC
Confidence 6788887766653 2344556789999997 6553 2 237999999999999999988764
No 206
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=71.78 E-value=8.7 Score=33.97 Aligned_cols=40 Identities=23% Similarity=0.538 Sum_probs=33.8
Q ss_pred CeeEEEEecc--CCCcEEEEEeCCHHHHHHHHHHHCCcEeCC
Q 009565 456 PVDSVKVCEN--HPQGVVLVRFKDRKDAQKCIELMNGRWFGG 495 (532)
Q Consensus 456 ~V~~V~l~~~--~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G 495 (532)
.|..++|+++ ..+-.+.++|.+...|..-....||+.|..
T Consensus 40 ~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 40 DIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred cEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 5778888876 334569999999999999999999999865
No 207
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=70.73 E-value=13 Score=38.04 Aligned_cols=50 Identities=16% Similarity=0.241 Sum_probs=39.4
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCH
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKE 348 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~ 348 (532)
.-.+-|||+|||.++-..+|+..+.+.|.+. +.|... .+.|-||+.|-+.
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~p---------m~iswk----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTP---------MSISWK----GHFGKCFLHFGNR 377 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCc---------eeEeee----cCCcceeEecCCc
Confidence 3457799999999999999999999888766 444432 3468899999764
No 208
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=70.57 E-value=12 Score=30.20 Aligned_cols=43 Identities=19% Similarity=0.465 Sum_probs=25.7
Q ss_pred CeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEee
Q 009565 456 PVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASED 503 (532)
Q Consensus 456 ~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~ 503 (532)
.|-+|.|.++ |+||+-.. +.|..++..|++..+.|++|.|+.+
T Consensus 32 ~IG~I~I~~~----~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 32 DIGRIDIFDN----FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GEEEEEE-SS-----EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred hEEEEEEeee----EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 5677888763 67777654 4788999999999999999999753
No 209
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=68.45 E-value=15 Score=29.80 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=37.8
Q ss_pred EEEEECCC--CCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCC
Q 009565 290 HVYVTGLP--DDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (532)
Q Consensus 290 ~VyV~nLP--~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~ 367 (532)
++|| |+- ..++..+|..++...+.|.. ...=+|.|..+ |+||+-.. +.+..++..|++..+. |
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~---~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~-g- 66 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPG---RDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIK-G- 66 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-G---GGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SS-S-
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCH---HhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCC-C-
Confidence 4555 343 35788899999887655542 11113555543 89998866 4788999999999997 5
Q ss_pred CeeEEEecc
Q 009565 368 KIPMSVTQA 376 (532)
Q Consensus 368 ~~~I~V~~A 376 (532)
+++.|+.|
T Consensus 67 -k~v~ve~A 74 (74)
T PF03880_consen 67 -KKVRVERA 74 (74)
T ss_dssp -----EEE-
T ss_pred -eeEEEEEC
Confidence 56777654
No 210
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=63.30 E-value=14 Score=35.38 Aligned_cols=64 Identities=14% Similarity=0.248 Sum_probs=40.3
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhc-cCCe---eEEEE-ecc-----CCCcEEEEEeCCHHHHHHHHHHHC
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVK-IGPV---DSVKV-CEN-----HPQGVVLVRFKDRKDAQKCIELMN 489 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fsk-fG~V---~~V~l-~~~-----~~kG~aFV~F~s~eeA~kAi~~Ln 489 (532)
..|+|++| |+.++.+ ++.+.++. ++.- ..+.- ... .....|||.|.+.++...-+..++
T Consensus 8 ~KvVIR~L--PP~Ltee---------eF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~ 76 (176)
T PF03467_consen 8 TKVVIRRL--PPNLTEE---------EFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFD 76 (176)
T ss_dssp -EEEEEEE---TTS-HH---------HHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCT
T ss_pred ceEEEeCC--CCCCCHH---------HHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcC
Confidence 48999999 8877443 34444444 5554 23321 111 223569999999999999999999
Q ss_pred CcEeC
Q 009565 490 GRWFG 494 (532)
Q Consensus 490 Gr~f~ 494 (532)
|..|-
T Consensus 77 g~~F~ 81 (176)
T PF03467_consen 77 GHVFV 81 (176)
T ss_dssp TEEEE
T ss_pred CcEEE
Confidence 98773
No 211
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=63.26 E-value=17 Score=35.03 Aligned_cols=60 Identities=23% Similarity=0.227 Sum_probs=41.6
Q ss_pred CHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhC--CceecCCCCeeEEEeccc
Q 009565 301 TVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLD--GTPFRPDGKIPMSVTQAK 377 (532)
Q Consensus 301 TeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~Ln--G~~l~~G~~~~I~V~~A~ 377 (532)
....|+++|..++.+.. +..++ +-+-..|.|.+.+.|.+|...|+ +..+. | ..+++.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~--------~~~L~------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~-g--~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQ--------FSPLK------SFRRIRVVFESPESAQRARQLLHWDGTSFN-G--KRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-E--------EEEET------TTTEEEEE-SSTTHHHHHHHTST--TSEET-T--EE-EEE---
T ss_pred hHHHHHHHHHhcCCceE--------EEEcC------CCCEEEEEeCCHHHHHHHHHHhcccccccC-C--CceEEEEcc
Confidence 45789999999999885 54443 23458999999999999999999 89997 5 447776664
No 212
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=61.79 E-value=6.9 Score=34.92 Aligned_cols=60 Identities=13% Similarity=0.186 Sum_probs=26.3
Q ss_pred CcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc-CCCcEEEEEeCCHHH
Q 009565 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN-HPQGVVLVRFKDRKD 480 (532)
Q Consensus 419 ~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~-~~kG~aFV~F~s~ee 480 (532)
|.+++|.|+. .+..++....-..-+.|++.|+.|..++-..+... ...|++.|.|.+.-.
T Consensus 8 PwmgIi~N~~--~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 8 PWMGIIVNIP--TEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWS 68 (116)
T ss_dssp S-EEEEE------EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHH
T ss_pred CCEEEEEcCc--cccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChH
Confidence 4589999993 33222221111222466777777888753333322 346899999997433
No 213
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=59.89 E-value=12 Score=36.05 Aligned_cols=60 Identities=12% Similarity=0.125 Sum_probs=45.0
Q ss_pred HHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCe-EEEEEeecC
Q 009565 444 EADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGR-QIHASEDDG 505 (532)
Q Consensus 444 ~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR-~I~V~~~dg 505 (532)
+.+...+|..|-...-..+++ +.+++-|.|.+++.|..|...++++.|.|. .+.+.|+..
T Consensus 29 k~~~~~lFrq~n~~~~fq~lr--sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 29 KALFENLFRQINEDATFQLLR--SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred HHHHHhHHhhhCcchHHHHHH--hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 345556666555554444444 457889999999999999999999999998 777777654
No 214
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=55.71 E-value=18 Score=40.23 Aligned_cols=71 Identities=24% Similarity=0.265 Sum_probs=51.6
Q ss_pred CcEEEEecccCCcccCcchhhHHHHHHHHHHHhh--ccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCC--cEeC
Q 009565 419 PATVILRFMFTPAEMRADENLRSELEADVQEECV--KIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNG--RWFG 494 (532)
Q Consensus 419 ~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fs--kfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnG--r~f~ 494 (532)
.++|+|+.| +... -.|+|+.+|. .+-.+++|.+-.+. -=||+|.+..+|+.|.+.|.- ..|.
T Consensus 175 RcIvilREI--pett---------p~e~Vk~lf~~encPk~iscefa~N~---nWyITfesd~DAQqAykylreevk~fq 240 (684)
T KOG2591|consen 175 RCIVILREI--PETT---------PIEVVKALFKGENCPKVISCEFAHND---NWYITFESDTDAQQAYKYLREEVKTFQ 240 (684)
T ss_pred eeEEEEeec--CCCC---------hHHHHHHHhccCCCCCceeeeeeecC---ceEEEeecchhHHHHHHHHHHHHHhhc
Confidence 346677777 2221 2367888885 46678888775543 259999999999999999976 5788
Q ss_pred CeEEEEEee
Q 009565 495 GRQIHASED 503 (532)
Q Consensus 495 GR~I~V~~~ 503 (532)
|++|.+.+.
T Consensus 241 gKpImARIK 249 (684)
T KOG2591|consen 241 GKPIMARIK 249 (684)
T ss_pred Ccchhhhhh
Confidence 988887664
No 215
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=55.18 E-value=14 Score=38.89 Aligned_cols=71 Identities=14% Similarity=0.228 Sum_probs=52.5
Q ss_pred EEEEecccCCcccCcchhhHHHHHHHHHHHhhccC--CeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeC
Q 009565 421 TVILRFMFTPAEMRADENLRSELEADVQEECVKIG--PVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFG 494 (532)
Q Consensus 421 ~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG--~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~ 494 (532)
++||.|| -+.++|..|+ +.....| .+..++++.+ .++|||.|-..+..+.++-++.|--+.+.
T Consensus 82 ~~YvGNL---~W~TTD~DL~--------~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iH 150 (498)
T KOG4849|consen 82 CCYVGNL---LWYTTDADLL--------KALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIH 150 (498)
T ss_pred EEEecce---eEEeccHHHH--------HHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceec
Confidence 8999999 5666776544 3333333 3455566644 68999999999999999999999999999
Q ss_pred CeEEEEEe
Q 009565 495 GRQIHASE 502 (532)
Q Consensus 495 GR~I~V~~ 502 (532)
|..-.|.-
T Consensus 151 GQ~P~V~~ 158 (498)
T KOG4849|consen 151 GQSPTVLS 158 (498)
T ss_pred CCCCeeec
Confidence 97655543
No 216
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=41.64 E-value=50 Score=36.03 Aligned_cols=66 Identities=23% Similarity=0.476 Sum_probs=46.5
Q ss_pred CcEEEEecccCCcccCcchhhHHHHHHHHHHHhhcc-CCeeEEEEecc--CCCcEEEEEeCCHHHHHHHHHHHCCcEeCC
Q 009565 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKI-GPVDSVKVCEN--HPQGVVLVRFKDRKDAQKCIELMNGRWFGG 495 (532)
Q Consensus 419 ~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskf-G~V~~V~l~~~--~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G 495 (532)
.+.|+|--+ |..++. -||...|..| -.|..++|+++ ..+-.+.|+|.+..+|..-.+.+||+.|..
T Consensus 74 ~~mLcilaV--P~~mt~---------~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAV--PAYMTS---------HDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEec--cccccH---------HHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 345666554 555532 2444555433 46888888876 234469999999999999999999999975
No 217
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=38.78 E-value=36 Score=30.35 Aligned_cols=56 Identities=21% Similarity=0.300 Sum_probs=32.2
Q ss_pred EEEEECCCCC---------CCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHH-HHHHHH
Q 009565 290 HVYVTGLPDD---------VTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPS-VALATQ 356 (532)
Q Consensus 290 ~VyV~nLP~~---------vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~es-A~~Al~ 356 (532)
.+.|-|+|.. ++-.+|.+.|+.|.++. ++...++ .-+.|+++|.|.+--+ -..|++
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k---------v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK---------VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE---------EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce---------eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 3566677643 35679999999999987 6666663 3678999999976544 455664
No 218
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=38.20 E-value=5.2 Score=44.23 Aligned_cols=71 Identities=13% Similarity=0.139 Sum_probs=56.7
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
-..+.|||+|++++++-.+|..+++.+-.+.. +-+.......++..+++|+|..--....|+-.||+..++
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lr--------fals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLR--------FALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchhee--------eeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 34578999999999999999999998766553 555444334566778999999888888899999998886
No 219
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=37.86 E-value=1.1e+02 Score=24.33 Aligned_cols=54 Identities=15% Similarity=0.279 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcE--eCCeEEEEEeecCCcccc
Q 009565 441 SELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRW--FGGRQIHASEDDGLVNHA 510 (532)
Q Consensus 441 ~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~--f~GR~I~V~~~dg~~~~~ 510 (532)
..+..+||+.|+..|+|.-+.+-.-.+.. ..+.|-. =+||...-.|..|...|.
T Consensus 5 e~i~~~iR~~fs~lG~I~vLYvn~~eS~~----------------~~~~GGvV~eDgR~y~F~Y~~G~i~Ye 60 (62)
T PF15513_consen 5 EEITAEIRQFFSQLGEIAVLYVNPYESDE----------------DRLTGGVVMEDGRHYTFVYENGQISYE 60 (62)
T ss_pred HHHHHHHHHHHHhcCcEEEEEEcccccCC----------------CeEeccEEEeCCCEEEEEEeCCcEEEe
Confidence 45778999999999998765553322211 1223322 268888888988887774
No 220
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=37.55 E-value=83 Score=35.28 Aligned_cols=63 Identities=14% Similarity=0.331 Sum_probs=50.8
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHh--ccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHH-------
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFS--KCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQL------- 357 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFs--k~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~------- 357 (532)
+.+-|.++-||..+-.++++.||+ .|-.+.+ |.+-.+. -=||+|.+..+|+.|.+.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~is--------cefa~N~-------nWyITfesd~DAQqAykylreevk~ 238 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVIS--------CEFAHND-------NWYITFESDTDAQQAYKYLREEVKT 238 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCcee--------eeeeecC-------ceEEEeecchhHHHHHHHHHHHHHh
Confidence 347789999999999999999998 5887776 7776652 369999999999998754
Q ss_pred hCCceec
Q 009565 358 LDGTPFR 364 (532)
Q Consensus 358 LnG~~l~ 364 (532)
+.|+.|+
T Consensus 239 fqgKpIm 245 (684)
T KOG2591|consen 239 FQGKPIM 245 (684)
T ss_pred hcCcchh
Confidence 6677775
No 221
>PF15519 RBM39linker: linker between RRM2 and RRM3 domains in RBM39 protein; PDB: 3S6E_A 2LQ5_A.
Probab=37.35 E-value=24 Score=28.83 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=11.0
Q ss_pred CCCcEEEEecccCCcc
Q 009565 417 TIPATVILRFMFTPAE 432 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~ 432 (532)
..++|++|+|||.|..
T Consensus 52 ~aS~C~lLkNMFDP~~ 67 (73)
T PF15519_consen 52 IASRCFLLKNMFDPAE 67 (73)
T ss_dssp ---SEEEEESSS-TTC
T ss_pred CCCceeeeecCCCccc
Confidence 4567999999999886
No 222
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=34.99 E-value=2.1e+02 Score=21.98 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=32.3
Q ss_pred HHHHHHhhccC-CeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCc
Q 009565 445 ADVQEECVKIG-PVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGR 491 (532)
Q Consensus 445 edLre~fskfG-~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr 491 (532)
.+|-+.|.+.| .|.++.+.....+++.-+.+.+.+.|.+++.. +|.
T Consensus 16 a~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~-~G~ 62 (66)
T cd04908 16 AAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKE-AGF 62 (66)
T ss_pred HHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHH-CCC
Confidence 46777777777 68888876654457777778777777777765 444
No 223
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=31.18 E-value=47 Score=35.91 Aligned_cols=38 Identities=24% Similarity=0.359 Sum_probs=33.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHCCc-EeCCeEEEEEeecC
Q 009565 468 QGVVLVRFKDRKDAQKCIELMNGR-WFGGRQIHASEDDG 505 (532)
Q Consensus 468 kG~aFV~F~s~eeA~kAi~~LnGr-~f~GR~I~V~~~dg 505 (532)
.|++||.+.+..-|.+|++.++|. .+.|.++.+.+.-.
T Consensus 37 ~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 37 SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 389999999999999999999995 58999999965443
No 224
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.39 E-value=1.3e+02 Score=32.58 Aligned_cols=56 Identities=21% Similarity=0.241 Sum_probs=46.2
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHH
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQL 357 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~ 357 (532)
...|=|-++|...-.++|..+|+.|+.--- +|+++-|. .||-.|.+...|..||-+
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgf-------dIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGF-------DIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCc-------eeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 466889999999888899999999976542 47777764 799999999999999943
No 225
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=28.18 E-value=2.7e+02 Score=22.28 Aligned_cols=49 Identities=27% Similarity=0.297 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 299 DVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 299 ~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
.++..+|+..+.+|+-.. |..|+ + | =||.|.+..+|++|....||+.+.
T Consensus 11 ~~~v~d~K~~Lr~y~~~~-----------I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR-----------IRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CccHHHHHHHHhcCCcce-----------EEecC-C----E-EEEEECChHHHHHHHHhcCCCEEE
Confidence 467889999999998754 34452 2 3 389999999999999999999985
No 226
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.34 E-value=1.7e+02 Score=33.05 Aligned_cols=70 Identities=23% Similarity=0.269 Sum_probs=53.8
Q ss_pred CCcEEEEECCCCC-CCHHHHHHHHhcc----CccccCCCCCCCeEEEEecC----------CCCC---------------
Q 009565 287 VNTHVYVTGLPDD-VTVEEMVEVFSKC----GIIKEDPETKKPRIKIYVDK----------ETGM--------------- 336 (532)
Q Consensus 287 ~~~~VyV~nLP~~-vTeeeL~elFsk~----G~I~~d~~~~~prikl~~d~----------~tG~--------------- 336 (532)
..++|-|-||.++ +...+|.-+|+.| |.|.+ |.||.-. -+|.
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilS--------V~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~ 244 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILS--------VKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESE 244 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeE--------EEechhhhhHHHhhhhcccCChhhhccccccCcccc
Confidence 4577999999987 7888999998865 57776 7776421 0111
Q ss_pred ---------------------cc-ccEEEEecCHHHHHHHHHHhCCceec
Q 009565 337 ---------------------KK-GDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 337 ---------------------~k-G~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
.+ =||.|+|.+.+.|.......+|..|.
T Consensus 245 sD~ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfE 294 (650)
T KOG2318|consen 245 SDDEEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFE 294 (650)
T ss_pred cchhhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceec
Confidence 12 27999999999999999999999996
No 227
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=27.27 E-value=1.8e+02 Score=25.18 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=37.5
Q ss_pred cchhhHHHHHHHHHHHhhccCCeeEE-----EEecc--CCCcEEEEEeCCHHHHHHHHH
Q 009565 435 ADENLRSELEADVQEECVKIGPVDSV-----KVCEN--HPQGVVLVRFKDRKDAQKCIE 486 (532)
Q Consensus 435 ~D~~l~~ei~edLre~fskfG~V~~V-----~l~~~--~~kG~aFV~F~s~eeA~kAi~ 486 (532)
.|+..+.++...+...|++||.=--+ ....+ ++...+.|+|.+.+.|..|..
T Consensus 13 ~D~e~y~~Y~~~~~~a~~~~Ggr~LvRGG~v~~lEG~w~ptr~vviEFps~~~ar~~y~ 71 (96)
T COG5470 13 RDPEQYKDYVSKAKPAIEKFGGRYLVRGGEVETLEGEWRPTRNVVIEFPSLEAARDCYN 71 (96)
T ss_pred cCHHHHHHHHHHhHHHHHHhCCeeEeeCCCeeeccCCCCcccEEEEEcCCHHHHHHHhc
Confidence 46777888999999999999952211 11111 445679999999999998864
No 228
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=26.31 E-value=96 Score=24.67 Aligned_cols=14 Identities=36% Similarity=0.539 Sum_probs=13.0
Q ss_pred HHHHHHHhccCccc
Q 009565 303 EEMVEVFSKCGIIK 316 (532)
Q Consensus 303 eeL~elFsk~G~I~ 316 (532)
.+|+++|+..|.|.
T Consensus 9 ~~iR~~fs~lG~I~ 22 (62)
T PF15513_consen 9 AEIRQFFSQLGEIA 22 (62)
T ss_pred HHHHHHHHhcCcEE
Confidence 58999999999998
No 229
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=25.85 E-value=49 Score=19.52 Aligned_cols=11 Identities=27% Similarity=0.827 Sum_probs=8.7
Q ss_pred cceEEEcCCCc
Q 009565 24 EGWYILDENQQ 34 (532)
Q Consensus 24 ~~Wyy~~~~~~ 34 (532)
..|||+..+|.
T Consensus 8 ~~wYy~~~~G~ 18 (19)
T PF01473_consen 8 GNWYYFDSDGY 18 (19)
T ss_dssp TEEEEETTTSB
T ss_pred CEEEEeCCCcc
Confidence 57999988773
No 230
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=24.33 E-value=68 Score=36.59 Aligned_cols=68 Identities=13% Similarity=0.014 Sum_probs=51.9
Q ss_pred CcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEE
Q 009565 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQI 498 (532)
Q Consensus 419 ~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I 498 (532)
..+||++|+.... -.+-++....++|-|.++.... |+|..|..+.-+.+|+..++-..++|..+
T Consensus 40 ~~~vfv~~~~~~~-----------s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl 103 (668)
T KOG2253|consen 40 RDTVFVGNISYLV-----------SQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQKL 103 (668)
T ss_pred CceeEecchhhhh-----------hHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcchh
Confidence 3488888883322 1234556667779888776554 99999999999999999999999999887
Q ss_pred EEEe
Q 009565 499 HASE 502 (532)
Q Consensus 499 ~V~~ 502 (532)
.+..
T Consensus 104 ~~~~ 107 (668)
T KOG2253|consen 104 IENV 107 (668)
T ss_pred hccc
Confidence 7644
No 231
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=23.72 E-value=48 Score=36.37 Aligned_cols=73 Identities=15% Similarity=0.189 Sum_probs=51.1
Q ss_pred CCcEEEEECCCCCC-CHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 287 VNTHVYVTGLPDDV-TVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 287 ~~~~VyV~nLP~~v-TeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
.++.|-+.-.|+.. |-..|...|.+||.|.. |.+-.. .-.|.|+|.+...|-.|- ...+..|+
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n--------~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avln- 434 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIEN--------IQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLN- 434 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCcccc--------ccccCc------hhhheeeeeccccccchh-ccccceec-
Confidence 34555555556654 55789999999999986 655332 236999999999997776 46777776
Q ss_pred CCCeeEEEeccc
Q 009565 366 DGKIPMSVTQAK 377 (532)
Q Consensus 366 G~~~~I~V~~A~ 377 (532)
+ +.|+|...+
T Consensus 435 n--r~iKl~whn 444 (526)
T KOG2135|consen 435 N--RFIKLFWHN 444 (526)
T ss_pred C--ceeEEEEec
Confidence 4 456665544
No 232
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=23.61 E-value=3.2e+02 Score=22.98 Aligned_cols=48 Identities=17% Similarity=0.077 Sum_probs=37.5
Q ss_pred HHHHHHHHhhccC-CeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCC
Q 009565 443 LEADVQEECVKIG-PVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNG 490 (532)
Q Consensus 443 i~edLre~fskfG-~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnG 490 (532)
-.+.++++++++| +|.++.+..+.-+.++.+++.+.+.|.++.-.+..
T Consensus 21 R~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~ 69 (91)
T PF08734_consen 21 RAEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRS 69 (91)
T ss_pred HHHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHc
Confidence 3456777777776 78888888777788999999999999988766543
No 233
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=21.30 E-value=64 Score=33.04 Aligned_cols=74 Identities=18% Similarity=0.310 Sum_probs=43.4
Q ss_pred CcEEEEECCCCC------------CCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCc-----cccEE--------
Q 009565 288 NTHVYVTGLPDD------------VTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMK-----KGDAL-------- 342 (532)
Q Consensus 288 ~~~VyV~nLP~~------------vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~-----kG~aF-------- 342 (532)
..+||+.+||-. -+++-|+..|..||.|.. ...|-|.-++..-+|+. +||+|
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~---vdipicdplr~~mn~kisgiq~~gfg~g~dlffea 225 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRN---VDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEA 225 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhcccee---cCCcccchhHHHhcCccccceeeccccCcchhHHH
Confidence 356777777732 467899999999999974 23333333333334444 34433
Q ss_pred -EEecCHHHHHHHHHHhCCceec
Q 009565 343 -VTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 343 -V~F~~~esA~~Al~~LnG~~l~ 364 (532)
|.|..--....|+..|.|..+.
T Consensus 226 yvqfmeykgfa~amdalr~~k~a 248 (445)
T KOG2891|consen 226 YVQFMEYKGFAQAMDALRGMKLA 248 (445)
T ss_pred HHHHHHHHhHHHHHHHHhcchHH
Confidence 4444444455666666666553
No 234
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=20.29 E-value=98 Score=32.08 Aligned_cols=175 Identities=9% Similarity=0.194 Sum_probs=93.5
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecC-------CCCCccccEEEEecCHHHHH----HHH
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDK-------ETGMKKGDALVTYLKEPSVA----LAT 355 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~-------~tG~~kG~aFV~F~~~esA~----~Al 355 (532)
..+.|...|+..+++--.|...|.+||+|.+ |.|+.+. ...+.....++.|.+.+.+- ..+
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIES--------iYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvL 85 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIES--------IYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVL 85 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeE--------EEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHH
Confidence 3466889999999999999999999999998 9998763 12234457899999988763 233
Q ss_pred HHhCCc--eecCCCCeeEEEecccccccchhhhh-hhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcc
Q 009565 356 QLLDGT--PFRPDGKIPMSVTQAKFEQKGERFIA-KQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAE 432 (532)
Q Consensus 356 ~~LnG~--~l~~G~~~~I~V~~A~~~~kg~~~~~-~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~ 432 (532)
+.|... .+. ...+.+.+....+....... ....-. ..-...++-.+. .....+.|+|.=- ..
T Consensus 86 QrLsEfK~~L~---S~~L~lsFV~l~y~~~~~~~~~~~~~~-~~~~~~L~~~i~--------~~gATRSl~IeF~---~~ 150 (309)
T PF10567_consen 86 QRLSEFKTKLK---SESLTLSFVSLNYQKKTDPNDEEADFS-DYLVASLQYNII--------NRGATRSLAIEFK---DP 150 (309)
T ss_pred HHHHHHHHhcC---CcceeEEEEEEeccccccccccccchh-hHHhhhhhheee--------cCCcceEEEEEec---Cc
Confidence 333322 232 13456655554332211000 000000 000001100111 1122344544322 11
Q ss_pred cCcchhhHHHHHHHHHHHhhccC----CeeEEEEecc------CCCcEEEEEeCCHHHHHHHHHHHC
Q 009565 433 MRADENLRSELEADVQEECVKIG----PVDSVKVCEN------HPQGVVLVRFKDRKDAQKCIELMN 489 (532)
Q Consensus 433 ~~~D~~l~~ei~edLre~fskfG----~V~~V~l~~~------~~kG~aFV~F~s~eeA~kAi~~Ln 489 (532)
.. ...++. +.| .....=+ .|++|.|+.. -|.-||.++|-+..-|...+..|.
T Consensus 151 ~~-~~dl~~---~kL-~fL~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 151 VD-KDDLIE---KKL-PFLKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred cc-hhHHHH---Hhh-hhhccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 11 112221 222 2222223 3677777632 467799999999999999888876
Done!