Query 009565
Match_columns 532
No_of_seqs 576 out of 2078
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 08:03:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009565.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009565hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 5.2E-29 1.8E-33 240.9 19.3 166 287-506 14-181 (213)
2 3nmr_A Cugbp ELAV-like family 100.0 4.8E-28 1.6E-32 223.8 19.0 166 287-504 2-175 (175)
3 3md3_A Nuclear and cytoplasmic 100.0 9.5E-28 3.2E-32 219.6 19.9 161 289-504 1-165 (166)
4 1b7f_A Protein (SXL-lethal pro 100.0 6.9E-28 2.3E-32 221.6 19.0 160 288-503 3-168 (168)
5 1fxl_A Paraneoplastic encephal 100.0 1.3E-27 4.4E-32 219.0 19.7 160 288-503 2-167 (167)
6 1l3k_A Heterogeneous nuclear r 100.0 2.2E-27 7.6E-32 223.9 19.9 172 286-509 11-186 (196)
7 2qfj_A FBP-interacting repress 100.0 2.3E-27 8E-32 227.1 19.7 176 287-507 27-206 (216)
8 2cjk_A Nuclear polyadenylated 99.9 1.4E-27 4.8E-32 219.6 14.9 161 287-506 2-166 (167)
9 1fje_B Nucleolin RBD12, protei 99.9 2E-26 7E-31 214.0 14.6 164 286-506 11-174 (175)
10 3smz_A Protein raver-1, ribonu 99.9 1.7E-25 5.9E-30 224.2 20.3 169 287-507 94-265 (284)
11 3pgw_A U1-A; protein-RNA compl 99.9 2.1E-25 7.1E-30 223.4 20.7 193 286-504 7-281 (282)
12 2g4b_A Splicing factor U2AF 65 99.9 2.1E-25 7.1E-30 206.1 17.8 165 286-503 2-171 (172)
13 2yh0_A Splicing factor U2AF 65 99.9 6.4E-26 2.2E-30 214.2 14.6 187 287-507 3-195 (198)
14 2ghp_A U4/U6 snRNA-associated 99.9 4E-25 1.4E-29 222.4 18.8 169 287-506 116-291 (292)
15 1qm9_A Polypyrimidine tract-bi 99.9 1.8E-25 6.1E-30 212.2 11.4 191 288-506 3-197 (198)
16 2adc_A Polypyrimidine tract-bi 99.9 6.3E-25 2.1E-29 214.5 14.7 189 286-506 32-228 (229)
17 3tyt_A Heterogeneous nuclear r 99.9 2.1E-24 7.2E-29 208.4 17.3 187 287-502 3-203 (205)
18 2ghp_A U4/U6 snRNA-associated 99.9 5.9E-24 2E-28 213.8 18.1 156 286-507 39-198 (292)
19 3sde_A Paraspeckle component 1 99.9 1.6E-23 5.6E-28 208.6 19.3 153 286-506 20-179 (261)
20 3smz_A Protein raver-1, ribonu 99.9 1.8E-23 6E-28 209.6 19.2 151 287-506 21-175 (284)
21 4fxv_A ELAV-like protein 1; RN 99.8 3.2E-18 1.1E-22 146.2 10.9 80 287-377 18-97 (99)
22 3s6e_A RNA-binding protein 39; 99.7 7.7E-18 2.6E-22 148.0 11.7 89 417-506 5-93 (114)
23 3v4m_A Splicing factor U2AF 65 99.7 1.2E-17 4E-22 144.6 11.8 88 418-506 4-97 (105)
24 2dit_A HIV TAT specific factor 99.7 2.7E-17 9.3E-22 143.2 12.3 98 415-512 11-108 (112)
25 4f25_A Polyadenylate-binding p 99.7 2.7E-17 9.1E-22 144.0 10.3 78 288-378 5-82 (115)
26 2kn4_A Immunoglobulin G-bindin 99.7 8.4E-17 2.9E-21 147.7 13.3 145 326-507 3-151 (158)
27 2la6_A RNA-binding protein FUS 99.7 6.7E-17 2.3E-21 137.1 11.1 89 286-377 11-99 (99)
28 2cpe_A RNA-binding protein EWS 99.7 1.6E-16 5.4E-21 137.8 11.8 91 286-379 13-103 (113)
29 3s8s_A Histone-lysine N-methyl 99.7 1.2E-16 4.1E-21 139.2 11.0 80 288-378 6-85 (110)
30 2lxi_A RNA-binding protein 10; 99.7 4.7E-17 1.6E-21 136.7 7.1 80 289-379 2-83 (91)
31 2i2y_A Fusion protein consists 99.7 3.9E-16 1.3E-20 142.4 13.3 139 334-506 9-148 (150)
32 2lkz_A RNA-binding protein 5; 99.7 9.5E-17 3.2E-21 136.4 8.4 79 288-377 9-93 (95)
33 2pe8_A Splicing factor 45; RRM 99.7 2.9E-16 9.9E-21 135.8 11.1 83 418-506 7-94 (105)
34 3ue2_A Poly(U)-binding-splicin 99.7 2.6E-16 8.9E-21 139.1 10.7 84 419-509 20-111 (118)
35 3mdf_A Peptidyl-prolyl CIS-tra 99.7 3.8E-16 1.3E-20 128.1 9.8 81 286-377 5-85 (85)
36 3md1_A Nuclear and cytoplasmic 99.6 5.9E-16 2E-20 126.4 10.7 79 289-378 2-80 (83)
37 3p5t_L Cleavage and polyadenyl 99.6 1.7E-16 5.9E-21 132.4 7.7 79 289-378 2-82 (90)
38 3bs9_A Nucleolysin TIA-1 isofo 99.6 5.4E-16 1.8E-20 127.8 10.6 80 287-377 5-84 (87)
39 2cqc_A Arginine/serine-rich sp 99.6 1E-15 3.4E-20 128.2 11.4 81 286-377 13-93 (95)
40 2e5h_A Zinc finger CCHC-type a 99.6 7.1E-16 2.4E-20 129.0 9.9 81 286-377 14-94 (94)
41 2dnz_A Probable RNA-binding pr 99.6 9.4E-16 3.2E-20 128.5 10.5 82 287-379 4-85 (95)
42 3ns6_A Eukaryotic translation 99.6 2.3E-16 8E-21 134.5 6.9 81 287-377 5-91 (100)
43 2dnh_A Bruno-like 5, RNA bindi 99.6 1.5E-15 5.2E-20 129.7 11.9 84 287-379 14-97 (105)
44 1x5t_A Splicing factor 3B subu 99.6 7.9E-16 2.7E-20 129.3 9.9 82 287-379 4-86 (96)
45 1whw_A Hypothetical protein ri 99.6 9.6E-16 3.3E-20 129.6 10.1 83 286-379 6-88 (99)
46 2x1f_A MRNA 3'-END-processing 99.6 9.2E-16 3.1E-20 129.3 9.9 81 288-379 2-82 (96)
47 2cq0_A Eukaryotic translation 99.6 9.7E-16 3.3E-20 130.7 9.9 83 286-379 13-95 (103)
48 1x5u_A Splicing factor 3B subu 99.6 1.4E-15 4.8E-20 130.0 10.8 83 286-379 13-95 (105)
49 2do4_A Squamous cell carcinoma 99.6 1.8E-15 6.3E-20 128.2 11.4 82 286-379 15-96 (100)
50 2dgp_A Bruno-like 4, RNA bindi 99.6 1.4E-15 4.8E-20 130.2 10.7 86 286-379 11-96 (106)
51 2dnm_A SRP46 splicing factor; 99.6 8.9E-16 3E-20 130.9 9.4 83 286-379 11-93 (103)
52 3ucg_A Polyadenylate-binding p 99.6 1.3E-15 4.6E-20 125.9 10.1 79 288-378 6-84 (89)
53 2div_A TRNA selenocysteine ass 99.6 9.1E-16 3.1E-20 129.8 9.1 85 286-379 7-94 (99)
54 2cpz_A CUG triplet repeat RNA- 99.6 1.9E-15 6.4E-20 131.6 11.3 82 287-379 24-105 (115)
55 2jrs_A RNA-binding protein 39; 99.6 1.5E-15 5E-20 131.5 10.5 81 286-377 24-104 (108)
56 2dgo_A Cytotoxic granule-assoc 99.6 2.6E-15 9.1E-20 130.5 12.2 83 286-379 13-95 (115)
57 1p27_B RNA-binding protein 8A; 99.6 1.4E-15 4.9E-20 130.1 10.2 82 286-378 21-102 (106)
58 2cqb_A Peptidyl-prolyl CIS-tra 99.6 1E-15 3.5E-20 130.2 9.0 83 286-379 10-92 (102)
59 3s7r_A Heterogeneous nuclear r 99.6 2.1E-15 7.2E-20 124.5 10.5 79 286-376 9-87 (87)
60 2dgs_A DAZ-associated protein 99.6 1.7E-15 5.9E-20 128.2 10.2 82 286-379 8-89 (99)
61 1x5s_A Cold-inducible RNA-bind 99.6 1.2E-15 4E-20 129.7 9.2 83 286-379 10-92 (102)
62 3n9u_C Cleavage and polyadenyl 99.6 1.6E-15 5.3E-20 140.3 10.4 81 287-378 54-136 (156)
63 2cpf_A RNA binding motif prote 99.6 1.4E-15 4.9E-20 128.3 9.2 82 287-379 4-88 (98)
64 2ywk_A Putative RNA-binding pr 99.6 2.4E-15 8.3E-20 126.0 10.5 80 286-377 14-93 (95)
65 2khc_A Testis-specific RNP-typ 99.6 1.9E-15 6.4E-20 132.0 9.7 81 286-377 38-118 (118)
66 2ek1_A RNA-binding protein 12; 99.6 1.9E-15 6.5E-20 126.7 9.3 79 288-377 15-93 (95)
67 2mss_A Protein (musashi1); RNA 99.6 8.3E-16 2.8E-20 123.3 6.7 75 290-376 1-75 (75)
68 3ulh_A THO complex subunit 4; 99.6 3E-15 1E-19 128.3 10.7 80 286-377 27-106 (107)
69 1oo0_B CG8781-PA, drosophila Y 99.6 3E-15 1E-19 129.1 10.7 82 286-378 24-105 (110)
70 2cqp_A RNA-binding protein 12; 99.6 3.4E-15 1.1E-19 126.0 10.6 81 286-377 13-93 (98)
71 1x4h_A RNA-binding protein 28; 99.6 2.4E-15 8E-20 129.7 9.8 83 286-379 13-101 (111)
72 1s79_A Lupus LA protein; RRM, 99.6 1.1E-15 3.9E-20 131.5 7.7 78 287-377 10-87 (103)
73 1x4e_A RNA binding motif, sing 99.6 5E-16 1.7E-20 127.7 5.2 80 286-376 3-82 (85)
74 4a8x_A RNA-binding protein wit 99.6 1.9E-15 6.6E-20 124.5 8.5 81 287-378 3-84 (88)
75 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.2E-15 4.1E-20 122.7 6.9 76 289-376 1-76 (77)
76 2cph_A RNA binding motif prote 99.6 3.7E-15 1.3E-19 127.6 10.3 83 286-379 13-97 (107)
77 2fy1_A RNA-binding motif prote 99.6 3.5E-15 1.2E-19 130.8 10.3 81 286-378 5-85 (116)
78 1u6f_A Tcubp1, RNA-binding pro 99.6 4.8E-15 1.6E-19 133.2 11.3 83 286-379 40-122 (139)
79 1p1t_A Cleavage stimulation fa 99.6 2.3E-15 7.9E-20 128.2 8.7 81 287-378 7-87 (104)
80 2dng_A Eukaryotic translation 99.6 5.3E-15 1.8E-19 126.2 10.4 81 286-379 13-93 (103)
81 3ex7_B RNA-binding protein 8A; 99.6 4.5E-15 1.5E-19 131.1 10.1 83 286-379 20-102 (126)
82 1jmt_A Splicing factor U2AF 35 99.6 5.2E-15 1.8E-19 127.6 10.1 85 419-503 1-103 (104)
83 1wi8_A EIF-4B, eukaryotic tran 99.6 5.5E-15 1.9E-19 126.3 10.2 81 286-379 13-94 (104)
84 2d9p_A Polyadenylate-binding p 99.6 5.9E-15 2E-19 125.8 10.2 81 286-379 13-93 (103)
85 2kxn_B Transformer-2 protein h 99.6 4.2E-15 1.4E-19 132.9 9.5 82 286-378 44-125 (129)
86 2cqd_A RNA-binding region cont 99.6 5E-15 1.7E-19 129.1 9.5 81 286-378 15-95 (116)
87 2dhg_A TRNA selenocysteine ass 99.6 3.6E-15 1.2E-19 127.2 8.4 81 286-378 7-89 (104)
88 2cq4_A RNA binding motif prote 99.6 4E-15 1.4E-19 129.3 8.7 80 287-378 24-103 (114)
89 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.4E-15 4.9E-20 129.4 5.7 80 286-378 17-97 (100)
90 2dgx_A KIAA0430 protein; RRM d 99.6 7.4E-15 2.5E-19 124.0 10.0 79 286-378 7-89 (96)
91 1h2v_Z 20 kDa nuclear CAP bind 99.6 9E-15 3.1E-19 134.2 11.2 83 286-379 37-119 (156)
92 2kt5_A RNA and export factor-b 99.6 9.7E-15 3.3E-19 128.8 10.7 81 286-378 33-113 (124)
93 2ki2_A SS-DNA binding protein 99.6 1.3E-15 4.4E-20 126.5 4.8 78 289-378 2-79 (90)
94 2cpy_A RNA-binding protein 12; 99.6 6.4E-15 2.2E-19 128.4 9.1 79 286-377 13-92 (114)
95 2do0_A HnRNP M, heterogeneous 99.6 1.4E-14 4.9E-19 125.5 11.2 81 286-378 13-93 (114)
96 2m2b_A RNA-binding protein 10; 99.6 2.4E-15 8.1E-20 134.4 6.3 83 286-378 21-107 (131)
97 2dgv_A HnRNP M, heterogeneous 99.6 7E-15 2.4E-19 122.4 8.8 80 286-378 6-85 (92)
98 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.4E-14 5E-19 123.3 10.8 80 286-378 13-92 (103)
99 2nlw_A Eukaryotic translation 99.6 6.2E-15 2.1E-19 126.7 8.5 80 286-377 13-98 (105)
100 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 9.2E-15 3.2E-19 130.9 10.0 80 286-376 61-140 (140)
101 2dh8_A DAZ-associated protein 99.6 5.1E-15 1.7E-19 126.6 7.7 82 286-379 14-95 (105)
102 2krb_A Eukaryotic translation 99.6 2.7E-15 9.3E-20 122.5 5.7 74 288-373 1-80 (81)
103 2rs2_A Musashi-1, RNA-binding 99.6 8.6E-15 2.9E-19 126.8 9.2 81 286-378 23-103 (109)
104 2jwn_A Embryonic polyadenylate 99.6 9.3E-15 3.2E-19 128.7 9.4 80 288-379 36-115 (124)
105 2db1_A Heterogeneous nuclear r 99.6 1.1E-14 3.9E-19 127.9 9.9 79 286-377 15-96 (118)
106 1x4b_A Heterogeneous nuclear r 99.6 1.1E-14 3.8E-19 126.9 9.8 81 287-379 26-106 (116)
107 2cq3_A RNA-binding protein 9; 99.5 3E-14 1E-18 121.3 12.1 81 286-379 13-93 (103)
108 2kn4_A Immunoglobulin G-bindin 99.5 1.3E-14 4.3E-19 133.1 10.2 83 286-379 68-150 (158)
109 2dgw_A Probable RNA-binding pr 99.5 2.1E-14 7.2E-19 119.6 10.5 79 286-378 8-86 (91)
110 2hvz_A Splicing factor, argini 99.5 7.1E-15 2.4E-19 124.8 7.5 75 289-379 1-75 (101)
111 1rk8_A CG8781-PA, CG8781-PA pr 99.5 1.7E-14 5.7E-19 133.9 10.7 83 286-379 70-152 (165)
112 2hgl_A HNRPF protein, heteroge 99.5 1.2E-14 4.1E-19 131.5 9.4 79 286-377 42-123 (136)
113 1wel_A RNA-binding protein 12; 99.5 7.9E-15 2.7E-19 129.6 8.0 80 286-377 23-102 (124)
114 2cqg_A TDP-43, TAR DNA-binding 99.5 2.6E-14 9E-19 121.7 10.9 81 286-379 13-93 (103)
115 1x4a_A Splicing factor, argini 99.5 3.5E-14 1.2E-18 122.3 11.8 80 286-379 20-99 (109)
116 1x5o_A RNA binding motif, sing 99.5 2.1E-14 7.2E-19 124.6 10.4 81 287-377 24-110 (114)
117 2err_A Ataxin-2-binding protei 99.5 1.9E-14 6.5E-19 124.5 10.0 79 286-377 27-105 (109)
118 2lea_A Serine/arginine-rich sp 99.5 6.2E-15 2.1E-19 132.8 7.2 83 286-379 45-127 (135)
119 2dis_A Unnamed protein product 99.5 9.6E-15 3.3E-19 125.6 8.0 82 287-379 7-92 (109)
120 2lcw_A RNA-binding protein FUS 99.3 5.2E-16 1.8E-20 135.4 0.0 90 286-378 5-94 (116)
121 2cpi_A CCR4-NOT transcription 99.5 1.1E-14 3.7E-19 126.4 8.3 83 286-379 13-101 (111)
122 1wez_A HnRNP H', FTP-3, hetero 99.5 1E-14 3.4E-19 125.1 7.9 78 286-377 13-90 (102)
123 1iqt_A AUF1, heterogeneous nuc 99.5 3.9E-15 1.3E-19 119.3 4.8 75 290-376 1-75 (75)
124 3r27_A HnRNP L, heterogeneous 99.5 2.1E-14 7.2E-19 123.1 9.5 77 286-379 19-97 (100)
125 3q2s_C Cleavage and polyadenyl 99.5 9.9E-15 3.4E-19 143.1 8.5 81 287-378 67-149 (229)
126 2wbr_A GW182, gawky, LD47780P; 99.5 2E-14 6.8E-19 120.0 9.0 73 288-377 7-79 (89)
127 2lmi_A GRSF-1, G-rich sequence 99.5 1.2E-14 4.3E-19 125.2 7.5 79 286-377 9-90 (107)
128 3lqv_A PRE-mRNA branch site pr 99.5 5.2E-14 1.8E-18 122.3 11.4 80 286-379 6-85 (115)
129 1sjq_A Polypyrimidine tract-bi 99.5 1.8E-14 6.1E-19 124.6 8.1 77 286-379 14-92 (105)
130 2dnn_A RNA-binding protein 12; 99.5 3.4E-14 1.1E-18 123.7 9.0 77 287-377 15-91 (109)
131 1wg5_A Heterogeneous nuclear r 99.5 2.7E-14 9.3E-19 122.4 8.1 80 286-377 13-92 (104)
132 2cpx_A Hypothetical protein FL 99.5 2E-14 6.8E-19 124.8 7.3 83 286-379 23-105 (115)
133 2j8a_A Histone-lysine N-methyl 99.5 6.8E-14 2.3E-18 124.6 10.5 81 289-380 3-97 (136)
134 2a3j_A U1 small nuclear ribonu 99.5 4.3E-14 1.5E-18 126.4 9.3 79 286-378 27-109 (127)
135 1fj7_A Nucleolin RBD1, protein 99.5 9.9E-15 3.4E-19 123.9 4.9 80 286-378 15-94 (101)
136 2ad9_A Polypyrimidine tract-bi 99.5 5.4E-14 1.9E-18 124.3 9.8 77 286-379 29-107 (119)
137 4fxv_A ELAV-like protein 1; RN 99.5 6.2E-14 2.1E-18 119.5 9.8 77 418-505 18-98 (99)
138 2e5j_A Methenyltetrahydrofolat 99.5 8.1E-14 2.8E-18 117.6 10.3 77 286-378 17-93 (97)
139 1x4c_A Splicing factor, argini 99.5 1.1E-13 3.8E-18 119.3 11.0 77 286-378 13-92 (108)
140 2jvr_A Nucleolar protein 3; RN 99.5 5.5E-14 1.9E-18 122.8 9.1 76 287-377 27-103 (111)
141 2fc8_A NCL protein; structure 99.5 8.7E-14 3E-18 118.1 10.2 80 286-379 13-92 (102)
142 3pgw_S U1-70K; protein-RNA com 99.5 3.9E-14 1.3E-18 151.5 9.8 79 418-507 101-183 (437)
143 2cq1_A PTB-like protein L; RRM 99.5 1E-13 3.6E-18 118.9 10.3 77 286-379 13-91 (101)
144 1nu4_A U1A RNA binding domain; 99.5 4.2E-14 1.4E-18 118.8 7.7 79 286-378 6-88 (97)
145 1why_A Hypothetical protein ri 99.5 1.2E-13 4.2E-18 116.4 10.2 79 286-379 15-93 (97)
146 2ytc_A PRE-mRNA-splicing facto 99.5 1E-13 3.6E-18 113.6 9.3 75 286-377 10-85 (85)
147 2fc9_A NCL protein; structure 99.5 8.2E-14 2.8E-18 118.2 9.0 79 286-379 13-91 (101)
148 2xs2_A Deleted in azoospermia- 99.5 3.5E-14 1.2E-18 120.7 6.7 78 287-378 8-85 (102)
149 1x4d_A Matrin 3; structural ge 99.5 3.3E-14 1.1E-18 122.4 6.5 75 287-378 14-91 (102)
150 2la4_A Nuclear and cytoplasmic 99.5 9.4E-14 3.2E-18 117.8 9.2 74 287-377 26-99 (101)
151 2dnq_A RNA-binding protein 4B; 99.5 1.5E-13 5E-18 114.3 10.1 75 286-379 6-80 (90)
152 2xnq_A Nuclear polyadenylated 99.5 1.7E-13 5.8E-18 116.1 10.5 74 286-378 20-94 (97)
153 3nmr_A Cugbp ELAV-like family 99.5 1.3E-13 4.3E-18 126.7 10.3 82 287-377 94-175 (175)
154 1x4g_A Nucleolysin TIAR; struc 99.5 1.4E-13 4.9E-18 118.5 9.9 76 287-379 24-99 (109)
155 2f3j_A RNA and export factor b 99.5 1E-13 3.6E-18 130.6 9.8 81 286-378 86-166 (177)
156 1wex_A Hypothetical protein (r 99.5 8.6E-14 2.9E-18 120.0 8.4 76 286-378 13-90 (104)
157 2dha_A FLJ20171 protein; RRM d 99.5 5.8E-14 2E-18 124.8 7.4 78 287-377 22-103 (123)
158 3md3_A Nuclear and cytoplasmic 99.5 2E-13 6.7E-18 124.1 11.0 81 286-377 85-165 (166)
159 3egn_A RNA-binding protein 40; 99.5 3.7E-14 1.3E-18 128.2 6.1 88 286-379 43-130 (143)
160 2cpj_A Non-POU domain-containi 99.5 1.7E-13 5.9E-18 115.9 9.8 76 286-378 13-88 (99)
161 1fxl_A Paraneoplastic encephal 99.5 2.1E-13 7E-18 124.1 10.6 81 287-376 87-167 (167)
162 1fjc_A Nucleolin RBD2, protein 99.5 1.2E-13 4.2E-18 115.9 8.3 77 286-378 14-90 (96)
163 1whx_A Hypothetical protein ri 99.5 9.1E-14 3.1E-18 120.8 7.7 75 287-378 9-83 (111)
164 1b7f_A Protein (SXL-lethal pro 99.5 2E-13 6.8E-18 124.7 10.4 81 287-376 88-168 (168)
165 3s8s_A Histone-lysine N-methyl 99.5 2.7E-13 9.4E-18 117.8 10.5 77 418-505 5-85 (110)
166 4f25_A Polyadenylate-binding p 99.5 1.8E-13 6.2E-18 119.4 9.4 79 418-507 4-84 (115)
167 3pgw_S U1-70K; protein-RNA com 99.4 2.4E-13 8.2E-18 145.4 11.5 82 286-378 100-181 (437)
168 2jvo_A Nucleolar protein 3; nu 99.4 2.8E-13 9.5E-18 117.2 9.8 75 286-379 29-103 (108)
169 2g4b_A Splicing factor U2AF 65 99.4 1.9E-13 6.5E-18 125.5 9.2 78 288-376 94-171 (172)
170 2dnp_A RNA-binding protein 14; 99.4 3E-13 1E-17 112.4 9.4 75 286-379 7-81 (90)
171 2lxi_A RNA-binding protein 10; 99.4 1E-13 3.5E-18 116.2 6.5 79 420-509 2-86 (91)
172 2kvi_A Nuclear polyadenylated 99.4 2.4E-13 8.3E-18 114.5 8.6 74 286-378 8-82 (96)
173 2dgu_A Heterogeneous nuclear r 99.4 3.4E-13 1.2E-17 115.0 9.5 75 286-379 9-83 (103)
174 2i2y_A Fusion protein consists 99.4 2.8E-13 9.7E-18 123.3 9.5 77 286-378 71-147 (150)
175 3lqv_A PRE-mRNA branch site pr 99.4 4.7E-13 1.6E-17 116.1 10.4 83 418-511 7-90 (115)
176 2dgt_A RNA-binding protein 30; 99.4 5.4E-13 1.8E-17 111.3 10.2 75 286-379 8-82 (92)
177 3zzy_A Polypyrimidine tract-bi 99.4 4.4E-13 1.5E-17 120.2 10.2 78 288-379 28-106 (130)
178 2wbr_A GW182, gawky, LD47780P; 99.4 6.3E-13 2.2E-17 111.0 10.4 72 419-503 7-78 (89)
179 2hgm_A HNRPF protein, heteroge 99.4 1.1E-13 3.8E-18 123.5 6.2 79 286-377 40-119 (126)
180 2qfj_A FBP-interacting repress 99.4 4.4E-13 1.5E-17 127.6 10.4 81 287-378 124-204 (216)
181 2cpd_A Apobec-1 stimulating pr 99.4 1.1E-12 3.7E-17 110.9 11.6 75 286-379 13-89 (99)
182 2dnl_A Cytoplasmic polyadenyla 99.4 2.7E-13 9.4E-18 118.0 8.0 69 286-363 6-80 (114)
183 1wg1_A KIAA1579 protein, homol 99.4 4.6E-13 1.6E-17 111.0 8.8 74 287-378 4-77 (88)
184 2hgn_A Heterogeneous nuclear r 99.4 6E-14 2.1E-18 127.3 3.6 78 287-378 45-122 (139)
185 1wf1_A RNA-binding protein RAL 99.4 5.7E-13 2E-17 114.9 9.6 73 287-378 26-99 (110)
186 2cqh_A IGF-II mRNA-binding pro 99.4 3.7E-13 1.3E-17 112.4 8.2 76 286-379 6-83 (93)
187 2cjk_A Nuclear polyadenylated 99.4 2.5E-13 8.5E-18 124.1 7.7 79 288-378 87-165 (167)
188 1x4f_A Matrin 3; structural ge 99.4 1.7E-13 5.7E-18 120.0 6.2 75 287-378 24-101 (112)
189 3ns6_A Eukaryotic translation 99.4 1.3E-13 4.5E-18 117.3 5.4 86 419-509 6-96 (100)
190 2e5h_A Zinc finger CCHC-type a 99.4 1E-12 3.5E-17 109.6 10.8 78 415-503 12-93 (94)
191 2cq3_A RNA-binding protein 9; 99.4 1.8E-12 6.3E-17 110.2 12.5 83 415-508 11-95 (103)
192 2nlw_A Eukaryotic translation 99.4 7.5E-13 2.6E-17 113.5 10.1 88 418-510 14-104 (105)
193 3bs9_A Nucleolysin TIA-1 isofo 99.4 8.7E-13 3E-17 108.4 9.9 78 418-506 5-86 (87)
194 2hzc_A Splicing factor U2AF 65 99.4 5E-13 1.7E-17 109.8 8.5 72 286-375 4-86 (87)
195 3md1_A Nuclear and cytoplasmic 99.4 1.1E-12 3.6E-17 106.9 10.2 76 420-506 2-81 (83)
196 4a8x_A RNA-binding protein wit 99.4 1E-12 3.5E-17 108.1 10.1 78 418-506 3-85 (88)
197 2dnz_A Probable RNA-binding pr 99.4 1.1E-12 3.9E-17 109.6 10.4 79 418-507 4-86 (95)
198 2yh0_A Splicing factor U2AF 65 99.4 6.4E-13 2.2E-17 124.8 9.9 83 286-379 112-194 (198)
199 2e44_A Insulin-like growth fac 99.4 3.3E-13 1.1E-17 113.2 7.0 78 287-379 14-92 (96)
200 3d2w_A TAR DNA-binding protein 99.4 5.2E-13 1.8E-17 111.4 8.2 74 287-378 10-83 (89)
201 2lea_A Serine/arginine-rich sp 99.4 1.9E-13 6.3E-18 123.1 5.7 119 340-507 6-128 (135)
202 2cqc_A Arginine/serine-rich sp 99.4 1.3E-12 4.5E-17 109.1 10.4 77 417-504 13-93 (95)
203 2e5g_A U6 snRNA-specific termi 99.4 7.6E-13 2.6E-17 110.9 8.8 74 287-377 7-80 (94)
204 3mdf_A Peptidyl-prolyl CIS-tra 99.4 1E-12 3.5E-17 107.5 9.2 75 418-503 6-84 (85)
205 2dgx_A KIAA0430 protein; RRM d 99.4 2.1E-12 7.1E-17 108.9 11.4 85 417-508 7-92 (96)
206 4f02_A Polyadenylate-binding p 99.4 8.7E-13 3E-17 126.9 10.2 78 288-378 103-180 (213)
207 1x5s_A Cold-inducible RNA-bind 99.4 1.1E-12 3.7E-17 111.3 9.6 82 416-508 9-94 (102)
208 1sjr_A Polypyrimidine tract-bi 99.4 8.1E-13 2.8E-17 122.9 9.5 80 287-379 45-124 (164)
209 2cqi_A Nucleolysin TIAR; RNA r 99.4 2.7E-12 9.1E-17 109.2 12.0 80 417-507 13-94 (103)
210 2x1f_A MRNA 3'-END-processing 99.4 1.6E-12 5.3E-17 109.3 10.4 80 419-509 2-85 (96)
211 1whw_A Hypothetical protein ri 99.4 1.9E-12 6.4E-17 109.2 10.9 80 418-508 7-90 (99)
212 2a3j_A U1 small nuclear ribonu 99.4 1E-12 3.6E-17 117.3 9.7 84 418-508 28-112 (127)
213 2cqb_A Peptidyl-prolyl CIS-tra 99.4 1.2E-12 4.2E-17 110.9 9.7 82 416-508 9-94 (102)
214 2e5i_A Heterogeneous nuclear r 99.4 1.6E-12 5.6E-17 115.6 10.4 76 289-379 26-102 (124)
215 2jrs_A RNA-binding protein 39; 99.4 1.1E-12 3.7E-17 113.4 9.0 81 416-507 23-107 (108)
216 1l3k_A Heterogeneous nuclear r 99.4 1.3E-12 4.4E-17 122.5 10.2 81 287-379 103-183 (196)
217 2cq0_A Eukaryotic translation 99.4 1.7E-12 5.9E-17 110.4 9.9 82 416-508 12-97 (103)
218 2dgo_A Cytotoxic granule-assoc 99.4 2.5E-12 8.5E-17 111.6 11.1 81 416-507 12-96 (115)
219 3beg_B Splicing factor, argini 99.4 5.6E-13 1.9E-17 116.4 6.9 66 286-367 14-79 (115)
220 2d9p_A Polyadenylate-binding p 99.4 1.5E-12 5.1E-17 110.7 9.4 80 417-507 13-94 (103)
221 2do4_A Squamous cell carcinoma 99.4 2.8E-12 9.6E-17 108.4 11.0 79 417-506 15-96 (100)
222 2jvr_A Nucleolar protein 3; RN 99.4 1.2E-12 4.2E-17 114.2 9.0 79 417-506 26-105 (111)
223 1x4a_A Splicing factor, argini 99.4 3.2E-12 1.1E-16 109.9 11.5 79 418-507 21-100 (109)
224 2cpi_A CCR4-NOT transcription 99.4 2.6E-12 8.8E-17 111.3 10.9 80 417-507 13-102 (111)
225 2dgs_A DAZ-associated protein 99.4 2.7E-12 9.3E-17 108.3 10.7 79 417-507 8-90 (99)
226 1sjq_A Polypyrimidine tract-bi 99.4 1.2E-12 4E-17 113.3 8.4 78 417-507 14-93 (105)
227 2diu_A KIAA0430 protein; struc 99.4 1.5E-12 5E-17 109.9 8.8 71 288-379 9-84 (96)
228 2dnm_A SRP46 splicing factor; 99.4 1.5E-12 5E-17 110.8 8.9 82 415-507 9-94 (103)
229 3r27_A HnRNP L, heterogeneous 99.4 2.2E-12 7.4E-17 110.6 9.9 76 418-506 20-97 (100)
230 1x5p_A Negative elongation fac 99.4 3.2E-12 1.1E-16 107.7 10.8 75 286-379 13-87 (97)
231 2krb_A Eukaryotic translation 99.4 8.1E-13 2.8E-17 107.7 6.8 76 420-500 2-80 (81)
232 2err_A Ataxin-2-binding protei 99.4 2E-12 6.9E-17 111.7 9.5 79 417-506 27-107 (109)
233 3ulh_A THO complex subunit 4; 99.4 3.1E-12 1.1E-16 109.4 10.6 78 416-504 26-106 (107)
234 1x5u_A Splicing factor 3B subu 99.4 2.3E-12 7.8E-17 109.8 9.7 80 417-507 13-96 (105)
235 1x5t_A Splicing factor 3B subu 99.4 1.7E-12 5.8E-17 108.7 8.8 79 418-507 4-87 (96)
236 2ywk_A Putative RNA-binding pr 99.4 1.9E-12 6.4E-17 108.2 9.0 76 418-504 15-93 (95)
237 2dgv_A HnRNP M, heterogeneous 99.4 2E-12 6.7E-17 107.5 8.9 79 417-506 6-86 (92)
238 2cq1_A PTB-like protein L; RRM 99.4 4.8E-12 1.6E-16 108.5 11.5 77 418-507 14-92 (101)
239 2e5j_A Methenyltetrahydrofolat 99.4 2.1E-12 7.1E-17 108.9 9.1 78 417-506 17-94 (97)
240 2lkz_A RNA-binding protein 5; 99.3 8.7E-13 3E-17 111.9 6.7 75 420-505 10-94 (95)
241 2cpf_A RNA binding motif prote 99.3 2.1E-12 7.1E-17 108.7 8.9 79 418-507 4-89 (98)
242 2dgt_A RNA-binding protein 30; 99.3 5.4E-12 1.8E-16 105.2 11.3 79 415-508 6-84 (92)
243 2cph_A RNA binding motif prote 99.3 3.9E-12 1.3E-16 108.6 10.7 82 417-509 13-100 (107)
244 2dgp_A Bruno-like 4, RNA bindi 99.3 2.7E-12 9.3E-17 109.6 9.7 83 415-508 9-98 (106)
245 2cq2_A Hypothetical protein LO 99.3 2.3E-12 7.8E-17 113.0 9.1 77 287-377 24-104 (114)
246 2cpz_A CUG triplet repeat RNA- 99.3 4E-12 1.4E-16 110.4 10.4 80 418-508 24-107 (115)
247 1whx_A Hypothetical protein ri 99.3 2.1E-12 7.2E-17 112.1 8.6 76 419-507 10-85 (111)
248 1x4h_A RNA-binding protein 28; 99.3 7.4E-12 2.5E-16 107.6 11.8 81 417-508 13-103 (111)
249 1oo0_B CG8781-PA, drosophila Y 99.3 3.7E-12 1.3E-16 109.6 9.9 78 418-506 25-106 (110)
250 2dnh_A Bruno-like 5, RNA bindi 99.3 4.5E-12 1.5E-16 108.0 10.2 81 417-508 13-99 (105)
251 2dnq_A RNA-binding protein 4B; 99.3 5.7E-12 1.9E-16 104.6 10.5 77 417-508 6-82 (90)
252 2cpj_A Non-POU domain-containi 99.3 4E-12 1.4E-16 107.4 9.7 81 415-508 11-91 (99)
253 2voo_A Lupus LA protein; RNA-b 99.3 3E-12 1E-16 122.1 9.8 78 287-377 108-185 (193)
254 2xnq_A Nuclear polyadenylated 99.3 6.8E-12 2.3E-16 106.2 10.9 75 417-506 20-95 (97)
255 1why_A Hypothetical protein ri 99.3 4.2E-12 1.5E-16 106.8 9.6 77 417-506 15-93 (97)
256 1p27_B RNA-binding protein 8A; 99.3 3E-12 1E-16 109.3 8.8 78 418-506 22-103 (106)
257 2la6_A RNA-binding protein FUS 99.3 4.1E-12 1.4E-16 107.3 9.5 78 415-503 9-98 (99)
258 2kt5_A RNA and export factor-b 99.3 9.5E-12 3.2E-16 109.5 12.1 83 417-510 33-118 (124)
259 1x4g_A Nucleolysin TIAR; struc 99.3 6E-12 2.1E-16 108.3 10.6 78 418-508 24-101 (109)
260 1x4d_A Matrin 3; structural ge 99.3 3.2E-12 1.1E-16 109.9 8.7 76 418-506 14-92 (102)
261 1rk8_A CG8781-PA, CG8781-PA pr 99.3 3.9E-12 1.3E-16 117.8 9.9 139 343-507 11-153 (165)
262 1wex_A Hypothetical protein (r 99.3 4.3E-12 1.5E-16 109.3 9.4 77 418-507 14-92 (104)
263 2la4_A Nuclear and cytoplasmic 99.3 3.7E-12 1.3E-16 107.9 8.8 75 418-505 26-100 (101)
264 2pe8_A Splicing factor 45; RRM 99.3 7.7E-12 2.6E-16 107.9 10.7 80 287-377 7-92 (105)
265 2do0_A HnRNP M, heterogeneous 99.3 8.1E-12 2.8E-16 108.0 10.9 78 418-506 14-94 (114)
266 2ad9_A Polypyrimidine tract-bi 99.3 4.6E-12 1.6E-16 112.0 9.3 78 417-507 29-108 (119)
267 1x4c_A Splicing factor, argini 99.3 1E-11 3.5E-16 106.9 11.3 77 417-507 13-94 (108)
268 1nu4_A U1A RNA binding domain; 99.3 3.8E-12 1.3E-16 106.8 8.4 83 418-507 7-90 (97)
269 1wf0_A TDP-43, TAR DNA-binding 99.3 3E-12 1E-16 105.8 7.6 75 287-379 4-78 (88)
270 2cqp_A RNA-binding protein 12; 99.3 3.1E-12 1E-16 107.7 7.5 79 417-506 13-95 (98)
271 2fy1_A RNA-binding motif prote 99.3 5.1E-12 1.7E-16 110.5 9.1 79 418-507 6-87 (116)
272 2cpe_A RNA-binding protein EWS 99.3 7.6E-12 2.6E-16 108.1 10.1 80 417-507 13-104 (113)
273 2dgu_A Heterogeneous nuclear r 99.3 1.2E-11 4.3E-16 105.2 11.2 77 417-508 9-85 (103)
274 2ytc_A PRE-mRNA-splicing facto 99.3 8.6E-12 2.9E-16 102.0 9.8 74 417-503 10-84 (85)
275 3ucg_A Polyadenylate-binding p 99.3 6.7E-12 2.3E-16 103.4 9.1 74 420-505 7-84 (89)
276 2dnp_A RNA-binding protein 14; 99.3 9.2E-12 3.1E-16 103.3 9.7 76 417-507 7-82 (90)
277 2hvz_A Splicing factor, argini 99.3 2.8E-12 9.7E-17 108.6 6.7 76 420-507 1-76 (101)
278 2e44_A Insulin-like growth fac 99.3 1E-11 3.5E-16 104.0 10.1 79 417-506 13-92 (96)
279 2dng_A Eukaryotic translation 99.3 1.1E-11 3.8E-16 105.4 10.4 78 417-507 13-94 (103)
280 2dgw_A Probable RNA-binding pr 99.3 1.3E-11 4.5E-16 102.5 10.4 78 416-506 7-87 (91)
281 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.3 1.1E-11 3.7E-16 110.8 10.5 76 417-503 61-140 (140)
282 1x5p_A Negative elongation fac 99.3 1.6E-11 5.4E-16 103.4 10.9 76 417-507 13-88 (97)
283 2jvo_A Nucleolar protein 3; nu 99.3 9.1E-12 3.1E-16 107.6 9.6 75 417-506 29-103 (108)
284 2khc_A Testis-specific RNP-typ 99.3 6.4E-12 2.2E-16 109.4 8.7 75 418-503 39-117 (118)
285 3p5t_L Cleavage and polyadenyl 99.3 1.3E-12 4.4E-17 108.7 4.0 75 421-506 3-83 (90)
286 2cqd_A RNA-binding region cont 99.3 1.3E-11 4.5E-16 107.3 10.6 79 416-506 14-96 (116)
287 2kxn_B Transformer-2 protein h 99.3 5.8E-12 2E-16 112.5 8.4 80 416-506 43-126 (129)
288 2ek1_A RNA-binding protein 12; 99.3 2.7E-12 9.4E-17 107.2 5.9 76 418-504 14-93 (95)
289 2div_A TRNA selenocysteine ass 99.3 6E-12 2.1E-16 106.1 7.9 79 417-506 7-94 (99)
290 1u6f_A Tcubp1, RNA-binding pro 99.3 1.3E-11 4.3E-16 110.7 10.4 80 417-507 40-123 (139)
291 1s79_A Lupus LA protein; RRM, 99.3 5.4E-12 1.8E-16 108.4 7.6 74 419-504 11-87 (103)
292 1p1t_A Cleavage stimulation fa 99.3 3.5E-12 1.2E-16 108.3 6.4 77 419-506 8-88 (104)
293 2cpd_A Apobec-1 stimulating pr 99.3 2.9E-11 9.8E-16 102.1 11.9 77 416-507 12-90 (99)
294 3dxb_A Thioredoxin N-terminall 99.3 9.3E-12 3.2E-16 120.4 10.1 83 418-506 123-213 (222)
295 2j76_E EIF-4B, EIF4B, eukaryot 99.3 4.9E-12 1.7E-16 107.4 7.1 77 417-506 17-98 (100)
296 2bz2_A Negative elongation fac 99.3 1.2E-11 4.1E-16 109.2 9.8 75 286-379 37-111 (121)
297 3ex7_B RNA-binding protein 8A; 99.3 8.4E-12 2.9E-16 110.0 8.7 79 418-507 21-103 (126)
298 1wi8_A EIF-4B, eukaryotic tran 99.3 1.7E-11 5.9E-16 104.4 10.4 77 418-507 14-95 (104)
299 3s7r_A Heterogeneous nuclear r 99.3 1.5E-11 5.2E-16 101.1 9.5 75 417-503 9-87 (87)
300 1fjc_A Nucleolin RBD2, protein 99.3 8.1E-12 2.8E-16 104.7 7.9 79 417-507 14-92 (96)
301 1x4f_A Matrin 3; structural ge 99.3 6.8E-12 2.3E-16 109.7 7.7 79 418-509 24-105 (112)
302 1h2v_Z 20 kDa nuclear CAP bind 99.3 1.8E-11 6E-16 112.1 10.8 79 417-506 37-119 (156)
303 3tyt_A Heterogeneous nuclear r 99.3 6.7E-12 2.3E-16 120.7 8.2 79 287-375 122-203 (205)
304 1fje_B Nucleolin RBD12, protei 99.3 8.3E-12 2.8E-16 115.1 8.5 75 287-377 98-172 (175)
305 2fc9_A NCL protein; structure 99.3 1.3E-11 4.3E-16 104.6 8.8 80 417-507 13-92 (101)
306 2dhg_A TRNA selenocysteine ass 99.3 7.1E-12 2.4E-16 106.6 7.1 80 418-508 8-92 (104)
307 1x4e_A RNA binding motif, sing 99.3 3.1E-12 1E-16 104.9 4.5 74 418-502 4-81 (85)
308 3n9u_C Cleavage and polyadenyl 99.3 1.3E-11 4.3E-16 114.0 9.1 77 419-506 55-137 (156)
309 2cq4_A RNA binding motif prote 99.2 1.3E-11 4.3E-16 107.0 8.5 75 420-506 26-104 (114)
310 1sjr_A Polypyrimidine tract-bi 99.2 1.3E-11 4.5E-16 114.7 9.1 76 420-506 47-124 (164)
311 2mss_A Protein (musashi1); RNA 99.2 5.7E-12 2E-16 100.7 5.5 71 421-503 1-75 (75)
312 2cpx_A Hypothetical protein FL 99.2 1.1E-11 3.6E-16 107.4 7.7 79 418-507 24-106 (115)
313 2kvi_A Nuclear polyadenylated 99.2 1.2E-11 4.3E-16 104.0 7.9 75 418-507 9-84 (96)
314 2dh8_A DAZ-associated protein 99.2 1.2E-11 3.9E-16 105.6 7.5 80 416-507 13-96 (105)
315 2ki2_A SS-DNA binding protein 99.2 3.5E-12 1.2E-16 105.6 4.0 76 420-507 2-81 (90)
316 2diu_A KIAA0430 protein; struc 99.2 2.2E-11 7.6E-16 102.7 8.9 76 420-508 10-86 (96)
317 2cqh_A IGF-II mRNA-binding pro 99.2 1.3E-11 4.3E-16 103.0 7.3 76 418-507 7-84 (93)
318 2jwn_A Embryonic polyadenylate 99.2 2.2E-11 7.4E-16 107.0 9.1 75 420-506 37-115 (124)
319 1wf1_A RNA-binding protein RAL 99.2 2E-11 6.9E-16 105.1 8.8 74 418-506 26-100 (110)
320 1x5o_A RNA binding motif, sing 99.2 2.6E-11 8.9E-16 104.9 9.4 78 418-506 24-112 (114)
321 2m2b_A RNA-binding protein 10; 99.2 8E-12 2.7E-16 111.4 6.2 79 417-507 21-109 (131)
322 3sde_A Paraspeckle component 1 99.2 2.2E-11 7.7E-16 120.7 10.0 83 288-379 96-179 (261)
323 1uaw_A Mouse-musashi-1; RNP-ty 99.2 9.4E-12 3.2E-16 99.7 5.7 72 420-503 1-76 (77)
324 2dis_A Unnamed protein product 99.2 2.4E-11 8.2E-16 104.2 8.4 80 418-508 7-94 (109)
325 1wg1_A KIAA1579 protein, homol 99.2 2.8E-11 9.5E-16 100.2 8.4 76 418-507 4-79 (88)
326 3pgw_A U1-A; protein-RNA compl 99.2 3.7E-11 1.3E-15 119.7 10.8 77 286-377 205-281 (282)
327 1x4b_A Heterogeneous nuclear r 99.2 3.3E-11 1.1E-15 104.7 9.1 77 420-508 28-108 (116)
328 2rs2_A Musashi-1, RNA-binding 99.2 3.7E-11 1.3E-15 103.8 9.2 77 418-506 24-104 (109)
329 3u1l_A PRE-mRNA-splicing facto 99.2 1.6E-11 5.6E-16 121.0 7.7 76 286-378 132-228 (240)
330 2cq2_A Hypothetical protein LO 99.2 4.9E-11 1.7E-15 104.5 9.5 76 419-507 25-107 (114)
331 1wg5_A Heterogeneous nuclear r 99.2 4.4E-11 1.5E-15 102.3 8.9 78 417-506 13-94 (104)
332 2cpy_A RNA-binding protein 12; 99.2 4E-11 1.4E-15 104.2 8.7 78 416-505 12-93 (114)
333 3zzy_A Polypyrimidine tract-bi 99.2 6.9E-11 2.4E-15 105.9 10.3 74 421-506 30-106 (130)
334 2cqg_A TDP-43, TAR DNA-binding 99.2 9.5E-11 3.3E-15 99.5 10.7 78 418-508 14-95 (103)
335 2db1_A Heterogeneous nuclear r 99.2 3E-11 1E-15 105.9 7.6 75 418-504 16-96 (118)
336 2e5i_A Heterogeneous nuclear r 99.2 8.9E-11 3E-15 104.4 10.6 73 421-506 27-102 (124)
337 3egn_A RNA-binding protein 40; 99.2 5.6E-11 1.9E-15 107.1 9.3 78 418-506 44-130 (143)
338 2fc8_A NCL protein; structure 99.2 7.4E-11 2.5E-15 99.8 8.8 81 416-507 12-93 (102)
339 2bz2_A Negative elongation fac 99.2 5.1E-11 1.7E-15 105.2 7.9 75 418-507 38-112 (121)
340 1wez_A HnRNP H', FTP-3, hetero 99.2 4.3E-11 1.5E-15 102.3 7.0 79 415-506 11-92 (102)
341 3beg_B Splicing factor, argini 99.2 7.8E-11 2.7E-15 102.7 8.7 74 418-505 15-93 (115)
342 2lmi_A GRSF-1, G-rich sequence 99.1 3.1E-11 1.1E-15 103.7 5.9 77 417-505 9-91 (107)
343 1fj7_A Nucleolin RBD1, protein 99.1 2E-11 6.7E-16 103.4 4.6 77 418-506 16-95 (101)
344 2hgl_A HNRPF protein, heteroge 99.1 4.5E-11 1.6E-15 107.9 7.0 76 417-504 42-123 (136)
345 2f3j_A RNA and export factor b 99.1 9.1E-11 3.1E-15 110.4 9.3 82 417-509 86-170 (177)
346 2dnn_A RNA-binding protein 12; 99.1 1.3E-10 4.5E-15 100.9 9.3 72 420-504 17-91 (109)
347 2e5g_A U6 snRNA-specific termi 99.1 1.2E-10 4.1E-15 97.4 8.7 76 418-506 7-82 (94)
348 3q2s_C Cleavage and polyadenyl 99.1 4.2E-11 1.4E-15 117.2 6.5 77 419-506 68-150 (229)
349 1wel_A RNA-binding protein 12; 99.1 3.7E-11 1.3E-15 105.9 5.3 76 418-505 24-103 (124)
350 2hzc_A Splicing factor U2AF 65 99.1 1.3E-10 4.6E-15 95.1 8.3 70 419-502 6-86 (87)
351 3d2w_A TAR DNA-binding protein 99.1 2.4E-10 8.1E-15 95.2 9.1 74 417-506 9-84 (89)
352 1iqt_A AUF1, heterogeneous nuc 99.1 3.2E-11 1.1E-15 96.2 3.4 71 421-503 1-75 (75)
353 2dit_A HIV TAT specific factor 99.1 3.1E-10 1.1E-14 98.3 9.9 77 287-378 14-101 (112)
354 1jmt_A Splicing factor U2AF 35 99.1 2.5E-11 8.7E-16 104.4 2.9 72 293-376 20-103 (104)
355 1qm9_A Polypyrimidine tract-bi 99.1 1.2E-10 4.1E-15 109.7 7.7 76 287-377 119-195 (198)
356 3v4m_A Splicing factor U2AF 65 99.1 1.8E-10 6.1E-15 99.3 8.1 79 288-377 5-95 (105)
357 2lcw_A RNA-binding protein FUS 98.7 1E-11 3.5E-16 108.0 0.0 78 419-507 7-96 (116)
358 2adc_A Polypyrimidine tract-bi 99.1 2.5E-10 8.5E-15 110.9 9.4 76 287-377 150-226 (229)
359 3u1l_A PRE-mRNA-splicing facto 99.1 3.5E-10 1.2E-14 111.4 9.9 86 418-507 133-230 (240)
360 2j8a_A Histone-lysine N-methyl 99.1 2.2E-10 7.5E-15 102.1 7.5 104 419-529 2-120 (136)
361 3ue2_A Poly(U)-binding-splicin 99.0 4.1E-10 1.4E-14 99.2 8.5 79 288-377 20-107 (118)
362 2xs2_A Deleted in azoospermia- 99.0 1.9E-10 6.6E-15 97.4 5.7 78 418-508 8-88 (102)
363 2dha_A FLJ20171 protein; RRM d 99.0 1.9E-10 6.5E-15 102.1 5.6 73 419-503 23-102 (123)
364 2hgn_A Heterogeneous nuclear r 99.0 1.1E-10 3.8E-15 105.8 2.6 76 418-506 45-123 (139)
365 3tht_A Alkylated DNA repair pr 99.0 5.8E-10 2E-14 115.4 7.9 77 287-377 17-97 (345)
366 1wf0_A TDP-43, TAR DNA-binding 99.0 5.5E-10 1.9E-14 92.1 6.2 75 418-508 4-80 (88)
367 2hgm_A HNRPF protein, heteroge 99.0 5.6E-10 1.9E-14 99.5 6.6 75 417-504 40-119 (126)
368 2dnl_A Cytoplasmic polyadenyla 99.0 9.1E-10 3.1E-14 95.6 7.7 75 418-504 7-99 (114)
369 2voo_A Lupus LA protein; RNA-b 98.9 1.5E-09 5.1E-14 103.4 8.7 73 420-504 110-185 (193)
370 2d9o_A DNAJ (HSP40) homolog, s 98.9 2.2E-09 7.7E-14 91.7 8.4 62 443-507 30-91 (100)
371 2dnr_A Synaptojanin-1; RRM dom 98.9 4.5E-09 1.5E-13 87.9 9.6 78 420-505 8-85 (91)
372 2d9o_A DNAJ (HSP40) homolog, s 98.8 1.5E-08 5.3E-13 86.5 8.9 64 298-379 27-90 (100)
373 1ufw_A Synaptojanin 2; RNP dom 98.7 1.6E-08 5.3E-13 85.1 6.8 77 420-503 16-92 (95)
374 3tht_A Alkylated DNA repair pr 98.7 3.1E-08 1.1E-12 102.5 9.6 76 418-504 17-97 (345)
375 3s6e_A RNA-binding protein 39; 98.7 2.5E-08 8.4E-13 87.2 6.8 75 288-377 7-91 (114)
376 1owx_A Lupus LA protein, SS-B, 98.7 4.8E-08 1.6E-12 86.2 8.3 78 283-377 13-94 (121)
377 1wh2_A Hypothetical protein AT 98.6 2.4E-08 8.3E-13 81.2 4.3 62 20-82 14-75 (78)
378 2dnr_A Synaptojanin-1; RRM dom 98.4 6.8E-07 2.3E-11 74.7 7.5 71 288-378 7-85 (91)
379 1owx_A Lupus LA protein, SS-B, 98.3 2.5E-06 8.5E-11 75.2 10.1 79 416-506 15-96 (121)
380 3dxb_A Thioredoxin N-terminall 98.2 1.4E-06 4.7E-11 83.9 7.3 67 300-377 141-211 (222)
381 1ufw_A Synaptojanin 2; RNP dom 98.1 4.5E-06 1.5E-10 70.1 7.4 69 288-376 15-92 (95)
382 2l9w_A U4/U6 snRNA-associated- 98.0 2.6E-05 9E-10 67.0 8.5 73 418-503 20-97 (117)
383 1wey_A Calcipressin 1; structu 97.6 0.00024 8.3E-09 60.6 8.5 80 417-504 3-82 (104)
384 3k3v_A Protein SMY2; GYF domai 97.5 3E-05 1E-09 65.7 1.7 56 21-76 13-76 (100)
385 1uw4_A UPF3X; nonsense mediate 97.2 0.0022 7.5E-08 53.5 9.5 83 289-379 2-88 (91)
386 2l9w_A U4/U6 snRNA-associated- 97.2 0.0017 5.9E-08 55.8 8.9 73 288-377 21-98 (117)
387 1whv_A Poly(A)-specific ribonu 96.7 0.0053 1.8E-07 51.6 7.7 54 290-359 17-70 (100)
388 3ctr_A Poly(A)-specific ribonu 96.2 0.0054 1.8E-07 51.7 5.1 54 290-359 7-60 (101)
389 1wwh_A Nucleoporin 35, nucleop 95.9 0.018 6E-07 50.3 7.0 57 445-504 38-95 (119)
390 1wey_A Calcipressin 1; structu 95.8 0.018 6E-07 49.1 6.6 74 287-377 4-82 (104)
391 2l08_A Regulator of nonsense t 95.6 0.016 5.4E-07 48.8 5.6 84 288-379 9-96 (97)
392 3p3d_A Nucleoporin 53; structu 95.2 0.014 4.9E-07 51.6 4.2 59 446-505 22-98 (132)
393 1wwh_A Nucleoporin 35, nucleop 95.1 0.078 2.7E-06 46.2 8.4 72 287-376 23-94 (119)
394 2dhx_A Poly (ADP-ribose) polym 94.8 0.074 2.5E-06 45.1 7.1 69 287-375 7-80 (104)
395 1syx_B CD2BP2, CD2 antigen cyt 94.5 0.021 7.1E-07 47.0 3.1 51 23-73 25-80 (86)
396 3pq1_A Poly(A) RNA polymerase; 93.6 0.045 1.5E-06 58.5 4.3 54 289-356 54-107 (464)
397 1whv_A Poly(A)-specific ribonu 93.2 0.3 1E-05 41.0 7.7 60 414-489 11-70 (100)
398 1uw4_A UPF3X; nonsense mediate 92.8 0.4 1.4E-05 39.7 8.0 64 420-494 2-71 (91)
399 2dhx_A Poly (ADP-ribose) polym 90.0 1.9 6.3E-05 36.5 9.2 72 418-505 7-83 (104)
400 3p3d_A Nucleoporin 53; structu 89.1 0.67 2.3E-05 40.9 6.2 86 287-377 6-97 (132)
401 3ctr_A Poly(A)-specific ribonu 87.0 0.51 1.7E-05 39.7 3.8 41 445-489 20-60 (101)
402 3d45_A Poly(A)-specific ribonu 81.7 2.7 9.3E-05 45.2 7.7 57 288-361 440-496 (507)
403 3pq1_A Poly(A) RNA polymerase; 77.8 1.8 6.2E-05 46.1 4.7 41 446-487 68-108 (464)
404 2l08_A Regulator of nonsense t 70.3 4.3 0.00015 33.9 4.1 66 418-494 8-79 (97)
405 1ymz_A CC45; artificial protei 41.7 24 0.00081 24.4 3.4 27 167-193 5-31 (43)
406 1wr3_A Ubiquitin-protein ligas 32.4 50 0.0017 21.7 3.7 24 170-193 4-27 (36)
407 3d45_A Poly(A)-specific ribonu 32.3 89 0.003 33.3 7.6 42 445-490 454-495 (507)
408 1e0m_A Wwprototype; SH3 protot 31.1 50 0.0017 21.7 3.6 24 170-193 3-26 (37)
409 4e8u_A Putative uncharacterize 31.1 26 0.0009 32.1 2.7 59 419-479 12-73 (172)
410 2kyk_A E3 ubiquitin-protein li 30.1 66 0.0023 21.6 4.1 24 170-193 6-29 (39)
411 2ysh_A GAS-7, growth-arrest-sp 29.4 61 0.0021 21.8 3.8 24 170-193 7-30 (40)
412 2yse_A Membrane-associated gua 27.9 92 0.0031 23.4 4.8 31 164-194 7-37 (60)
413 2zaj_A Membrane-associated gua 26.6 83 0.0028 22.5 4.2 30 164-193 7-36 (49)
414 4e8u_A Putative uncharacterize 26.0 1.1E+02 0.0038 28.0 6.0 57 289-356 13-81 (172)
415 2dmv_A Itchy homolog E3 ubiqui 25.8 61 0.0021 22.3 3.3 24 170-193 7-30 (43)
416 1wr4_A Ubiquitin-protein ligas 24.7 77 0.0026 20.6 3.5 24 170-193 4-27 (36)
417 1wr7_A NEDD4-2; all-beta, liga 22.3 72 0.0025 21.7 3.1 24 170-193 8-31 (41)
418 3hhl_A RPA0582; alpha-beta-bar 21.0 2.8E+02 0.0096 24.2 7.5 52 435-486 46-106 (143)
419 3lo3_A Uncharacterized conserv 20.5 3.3E+02 0.011 21.7 7.7 52 435-486 14-71 (94)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=5.2e-29 Score=240.87 Aligned_cols=166 Identities=20% Similarity=0.278 Sum_probs=141.8
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+|||+++|+++|+++|++||.|.+ |+|++|+.+|+++|||||+|.+.++|.+||..|||..+. |
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~-g 84 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILS--------IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIK-G 84 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET-T
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEE--------EEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcC-C
Confidence 4589999999999999999999999999997 999999999999999999999999999999999999996 5
Q ss_pred CCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHHH
Q 009565 367 GKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEAD 446 (532)
Q Consensus 367 ~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~ed 446 (532)
+.|++..+........ ....+|+|.|| +..+. .++
T Consensus 85 --~~i~~~~~~~~~~~~~--------------------------------~~~~~l~v~nl--~~~~t---------~~~ 119 (213)
T 4f02_A 85 --KPVRIMWSQRDPSLRK--------------------------------SGVGNIFIKNL--DKSID---------NKA 119 (213)
T ss_dssp --EECEEEECCCCTHHHH--------------------------------HCTTEEEEESC--CTTCC---------HHH
T ss_pred --cccccccccccccccc--------------------------------cccccceECCc--ccccH---------HHH
Confidence 5677776653210000 01248999999 55442 358
Q ss_pred HHHHhhccCCeeEEEEecc--CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCC
Q 009565 447 VQEECVKIGPVDSVKVCEN--HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGL 506 (532)
Q Consensus 447 Lre~fskfG~V~~V~l~~~--~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~ 506 (532)
|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+||+.|||..|+||+|+|.++..+
T Consensus 120 l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 120 LYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp HHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred HHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 9999999999999999865 46899999999999999999999999999999999988654
No 2
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=4.8e-28 Score=223.82 Aligned_cols=166 Identities=18% Similarity=0.303 Sum_probs=140.2
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCC--CccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETG--MKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG--~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
.+++|||+|||+++|+++|+++|++||.|.+ |+|++++.+| .++|||||+|.+.++|..|+..|||..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 73 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYE--------INVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVL 73 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEc
Confidence 3589999999999999999999999999997 9999998776 89999999999999999999999999886
Q ss_pred CCCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHH
Q 009565 365 PDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELE 444 (532)
Q Consensus 365 ~G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~ 444 (532)
.+..+++.+..+..... .....++|+|+|| |..++ .
T Consensus 74 ~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~l~v~nl--~~~~t---------~ 109 (175)
T 3nmr_A 74 PGMHHPIQMKPADSEKN---------------------------------NAVEDRKLFIGMI--SKKCT---------E 109 (175)
T ss_dssp TTCSSCCEEEECGGGCC---------------------------------SCGGGSEEEEESC--CTTCC---------H
T ss_pred cCCccceEEcccccccc---------------------------------ccCCCCeEEEcCC--CCcCC---------H
Confidence 45456677776653211 0112358999999 55442 3
Q ss_pred HHHHHHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcEeC---CeEEEEEeec
Q 009565 445 ADVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFG---GRQIHASEDD 504 (532)
Q Consensus 445 edLre~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~f~---GR~I~V~~~d 504 (532)
++|+++|++||.|.+|.++.+ .++|+|||+|.+.++|.+|+..|||+.+. ||+|+|.|+|
T Consensus 110 ~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 110 NDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 589999999999999999865 56899999999999999999999998765 4999999875
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.5e-28 Score=219.60 Aligned_cols=161 Identities=20% Similarity=0.276 Sum_probs=138.5
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCCC
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~~ 368 (532)
++|||+|||+++|+++|+++|++||.|.+ |+|++++ +|.++|||||+|.+.++|..|+..|||..+. |
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g-- 68 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIAN--------IKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIE-N-- 68 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEE--------EEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEET-T--
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEE--------EEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccC-C--
Confidence 57999999999999999999999999997 9999995 6889999999999999999999999999996 5
Q ss_pred eeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHHHHH
Q 009565 369 IPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEADVQ 448 (532)
Q Consensus 369 ~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLr 448 (532)
++|.|..+..... .......+|+|.|| |..+. .++|+
T Consensus 69 ~~i~v~~~~~~~~--------------------------------~~~~~~~~l~v~nl--~~~~t---------~~~l~ 105 (166)
T 3md3_A 69 NIVKINWAFQSQQ--------------------------------SSSDDTFNLFVGDL--NVNVD---------DETLR 105 (166)
T ss_dssp EECEEEECCCCCC--------------------------------CCCTTCEEEEEESC--CTTCC---------HHHHH
T ss_pred CeeEEEEcCCCCC--------------------------------CCCCCCceEEECCC--CCCCC---------HHHHH
Confidence 6788877753210 11223569999999 55542 25899
Q ss_pred HHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeec
Q 009565 449 EECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDD 504 (532)
Q Consensus 449 e~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~d 504 (532)
++|++||.|.+|.++.+ .++|+|||+|.+.++|.+|+..|||+.|+||+|+|.|+.
T Consensus 106 ~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 106 NAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred HHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 99999999999999854 568999999999999999999999999999999999864
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=6.9e-28 Score=221.60 Aligned_cols=160 Identities=24% Similarity=0.386 Sum_probs=139.8
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCC
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~ 367 (532)
+++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|..|+..|+|..+. |
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~-g- 72 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINT--------CRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVR-N- 72 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEE--------EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET-T-
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeC-C-
Confidence 589999999999999999999999999996 999999889999999999999999999999999999996 5
Q ss_pred CeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHHHH
Q 009565 368 KIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEADV 447 (532)
Q Consensus 368 ~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edL 447 (532)
++|.|..+..... ....++|+|.|| |..+. .++|
T Consensus 73 -~~l~v~~~~~~~~----------------------------------~~~~~~l~v~nl--~~~~t---------~~~l 106 (168)
T 1b7f_A 73 -KRLKVSYARPGGE----------------------------------SIKDTNLYVTNL--PRTIT---------DDQL 106 (168)
T ss_dssp -EECEEEECCCCSS----------------------------------TTTTCEEEEESC--CTTCC---------HHHH
T ss_pred -cEEEEEecCCCcc----------------------------------cCCCCCEEEeCC--CCCCC---------HHHH
Confidence 6788887763210 112468999999 55442 3589
Q ss_pred HHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCC--eEEEEEee
Q 009565 448 QEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGG--RQIHASED 503 (532)
Q Consensus 448 re~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G--R~I~V~~~ 503 (532)
+++|++||.|..|.++.+ .++|+|||+|.+.++|.+|+..|||+.|.| ++|+|.|+
T Consensus 107 ~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 107 DTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999999999999999865 457999999999999999999999999988 99999874
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.95 E-value=1.3e-27 Score=218.95 Aligned_cols=160 Identities=24% Similarity=0.363 Sum_probs=138.3
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCC
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~ 367 (532)
.++|||+|||+++|+++|+++|+.||.|.. |+|++++.+|.++|||||+|.+.++|..|+..|||..+. |
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~-g- 71 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIES--------CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQ-T- 71 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET-T-
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEE--------EEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccC-C-
Confidence 489999999999999999999999999997 999999889999999999999999999999999999996 5
Q ss_pred CeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHHHH
Q 009565 368 KIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEADV 447 (532)
Q Consensus 368 ~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edL 447 (532)
++|.|..+..... ....++|+|.|| |.... .++|
T Consensus 72 -~~l~v~~~~~~~~----------------------------------~~~~~~l~v~nl--~~~~t---------~~~l 105 (167)
T 1fxl_A 72 -KTIKVSYARPSSA----------------------------------SIRDANLYVSGL--PKTMT---------QKEL 105 (167)
T ss_dssp -EECEEEECCCCCG----------------------------------GGTTCEEEEESC--CTTCC---------HHHH
T ss_pred -ceEEEEecCCCcc----------------------------------cCCCCcEEECCC--CCcCC---------HHHH
Confidence 6788877763210 012358999999 55442 3589
Q ss_pred HHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeE--EEEEee
Q 009565 448 QEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQ--IHASED 503 (532)
Q Consensus 448 re~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~--I~V~~~ 503 (532)
+++|++||.|..|.++.+ .++|+|||+|.+.++|.+|+..|||+.|+|+. |+|.|+
T Consensus 106 ~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 106 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 999999999999999865 36899999999999999999999999999975 888764
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.95 E-value=2.2e-27 Score=223.90 Aligned_cols=172 Identities=14% Similarity=0.211 Sum_probs=139.3
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+||.. ++..|.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~- 80 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTD--------CVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVD- 80 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEEC-
Confidence 56799999999999999999999999999997 99999988999999999999999999999975 888886
Q ss_pred CCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHH
Q 009565 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEA 445 (532)
Q Consensus 366 G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~e 445 (532)
| +.|.|..+........ .......++|+|.|| |..++ .+
T Consensus 81 g--~~l~v~~~~~~~~~~~----------------------------~~~~~~~~~l~V~nL--p~~~t---------~~ 119 (196)
T 1l3k_A 81 G--RVVEPKRAVSREDSQR----------------------------PGAHLTVKKIFVGGI--KEDTE---------EH 119 (196)
T ss_dssp T--EECEEEECCC---------------------------------------CCSEEEEECC--TTTCC---------HH
T ss_pred C--EEeeeecccCcccccc----------------------------cccCCCcceEEEeCC--CCCCC---------HH
Confidence 5 6688887763211100 001123469999999 55542 35
Q ss_pred HHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCCccc
Q 009565 446 DVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLVNH 509 (532)
Q Consensus 446 dLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~~~~ 509 (532)
+|+++|++||.|..|.|+.+ +++|||||+|.+.++|.+||.. +|..|+|+.|.|.++..+...
T Consensus 120 ~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp HHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred HHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 89999999999999999865 5689999999999999999986 899999999999998876443
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.95 E-value=2.3e-27 Score=227.13 Aligned_cols=176 Identities=16% Similarity=0.240 Sum_probs=142.6
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+||..|||..|. |
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~-g 97 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKS--------IDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLG-G 97 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC--
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEE--------EEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeC-C
Confidence 4489999999999999999999999999997 999999889999999999999999999999999999996 5
Q ss_pred CCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHHH
Q 009565 367 GKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEAD 446 (532)
Q Consensus 367 ~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~ed 446 (532)
+.|.|.++........ .... .... ....++|+|.|| |..+. .++
T Consensus 98 --~~l~v~~~~~~~~~~~---------~~~~---~~~~-----------~~~~~~l~v~nl--p~~~t---------~~~ 141 (216)
T 2qfj_A 98 --RNIKVGRPSNIGQAQP---------IIDQ---LAEE-----------ARAFNRIYVASV--HQDLS---------DDD 141 (216)
T ss_dssp --CCCEEECCSCCGGGHH---------HHHH---HHHH-----------HTTSCEEEEECC--CTTCC---------HHH
T ss_pred --eeEEEecCCCccccch---------hhhh---hhcc-----------cCCCcEEEEeCC--CCcCC---------HHH
Confidence 5688877653321110 0000 0000 012469999999 55442 358
Q ss_pred HHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCCc
Q 009565 447 VQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLV 507 (532)
Q Consensus 447 Lre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~~ 507 (532)
|+++|++||.|..|.|+.+ +++|+|||+|.+.++|.+|+..|||+.|+||+|+|.++....
T Consensus 142 l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 142 IKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred HHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 9999999999999999865 568999999999999999999999999999999999988763
No 8
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=1.4e-27 Score=219.62 Aligned_cols=161 Identities=16% Similarity=0.250 Sum_probs=135.3
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+|||+++|+++|+++|++||.|.+ |+|++++.+|.++|||||+|.+.++|..||.. +..+. |
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~-g 70 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTD--------LKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILD-G 70 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEE--------EECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEET-T
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccC-C
Confidence 4589999999999999999999999999997 99999988999999999999999999999974 55664 4
Q ss_pred CCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHHH
Q 009565 367 GKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEAD 446 (532)
Q Consensus 367 ~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~ed 446 (532)
+.|.|.++..... . ...++|+|.|| |..+. .++
T Consensus 71 --~~i~v~~~~~~~~-------------------~---------------~~~~~l~V~nl--p~~~t---------~~~ 103 (167)
T 2cjk_A 71 --KVIDPKRAIPRDE-------------------Q---------------DKTGKIFVGGI--GPDVR---------PKE 103 (167)
T ss_dssp --EECCCEECCCHHH-------------------H---------------HHCEEEEEEEE--CTTCC---------HHH
T ss_pred --eEcccccccchhh-------------------c---------------cCCCeEEECCC--CCCCC---------HHH
Confidence 4566655542100 0 01358999999 55542 358
Q ss_pred HHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCC
Q 009565 447 VQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGL 506 (532)
Q Consensus 447 Lre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~ 506 (532)
|+++|++||.|.+|.++.+ .++|+|||+|.+.++|.+|++ |||..|+||+|+|.++..+
T Consensus 104 l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 104 FEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 9999999999999999854 578999999999999999998 8999999999999998764
No 9
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.94 E-value=2e-26 Score=213.98 Aligned_cols=164 Identities=17% Similarity=0.236 Sum_probs=135.8
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|+.||.|.. +.+ ++..+|.++|||||+|.+.++|.+|| .|||..|.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~--------~~~-~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~- 79 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND--------LAV-VDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVF- 79 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT--------CCC-CEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEET-
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce--------EEE-EECCCCccccEEEEEECCHHHHHHHH-hcCCCEeC-
Confidence 45699999999999999999999999999874 222 23357899999999999999999999 59999997
Q ss_pred CCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHH
Q 009565 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEA 445 (532)
Q Consensus 366 G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~e 445 (532)
| ++|.|.++..... ......++|+|.|| |..+. .+
T Consensus 80 g--~~l~v~~~~~~~~--------------------------------~~~~~~~~l~v~nl--p~~~t---------~~ 114 (175)
T 1fje_B 80 G--NEIKLEKPKGRDS--------------------------------KKVRAARTLLAKNL--SFNIT---------ED 114 (175)
T ss_dssp T--EEEEEECCCCSSC--------------------------------STTGGGGEEEEESC--CSSCC---------HH
T ss_pred C--eEEEEecCCCccc--------------------------------cccccCCEEEEeCC--CCCCC---------HH
Confidence 5 6799988874311 01112469999999 55442 25
Q ss_pred HHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCC
Q 009565 446 DVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGL 506 (532)
Q Consensus 446 dLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~ 506 (532)
+|+++|++||.|..+ ...+.++|+|||+|.+.++|.+|+..|||+.|+||+|+|.|+.++
T Consensus 115 ~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 115 ELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 899999999999877 344578999999999999999999999999999999999998765
No 10
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.93 E-value=1.7e-25 Score=224.20 Aligned_cols=169 Identities=17% Similarity=0.221 Sum_probs=145.3
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|..|+..|||..|. |
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g 164 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLER--------CFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLG-P 164 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET-T
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeE--------EEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeC-C
Confidence 3488999999999999999999999999997 999999889999999999999999999999999999996 5
Q ss_pred CCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHHH
Q 009565 367 GKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEAD 446 (532)
Q Consensus 367 ~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~ed 446 (532)
++|.|.++...... ......++|+|+|| |..+.+ .++
T Consensus 165 --~~i~v~~a~~~~~~-------------------------------~~~~~~~~l~v~nl--p~~~~~--------~~~ 201 (284)
T 3smz_A 165 --RTLYVHWTDAGQLT-------------------------------PALLHSRCLCVDRL--PPGFND--------VDA 201 (284)
T ss_dssp --EECEEEECCGGGCC-------------------------------TTTTSCSEEEEECC--CTTCCC--------HHH
T ss_pred --cEEEEEECCCCCCC-------------------------------cccCCccEEEEecC--CcccCC--------HHH
Confidence 67899888632110 01123468999999 554322 258
Q ss_pred HHHHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCCc
Q 009565 447 VQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLV 507 (532)
Q Consensus 447 Lre~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~~ 507 (532)
|+++|++||.|.+|.|+.+ +++|+|||+|.+.++|.+|+..|||+.|+||+|+|.|+..+.
T Consensus 202 l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 202 LCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp HHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred HHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 9999999999999998865 568999999999999999999999999999999999987753
No 11
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.93 E-value=2.1e-25 Score=223.40 Aligned_cols=193 Identities=19% Similarity=0.259 Sum_probs=139.1
Q ss_pred CCCcEEEEECCCCCCCHHHHH----HHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCc
Q 009565 286 KVNTHVYVTGLPDDVTVEEMV----EVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGT 361 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~----elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~ 361 (532)
..+++|||+|||+++|+++|+ ++|++||.|.. |+|++ +|+++|||||+|.+.++|.+||..|||.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~--------v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~ 75 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILD--------ILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGF 75 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEE--------EEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 567999999999999999976 89999999996 88875 6889999999999999999999999999
Q ss_pred eecCCCCeeEEEecccccccc------hhhhhhhhchHHHHh-HHHHHh-hhhcC----------CCC------------
Q 009565 362 PFRPDGKIPMSVTQAKFEQKG------ERFIAKQVDSKKKKK-LKKVEE-KMLGW----------GGR------------ 411 (532)
Q Consensus 362 ~l~~G~~~~I~V~~A~~~~kg------~~~~~~~~~~~~~~k-~~k~~~-k~~~~----------~~~------------ 411 (532)
.|. | +.|.|.++...... ............+.. ...... ..... .+.
T Consensus 76 ~~~-g--~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (282)
T 3pgw_A 76 PFY-D--KPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPR 152 (282)
T ss_pred eeC-C--cEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCccccccc
Confidence 997 5 56888877543211 000000000000000 000000 00000 000
Q ss_pred -----------------------------------------------CCCCCCCCcEEEEecccCCcccCcchhhHHHHH
Q 009565 412 -----------------------------------------------DDAKLTIPATVILRFMFTPAEMRADENLRSELE 444 (532)
Q Consensus 412 -----------------------------------------------~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~ 444 (532)
........++|+|.|| +... ..
T Consensus 153 ~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl--~~~~---------~~ 221 (282)
T 3pgw_A 153 IMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNL--PEET---------NE 221 (282)
T ss_pred ccccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCC--CCcC---------CH
Confidence 0001113468999999 4443 23
Q ss_pred HHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeC-CeEEEEEeec
Q 009565 445 ADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFG-GRQIHASEDD 504 (532)
Q Consensus 445 edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~-GR~I~V~~~d 504 (532)
++|+++|++||.|.+|.|+.++ +|+|||+|.+.++|.+|+..|||+.|+ |++|+|.|+.
T Consensus 222 ~~l~~~F~~~G~i~~v~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 222 LMLSMLFNQFPGFKEVRLVPGR-HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred HHHHHHHHhcCCeEEEEEecCC-CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 5899999999999999998754 699999999999999999999999999 9999998863
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.93 E-value=2.1e-25 Score=206.07 Aligned_cols=165 Identities=16% Similarity=0.295 Sum_probs=129.6
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCC-CCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDP-ETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~-~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
+..++|||+|||+++|+++|+++|++||.|...+ ..+.+...+ ..+.++|||||+|.+.++|.+|+ .|||..+.
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~----~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAV----QINQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEE----EEETTTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeee----EecCCCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 4568999999999999999999999994333100 000011122 13456899999999999999999 89999996
Q ss_pred CCCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHH
Q 009565 365 PDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELE 444 (532)
Q Consensus 365 ~G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~ 444 (532)
| ++|.|.++.... .....++|+|+|| |..+. .
T Consensus 77 -g--~~i~v~~~~~~~----------------------------------~~~~~~~l~v~nl--p~~~t---------~ 108 (172)
T 2g4b_A 77 -G--QSLKIRRPHDYQ----------------------------------PLPGAHKLFIGGL--PNYLN---------D 108 (172)
T ss_dssp -T--EECEEECCSSCC----------------------------------CCTTTTCEEEECC--CTTCC---------H
T ss_pred -C--ceeeecCCcccC----------------------------------CCCCCCEEEEEcC--CCcCC---------H
Confidence 5 678887765221 0112468999999 55542 3
Q ss_pred HHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEee
Q 009565 445 ADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASED 503 (532)
Q Consensus 445 edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~ 503 (532)
++|++.|++||.|..|.++.+ .++|+|||+|.+.++|.+|+..|||..|+||+|.|.++
T Consensus 109 ~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 109 DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 589999999999999999865 45899999999999999999999999999999999875
No 13
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.93 E-value=6.4e-26 Score=214.21 Aligned_cols=187 Identities=14% Similarity=0.227 Sum_probs=136.6
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCC-CCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDP-ETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~-~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..++|||+|||+++|+++|+++|++||.|.... ..+.+.+.+ ..+.++|||||+|.+.++|.+|| .|||..|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~----~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~- 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAV----QINQDKNFAFLEFRSVDETTQAM-AFDGIIFQ- 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEE----EEETTTTEEEEEESCSHHHHHHG-GGTTEEET-
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEe----EecCCCCEEEEEeCCHHHHHHHH-HhcCCEEc-
Confidence 458999999999999999999999996554200 000011111 23567999999999999999999 89999996
Q ss_pred CCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcC-CCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHH
Q 009565 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGW-GGRDDAKLTIPATVILRFMFTPAEMRADENLRSELE 444 (532)
Q Consensus 366 G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~-~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~ 444 (532)
| ++|.|.++............. .... +..........++|+|.|| |.... .
T Consensus 77 g--~~i~v~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~l~v~nl--~~~~~---------~ 128 (198)
T 2yh0_A 77 G--QSLKIRRPHDYQPLPGMSENP---------------SVYVPGVVSTVVPDSAHKLFIGGL--PNYLN---------D 128 (198)
T ss_dssp T--EEEEEECCCCCCCCCCSSSCS---------------SCCCTTSSCCCSSCCCCEEEEECC--CTTCC---------H
T ss_pred C--ceEEEeCCCCCCCCCCCcCCC---------------cCCCCCCccCCCCCCCCEEEEeCC--CCCCC---------H
Confidence 5 679998876432111000000 0000 0001122345679999999 55442 3
Q ss_pred HHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCCc
Q 009565 445 ADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLV 507 (532)
Q Consensus 445 edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~~ 507 (532)
++|+++|++||.|..|.++.+ .++|+|||+|.+.++|.+|+..|||..|+||+|+|.++..+.
T Consensus 129 ~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 129 DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp HHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred HHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 589999999999999999865 458999999999999999999999999999999999987764
No 14
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=4e-25 Score=222.39 Aligned_cols=169 Identities=14% Similarity=0.268 Sum_probs=135.2
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccC-ccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCG-IIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G-~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..++|||+|||+++|+++|+++|+.|| .|.. |+|++++ .|.++|||||+|.+.++|..|+..|||..|.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~--------v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 185 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALS--------IRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIE- 185 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCE--------EECC--------CCEEEEECSSHHHHHHHHHHHTTCEET-
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEE--------EEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeC-
Confidence 458999999999999999999999999 9996 9999985 5899999999999999999999999999996
Q ss_pred CCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcc-cCcchhhHHHHH
Q 009565 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAE-MRADENLRSELE 444 (532)
Q Consensus 366 G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~-~~~D~~l~~ei~ 444 (532)
| ++|.|.++......... .......++|+|+|| |.. +. .
T Consensus 186 g--~~l~v~~a~~~~~~~~~---------------------------~~~~~~~~~l~v~nl--p~~~~t---------~ 225 (292)
T 2ghp_A 186 G--YTLVTKVSNPLEKSKRT---------------------------DSATLEGREIMIRNL--STELLD---------E 225 (292)
T ss_dssp T--EECEEEECCCC------------------------------------CCTTTEEEEEEE--CTTTCC---------H
T ss_pred C--cEEEEEECCCCcccccc---------------------------cccCCCCceEEEECC--CcccCC---------H
Confidence 5 67888887643211110 011223569999999 555 32 3
Q ss_pred HHHHHHhhccCCeeEEEEec-----cCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCC
Q 009565 445 ADVQEECVKIGPVDSVKVCE-----NHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGL 506 (532)
Q Consensus 445 edLre~fskfG~V~~V~l~~-----~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~ 506 (532)
++|+++|++||.|..|.|+. ++++|+|||+|.+.++|.+|+ .|||+.|+||+|.|.|+..+
T Consensus 226 ~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 226 NLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred HHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 58999999999999999986 456899999999999999999 99999999999999998754
No 15
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.92 E-value=1.8e-25 Score=212.19 Aligned_cols=191 Identities=19% Similarity=0.238 Sum_probs=137.3
Q ss_pred CcEEEEECCCC-CCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 288 NTHVYVTGLPD-DVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 288 ~~~VyV~nLP~-~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
+++|||+|||+ ++|+++|+++|++||.|.. |+|++++ +|||||+|.+.++|.+|+..|||..|. |
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~--------v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~-g 68 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQR--------VKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLH-G 68 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSE--------EECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCS-S
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEE--------EEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeec-C
Confidence 58999999999 9999999999999999996 9998873 899999999999999999999999996 5
Q ss_pred CCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCC-CCCCCCCCCcEEEEecccCCcccCcchhhHHHHHH
Q 009565 367 GKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGG-RDDAKLTIPATVILRFMFTPAEMRADENLRSELEA 445 (532)
Q Consensus 367 ~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~-~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~e 445 (532)
++|.|..+..................+........+...... .........++|+|.|| |..+. .+
T Consensus 69 --~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl--~~~~~---------~~ 135 (198)
T 1qm9_A 69 --KPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNI--PPSVS---------EE 135 (198)
T ss_dssp --CCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCC--CTTCC---------HH
T ss_pred --eEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCC--CCCCC---------HH
Confidence 567887776432110000000000000000000000000000 00011223579999999 55442 35
Q ss_pred HHHHHhhccC-CeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeC-CeEEEEEeecCC
Q 009565 446 DVQEECVKIG-PVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFG-GRQIHASEDDGL 506 (532)
Q Consensus 446 dLre~fskfG-~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~-GR~I~V~~~dg~ 506 (532)
+|+++|++|| .|..|.++.+ .+|+|||+|.+.++|.+|+..|||+.|+ |++|+|.|...+
T Consensus 136 ~l~~~f~~~G~~v~~v~i~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 136 DLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HHHHHHHHTTSCCCEEEESST-TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred HHHHHHHHcCCCceEEEEEeC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 8999999999 9999999764 4799999999999999999999999999 999999998754
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.92 E-value=6.3e-25 Score=214.53 Aligned_cols=189 Identities=19% Similarity=0.245 Sum_probs=138.7
Q ss_pred CCCcEEEEECCCC-CCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 286 KVNTHVYVTGLPD-DVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 286 ~~~~~VyV~nLP~-~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
..+++|||+|||+ ++|+++|+++|++||.|.. |+|++++ +|||||+|.+.++|.+||..|||..|.
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~--------v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~ 98 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQR--------VKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLH 98 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEE--------EEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEE--------EEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 4568999999999 9999999999999999997 9999874 899999999999999999999999996
Q ss_pred CCCCeeEEEecccccccchhhhhhhhchHHHHhHHHHH-hhhhcCCCC----CCCCCCCCcEEEEecccCCcccCcchhh
Q 009565 365 PDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVE-EKMLGWGGR----DDAKLTIPATVILRFMFTPAEMRADENL 439 (532)
Q Consensus 365 ~G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~-~k~~~~~~~----~~~~~~~~~~v~i~Nlf~p~~~~~D~~l 439 (532)
| +.|.|..+......... ....... ...... ......... ........++|+|.|| |..+.
T Consensus 99 -g--~~l~v~~a~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl--p~~~t----- 164 (229)
T 2adc_A 99 -G--KPIRITLSKHQNVQLPR--EGQEDQG--LTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNI--PPSVS----- 164 (229)
T ss_dssp -S--SBCEEECCSCCCCCCCC--SSSSTTT--TEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECC--CTTCC-----
T ss_pred -C--eEEEEEEecCccccCcc--ccccccc--cccccccCcccccCCccccccccCCCCCCEEEEeCC--CccCC-----
Confidence 5 56888877643110000 0000000 000000 000000000 0011223579999999 55442
Q ss_pred HHHHHHHHHHHhhccC-CeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeC-CeEEEEEeecCC
Q 009565 440 RSELEADVQEECVKIG-PVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFG-GRQIHASEDDGL 506 (532)
Q Consensus 440 ~~ei~edLre~fskfG-~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~-GR~I~V~~~dg~ 506 (532)
.++|+++|++|| .|..|.++.+ .+|+|||+|.+.++|.+|+..|||+.|+ |++|+|.|+..+
T Consensus 165 ----~~~l~~~f~~~G~~i~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 165 ----EEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ----HHHHHHHHHTTSCCEEEEEECSS-STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred ----HHHHHHHHHHcCCCeeEEEEEEC-CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 358999999999 9999999653 4799999999999999999999999999 999999997653
No 17
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.92 E-value=2.1e-24 Score=208.43 Aligned_cols=187 Identities=18% Similarity=0.183 Sum_probs=133.5
Q ss_pred CCcEEEEECCC-CCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 287 VNTHVYVTGLP-DDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 287 ~~~~VyV~nLP-~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
.+++|||+||| ..+|+++|+++|++||.|.+ |+|+++ .+|||||+|.+.++|..||+.|||..|.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~--------v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~- 68 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEK--------VKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMF- 68 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEE--------EEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEE--------EEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 46899999999 89999999999999999996 999875 3799999999999999999999999997
Q ss_pred CCCeeEEEecccccccchhhhhhhhchHHHHhHHHH-HhhhhcCCC----CCCCCCCCCcEEEEecccCCcccCcchhhH
Q 009565 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKV-EEKMLGWGG----RDDAKLTIPATVILRFMFTPAEMRADENLR 440 (532)
Q Consensus 366 G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~-~~k~~~~~~----~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~ 440 (532)
| ++|.|.+++................ ...... ..+...+.. .........++|+|+|| |..+.
T Consensus 69 g--~~l~v~~s~~~~~~p~~~~~~~~~~--~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NL--p~~~t------ 136 (205)
T 3tyt_A 69 G--QKMNVCVSKQPAIMPGQSYGLEDGS--CSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNA--PLEVT------ 136 (205)
T ss_dssp T--EECEEEECSCSCCCCCSCCBCTTSC--BSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEE--CTTCC------
T ss_pred C--ceEEEEEccCCccCCCcccccccCC--ccccccCCCccccccCcccccccccCCCcceEEEeCC--CCCCC------
Confidence 5 6789988764321000000000000 000000 000000000 00001123468999999 55542
Q ss_pred HHHHHHHHHHhhccCCe--eEEEEecc--CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCe----EEEEEe
Q 009565 441 SELEADVQEECVKIGPV--DSVKVCEN--HPQGVVLVRFKDRKDAQKCIELMNGRWFGGR----QIHASE 502 (532)
Q Consensus 441 ~ei~edLre~fskfG~V--~~V~l~~~--~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR----~I~V~~ 502 (532)
.++|+++|++||.| .+|+++.+ .++|+|||+|.+.++|.+||..|||..|.|+ ++.|.+
T Consensus 137 ---~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 137 ---EENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp ---HHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred ---HHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 25899999999999 89999876 4569999999999999999999999999997 566554
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.91 E-value=5.9e-24 Score=213.85 Aligned_cols=156 Identities=15% Similarity=0.228 Sum_probs=132.0
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
+..++|||+|||+++|+++|+++|+.||.|.. |+|++++ .+ ++|||||+|.+.++|..||. |||..|.
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~-~~-~~g~afV~f~~~~~A~~A~~-~~~~~~~- 106 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIH--------VDVADSL-KK-NFRFARIEFARYDGALAAIT-KTHKVVG- 106 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEE--------EEEEECT-TS-SSEEEEEEESSHHHHHHHHT-TTTCEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECC-CC-CcEEEEEEECCHHHHHHHHH-hCCcEeC-
Confidence 45699999999999999999999999999997 9999985 33 58999999999999999995 9999996
Q ss_pred CCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHH
Q 009565 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEA 445 (532)
Q Consensus 366 G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~e 445 (532)
| ++|.|..+. .++|+|+|| |..+. .+
T Consensus 107 g--~~i~v~~~~-----------------------------------------~~~l~v~nl--p~~~t---------~~ 132 (292)
T 2ghp_A 107 Q--NEIIVSHLT-----------------------------------------ECTLWMTNF--PPSYT---------QR 132 (292)
T ss_dssp T--EECEEEECC-----------------------------------------SCEEEEECC--CTTCC---------HH
T ss_pred C--cEEEEEECC-----------------------------------------CCEEEEECC--CCCCC---------HH
Confidence 5 567776542 358999999 55542 35
Q ss_pred HHHHHhhccC-CeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCCc
Q 009565 446 DVQEECVKIG-PVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLV 507 (532)
Q Consensus 446 dLre~fskfG-~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~~ 507 (532)
+|+++|++|| .|..|.++.+ .++|||||+|.+.++|.+|+..|||..|+|++|.|.++....
T Consensus 133 ~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 133 NIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp HHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred HHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCc
Confidence 8999999999 9999999865 478999999999999999999999999999999999987653
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.91 E-value=1.6e-23 Score=208.57 Aligned_cols=153 Identities=20% Similarity=0.359 Sum_probs=132.4
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|.+ ++|||||.|.+.++|..|+..|||..|.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~- 84 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSE--------VFINR------DRGFGFIRLESRTLAEIAKAELDGTILK- 84 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSE--------EEEET------TTTEEEEECSSHHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEE--------EEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEEC-
Confidence 45689999999999999999999999999996 88864 3799999999999999999999999996
Q ss_pred CCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHH
Q 009565 366 DGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEA 445 (532)
Q Consensus 366 G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~e 445 (532)
| +.|.|..+.. .++|+|.|| |...+ .+
T Consensus 85 g--~~l~v~~a~~----------------------------------------~~~l~v~nl--~~~~t---------~~ 111 (261)
T 3sde_A 85 S--RPLRIRFATH----------------------------------------GAALTVKNL--SPVVS---------NE 111 (261)
T ss_dssp T--EECEEEECCC----------------------------------------SSEEEEESC--CTTCC---------HH
T ss_pred C--ceeEeeeccc----------------------------------------CCcccccCC--CCCCC---------HH
Confidence 5 6788877651 248999999 54442 35
Q ss_pred HHHHHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHH-CCcEeC---CeEEEEEeecCC
Q 009565 446 DVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELM-NGRWFG---GRQIHASEDDGL 506 (532)
Q Consensus 446 dLre~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~L-nGr~f~---GR~I~V~~~dg~ 506 (532)
+|+++|++||.|.+|.|+.+ .++|+|||+|.+.++|.+||..| +|..+. ||+|.|.+....
T Consensus 112 ~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 112 LLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 89999999999999999865 56899999999999999999999 556665 999999998765
No 20
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.91 E-value=1.8e-23 Score=209.58 Aligned_cols=151 Identities=19% Similarity=0.294 Sum_probs=131.2
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
.+++|||+|||+++|+++|+++|+.|| |.. |++ +.++|||||+|.+.++|..|+..|||..+. |
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~--------~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~-g 84 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKY--------CFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLR-E 84 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEE--------EEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEET-T
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEE--------EEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeC-C
Confidence 458999999999999999999999999 775 766 467899999999999999999999999997 5
Q ss_pred CCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHHH
Q 009565 367 GKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEAD 446 (532)
Q Consensus 367 ~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~ed 446 (532)
++|.|..+. ..++|+|+|| |..+. .++
T Consensus 85 --~~i~v~~~~----------------------------------------~~~~l~v~nl--p~~~t---------~~~ 111 (284)
T 3smz_A 85 --RELSVQLQP----------------------------------------TDALLCVANL--PPSLT---------QQQ 111 (284)
T ss_dssp --EECEEEECC----------------------------------------CSCEEEEESC--CTTCC---------HHH
T ss_pred --eEEEEEecC----------------------------------------CCCEEEEcCC--CCcCC---------HHH
Confidence 567776532 1258999999 55542 358
Q ss_pred HHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCC
Q 009565 447 VQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGL 506 (532)
Q Consensus 447 Lre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~ 506 (532)
|+++|++||.|..|.++.+ .++|+|||+|.+.++|.+|+..|||..|+|++|.|.+....
T Consensus 112 l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 112 FEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAG 175 (284)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGG
T ss_pred HHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 9999999999999998754 46899999999999999999999999999999999998765
No 21
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.75 E-value=3.2e-18 Score=146.23 Aligned_cols=80 Identities=26% Similarity=0.424 Sum_probs=75.6
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
++|+|||+|||+++|+++|+++|++||.|.+ |+|++|+.+|.++|||||+|.+.++|.+||+.|||..|. |
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~-g 88 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVES--------AKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ-S 88 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET-T
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------eEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC-C
Confidence 5689999999999999999999999999997 999999999999999999999999999999999999996 5
Q ss_pred CCeeEEEeccc
Q 009565 367 GKIPMSVTQAK 377 (532)
Q Consensus 367 ~~~~I~V~~A~ 377 (532)
++|+|..|+
T Consensus 89 --r~l~V~~Ak 97 (99)
T 4fxv_A 89 --KTIKVSYAR 97 (99)
T ss_dssp --EECEEEECC
T ss_pred --EEEEEEEee
Confidence 679998886
No 22
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.74 E-value=7.7e-18 Score=148.02 Aligned_cols=89 Identities=30% Similarity=0.421 Sum_probs=82.2
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCe
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGR 496 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR 496 (532)
..+++|+|+|||++.++ .|+.+..++++||+++|++||.|.+|.|++++++|+|||+|.+.++|.+|+..|||++|+||
T Consensus 5 ~ps~vv~L~Nm~~~~e~-~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTE-EEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCSEEEEESSCCTTTC-CSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEECCCChHHc-cChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34679999999999986 56777899999999999999999999999888899999999999999999999999999999
Q ss_pred EEEEEeecCC
Q 009565 497 QIHASEDDGL 506 (532)
Q Consensus 497 ~I~V~~~dg~ 506 (532)
+|+|.|+...
T Consensus 84 ~i~v~~~~~~ 93 (114)
T 3s6e_A 84 MITAAYVPLP 93 (114)
T ss_dssp ECEEEEECHH
T ss_pred EEEEEEEcHH
Confidence 9999998754
No 23
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.74 E-value=1.2e-17 Score=144.56 Aligned_cols=88 Identities=30% Similarity=0.406 Sum_probs=80.2
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc------CCCcEEEEEeCCHHHHHHHHHHHCCc
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN------HPQGVVLVRFKDRKDAQKCIELMNGR 491 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~------~~kG~aFV~F~s~eeA~kAi~~LnGr 491 (532)
.+++|+|.|||+|.++.++.. +.+++++|+++|++||.|.+|.|+++ +++|+|||+|.+.++|.+|+..|||+
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~-~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEE-YEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHH-HHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCHHHccChHH-HHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 357999999999999876655 48999999999999999999999865 36899999999999999999999999
Q ss_pred EeCCeEEEEEeecCC
Q 009565 492 WFGGRQIHASEDDGL 506 (532)
Q Consensus 492 ~f~GR~I~V~~~dg~ 506 (532)
+|+||+|+|.|++..
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999999865
No 24
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.7e-17 Score=143.21 Aligned_cols=98 Identities=35% Similarity=0.700 Sum_probs=90.4
Q ss_pred CCCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeC
Q 009565 415 KLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFG 494 (532)
Q Consensus 415 ~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~ 494 (532)
.+..+++|+|+|||.+.++..++.++.+++++|+++|++||.|.+|.|++.+++|||||+|.+.++|.+|+..|||+.|+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 44556799999999998888888888999999999999999999998877789999999999999999999999999999
Q ss_pred CeEEEEEeecCCcccccC
Q 009565 495 GRQIHASEDDGLVNHAAI 512 (532)
Q Consensus 495 GR~I~V~~~dg~~~~~~~ 512 (532)
||+|+|.+++++++|...
T Consensus 91 gr~l~v~~a~~~~~~~~~ 108 (112)
T 2dit_A 91 GRQITAQAWDGTTDYQSG 108 (112)
T ss_dssp TEECEEEECCSCCCSSCC
T ss_pred CcEEEEEEeCCCCCcccC
Confidence 999999999999988754
No 25
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.71 E-value=2.7e-17 Score=143.96 Aligned_cols=78 Identities=19% Similarity=0.320 Sum_probs=71.6
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCC
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~ 367 (532)
.++|||+|||+++|+++|+++|++||.|.+ |+|++++ +.++|||||+|.+.++|.+||+.|||..|. |
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~--------v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~-g- 72 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILS--------CKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLN-D- 72 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEET-T-
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEE--------EEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEEC-C-
Confidence 478999999999999999999999999997 9999984 568999999999999999999999999996 5
Q ss_pred CeeEEEecccc
Q 009565 368 KIPMSVTQAKF 378 (532)
Q Consensus 368 ~~~I~V~~A~~ 378 (532)
++|.|.++..
T Consensus 73 -~~i~V~~a~~ 82 (115)
T 4f25_A 73 -RKVFVGRFKS 82 (115)
T ss_dssp -EECEEEESSC
T ss_pred -EEEEEEECCC
Confidence 6789988763
No 26
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.70 E-value=8.4e-17 Score=147.68 Aligned_cols=145 Identities=13% Similarity=0.156 Sum_probs=105.1
Q ss_pred EEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhh
Q 009565 326 IKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKM 405 (532)
Q Consensus 326 ikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~ 405 (532)
++|+.+. ..++|||||+|.+.++|++|+..+++.....| .+.+............
T Consensus 3 ~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~---~~~~~~~~~~~~~~~~-------------------- 57 (158)
T 2kn4_A 3 YKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDG---EWTYDDATKTFTVTEG-------------------- 57 (158)
T ss_dssp EEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCC---EEEEETTTTEEEEECC--------------------
T ss_pred EEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCC---cccccCcccccccccc--------------------
Confidence 6788873 47999999999999999999998887554312 1222222111000000
Q ss_pred hcCCCCCCCCCCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHH
Q 009565 406 LGWGGRDDAKLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDA 481 (532)
Q Consensus 406 ~~~~~~~~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA 481 (532)
.............++|||.|| |..++ .++|+++|++||.|..|.|+.+ +++|||||+|.+.++|
T Consensus 58 -~~~~~~~~~~~~~~~l~v~nl--~~~~~---------~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a 125 (158)
T 2kn4_A 58 -SHHHHHHMDVEGMTSLKVDNL--TYRTS---------PDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 125 (158)
T ss_dssp -CCCSSCCCCCCBCCEEEEESC--CTTCC---------HHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHH
T ss_pred -ccccccccCCCCCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHH
Confidence 000001112234569999999 55543 3589999999999999999865 5789999999999999
Q ss_pred HHHHHHHCCcEeCCeEEEEEeecCCc
Q 009565 482 QKCIELMNGRWFGGRQIHASEDDGLV 507 (532)
Q Consensus 482 ~kAi~~LnGr~f~GR~I~V~~~dg~~ 507 (532)
.+||..|||..|+||+|+|.++....
T Consensus 126 ~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 126 EDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp HHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred HHHHHHhCCCEECCeEEEEEECCCCC
Confidence 99999999999999999999998753
No 27
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.70 E-value=6.7e-17 Score=137.07 Aligned_cols=89 Identities=37% Similarity=0.650 Sum_probs=80.8
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|..+..++.|.|+|++++.+|+++|||||+|.+.++|.+||+.|||..|.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~- 89 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS- 89 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC-
Confidence 4679999999999999999999999999999766677777999999889999999999999999999999999999997
Q ss_pred CCCeeEEEeccc
Q 009565 366 DGKIPMSVTQAK 377 (532)
Q Consensus 366 G~~~~I~V~~A~ 377 (532)
| +.|+|..|+
T Consensus 90 g--~~l~V~~A~ 99 (99)
T 2la6_A 90 G--NPIKVSFAT 99 (99)
T ss_dssp S--SBCEEEECC
T ss_pred C--cEEEEEecC
Confidence 5 568887763
No 28
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-16 Score=137.83 Aligned_cols=91 Identities=38% Similarity=0.718 Sum_probs=84.2
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.+++.++.|.|+|++++.+|.++|||||+|.+.++|.+||..|||..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~- 91 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ- 91 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC-
Confidence 4679999999999999999999999999999878888888999999889999999999999999999999999999997
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| +.|.|..+...
T Consensus 92 g--~~l~V~~a~~~ 103 (113)
T 2cpe_A 92 G--SKLKVSLARKK 103 (113)
T ss_dssp T--EECEEECSSCC
T ss_pred C--CEEEEEECCCC
Confidence 5 67999988754
No 29
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=139.21 Aligned_cols=80 Identities=18% Similarity=0.123 Sum_probs=75.1
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCC
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~ 367 (532)
.++|||+|||+++|+++|+++|++||.|.+ |+|++|+.+|+++|||||+|.+.++|.+||+.|||..|. |
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~--------v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~-g- 75 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEE--------VEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM-G- 75 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET-T-
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeE--------EEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC-C-
Confidence 488999999999999999999999999997 999999999999999999999999999999999999997 5
Q ss_pred CeeEEEecccc
Q 009565 368 KIPMSVTQAKF 378 (532)
Q Consensus 368 ~~~I~V~~A~~ 378 (532)
+.|.|..+..
T Consensus 76 -r~i~V~~a~~ 85 (110)
T 3s8s_A 76 -NIIHAQLDIK 85 (110)
T ss_dssp -EECEEEECST
T ss_pred -eEEEEEECCC
Confidence 6789988863
No 30
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.67 E-value=4.7e-17 Score=136.67 Aligned_cols=80 Identities=15% Similarity=0.209 Sum_probs=72.1
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccC-ccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhC-CceecCC
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCG-IIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLD-GTPFRPD 366 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G-~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~Ln-G~~l~~G 366 (532)
++|||+|||+++|+++|+++|++|| .|.+ |+|++|+.+|.++|||||+|.+.++|.+||+.|+ +..|. |
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~--------v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~-g 72 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQARE--------VRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL-G 72 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSB--------CCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET-T
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEE--------EEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC-C
Confidence 6899999999999999999999999 7886 9999999999999999999999999999998875 55675 5
Q ss_pred CCeeEEEeccccc
Q 009565 367 GKIPMSVTQAKFE 379 (532)
Q Consensus 367 ~~~~I~V~~A~~~ 379 (532)
++|.|.++...
T Consensus 73 --r~i~V~~a~~~ 83 (91)
T 2lxi_A 73 --QKVSMHYSDPK 83 (91)
T ss_dssp --EEEEEECCCSC
T ss_pred --EEEEEEEcCCC
Confidence 67999988744
No 31
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.67 E-value=3.9e-16 Score=142.36 Aligned_cols=139 Identities=15% Similarity=0.190 Sum_probs=107.1
Q ss_pred CCCccccEEEEecCHHHHHHHHHHh-CCceecCCCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCC
Q 009565 334 TGMKKGDALVTYLKEPSVALATQLL-DGTPFRPDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRD 412 (532)
Q Consensus 334 tG~~kG~aFV~F~~~esA~~Al~~L-nG~~l~~G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~ 412 (532)
....+|+++|+|.+.+.|.+|+..| ||..+. | .|.+..+........... .......
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~-G---~~~~~~a~~~~~~~~~~~------------------~~~~~~~ 66 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVD-G---EWTYDDATKTFTVTEGSH------------------HHHHHMH 66 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCC-C---EEEEETTTTEEEEECSSS------------------SCCCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCC-C---ceecccccCccccccccc------------------ccccccc
Confidence 4578999999999999999999999 999996 4 578877653221100000 0000011
Q ss_pred CCCCCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcE
Q 009565 413 DAKLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRW 492 (532)
Q Consensus 413 ~~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~ 492 (532)
.......++|||+|| |..++. ++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|.+||..|||..
T Consensus 67 ~~~~~~~~~l~V~nl--~~~~t~---------~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~ 134 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNL--GNNGNK---------TELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRT 134 (150)
T ss_dssp SSSSTTSCEEEEESC--CSCCSC---------HHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSC
T ss_pred ccCCCCCCEEEEeCC--CCCCCH---------HHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCE
Confidence 223335679999999 555533 388999999999999999876 68999999999999999999999999
Q ss_pred eCCeEEEEEeecCC
Q 009565 493 FGGRQIHASEDDGL 506 (532)
Q Consensus 493 f~GR~I~V~~~dg~ 506 (532)
|+|++|+|.++.++
T Consensus 135 ~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 135 LCGCRVRVELSNGE 148 (150)
T ss_dssp SSSSCCEEEECCCC
T ss_pred ECCeEEEEEEcCCC
Confidence 99999999998765
No 32
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.67 E-value=9.5e-17 Score=136.40 Aligned_cols=79 Identities=18% Similarity=0.263 Sum_probs=71.8
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCc--cccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCce---
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGI--IKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTP--- 362 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~--I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~--- 362 (532)
=.+|||+|||+++|+++|+++|++||. |.. |+|++|+.+|++||||||+|.+.++|.+||+.|||..
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~--------v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~ 80 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNN--------IRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPL 80 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGG--------EECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEE--------EEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCc
Confidence 378999999999999999999999996 555 9999999999999999999999999999999999974
Q ss_pred -ecCCCCeeEEEeccc
Q 009565 363 -FRPDGKIPMSVTQAK 377 (532)
Q Consensus 363 -l~~G~~~~I~V~~A~ 377 (532)
|. | ++|.|.+|+
T Consensus 81 ~i~-G--r~i~V~~Ak 93 (95)
T 2lkz_A 81 KID-G--KTIGVDFAK 93 (95)
T ss_dssp EET-T--EEEEEEECC
T ss_pred eEC-C--EEEEEEEcc
Confidence 64 5 679999886
No 33
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.66 E-value=2.9e-16 Score=135.83 Aligned_cols=83 Identities=30% Similarity=0.452 Sum_probs=73.0
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc-----CCCcEEEEEeCCHHHHHHHHHHHCCcE
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN-----HPQGVVLVRFKDRKDAQKCIELMNGRW 492 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~-----~~kG~aFV~F~s~eeA~kAi~~LnGr~ 492 (532)
.+++|+|+|||.|.++. .+++++|+++|++||.|.+|.|+++ +++|+|||+|.+.++|.+|+..|||++
T Consensus 7 ~s~~l~l~Nm~~~~~l~------dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~ 80 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVD------EDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRY 80 (105)
T ss_dssp CCSEEEEESSSCSCCC---------CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCEEEEEcCCChHHhh------HHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCE
Confidence 45799999999887664 3467899999999999999999864 578999999999999999999999999
Q ss_pred eCCeEEEEEeecCC
Q 009565 493 FGGRQIHASEDDGL 506 (532)
Q Consensus 493 f~GR~I~V~~~dg~ 506 (532)
|+||+|+|.+++..
T Consensus 81 ~~Gr~i~v~~a~~~ 94 (105)
T 2pe8_A 81 FGGRVVKACFYNLD 94 (105)
T ss_dssp ETTEECEEEECCHH
T ss_pred ECCcEEEEEEcCHH
Confidence 99999999999863
No 34
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.66 E-value=2.6e-16 Score=139.06 Aligned_cols=84 Identities=32% Similarity=0.599 Sum_probs=74.7
Q ss_pred CcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccC--------CCcEEEEEeCCHHHHHHHHHHHCC
Q 009565 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENH--------PQGVVLVRFKDRKDAQKCIELMNG 490 (532)
Q Consensus 419 ~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~--------~kG~aFV~F~s~eeA~kAi~~LnG 490 (532)
+++|+|.|||+|.++.+ ++++||+++|++||.|.+|.|++++ ++|+|||+|.+.++|.+|+..|||
T Consensus 20 s~vl~L~Nm~~~~el~d------dleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnG 93 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDD------DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNG 93 (118)
T ss_dssp CCEEEEESCSCGGGCCT------THHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCHHHHHH------HHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCC
Confidence 56999999999887643 4789999999999999999998753 359999999999999999999999
Q ss_pred cEeCCeEEEEEeecCCccc
Q 009565 491 RWFGGRQIHASEDDGLVNH 509 (532)
Q Consensus 491 r~f~GR~I~V~~~dg~~~~ 509 (532)
++|+||+|+|.|++.. +|
T Consensus 94 r~f~GR~i~v~~~~~~-~f 111 (118)
T 3ue2_A 94 RWFAGRKVVAEVYDQE-RF 111 (118)
T ss_dssp CEETTEECEEEEECHH-HH
T ss_pred CEECCcEEEEEEcChH-hc
Confidence 9999999999999873 44
No 35
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.65 E-value=3.8e-16 Score=128.13 Aligned_cols=81 Identities=26% Similarity=0.339 Sum_probs=74.7
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+|++.|||..|.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 75 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITD--------IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF- 75 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEE--------EEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 35689999999999999999999999999996 999999889999999999999999999999999999996
Q ss_pred CCCeeEEEeccc
Q 009565 366 DGKIPMSVTQAK 377 (532)
Q Consensus 366 G~~~~I~V~~A~ 377 (532)
| ++|+|..++
T Consensus 76 g--~~l~v~~ak 85 (85)
T 3mdf_A 76 G--RTIRVNLAK 85 (85)
T ss_dssp T--EECEEEECC
T ss_pred C--cEEEEEEcC
Confidence 5 678888764
No 36
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.65 E-value=5.9e-16 Score=126.38 Aligned_cols=79 Identities=18% Similarity=0.266 Sum_probs=74.1
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCCC
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~~ 368 (532)
++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|..|+..|||..|. |
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~-g-- 70 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLS--------GHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN-G-- 70 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEE--------EEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET-T--
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC-C--
Confidence 68999999999999999999999999997 999999889999999999999999999999999999996 5
Q ss_pred eeEEEecccc
Q 009565 369 IPMSVTQAKF 378 (532)
Q Consensus 369 ~~I~V~~A~~ 378 (532)
++|.|..+..
T Consensus 71 ~~l~v~~a~~ 80 (83)
T 3md1_A 71 RPLRINWAAK 80 (83)
T ss_dssp EECEEEECCC
T ss_pred cEEEEEecCc
Confidence 6789988864
No 37
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.65 E-value=1.7e-16 Score=132.40 Aligned_cols=79 Identities=28% Similarity=0.266 Sum_probs=70.2
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccC--ccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCG--IIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G--~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
.+|||+|||+++|+++|+++|++|| .|.+ |+|++++.+|+++|||||+|.+.++|.+||+.|||..|. |
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~--------v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~-g 72 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILE--------IKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH-G 72 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCC--------EEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS-S
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEE--------EEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC-C
Confidence 5799999999999999999999999 8886 999999999999999999999999999999999999997 5
Q ss_pred CCeeEEEecccc
Q 009565 367 GKIPMSVTQAKF 378 (532)
Q Consensus 367 ~~~~I~V~~A~~ 378 (532)
+.|.|..+..
T Consensus 73 --r~i~V~~~~~ 82 (90)
T 3p5t_L 73 --QNPVVTPSNK 82 (90)
T ss_dssp --CCCEECCC--
T ss_pred --EEEEEEECCC
Confidence 5688888774
No 38
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.65 E-value=5.4e-16 Score=127.76 Aligned_cols=80 Identities=23% Similarity=0.356 Sum_probs=74.3
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+|||.++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|..|+..|||..|. |
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g 75 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISD--------ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG-G 75 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET-T
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC-C
Confidence 4589999999999999999999999999997 999999889999999999999999999999999999996 5
Q ss_pred CCeeEEEeccc
Q 009565 367 GKIPMSVTQAK 377 (532)
Q Consensus 367 ~~~~I~V~~A~ 377 (532)
+.|.|..+.
T Consensus 76 --~~l~v~~a~ 84 (87)
T 3bs9_A 76 --RQIRTNWAT 84 (87)
T ss_dssp --EECEEEEEC
T ss_pred --eEEEEEecC
Confidence 678888876
No 39
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1e-15 Score=128.23 Aligned_cols=81 Identities=25% Similarity=0.296 Sum_probs=75.6
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..+++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+||..|||..|.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 83 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIAD--------VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD- 83 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEE--------EEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeE--------EEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 45689999999999999999999999999996 999999889999999999999999999999999999996
Q ss_pred CCCeeEEEeccc
Q 009565 366 DGKIPMSVTQAK 377 (532)
Q Consensus 366 G~~~~I~V~~A~ 377 (532)
| ++|.|..++
T Consensus 84 g--~~l~v~~a~ 93 (95)
T 2cqc_A 84 G--RRIRVSGPS 93 (95)
T ss_dssp T--EEEEEECCS
T ss_pred C--EEEEEEecC
Confidence 5 679998876
No 40
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=7.1e-16 Score=129.03 Aligned_cols=81 Identities=26% Similarity=0.407 Sum_probs=74.8
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+||+.|||..|.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 84 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVK--------VTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF- 84 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEE--------EEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEE--------EEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC-
Confidence 34588999999999999999999999999996 999999888999999999999999999999999999997
Q ss_pred CCCeeEEEeccc
Q 009565 366 DGKIPMSVTQAK 377 (532)
Q Consensus 366 G~~~~I~V~~A~ 377 (532)
| ++|.|..|+
T Consensus 85 g--~~l~v~~ak 94 (94)
T 2e5h_A 85 G--RVIKASIAI 94 (94)
T ss_dssp T--EEEEEEECC
T ss_pred C--cEEEEEecC
Confidence 5 678888764
No 41
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=9.4e-16 Score=128.55 Aligned_cols=82 Identities=24% Similarity=0.367 Sum_probs=75.7
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+||..|||..|. |
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g 74 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDN--------IVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA-G 74 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS-S
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeE--------EEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC-C
Confidence 4589999999999999999999999999997 999999889999999999999999999999999999997 5
Q ss_pred CCeeEEEeccccc
Q 009565 367 GKIPMSVTQAKFE 379 (532)
Q Consensus 367 ~~~~I~V~~A~~~ 379 (532)
++|+|..+...
T Consensus 75 --~~l~V~~a~~~ 85 (95)
T 2dnz_A 75 --RPMRVGHVTER 85 (95)
T ss_dssp --SCCEEEESSCC
T ss_pred --cEEEEEEcccc
Confidence 56888888743
No 42
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.63 E-value=2.3e-16 Score=134.50 Aligned_cols=81 Identities=21% Similarity=0.269 Sum_probs=74.8
Q ss_pred CCcEEEEECCCC------CCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCC
Q 009565 287 VNTHVYVTGLPD------DVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDG 360 (532)
Q Consensus 287 ~~~~VyV~nLP~------~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG 360 (532)
.+++|||+|||+ ++++++|+++|++||.|.+ |+|++++.||+++|||||+|.+.++|.+||..|||
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~--------v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng 76 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVN--------MEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG 76 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEE--------EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeE--------EEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 468999999999 9999999999999999997 99999998999999999999999999999999999
Q ss_pred ceecCCCCeeEEEeccc
Q 009565 361 TPFRPDGKIPMSVTQAK 377 (532)
Q Consensus 361 ~~l~~G~~~~I~V~~A~ 377 (532)
..|. | .++|.|..+.
T Consensus 77 ~~~~-g-~r~l~V~~a~ 91 (100)
T 3ns6_A 77 KRLD-L-KHRLFLYTMK 91 (100)
T ss_dssp CBSS-S-SCBCEEEESH
T ss_pred cccC-C-CeEEEEEECc
Confidence 9996 4 2468888876
No 43
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.63 E-value=1.5e-15 Score=129.73 Aligned_cols=84 Identities=21% Similarity=0.357 Sum_probs=75.3
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
.+++|||+|||+++|+++|+++|++||.|.. |+|++++ +|.++|||||+|.+.++|.+||..|||..+..|
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg 84 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDE--------CTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPG 84 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 4689999999999999999999999999997 9999996 899999999999999999999999999999733
Q ss_pred CCeeEEEeccccc
Q 009565 367 GKIPMSVTQAKFE 379 (532)
Q Consensus 367 ~~~~I~V~~A~~~ 379 (532)
..++|.|.++...
T Consensus 85 ~~~~l~V~~a~~~ 97 (105)
T 2dnh_A 85 ASSSLVVKFADTD 97 (105)
T ss_dssp CSSCCEEEESCSS
T ss_pred CCccEEEEECccC
Confidence 2356889888743
No 44
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.9e-16 Score=129.26 Aligned_cols=82 Identities=22% Similarity=0.376 Sum_probs=75.9
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeE-EEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRI-KIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~pri-kl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
.+++|||+|||+++|+++|+++|++||.|.. | +|++++.+|.++|||||+|.+.++|.+||..|||..|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 74 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQ--------TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC- 74 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSS--------CCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 4689999999999999999999999999997 8 99999889999999999999999999999999999996
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| ++|.|..+...
T Consensus 75 g--~~l~v~~a~~~ 86 (96)
T 1x5t_A 75 N--RPITVSYAFKK 86 (96)
T ss_dssp T--EECEEEESCCC
T ss_pred C--EEEEEEEeccc
Confidence 5 67899888743
No 45
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=9.6e-16 Score=129.61 Aligned_cols=83 Identities=23% Similarity=0.317 Sum_probs=76.4
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+||..|||..|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 76 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSE--------LHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ- 76 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEE--------EECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeE--------EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 45689999999999999999999999999996 999999889999999999999999999999999999997
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| ++|.|..+...
T Consensus 77 g--~~l~V~~a~~~ 88 (99)
T 1whw_A 77 G--RMLHVLPSTIK 88 (99)
T ss_dssp S--CEEEEEECCCC
T ss_pred C--cEEEEEEcCCC
Confidence 5 56899888744
No 46
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.63 E-value=9.2e-16 Score=129.27 Aligned_cols=81 Identities=25% Similarity=0.362 Sum_probs=75.6
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCC
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~ 367 (532)
+++|||+|||.++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+|+..|||..|. |
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g- 71 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVIN--------LKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG-S- 71 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET-T-
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEE--------EEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC-C-
Confidence 489999999999999999999999999997 999999889999999999999999999999999999996 5
Q ss_pred CeeEEEeccccc
Q 009565 368 KIPMSVTQAKFE 379 (532)
Q Consensus 368 ~~~I~V~~A~~~ 379 (532)
+.|.|..+...
T Consensus 72 -~~l~V~~a~~~ 82 (96)
T 2x1f_A 72 -RFLKCGYSSNS 82 (96)
T ss_dssp -EECEEEECSCS
T ss_pred -eEEEEEEcCCC
Confidence 67999988744
No 47
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.7e-16 Score=130.66 Aligned_cols=83 Identities=28% Similarity=0.382 Sum_probs=76.7
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+||..|||..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 83 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISR--------IYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD- 83 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEE--------EEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEE--------EEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC-
Confidence 45699999999999999999999999999997 999999889999999999999999999999999999996
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| +.|.|.++...
T Consensus 84 g--~~l~v~~a~~~ 95 (103)
T 2cq0_A 84 H--LILNVEWAKPS 95 (103)
T ss_dssp T--EECEEEESSCC
T ss_pred C--cEEEEEECCCC
Confidence 5 67899888744
No 48
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=129.96 Aligned_cols=83 Identities=25% Similarity=0.425 Sum_probs=76.4
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+||..|||..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 83 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVN--------THMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY- 83 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEE--------EECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC-
Confidence 46699999999999999999999999999996 999999889999999999999999999999999999996
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| ++|.|..+...
T Consensus 84 g--~~l~v~~a~~~ 95 (105)
T 1x5u_A 84 G--KPIRVNKASAH 95 (105)
T ss_dssp S--CBCEEEETTTT
T ss_pred C--eEEEEEECCCC
Confidence 5 56888888743
No 49
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.8e-15 Score=128.23 Aligned_cols=82 Identities=24% Similarity=0.433 Sum_probs=74.8
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|++++ +|.++|||||+|.+.++|.+||..|||..|.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 84 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKD--------LRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIK- 84 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEE--------EEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 35588999999999999999999999999996 9999996 8999999999999999999999999999996
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| ++|.|..+...
T Consensus 85 g--~~l~v~~a~~~ 96 (100)
T 2do4_A 85 E--NIIKVAISNSG 96 (100)
T ss_dssp S--CEEEEEECCCC
T ss_pred C--EEEEEEECCCC
Confidence 5 56888888643
No 50
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.62 E-value=1.4e-15 Score=130.20 Aligned_cols=86 Identities=26% Similarity=0.407 Sum_probs=76.7
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+||..|||..+..
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 82 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYE--------LTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLP 82 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCE--------EECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 45689999999999999999999999999997 9999998899999999999999999999999999998732
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
|..++|.|.++...
T Consensus 83 ~~g~~l~v~~a~~~ 96 (106)
T 2dgp_A 83 GMNRPIQVKPADSE 96 (106)
T ss_dssp TCSSCCEEEECCCC
T ss_pred CCCceEEEEECCcc
Confidence 33367899888754
No 51
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=8.9e-16 Score=130.89 Aligned_cols=83 Identities=19% Similarity=0.271 Sum_probs=76.6
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |.|++++.+|.++|||||+|.+.++|.+||..|||..|.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 81 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGD--------VYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD- 81 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT-
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 56799999999999999999999999999996 999999889999999999999999999999999999997
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| +.|.|..+...
T Consensus 82 g--~~l~V~~a~~~ 93 (103)
T 2dnm_A 82 G--RELRVQVARYG 93 (103)
T ss_dssp T--BCCEEEECSSC
T ss_pred C--cEEEEEECCcC
Confidence 5 56888888743
No 52
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.62 E-value=1.3e-15 Score=125.90 Aligned_cols=79 Identities=28% Similarity=0.434 Sum_probs=73.8
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCC
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~ 367 (532)
.++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+|+ .|||..|. |
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~-g- 74 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNR--------VTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR-G- 74 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEE--------EEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET-T-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC-C-
Confidence 478999999999999999999999999997 999999889999999999999999999999 99999996 5
Q ss_pred CeeEEEecccc
Q 009565 368 KIPMSVTQAKF 378 (532)
Q Consensus 368 ~~~I~V~~A~~ 378 (532)
+.|.|..++.
T Consensus 75 -~~l~V~~a~~ 84 (89)
T 3ucg_A 75 -RQIKVIPKRT 84 (89)
T ss_dssp -EECEEEETTT
T ss_pred -cEEEEEEccC
Confidence 6789988864
No 53
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=9.1e-16 Score=129.76 Aligned_cols=85 Identities=14% Similarity=0.287 Sum_probs=76.2
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccc-cCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIK-EDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~-~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
...++|||+|||+++|+++|+++|++||.|. . |+|++++.+|.++|||||+|.+.++|.+||..|||..|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 78 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMS--------VKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP 78 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCE--------EEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceE--------EEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC
Confidence 3569999999999999999999999999998 7 999999889999999999999999999999999999997
Q ss_pred CCCC--eeEEEeccccc
Q 009565 365 PDGK--IPMSVTQAKFE 379 (532)
Q Consensus 365 ~G~~--~~I~V~~A~~~ 379 (532)
|.. ++|+|.++...
T Consensus 79 -g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 79 -GATPAKRFKLNYATYS 94 (99)
T ss_dssp -SCSSCEECCEEETTCC
T ss_pred -CCCcceeEEEeecCCC
Confidence 543 22888887643
No 54
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.62 E-value=1.9e-15 Score=131.59 Aligned_cols=82 Identities=20% Similarity=0.357 Sum_probs=76.0
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+||..|||..|. |
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g 94 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVS--------AKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG-M 94 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSE--------EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET-T
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC-C
Confidence 4588999999999999999999999999996 999999889999999999999999999999999999996 5
Q ss_pred CCeeEEEeccccc
Q 009565 367 GKIPMSVTQAKFE 379 (532)
Q Consensus 367 ~~~~I~V~~A~~~ 379 (532)
++|+|..+...
T Consensus 95 --~~l~V~~a~~~ 105 (115)
T 2cpz_A 95 --KRLKVQLKRSK 105 (115)
T ss_dssp --EECEEECCCCS
T ss_pred --EEEEEEEcCCC
Confidence 67999888743
No 55
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=131.53 Aligned_cols=81 Identities=26% Similarity=0.408 Sum_probs=75.1
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+||+.|||..|.
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~- 94 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIES--------IQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA- 94 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEE--------EEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 35589999999999999999999999999996 999999889999999999999999999999999999996
Q ss_pred CCCeeEEEeccc
Q 009565 366 DGKIPMSVTQAK 377 (532)
Q Consensus 366 G~~~~I~V~~A~ 377 (532)
| ++|.|..+.
T Consensus 95 g--~~l~V~~a~ 104 (108)
T 2jrs_A 95 G--RPMKVGHVT 104 (108)
T ss_dssp S--SCCEEECSC
T ss_pred C--EEEEEEEcc
Confidence 5 568888876
No 56
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.62 E-value=2.6e-15 Score=130.48 Aligned_cols=83 Identities=23% Similarity=0.349 Sum_probs=76.8
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+||..|||..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 83 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISD--------ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG- 83 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET-
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 45699999999999999999999999999996 999999889999999999999999999999999999996
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| +.|.|.++...
T Consensus 84 g--~~l~V~~a~~~ 95 (115)
T 2dgo_A 84 G--RQIRTNWATRK 95 (115)
T ss_dssp T--EECEEEESSCC
T ss_pred C--EEEEEEEccCC
Confidence 5 67899888744
No 57
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=130.11 Aligned_cols=82 Identities=29% Similarity=0.424 Sum_probs=75.6
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..+++|||+|||+++|+++|+++|++||.|.. |.|++++.+|.++|||||+|.+.++|.+||..|||..|.
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 91 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKN--------IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM- 91 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEE--------EEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC-
Confidence 35689999999999999999999999999997 999999989999999999999999999999999999996
Q ss_pred CCCeeEEEecccc
Q 009565 366 DGKIPMSVTQAKF 378 (532)
Q Consensus 366 G~~~~I~V~~A~~ 378 (532)
| +.|.|..+..
T Consensus 92 g--~~l~V~~a~~ 102 (106)
T 1p27_B 92 G--QPISVDWCFV 102 (106)
T ss_dssp S--SBCEEEESEE
T ss_pred C--cEEEEEeecC
Confidence 5 5688888764
No 58
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1e-15 Score=130.15 Aligned_cols=83 Identities=25% Similarity=0.307 Sum_probs=76.6
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+||..|||..|.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 80 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITD--------IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF- 80 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCC--------EECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEE--------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 35588999999999999999999999999997 999999889999999999999999999999999999996
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| ++|.|..+...
T Consensus 81 g--~~l~V~~a~~~ 92 (102)
T 2cqb_A 81 G--RTIRVNLAKPM 92 (102)
T ss_dssp T--EEEEEEECCCC
T ss_pred C--cEEEEEeCCCC
Confidence 5 67999888754
No 59
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.61 E-value=2.1e-15 Score=124.46 Aligned_cols=79 Identities=19% Similarity=0.310 Sum_probs=71.5
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+||. +++..|.
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~- 78 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVD--------CTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLD- 78 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEE--------EEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEEC-
Confidence 45689999999999999999999999999997 9999998899999999999999999999995 5788886
Q ss_pred CCCeeEEEecc
Q 009565 366 DGKIPMSVTQA 376 (532)
Q Consensus 366 G~~~~I~V~~A 376 (532)
| +.|.|..|
T Consensus 79 g--~~i~v~~A 87 (87)
T 3s7r_A 79 G--RVIDPKKA 87 (87)
T ss_dssp T--EEEEEEEC
T ss_pred C--EEEEEEeC
Confidence 5 67888764
No 60
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=128.16 Aligned_cols=82 Identities=23% Similarity=0.382 Sum_probs=75.0
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+||. |||..|.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~- 77 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTE--------VVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM- 77 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEE--------EEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC-
Confidence 45699999999999999999999999999997 9999998899999999999999999999998 9999996
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| ++|.|.++...
T Consensus 78 g--~~l~V~~a~~~ 89 (99)
T 2dgs_A 78 G--KKVEVKRAEPR 89 (99)
T ss_dssp S--CBCEEEECCCC
T ss_pred C--eEEEEEECCCC
Confidence 5 56888887743
No 61
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.2e-15 Score=129.75 Aligned_cols=83 Identities=27% Similarity=0.347 Sum_probs=75.8
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|++++.++.++|||||+|.+.++|.+||..|||..|.
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 80 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISE--------VVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD- 80 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCE--------EEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEE--------EEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 45689999999999999999999999999996 999999889999999999999999999999999999997
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| ++|.|.++...
T Consensus 81 g--~~l~v~~a~~~ 92 (102)
T 1x5s_A 81 G--RQIRVDQAGKS 92 (102)
T ss_dssp S--CCCEEEEEECC
T ss_pred C--eEEEEEECCCC
Confidence 5 56888887643
No 62
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=140.31 Aligned_cols=81 Identities=26% Similarity=0.280 Sum_probs=74.6
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccC--ccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCG--IIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G--~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
..++|||+|||+++|+++|+++|++|| .|.. |+|++|+.+|+++|||||+|.+.++|.+||..|||..|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~--------v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~ 125 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVE--------LKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN 125 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEE--------EEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 458999999999999999999999999 8886 999999999999999999999999999999999999996
Q ss_pred CCCCeeEEEecccc
Q 009565 365 PDGKIPMSVTQAKF 378 (532)
Q Consensus 365 ~G~~~~I~V~~A~~ 378 (532)
| +.|.|..+..
T Consensus 126 -G--r~l~V~~a~~ 136 (156)
T 3n9u_C 126 -G--EKVDVRPATR 136 (156)
T ss_dssp -T--EECEEEECCH
T ss_pred -C--eEeEEEEcCC
Confidence 5 6799998873
No 63
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.4e-15 Score=128.28 Aligned_cols=82 Identities=24% Similarity=0.280 Sum_probs=74.7
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCC---CCCccccEEEEecCHHHHHHHHHHhCCcee
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKE---TGMKKGDALVTYLKEPSVALATQLLDGTPF 363 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~---tG~~kG~aFV~F~~~esA~~Al~~LnG~~l 363 (532)
.+++|||+|||+++|+++|+++|++||.|.. |+|++++. ++.++|||||+|.+.++|.+||..|||..|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 75 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKS--------CTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV 75 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee
Confidence 4588999999999999999999999999996 99999876 669999999999999999999999999999
Q ss_pred cCCCCeeEEEeccccc
Q 009565 364 RPDGKIPMSVTQAKFE 379 (532)
Q Consensus 364 ~~G~~~~I~V~~A~~~ 379 (532)
. | ++|.|.++...
T Consensus 76 ~-g--~~l~V~~a~~~ 88 (98)
T 2cpf_A 76 D-G--HKLEVRISERA 88 (98)
T ss_dssp T-T--EECEEECSSCS
T ss_pred C-C--eEEEEEEccCC
Confidence 7 5 67999988744
No 64
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.61 E-value=2.4e-15 Score=125.99 Aligned_cols=80 Identities=26% Similarity=0.427 Sum_probs=73.8
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|++++ +|.++|||||+|.+.++|.+||..|||..|.
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 83 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTK--------VTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLY- 83 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEE--------EEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 35689999999999999999999999999996 9999996 5999999999999999999999999999997
Q ss_pred CCCeeEEEeccc
Q 009565 366 DGKIPMSVTQAK 377 (532)
Q Consensus 366 G~~~~I~V~~A~ 377 (532)
| ++|.|..++
T Consensus 84 g--~~l~V~~a~ 93 (95)
T 2ywk_A 84 G--RPINVSGPS 93 (95)
T ss_dssp T--EECEEECCC
T ss_pred C--CEEEEEEcC
Confidence 5 678998875
No 65
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.60 E-value=1.9e-15 Score=132.05 Aligned_cols=81 Identities=20% Similarity=0.360 Sum_probs=74.0
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+||+.|||..|.
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 108 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVIS--------AKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG- 108 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEE--------EEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 45689999999999999999999999999997 999999889999999999999999999999999999996
Q ss_pred CCCeeEEEeccc
Q 009565 366 DGKIPMSVTQAK 377 (532)
Q Consensus 366 G~~~~I~V~~A~ 377 (532)
| ++|+|..++
T Consensus 109 g--~~l~V~~ak 118 (118)
T 2khc_A 109 T--KRLKVQLKK 118 (118)
T ss_dssp T--EECCEEEC-
T ss_pred C--EEEEEEecC
Confidence 5 668887653
No 66
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.60 E-value=1.9e-15 Score=126.67 Aligned_cols=79 Identities=20% Similarity=0.331 Sum_probs=73.2
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCC
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~ 367 (532)
.++|||+|||+++|+++|+++|++||.|.. +.+++++.+|+++|||||+|.+.++|.+||..|||..|. |
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~-g- 84 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPG--------SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG-S- 84 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTT--------CCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET-T-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccc--------eEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC-C-
Confidence 489999999999999999999999999986 888888889999999999999999999999999999996 5
Q ss_pred CeeEEEeccc
Q 009565 368 KIPMSVTQAK 377 (532)
Q Consensus 368 ~~~I~V~~A~ 377 (532)
++|.|..+.
T Consensus 85 -r~l~v~~a~ 93 (95)
T 2ek1_A 85 -RKVKLSGPS 93 (95)
T ss_dssp -EECEEECCC
T ss_pred -cEEEEEecc
Confidence 678888775
No 67
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.60 E-value=8.3e-16 Score=123.35 Aligned_cols=75 Identities=23% Similarity=0.370 Sum_probs=69.0
Q ss_pred EEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCCCe
Q 009565 290 HVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKI 369 (532)
Q Consensus 290 ~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~~~ 369 (532)
+|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+|+. |||..|. | +
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~-g--~ 68 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDD--------AMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN-N--K 68 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSE--------ECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS-S--C
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC-C--E
Confidence 4999999999999999999999999997 9999998899999999999999999999997 9999996 5 5
Q ss_pred eEEEecc
Q 009565 370 PMSVTQA 376 (532)
Q Consensus 370 ~I~V~~A 376 (532)
+|.|.+|
T Consensus 69 ~l~v~~A 75 (75)
T 2mss_A 69 MVECKKA 75 (75)
T ss_dssp CCEEECC
T ss_pred EEEEEeC
Confidence 5787764
No 68
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.60 E-value=3e-15 Score=128.32 Aligned_cols=80 Identities=21% Similarity=0.394 Sum_probs=74.1
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..+++|||+|||+++|+++|+++|++||.|.. |+|++++ +|.++|||||+|.+.++|.+||..|||..|.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 96 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKK--------AAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLD- 96 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeC-
Confidence 46699999999999999999999999999996 9999997 9999999999999999999999999999996
Q ss_pred CCCeeEEEeccc
Q 009565 366 DGKIPMSVTQAK 377 (532)
Q Consensus 366 G~~~~I~V~~A~ 377 (532)
| +.|.|..+.
T Consensus 97 g--~~l~V~~a~ 106 (107)
T 3ulh_A 97 G--RPMNIQLVT 106 (107)
T ss_dssp T--EECEEEEEC
T ss_pred C--cEEEEEEeC
Confidence 5 678887764
No 69
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.60 E-value=3e-15 Score=129.07 Aligned_cols=82 Identities=27% Similarity=0.400 Sum_probs=76.0
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..+++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+||..|||..|.
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~- 94 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKN--------IHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM- 94 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 45689999999999999999999999999997 999999889999999999999999999999999999996
Q ss_pred CCCeeEEEecccc
Q 009565 366 DGKIPMSVTQAKF 378 (532)
Q Consensus 366 G~~~~I~V~~A~~ 378 (532)
| ++|.|.++..
T Consensus 95 g--~~l~V~~a~~ 105 (110)
T 1oo0_B 95 G--QTIQVDWCFV 105 (110)
T ss_dssp T--EECEEEESEE
T ss_pred C--cEEEEEEccc
Confidence 5 6789988864
No 70
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=3.4e-15 Score=126.00 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=74.0
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. +.++.++.+|+++|||||+|.+.++|.+||..|||..|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~--------~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~- 83 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPG--------SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG- 83 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTT--------TCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccc--------eEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC-
Confidence 35689999999999999999999999999986 778888789999999999999999999999999999996
Q ss_pred CCCeeEEEeccc
Q 009565 366 DGKIPMSVTQAK 377 (532)
Q Consensus 366 G~~~~I~V~~A~ 377 (532)
| ++|.|..+.
T Consensus 84 g--~~l~V~~a~ 93 (98)
T 2cqp_A 84 S--RKVKLVLGS 93 (98)
T ss_dssp T--EECEEEESS
T ss_pred C--eEEEEEEcC
Confidence 5 678888876
No 71
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.4e-15 Score=129.71 Aligned_cols=83 Identities=18% Similarity=0.272 Sum_probs=76.3
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhC------
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLD------ 359 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~Ln------ 359 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+||..||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~ 84 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKY--------VRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGG 84 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccC
Confidence 45688999999999999999999999999996 9999999899999999999999999999999999
Q ss_pred CceecCCCCeeEEEeccccc
Q 009565 360 GTPFRPDGKIPMSVTQAKFE 379 (532)
Q Consensus 360 G~~l~~G~~~~I~V~~A~~~ 379 (532)
|..|. | ++|.|.++...
T Consensus 85 ~~~~~-g--~~l~v~~a~~~ 101 (111)
T 1x4h_A 85 GLKLD-G--RQLKVDLAVTR 101 (111)
T ss_dssp CEESS-S--CEEEEECCCCC
T ss_pred CcEEc-C--EEEEEEECCCC
Confidence 99996 5 57899888743
No 72
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-15 Score=131.49 Aligned_cols=78 Identities=19% Similarity=0.334 Sum_probs=70.2
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+|||+++|+++|+++|++||.|.+ |+|++++. |.++|||||+|.+.++|..||. +||..|. |
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~--------v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~-g 78 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLN--------IQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYK-E 78 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEE--------EEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCT-T
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEE--------EEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEEC-C
Confidence 4588999999999999999999999999997 99999976 9999999999999999999998 9999996 6
Q ss_pred CCeeEEEeccc
Q 009565 367 GKIPMSVTQAK 377 (532)
Q Consensus 367 ~~~~I~V~~A~ 377 (532)
+.|.|..+.
T Consensus 79 --r~l~V~~~~ 87 (103)
T 1s79_A 79 --TDLLILFKD 87 (103)
T ss_dssp --TTCEEEEHH
T ss_pred --EEEEEEEch
Confidence 456776544
No 73
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5e-16 Score=127.70 Aligned_cols=80 Identities=20% Similarity=0.263 Sum_probs=72.4
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..+++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|..||..|||..|.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 73 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVS--------TKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ- 73 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEE--------EEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC-
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe-
Confidence 34689999999999999999999999999997 999999889999999999999999999999999999996
Q ss_pred CCCeeEEEecc
Q 009565 366 DGKIPMSVTQA 376 (532)
Q Consensus 366 G~~~~I~V~~A 376 (532)
| +.|+++++
T Consensus 74 g--~~~~~~~~ 82 (85)
T 1x4e_A 74 A--QMAKQSGP 82 (85)
T ss_dssp E--ESCCSSCC
T ss_pred e--EEEeecCC
Confidence 4 45666554
No 74
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.60 E-value=1.9e-15 Score=124.51 Aligned_cols=81 Identities=26% Similarity=0.329 Sum_probs=73.3
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCC-ccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGM-KKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~-~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..++|||+|||+++|+++|+++|++||.|.. |+|++++.++. ++|||||+|.+.++|.+|+..|||..|.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 73 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKM--------IDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID- 73 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEE--------EECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC-
Confidence 3589999999999999999999999999996 99999877666 9999999999999999999999999996
Q ss_pred CCCeeEEEecccc
Q 009565 366 DGKIPMSVTQAKF 378 (532)
Q Consensus 366 G~~~~I~V~~A~~ 378 (532)
| +.|.|..+..
T Consensus 74 g--~~l~v~~a~~ 84 (88)
T 4a8x_A 74 G--QEITATAVLA 84 (88)
T ss_dssp T--EECEEEEECC
T ss_pred C--eEEEEEECCC
Confidence 5 6788887753
No 75
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.2e-15 Score=122.73 Aligned_cols=76 Identities=21% Similarity=0.285 Sum_probs=69.5
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCCC
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~~ 368 (532)
++|||+|||+++|+++|+++|++||.|.. |.|++++.+|.++|||||+|.+.++|.+|+..++ ..+. |
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~-g-- 68 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKE--------CLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD-S-- 68 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCC--------EEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCS-S--
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccC-C--
Confidence 57999999999999999999999999997 9999998899999999999999999999999999 7786 5
Q ss_pred eeEEEecc
Q 009565 369 IPMSVTQA 376 (532)
Q Consensus 369 ~~I~V~~A 376 (532)
++|.|..|
T Consensus 69 ~~l~v~~a 76 (77)
T 1uaw_A 69 KTIDPKVA 76 (77)
T ss_dssp CCCEEEEC
T ss_pred EEEEEEec
Confidence 45777665
No 76
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3.7e-15 Score=127.63 Aligned_cols=83 Identities=20% Similarity=0.334 Sum_probs=75.6
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEec-CCCCCccccEEEEecCHHHHHHHHHHh-CCcee
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVD-KETGMKKGDALVTYLKEPSVALATQLL-DGTPF 363 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d-~~tG~~kG~aFV~F~~~esA~~Al~~L-nG~~l 363 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|+++ +.+|.++|||||+|.+.++|.+||..| ||..|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 84 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKT--------VRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL 84 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEE--------EEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE
Confidence 35688999999999999999999999999997 999998 679999999999999999999999999 99999
Q ss_pred cCCCCeeEEEeccccc
Q 009565 364 RPDGKIPMSVTQAKFE 379 (532)
Q Consensus 364 ~~G~~~~I~V~~A~~~ 379 (532)
. | ++|.|.++...
T Consensus 85 ~-g--~~l~v~~a~~~ 97 (107)
T 2cph_A 85 Y-G--RRLVLEWADSE 97 (107)
T ss_dssp S-S--CBCEEEECCCC
T ss_pred C-C--CEEEEEeCCCC
Confidence 7 5 56888888743
No 77
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.59 E-value=3.5e-15 Score=130.79 Aligned_cols=81 Identities=23% Similarity=0.376 Sum_probs=74.6
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |.|++++ +|.++|||||+|.+.++|.+||..|||..|.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~- 74 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISE--------VLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLH- 74 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSE--------EEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 45689999999999999999999999999996 9999996 9999999999999999999999999999997
Q ss_pred CCCeeEEEecccc
Q 009565 366 DGKIPMSVTQAKF 378 (532)
Q Consensus 366 G~~~~I~V~~A~~ 378 (532)
| +.|.|..++.
T Consensus 75 g--~~l~V~~a~~ 85 (116)
T 2fy1_A 75 G--KAIKVEQAKK 85 (116)
T ss_dssp S--SBCEEEECCC
T ss_pred C--EEEEEEECCC
Confidence 5 5688888874
No 78
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.59 E-value=4.8e-15 Score=133.17 Aligned_cols=83 Identities=24% Similarity=0.338 Sum_probs=76.5
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||.++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+||..|||..|.
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 110 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIES--------VKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL- 110 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEE--------EEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 45689999999999999999999999999997 999999889999999999999999999999999999996
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| +.|.|..+...
T Consensus 111 g--~~l~v~~a~~~ 122 (139)
T 1u6f_A 111 N--KRLKVALAASG 122 (139)
T ss_dssp S--CEEEEEESSCC
T ss_pred C--eEEEEEECCCC
Confidence 5 56889888743
No 79
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.3e-15 Score=128.24 Aligned_cols=81 Identities=26% Similarity=0.442 Sum_probs=74.9
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+||..|||..|. |
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~--------~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g 77 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVS--------FRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS-G 77 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSE--------EEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS-S
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeE--------EEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC-C
Confidence 4588999999999999999999999999996 999999889999999999999999999999999999996 5
Q ss_pred CCeeEEEecccc
Q 009565 367 GKIPMSVTQAKF 378 (532)
Q Consensus 367 ~~~~I~V~~A~~ 378 (532)
+.|.|..+..
T Consensus 78 --~~l~v~~a~~ 87 (104)
T 1p1t_A 78 --RALRVDNAAS 87 (104)
T ss_dssp --SCBEEEETTC
T ss_pred --cEEEEEeCCC
Confidence 5688888774
No 80
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=5.3e-15 Score=126.17 Aligned_cols=81 Identities=23% Similarity=0.299 Sum_probs=73.8
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++|| |.. |+|++++.+|.++|||||+|.+.++|.+|| .|||..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~- 81 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRS--------VRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG- 81 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEE--------EEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET-
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceE--------EEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC-
Confidence 3568999999999999999999999998 775 999999889999999999999999999999 89999996
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| ++|.|..+...
T Consensus 82 g--~~l~V~~a~~~ 93 (103)
T 2dng_A 82 D--RSLRVDIAEGR 93 (103)
T ss_dssp T--EECEEEECCCC
T ss_pred C--eEEEEEEecCC
Confidence 5 67899888743
No 81
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.58 E-value=4.5e-15 Score=131.13 Aligned_cols=83 Identities=29% Similarity=0.420 Sum_probs=76.1
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..+++|||+|||+++|+++|+++|++||.|.. |.|++++.+|.++|||||+|.+.++|..||..|||..|.
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 90 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKN--------IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM- 90 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC-
Confidence 45689999999999999999999999999997 999999889999999999999999999999999999996
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| +.|.|..+...
T Consensus 91 g--~~l~v~~a~~~ 102 (126)
T 3ex7_B 91 G--QPISVDWCFVR 102 (126)
T ss_dssp S--SBCEEEESEES
T ss_pred C--eEEEEEEecCC
Confidence 5 56888887643
No 82
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.58 E-value=5.2e-15 Score=127.62 Aligned_cols=85 Identities=34% Similarity=0.590 Sum_probs=70.3
Q ss_pred CcEEEEecccC-CcccCc----------ch---hhHHHHHHHHHHHh-hccCCeeEEEEecc---CCCcEEEEEeCCHHH
Q 009565 419 PATVILRFMFT-PAEMRA----------DE---NLRSELEADVQEEC-VKIGPVDSVKVCEN---HPQGVVLVRFKDRKD 480 (532)
Q Consensus 419 ~~~v~i~Nlf~-p~~~~~----------D~---~l~~ei~edLre~f-skfG~V~~V~l~~~---~~kG~aFV~F~s~ee 480 (532)
+++|+|+|||. |..... +. ....++.++|+++| ++||.|.+|.|+++ +++|+|||+|.+.++
T Consensus 1 s~~~~l~nm~~~p~~~~~~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~ 80 (104)
T 1jmt_A 1 SQTIALLNIYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREED 80 (104)
T ss_dssp CCEEEEEEEEECCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHH
T ss_pred CcEEEEeeccCCccccccccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHH
Confidence 36899999994 554322 11 22357789999999 99999999999876 579999999999999
Q ss_pred HHHHHHHHCCcEeCCeEEEEEee
Q 009565 481 AQKCIELMNGRWFGGRQIHASED 503 (532)
Q Consensus 481 A~kAi~~LnGr~f~GR~I~V~~~ 503 (532)
|.+|+..|||+.|+||+|+|.|+
T Consensus 81 A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 81 AEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHHHCCCEECCEEEEEEEc
Confidence 99999999999999999999875
No 83
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.5e-15 Score=126.28 Aligned_cols=81 Identities=20% Similarity=0.220 Sum_probs=73.7
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCC-CCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKET-GMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~t-G~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
...++|||+|||+++|+++|+++|+.|| |.. |+|++++.+ |.++|||||+|.+.++|.+|| .|||..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~--------v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 82 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISA--------VRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG 82 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEE--------EECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceE--------EEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC
Confidence 3458999999999999999999999999 886 999999877 999999999999999999999 99999996
Q ss_pred CCCCeeEEEeccccc
Q 009565 365 PDGKIPMSVTQAKFE 379 (532)
Q Consensus 365 ~G~~~~I~V~~A~~~ 379 (532)
| +.|.|..+...
T Consensus 83 -g--~~l~V~~a~~~ 94 (104)
T 1wi8_A 83 -N--KRIRVDVADQA 94 (104)
T ss_dssp -T--EECEEEECCCC
T ss_pred -C--cEEEEEEccCC
Confidence 5 67899888754
No 84
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=5.9e-15 Score=125.76 Aligned_cols=81 Identities=23% Similarity=0.352 Sum_probs=74.0
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|+++ +|.++|||||+|.+.++|.+||..|||..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 81 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITS--------AKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVA- 81 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEE--------EEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeC-
Confidence 35689999999999999999999999999996 999998 8999999999999999999999999999996
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| ++|.|..+...
T Consensus 82 g--~~l~V~~a~~~ 93 (103)
T 2d9p_A 82 T--KPLYVALAQRK 93 (103)
T ss_dssp S--SBCEEEECSSC
T ss_pred C--cEEEEEEeccc
Confidence 5 56888888744
No 85
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.58 E-value=4.2e-15 Score=132.92 Aligned_cols=82 Identities=24% Similarity=0.265 Sum_probs=75.7
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..+++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+||..|||..|.
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~- 114 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIAD--------VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD- 114 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEE--------EEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 45688999999999999999999999999996 999999889999999999999999999999999999996
Q ss_pred CCCeeEEEecccc
Q 009565 366 DGKIPMSVTQAKF 378 (532)
Q Consensus 366 G~~~~I~V~~A~~ 378 (532)
| ++|.|..+..
T Consensus 115 g--~~l~V~~a~~ 125 (129)
T 2kxn_B 115 G--RRIRVDFSIT 125 (129)
T ss_dssp S--SCCEESCCSS
T ss_pred C--EEEEEEEecC
Confidence 5 5688888764
No 86
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5e-15 Score=129.08 Aligned_cols=81 Identities=23% Similarity=0.299 Sum_probs=74.5
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+||..||+ .|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~- 84 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEE--------AVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID- 84 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEE--------EEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeE--------EEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC-
Confidence 45699999999999999999999999999997 99999988999999999999999999999999998 775
Q ss_pred CCCeeEEEecccc
Q 009565 366 DGKIPMSVTQAKF 378 (532)
Q Consensus 366 G~~~~I~V~~A~~ 378 (532)
| ++|.|..+..
T Consensus 85 g--~~l~V~~a~~ 95 (116)
T 2cqd_A 85 G--RKANVNLAYL 95 (116)
T ss_dssp T--EECEEEESTT
T ss_pred C--EEEEEEEccc
Confidence 5 6789988864
No 87
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=3.6e-15 Score=127.20 Aligned_cols=81 Identities=23% Similarity=0.275 Sum_probs=73.9
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhc-cCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCce-e
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSK-CGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTP-F 363 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk-~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~-l 363 (532)
...++|||+|||+++|+++|+++|++ ||.|.. |+|++++ +|.++|||||+|.+.++|.+||..|||.. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~--------v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 77 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRG--------GKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGL 77 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEE--------EEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEE--------EEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCccc
Confidence 45689999999999999999999999 999997 9999997 99999999999999999999999999999 8
Q ss_pred cCCCCeeEEEecccc
Q 009565 364 RPDGKIPMSVTQAKF 378 (532)
Q Consensus 364 ~~G~~~~I~V~~A~~ 378 (532)
. | ++|.|..+..
T Consensus 78 ~-g--~~l~v~~a~~ 89 (104)
T 2dhg_A 78 G-S--KPVRLSVAIP 89 (104)
T ss_dssp S-S--SCCCCCBCCC
T ss_pred C-C--EeEEEEEccC
Confidence 6 5 5688887763
No 88
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4e-15 Score=129.28 Aligned_cols=80 Identities=24% Similarity=0.407 Sum_probs=74.2
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+|| .|||..|. |
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~-g 93 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRD--------VRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL-G 93 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET-T
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeE--------EEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC-C
Confidence 4589999999999999999999999999997 999999888999999999999999999999 99999996 5
Q ss_pred CCeeEEEecccc
Q 009565 367 GKIPMSVTQAKF 378 (532)
Q Consensus 367 ~~~~I~V~~A~~ 378 (532)
+.|.|..+..
T Consensus 94 --~~l~V~~a~~ 103 (114)
T 2cq4_A 94 --VPIIVQASQA 103 (114)
T ss_dssp --EEEEEEEHHH
T ss_pred --eEEEEEecCC
Confidence 6799988763
No 89
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.57 E-value=1.4e-15 Score=129.41 Aligned_cols=80 Identities=20% Similarity=0.222 Sum_probs=70.6
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecC-CCCCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDK-ETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~-~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
...++|||+|||+++|+++|+++|++|| |.. |+|++++ .+|+++|||||+|.+.++|.+|| .|||..|.
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~--------v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~ 86 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISA--------VRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG 86 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEE--------EECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeE--------EEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC
Confidence 5679999999999999999999999999 886 9999997 58999999999999999999999 89999996
Q ss_pred CCCCeeEEEecccc
Q 009565 365 PDGKIPMSVTQAKF 378 (532)
Q Consensus 365 ~G~~~~I~V~~A~~ 378 (532)
| +.|.|..+..
T Consensus 87 -g--~~l~V~~a~~ 97 (100)
T 2j76_E 87 -N--RRIRVDVADQ 97 (100)
T ss_dssp -T--BCCCCEECCC
T ss_pred -C--eEEEEEeccC
Confidence 5 5577777763
No 90
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=7.4e-15 Score=124.00 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=71.9
Q ss_pred CCCcEEEEECCCCCCCHHHHH----HHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCc
Q 009565 286 KVNTHVYVTGLPDDVTVEEMV----EVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGT 361 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~----elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~ 361 (532)
..+++|||+|||+++|+++|+ ++|++||.|.. |+|++++.+ +|||||+|.+.++|.+||..|||.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~--------v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~ 75 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKS--------VELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRY 75 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEE--------EEECSCCST---TCCEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEE--------EEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCC
Confidence 456899999999999999999 99999999997 999998644 899999999999999999999999
Q ss_pred eecCCCCeeEEEecccc
Q 009565 362 PFRPDGKIPMSVTQAKF 378 (532)
Q Consensus 362 ~l~~G~~~~I~V~~A~~ 378 (532)
.|. | ++|+|..+..
T Consensus 76 ~~~-g--r~l~V~~a~~ 89 (96)
T 2dgx_A 76 KIG-S--KKILVSLATG 89 (96)
T ss_dssp EET-T--EEEEEEECCC
T ss_pred EEC-C--eEEEEEEcCC
Confidence 996 5 6799998864
No 91
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.57 E-value=9e-15 Score=134.18 Aligned_cols=83 Identities=28% Similarity=0.293 Sum_probs=76.4
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|++++.++.++|||||+|.+.++|.+||..|||..|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~- 107 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKK--------IIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD- 107 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 45689999999999999999999999999996 999999989999999999999999999999999999996
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| +.|.|..+...
T Consensus 108 g--~~l~V~~a~~~ 119 (156)
T 1h2v_Z 108 D--RIIRTDWDAGF 119 (156)
T ss_dssp T--EECEEEEESCC
T ss_pred C--eEEEEEECCCC
Confidence 5 67888888643
No 92
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.57 E-value=9.7e-15 Score=128.84 Aligned_cols=81 Identities=21% Similarity=0.368 Sum_probs=74.9
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..+++|||+|||+++|+++|+++|++||.|.. |+|++++ +|.++|||||+|.+.++|.+||..|||..|.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~- 102 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKK--------AAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLD- 102 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSE--------EEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 56799999999999999999999999999996 9999997 9999999999999999999999999999996
Q ss_pred CCCeeEEEecccc
Q 009565 366 DGKIPMSVTQAKF 378 (532)
Q Consensus 366 G~~~~I~V~~A~~ 378 (532)
| ++|.|..|..
T Consensus 103 g--~~l~V~~a~~ 113 (124)
T 2kt5_A 103 G--RPMDIQLVAS 113 (124)
T ss_dssp S--CEEEEEEECC
T ss_pred C--cEEEEEEeCC
Confidence 5 5688888763
No 93
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.56 E-value=1.3e-15 Score=126.54 Aligned_cols=78 Identities=33% Similarity=0.422 Sum_probs=71.3
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCCC
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~~ 368 (532)
++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.+ |..|+..|||..+. |
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~-g-- 69 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFN--------VKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM-G-- 69 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSE--------EEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS-S--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEE--------EEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC-C--
Confidence 68999999999999999999999999997 999999889999999999999999 99999999999997 5
Q ss_pred eeEEEecccc
Q 009565 369 IPMSVTQAKF 378 (532)
Q Consensus 369 ~~I~V~~A~~ 378 (532)
++|.|..|..
T Consensus 70 ~~l~V~~a~~ 79 (90)
T 2ki2_A 70 RTIRVTEANP 79 (90)
T ss_dssp SSCSEEEC--
T ss_pred eEEEEEEcCC
Confidence 5688887763
No 94
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.4e-15 Score=128.42 Aligned_cols=79 Identities=16% Similarity=0.263 Sum_probs=72.5
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCcc-ccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGII-KEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I-~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
...++|||+|||+++|+++|+++|+.||.| .. |+|++|+ +|+++|||||+|.+.++|.+||.. ||..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~--------v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~ 82 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENA--------VHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLN 82 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTT--------EEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEET
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCe--------EEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccC
Confidence 345889999999999999999999999999 76 9999997 999999999999999999999976 999996
Q ss_pred CCCCeeEEEeccc
Q 009565 365 PDGKIPMSVTQAK 377 (532)
Q Consensus 365 ~G~~~~I~V~~A~ 377 (532)
| +.|.|..+.
T Consensus 83 -g--r~i~v~~a~ 92 (114)
T 2cpy_A 83 -G--REAFVHVVT 92 (114)
T ss_dssp -T--EEEEEEEEC
T ss_pred -C--eEEEEEECC
Confidence 5 679998887
No 95
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.4e-14 Score=125.49 Aligned_cols=81 Identities=27% Similarity=0.421 Sum_probs=74.5
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..+++|||+|||+++|+++|+++|++||.|.. |+|++++ +|.++|||||+|.+.++|.+||..|||..|.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~--------~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 82 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVR--------ADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLF- 82 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeC-
Confidence 45689999999999999999999999999996 9999996 6999999999999999999999999999996
Q ss_pred CCCeeEEEecccc
Q 009565 366 DGKIPMSVTQAKF 378 (532)
Q Consensus 366 G~~~~I~V~~A~~ 378 (532)
| +.|.|..+..
T Consensus 83 g--~~l~v~~a~~ 93 (114)
T 2do0_A 83 D--RPMHVKMDER 93 (114)
T ss_dssp T--EECEEEECSC
T ss_pred C--CEEEEEEccc
Confidence 5 6788988764
No 96
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.56 E-value=2.4e-15 Score=134.41 Aligned_cols=83 Identities=17% Similarity=0.287 Sum_probs=73.2
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCc----
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGT---- 361 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~---- 361 (532)
..+++|||+|||+++|+++|+++|++||.|... .|+|++|+.+|+++|||||+|.+. +|.+||..|||.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~------~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~ 93 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSS------NVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPL 93 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTT------TEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccee------eEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCc
Confidence 345899999999999999999999999999520 189999988999999999999999 999999999999
Q ss_pred eecCCCCeeEEEecccc
Q 009565 362 PFRPDGKIPMSVTQAKF 378 (532)
Q Consensus 362 ~l~~G~~~~I~V~~A~~ 378 (532)
.|. | ++|.|..+..
T Consensus 94 ~~~-g--r~l~V~~a~~ 107 (131)
T 2m2b_A 94 TID-G--KTINVEFAKG 107 (131)
T ss_dssp CGG-G--CCCCCEECCC
T ss_pred cCC-C--EEEEEEECCC
Confidence 886 5 5678877764
No 97
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.56 E-value=7e-15 Score=122.43 Aligned_cols=80 Identities=20% Similarity=0.364 Sum_probs=72.4
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|+++ +|.++|||||+|.+.++|.+||..|||..|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~--------~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~- 74 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLY--------ADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLS- 74 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEE--------EEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBT-
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 45699999999999999999999999999996 999885 7999999999999999999999999999997
Q ss_pred CCCeeEEEecccc
Q 009565 366 DGKIPMSVTQAKF 378 (532)
Q Consensus 366 G~~~~I~V~~A~~ 378 (532)
| +.|.|..+..
T Consensus 75 g--~~l~v~~a~~ 85 (92)
T 2dgv_A 75 G--REIDVRIDRN 85 (92)
T ss_dssp T--BCCCCEECSC
T ss_pred C--cEEEEEEcCC
Confidence 5 5678877764
No 98
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.4e-14 Score=123.32 Aligned_cols=80 Identities=21% Similarity=0.273 Sum_probs=72.6
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|++++ +.++|||||+|.+.++|.+||..|||..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 81 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKS--------CKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKIL- 81 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEE--------EEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEET-
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeE--------EEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcC-
Confidence 45699999999999999999999999999997 9999984 447999999999999999999999999997
Q ss_pred CCCeeEEEecccc
Q 009565 366 DGKIPMSVTQAKF 378 (532)
Q Consensus 366 G~~~~I~V~~A~~ 378 (532)
| ++|.|.++..
T Consensus 82 g--~~l~V~~a~~ 92 (103)
T 2cqi_A 82 G--KEVKVNWATT 92 (103)
T ss_dssp T--EEEEEEECCC
T ss_pred C--CeEEEEECCC
Confidence 5 6799998874
No 99
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.56 E-value=6.2e-15 Score=126.67 Aligned_cols=80 Identities=20% Similarity=0.233 Sum_probs=71.3
Q ss_pred CCCcEEEEECCCCCC------CHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhC
Q 009565 286 KVNTHVYVTGLPDDV------TVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLD 359 (532)
Q Consensus 286 ~~~~~VyV~nLP~~v------TeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~Ln 359 (532)
...++|||+|||+++ |+++|+++|++||.|.. |.|++ .+|+++|||||+|.+.++|.+||..||
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~--------v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~ 82 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITN--------DFYPE--EDGKTKGYIFLEYASPAHAVDAVKNAD 82 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEE--------EECCC--BTTBSCCEEEEEECSSSHHHHHHHHCS
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEE--------EEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 346899999999999 78999999999999997 88883 589999999999999999999999999
Q ss_pred CceecCCCCeeEEEeccc
Q 009565 360 GTPFRPDGKIPMSVTQAK 377 (532)
Q Consensus 360 G~~l~~G~~~~I~V~~A~ 377 (532)
|..|. | +.+|.|..+.
T Consensus 83 g~~~~-g-~~~l~V~~a~ 98 (105)
T 2nlw_A 83 GYKLD-K-QHTFRVNLFT 98 (105)
T ss_dssp SEECS-T-TCEEEEECSC
T ss_pred CcccC-C-CceEEEEEcc
Confidence 99996 4 2268998876
No 100
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.56 E-value=9.2e-15 Score=130.86 Aligned_cols=80 Identities=25% Similarity=0.330 Sum_probs=73.7
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+||..|||..|.
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 131 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITD--------IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF- 131 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEE--------EEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 35689999999999999999999999999996 999999889999999999999999999999999999996
Q ss_pred CCCeeEEEecc
Q 009565 366 DGKIPMSVTQA 376 (532)
Q Consensus 366 G~~~~I~V~~A 376 (532)
| ++|+|..|
T Consensus 132 g--~~l~v~~A 140 (140)
T 2ku7_A 132 G--RTIRVNLA 140 (140)
T ss_dssp T--EEEEEEC-
T ss_pred C--EEEEEEeC
Confidence 5 67888764
No 101
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=5.1e-15 Score=126.61 Aligned_cols=82 Identities=18% Similarity=0.198 Sum_probs=75.2
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+||.. ||..|.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~- 83 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVD--------CVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD- 83 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEE--------EEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC-
Confidence 45699999999999999999999999999997 99999988999999999999999999999988 999996
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| +.|.|.++...
T Consensus 84 g--~~l~V~~a~~~ 95 (105)
T 2dh8_A 84 G--RNIDPKPCTPR 95 (105)
T ss_dssp T--EEEBCCCSCCS
T ss_pred C--EEEEEEEccCC
Confidence 5 67888888743
No 102
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.55 E-value=2.7e-15 Score=122.52 Aligned_cols=74 Identities=22% Similarity=0.247 Sum_probs=65.2
Q ss_pred CcEEEEECCCCCC------CHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCc
Q 009565 288 NTHVYVTGLPDDV------TVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGT 361 (532)
Q Consensus 288 ~~~VyV~nLP~~v------TeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~ 361 (532)
+++|||+|||+++ |+++|+++|++||.|.. |+|++ .+|+++|||||+|.+.++|.+||..|||.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~--------v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~ 70 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITN--------DFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGY 70 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEE--------EECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEE--------EEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCc
Confidence 3789999999999 77999999999999996 88873 58999999999999999999999999999
Q ss_pred eecCCCCeeEEE
Q 009565 362 PFRPDGKIPMSV 373 (532)
Q Consensus 362 ~l~~G~~~~I~V 373 (532)
.|. |+ .+|+|
T Consensus 71 ~~~-g~-~~l~V 80 (81)
T 2krb_A 71 KLD-KQ-HTFRV 80 (81)
T ss_dssp CCS-SS-SCCCC
T ss_pred ccC-Cc-eeEEe
Confidence 996 53 14544
No 103
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.55 E-value=8.6e-15 Score=126.79 Aligned_cols=81 Identities=20% Similarity=0.233 Sum_probs=71.5
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+||..+ |..|.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~- 92 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKE--------CLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELD- 92 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEE--------EEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCC-
Confidence 45689999999999999999999999999997 999999889999999999999999999999876 57785
Q ss_pred CCCeeEEEecccc
Q 009565 366 DGKIPMSVTQAKF 378 (532)
Q Consensus 366 G~~~~I~V~~A~~ 378 (532)
| +.|.|..+..
T Consensus 93 g--~~l~V~~a~~ 103 (109)
T 2rs2_A 93 S--KTIDPKVAFP 103 (109)
T ss_dssp T--EEEEEEECCC
T ss_pred C--EEEEEEEccC
Confidence 5 6788888764
No 104
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.55 E-value=9.3e-15 Score=128.71 Aligned_cols=80 Identities=31% Similarity=0.465 Sum_probs=74.0
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCC
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~ 367 (532)
.++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+|| .|||..|. |
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~-g- 104 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINR--------ITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFR-G- 104 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEE--------EEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEET-T-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeEC-C-
Confidence 488999999999999999999999999997 999999889999999999999999999999 89999996 5
Q ss_pred CeeEEEeccccc
Q 009565 368 KIPMSVTQAKFE 379 (532)
Q Consensus 368 ~~~I~V~~A~~~ 379 (532)
+.|.|..+...
T Consensus 105 -~~l~V~~a~~~ 115 (124)
T 2jwn_A 105 -RTIKVLPKRTN 115 (124)
T ss_dssp -EECEEEESSCC
T ss_pred -eEEEEEECCCC
Confidence 67899887743
No 105
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.55 E-value=1.1e-14 Score=127.89 Aligned_cols=79 Identities=24% Similarity=0.383 Sum_probs=72.0
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCc---cccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCce
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGI---IKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTP 362 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~---I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~ 362 (532)
...++|||+|||+++|+++|+++|+.||. |.. |+|++++. |+++|||||+|.+.++|.+||. |||..
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~--------v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~ 84 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAG--------VHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRES 84 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGG--------EEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCcee--------EEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCe
Confidence 35689999999999999999999999999 776 99999965 9999999999999999999998 99999
Q ss_pred ecCCCCeeEEEeccc
Q 009565 363 FRPDGKIPMSVTQAK 377 (532)
Q Consensus 363 l~~G~~~~I~V~~A~ 377 (532)
|. | +.|.|..+.
T Consensus 85 ~~-g--r~i~V~~a~ 96 (118)
T 2db1_A 85 MG-H--RYIEVFKSH 96 (118)
T ss_dssp ET-T--EEEEEEEEC
T ss_pred EC-C--eEEEEEECC
Confidence 96 4 678998876
No 106
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=126.86 Aligned_cols=81 Identities=15% Similarity=0.200 Sum_probs=74.5
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+||.. ||..|. |
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~-g 95 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTD--------CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSID-G 95 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSE--------EEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEET-T
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEEC-C
Confidence 3488999999999999999999999999996 99999988999999999999999999999987 999996 5
Q ss_pred CCeeEEEeccccc
Q 009565 367 GKIPMSVTQAKFE 379 (532)
Q Consensus 367 ~~~~I~V~~A~~~ 379 (532)
+.|.|.++...
T Consensus 96 --~~l~V~~a~~~ 106 (116)
T 1x4b_A 96 --RVVEPKRAVAR 106 (116)
T ss_dssp --EEEEEECCSSC
T ss_pred --EEEEEEECCCC
Confidence 67999988754
No 107
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3e-14 Score=121.30 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=72.9
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|++++ +.++|||||+|.+.++|.+||..|||..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 81 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILD--------VEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVE- 81 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEE--------EEEECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecC--CCCcEEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 45699999999999999999999999999996 9999984 348999999999999999999999999996
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| +.|.|.++...
T Consensus 82 g--~~l~v~~a~~~ 93 (103)
T 2cq3_A 82 G--RKIEVNNATAR 93 (103)
T ss_dssp T--EECEEEECCSS
T ss_pred C--EEEEEEEcccC
Confidence 5 67899888743
No 108
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.55 E-value=1.3e-14 Score=133.09 Aligned_cols=83 Identities=22% Similarity=0.295 Sum_probs=76.4
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|++|+.+|.++|||||+|.+.++|..||..|||..|.
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~--------~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 138 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGD--------VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD- 138 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEE--------EECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 35689999999999999999999999999996 999999889999999999999999999999999999996
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| ++|.|..+...
T Consensus 139 g--~~l~v~~a~~~ 150 (158)
T 2kn4_A 139 G--RELRVQMARYG 150 (158)
T ss_dssp S--SEEEEEEECCS
T ss_pred C--eEEEEEECCCC
Confidence 5 57899888743
No 109
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.1e-14 Score=119.56 Aligned_cols=79 Identities=22% Similarity=0.226 Sum_probs=72.2
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++| .|.. |+|+++ .+|+++|||||+|.+.++|.+||. |||..|.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~--------v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~- 75 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVA--------IRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMG- 75 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSE--------EEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEET-
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceE--------EEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeC-
Confidence 456899999999999999999999999 7876 999999 799999999999999999999999 9999996
Q ss_pred CCCeeEEEecccc
Q 009565 366 DGKIPMSVTQAKF 378 (532)
Q Consensus 366 G~~~~I~V~~A~~ 378 (532)
| +.|.|..+..
T Consensus 76 g--r~i~v~~a~~ 86 (91)
T 2dgw_A 76 G--RYIEVFREKS 86 (91)
T ss_dssp T--EEEEEEEESS
T ss_pred C--cEEEEEECCc
Confidence 5 6789988764
No 110
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=7.1e-15 Score=124.82 Aligned_cols=75 Identities=23% Similarity=0.217 Sum_probs=68.2
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCCC
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGK 368 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~~ 368 (532)
++|||+|||+++|+++|+++|++||.|.. |+|+++ ++|||||+|.+.++|.+|+..|||..|. |
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~-g-- 64 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRT--------VWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVIC-G-- 64 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSE--------EEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSS-S--
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeEC-C--
Confidence 58999999999999999999999999996 999876 7899999999999999999999999996 5
Q ss_pred eeEEEeccccc
Q 009565 369 IPMSVTQAKFE 379 (532)
Q Consensus 369 ~~I~V~~A~~~ 379 (532)
+.|.|..+...
T Consensus 65 ~~l~V~~a~~~ 75 (101)
T 2hvz_A 65 SRVRVELSTGM 75 (101)
T ss_dssp CCCEEEESSSC
T ss_pred cEEEEEEccCC
Confidence 45888888743
No 111
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.54 E-value=1.7e-14 Score=133.94 Aligned_cols=83 Identities=27% Similarity=0.400 Sum_probs=76.2
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..+++|||+|||+++|+++|+++|++||.|.. |.|++++.+|.++|||||+|.+.++|..||..|||..|.
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~- 140 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKN--------IHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM- 140 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEE--------EEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 45789999999999999999999999999997 999999889999999999999999999999999999996
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| ++|.|.++...
T Consensus 141 g--~~l~V~~a~~~ 152 (165)
T 1rk8_A 141 G--QTIQVDWCFVK 152 (165)
T ss_dssp T--EECEEEESEEC
T ss_pred C--EEEEEEEecCC
Confidence 5 67899888743
No 112
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.54 E-value=1.2e-14 Score=131.51 Aligned_cols=79 Identities=24% Similarity=0.355 Sum_probs=72.1
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCc---cccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCce
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGI---IKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTP 362 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~---I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~ 362 (532)
...++|||+|||+++|+++|+++|++||. |.. |+|++|+. |+++|||||+|.+.++|.+||. |||..
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~--------v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~ 111 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAG--------VHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRES 111 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTT--------EEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeE--------EEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCE
Confidence 45689999999999999999999999999 776 99999975 9999999999999999999998 99999
Q ss_pred ecCCCCeeEEEeccc
Q 009565 363 FRPDGKIPMSVTQAK 377 (532)
Q Consensus 363 l~~G~~~~I~V~~A~ 377 (532)
|. | +.|.|..+.
T Consensus 112 l~-g--r~i~V~~a~ 123 (136)
T 2hgl_A 112 MG-H--RYIEVFKSH 123 (136)
T ss_dssp SS-S--SEEEEEECC
T ss_pred EC-C--EEEEEEECC
Confidence 96 4 578998876
No 113
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=7.9e-15 Score=129.64 Aligned_cols=80 Identities=18% Similarity=0.272 Sum_probs=71.0
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|+.||.|.. +.++.+..+|+++|||||+|.+.++|.+||. |||..|.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~--------~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~- 92 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVED--------SIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG- 92 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTT--------TCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST-
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccc--------eEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC-
Confidence 45689999999999999999999999999986 5555555799999999999999999999998 9999996
Q ss_pred CCCeeEEEeccc
Q 009565 366 DGKIPMSVTQAK 377 (532)
Q Consensus 366 G~~~~I~V~~A~ 377 (532)
| +.|.|..+.
T Consensus 93 g--r~i~V~~a~ 102 (124)
T 1wel_A 93 N--RFIQVHPIT 102 (124)
T ss_dssp T--SCBEEEEEC
T ss_pred C--cEEEEEECC
Confidence 5 568888876
No 114
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.6e-14 Score=121.71 Aligned_cols=81 Identities=19% Similarity=0.221 Sum_probs=72.7
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+||. ++..|.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~- 81 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLM--------VQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMID- 81 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEE--------EEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEET-
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeC-
Confidence 34588999999999999999999999999997 9999998899999999999999999999997 577775
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| +.|.|..+...
T Consensus 82 g--~~l~v~~a~~~ 93 (103)
T 2cqg_A 82 G--RWCDCKLPNSK 93 (103)
T ss_dssp T--EEEEEECCCTT
T ss_pred C--eEEEEEecCCC
Confidence 5 67899888743
No 115
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.5e-14 Score=122.29 Aligned_cols=80 Identities=21% Similarity=0.300 Sum_probs=71.7
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|.. ++.++|||||+|.+.++|.+||+.|||..|.
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--------~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 87 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRD--------IDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYD- 87 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 45689999999999999999999999999996 88865 4678999999999999999999999999996
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| +.|.|..++..
T Consensus 88 g--~~l~V~~a~~~ 99 (109)
T 1x4a_A 88 G--YRLRVEFPRSG 99 (109)
T ss_dssp T--EECEEECCCCC
T ss_pred C--eEEEEEEcccC
Confidence 5 67999988754
No 116
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.1e-14 Score=124.56 Aligned_cols=81 Identities=15% Similarity=0.279 Sum_probs=73.1
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+|||+++|+++|+++|++||.|.. |+|++++ +|.++|||||+|.+.++|.+||..|||..|. |
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~-~ 93 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVIS--------TRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIK-T 93 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEE--------EEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCC-C
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEc-C
Confidence 4589999999999999999999999999997 9999997 9999999999999999999999999999994 2
Q ss_pred ------CCeeEEEeccc
Q 009565 367 ------GKIPMSVTQAK 377 (532)
Q Consensus 367 ------~~~~I~V~~A~ 377 (532)
..++|.|.++.
T Consensus 94 ~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 94 PPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp CTTSCCCSSCBEEEECC
T ss_pred CccccCCCCceeEEccC
Confidence 12568887776
No 117
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.9e-14 Score=124.52 Aligned_cols=79 Identities=20% Similarity=0.307 Sum_probs=72.1
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||.++|+++|+++|++||.|.. |+|++++ +.++|||||+|.+.++|.+|+..|||..|.
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~- 95 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILD--------VEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVE- 95 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSC--------EEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEE--------EEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 35689999999999999999999999999997 9999984 569999999999999999999999999996
Q ss_pred CCCeeEEEeccc
Q 009565 366 DGKIPMSVTQAK 377 (532)
Q Consensus 366 G~~~~I~V~~A~ 377 (532)
| ++|.|..+.
T Consensus 96 g--~~l~V~~a~ 105 (109)
T 2err_A 96 G--RKIEVNNAT 105 (109)
T ss_dssp T--EECEEEECC
T ss_pred C--EEEEEEECC
Confidence 5 678888876
No 118
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.54 E-value=6.2e-15 Score=132.78 Aligned_cols=83 Identities=22% Similarity=0.295 Sum_probs=76.2
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+||..|||..|.
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~- 115 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGD--------VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD- 115 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSE--------EECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 45689999999999999999999999999996 999999889999999999999999999999999999997
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| ++|.|..++..
T Consensus 116 g--~~l~V~~a~~~ 127 (135)
T 2lea_A 116 G--RELRVQMARYG 127 (135)
T ss_dssp S--SCCEEEECCCC
T ss_pred C--EEEEEEECCCC
Confidence 5 56888888744
No 119
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=9.6e-15 Score=125.59 Aligned_cols=82 Identities=22% Similarity=0.318 Sum_probs=73.3
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCc-cccCCCCCCCeEEEE-ecCCCCCccccEEEEecCHHHHHHHHHHhC--Cce
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGI-IKEDPETKKPRIKIY-VDKETGMKKGDALVTYLKEPSVALATQLLD--GTP 362 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~-I~~d~~~~~prikl~-~d~~tG~~kG~aFV~F~~~esA~~Al~~Ln--G~~ 362 (532)
.+++|||+|||+++|+++|+++|++||. |.. |.|+ .++.+|.++|||||+|.+.++|..||..|| +..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~--------v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~ 78 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLD--------VIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQ 78 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEE--------EECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceE--------EEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCce
Confidence 4689999999999999999999999998 886 8888 788889999999999999999999999996 578
Q ss_pred ecCCCCeeEEEeccccc
Q 009565 363 FRPDGKIPMSVTQAKFE 379 (532)
Q Consensus 363 l~~G~~~~I~V~~A~~~ 379 (532)
|. | +.|.|..+...
T Consensus 79 ~~-g--~~l~V~~a~~~ 92 (109)
T 2dis_A 79 LW-G--HQIAVDWAEPE 92 (109)
T ss_dssp BT-T--BCCEEEESCSS
T ss_pred ec-C--CeEEEEEcCCC
Confidence 86 5 56888888744
No 120
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.30 E-value=5.2e-16 Score=135.44 Aligned_cols=90 Identities=37% Similarity=0.631 Sum_probs=81.4
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|..++..+.|.|+|++++.+|.++|||||+|.+.++|.+||..|||..|.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~- 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS- 83 (116)
Confidence 3458899999999999999999999999999766777888999999889999999999999999999999999999997
Q ss_pred CCCeeEEEecccc
Q 009565 366 DGKIPMSVTQAKF 378 (532)
Q Consensus 366 G~~~~I~V~~A~~ 378 (532)
| ++|.|.++..
T Consensus 84 g--~~l~V~~a~~ 94 (116)
T 2lcw_A 84 G--NPIKVSFATR 94 (116)
Confidence 5 5688888764
No 121
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.1e-14 Score=126.39 Aligned_cols=83 Identities=20% Similarity=0.285 Sum_probs=74.1
Q ss_pred CCCcEEEEECCCCCCCHHHHH---HHHhccCccccCCCCCCCeEEEEecCCCC---CccccEEEEecCHHHHHHHHHHhC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMV---EVFSKCGIIKEDPETKKPRIKIYVDKETG---MKKGDALVTYLKEPSVALATQLLD 359 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~---elFsk~G~I~~d~~~~~prikl~~d~~tG---~~kG~aFV~F~~~esA~~Al~~Ln 359 (532)
...++|||+|||+++|+++|+ ++|++||.|.. |+|++++.++ .++|||||+|.+.++|.+||..||
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~--------v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ln 84 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHK--------VVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVN 84 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEE--------EEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEE--------EEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhC
Confidence 356889999999999999999 99999999997 9999887644 566999999999999999999999
Q ss_pred CceecCCCCeeEEEeccccc
Q 009565 360 GTPFRPDGKIPMSVTQAKFE 379 (532)
Q Consensus 360 G~~l~~G~~~~I~V~~A~~~ 379 (532)
|..|. | ++|.|..+...
T Consensus 85 g~~~~-g--r~l~V~~a~~k 101 (111)
T 2cpi_A 85 NVVVD-G--RTLKASLGTTK 101 (111)
T ss_dssp TEEET-T--EEEEEESCCCC
T ss_pred CCEEC-C--EEEEEEecccc
Confidence 99996 5 67999998754
No 122
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1e-14 Score=125.12 Aligned_cols=78 Identities=18% Similarity=0.240 Sum_probs=69.4
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.+ . |+|++++ +|+++|||||+|.+.++|.+|| .+|+..|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~--------v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~- 80 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-R--------VHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQ- 80 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-E--------EEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-E--------EEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeEC-
Confidence 456899999999999999999999999965 5 9999996 8999999999999999999999 57999996
Q ss_pred CCCeeEEEeccc
Q 009565 366 DGKIPMSVTQAK 377 (532)
Q Consensus 366 G~~~~I~V~~A~ 377 (532)
| +.|.|..+.
T Consensus 81 g--r~i~V~~~~ 90 (102)
T 1wez_A 81 H--RYVELFLNS 90 (102)
T ss_dssp S--SCCEEEEEC
T ss_pred C--cEEEEEECC
Confidence 4 457877665
No 123
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.53 E-value=3.9e-15 Score=119.26 Aligned_cols=75 Identities=21% Similarity=0.332 Sum_probs=67.2
Q ss_pred EEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCCCe
Q 009565 290 HVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKI 369 (532)
Q Consensus 290 ~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~~~ 369 (532)
+|||+|||+++|+++|+++|++||.|.. |.|++++.+|.++|||||+|.+.++|.+||. +++..+. | +
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~-g--~ 68 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVES--------IELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVG-L--S 68 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSE--------ECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBT-T--B
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeEC-C--E
Confidence 5999999999999999999999999996 9999998899999999999999999999997 5888886 5 4
Q ss_pred eEEEecc
Q 009565 370 PMSVTQA 376 (532)
Q Consensus 370 ~I~V~~A 376 (532)
.|.|..|
T Consensus 69 ~l~v~~a 75 (75)
T 1iqt_A 69 KCEIKVA 75 (75)
T ss_dssp CCCEEEC
T ss_pred EEEEEEC
Confidence 5666543
No 124
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.53 E-value=2.1e-14 Score=123.12 Aligned_cols=77 Identities=22% Similarity=0.258 Sum_probs=68.1
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCce--e
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTP--F 363 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~--l 363 (532)
.++++|||+|||+++|+++|+++|++||.|.. |+|++ .||||||+|.+.++|..|+..|||.. |
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~--------v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i 84 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISY--------VVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYI 84 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEE--------EEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCcee
Confidence 45689999999999999999999999999996 88875 37999999999999999999999986 5
Q ss_pred cCCCCeeEEEeccccc
Q 009565 364 RPDGKIPMSVTQAKFE 379 (532)
Q Consensus 364 ~~G~~~~I~V~~A~~~ 379 (532)
. | ++|.|++++.+
T Consensus 85 ~-G--r~i~V~~S~~k 97 (100)
T 3r27_A 85 A-G--HPAFVNYSTSQ 97 (100)
T ss_dssp T-T--EEEEEEECSCS
T ss_pred C-C--cEEEEEecccc
Confidence 4 4 78999998743
No 125
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.53 E-value=9.9e-15 Score=143.10 Aligned_cols=81 Identities=27% Similarity=0.249 Sum_probs=74.1
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccC--ccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCG--IIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G--~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
..++|||+|||+++|+++|+++|++|| .|.. |+|++|+.+|++||||||+|.+.++|.+||..|||..|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~--------v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~ 138 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILE--------IKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH 138 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEE--------EEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC
Confidence 568999999999999999999999999 8986 999999999999999999999999999999999999997
Q ss_pred CCCCeeEEEecccc
Q 009565 365 PDGKIPMSVTQAKF 378 (532)
Q Consensus 365 ~G~~~~I~V~~A~~ 378 (532)
| +.|.|..+..
T Consensus 139 -G--r~l~V~~a~~ 149 (229)
T 3q2s_C 139 -G--QNPVVTPVNK 149 (229)
T ss_dssp -T--BCCEEEECCH
T ss_pred -C--EEeEEEECCC
Confidence 5 5688888864
No 126
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.53 E-value=2e-14 Score=120.04 Aligned_cols=73 Identities=12% Similarity=0.221 Sum_probs=67.2
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCC
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~ 367 (532)
...|||+||++.+|+++|+++|.+||+|.+ ++|+. +||||||+|.+.++|.+|++.|||..+. |
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~--------~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~-g- 70 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVS--------FHPYL------NQGIALCKYTTREEANKAQMALNNCVLA-N- 70 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEE--------EEEET------TTTEEEEEESSHHHHHHHHHHHTTEEET-T-
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEE--------EEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEEC-C-
Confidence 377999999999999999999999999997 88864 6999999999999999999999999996 4
Q ss_pred CeeEEEeccc
Q 009565 368 KIPMSVTQAK 377 (532)
Q Consensus 368 ~~~I~V~~A~ 377 (532)
++|+|..|.
T Consensus 71 -r~I~V~~A~ 79 (89)
T 2wbr_A 71 -TTIFAESPS 79 (89)
T ss_dssp -EEEEEECCC
T ss_pred -cEEEEEECC
Confidence 789999884
No 127
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.52 E-value=1.2e-14 Score=125.16 Aligned_cols=79 Identities=24% Similarity=0.374 Sum_probs=71.2
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCc---cccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCce
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGI---IKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTP 362 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~---I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~ 362 (532)
...++|||+|||+++|+++|+++|+.||. |.. |+|++++. |+++|||||+|.+.++|.+||. |||..
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~--------v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~ 78 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENG--------IHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMY 78 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTT--------EECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcce--------EEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcce
Confidence 45689999999999999999999999998 776 99999975 9999999999999999999998 99999
Q ss_pred ecCCCCeeEEEeccc
Q 009565 363 FRPDGKIPMSVTQAK 377 (532)
Q Consensus 363 l~~G~~~~I~V~~A~ 377 (532)
|. | +.|.|..+.
T Consensus 79 ~~-g--r~i~V~~a~ 90 (107)
T 2lmi_A 79 MG-Q--RYVEVYEIN 90 (107)
T ss_dssp SS-S--SCCCCEECC
T ss_pred eC-C--eEEEEEECC
Confidence 85 4 457887776
No 128
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.52 E-value=5.2e-14 Score=122.26 Aligned_cols=80 Identities=28% Similarity=0.374 Sum_probs=71.5
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..+++|||+|||+++|+++|+++|++||.|.. |.|+++ +.++|||||+|.+.++|..|+..|||..|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 73 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQ--------IRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVS- 73 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 35689999999999999999999999999997 999875 566999999999999999999999999996
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| +.|.|..+...
T Consensus 74 g--~~l~v~~a~~~ 85 (115)
T 3lqv_A 74 N--RYLVVLYYNAN 85 (115)
T ss_dssp S--CBCEEEECCHH
T ss_pred C--eEEEEEEecCC
Confidence 5 56888888743
No 129
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.8e-14 Score=124.65 Aligned_cols=77 Identities=16% Similarity=0.228 Sum_probs=68.1
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCC--cee
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDG--TPF 363 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG--~~l 363 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|+++ ||||||+|.+.++|..||..|++ ..|
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~--------v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l 79 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--------LLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL 79 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEE--------EEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 34589999999999999999999999999997 999865 79999999999999999998864 678
Q ss_pred cCCCCeeEEEeccccc
Q 009565 364 RPDGKIPMSVTQAKFE 379 (532)
Q Consensus 364 ~~G~~~~I~V~~A~~~ 379 (532)
. | ++|.|.+++..
T Consensus 80 ~-G--r~l~V~~A~~~ 92 (105)
T 1sjq_A 80 R-G--QPIYIQFSNHK 92 (105)
T ss_dssp T-T--EECCBCCCSSS
T ss_pred C-C--EEEEEEEcCCC
Confidence 6 5 77999988754
No 130
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.4e-14 Score=123.67 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=69.5
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+|||+++|+++|+++|+.| .|.. |+|++|+ +|+++|||||+|.+.++|.+|| .|||..|. |
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~--------v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~-g 82 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDA--------VHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMI-Q 82 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCE--------EEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEET-T
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeE--------EEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeEC-C
Confidence 45899999999999999999999999 6775 9999996 5999999999999999999999 69999995 4
Q ss_pred CCeeEEEeccc
Q 009565 367 GKIPMSVTQAK 377 (532)
Q Consensus 367 ~~~~I~V~~A~ 377 (532)
+.|.|..+.
T Consensus 83 --r~i~V~~a~ 91 (109)
T 2dnn_A 83 --RYVEVSPAT 91 (109)
T ss_dssp --EEEEEEECC
T ss_pred --eEEEEEECC
Confidence 678998775
No 131
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.7e-14 Score=122.40 Aligned_cols=80 Identities=21% Similarity=0.303 Sum_probs=70.8
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. .|+|+++ .+|+++|||||+|.+.++|.+||.. ||..|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~-------~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~- 82 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPN-------GMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIG- 82 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEE-------EEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcce-------eEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhC-
Confidence 45689999999999999999999999999974 3888888 7999999999999999999999986 999985
Q ss_pred CCCeeEEEeccc
Q 009565 366 DGKIPMSVTQAK 377 (532)
Q Consensus 366 G~~~~I~V~~A~ 377 (532)
| +.|.|..+.
T Consensus 83 g--r~i~v~~~~ 92 (104)
T 1wg5_A 83 H--RYIEIFKSS 92 (104)
T ss_dssp S--SCCEEEEEC
T ss_pred C--cEEEEEECC
Confidence 4 458887765
No 132
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2e-14 Score=124.79 Aligned_cols=83 Identities=22% Similarity=0.289 Sum_probs=69.8
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..+++|||+|||+++|+++|+++|++||.|.. +.+..+..+|.++|||||+|.+.++|.+||..|||..|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~--------~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~- 93 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKG--------PPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLY- 93 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSS--------SCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccc--------eEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeC-
Confidence 34689999999999999999999999999954 322222237899999999999999999999999999996
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| ++|.|.++...
T Consensus 94 g--~~l~v~~a~~~ 105 (115)
T 2cpx_A 94 G--KILVIEFGKNK 105 (115)
T ss_dssp S--CBCEEEECCCC
T ss_pred C--cEEEEEEccCC
Confidence 5 56888888743
No 133
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.50 E-value=6.8e-14 Score=124.61 Aligned_cols=81 Identities=15% Similarity=0.152 Sum_probs=70.2
Q ss_pred cEEEEECC----CCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecC----HHH----HHHHHH
Q 009565 289 THVYVTGL----PDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLK----EPS----VALATQ 356 (532)
Q Consensus 289 ~~VyV~nL----P~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~----~es----A~~Al~ 356 (532)
+.|||+|| |+.+++.+|+++|+.||.|.+ |.++.|+.||.++|||||.|.+ ++. |.+|+.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~--------~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~ 74 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISH--------FEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVR 74 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSE--------EEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence 78999999 999999999999999999997 9999999999999999999996 333 888988
Q ss_pred --HhCCceecCCCCeeEEEecccccc
Q 009565 357 --LLDGTPFRPDGKIPMSVTQAKFEQ 380 (532)
Q Consensus 357 --~LnG~~l~~G~~~~I~V~~A~~~~ 380 (532)
.|||..|. | ++|+|.......
T Consensus 75 ~~~lng~~I~-G--r~irV~ln~~g~ 97 (136)
T 2j8a_A 75 KHESSGCFIM-G--FKFEVILNKHSI 97 (136)
T ss_dssp HTTTTCEEET-T--EEEEEEECCTTH
T ss_pred HhhhcCCeec-C--cEEEEEECcccH
Confidence 78999996 5 667887665433
No 134
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=4.3e-14 Score=126.36 Aligned_cols=79 Identities=20% Similarity=0.322 Sum_probs=69.5
Q ss_pred CCCcEEEEECCCCCCCHHHHH----HHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCc
Q 009565 286 KVNTHVYVTGLPDDVTVEEMV----EVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGT 361 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~----elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~ 361 (532)
..+++|||+|||+.+++++|+ ++|++||.|.. |.+. .+|+++|||||+|.+.++|..||..|||.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~--------v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~ 95 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILD--------IVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGY 95 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEE--------EEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEE--------EEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCC
Confidence 456899999999999999876 69999999986 7764 36899999999999999999999999999
Q ss_pred eecCCCCeeEEEecccc
Q 009565 362 PFRPDGKIPMSVTQAKF 378 (532)
Q Consensus 362 ~l~~G~~~~I~V~~A~~ 378 (532)
.|. | ++|.|.++..
T Consensus 96 ~l~-g--r~l~V~~a~~ 109 (127)
T 2a3j_A 96 PFQ-G--NPLVITFSET 109 (127)
T ss_dssp CCT-T--SCCEEEECCC
T ss_pred EeC-C--CEEEEEEccC
Confidence 997 5 5688888874
No 135
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=9.9e-15 Score=123.90 Aligned_cols=80 Identities=16% Similarity=0.173 Sum_probs=69.9
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. .+++++.+|.++|||||+|.+.++|.+||+ |||..|.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~---------~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~- 83 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND---------LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF- 83 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT---------CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce---------EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC-
Confidence 35689999999999999999999999999984 344555689999999999999999999998 9999997
Q ss_pred CCCeeEEEecccc
Q 009565 366 DGKIPMSVTQAKF 378 (532)
Q Consensus 366 G~~~~I~V~~A~~ 378 (532)
| +.|.|..+..
T Consensus 84 g--~~l~V~~a~~ 94 (101)
T 1fj7_A 84 G--NEIKLEKPKG 94 (101)
T ss_dssp T--BCCEEECCSC
T ss_pred C--cEEEEEEcCC
Confidence 5 5688888864
No 136
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=5.4e-14 Score=124.33 Aligned_cols=77 Identities=16% Similarity=0.228 Sum_probs=67.8
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCC--cee
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDG--TPF 363 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG--~~l 363 (532)
..+++|||+|||+++|+++|+++|++||.|.. |+|+++ ||||||+|.+.++|..|+..|++ ..|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~--------v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l 94 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--------LLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL 94 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCE--------EEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 45689999999999999999999999999997 999875 79999999999999999999885 567
Q ss_pred cCCCCeeEEEeccccc
Q 009565 364 RPDGKIPMSVTQAKFE 379 (532)
Q Consensus 364 ~~G~~~~I~V~~A~~~ 379 (532)
. | ++|.|.+++..
T Consensus 95 ~-G--r~l~V~~a~~k 107 (119)
T 2ad9_A 95 R-G--QPIYIQFSNHK 107 (119)
T ss_dssp T-T--BCCEEEECSSS
T ss_pred C-C--eEEEEEEccCC
Confidence 5 5 67899888744
No 137
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.50 E-value=6.2e-14 Score=119.50 Aligned_cols=77 Identities=25% Similarity=0.450 Sum_probs=67.6
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
..++|||+|| |..++ .++|+++|++||.|.+|.|+++ .++|||||+|.+.++|.+||..|||..|
T Consensus 18 ~gt~lfV~nL--p~~~t---------e~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~ 86 (99)
T 4fxv_A 18 QGTNLIVNYL--PQNMT---------QDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL 86 (99)
T ss_dssp CCSEEEEESC--CTTCC---------HHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE
Confidence 3468999999 66553 3489999999999999999864 5689999999999999999999999999
Q ss_pred CCeEEEEEeecC
Q 009565 494 GGRQIHASEDDG 505 (532)
Q Consensus 494 ~GR~I~V~~~dg 505 (532)
+||+|+|.++.+
T Consensus 87 ~gr~l~V~~AkP 98 (99)
T 4fxv_A 87 QSKTIKVSYARP 98 (99)
T ss_dssp TTEECEEEECCB
T ss_pred CCEEEEEEEeeC
Confidence 999999998753
No 138
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=8.1e-14 Score=117.59 Aligned_cols=77 Identities=19% Similarity=0.336 Sum_probs=67.5
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|. +.++.+ .++|||||+|.+.++|..||..|||..|.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~---------~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 82 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP---------LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLG- 82 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC---------SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSS-
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE---------EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 4568999999999999999999999999996 455543 68999999999999999999999999997
Q ss_pred CCCeeEEEecccc
Q 009565 366 DGKIPMSVTQAKF 378 (532)
Q Consensus 366 G~~~~I~V~~A~~ 378 (532)
| ++|.|..+..
T Consensus 83 g--~~l~V~~a~~ 93 (97)
T 2e5j_A 83 T--DTLRVALARQ 93 (97)
T ss_dssp S--SCCEEEECCC
T ss_pred C--cEEEEEEcCC
Confidence 5 5688888764
No 139
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=1.1e-13 Score=119.28 Aligned_cols=77 Identities=22% Similarity=0.402 Sum_probs=69.0
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|+++ |||||+|.+.++|.+||+.|||..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~- 76 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCY--------ADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFR- 76 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEE--------EEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEE-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeE--------EEEecC-------CEEEEEECCHHHHHHHHHHHCcCCcc-
Confidence 45689999999999999999999999999996 999875 89999999999999999999999996
Q ss_pred CCC---eeEEEecccc
Q 009565 366 DGK---IPMSVTQAKF 378 (532)
Q Consensus 366 G~~---~~I~V~~A~~ 378 (532)
|.. +.|.|..+..
T Consensus 77 g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 77 SHEGETAYIRVKVDGP 92 (108)
T ss_dssp CTTSCEEEEEEEESSC
T ss_pred CCcCcceEEEEEeCCC
Confidence 422 5689988874
No 140
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.49 E-value=5.5e-14 Score=122.78 Aligned_cols=76 Identities=12% Similarity=0.184 Sum_probs=67.8
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccC-ccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCG-IIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G-~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..++|||+|||+++|+++|+++|++|| .|.. +.|+. +.++|||||+|.+.++|.+||..|||..|.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~--------v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~- 93 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTF--------SSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFR- 93 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSE--------EECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEET-
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEE--------EEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 458999999999999999999999999 7885 77753 358999999999999999999999999997
Q ss_pred CCCeeEEEeccc
Q 009565 366 DGKIPMSVTQAK 377 (532)
Q Consensus 366 G~~~~I~V~~A~ 377 (532)
| +.|.|..+.
T Consensus 94 G--r~i~V~~a~ 103 (111)
T 2jvr_A 94 G--SVITVERDD 103 (111)
T ss_dssp T--EEEEEEESC
T ss_pred C--eEEEEEECC
Confidence 5 679998876
No 141
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=8.7e-14 Score=118.12 Aligned_cols=80 Identities=25% Similarity=0.373 Sum_probs=71.4
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|+.|+ . |++++++.+|.++|||||+|.+.++|.+||..|||..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~--------~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 80 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---R--------ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID- 80 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---E--------EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---E--------EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC-
Confidence 4568899999999999999999999773 3 778888889999999999999999999999999999997
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| +.|.|..++..
T Consensus 81 g--~~l~V~~a~~~ 92 (102)
T 2fc8_A 81 G--NKVTLDWAKPK 92 (102)
T ss_dssp T--EECEEEECCCC
T ss_pred C--eEEEEEEecCC
Confidence 5 67899888754
No 142
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.49 E-value=3.9e-14 Score=151.51 Aligned_cols=79 Identities=15% Similarity=0.381 Sum_probs=69.1
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
..++|||.|| +..++ .++|+.+|++||.|..|.|+.+ .++|||||+|.+.++|.+||..|||..|
T Consensus 101 ~~~~lfV~nL--~~~~t---------e~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i 169 (437)
T 3pgw_S 101 AFKTLFVARV--NYDTT---------ESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI 169 (437)
T ss_pred CCCEEEEeCC--CCCCC---------HHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEE
Confidence 3469999999 55442 3589999999999999999754 5789999999999999999999999999
Q ss_pred CCeEEEEEeecCCc
Q 009565 494 GGRQIHASEDDGLV 507 (532)
Q Consensus 494 ~GR~I~V~~~dg~~ 507 (532)
+|+.|.|.++.+++
T Consensus 170 ~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 170 DGRRVLVDVERGRT 183 (437)
T ss_pred CCEEEEEEEeCCCC
Confidence 99999999998754
No 143
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1e-13 Score=118.90 Aligned_cols=77 Identities=16% Similarity=0.256 Sum_probs=67.2
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhC--Ccee
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLD--GTPF 363 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~Ln--G~~l 363 (532)
..+++|||+|||+++|+++|+++|++||.|.. |.|+++ ||||||+|.+.++|..|+..|+ +..|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~--------v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~ 78 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTN--------ILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHL 78 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEE--------EEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 34589999999999999999999999999996 888754 7999999999999999999774 6678
Q ss_pred cCCCCeeEEEeccccc
Q 009565 364 RPDGKIPMSVTQAKFE 379 (532)
Q Consensus 364 ~~G~~~~I~V~~A~~~ 379 (532)
. | ++|.|.++...
T Consensus 79 ~-G--r~l~V~~a~~~ 91 (101)
T 2cq1_A 79 R-N--QPIYIQYSNHK 91 (101)
T ss_dssp T-T--EECEEEECSCS
T ss_pred C-C--cEEEEEEcCcc
Confidence 6 5 77999988743
No 144
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.49 E-value=4.2e-14 Score=118.83 Aligned_cols=79 Identities=28% Similarity=0.480 Sum_probs=71.2
Q ss_pred CCCcEEEEECCCCCCCHHHHH----HHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCc
Q 009565 286 KVNTHVYVTGLPDDVTVEEMV----EVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGT 361 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~----elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~ 361 (532)
..+++|||+|||+++|+++|+ ++|++||.|.. |+|.+ +|.++|||||+|.+.++|..|+..|||.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~--------v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~ 74 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILD--------ILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGF 74 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEE--------EECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEE--------EEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCC
Confidence 456899999999999999999 99999999996 88763 5889999999999999999999999999
Q ss_pred eecCCCCeeEEEecccc
Q 009565 362 PFRPDGKIPMSVTQAKF 378 (532)
Q Consensus 362 ~l~~G~~~~I~V~~A~~ 378 (532)
.|. | ++|.|.++..
T Consensus 75 ~~~-g--~~l~v~~a~~ 88 (97)
T 1nu4_A 75 PFY-D--KPMRIQYAKT 88 (97)
T ss_dssp EET-T--EECEEEECSS
T ss_pred EEC-C--cEEEEEEccC
Confidence 996 5 6799988874
No 145
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=1.2e-13 Score=116.37 Aligned_cols=79 Identities=20% Similarity=0.280 Sum_probs=68.6
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |.|.++ +|||||+|.+.++|.+||..|||..|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~- 79 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRT--------IDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLG- 79 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEE--------EEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeC-
Confidence 45589999999999999999999999999996 887643 789999999999999999999999996
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
+..++|.|..+...
T Consensus 80 ~~g~~l~V~~a~~~ 93 (97)
T 1why_A 80 GPDRRLRVDFAKSG 93 (97)
T ss_dssp SSSCBCEEEECCCC
T ss_pred CCCcEEEEEECCCC
Confidence 21267899888743
No 146
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1e-13 Score=113.57 Aligned_cols=75 Identities=20% Similarity=0.310 Sum_probs=66.9
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHh-CCceec
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLL-DGTPFR 364 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~L-nG~~l~ 364 (532)
..+++|||+|||+++|+++|+++|++||.|.. |+|+++ +|||||+|.+.++|..|+..| ||..+.
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~--------~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~ 75 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRT--------ITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVN 75 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEE--------EEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEET
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeE--------EEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeEC
Confidence 45689999999999999999999999999996 888864 799999999999999999988 999996
Q ss_pred CCCCeeEEEeccc
Q 009565 365 PDGKIPMSVTQAK 377 (532)
Q Consensus 365 ~G~~~~I~V~~A~ 377 (532)
| ++|.|.+++
T Consensus 76 -g--~~l~v~~ak 85 (85)
T 2ytc_A 76 -G--RRLNVKWGR 85 (85)
T ss_dssp -T--EECCEEECC
T ss_pred -C--CEEEEEecC
Confidence 5 668887763
No 147
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=8.2e-14 Score=118.19 Aligned_cols=79 Identities=18% Similarity=0.213 Sum_probs=69.8
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|. |+++ .+|+++|||||+|.+.++|.+||..|||..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~-----------~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 79 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIK-----------VPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIE- 79 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEE-----------CCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE-----------EEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC-
Confidence 3569999999999999999999999999763 5555 58999999999999999999999999999997
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| +.|.|..+...
T Consensus 80 g--~~l~v~~a~~~ 91 (101)
T 2fc9_A 80 G--RAIRLELQGPR 91 (101)
T ss_dssp T--EEEEEEECSSC
T ss_pred C--eEEEEEEcCCC
Confidence 5 67999888754
No 148
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.48 E-value=3.5e-14 Score=120.73 Aligned_cols=78 Identities=24% Similarity=0.434 Sum_probs=70.7
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+|||+++|+++|+++|++||.|.. |+|++++ +|.++|||||+|.+.++|.+||. +|..|. |
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~-g 75 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKE--------VKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFH-G 75 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEET-T
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEE--------EEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeEC-C
Confidence 4589999999999999999999999999996 9999997 99999999999999999999997 888886 5
Q ss_pred CCeeEEEecccc
Q 009565 367 GKIPMSVTQAKF 378 (532)
Q Consensus 367 ~~~~I~V~~A~~ 378 (532)
+.|.|.++..
T Consensus 76 --~~l~v~~a~~ 85 (102)
T 2xs2_A 76 --KKLKLGPAIR 85 (102)
T ss_dssp --EECEEEEEEE
T ss_pred --EEEEEEECCc
Confidence 5678777753
No 149
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=3.3e-14 Score=122.35 Aligned_cols=75 Identities=13% Similarity=0.179 Sum_probs=66.5
Q ss_pred CCcEEEEECCCC-CCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCce--e
Q 009565 287 VNTHVYVTGLPD-DVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTP--F 363 (532)
Q Consensus 287 ~~~~VyV~nLP~-~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~--l 363 (532)
.+++|||+|||+ ++|+++|+++|++||.|.. |.|+++ +|||||+|.+.++|..||..||+.. |
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~--------v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~ 79 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISN--------HLILNK------INEAFIEMATTEDAQAAVDYYTTTPALV 79 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEE--------EEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEE--------EEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceE
Confidence 458999999999 9999999999999999997 988865 5899999999999999999998754 7
Q ss_pred cCCCCeeEEEecccc
Q 009565 364 RPDGKIPMSVTQAKF 378 (532)
Q Consensus 364 ~~G~~~~I~V~~A~~ 378 (532)
. | ++|.|.+++.
T Consensus 80 ~-G--r~l~V~~a~~ 91 (102)
T 1x4d_A 80 F-G--KPVRVHLSQK 91 (102)
T ss_dssp T-T--EECEEEEECC
T ss_pred C-C--cEEEEEECCC
Confidence 5 5 6799988873
No 150
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.48 E-value=9.4e-14 Score=117.83 Aligned_cols=74 Identities=23% Similarity=0.399 Sum_probs=67.1
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
.+++|||+|||.++|+++|+++|++||.|.. |+|. +++|||||+|.+.++|.+|+..|||..|. |
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~--------~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g 90 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILD--------FKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQ-G 90 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSE--------EEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEET-T
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEE--------EEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeEC-C
Confidence 4589999999999999999999999999996 8887 35899999999999999999999999996 5
Q ss_pred CCeeEEEeccc
Q 009565 367 GKIPMSVTQAK 377 (532)
Q Consensus 367 ~~~~I~V~~A~ 377 (532)
+.|+|..++
T Consensus 91 --~~l~V~~a~ 99 (101)
T 2la4_A 91 --RNLRTGWGK 99 (101)
T ss_dssp --EECCCCBCC
T ss_pred --eEEEEEecc
Confidence 668888775
No 151
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.5e-13 Score=114.30 Aligned_cols=75 Identities=19% Similarity=0.284 Sum_probs=67.6
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|+ +|||||+|.+.++|.+||..|||..|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~- 68 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLE--------CDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLH- 68 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEE--------EEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCS-
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEE--------CCEEEEEECCHHHHHHHHHHhcCCccC-
Confidence 45699999999999999999999999999996 8886 689999999999999999999999997
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| ++|.|.++...
T Consensus 69 g--~~l~v~~a~~~ 80 (90)
T 2dnq_A 69 G--VNINVEASKNK 80 (90)
T ss_dssp S--CBCEEECSSCC
T ss_pred C--cEEEEEECCCC
Confidence 5 56899888744
No 152
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.47 E-value=1.7e-13 Score=116.09 Aligned_cols=74 Identities=19% Similarity=0.279 Sum_probs=66.7
Q ss_pred CCCcEEEEECCCC-CCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 286 KVNTHVYVTGLPD-DVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 286 ~~~~~VyV~nLP~-~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
..+++|||+|||+ ++|+++|+++|++||.|.. |+| ++|||||+|.+.++|.+||..|||..+.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~--------v~i--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQ--------INI--------KNAFGFIQFDNPQSVRDAIEXESQEMNF 83 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEE--------EEE--------CSSEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEE--------EEE--------eCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4679999999998 9999999999999999996 777 2799999999999999999999999996
Q ss_pred CCCCeeEEEecccc
Q 009565 365 PDGKIPMSVTQAKF 378 (532)
Q Consensus 365 ~G~~~~I~V~~A~~ 378 (532)
| ++|.|..++.
T Consensus 84 -g--~~l~V~~a~~ 94 (97)
T 2xnq_A 84 -G--KKLILEVSSS 94 (97)
T ss_dssp -T--EECEEEECCC
T ss_pred -C--EEEEEEecCC
Confidence 5 6788888763
No 153
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.47 E-value=1.3e-13 Score=126.73 Aligned_cols=82 Identities=21% Similarity=0.322 Sum_probs=74.4
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+|||+++|+++|+++|++||.|.. |+|++++ +|.++|||||+|.+.++|.+|+..|||..+..|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~--------v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 164 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEE--------CRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEG 164 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTT
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEE--------EEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 4588999999999999999999999999996 9999994 799999999999999999999999999988755
Q ss_pred CCeeEEEeccc
Q 009565 367 GKIPMSVTQAK 377 (532)
Q Consensus 367 ~~~~I~V~~A~ 377 (532)
+.++|.|.+|.
T Consensus 165 ~~~~l~V~~ad 175 (175)
T 3nmr_A 165 CSSPMVVKFAD 175 (175)
T ss_dssp CSSCCEEEECC
T ss_pred CCCCeEEEecC
Confidence 45789988763
No 154
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.4e-13 Score=118.55 Aligned_cols=76 Identities=28% Similarity=0.377 Sum_probs=69.2
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
.+++|||+|||.++|+++|+++|++||.|.. |+|+++ +|||||+|.+.++|..||..|||..|. |
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~--------v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~-g 88 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIME--------IRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIE-G 88 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEE--------EEEETT------TTEEEEEESSHHHHHHHHHHHTTCEET-T
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEEC-C
Confidence 4589999999999999999999999999996 998875 799999999999999999999999996 5
Q ss_pred CCeeEEEeccccc
Q 009565 367 GKIPMSVTQAKFE 379 (532)
Q Consensus 367 ~~~~I~V~~A~~~ 379 (532)
++|.|..+...
T Consensus 89 --~~l~v~~a~~~ 99 (109)
T 1x4g_A 89 --HVVKCYWGKES 99 (109)
T ss_dssp --EECEEECCCCC
T ss_pred --cEEEEEecCCC
Confidence 67899888744
No 155
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.47 E-value=1e-13 Score=130.55 Aligned_cols=81 Identities=21% Similarity=0.368 Sum_probs=74.4
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..+++|||+|||+++|+++|+++|++||.|.. |.|+.++ +|.++|||||+|.+.++|..||..|||..|.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~- 155 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKK--------AAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLD- 155 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSE--------EEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC-
Confidence 45699999999999999999999999999996 9999997 9999999999999999999999999999996
Q ss_pred CCCeeEEEecccc
Q 009565 366 DGKIPMSVTQAKF 378 (532)
Q Consensus 366 G~~~~I~V~~A~~ 378 (532)
| +.|.|..+..
T Consensus 156 G--r~l~V~~a~~ 166 (177)
T 2f3j_A 156 G--RPMDIQLVAS 166 (177)
T ss_dssp S--SBCEEEEESS
T ss_pred C--EEEEEEEecC
Confidence 5 5688887763
No 156
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=8.6e-14 Score=120.02 Aligned_cols=76 Identities=22% Similarity=0.225 Sum_probs=66.1
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCce--e
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTP--F 363 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~--l 363 (532)
..+++|||+|||+++|+++|+++|++||.|.. |.|+++ ||||||+|.+.++|..|+..|++.. |
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~--------v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i 78 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICY--------VMMMPF------KRQALVEFENIDSAKECVTFAADVPVYI 78 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEE--------EEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 45589999999999999999999999999996 888753 7999999999999999999887754 6
Q ss_pred cCCCCeeEEEecccc
Q 009565 364 RPDGKIPMSVTQAKF 378 (532)
Q Consensus 364 ~~G~~~~I~V~~A~~ 378 (532)
. | ++|.|.++..
T Consensus 79 ~-G--r~l~V~~a~~ 90 (104)
T 1wex_A 79 A-G--QQAFFNYSTS 90 (104)
T ss_dssp S-S--SBCEEEECSS
T ss_pred C-C--EEEEEEEccC
Confidence 5 5 5688888874
No 157
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=5.8e-14 Score=124.81 Aligned_cols=78 Identities=23% Similarity=0.232 Sum_probs=68.4
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCcc----ccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCce
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGII----KEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTP 362 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I----~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~ 362 (532)
..++|||+|||+++|+++|+++|++||.| .. |+|+++ .+|+++|||||+|.+.++|.+||.. |+..
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~--------v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~ 91 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEG--------ILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDL 91 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGG--------EEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcce--------EEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCe
Confidence 45889999999999999999999999986 44 999999 5899999999999999999999975 9988
Q ss_pred ecCCCCeeEEEeccc
Q 009565 363 FRPDGKIPMSVTQAK 377 (532)
Q Consensus 363 l~~G~~~~I~V~~A~ 377 (532)
|. | +.|.|..+.
T Consensus 92 l~-g--R~i~V~~a~ 103 (123)
T 2dha_A 92 LG-K--RYIELFRST 103 (123)
T ss_dssp SS-S--CEECCEEEC
T ss_pred eC-C--eEEEEEECC
Confidence 84 4 467777665
No 158
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.46 E-value=2e-13 Score=124.13 Aligned_cols=81 Identities=17% Similarity=0.265 Sum_probs=75.1
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. +.+++++.+|.++|||||+|.+.++|.+|+..|||..|.
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 155 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLS--------GHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN- 155 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEE--------EEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET-
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC-
Confidence 34589999999999999999999999999997 999999889999999999999999999999999999996
Q ss_pred CCCeeEEEeccc
Q 009565 366 DGKIPMSVTQAK 377 (532)
Q Consensus 366 G~~~~I~V~~A~ 377 (532)
| ++|.|.+|+
T Consensus 156 g--~~i~v~~a~ 165 (166)
T 3md3_A 156 G--RPLRINWAA 165 (166)
T ss_dssp T--EECEEEESC
T ss_pred C--cEEEEEecC
Confidence 5 678988875
No 159
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.46 E-value=3.7e-14 Score=128.16 Aligned_cols=88 Identities=22% Similarity=0.302 Sum_probs=70.4
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..+++|||+|||+++|+++|+++|++||.|...-......|++. .+|.++|||||+|.+.++|..||..|||..|.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~- 118 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF- 118 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC-
Confidence 45699999999999999999999999999874000000002222 47999999999999999999999999999996
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| ++|.|.++...
T Consensus 119 g--~~l~V~~a~~~ 130 (143)
T 3egn_A 119 G--KPMVVQFARSA 130 (143)
T ss_dssp T--EECEEEECCCS
T ss_pred C--cEEEEEECCCC
Confidence 5 67999988743
No 160
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.7e-13 Score=115.88 Aligned_cols=76 Identities=30% Similarity=0.413 Sum_probs=68.3
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|.++ +|||||+|.+.++|.+||..|||..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~- 77 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGE--------VFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLR- 77 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSE--------EEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBT-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEE--------EEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeC-
Confidence 45589999999999999999999999999996 888754 799999999999999999999999997
Q ss_pred CCCeeEEEecccc
Q 009565 366 DGKIPMSVTQAKF 378 (532)
Q Consensus 366 G~~~~I~V~~A~~ 378 (532)
| ++|.|..+..
T Consensus 78 g--~~l~v~~a~~ 88 (99)
T 2cpj_A 78 G--KQLRVRFACH 88 (99)
T ss_dssp T--BCCEEEESSC
T ss_pred C--ceEEEEEcCC
Confidence 5 5688888864
No 161
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.46 E-value=2.1e-13 Score=124.13 Aligned_cols=81 Identities=30% Similarity=0.486 Sum_probs=74.4
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+|||.++|+++|+++|++||.|.. +++++++.+|.++|||||+|.+.++|.+|++.|||..|. |
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g 157 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIIT--------SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS-G 157 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT-T
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeE--------EEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC-C
Confidence 4578999999999999999999999999996 999999889999999999999999999999999999997 6
Q ss_pred CCeeEEEecc
Q 009565 367 GKIPMSVTQA 376 (532)
Q Consensus 367 ~~~~I~V~~A 376 (532)
+..+|.|.+|
T Consensus 158 ~~~~i~v~~A 167 (167)
T 1fxl_A 158 ATEPITVKFA 167 (167)
T ss_dssp CSSCCEEEEC
T ss_pred CccceEEEeC
Confidence 6567888765
No 162
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.46 E-value=1.2e-13 Score=115.90 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=68.5
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. + . .+|.++|||||+|.+.++|.+||..|||..|.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~--------~---~--~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 79 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRL--------V---S--QDGKSKGIAYIEFKSEADAEKNLEEKQGAEID- 79 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECC--------E---E--ETTEEEEEEEEEESSHHHHHHHHHHTTEEEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEE--------e---C--CCCCcceEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 34589999999999999999999999999874 4 2 47999999999999999999999999999996
Q ss_pred CCCeeEEEecccc
Q 009565 366 DGKIPMSVTQAKF 378 (532)
Q Consensus 366 G~~~~I~V~~A~~ 378 (532)
| ++|.|..+..
T Consensus 80 g--~~l~v~~a~~ 90 (96)
T 1fjc_A 80 G--RSVSLYYTGE 90 (96)
T ss_dssp T--EEEEEEECSS
T ss_pred C--eEEEEEEcCC
Confidence 5 6789988764
No 163
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=9.1e-14 Score=120.80 Aligned_cols=75 Identities=21% Similarity=0.303 Sum_probs=66.9
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
.+++|||+|||+++|+++|+++|++||.|.. |.|++ ++|||||+|.+.++|..||..|||..|. |
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g 73 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGR--------VLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFH-H 73 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSS-S
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEEC-C
Confidence 4589999999999999999999999999986 87763 5789999999999999999999999997 5
Q ss_pred CCeeEEEecccc
Q 009565 367 GKIPMSVTQAKF 378 (532)
Q Consensus 367 ~~~~I~V~~A~~ 378 (532)
++|.|.++..
T Consensus 74 --~~l~V~~a~~ 83 (111)
T 1whx_A 74 --VPLYLEWAPI 83 (111)
T ss_dssp --SBCEEEEEET
T ss_pred --eEEEEEECCC
Confidence 5688888764
No 164
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.45 E-value=2e-13 Score=124.71 Aligned_cols=81 Identities=35% Similarity=0.474 Sum_probs=74.7
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+|||.++|+++|+++|++||.|.. ++|++++.+|.++|||||+|.+.++|.+|+..|||..+. |
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g 158 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQ--------KNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE-G 158 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT-T
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEE--------EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEec-C
Confidence 4588999999999999999999999999996 999999879999999999999999999999999999997 6
Q ss_pred CCeeEEEecc
Q 009565 367 GKIPMSVTQA 376 (532)
Q Consensus 367 ~~~~I~V~~A 376 (532)
+.++|.|..|
T Consensus 159 ~~~~l~V~~A 168 (168)
T 1b7f_A 159 GSQPLSVRLA 168 (168)
T ss_dssp CSSCCEEEEC
T ss_pred CCeEEEEEeC
Confidence 6677888764
No 165
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.45 E-value=2.7e-13 Score=117.83 Aligned_cols=77 Identities=22% Similarity=0.287 Sum_probs=67.3
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
.+++|+|.|| +..+. .++|+++|++||.|.+|.|+.+ +++|||||+|.+.++|.+||+.|||..|
T Consensus 5 p~~~lfV~nL--~~~~t---------e~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~ 73 (110)
T 3s8s_A 5 PLKEVTFARL--NDNVR---------ETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV 73 (110)
T ss_dssp CCCEEEEESC--CTTCC---------HHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEECC--CCCCC---------HHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4579999999 55442 3589999999999999999864 5789999999999999999999999999
Q ss_pred CCeEEEEEeecC
Q 009565 494 GGRQIHASEDDG 505 (532)
Q Consensus 494 ~GR~I~V~~~dg 505 (532)
+||+|+|.++..
T Consensus 74 ~gr~i~V~~a~~ 85 (110)
T 3s8s_A 74 MGNIIHAQLDIK 85 (110)
T ss_dssp TTEECEEEECST
T ss_pred CCeEEEEEECCC
Confidence 999999988754
No 166
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.45 E-value=1.8e-13 Score=119.44 Aligned_cols=79 Identities=18% Similarity=0.303 Sum_probs=68.5
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc--CCCcEEEEEeCCHHHHHHHHHHHCCcEeCC
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN--HPQGVVLVRFKDRKDAQKCIELMNGRWFGG 495 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~--~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G 495 (532)
...+|||+|| |..+. .++|+++|++||.|.+|.|+.+ .++|||||+|.+.++|.+||..|||..|+|
T Consensus 4 ~~~~lfV~nL--p~~~t---------e~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g 72 (115)
T 4f25_A 4 GSGNIFIKNL--DKSID---------NKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND 72 (115)
T ss_dssp -CCEEEEESC--CTTCC---------HHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEECCC--CCCCC---------HHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3568999999 55543 2589999999999999999865 458999999999999999999999999999
Q ss_pred eEEEEEeecCCc
Q 009565 496 RQIHASEDDGLV 507 (532)
Q Consensus 496 R~I~V~~~dg~~ 507 (532)
|+|.|.++..+.
T Consensus 73 ~~i~V~~a~~~~ 84 (115)
T 4f25_A 73 RKVFVGRFKSRK 84 (115)
T ss_dssp EECEEEESSCCC
T ss_pred EEEEEEECCCcc
Confidence 999999987653
No 167
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.44 E-value=2.4e-13 Score=145.36 Aligned_cols=82 Identities=22% Similarity=0.288 Sum_probs=75.7
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|.++|++||.|.. |.|+.++.+|.++|||||+|.+.++|..||..|||..|.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~- 170 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKR--------IHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID- 170 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeE--------EEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC-
Confidence 35689999999999999999999999999997 999999889999999999999999999999999999996
Q ss_pred CCCeeEEEecccc
Q 009565 366 DGKIPMSVTQAKF 378 (532)
Q Consensus 366 G~~~~I~V~~A~~ 378 (532)
| ..|.|..+..
T Consensus 171 g--r~i~V~~a~~ 181 (437)
T 3pgw_S 171 G--RRVLVDVERG 181 (437)
T ss_pred C--EEEEEEEeCC
Confidence 5 6788888764
No 168
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.44 E-value=2.8e-13 Score=117.20 Aligned_cols=75 Identities=33% Similarity=0.515 Sum_probs=68.1
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..+++|||+|||+++|+++|+++|++||.|.. |+|+ +|||||+|.+.++|.+|+..|||..|.
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--------v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~- 91 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKE--------VKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFA- 91 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCE--------EEEE--------TTEEEEECSSHHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEE--------EEEE--------CCEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 35699999999999999999999999999996 8887 799999999999999999999999996
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| ++|.|..+...
T Consensus 92 g--~~l~V~~a~~~ 103 (108)
T 2jvo_A 92 N--QPLEVVYSKLP 103 (108)
T ss_dssp T--EECEEESCSCC
T ss_pred C--eEEEEEEecCC
Confidence 5 67999888743
No 169
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.44 E-value=1.9e-13 Score=125.55 Aligned_cols=78 Identities=24% Similarity=0.437 Sum_probs=73.3
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCC
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~ 367 (532)
.++|||+|||+++|+++|+++|++||.|.. |.|++++.+|.++|||||+|.+.++|.+|+..|||..|. |
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g- 163 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKA--------FNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG-D- 163 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEE--------EEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEET-T-
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEEC-C-
Confidence 588999999999999999999999999996 999999889999999999999999999999999999996 5
Q ss_pred CeeEEEecc
Q 009565 368 KIPMSVTQA 376 (532)
Q Consensus 368 ~~~I~V~~A 376 (532)
++|.|.+|
T Consensus 164 -~~l~V~~A 171 (172)
T 2g4b_A 164 -KKLLVQRA 171 (172)
T ss_dssp -EECEEEEC
T ss_pred -eEEEEEeC
Confidence 67888876
No 170
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=3e-13 Score=112.38 Aligned_cols=75 Identities=20% Similarity=0.268 Sum_probs=66.9
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|+ +|||||+|.+.++|.+||..|||..|.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~- 69 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIE--------CDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVK- 69 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEE--------EEEC--------SSCEEEEESCHHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEE--------EEEE--------CCEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 34588999999999999999999999999996 8886 349999999999999999999999996
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| ++|.|..+...
T Consensus 70 g--~~l~v~~a~~~ 81 (90)
T 2dnp_A 70 G--KRINVELSTKG 81 (90)
T ss_dssp T--EECEEEESCCC
T ss_pred C--cEEEEEECCCC
Confidence 5 67899888743
No 171
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.44 E-value=1e-13 Score=116.19 Aligned_cols=79 Identities=20% Similarity=0.339 Sum_probs=67.9
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccC-CeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHC-CcEe
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIG-PVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMN-GRWF 493 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG-~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~Ln-Gr~f 493 (532)
.+|+|+|| |...++ ++|+++|++|| .|.+|+|+++ .++|||||+|.+.++|.+||+.|+ +..|
T Consensus 2 ~~i~v~nL--p~~~te---------~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~ 70 (91)
T 2lxi_A 2 NIVMLRML--PQAATE---------DDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNI 70 (91)
T ss_dssp CEEEEETC--CSSCCH---------HHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEE
T ss_pred CEEEEeCC--CCCCCH---------HHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEE
Confidence 58999999 666533 48999999999 8999999864 678999999999999999999885 5679
Q ss_pred CCeEEEEEeecCCccc
Q 009565 494 GGRQIHASEDDGLVNH 509 (532)
Q Consensus 494 ~GR~I~V~~~dg~~~~ 509 (532)
+||+|+|.|+..+.+.
T Consensus 71 ~gr~i~V~~a~~~~~~ 86 (91)
T 2lxi_A 71 LGQKVSMHYSDPKPKI 86 (91)
T ss_dssp TTEEEEEECCCSCCCC
T ss_pred CCEEEEEEEcCCCCCC
Confidence 9999999998876543
No 172
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.43 E-value=2.4e-13 Score=114.52 Aligned_cols=74 Identities=18% Similarity=0.229 Sum_probs=65.0
Q ss_pred CCCcEEEEECCCC-CCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 286 KVNTHVYVTGLPD-DVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 286 ~~~~~VyV~nLP~-~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
...++|||+|||+ ++|+++|+++|++||.|.. |.|. +|||||+|.+.++|..||..|||..+.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~--------v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~ 71 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQ--------INIK--------NAFGFIQFDNPQSVRDAIECESQEMNF 71 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCE--------EEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCB
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEE--------EEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 4569999999998 9999999999999999996 8773 789999999999999999999999997
Q ss_pred CCCCeeEEEecccc
Q 009565 365 PDGKIPMSVTQAKF 378 (532)
Q Consensus 365 ~G~~~~I~V~~A~~ 378 (532)
| ++|.|..+..
T Consensus 72 -g--~~l~V~~a~~ 82 (96)
T 2kvi_A 72 -G--KKLILEVSSS 82 (96)
T ss_dssp -T--TTBCEEEEEC
T ss_pred -C--cEEEEEEcCc
Confidence 6 4567776653
No 173
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.43 E-value=3.4e-13 Score=115.02 Aligned_cols=75 Identities=20% Similarity=0.287 Sum_probs=67.3
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|+ +|||||+|.+.++|.+||..|||..|.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~--------v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~- 71 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLER--------VKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLE- 71 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEE--------EEEC--------SSCEEEEESSHHHHHHHHHHHTTEEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccC-
Confidence 45689999999999999999999999999996 8775 469999999999999999999999997
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| +.|.|..+...
T Consensus 72 g--~~l~v~~a~~~ 83 (103)
T 2dgu_A 72 G--ENIEIVFAKPP 83 (103)
T ss_dssp T--EEEEEEECCCC
T ss_pred C--CEEEEEEcCCC
Confidence 5 67999888743
No 174
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.43 E-value=2.8e-13 Score=123.30 Aligned_cols=77 Identities=21% Similarity=0.274 Sum_probs=69.7
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|+++ ++|||||+|.+.++|..||..|||..|.
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~--------v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~- 136 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRS--------VWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLC- 136 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEE--------EEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEE--------EEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 46699999999999999999999999999996 999876 5899999999999999999999999996
Q ss_pred CCCeeEEEecccc
Q 009565 366 DGKIPMSVTQAKF 378 (532)
Q Consensus 366 G~~~~I~V~~A~~ 378 (532)
| ++|.|..+..
T Consensus 137 g--~~l~v~~a~~ 147 (150)
T 2i2y_A 137 G--CRVRVELSNG 147 (150)
T ss_dssp S--SCCEEEECCC
T ss_pred C--eEEEEEEcCC
Confidence 5 5688888763
No 175
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.43 E-value=4.7e-13 Score=116.14 Aligned_cols=83 Identities=16% Similarity=0.289 Sum_probs=71.6
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc-CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN-HPQGVVLVRFKDRKDAQKCIELMNGRWFGGR 496 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~-~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR 496 (532)
..++|+|+|| |..+. .++|+++|++||.|.+|.|+.+ .++|||||+|.+.++|.+|+..|||..|+|+
T Consensus 7 ~~~~l~V~nl--p~~~t---------~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 75 (115)
T 3lqv_A 7 VNRILYIRNL--PYKIT---------AEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNR 75 (115)
T ss_dssp CCSEEEEESC--CTTCC---------HHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSC
T ss_pred CCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 4569999999 55543 3489999999999999999765 6689999999999999999999999999999
Q ss_pred EEEEEeecCCccccc
Q 009565 497 QIHASEDDGLVNHAA 511 (532)
Q Consensus 497 ~I~V~~~dg~~~~~~ 511 (532)
.|.|.++.....+..
T Consensus 76 ~l~v~~a~~~~~~~~ 90 (115)
T 3lqv_A 76 YLVVLYYNANRAFQK 90 (115)
T ss_dssp BCEEEECCHHHHTTT
T ss_pred EEEEEEecCChhhhh
Confidence 999999987655543
No 176
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=5.4e-13 Score=111.28 Aligned_cols=75 Identities=24% Similarity=0.251 Sum_probs=67.4
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|++ +||||+|.+.++|.+||..|||..|.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--------v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~- 70 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIE--------CDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQ- 70 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCE--------EEECS--------SEEEEEESCHHHHHHHHHHHTTEEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeC-
Confidence 45699999999999999999999999999996 88863 49999999999999999999999997
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| +.|.|..+...
T Consensus 71 g--~~l~V~~a~~~ 82 (92)
T 2dgt_A 71 G--KRMHVQLSTSR 82 (92)
T ss_dssp T--EEEEEEESSCC
T ss_pred C--cEEEEEEccCC
Confidence 5 67999988743
No 177
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.43 E-value=4.4e-13 Score=120.18 Aligned_cols=78 Identities=23% Similarity=0.303 Sum_probs=69.6
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCcccc-EEEEecCHHHHHHHHHHhCCceecCC
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGD-ALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~-aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
-.+|||+|||+.+|+++|+++|++||.|.. |+|+.+ .+|| |||+|.+.++|..|++.|||..|. |
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~--------V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~-g 93 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLK--------IITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIY-N 93 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEE--------EEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEE-T
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEE--------EEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeec-C
Confidence 377999999999999999999999999996 988865 2687 999999999999999999999998 5
Q ss_pred CCeeEEEeccccc
Q 009565 367 GKIPMSVTQAKFE 379 (532)
Q Consensus 367 ~~~~I~V~~A~~~ 379 (532)
+.++|+|++++..
T Consensus 94 ~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 94 ACCTLRIDFSKLT 106 (130)
T ss_dssp TEEEEEEEECSCS
T ss_pred CCcEEEEEecCCC
Confidence 5578999998753
No 178
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.43 E-value=6.3e-13 Score=110.98 Aligned_cols=72 Identities=21% Similarity=0.393 Sum_probs=63.9
Q ss_pred CcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEE
Q 009565 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQI 498 (532)
Q Consensus 419 ~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I 498 (532)
+.-|+|+|| +...++ ++|+++|.+||+|.++.+.. ++|||||+|.+.++|.+|++.|||..++||+|
T Consensus 7 ~~wL~VgNL--~~~~te---------~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I 73 (89)
T 2wbr_A 7 SSWLLLKNL--TAQIDG---------PTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANTTI 73 (89)
T ss_dssp CCEEEEECC--CTTCCC---------HHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred cceEEEeCC--CccCCH---------HHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 457999999 444332 48999999999999999976 68999999999999999999999999999999
Q ss_pred EEEee
Q 009565 499 HASED 503 (532)
Q Consensus 499 ~V~~~ 503 (532)
+|.++
T Consensus 74 ~V~~A 78 (89)
T 2wbr_A 74 FAESP 78 (89)
T ss_dssp EEECC
T ss_pred EEEEC
Confidence 99877
No 179
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.42 E-value=1.1e-13 Score=123.55 Aligned_cols=79 Identities=27% Similarity=0.325 Sum_probs=67.7
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccc-cCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIK-EDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~-~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
...++|||+|||+++|+++|+++|++|+.+. . |+|++|+. |+++|||||+|.+.++|.+||. +++..|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~~i~~~~--------v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~ 109 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNG--------ITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIG 109 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTSCEEEEE--------EECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCceeeE--------EEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEEC
Confidence 3458899999999999999999999996552 4 99999975 9999999999999999999997 5778885
Q ss_pred CCCCeeEEEeccc
Q 009565 365 PDGKIPMSVTQAK 377 (532)
Q Consensus 365 ~G~~~~I~V~~A~ 377 (532)
| +.|.|.++.
T Consensus 110 -g--R~I~V~~a~ 119 (126)
T 2hgm_A 110 -H--RYIEVFKSS 119 (126)
T ss_dssp -T--BCCCCEEEC
T ss_pred -C--EEEEEEECC
Confidence 4 567777665
No 180
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.42 E-value=4.4e-13 Score=127.61 Aligned_cols=81 Identities=23% Similarity=0.309 Sum_probs=75.0
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+|||.++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+|+..|||..|. |
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~-g 194 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKS--------ATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLG-G 194 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCS-S
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeE--------EEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeC-C
Confidence 4589999999999999999999999999996 999999889999999999999999999999999999996 5
Q ss_pred CCeeEEEecccc
Q 009565 367 GKIPMSVTQAKF 378 (532)
Q Consensus 367 ~~~~I~V~~A~~ 378 (532)
+.|.|.++..
T Consensus 195 --~~i~V~~a~~ 204 (216)
T 2qfj_A 195 --QYLRVGKAVT 204 (216)
T ss_dssp --SBCEEEECSS
T ss_pred --cEEEEEEecC
Confidence 5688888774
No 181
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.1e-12 Score=110.94 Aligned_cols=75 Identities=23% Similarity=0.293 Sum_probs=66.2
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhcc--CccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCcee
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKC--GIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPF 363 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~--G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l 363 (532)
...++|||+|||+++|+++|+++|++| |.|.. |++. +|||||+|.+.++|.+||..|||..|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~--------~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVER--------VKKI--------RDYAFVHFSNREDAVEAMKALNGKVL 76 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEE--------EEEC--------SSEEEEEESSHHHHHHHHHHHSSEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEE--------EEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEe
Confidence 456899999999999999999999999 88875 6553 67999999999999999999999999
Q ss_pred cCCCCeeEEEeccccc
Q 009565 364 RPDGKIPMSVTQAKFE 379 (532)
Q Consensus 364 ~~G~~~~I~V~~A~~~ 379 (532)
. | ++|.|..+...
T Consensus 77 ~-g--~~l~v~~a~~~ 89 (99)
T 2cpd_A 77 D-G--SPIEVTLAKPV 89 (99)
T ss_dssp T-T--EEEEEECCCCC
T ss_pred C-C--cEEEEEECCCC
Confidence 6 5 67999988754
No 182
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.7e-13 Score=118.03 Aligned_cols=69 Identities=26% Similarity=0.402 Sum_probs=61.1
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCC---CCccccEEEEecCHHHHHHHHHHh---C
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKET---GMKKGDALVTYLKEPSVALATQLL---D 359 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~t---G~~kG~aFV~F~~~esA~~Al~~L---n 359 (532)
...++|||+|||+++|+++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|.+||+.| |
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~---------~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~ 76 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV---------VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEED 76 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC---------EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEET
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE---------EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcC
Confidence 3458899999999999999999999999998 677777666 799999999999999999999988 5
Q ss_pred Ccee
Q 009565 360 GTPF 363 (532)
Q Consensus 360 G~~l 363 (532)
|..|
T Consensus 77 G~~~ 80 (114)
T 2dnl_A 77 GKLY 80 (114)
T ss_dssp TEEE
T ss_pred CcEE
Confidence 5544
No 183
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.41 E-value=4.6e-13 Score=111.01 Aligned_cols=74 Identities=22% Similarity=0.262 Sum_probs=66.3
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+|||+++|+++|+++|++| .|.. |+|. +++|||||+|.+.++|.+|+..|||..+. |
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~--------~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~-g 67 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKY--------CYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFR-G 67 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCC--------EEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEET-T
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEE--------EEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeEC-C
Confidence 45889999999999999999999999 8886 8774 57999999999999999999999999996 5
Q ss_pred CCeeEEEecccc
Q 009565 367 GKIPMSVTQAKF 378 (532)
Q Consensus 367 ~~~~I~V~~A~~ 378 (532)
++|.|..+..
T Consensus 68 --~~l~V~~a~~ 77 (88)
T 1wg1_A 68 --KDLIVQLQPT 77 (88)
T ss_dssp --EEEEEEECCC
T ss_pred --cEEEEEEcCC
Confidence 6789988763
No 184
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.41 E-value=6e-14 Score=127.35 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=68.5
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+|||+++|+++|+++|++|| |.. |+|++|+. |+++|||||+|.+.++|.+|| .+|+..|. |
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~--------v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~-g 112 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVR--------VHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQ-H 112 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSE--------EECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSS-S
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeE--------EEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEEC-C
Confidence 447899999999999999999999999 555 99999964 999999999999999999999 78999996 4
Q ss_pred CCeeEEEecccc
Q 009565 367 GKIPMSVTQAKF 378 (532)
Q Consensus 367 ~~~~I~V~~A~~ 378 (532)
+.|.|..+..
T Consensus 113 --R~i~V~~a~~ 122 (139)
T 2hgn_A 113 --RYIELFLNST 122 (139)
T ss_dssp --CCCCCEECCC
T ss_pred --EEEEEEECCC
Confidence 4577776653
No 185
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.41 E-value=5.7e-13 Score=114.95 Aligned_cols=73 Identities=23% Similarity=0.350 Sum_probs=66.4
Q ss_pred CCcEEEEECCCCC-CCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 287 VNTHVYVTGLPDD-VTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 287 ~~~~VyV~nLP~~-vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
.+++|||+|||++ +|+++|+++|++||.|.. |.| ++|||||+|.+.++|..||..|||..|.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~--------v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~- 88 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAG--------CSV--------HKGYAFVQYSNERHARAAVLGENGRVLA- 88 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSE--------EEE--------ETTEEEEECSSSHHHHHHHHHHTTCEET-
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEE--------EEE--------eCCEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 4589999999999 999999999999999996 877 5799999999999999999999999996
Q ss_pred CCCeeEEEecccc
Q 009565 366 DGKIPMSVTQAKF 378 (532)
Q Consensus 366 G~~~~I~V~~A~~ 378 (532)
| +.|.|..+..
T Consensus 89 g--~~l~V~~a~~ 99 (110)
T 1wf1_A 89 G--QTLDINMAGE 99 (110)
T ss_dssp T--EECCEEESCC
T ss_pred C--eEEEEEECCC
Confidence 5 6788888763
No 186
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=3.7e-13 Score=112.36 Aligned_cols=76 Identities=20% Similarity=0.288 Sum_probs=65.3
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCc-cccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCC-cee
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGI-IKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDG-TPF 363 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~-I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG-~~l 363 (532)
...++|||+|||+++|+++|+++|++||. |.. +.+. ++|||||+|.+.++|.+||..||| ..|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~--------~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~ 70 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAG--------QVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVEL 70 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSS--------CEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEE--------EEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeE
Confidence 34588999999999999999999999999 553 4442 479999999999999999999999 889
Q ss_pred cCCCCeeEEEeccccc
Q 009565 364 RPDGKIPMSVTQAKFE 379 (532)
Q Consensus 364 ~~G~~~~I~V~~A~~~ 379 (532)
. | ++|.|..+...
T Consensus 71 ~-g--~~l~v~~a~~~ 83 (93)
T 2cqh_A 71 H-G--KIMEVDYSVSK 83 (93)
T ss_dssp T-T--EECEEEECCCC
T ss_pred C-C--EEEEEEEccCc
Confidence 6 5 67899888743
No 187
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.41 E-value=2.5e-13 Score=124.14 Aligned_cols=79 Identities=29% Similarity=0.450 Sum_probs=72.6
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCC
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~ 367 (532)
.++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+|++ ++|..|. |
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~-g- 155 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIID--------AQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK-D- 155 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSE--------EECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSS-S-
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEE--------EEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeC-C-
Confidence 478999999999999999999999999996 9999998899999999999999999999997 8999996 5
Q ss_pred CeeEEEecccc
Q 009565 368 KIPMSVTQAKF 378 (532)
Q Consensus 368 ~~~I~V~~A~~ 378 (532)
++|.|.+|..
T Consensus 156 -~~i~V~~a~p 165 (167)
T 2cjk_A 156 -RKIEIKRAEP 165 (167)
T ss_dssp -SCEEEEECCC
T ss_pred -eEEEEeecCC
Confidence 5688888763
No 188
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=1.7e-13 Score=119.96 Aligned_cols=75 Identities=12% Similarity=0.116 Sum_probs=64.9
Q ss_pred CCcEEEEECCCCC-CCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCC--cee
Q 009565 287 VNTHVYVTGLPDD-VTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDG--TPF 363 (532)
Q Consensus 287 ~~~~VyV~nLP~~-vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG--~~l 363 (532)
.+++|||+|||++ +|+++|+++|++||.|.. |+|++ +||||||+|.+.++|..||..||+ ..|
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~--------v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l 89 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKN--------YILMR------MKSQAFIEMETREDAMAMVDHCLKKALWF 89 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSE--------EEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCS
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEE--------EEEec------CCCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 3589999999998 999999999999999996 88874 479999999999999999998865 447
Q ss_pred cCCCCeeEEEecccc
Q 009565 364 RPDGKIPMSVTQAKF 378 (532)
Q Consensus 364 ~~G~~~~I~V~~A~~ 378 (532)
. | ++|.|.++..
T Consensus 90 ~-G--r~l~V~~a~~ 101 (112)
T 1x4f_A 90 Q-G--RCVKVDLSEK 101 (112)
T ss_dssp S-S--SCCEEEEECS
T ss_pred C-C--EEEEEEECcc
Confidence 5 5 5688888763
No 189
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.41 E-value=1.3e-13 Score=117.34 Aligned_cols=86 Identities=14% Similarity=0.187 Sum_probs=71.5
Q ss_pred CcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeC
Q 009565 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFG 494 (532)
Q Consensus 419 ~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~ 494 (532)
.++|||.|| |. . ++.-...+.++|+++|++||.|.+|.|+.+ +++|||||+|.+.++|.+||..|||..|+
T Consensus 6 ~~~vfV~nL--p~-v--~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 80 (100)
T 3ns6_A 6 DQYIVVNGA--PV-I--PSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD 80 (100)
T ss_dssp GGEEEEESC--CC-C--BGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CcEEEEeCC--Cc-C--ChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC
Confidence 469999999 43 1 112224467899999999999999999855 46899999999999999999999999999
Q ss_pred C-eEEEEEeecCCccc
Q 009565 495 G-RQIHASEDDGLVNH 509 (532)
Q Consensus 495 G-R~I~V~~~dg~~~~ 509 (532)
| |+|+|.++..+.+|
T Consensus 81 g~r~l~V~~a~~~~~~ 96 (100)
T 3ns6_A 81 LKHRLFLYTMKDVERY 96 (100)
T ss_dssp SSCBCEEEESHHHHHH
T ss_pred CCeEEEEEECchhhhh
Confidence 9 99999988765444
No 190
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1e-12 Score=109.63 Aligned_cols=78 Identities=27% Similarity=0.402 Sum_probs=67.7
Q ss_pred CCCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCC
Q 009565 415 KLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNG 490 (532)
Q Consensus 415 ~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnG 490 (532)
.....++|+|.|| |..+. .++|+++|++||.|..|.|+.+ +++|||||+|.+.++|.+|+..|||
T Consensus 12 ~~~~~~~l~V~nl--p~~~t---------~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 80 (94)
T 2e5h_A 12 LAPSKSTVYVSNL--PFSLT---------NNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINN 80 (94)
T ss_dssp CCCCTTSEEEESC--CTTSC---------HHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTT
T ss_pred CCCCCCEEEEECC--CCCCC---------HHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCC
Confidence 3445679999999 55442 3589999999999999999864 5689999999999999999999999
Q ss_pred cEeCCeEEEEEee
Q 009565 491 RWFGGRQIHASED 503 (532)
Q Consensus 491 r~f~GR~I~V~~~ 503 (532)
..|+|++|+|.++
T Consensus 81 ~~~~g~~l~v~~a 93 (94)
T 2e5h_A 81 KQLFGRVIKASIA 93 (94)
T ss_dssp EEETTEEEEEEEC
T ss_pred CeeCCcEEEEEec
Confidence 9999999999885
No 191
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.8e-12 Score=110.17 Aligned_cols=83 Identities=22% Similarity=0.380 Sum_probs=71.6
Q ss_pred CCCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc--CCCcEEEEEeCCHHHHHHHHHHHCCcE
Q 009565 415 KLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN--HPQGVVLVRFKDRKDAQKCIELMNGRW 492 (532)
Q Consensus 415 ~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~--~~kG~aFV~F~s~eeA~kAi~~LnGr~ 492 (532)
....+++|+|.|| |..+. .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+||..|||..
T Consensus 11 ~~~~~~~l~V~nl--p~~~t---------~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 79 (103)
T 2cq3_A 11 SKSTPKRLHVSNI--PFRFR---------DPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV 79 (103)
T ss_dssp CSCCCCEEEEESC--CTTCC---------HHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCE
T ss_pred CCCCCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3345679999999 55543 3489999999999999999865 468999999999999999999999999
Q ss_pred eCCeEEEEEeecCCcc
Q 009565 493 FGGRQIHASEDDGLVN 508 (532)
Q Consensus 493 f~GR~I~V~~~dg~~~ 508 (532)
|+|++|+|.++..+..
T Consensus 80 ~~g~~l~v~~a~~~~~ 95 (103)
T 2cq3_A 80 VEGRKIEVNNATARVM 95 (103)
T ss_dssp ETTEECEEEECCSSCC
T ss_pred ECCEEEEEEEcccCCC
Confidence 9999999999987643
No 192
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.41 E-value=7.5e-13 Score=113.54 Aligned_cols=88 Identities=10% Similarity=0.160 Sum_probs=73.5
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc--CCCcEEEEEeCCHHHHHHHHHHHCCcEeCC
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN--HPQGVVLVRFKDRKDAQKCIELMNGRWFGG 495 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~--~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G 495 (532)
.+++|+|.|| |....++ ...++++|+++|++||.|.+|.|++. +++|||||+|.+.++|.+||..|||..|+|
T Consensus 14 ~~~~l~V~nL--p~~~~~~---~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 14 IDSVIVVDNV--PQVGPDR---LEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSEEEEESC--CCCCTTT---TTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCEEEEeCC--Ccchhhh---hHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 4579999999 4433111 12256799999999999999999843 678999999999999999999999999999
Q ss_pred e-EEEEEeecCCcccc
Q 009565 496 R-QIHASEDDGLVNHA 510 (532)
Q Consensus 496 R-~I~V~~~dg~~~~~ 510 (532)
| +|+|.+++...+|.
T Consensus 89 ~~~l~V~~a~~~~k~~ 104 (105)
T 2nlw_A 89 QHTFRVNLFTDFDKYM 104 (105)
T ss_dssp TCEEEEECSCCCCCCC
T ss_pred CceEEEEEcchHhhhc
Confidence 9 99999998877764
No 193
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.41 E-value=8.7e-13 Score=108.35 Aligned_cols=78 Identities=24% Similarity=0.453 Sum_probs=66.7
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
..++|+|.|| |.... .++|+++|++||.|.+|.++.+ .++|||||+|.+.++|.+|+..|||..|
T Consensus 5 ~~~~l~v~nl--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 73 (87)
T 3bs9_A 5 SHFHVFVGDL--SPEIT---------TAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL 73 (87)
T ss_dssp -CEEEEEESC--CTTCC---------HHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CceEEEEeCC--CCCCC---------HHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3569999999 55542 3589999999999999999865 4689999999999999999999999999
Q ss_pred CCeEEEEEeecCC
Q 009565 494 GGRQIHASEDDGL 506 (532)
Q Consensus 494 ~GR~I~V~~~dg~ 506 (532)
+|++|+|.++..+
T Consensus 74 ~g~~l~v~~a~~k 86 (87)
T 3bs9_A 74 GGRQIRTNWATRK 86 (87)
T ss_dssp TTEECEEEEEC--
T ss_pred CCeEEEEEecCCC
Confidence 9999999998754
No 194
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.41 E-value=5e-13 Score=109.84 Aligned_cols=72 Identities=22% Similarity=0.384 Sum_probs=62.9
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhcc----C-------ccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHH
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKC----G-------IIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALA 354 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~----G-------~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~A 354 (532)
+..++|||+|||+++|+++|+++|++| | .|.. +++.++ +|||||+|.+.++|.+|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~--------~~~~~~------kg~afV~f~~~~~a~~A 69 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLA--------VQINQD------KNFAFLEFRSVDETTQA 69 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEE--------EEECSS------SSEEEEEESSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceE--------EEecCC------CcEEEEEcCCHHHHHHH
Confidence 456899999999999999999999999 8 6664 666543 79999999999999999
Q ss_pred HHHhCCceecCCCCeeEEEec
Q 009565 355 TQLLDGTPFRPDGKIPMSVTQ 375 (532)
Q Consensus 355 l~~LnG~~l~~G~~~~I~V~~ 375 (532)
+ .|||..|. | +.|+|++
T Consensus 70 ~-~l~g~~~~-g--~~l~V~r 86 (87)
T 2hzc_A 70 M-AFDGIIFQ-G--QSLKIRR 86 (87)
T ss_dssp G-GGTTCEET-T--EECEEEC
T ss_pred H-hcCCCEEC-C--eEEEEeC
Confidence 9 99999997 5 6688875
No 195
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.40 E-value=1.1e-12 Score=106.87 Aligned_cols=76 Identities=17% Similarity=0.251 Sum_probs=67.1
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCC
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGG 495 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G 495 (532)
.+|+|+|| |.... .++|+++|++||.|.+|.++.+ .++|+|||+|.+.++|.+|+..|||..|+|
T Consensus 2 ~~l~V~nl--p~~~t---------~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 70 (83)
T 3md1_A 2 FNLFVGDL--NVNVD---------DETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG 70 (83)
T ss_dssp EEEEEECC--CTTCC---------HHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred eEEEEeCC--CCCCC---------HHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCC
Confidence 48999999 55543 3589999999999999999855 458999999999999999999999999999
Q ss_pred eEEEEEeecCC
Q 009565 496 RQIHASEDDGL 506 (532)
Q Consensus 496 R~I~V~~~dg~ 506 (532)
++|+|.++..+
T Consensus 71 ~~l~v~~a~~~ 81 (83)
T 3md1_A 71 RPLRINWAAKL 81 (83)
T ss_dssp EECEEEECCCC
T ss_pred cEEEEEecCcC
Confidence 99999998765
No 196
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.40 E-value=1e-12 Score=108.05 Aligned_cols=78 Identities=18% Similarity=0.324 Sum_probs=68.2
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccC-----CCcEEEEEeCCHHHHHHHHHHHCCcE
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENH-----PQGVVLVRFKDRKDAQKCIELMNGRW 492 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~-----~kG~aFV~F~s~eeA~kAi~~LnGr~ 492 (532)
.+++|+|.|| |.... .++|+++|++||.|..|.|+.+. ++|+|||+|.+.++|.+|+..|||..
T Consensus 3 ~~~~l~V~nl--p~~~t---------~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 71 (88)
T 4a8x_A 3 KPTKVHIGRL--TRNVT---------KDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQ 71 (88)
T ss_dssp CCCEEEEECC--CTTCC---------HHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCEEEEeCC--CCCCC---------HHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCe
Confidence 3579999999 55542 34899999999999999998653 78999999999999999999999999
Q ss_pred eCCeEEEEEeecCC
Q 009565 493 FGGRQIHASEDDGL 506 (532)
Q Consensus 493 f~GR~I~V~~~dg~ 506 (532)
|+|+.|+|.++...
T Consensus 72 ~~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 72 IDGQEITATAVLAP 85 (88)
T ss_dssp ETTEECEEEEECCC
T ss_pred ECCeEEEEEECCCC
Confidence 99999999998653
No 197
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.1e-12 Score=109.60 Aligned_cols=79 Identities=15% Similarity=0.280 Sum_probs=69.5
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
.+++|+|.|| |..+. .++|+++|++||.|..|.++.+ +++|||||+|.+.++|.+|+..|||..|
T Consensus 4 ~~~~l~v~nl--p~~~t---------~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 72 (95)
T 2dnz_A 4 GSSGLYVGSL--HFNIT---------EDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL 72 (95)
T ss_dssp CCCEEEEESC--CTTCC---------HHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS
T ss_pred CCcEEEEeCC--CCCCC---------HHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee
Confidence 4679999999 55442 3589999999999999999865 5689999999999999999999999999
Q ss_pred CCeEEEEEeecCCc
Q 009565 494 GGRQIHASEDDGLV 507 (532)
Q Consensus 494 ~GR~I~V~~~dg~~ 507 (532)
+|++|+|.++..+.
T Consensus 73 ~g~~l~V~~a~~~~ 86 (95)
T 2dnz_A 73 AGRPMRVGHVTERL 86 (95)
T ss_dssp SSSCCEEEESSCCC
T ss_pred CCcEEEEEEccccc
Confidence 99999999987764
No 198
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.40 E-value=6.4e-13 Score=124.79 Aligned_cols=83 Identities=23% Similarity=0.407 Sum_probs=76.4
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+|+..|||..|.
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--------~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 182 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKA--------FNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG- 182 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEE--------EEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccE--------EEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 45699999999999999999999999999986 999999889999999999999999999999999999996
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| +.|.|.++...
T Consensus 183 g--~~l~v~~a~~~ 194 (198)
T 2yh0_A 183 D--KKLLVQRASVG 194 (198)
T ss_dssp T--EECEEEESCCC
T ss_pred C--EEEEEEECCCC
Confidence 5 67899888743
No 199
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=3.3e-13 Score=113.25 Aligned_cols=78 Identities=18% Similarity=0.299 Sum_probs=67.9
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeE-EEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRI-KIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~pri-kl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..++|||+|||+++|+++|+++|++||.|.. | .|++++.+|. |||+|.+.++|..||..|||..|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~- 80 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVES--------CEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLE- 80 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEE--------EEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCS-
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEE--------EEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEEC-
Confidence 4588999999999999999999999999996 8 4887754433 999999999999999999999997
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| ++|.|..+...
T Consensus 81 g--~~l~V~~a~~~ 92 (96)
T 2e44_A 81 N--FTLKVAYIPDE 92 (96)
T ss_dssp S--CBCEEEECCCC
T ss_pred C--cEEEEEEcCcc
Confidence 5 56888887643
No 200
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.40 E-value=5.2e-13 Score=111.44 Aligned_cols=74 Identities=22% Similarity=0.296 Sum_probs=62.2
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+|||+++|+++|+++|++||.|.+ |+|+++ +||||||+|.+.++|.. |+|..+. +
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~--------v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~-~ 71 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVD--------VFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLI-I 71 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EECCSS-----CCSEEEEEESCHHHHHH----HTTCEEE-E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEE--------EEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcc-c
Confidence 4589999999999999999999999999997 988874 79999999999999883 5677665 3
Q ss_pred CCeeEEEecccc
Q 009565 367 GKIPMSVTQAKF 378 (532)
Q Consensus 367 ~~~~I~V~~A~~ 378 (532)
+.++|.|..+..
T Consensus 72 ~g~~v~v~~a~~ 83 (89)
T 3d2w_A 72 KGISVHISNAEP 83 (89)
T ss_dssp TTEEEEEEECC-
T ss_pred CCEEEEEEEcCC
Confidence 447899988873
No 201
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.40 E-value=1.9e-13 Score=123.08 Aligned_cols=119 Identities=16% Similarity=0.205 Sum_probs=71.1
Q ss_pred cEEEEecCHHHHHHHHHHhCCceecCCCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCC
Q 009565 340 DALVTYLKEPSVALATQLLDGTPFRPDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIP 419 (532)
Q Consensus 340 ~aFV~F~~~esA~~Al~~LnG~~l~~G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~ 419 (532)
++|++|.+...+..|+..|+|.... |. ..+ . ++ .........
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~-g~-~~~--~---------------------------------~~-~~~~~~~~~ 47 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQM-GR-GSM--S---------------------------------YG-RPPPDVEGM 47 (135)
T ss_dssp -------------------------------C--C---------------------------------SC-CSCSSGGGC
T ss_pred cccccccCCCchhhhhhhccCCCCC-CC-CCC--C---------------------------------cC-CCCCCCCCC
Confidence 6889999999999999999887664 21 100 0 00 011122235
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCC
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGG 495 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G 495 (532)
++|+|.|| |..+ ..++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+||..|||..|+|
T Consensus 48 ~~l~V~nL--p~~~---------te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g 116 (135)
T 2lea_A 48 TSLKVDNL--TYRT---------SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 116 (135)
T ss_dssp CCEEEECC--CSSC---------HHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS
T ss_pred CEEEEeCC--CCCC---------CHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 68999999 5544 34689999999999999999754 678999999999999999999999999999
Q ss_pred eEEEEEeecCCc
Q 009565 496 RQIHASEDDGLV 507 (532)
Q Consensus 496 R~I~V~~~dg~~ 507 (532)
++|+|.++....
T Consensus 117 ~~l~V~~a~~~~ 128 (135)
T 2lea_A 117 RELRVQMARYGR 128 (135)
T ss_dssp SCCEEEECCCCC
T ss_pred EEEEEEECCCCC
Confidence 999999988753
No 202
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.3e-12 Score=109.08 Aligned_cols=77 Identities=25% Similarity=0.342 Sum_probs=67.1
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcE
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRW 492 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~ 492 (532)
...++|+|.|| |..+. .++|+++|++||.|..|.++.+ +++|+|||+|.+.++|.+|+..|||..
T Consensus 13 ~~~~~l~v~nl--p~~~t---------~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 81 (95)
T 2cqc_A 13 DPNCCLGVFGL--SLYTT---------ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME 81 (95)
T ss_dssp CGGGCEEEESC--CSSCC---------HHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred CCCCEEEEECC--CCCCC---------HHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCE
Confidence 34569999999 55542 2489999999999999999864 568999999999999999999999999
Q ss_pred eCCeEEEEEeec
Q 009565 493 FGGRQIHASEDD 504 (532)
Q Consensus 493 f~GR~I~V~~~d 504 (532)
|+|++|+|.++.
T Consensus 82 ~~g~~l~v~~a~ 93 (95)
T 2cqc_A 82 LDGRRIRVSGPS 93 (95)
T ss_dssp ETTEEEEEECCS
T ss_pred ECCEEEEEEecC
Confidence 999999998865
No 203
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=7.6e-13 Score=110.91 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=65.0
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+|||+++|+++|+++|++||.|.. | +.++.+|. ||||+|.+.++|.+||. |||..|. |
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~--------v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~-g 71 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVAS--------V--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLG-G 71 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEE--------E--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEET-T
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEE--------E--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEEC-C
Confidence 4479999999999999999999999999985 6 55655666 99999999999999999 9999996 5
Q ss_pred CCeeEEEeccc
Q 009565 367 GKIPMSVTQAK 377 (532)
Q Consensus 367 ~~~~I~V~~A~ 377 (532)
+.|.|..+.
T Consensus 72 --~~l~V~~a~ 80 (94)
T 2e5g_A 72 --HRLRVRPRE 80 (94)
T ss_dssp --EECCCBCSC
T ss_pred --EEEEEEECC
Confidence 678888765
No 204
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.39 E-value=1e-12 Score=107.46 Aligned_cols=75 Identities=17% Similarity=0.286 Sum_probs=65.9
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
..++|+|.|| |.... .++|+++|++||.|..|.++.+ +++|+|||+|.+.++|.+|+..|||..|
T Consensus 6 ~~~~l~V~nl--~~~~~---------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 74 (85)
T 3mdf_A 6 TKRVLYVGGL--AEEVD---------DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL 74 (85)
T ss_dssp CSSEEEEECC--CTTCC---------HHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEECC--CCCCC---------HHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4579999999 55542 3589999999999999999754 4689999999999999999999999999
Q ss_pred CCeEEEEEee
Q 009565 494 GGRQIHASED 503 (532)
Q Consensus 494 ~GR~I~V~~~ 503 (532)
+|++|+|.++
T Consensus 75 ~g~~l~v~~a 84 (85)
T 3mdf_A 75 FGRTIRVNLA 84 (85)
T ss_dssp TTEECEEEEC
T ss_pred CCcEEEEEEc
Confidence 9999999875
No 205
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=2.1e-12 Score=108.86 Aligned_cols=85 Identities=21% Similarity=0.234 Sum_probs=69.5
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc-CCCcEEEEEeCCHHHHHHHHHHHCCcEeCC
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN-HPQGVVLVRFKDRKDAQKCIELMNGRWFGG 495 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~-~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G 495 (532)
...++|||.|| |.....+ +++..|+++|++||.|.+|.|+.+ ..+|||||+|.+.++|.+||..|||..|+|
T Consensus 7 ~~~~~l~V~nL--~~~~~~~-----~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g 79 (96)
T 2dgx_A 7 GNGADVQVSNI--DYRLSRK-----ELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGS 79 (96)
T ss_dssp SSCEEEEEESC--CTTSCHH-----HHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEECC--CCCCCHH-----HHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34579999999 5554322 233344599999999999999865 238999999999999999999999999999
Q ss_pred eEEEEEeecCCcc
Q 009565 496 RQIHASEDDGLVN 508 (532)
Q Consensus 496 R~I~V~~~dg~~~ 508 (532)
|+|+|.++.+..+
T Consensus 80 r~l~V~~a~~~~~ 92 (96)
T 2dgx_A 80 KKILVSLATGASG 92 (96)
T ss_dssp EEEEEEECCCSSC
T ss_pred eEEEEEEcCCCCC
Confidence 9999999987653
No 206
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.39 E-value=8.7e-13 Score=126.88 Aligned_cols=78 Identities=19% Similarity=0.307 Sum_probs=71.4
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCC
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDG 367 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~ 367 (532)
.++|||+|||+++|+++|+++|++||.|.. |+|++|+ +.++|||||+|.+.++|.+||+.|||..|. |
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~--------~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~-g- 170 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILS--------CKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLN-D- 170 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEET-T-
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEE--------EEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEEC-C-
Confidence 368999999999999999999999999997 9999984 568999999999999999999999999996 5
Q ss_pred CeeEEEecccc
Q 009565 368 KIPMSVTQAKF 378 (532)
Q Consensus 368 ~~~I~V~~A~~ 378 (532)
++|.|.++..
T Consensus 171 -~~i~V~~a~~ 180 (213)
T 4f02_A 171 -RKVFVGRFKS 180 (213)
T ss_dssp -EECEEEECCC
T ss_pred -EEEEEEEcCC
Confidence 6799988873
No 207
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.1e-12 Score=111.29 Aligned_cols=82 Identities=21% Similarity=0.353 Sum_probs=71.2
Q ss_pred CCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCc
Q 009565 416 LTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGR 491 (532)
Q Consensus 416 ~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr 491 (532)
....++|+|.|| |..+. .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+||..|||.
T Consensus 9 ~~~~~~l~v~nL--p~~~t---------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 77 (102)
T 1x5s_A 9 ASDEGKLFVGGL--SFDTN---------EQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK 77 (102)
T ss_dssp CCCCSEEEEESC--CTTCC---------HHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEECC--CCCCC---------HHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 345679999999 55542 3589999999999999999865 47899999999999999999999999
Q ss_pred EeCCeEEEEEeecCCcc
Q 009565 492 WFGGRQIHASEDDGLVN 508 (532)
Q Consensus 492 ~f~GR~I~V~~~dg~~~ 508 (532)
.|+|++|+|.++..+..
T Consensus 78 ~~~g~~l~v~~a~~~~~ 94 (102)
T 1x5s_A 78 SVDGRQIRVDQAGKSSD 94 (102)
T ss_dssp CTTSCCCEEEEEECCCC
T ss_pred EECCeEEEEEECCCCCC
Confidence 99999999999987654
No 208
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.39 E-value=8.1e-13 Score=122.88 Aligned_cols=80 Identities=23% Similarity=0.287 Sum_probs=69.8
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
.-.+|||+|||+.+|+++|+++|++||.|.. |.|+.+ .++|||||+|.+.++|..|++.|||..|. |
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~--------V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~-g 111 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLK--------IITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIY-N 111 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEE--------EEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSS-S
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEE--------EEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEec-C
Confidence 3477999999999999999999999999996 888754 35799999999999999999999999997 4
Q ss_pred CCeeEEEeccccc
Q 009565 367 GKIPMSVTQAKFE 379 (532)
Q Consensus 367 ~~~~I~V~~A~~~ 379 (532)
+.++|+|.+++..
T Consensus 112 ~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 112 ACCTLRIDFSKLT 124 (164)
T ss_dssp SCSCEEEEECSSS
T ss_pred CCcEEEEEEecCC
Confidence 3356899888743
No 209
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=2.7e-12 Score=109.17 Aligned_cols=80 Identities=21% Similarity=0.330 Sum_probs=70.0
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc--CCCcEEEEEeCCHHHHHHHHHHHCCcEeC
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN--HPQGVVLVRFKDRKDAQKCIELMNGRWFG 494 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~--~~kG~aFV~F~s~eeA~kAi~~LnGr~f~ 494 (532)
...++|||.|| |..+. .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+||..|||..|.
T Consensus 13 ~~~~~l~V~nl--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cqi_A 13 GQPRTLYVGNL--SRDVT---------EVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKIL 81 (103)
T ss_dssp CCCCEEEEESC--CTTCC---------HHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCEEEEeCC--CccCC---------HHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcC
Confidence 34679999999 55542 3589999999999999999875 46799999999999999999999999999
Q ss_pred CeEEEEEeecCCc
Q 009565 495 GRQIHASEDDGLV 507 (532)
Q Consensus 495 GR~I~V~~~dg~~ 507 (532)
|++|+|.++....
T Consensus 82 g~~l~V~~a~~~~ 94 (103)
T 2cqi_A 82 GKEVKVNWATTPS 94 (103)
T ss_dssp TEEEEEEECCCTT
T ss_pred CCeEEEEECCCCc
Confidence 9999999988764
No 210
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.39 E-value=1.6e-12 Score=109.31 Aligned_cols=80 Identities=20% Similarity=0.399 Sum_probs=69.8
Q ss_pred CcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeC
Q 009565 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFG 494 (532)
Q Consensus 419 ~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~ 494 (532)
+++|+|+|| |..+. .++|+++|++||.|.+|.|+.+ .++|||||+|.+.++|.+|+..|||..|+
T Consensus 2 ~~~l~V~nL--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 70 (96)
T 2x1f_A 2 SRVVYLGSI--PYDQT---------EEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG 70 (96)
T ss_dssp CSEEEEESC--CTTCC---------HHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CcEEEEECC--CCCCC---------HHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 468999999 55543 3589999999999999999865 56899999999999999999999999999
Q ss_pred CeEEEEEeecCCccc
Q 009565 495 GRQIHASEDDGLVNH 509 (532)
Q Consensus 495 GR~I~V~~~dg~~~~ 509 (532)
|+.|+|.++..+...
T Consensus 71 g~~l~V~~a~~~~~~ 85 (96)
T 2x1f_A 71 SRFLKCGYSSNSDIS 85 (96)
T ss_dssp TEECEEEECSCSSGG
T ss_pred CeEEEEEEcCCCCCC
Confidence 999999999887443
No 211
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=1.9e-12 Score=109.23 Aligned_cols=80 Identities=20% Similarity=0.306 Sum_probs=69.9
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
.+++|+|.|| |..+. .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+||..|||..|
T Consensus 7 ~~~~l~V~nl--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 75 (99)
T 1whw_A 7 GSGRLFVRNL--SYTSS---------EEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF 75 (99)
T ss_dssp SCEEEEEECC--CTTCC---------HHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES
T ss_pred CCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4579999999 55543 3489999999999999999865 4789999999999999999999999999
Q ss_pred CCeEEEEEeecCCcc
Q 009565 494 GGRQIHASEDDGLVN 508 (532)
Q Consensus 494 ~GR~I~V~~~dg~~~ 508 (532)
+|++|+|.++..+..
T Consensus 76 ~g~~l~V~~a~~~~~ 90 (99)
T 1whw_A 76 QGRMLHVLPSTIKKE 90 (99)
T ss_dssp SSCEEEEEECCCCST
T ss_pred CCcEEEEEEcCCCcc
Confidence 999999999887643
No 212
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.38 E-value=1e-12 Score=117.30 Aligned_cols=84 Identities=17% Similarity=0.206 Sum_probs=71.1
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc-CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN-HPQGVVLVRFKDRKDAQKCIELMNGRWFGGR 496 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~-~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR 496 (532)
..++|||+|| +..+.. .++++.|+++|++||.|.+|.+... +++|||||+|.+.++|.+||..|||..|.||
T Consensus 28 p~~~LfV~nL--~~~~~e-----~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 28 PSQVVLITNI--NPEVPK-----EKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CCSEEEEESC--CTTSCH-----HHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCEEEEeCC--CCCCCH-----HHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 3569999999 444322 3456678899999999999998753 7899999999999999999999999999999
Q ss_pred EEEEEeecCCcc
Q 009565 497 QIHASEDDGLVN 508 (532)
Q Consensus 497 ~I~V~~~dg~~~ 508 (532)
+|+|.|+..+..
T Consensus 101 ~l~V~~a~~~~~ 112 (127)
T 2a3j_A 101 PLVITFSETPQS 112 (127)
T ss_dssp CCEEEECCCCCH
T ss_pred EEEEEEccCcch
Confidence 999999887643
No 213
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.2e-12 Score=110.92 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=70.9
Q ss_pred CCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCc
Q 009565 416 LTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGR 491 (532)
Q Consensus 416 ~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr 491 (532)
....++|+|.|| |..+. .++|+++|++||.|..|.|+.+ +++|||||+|.+.++|.+||..|||.
T Consensus 9 ~~~~~~l~V~nL--p~~~t---------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 77 (102)
T 2cqb_A 9 ATTKRVLYVGGL--AEEVD---------DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 77 (102)
T ss_dssp CCCCSCEEEESC--CSSCC---------HHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTE
T ss_pred CCCCCEEEEeCC--CCCCC---------HHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 345679999999 55543 3589999999999999999764 57899999999999999999999999
Q ss_pred EeCCeEEEEEeecCCcc
Q 009565 492 WFGGRQIHASEDDGLVN 508 (532)
Q Consensus 492 ~f~GR~I~V~~~dg~~~ 508 (532)
.|+|++|+|.++..+..
T Consensus 78 ~~~g~~l~V~~a~~~~~ 94 (102)
T 2cqb_A 78 ELFGRTIRVNLAKPMRI 94 (102)
T ss_dssp EETTEEEEEEECCCCCC
T ss_pred EECCcEEEEEeCCCCCC
Confidence 99999999999887643
No 214
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.37 E-value=1.6e-12 Score=115.62 Aligned_cols=76 Identities=18% Similarity=0.240 Sum_probs=66.9
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCcccc-EEEEecCHHHHHHHHHHhCCceecCCC
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGD-ALVTYLKEPSVALATQLLDGTPFRPDG 367 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~-aFV~F~~~esA~~Al~~LnG~~l~~G~ 367 (532)
..|||+|||+.+|+++|+++|++||.|.. |+|+.. .|| |||+|.+.++|..|++.|||..|. |+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~--------v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~-g~ 90 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQR--------IVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIY-AG 90 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEE--------EEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCB-TT
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEE--------EEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEec-CC
Confidence 56899999999999999999999999996 888652 286 999999999999999999999997 54
Q ss_pred CeeEEEeccccc
Q 009565 368 KIPMSVTQAKFE 379 (532)
Q Consensus 368 ~~~I~V~~A~~~ 379 (532)
.++|+|.+|+..
T Consensus 91 ~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 91 CCTLKIEYARPT 102 (124)
T ss_dssp BSEEEEECCSCS
T ss_pred CeEEEEEEecCC
Confidence 467999988743
No 215
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.37 E-value=1.1e-12 Score=113.37 Aligned_cols=81 Identities=17% Similarity=0.284 Sum_probs=70.2
Q ss_pred CCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCc
Q 009565 416 LTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGR 491 (532)
Q Consensus 416 ~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr 491 (532)
...+++|+|+|| |..+. .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+|+..|||.
T Consensus 23 ~~~~~~l~V~nL--p~~~t---------e~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~ 91 (108)
T 2jrs_A 23 SAGPMRLYVGSL--HFNIT---------EDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF 91 (108)
T ss_dssp CSSCEEEEEECC--CSSCC---------HHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 345679999999 55542 3489999999999999999865 45899999999999999999999999
Q ss_pred EeCCeEEEEEeecCCc
Q 009565 492 WFGGRQIHASEDDGLV 507 (532)
Q Consensus 492 ~f~GR~I~V~~~dg~~ 507 (532)
.|+|++|+|.++..++
T Consensus 92 ~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 92 ELAGRPMKVGHVTERT 107 (108)
T ss_dssp CSSSSCCEEECSCSSC
T ss_pred EECCEEEEEEEcccCC
Confidence 9999999999987764
No 216
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.37 E-value=1.3e-12 Score=122.52 Aligned_cols=81 Identities=23% Similarity=0.329 Sum_probs=72.7
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+|||+++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|.+||.. +|..|. |
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~-G 172 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV--------IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVN-G 172 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEET-T
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEE--------EEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEEC-C
Confidence 4489999999999999999999999999996 99999988999999999999999999999975 799996 5
Q ss_pred CCeeEEEeccccc
Q 009565 367 GKIPMSVTQAKFE 379 (532)
Q Consensus 367 ~~~~I~V~~A~~~ 379 (532)
+.|.|.++...
T Consensus 173 --~~i~v~~a~~k 183 (196)
T 1l3k_A 173 --HNCEVRKALSK 183 (196)
T ss_dssp --EECEEEECC--
T ss_pred --EEEEEEecCCh
Confidence 67888888743
No 217
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.7e-12 Score=110.37 Aligned_cols=82 Identities=20% Similarity=0.313 Sum_probs=70.8
Q ss_pred CCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCc
Q 009565 416 LTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGR 491 (532)
Q Consensus 416 ~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr 491 (532)
....++|+|.|| |..+. .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+||..|||.
T Consensus 12 ~~~~~~l~V~nl--p~~~t---------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 80 (103)
T 2cq0_A 12 ADDNATIRVTNL--SEDTR---------ETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGF 80 (103)
T ss_dssp CSSSEEEEEESC--CTTCC---------HHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCCCEEEEeCC--CCCCC---------HHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCC
Confidence 345679999999 55542 3589999999999999999865 56899999999999999999999999
Q ss_pred EeCCeEEEEEeecCCcc
Q 009565 492 WFGGRQIHASEDDGLVN 508 (532)
Q Consensus 492 ~f~GR~I~V~~~dg~~~ 508 (532)
.|+|++|+|.++..+..
T Consensus 81 ~~~g~~l~v~~a~~~~~ 97 (103)
T 2cq0_A 81 GYDHLILNVEWAKPSTN 97 (103)
T ss_dssp EETTEECEEEESSCCCC
T ss_pred eeCCcEEEEEECCCCCC
Confidence 99999999999887643
No 218
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.37 E-value=2.5e-12 Score=111.56 Aligned_cols=81 Identities=23% Similarity=0.444 Sum_probs=70.3
Q ss_pred CCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCc
Q 009565 416 LTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGR 491 (532)
Q Consensus 416 ~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr 491 (532)
....++|||.|| |..+. .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+||..|||.
T Consensus 12 ~~~~~~l~V~nl--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (115)
T 2dgo_A 12 TSNHFHVFVGDL--SPEIT---------TEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 80 (115)
T ss_dssp STTCEEEEEESC--CTTCC---------HHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCCcEEEEeCC--CCCCC---------HHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 345679999999 55542 3589999999999999999865 45899999999999999999999999
Q ss_pred EeCCeEEEEEeecCCc
Q 009565 492 WFGGRQIHASEDDGLV 507 (532)
Q Consensus 492 ~f~GR~I~V~~~dg~~ 507 (532)
.|+|+.|+|.++..+.
T Consensus 81 ~~~g~~l~V~~a~~~~ 96 (115)
T 2dgo_A 81 WLGGRQIRTNWATRKP 96 (115)
T ss_dssp EETTEECEEEESSCCC
T ss_pred EECCEEEEEEEccCCC
Confidence 9999999999998763
No 219
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.37 E-value=5.6e-13 Score=116.43 Aligned_cols=66 Identities=24% Similarity=0.487 Sum_probs=59.1
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
...++|||+|||+++|+++|+++|++||.|.. |.|+.+ |||||+|.+.++|..||..|||..|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--------~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~- 77 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCY--------ADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFR- 77 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEE--------EEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCC-
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEecC-------CEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 35688999999999999999999999999996 888765 89999999999999999999999997
Q ss_pred CC
Q 009565 366 DG 367 (532)
Q Consensus 366 G~ 367 (532)
|.
T Consensus 78 gr 79 (115)
T 3beg_B 78 SH 79 (115)
T ss_dssp CT
T ss_pred Cc
Confidence 53
No 220
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.5e-12 Score=110.73 Aligned_cols=80 Identities=16% Similarity=0.265 Sum_probs=70.4
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc--CCCcEEEEEeCCHHHHHHHHHHHCCcEeC
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN--HPQGVVLVRFKDRKDAQKCIELMNGRWFG 494 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~--~~kG~aFV~F~s~eeA~kAi~~LnGr~f~ 494 (532)
...++|+|.|| |..+. .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+||..|||..|+
T Consensus 13 ~~~~~l~V~nl--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2d9p_A 13 YQVVNLYVKNL--DDGID---------DERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 81 (103)
T ss_dssp SSCCCEEEECC--CTTCC---------HHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 35679999999 55543 3589999999999999999865 67899999999999999999999999999
Q ss_pred CeEEEEEeecCCc
Q 009565 495 GRQIHASEDDGLV 507 (532)
Q Consensus 495 GR~I~V~~~dg~~ 507 (532)
|++|.|.++..+.
T Consensus 82 g~~l~V~~a~~~~ 94 (103)
T 2d9p_A 82 TKPLYVALAQRKE 94 (103)
T ss_dssp SSBCEEEECSSCC
T ss_pred CcEEEEEEecccc
Confidence 9999999988764
No 221
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.8e-12 Score=108.44 Aligned_cols=79 Identities=16% Similarity=0.345 Sum_probs=69.1
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
..+++|+|.|| |..+. .++|+++|++||.|..|.|+.+ +++|||||+|.+.++|.+|+..|||..|
T Consensus 15 ~~~~~l~v~nl--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 83 (100)
T 2do4_A 15 LEKHKLFISGL--PFSCT---------KEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTI 83 (100)
T ss_dssp CCCSCEEEESC--CTTCC---------HHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEES
T ss_pred CCCCEEEEeCC--CCCCC---------HHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 34579999999 55543 3589999999999999999875 5679999999999999999999999999
Q ss_pred CCeEEEEEeecCC
Q 009565 494 GGRQIHASEDDGL 506 (532)
Q Consensus 494 ~GR~I~V~~~dg~ 506 (532)
+|++|+|.++..+
T Consensus 84 ~g~~l~v~~a~~~ 96 (100)
T 2do4_A 84 KENIIKVAISNSG 96 (100)
T ss_dssp SSCEEEEEECCCC
T ss_pred CCEEEEEEECCCC
Confidence 9999999998765
No 222
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.37 E-value=1.2e-12 Score=114.18 Aligned_cols=79 Identities=15% Similarity=0.170 Sum_probs=69.0
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccC-CeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCC
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIG-PVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGG 495 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG-~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G 495 (532)
....+|+|+|| |.... .++|+++|++|| .|..|.|+.+.++|||||+|.+.++|.+||..|||..|+|
T Consensus 26 ~~~~~l~VgnL--p~~~t---------e~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G 94 (111)
T 2jvr_A 26 AKRYRITMKNL--PEGCS---------WQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRG 94 (111)
T ss_dssp CCCEEEEEECS--SCCCC---------HHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CCCCEEEEECC--CCCCC---------HHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34579999999 55542 358999999999 9999999866789999999999999999999999999999
Q ss_pred eEEEEEeecCC
Q 009565 496 RQIHASEDDGL 506 (532)
Q Consensus 496 R~I~V~~~dg~ 506 (532)
|+|.|.++.+.
T Consensus 95 r~i~V~~a~~~ 105 (111)
T 2jvr_A 95 SVITVERDDNP 105 (111)
T ss_dssp EEEEEEESCC-
T ss_pred eEEEEEECCCC
Confidence 99999998764
No 223
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=3.2e-12 Score=109.93 Aligned_cols=79 Identities=15% Similarity=0.289 Sum_probs=69.4
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc-CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN-HPQGVVLVRFKDRKDAQKCIELMNGRWFGGR 496 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~-~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR 496 (532)
..++|||.|| |..++ .++|+++|++||.|..|.|..+ +++|||||+|.+.++|.+||+.|||..|+|+
T Consensus 21 ~~~~l~V~nL--p~~~t---------~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 89 (109)
T 1x4a_A 21 NDCRIYVGNL--PPDIR---------TKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY 89 (109)
T ss_dssp CSSEEEEESC--CTTCC---------HHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 4569999999 55542 3589999999999999999765 5689999999999999999999999999999
Q ss_pred EEEEEeecCCc
Q 009565 497 QIHASEDDGLV 507 (532)
Q Consensus 497 ~I~V~~~dg~~ 507 (532)
+|+|.++....
T Consensus 90 ~l~V~~a~~~~ 100 (109)
T 1x4a_A 90 RLRVEFPRSGR 100 (109)
T ss_dssp ECEEECCCCCC
T ss_pred EEEEEEcccCC
Confidence 99999988764
No 224
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=2.6e-12 Score=111.29 Aligned_cols=80 Identities=20% Similarity=0.251 Sum_probs=68.7
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHH---HHhhccCCeeEEEEecc-------CCCcEEEEEeCCHHHHHHHHH
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQ---EECVKIGPVDSVKVCEN-------HPQGVVLVRFKDRKDAQKCIE 486 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLr---e~fskfG~V~~V~l~~~-------~~kG~aFV~F~s~eeA~kAi~ 486 (532)
...++|||.|| |..+.+ ++|+ ++|++||.|..|.|+.+ +++|||||+|.+.++|.+||.
T Consensus 13 ~~~~~l~V~nL--p~~~~~---------~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~ 81 (111)
T 2cpi_A 13 VQKNLVFVVGL--SQRLAD---------PEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQ 81 (111)
T ss_dssp CCSSCEEEEEE--CTTTCC---------HHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHH
T ss_pred cCCCEEEEECC--CCCCCH---------HHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHH
Confidence 34569999999 555533 3777 99999999999999865 356999999999999999999
Q ss_pred HHCCcEeCCeEEEEEeecCCc
Q 009565 487 LMNGRWFGGRQIHASEDDGLV 507 (532)
Q Consensus 487 ~LnGr~f~GR~I~V~~~dg~~ 507 (532)
.|||..|+||+|+|.++..+.
T Consensus 82 ~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 82 CVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp HHTTEEETTEEEEEESCCCCS
T ss_pred HhCCCEECCEEEEEEeccccc
Confidence 999999999999999987763
No 225
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=2.7e-12 Score=108.31 Aligned_cols=79 Identities=16% Similarity=0.316 Sum_probs=68.8
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcE
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRW 492 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~ 492 (532)
...++|+|.|| |..+. .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+||. |||..
T Consensus 8 ~~~~~l~V~nl--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~ 75 (99)
T 2dgs_A 8 SKSNKIFVGGI--PHNCG---------ETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHD 75 (99)
T ss_dssp SSCCEEEEESC--CSSCC---------HHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCB
T ss_pred CCCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCE
Confidence 34579999999 55542 3489999999999999999864 478999999999999999998 99999
Q ss_pred eCCeEEEEEeecCCc
Q 009565 493 FGGRQIHASEDDGLV 507 (532)
Q Consensus 493 f~GR~I~V~~~dg~~ 507 (532)
|+|++|+|.++..+.
T Consensus 76 ~~g~~l~V~~a~~~~ 90 (99)
T 2dgs_A 76 IMGKKVEVKRAEPRD 90 (99)
T ss_dssp SSSCBCEEEECCCCC
T ss_pred ECCeEEEEEECCCCc
Confidence 999999999988764
No 226
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.2e-12 Score=113.26 Aligned_cols=78 Identities=12% Similarity=0.217 Sum_probs=67.4
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCC--cEeC
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNG--RWFG 494 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnG--r~f~ 494 (532)
...++|||+|| |...+ +++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+||..|++ ..|.
T Consensus 14 ~~~~~LfV~nL--p~~vt---------e~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~ 80 (105)
T 1sjq_A 14 VPSRVIHIRKL--PIDVT---------EGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLR 80 (105)
T ss_dssp CCCCEEEECSC--CTTSC---------HHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEET
T ss_pred CCCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 34679999999 55543 2489999999999999999975 69999999999999999998864 7999
Q ss_pred CeEEEEEeecCCc
Q 009565 495 GRQIHASEDDGLV 507 (532)
Q Consensus 495 GR~I~V~~~dg~~ 507 (532)
||+|.|.++..+.
T Consensus 81 Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 81 GQPIYIQFSNHKE 93 (105)
T ss_dssp TEECCBCCCSSSS
T ss_pred CEEEEEEEcCCCC
Confidence 9999999987763
No 227
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.5e-12 Score=109.92 Aligned_cols=71 Identities=20% Similarity=0.334 Sum_probs=62.0
Q ss_pred CcEEEEECCCCCCCHHH----HHHHHhccC-ccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCce
Q 009565 288 NTHVYVTGLPDDVTVEE----MVEVFSKCG-IIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTP 362 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeee----L~elFsk~G-~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~ 362 (532)
.|.|||+|||+++++++ |+++|++|| .|.. | +| |+|||.|.+.++|.+|++.|||..
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~--------V-------tg---G~AfV~F~~~esA~~A~~~l~G~~ 70 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLS--------I-------TG---CSAILRFINQDSAERAQKRMENED 70 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEE--------C-------CT---TCEEEEESSHHHHHHHHHHHTTCC
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEE--------E-------ec---CEEEEEECCHHHHHHHHHHhcCCc
Confidence 35599999999999988 558999995 9986 3 44 999999999999999999999999
Q ss_pred ecCCCCeeEEEeccccc
Q 009565 363 FRPDGKIPMSVTQAKFE 379 (532)
Q Consensus 363 l~~G~~~~I~V~~A~~~ 379 (532)
|. | ++|+|++|+..
T Consensus 71 l~-g--r~i~v~~A~~~ 84 (96)
T 2diu_A 71 VF-G--NRIIVSFTPKN 84 (96)
T ss_dssp SS-S--SCCEEESSCCS
T ss_pred cC-C--ceEEEEecCCC
Confidence 97 5 67999998844
No 228
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.5e-12 Score=110.78 Aligned_cols=82 Identities=23% Similarity=0.306 Sum_probs=70.7
Q ss_pred CCCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCC
Q 009565 415 KLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNG 490 (532)
Q Consensus 415 ~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnG 490 (532)
.....++|+|.|| |..+. .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+||..|||
T Consensus 9 ~~~~~~~l~V~nL--p~~~t---------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 77 (103)
T 2dnm_A 9 DVDGMITLKVDNL--TYRTS---------PDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDG 77 (103)
T ss_dssp CCSCCCEEEEESC--CTTCC---------HHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSS
T ss_pred CCCCCeEEEEeCC--CCCCC---------HHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCC
Confidence 3445679999999 55542 3589999999999999999864 5689999999999999999999999
Q ss_pred cEeCCeEEEEEeecCCc
Q 009565 491 RWFGGRQIHASEDDGLV 507 (532)
Q Consensus 491 r~f~GR~I~V~~~dg~~ 507 (532)
..|+|++|+|.++....
T Consensus 78 ~~~~g~~l~V~~a~~~~ 94 (103)
T 2dnm_A 78 AELDGRELRVQVARYGR 94 (103)
T ss_dssp CCBTTBCCEEEECSSCC
T ss_pred CEECCcEEEEEECCcCC
Confidence 99999999999987653
No 229
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.36 E-value=2.2e-12 Score=110.57 Aligned_cols=76 Identities=21% Similarity=0.256 Sum_probs=65.9
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcE--eCC
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRW--FGG 495 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~--f~G 495 (532)
.+++|+|+|| |...+ +++|+++|++||.|.+|.+++ ++|+|||+|.+.++|.+||..|||.. ++|
T Consensus 20 ps~~l~V~NL--p~~~t---------e~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~i~G 86 (100)
T 3r27_A 20 ASPVVHIRGL--IDGVV---------EADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIYIAG 86 (100)
T ss_dssp CCSEEEEESC--CTTCC---------HHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEEETT
T ss_pred CCcEEEEeCC--CCCCC---------HHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCceeCC
Confidence 4579999999 55542 358999999999999999986 46999999999999999999999874 899
Q ss_pred eEEEEEeecCC
Q 009565 496 RQIHASEDDGL 506 (532)
Q Consensus 496 R~I~V~~~dg~ 506 (532)
|+|.|.|...+
T Consensus 87 r~i~V~~S~~k 97 (100)
T 3r27_A 87 HPAFVNYSTSQ 97 (100)
T ss_dssp EEEEEEECSCS
T ss_pred cEEEEEecccc
Confidence 99999997654
No 230
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=3.2e-12 Score=107.72 Aligned_cols=75 Identities=28% Similarity=0.355 Sum_probs=66.5
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..+++|||+|| ++|+++|+++|++||.|.. |.|. .++|||||+|.+.++|.+||..|||..|.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~--------v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~- 75 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIID--------LSMD------PPRNCAFVTYEKMESADQAVAELNGTQVE- 75 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEE--------EEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEET-
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEE--------EEec------CCCCEEEEEECCHHHHHHHHHHhCCCeEC-
Confidence 35689999996 8999999999999999986 8873 56899999999999999999999999996
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| ++|.|..+...
T Consensus 76 g--~~l~v~~a~~~ 87 (97)
T 1x5p_A 76 S--VQLKVNIARKQ 87 (97)
T ss_dssp T--EEEEEECCSSC
T ss_pred C--eEEEEEECCCC
Confidence 5 67999988743
No 231
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.36 E-value=8.1e-13 Score=107.69 Aligned_cols=76 Identities=11% Similarity=0.211 Sum_probs=64.1
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc--CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCe-
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN--HPQGVVLVRFKDRKDAQKCIELMNGRWFGGR- 496 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~--~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR- 496 (532)
++|+|.|| |....+. ...++++|+++|++||.|.+|.+++. +++|||||+|.+.++|.+|+..|||..|+||
T Consensus 2 ~~l~V~nL--p~~~~~~---~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 76 (81)
T 2krb_A 2 SVIVVDNV--PQVGPDR---LEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 76 (81)
T ss_dssp CEEEEESC--CCCCTTT---HHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSS
T ss_pred CEEEEeCC--CCCcHHH---HHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCce
Confidence 58999999 5443211 12366899999999999999998843 6789999999999999999999999999999
Q ss_pred EEEE
Q 009565 497 QIHA 500 (532)
Q Consensus 497 ~I~V 500 (532)
+|+|
T Consensus 77 ~l~V 80 (81)
T 2krb_A 77 TFRV 80 (81)
T ss_dssp CCCC
T ss_pred eEEe
Confidence 8876
No 232
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=2e-12 Score=111.67 Aligned_cols=79 Identities=22% Similarity=0.397 Sum_probs=69.3
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc--CCCcEEEEEeCCHHHHHHHHHHHCCcEeC
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN--HPQGVVLVRFKDRKDAQKCIELMNGRWFG 494 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~--~~kG~aFV~F~s~eeA~kAi~~LnGr~f~ 494 (532)
...++|+|+|| |..+. .++|+++|++||.|..|.|..+ .++|||||+|.+.++|.+|+..|||..|+
T Consensus 27 ~~~~~l~V~nL--p~~~t---------e~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~ 95 (109)
T 2err_A 27 SQPKRLHVSNI--PFRFR---------DPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE 95 (109)
T ss_dssp TCCCEEEEESC--CTTCC---------HHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECC--CCcCC---------HHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 35679999999 55542 3589999999999999999865 46899999999999999999999999999
Q ss_pred CeEEEEEeecCC
Q 009565 495 GRQIHASEDDGL 506 (532)
Q Consensus 495 GR~I~V~~~dg~ 506 (532)
|++|+|.++..+
T Consensus 96 g~~l~V~~a~~~ 107 (109)
T 2err_A 96 GRKIEVNNATAR 107 (109)
T ss_dssp TEECEEEECCCS
T ss_pred CEEEEEEECCCC
Confidence 999999998775
No 233
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.36 E-value=3.1e-12 Score=109.41 Aligned_cols=78 Identities=21% Similarity=0.315 Sum_probs=68.0
Q ss_pred CCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcE
Q 009565 416 LTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRW 492 (532)
Q Consensus 416 ~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~ 492 (532)
....++|+|.|| |..+. .++|+++|++||.|.+|.|+.+ .++|+|||+|.+.++|.+||..|||..
T Consensus 26 ~~~~~~l~V~nl--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 94 (107)
T 3ulh_A 26 VETGGKLLVSNL--DFGVS---------DADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVP 94 (107)
T ss_dssp CCCSEEEEEESC--CTTCC---------HHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 345679999999 55542 3589999999999999999865 568999999999999999999999999
Q ss_pred eCCeEEEEEeec
Q 009565 493 FGGRQIHASEDD 504 (532)
Q Consensus 493 f~GR~I~V~~~d 504 (532)
|+|++|+|.++.
T Consensus 95 ~~g~~l~V~~a~ 106 (107)
T 3ulh_A 95 LDGRPMNIQLVT 106 (107)
T ss_dssp ETTEECEEEEEC
T ss_pred eCCcEEEEEEeC
Confidence 999999999875
No 234
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=2.3e-12 Score=109.84 Aligned_cols=80 Identities=23% Similarity=0.273 Sum_probs=69.9
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcE
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRW 492 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~ 492 (532)
...++|+|.|| |..+. .++|+++|++||.|..|.|+.+ +++|||||+|.+.++|.+||..|||..
T Consensus 13 ~~~~~l~V~nl--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 81 (105)
T 1x5u_A 13 NQDATVYVGGL--DEKVS---------EPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIK 81 (105)
T ss_dssp CTTTEEEEECC--CTTCC---------HHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCB
T ss_pred CCCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCe
Confidence 45679999999 55542 3489999999999999999865 578999999999999999999999999
Q ss_pred eCCeEEEEEeecCCc
Q 009565 493 FGGRQIHASEDDGLV 507 (532)
Q Consensus 493 f~GR~I~V~~~dg~~ 507 (532)
|+|++|+|.++..+.
T Consensus 82 ~~g~~l~v~~a~~~~ 96 (105)
T 1x5u_A 82 LYGKPIRVNKASAHN 96 (105)
T ss_dssp CSSCBCEEEETTTTS
T ss_pred ECCeEEEEEECCCCC
Confidence 999999999987763
No 235
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.7e-12 Score=108.71 Aligned_cols=79 Identities=18% Similarity=0.272 Sum_probs=69.1
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEE-EEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcE
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSV-KVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRW 492 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V-~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~ 492 (532)
..++|+|.|| |..+. .++|+++|++||.|..| .|+.+ .++|||||+|.+.++|.+|+..|||..
T Consensus 4 ~~~~l~V~nL--p~~~t---------~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 72 (96)
T 1x5t_A 4 GSSGIFIGNL--DPEID---------EKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY 72 (96)
T ss_dssp CCCEEEEECC--CTTCC---------HHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCE
T ss_pred CCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCE
Confidence 4579999999 55542 35899999999999999 88764 568999999999999999999999999
Q ss_pred eCCeEEEEEeecCCc
Q 009565 493 FGGRQIHASEDDGLV 507 (532)
Q Consensus 493 f~GR~I~V~~~dg~~ 507 (532)
|+|++|+|.++..+.
T Consensus 73 ~~g~~l~v~~a~~~~ 87 (96)
T 1x5t_A 73 LCNRPITVSYAFKKD 87 (96)
T ss_dssp ETTEECEEEESCCCC
T ss_pred ECCEEEEEEEecccC
Confidence 999999999987764
No 236
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.35 E-value=1.9e-12 Score=108.25 Aligned_cols=76 Identities=29% Similarity=0.470 Sum_probs=66.6
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcEeC
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFG 494 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~f~ 494 (532)
..++|+|.|| |..+. .++|+++|++||.|.+|.|+.+ +++|||||+|.+.++|.+|+..|||..|+
T Consensus 15 ~~~~l~v~nl--p~~~~---------~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (95)
T 2ywk_A 15 ADRTVFVGNL--EARVR---------EEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLY 83 (95)
T ss_dssp GGGEEEEECC--CTTCC---------HHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECC--CCCCC---------HHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4569999999 55542 3589999999999999999865 56899999999999999999999999999
Q ss_pred CeEEEEEeec
Q 009565 495 GRQIHASEDD 504 (532)
Q Consensus 495 GR~I~V~~~d 504 (532)
|++|+|.++.
T Consensus 84 g~~l~V~~a~ 93 (95)
T 2ywk_A 84 GRPINVSGPS 93 (95)
T ss_dssp TEECEEECCC
T ss_pred CCEEEEEEcC
Confidence 9999998864
No 237
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.35 E-value=2e-12 Score=107.48 Aligned_cols=79 Identities=19% Similarity=0.323 Sum_probs=69.1
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc--CCCcEEEEEeCCHHHHHHHHHHHCCcEeC
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN--HPQGVVLVRFKDRKDAQKCIELMNGRWFG 494 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~--~~kG~aFV~F~s~eeA~kAi~~LnGr~f~ 494 (532)
..+++|+|.|| |..+. .++|+++|++||.|..|.|..+ .++|||||+|.+.++|.+|+..|||..|+
T Consensus 6 ~~~~~l~V~nl--p~~~t---------~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 74 (92)
T 2dgv_A 6 SGACQIFVRNL--PFDFT---------WKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLS 74 (92)
T ss_dssp SSCCEEEECSC--CTTCC---------HHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBT
T ss_pred CCCcEEEEeCC--CCCCC---------HHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34579999999 55442 3589999999999999999864 56899999999999999999999999999
Q ss_pred CeEEEEEeecCC
Q 009565 495 GRQIHASEDDGL 506 (532)
Q Consensus 495 GR~I~V~~~dg~ 506 (532)
|++|+|.++...
T Consensus 75 g~~l~v~~a~~~ 86 (92)
T 2dgv_A 75 GREIDVRIDRNA 86 (92)
T ss_dssp TBCCCCEECSCC
T ss_pred CcEEEEEEcCCC
Confidence 999999998765
No 238
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=4.8e-12 Score=108.49 Aligned_cols=77 Identities=12% Similarity=0.176 Sum_probs=66.5
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHH--CCcEeCC
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELM--NGRWFGG 495 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~L--nGr~f~G 495 (532)
..++|||+|| |.... .++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|+..| ++..|.|
T Consensus 14 p~~~l~V~nL--p~~~t---------e~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G 80 (101)
T 2cq1_A 14 PSRVLHIRKL--PGEVT---------ETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLRN 80 (101)
T ss_dssp CCSEEEEESC--CTTCC---------HHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 4569999999 55442 3489999999999999999875 799999999999999999987 5788999
Q ss_pred eEEEEEeecCCc
Q 009565 496 RQIHASEDDGLV 507 (532)
Q Consensus 496 R~I~V~~~dg~~ 507 (532)
|+|.|.|+..+.
T Consensus 81 r~l~V~~a~~~~ 92 (101)
T 2cq1_A 81 QPIYIQYSNHKE 92 (101)
T ss_dssp EECEEEECSCSS
T ss_pred cEEEEEEcCccc
Confidence 999999988753
No 239
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=2.1e-12 Score=108.88 Aligned_cols=78 Identities=17% Similarity=0.348 Sum_probs=68.4
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCe
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGR 496 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR 496 (532)
..+++|+|.|| |..+. .++|+++|++||.|. +.++.++++|||||+|.+.++|.+|+..|||..|+|+
T Consensus 17 ~~~~~l~V~nL--~~~~t---------~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (97)
T 2e5j_A 17 PLAADVYVGNL--PRDAR---------VSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTD 84 (97)
T ss_dssp CCCCEEEEECC--CTTCC---------HHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCEEEEeCC--CCcCc---------HHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 34679999999 55543 358999999999997 7777778899999999999999999999999999999
Q ss_pred EEEEEeecCC
Q 009565 497 QIHASEDDGL 506 (532)
Q Consensus 497 ~I~V~~~dg~ 506 (532)
+|+|.++..+
T Consensus 85 ~l~V~~a~~~ 94 (97)
T 2e5j_A 85 TLRVALARQQ 94 (97)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEcCCC
Confidence 9999998775
No 240
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.35 E-value=8.7e-13 Score=111.85 Aligned_cols=75 Identities=15% Similarity=0.307 Sum_probs=64.5
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCC--eeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCc--
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGP--VDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGR-- 491 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~--V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr-- 491 (532)
.+|||+|| |...+ .++|+++|++||. |.+|+|+++ .++|||||+|.+.++|.+||+.|||.
T Consensus 10 ~tlfV~nL--~~~~t---------ee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~ 78 (95)
T 2lkz_A 10 DTIILRNI--APHTV---------VDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHP 78 (95)
T ss_dssp CEEEEESC--CTTCC---------HHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSS
T ss_pred CEEEEeCC--CCcCC---------HHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCC
Confidence 48999999 55543 3589999999995 678988765 67899999999999999999999996
Q ss_pred --EeCCeEEEEEeecC
Q 009565 492 --WFGGRQIHASEDDG 505 (532)
Q Consensus 492 --~f~GR~I~V~~~dg 505 (532)
.++||+|.|.|+..
T Consensus 79 ~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 79 PLKIDGKTIGVDFAKS 94 (95)
T ss_dssp CEEETTEEEEEEECCC
T ss_pred CceECCEEEEEEEccC
Confidence 69999999998753
No 241
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=2.1e-12 Score=108.75 Aligned_cols=79 Identities=15% Similarity=0.306 Sum_probs=68.7
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc-------CCCcEEEEEeCCHHHHHHHHHHHCC
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN-------HPQGVVLVRFKDRKDAQKCIELMNG 490 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~-------~~kG~aFV~F~s~eeA~kAi~~LnG 490 (532)
.+++|+|.|| |..+. .++|+++|++||.|..|.|..+ .++|||||+|.+.++|.+|+..|||
T Consensus 4 ~~~~l~V~nL--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g 72 (98)
T 2cpf_A 4 GSSGLFIKNL--NFSTT---------EETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQG 72 (98)
T ss_dssp CCCCEEEESC--CTTCC---------HHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTT
T ss_pred CCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCC
Confidence 3568999999 55543 3589999999999999999853 4579999999999999999999999
Q ss_pred cEeCCeEEEEEeecCCc
Q 009565 491 RWFGGRQIHASEDDGLV 507 (532)
Q Consensus 491 r~f~GR~I~V~~~dg~~ 507 (532)
..|+|++|+|.++..+.
T Consensus 73 ~~~~g~~l~V~~a~~~~ 89 (98)
T 2cpf_A 73 HTVDGHKLEVRISERAT 89 (98)
T ss_dssp CEETTEECEEECSSCSS
T ss_pred CeeCCeEEEEEEccCCC
Confidence 99999999999988764
No 242
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=5.4e-12 Score=105.15 Aligned_cols=79 Identities=13% Similarity=0.254 Sum_probs=68.3
Q ss_pred CCCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeC
Q 009565 415 KLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFG 494 (532)
Q Consensus 415 ~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~ 494 (532)
.....++|+|.|| |..+. .++|+++|++||.|..|.+.+ +||||+|.+.++|.+|+..|||..|.
T Consensus 6 ~~~~~~~l~V~nL--p~~~t---------~~~l~~~F~~~G~v~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~ 70 (92)
T 2dgt_A 6 SGKASTKLHVGNI--SPTCT---------NQELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTEFQ 70 (92)
T ss_dssp CCCSSEEEEEESC--CSSCC---------HHHHHHHHHTTSCCCEEEECS----SEEEEEESCHHHHHHHHHHHTTEEET
T ss_pred CCCCCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCeEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 3445679999999 55543 358999999999999999975 69999999999999999999999999
Q ss_pred CeEEEEEeecCCcc
Q 009565 495 GRQIHASEDDGLVN 508 (532)
Q Consensus 495 GR~I~V~~~dg~~~ 508 (532)
|++|+|.++..+..
T Consensus 71 g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 71 GKRMHVQLSTSRLR 84 (92)
T ss_dssp TEEEEEEESSCCCS
T ss_pred CcEEEEEEccCCCC
Confidence 99999999987643
No 243
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=3.9e-12 Score=108.65 Aligned_cols=82 Identities=18% Similarity=0.359 Sum_probs=70.9
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc-----CCCcEEEEEeCCHHHHHHHHHHH-CC
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN-----HPQGVVLVRFKDRKDAQKCIELM-NG 490 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~-----~~kG~aFV~F~s~eeA~kAi~~L-nG 490 (532)
...++|+|.|| |..+. .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+||..| ||
T Consensus 13 ~~~~~l~V~nl--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~ 81 (107)
T 2cph_A 13 QTTSKILVRNI--PFQAN---------QREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHS 81 (107)
T ss_dssp SCCCCEEEESC--CTTCC---------HHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTC
T ss_pred CCCCEEEEeCC--CCcCC---------HHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccC
Confidence 35679999999 55543 3589999999999999999765 46899999999999999999999 99
Q ss_pred cEeCCeEEEEEeecCCccc
Q 009565 491 RWFGGRQIHASEDDGLVNH 509 (532)
Q Consensus 491 r~f~GR~I~V~~~dg~~~~ 509 (532)
..|.|++|+|.++..+...
T Consensus 82 ~~~~g~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 82 THLYGRRLVLEWADSEVTV 100 (107)
T ss_dssp CBSSSCBCEEEECCCCCCC
T ss_pred CeECCCEEEEEeCCCCCCC
Confidence 9999999999999876544
No 244
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.35 E-value=2.7e-12 Score=109.56 Aligned_cols=83 Identities=16% Similarity=0.242 Sum_probs=71.0
Q ss_pred CCCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCC
Q 009565 415 KLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNG 490 (532)
Q Consensus 415 ~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnG 490 (532)
.....++|||.|| |..+. .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+||..|||
T Consensus 9 ~~~~~~~l~V~nl--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 77 (106)
T 2dgp_A 9 KDHDAIKLFIGQI--PRNLD---------EKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHE 77 (106)
T ss_dssp CCTTCEEEEEESC--CTTCC---------HHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 3445679999999 55543 3489999999999999999874 5789999999999999999999999
Q ss_pred cEe---CCeEEEEEeecCCcc
Q 009565 491 RWF---GGRQIHASEDDGLVN 508 (532)
Q Consensus 491 r~f---~GR~I~V~~~dg~~~ 508 (532)
..+ .|++|+|.++..+..
T Consensus 78 ~~~~~~~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 78 QKTLPGMNRPIQVKPADSESR 98 (106)
T ss_dssp TCCCTTCSSCCEEEECCCCSC
T ss_pred CcccCCCCceEEEEECCcccc
Confidence 988 899999999987643
No 245
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=2.3e-12 Score=113.01 Aligned_cols=77 Identities=19% Similarity=0.331 Sum_probs=65.3
Q ss_pred CCcEEEE--ECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCcee-
Q 009565 287 VNTHVYV--TGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPF- 363 (532)
Q Consensus 287 ~~~~VyV--~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l- 363 (532)
..++||| +|||+++|+++|+++|++||.|.. |.|+. .||||||+|.+.++|..|+..|||..|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~--------v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~ 89 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDA--------LLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVV 89 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEE--------EECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEE--------EEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEc
Confidence 4578999 669999999999999999999985 77653 279999999999999999999999987
Q ss_pred c-CCCCeeEEEeccc
Q 009565 364 R-PDGKIPMSVTQAK 377 (532)
Q Consensus 364 ~-~G~~~~I~V~~A~ 377 (532)
. .|..++|.|.++.
T Consensus 90 ~~lg~g~~l~v~~a~ 104 (114)
T 2cq2_A 90 DDLGQKITLYLNFVE 104 (114)
T ss_dssp CTTSCEEECEEEEES
T ss_pred cccCCCcEEEEEecc
Confidence 1 1234778888876
No 246
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.34 E-value=4e-12 Score=110.39 Aligned_cols=80 Identities=21% Similarity=0.292 Sum_probs=69.6
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
..++|||.|| |..+. .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+||..|||..|
T Consensus 24 ~~~~l~V~nL--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 92 (115)
T 2cpz_A 24 EGANLFIYHL--PQEFG---------DQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI 92 (115)
T ss_dssp TTCCEEEESC--CSSCC---------HHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEeCC--CCCCC---------HHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE
Confidence 3469999999 55543 2589999999999999999865 4679999999999999999999999999
Q ss_pred CCeEEEEEeecCCcc
Q 009565 494 GGRQIHASEDDGLVN 508 (532)
Q Consensus 494 ~GR~I~V~~~dg~~~ 508 (532)
+|++|+|.++..+..
T Consensus 93 ~g~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 93 GMKRLKVQLKRSKND 107 (115)
T ss_dssp TTEECEEECCCCSCC
T ss_pred CCEEEEEEEcCCCCc
Confidence 999999999887644
No 247
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=2.1e-12 Score=112.12 Aligned_cols=76 Identities=18% Similarity=0.185 Sum_probs=67.2
Q ss_pred CcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEE
Q 009565 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQI 498 (532)
Q Consensus 419 ~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I 498 (532)
.++|+|.|| |..+. .++|+++|++||.|.+|.|+. ++|||||+|.+.++|.+||..|||..|+||+|
T Consensus 10 ~~~l~V~nL--p~~~t---------e~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 76 (111)
T 1whx_A 10 KTVILAKNL--PAGTL---------AAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPL 76 (111)
T ss_dssp EEEEEEESC--CTTCC---------HHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCEEEEeCC--CCCCC---------HHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Confidence 469999999 55542 358999999999999999875 66999999999999999999999999999999
Q ss_pred EEEeecCCc
Q 009565 499 HASEDDGLV 507 (532)
Q Consensus 499 ~V~~~dg~~ 507 (532)
.|.++....
T Consensus 77 ~V~~a~~~~ 85 (111)
T 1whx_A 77 YLEWAPIGV 85 (111)
T ss_dssp EEEEEETTT
T ss_pred EEEECCCCc
Confidence 999987753
No 248
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=7.4e-12 Score=107.62 Aligned_cols=81 Identities=25% Similarity=0.366 Sum_probs=70.5
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHC---
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMN--- 489 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~Ln--- 489 (532)
...++|||.|| |..+. .++|+++|++||.|..|.|+.+ +++|||||+|.+.++|.+||..||
T Consensus 13 ~~~~~l~V~nL--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~ 81 (111)
T 1x4h_A 13 TEGKTVFIRNL--SFDSE---------EEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEA 81 (111)
T ss_dssp CCCCCEEEESC--CTTCC---------HHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTT
T ss_pred CCCCEEEEECC--CCCCC---------HHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhcccc
Confidence 34579999999 55543 3589999999999999999865 578999999999999999999999
Q ss_pred ---CcEeCCeEEEEEeecCCcc
Q 009565 490 ---GRWFGGRQIHASEDDGLVN 508 (532)
Q Consensus 490 ---Gr~f~GR~I~V~~~dg~~~ 508 (532)
|..|+|++|+|.++..+..
T Consensus 82 ~~~~~~~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 82 EGGGLKLDGRQLKVDLAVTRDE 103 (111)
T ss_dssp TTCCEESSSCEEEEECCCCCCC
T ss_pred ccCCcEEcCEEEEEEECCCCcc
Confidence 9999999999999887643
No 249
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.34 E-value=3.7e-12 Score=109.61 Aligned_cols=78 Identities=19% Similarity=0.249 Sum_probs=67.9
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
..++|+|.|| |..+. .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+||..|||..|
T Consensus 25 ~~~~l~V~nl--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 93 (110)
T 1oo0_B 25 EGWILFVTSI--HEEAQ---------EDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI 93 (110)
T ss_dssp TBEEEEEESC--CTTCC---------HHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4568999999 55542 2489999999999999999754 5689999999999999999999999999
Q ss_pred CCeEEEEEeecCC
Q 009565 494 GGRQIHASEDDGL 506 (532)
Q Consensus 494 ~GR~I~V~~~dg~ 506 (532)
+|++|.|.++..+
T Consensus 94 ~g~~l~V~~a~~~ 106 (110)
T 1oo0_B 94 MGQTIQVDWCFVK 106 (110)
T ss_dssp TTEECEEEESEES
T ss_pred CCcEEEEEEcccC
Confidence 9999999997654
No 250
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.33 E-value=4.5e-12 Score=108.01 Aligned_cols=81 Identities=17% Similarity=0.231 Sum_probs=70.0
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
..+++|||.|| |..+. .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+||..|||..|
T Consensus 13 ~~~~~l~v~nL--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 81 (105)
T 2dnh_A 13 GRDRKLFVGML--NKQQS---------EEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQT 81 (105)
T ss_dssp CCCCEEEEESC--CTTCC---------HHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCC
T ss_pred CCCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCcc
Confidence 34679999999 55543 3589999999999999999865 4579999999999999999999999999
Q ss_pred CC---eEEEEEeecCCcc
Q 009565 494 GG---RQIHASEDDGLVN 508 (532)
Q Consensus 494 ~G---R~I~V~~~dg~~~ 508 (532)
.| ++|+|.++..+..
T Consensus 82 ~gg~~~~l~V~~a~~~~~ 99 (105)
T 2dnh_A 82 MPGASSSLVVKFADTDKE 99 (105)
T ss_dssp CTTCSSCCEEEESCSSCC
T ss_pred CCCCCccEEEEECccCcc
Confidence 88 9999999987643
No 251
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=5.7e-12 Score=104.58 Aligned_cols=77 Identities=14% Similarity=0.220 Sum_probs=67.7
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCe
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGR 496 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR 496 (532)
...++|+|.|| |..+. .++|+++|++||.|..|.+. +|||||+|.+.++|.+|+..|||..|+|+
T Consensus 6 ~~~~~l~V~nl--p~~~t---------~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 70 (90)
T 2dnq_A 6 SGMVKLFIGNL--PREAT---------EQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGV 70 (90)
T ss_dssp SCCEEEEEESC--CSSCC---------HHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSC
T ss_pred CCCeEEEEeCC--CCCCC---------HHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 35679999999 55543 24899999999999999998 59999999999999999999999999999
Q ss_pred EEEEEeecCCcc
Q 009565 497 QIHASEDDGLVN 508 (532)
Q Consensus 497 ~I~V~~~dg~~~ 508 (532)
+|+|.++..+..
T Consensus 71 ~l~v~~a~~~~~ 82 (90)
T 2dnq_A 71 NINVEASKNKSK 82 (90)
T ss_dssp BCEEECSSCCCC
T ss_pred EEEEEECCCCCC
Confidence 999999887643
No 252
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=4e-12 Score=107.43 Aligned_cols=81 Identities=15% Similarity=0.239 Sum_probs=70.0
Q ss_pred CCCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeC
Q 009565 415 KLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFG 494 (532)
Q Consensus 415 ~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~ 494 (532)
.....++|+|.|| |..+. .++|+++|++||.|..|.+..+ +|||||+|.+.++|.+|+..|||..|+
T Consensus 11 ~~~~~~~l~V~nl--p~~~t---------~~~l~~~F~~~G~i~~v~~~~~--kg~afV~f~~~~~a~~a~~~l~g~~~~ 77 (99)
T 2cpj_A 11 TFTQRSRLFVGNL--PPDIT---------EEEMRKLFEKYGKAGEVFIHKD--KGFGFIRLETRTLAEIAKVELDNMPLR 77 (99)
T ss_dssp CCCCTTEEEEESC--CTTCC---------HHHHHHHTSTTCCCSEEEEETT--TTEEEEECSSSHHHHHHHHHHTTCCBT
T ss_pred cCCCCCEEEEeCC--CCCCC---------HHHHHHHHhhcCCeEEEEEecC--CCEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 3445679999999 55543 3489999999999999999864 699999999999999999999999999
Q ss_pred CeEEEEEeecCCcc
Q 009565 495 GRQIHASEDDGLVN 508 (532)
Q Consensus 495 GR~I~V~~~dg~~~ 508 (532)
|++|+|.++..+..
T Consensus 78 g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 78 GKQLRVRFACHSAS 91 (99)
T ss_dssp TBCCEEEESSCCSC
T ss_pred CceEEEEEcCCCCC
Confidence 99999999887644
No 253
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.33 E-value=3e-12 Score=122.14 Aligned_cols=78 Identities=18% Similarity=0.296 Sum_probs=68.6
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+|||+++|+++|+++|++||.|.. |+|++++ +|.++|||||+|.+.++|..||..++ ..|. |
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--------v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~-G 176 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLN--------IQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYK-E 176 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEE--------EEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEET-T
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEE--------EEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeEC-C
Confidence 3588999999999999999999999999997 9999985 69999999999999999999997665 4775 5
Q ss_pred CCeeEEEeccc
Q 009565 367 GKIPMSVTQAK 377 (532)
Q Consensus 367 ~~~~I~V~~A~ 377 (532)
++|.|..+.
T Consensus 177 --r~l~V~~~~ 185 (193)
T 2voo_A 177 --TDLLILFKD 185 (193)
T ss_dssp --EECEEEETT
T ss_pred --EEEEEEEhH
Confidence 567887654
No 254
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.33 E-value=6.8e-12 Score=106.16 Aligned_cols=75 Identities=9% Similarity=0.208 Sum_probs=65.9
Q ss_pred CCCcEEEEecccCCc-ccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCC
Q 009565 417 TIPATVILRFMFTPA-EMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGG 495 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~-~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G 495 (532)
...++|||+|| |. .+. .++|+++|++||.|..|.+. +|||||+|.+.++|.+|+..|||..|+|
T Consensus 20 ~~~~~l~V~nL--p~~~~t---------~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (97)
T 2xnq_A 20 HMKSRLFIGNL--PLKNVS---------KEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFG 84 (97)
T ss_dssp CTTCEEEEESC--CSSCCC---------HHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETT
T ss_pred CCCCEEEEeCC--CcccCC---------HHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34679999999 54 442 24899999999999999984 6999999999999999999999999999
Q ss_pred eEEEEEeecCC
Q 009565 496 RQIHASEDDGL 506 (532)
Q Consensus 496 R~I~V~~~dg~ 506 (532)
++|+|.++.++
T Consensus 85 ~~l~V~~a~~~ 95 (97)
T 2xnq_A 85 KKLILEVSSSN 95 (97)
T ss_dssp EECEEEECCCC
T ss_pred EEEEEEecCCC
Confidence 99999998765
No 255
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=4.2e-12 Score=106.84 Aligned_cols=77 Identities=12% Similarity=0.184 Sum_probs=67.7
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeC--
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFG-- 494 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~-- 494 (532)
...++|+|.|| |..+. .++|+++|++||.|..|.+..+ +|||||+|.+.++|.+|+..|||..|.
T Consensus 15 ~~~~~l~V~nl--p~~~t---------~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 81 (97)
T 1why_A 15 NPTTRLWVGGL--GPNTS---------LAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGP 81 (97)
T ss_dssp CCCSCEEEECC--CSSCC---------HHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSS
T ss_pred CCCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 34579999999 55543 2589999999999999999875 699999999999999999999999999
Q ss_pred CeEEEEEeecCC
Q 009565 495 GRQIHASEDDGL 506 (532)
Q Consensus 495 GR~I~V~~~dg~ 506 (532)
|++|+|.++..+
T Consensus 82 g~~l~V~~a~~~ 93 (97)
T 1why_A 82 DRRLRVDFAKSG 93 (97)
T ss_dssp SCBCEEEECCCC
T ss_pred CcEEEEEECCCC
Confidence 999999998765
No 256
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=3e-12 Score=109.26 Aligned_cols=78 Identities=19% Similarity=0.234 Sum_probs=67.7
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
..++|+|.|| |..+. .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+|+..|||..|
T Consensus 22 ~~~~l~V~nl--p~~~t---------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 90 (106)
T 1p27_B 22 EGWILFVTGV--HEEAT---------EEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL 90 (106)
T ss_dssp TBEEEEEECC--CTTCC---------HHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS
T ss_pred CCCEEEEeCC--CCCCC---------HHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE
Confidence 4568999999 55542 3489999999999999999865 4589999999999999999999999999
Q ss_pred CCeEEEEEeecCC
Q 009565 494 GGRQIHASEDDGL 506 (532)
Q Consensus 494 ~GR~I~V~~~dg~ 506 (532)
+|++|+|.++..+
T Consensus 91 ~g~~l~V~~a~~~ 103 (106)
T 1p27_B 91 MGQPISVDWCFVR 103 (106)
T ss_dssp SSSBCEEEESEES
T ss_pred CCcEEEEEeecCC
Confidence 9999999987654
No 257
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.33 E-value=4.1e-12 Score=107.35 Aligned_cols=78 Identities=19% Similarity=0.329 Sum_probs=67.2
Q ss_pred CCCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeE--------EEEecc----CCCcEEEEEeCCHHHHH
Q 009565 415 KLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDS--------VKVCEN----HPQGVVLVRFKDRKDAQ 482 (532)
Q Consensus 415 ~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~--------V~l~~~----~~kG~aFV~F~s~eeA~ 482 (532)
.+...++|+|+|| |.... .++|+++|++||.|.. |.|+.+ +++|||||+|.+.++|.
T Consensus 9 ~~~~~~~l~V~nL--p~~~t---------~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~ 77 (99)
T 2la6_A 9 SHSDNNTIFVQGL--GENVT---------IESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAK 77 (99)
T ss_dssp SCCCCSEEEEECC--CSSCC---------HHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHH
T ss_pred CCCCCCEEEEeCC--CCCCC---------HHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHH
Confidence 3345679999999 55543 3589999999999999 888765 46899999999999999
Q ss_pred HHHHHHCCcEeCCeEEEEEee
Q 009565 483 KCIELMNGRWFGGRQIHASED 503 (532)
Q Consensus 483 kAi~~LnGr~f~GR~I~V~~~ 503 (532)
+|++.|||..|+||+|+|.++
T Consensus 78 ~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 78 AAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp HHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHhCCCEeCCcEEEEEec
Confidence 999999999999999999875
No 258
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.33 E-value=9.5e-12 Score=109.53 Aligned_cols=83 Identities=20% Similarity=0.289 Sum_probs=71.7
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
...++|+|.|| |..+. .++|+++|++||.|.+|.|+.+ +++|||||+|.+.++|.+|+..|||..|
T Consensus 33 ~~~~~l~V~nl--p~~~t---------~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 101 (124)
T 2kt5_A 33 ETGAKLLVSNL--DFGVS---------DADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL 101 (124)
T ss_dssp SSCEEEEEESC--CSSCC---------HHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEES
T ss_pred CCCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEE
Confidence 44579999999 55542 3589999999999999999875 4789999999999999999999999999
Q ss_pred CCeEEEEEeecCCcccc
Q 009565 494 GGRQIHASEDDGLVNHA 510 (532)
Q Consensus 494 ~GR~I~V~~~dg~~~~~ 510 (532)
+|++|+|.++.....+.
T Consensus 102 ~g~~l~V~~a~~~~~~~ 118 (124)
T 2kt5_A 102 DGRPMDIQLVASQIDLE 118 (124)
T ss_dssp SSCEEEEEEECCTTCCC
T ss_pred CCcEEEEEEeCCCCCCC
Confidence 99999999998865443
No 259
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=6e-12 Score=108.28 Aligned_cols=78 Identities=17% Similarity=0.246 Sum_probs=68.8
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeE
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQ 497 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~ 497 (532)
..++|||.|| |..+. .++|+.+|++||.|..|.|+.+ +|||||+|.+.++|.+||..|||..|+|++
T Consensus 24 ~~~~l~V~nl--~~~~t---------~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 90 (109)
T 1x4g_A 24 KNCTVYCGGI--ASGLT---------DQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEGHV 90 (109)
T ss_dssp SCCEEEEECC--SSCCC---------HHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCcEEEEeCC--CCCCC---------HHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 3569999999 55542 3589999999999999999876 699999999999999999999999999999
Q ss_pred EEEEeecCCcc
Q 009565 498 IHASEDDGLVN 508 (532)
Q Consensus 498 I~V~~~dg~~~ 508 (532)
|+|.++..+..
T Consensus 91 l~v~~a~~~~~ 101 (109)
T 1x4g_A 91 VKCYWGKESPD 101 (109)
T ss_dssp CEEECCCCCCS
T ss_pred EEEEecCCCCC
Confidence 99999887643
No 260
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=3.2e-12 Score=109.88 Aligned_cols=76 Identities=9% Similarity=0.126 Sum_probs=66.1
Q ss_pred CCcEEEEecccCCc-ccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCc--EeC
Q 009565 418 IPATVILRFMFTPA-EMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGR--WFG 494 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~-~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr--~f~ 494 (532)
..++|||+|| |. .. ..++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+||..|||. .|.
T Consensus 14 p~~~l~V~nL--p~~~~---------te~dL~~lF~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 80 (102)
T 1x4d_A 14 TRRVVHIMDF--QRGKN---------LRYQLLQLVEPFGVISNHLILNK--INEAFIEMATTEDAQAAVDYYTTTPALVF 80 (102)
T ss_dssp CCCEEEEESC--CCSSS---------HHHHHHTTTGGGSCEEEEEECSS--SSCEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCEEEEeCC--CCCcC---------CHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHHcCCCceEC
Confidence 4679999999 55 44 34589999999999999999875 499999999999999999999864 599
Q ss_pred CeEEEEEeecCC
Q 009565 495 GRQIHASEDDGL 506 (532)
Q Consensus 495 GR~I~V~~~dg~ 506 (532)
||+|.|.++...
T Consensus 81 Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 81 GKPVRVHLSQKY 92 (102)
T ss_dssp TEECEEEEECCC
T ss_pred CcEEEEEECCCC
Confidence 999999998864
No 261
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.32 E-value=3.9e-12 Score=117.85 Aligned_cols=139 Identities=14% Similarity=0.104 Sum_probs=69.5
Q ss_pred EEecCHHHHHHHHHHhCCceecCCCCeeEEEecccccccchhhhhhhhchHHHHhHHHHHhhhhcCCCCCCCCCCCCcEE
Q 009565 343 VTYLKEPSVALATQLLDGTPFRPDGKIPMSVTQAKFEQKGERFIAKQVDSKKKKKLKKVEEKMLGWGGRDDAKLTIPATV 422 (532)
Q Consensus 343 V~F~~~esA~~Al~~LnG~~l~~G~~~~I~V~~A~~~~kg~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~~~~~~~v 422 (532)
.+|.+.+++..|+..|++......+ +.+.+..+.-... .....+...-..-...........++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kg-r~~~~~~~~~~~~--------------~~~~~~~~s~~~~~~~~~~~~~~~~~l 75 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKG-RGFGSDSNTREAI--------------HSYERVRNEDDDELEPGPQRSVEGWIL 75 (165)
T ss_dssp ----------------------------------------------------------------------CCCCC-CEEE
T ss_pred hhhhccccccccchhhccccccccC-CCCCCCccccccc--------------cCccccccCCCCCCCCCCCCCCCCCEE
Confidence 7889999999999999987664111 1122211110000 000000000000000011222345689
Q ss_pred EEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEE
Q 009565 423 ILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQI 498 (532)
Q Consensus 423 ~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I 498 (532)
||.|| |..+. .++|+.+|++||.|..|.|+.+ .++|||||+|.+.++|.+||..|||..|.|++|
T Consensus 76 ~V~nL--p~~~t---------~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 76 FVTSI--HEEAQ---------EDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp EEESC--CTTCC---------HHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred EEeCC--CCCCC---------HHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 99999 55542 3589999999999999999865 468999999999999999999999999999999
Q ss_pred EEEeecCCc
Q 009565 499 HASEDDGLV 507 (532)
Q Consensus 499 ~V~~~dg~~ 507 (532)
.|.++..+.
T Consensus 145 ~V~~a~~~~ 153 (165)
T 1rk8_A 145 QVDWCFVKG 153 (165)
T ss_dssp EEEESEECC
T ss_pred EEEEecCCC
Confidence 999987653
No 262
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=4.3e-12 Score=109.31 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=66.3
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCc--EeCC
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGR--WFGG 495 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr--~f~G 495 (532)
..++|||+|| |.... +++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|+..|||. .|.|
T Consensus 14 p~~~l~V~nL--p~~~t---------e~~L~~~F~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G 80 (104)
T 1wex_A 14 VSPVVHVRGL--CESVV---------EADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVPVYIAG 80 (104)
T ss_dssp CCSEEEEESC--CSSCC---------HHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCBSSS
T ss_pred CCCEEEEeCC--CCCCC---------HHHHHHHHHhCCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 4579999999 55543 3489999999999999999874 699999999999999999999764 5999
Q ss_pred eEEEEEeecCCc
Q 009565 496 RQIHASEDDGLV 507 (532)
Q Consensus 496 R~I~V~~~dg~~ 507 (532)
|+|.|.|+..+.
T Consensus 81 r~l~V~~a~~~~ 92 (104)
T 1wex_A 81 QQAFFNYSTSKR 92 (104)
T ss_dssp SBCEEEECSSSS
T ss_pred EEEEEEEccCcc
Confidence 999999988764
No 263
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.32 E-value=3.7e-12 Score=107.90 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=65.7
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeE
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQ 497 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~ 497 (532)
..++|+|.|| |..+. .++|+++|++||.|.+|.+. +++|||||+|.+.++|.+|+..|||..|+|++
T Consensus 26 ~~~~l~V~nl--p~~~~---------~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 92 (101)
T 2la4_A 26 RVTTAYIGNI--PHFAT---------EADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQGRN 92 (101)
T ss_dssp SCCEEEEESC--CTTCC---------HHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEcCC--CcccC---------HHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 3579999999 55442 35899999999999999998 46799999999999999999999999999999
Q ss_pred EEEEeecC
Q 009565 498 IHASEDDG 505 (532)
Q Consensus 498 I~V~~~dg 505 (532)
|+|.++..
T Consensus 93 l~V~~a~~ 100 (101)
T 2la4_A 93 LRTGWGKE 100 (101)
T ss_dssp CCCCBCCC
T ss_pred EEEEeccC
Confidence 99987654
No 264
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.32 E-value=7.7e-12 Score=107.93 Aligned_cols=80 Identities=14% Similarity=0.067 Sum_probs=69.8
Q ss_pred CCcEEEEECCCC-----CCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCC-CCccccEEEEecCHHHHHHHHHHhCC
Q 009565 287 VNTHVYVTGLPD-----DVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKET-GMKKGDALVTYLKEPSVALATQLLDG 360 (532)
Q Consensus 287 ~~~~VyV~nLP~-----~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~t-G~~kG~aFV~F~~~esA~~Al~~LnG 360 (532)
..+.|+|+||.. +-++++|+++|++||.|.+ |.|++++.+ +.++|||||+|.+.++|.+|+..|||
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~--------v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG 78 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGK--------CVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNG 78 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEE--------EEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEE--------EEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCC
Confidence 348899999963 2478999999999999997 999998654 68999999999999999999999999
Q ss_pred ceecCCCCeeEEEeccc
Q 009565 361 TPFRPDGKIPMSVTQAK 377 (532)
Q Consensus 361 ~~l~~G~~~~I~V~~A~ 377 (532)
..|. | ++|.|..+.
T Consensus 79 ~~~~-G--r~i~v~~a~ 92 (105)
T 2pe8_A 79 RYFG-G--RVVKACFYN 92 (105)
T ss_dssp CEET-T--EECEEEECC
T ss_pred CEEC-C--cEEEEEEcC
Confidence 9996 5 779998886
No 265
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=8.1e-12 Score=108.00 Aligned_cols=78 Identities=21% Similarity=0.323 Sum_probs=68.1
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcEeC
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFG 494 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~f~ 494 (532)
..++|+|.|| |..+. .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+||..|||..|+
T Consensus 14 ~~~~l~V~nl--p~~~~---------~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 82 (114)
T 2do0_A 14 LGSTVFVANL--DYKVG---------WKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF 82 (114)
T ss_dssp CCSCEEEESC--CTTCC---------HHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 4569999999 55542 3589999999999999999865 45799999999999999999999999999
Q ss_pred CeEEEEEeecCC
Q 009565 495 GRQIHASEDDGL 506 (532)
Q Consensus 495 GR~I~V~~~dg~ 506 (532)
|+.|+|.++...
T Consensus 83 g~~l~v~~a~~~ 94 (114)
T 2do0_A 83 DRPMHVKMDERA 94 (114)
T ss_dssp TEECEEEECSCC
T ss_pred CCEEEEEEcccC
Confidence 999999998753
No 266
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=4.6e-12 Score=111.95 Aligned_cols=78 Identities=12% Similarity=0.217 Sum_probs=67.4
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCC--cEeC
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNG--RWFG 494 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnG--r~f~ 494 (532)
...++|||+|| |...+ +++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+||..||+ ..|.
T Consensus 29 ~ps~~LfVgNL--p~~vt---------e~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~ 95 (119)
T 2ad9_A 29 VPSRVIHIRKL--PIDVT---------EGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLR 95 (119)
T ss_dssp SCCSEEEEESC--CTTCC---------HHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBT
T ss_pred CCCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 34579999999 55542 3589999999999999999875 69999999999999999999985 6899
Q ss_pred CeEEEEEeecCCc
Q 009565 495 GRQIHASEDDGLV 507 (532)
Q Consensus 495 GR~I~V~~~dg~~ 507 (532)
||+|.|.|+..+.
T Consensus 96 Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 96 GQPIYIQFSNHKE 108 (119)
T ss_dssp TBCCEEEECSSSS
T ss_pred CeEEEEEEccCCC
Confidence 9999999987763
No 267
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.31 E-value=1e-11 Score=106.89 Aligned_cols=77 Identities=17% Similarity=0.226 Sum_probs=68.2
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCC-
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGG- 495 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G- 495 (532)
...++|||.|| |..+. .++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||..|||..|.|
T Consensus 13 ~~~~~l~V~nL--p~~~t---------~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 78 (108)
T 1x4c_A 13 RSENRVVVSGL--PPSGS---------WQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSH 78 (108)
T ss_dssp SCCCEEEEESC--CSSCC---------HHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECT
T ss_pred CCCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCC
Confidence 45679999999 55542 3589999999999999999876 999999999999999999999999999
Q ss_pred ----eEEEEEeecCCc
Q 009565 496 ----RQIHASEDDGLV 507 (532)
Q Consensus 496 ----R~I~V~~~dg~~ 507 (532)
+.|.|.++..+.
T Consensus 79 ~~~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 79 EGETAYIRVKVDGPRS 94 (108)
T ss_dssp TSCEEEEEEEESSCCS
T ss_pred cCcceEEEEEeCCCCC
Confidence 999999988753
No 268
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.31 E-value=3.8e-12 Score=106.80 Aligned_cols=83 Identities=16% Similarity=0.239 Sum_probs=68.7
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc-CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN-HPQGVVLVRFKDRKDAQKCIELMNGRWFGGR 496 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~-~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR 496 (532)
..++|+|+|| |..+.. .++++.|.++|++||.|..|.+... .++|||||+|.+.++|.+|+..|||..|+|+
T Consensus 7 ~~~~l~V~nL--p~~~~~-----~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 7 PNHTIYINNL--NEKIKK-----DELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp CCSEEEEESC--CTTSCH-----HHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCC--CCCCCH-----HHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 4569999999 555432 2234455599999999999998743 5679999999999999999999999999999
Q ss_pred EEEEEeecCCc
Q 009565 497 QIHASEDDGLV 507 (532)
Q Consensus 497 ~I~V~~~dg~~ 507 (532)
+|+|.++....
T Consensus 80 ~l~v~~a~~~~ 90 (97)
T 1nu4_A 80 PMRIQYAKTDS 90 (97)
T ss_dssp ECEEEECSSCC
T ss_pred EEEEEEccCCC
Confidence 99999987753
No 269
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=3e-12 Score=105.80 Aligned_cols=75 Identities=23% Similarity=0.270 Sum_probs=62.3
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
.+++|||+|||+++|+++|+++|++||.|.. |+|+++ ++|||||+|.+.++|++ +++..+. +
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~-----~~g~afV~f~~~~~a~~----~~~~~~~-~ 65 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMD--------VFIPKP-----FRAFAFVTFADDQIAQS----LCGEDLI-I 65 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCE--------EECCSS-----CCSCCEEECSCHHHHHH----TTTCEEE-E
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeE--------EEEecC-----CCCEEEEEECCHHHHHH----HhcCCce-e
Confidence 4689999999999999999999999999996 888764 78999999999999975 4555553 2
Q ss_pred CCeeEEEeccccc
Q 009565 367 GKIPMSVTQAKFE 379 (532)
Q Consensus 367 ~~~~I~V~~A~~~ 379 (532)
..++|.|.++...
T Consensus 66 ~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 66 KGISVHISNAEPK 78 (88)
T ss_dssp TTEEEEEECCCCC
T ss_pred CCEEEEEEecCCC
Confidence 3377899888744
No 270
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.31 E-value=3.1e-12 Score=107.68 Aligned_cols=79 Identities=18% Similarity=0.270 Sum_probs=67.0
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcE
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRW 492 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~ 492 (532)
..+++|+|.|| |..+. .++|+++|++||.|..+.++.+ +++|||||+|.+.++|.+||..|||..
T Consensus 13 ~~~~~l~v~nL--p~~~t---------~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~ 81 (98)
T 2cqp_A 13 PGPTIIKVQNM--PFTVS---------IDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRP 81 (98)
T ss_dssp CSSEEEEEESC--CTTCC---------HHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCE
T ss_pred CCCCEEEEeCC--CCCCC---------HHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCe
Confidence 34579999999 55542 3589999999999987766543 568999999999999999999999999
Q ss_pred eCCeEEEEEeecCC
Q 009565 493 FGGRQIHASEDDGL 506 (532)
Q Consensus 493 f~GR~I~V~~~dg~ 506 (532)
|+||+|+|.+..+.
T Consensus 82 ~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 82 IGSRKVKLVLGSGP 95 (98)
T ss_dssp ETTEECEEEESSCS
T ss_pred eCCeEEEEEEcCCC
Confidence 99999999997754
No 271
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.30 E-value=5.1e-12 Score=110.54 Aligned_cols=79 Identities=20% Similarity=0.371 Sum_probs=69.4
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcEeC
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFG 494 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~f~ 494 (532)
.+++|+|.|| |..+. .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+||..|||..|+
T Consensus 6 ~~~~l~V~nL--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~ 74 (116)
T 2fy1_A 6 HPGKLFIGGL--NRETN---------EKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH 74 (116)
T ss_dssp SCCEEEEECC--TTTCC---------HHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCS
T ss_pred CCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3579999999 55442 3589999999999999999875 57899999999999999999999999999
Q ss_pred CeEEEEEeecCCc
Q 009565 495 GRQIHASEDDGLV 507 (532)
Q Consensus 495 GR~I~V~~~dg~~ 507 (532)
|++|.|.++....
T Consensus 75 g~~l~V~~a~~~~ 87 (116)
T 2fy1_A 75 GKAIKVEQAKKPS 87 (116)
T ss_dssp SSBCEEEECCCSS
T ss_pred CEEEEEEECCCCC
Confidence 9999999998754
No 272
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=7.6e-12 Score=108.11 Aligned_cols=80 Identities=16% Similarity=0.290 Sum_probs=69.2
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCee--------EEEEecc----CCCcEEEEEeCCHHHHHHH
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVD--------SVKVCEN----HPQGVVLVRFKDRKDAQKC 484 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~--------~V~l~~~----~~kG~aFV~F~s~eeA~kA 484 (532)
...++|||.|| |..+. .++|+++|++||.|. .|.|+.+ +++|||||+|.+.++|.+|
T Consensus 13 ~~~~~l~V~nL--p~~~t---------~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 81 (113)
T 2cpe_A 13 SDNSAIYVQGL--NDSVT---------LDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAA 81 (113)
T ss_dssp CCCCEEEEECC--CTTCC---------HHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHH
T ss_pred CCCCEEEEcCC--CCCCC---------HHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHH
Confidence 35679999999 55442 358999999999999 6888765 5689999999999999999
Q ss_pred HHHHCCcEeCCeEEEEEeecCCc
Q 009565 485 IELMNGRWFGGRQIHASEDDGLV 507 (532)
Q Consensus 485 i~~LnGr~f~GR~I~V~~~dg~~ 507 (532)
|..|||..|.|++|+|.++..+.
T Consensus 82 i~~l~g~~~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 82 VEWFDGKDFQGSKLKVSLARKKP 104 (113)
T ss_dssp HHHHTTCEETTEECEEECSSCCC
T ss_pred HHHcCCCccCCCEEEEEECCCCC
Confidence 99999999999999999988764
No 273
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.30 E-value=1.2e-11 Score=105.21 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=67.1
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCe
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGR 496 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR 496 (532)
...++|+|.|| |..++ .++|+++|++||.|..|.|++ |||||+|.+.++|.+||..|||..|.|+
T Consensus 9 ~~~~~l~V~nl--~~~~t---------~~~l~~~F~~~G~i~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g~ 73 (103)
T 2dgu_A 9 AKVKVLFVRNL--ANTVT---------EEILEKAFSQFGKLERVKKLK----DYAFIHFDERDGAVKAMEEMNGKDLEGE 73 (103)
T ss_dssp CCCCCEEEECC--CTTCC---------HHHHHHHHHHHSCEEEEEECS----SCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCEEEEEEEC----CEEEEEeCCHHHHHHHHHHHCCCccCCC
Confidence 34579999999 55542 358999999999999999874 7999999999999999999999999999
Q ss_pred EEEEEeecCCcc
Q 009565 497 QIHASEDDGLVN 508 (532)
Q Consensus 497 ~I~V~~~dg~~~ 508 (532)
+|.|.++..+..
T Consensus 74 ~l~v~~a~~~~~ 85 (103)
T 2dgu_A 74 NIEIVFAKPPDQ 85 (103)
T ss_dssp EEEEEECCCCCC
T ss_pred EEEEEEcCCCcc
Confidence 999999987643
No 274
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=8.6e-12 Score=102.01 Aligned_cols=74 Identities=18% Similarity=0.308 Sum_probs=64.9
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHH-CCcEeCC
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELM-NGRWFGG 495 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~L-nGr~f~G 495 (532)
...++|+|.|| |..+. .++|+++|++||.|..|.+.++ +|+|||+|.+.++|.+|+..| ||..|+|
T Consensus 10 ~~~~~l~V~~l--~~~~t---------~~~l~~~f~~~G~i~~~~~~~~--kg~afV~f~~~~~A~~a~~~l~~~~~~~g 76 (85)
T 2ytc_A 10 KTITTLYVGGL--GDTIT---------ETDLRNHFYQFGEIRTITVVQR--QQCAFIQFATRQAAEVAAEKSFNKLIVNG 76 (85)
T ss_dssp SSCCCEEEECC--TTTSC---------HHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHTTTTTCEETT
T ss_pred CCccEEEEcCC--CCCCC---------HHHHHHHHHhCCCEeEEEEECC--CCEEEEEECCHHHHHHHHHHhcCCeeECC
Confidence 34579999999 55542 3589999999999999999874 699999999999999999999 9999999
Q ss_pred eEEEEEee
Q 009565 496 RQIHASED 503 (532)
Q Consensus 496 R~I~V~~~ 503 (532)
++|+|.++
T Consensus 77 ~~l~v~~a 84 (85)
T 2ytc_A 77 RRLNVKWG 84 (85)
T ss_dssp EECCEEEC
T ss_pred CEEEEEec
Confidence 99999875
No 275
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.30 E-value=6.7e-12 Score=103.45 Aligned_cols=74 Identities=18% Similarity=0.389 Sum_probs=65.4
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCC
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGG 495 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G 495 (532)
++|+|.|| |.... .++|+++|++||.|.+|.++.+ +++|+|||+|.+.++|.+|+ .|||..|+|
T Consensus 7 ~~l~V~nl--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g 74 (89)
T 3ucg_A 7 RSIYVGNV--DYGAT---------AEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG 74 (89)
T ss_dssp TEEEEESC--CTTCC---------HHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT
T ss_pred CEEEEeCC--CCCCC---------HHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC
Confidence 58999999 55542 3589999999999999999865 56899999999999999999 999999999
Q ss_pred eEEEEEeecC
Q 009565 496 RQIHASEDDG 505 (532)
Q Consensus 496 R~I~V~~~dg 505 (532)
++|+|.++..
T Consensus 75 ~~l~V~~a~~ 84 (89)
T 3ucg_A 75 RQIKVIPKRT 84 (89)
T ss_dssp EECEEEETTT
T ss_pred cEEEEEEccC
Confidence 9999998765
No 276
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=9.2e-12 Score=103.31 Aligned_cols=76 Identities=16% Similarity=0.206 Sum_probs=66.8
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCe
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGR 496 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR 496 (532)
...++|+|.|| |..+. .++|+++|++||.|..|.+.+ |||||+|.+.++|.+|+..|||..|+|+
T Consensus 7 ~~~~~l~V~nl--p~~~t---------~~~l~~~F~~~G~v~~~~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g~ 71 (90)
T 2dnp_A 7 GNTWKIFVGNV--SAACT---------SQELRSLFERRGRVIECDVVK----DYAFVHMEKEADAKAAIAQLNGKEVKGK 71 (90)
T ss_dssp CCSCCEEEESC--CTTCC---------HHHHHHHHHHHSCEEEEEECS----SCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEeCC--CCCCC---------HHHHHHHHHcCCCEEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 44679999999 55542 358999999999999999985 6999999999999999999999999999
Q ss_pred EEEEEeecCCc
Q 009565 497 QIHASEDDGLV 507 (532)
Q Consensus 497 ~I~V~~~dg~~ 507 (532)
+|+|.++....
T Consensus 72 ~l~v~~a~~~~ 82 (90)
T 2dnp_A 72 RINVELSTKGQ 82 (90)
T ss_dssp ECEEEESCCCC
T ss_pred EEEEEECCCCC
Confidence 99999988763
No 277
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.29 E-value=2.8e-12 Score=108.62 Aligned_cols=76 Identities=20% Similarity=0.436 Sum_probs=68.0
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEE
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIH 499 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~ 499 (532)
++|+|.|| |..++ .++|+++|++||.|..|.++.+ ++|||||+|.+.++|.+|+..|||..|+|++|+
T Consensus 1 ~~l~V~nL--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 68 (101)
T 2hvz_A 1 MKVYVGNL--GTGAG---------KGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVR 68 (101)
T ss_dssp CEEEEECC--CSSCS---------HHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCE
T ss_pred CEEEEeCC--CCCCC---------HHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEE
Confidence 37999999 55543 3489999999999999999987 789999999999999999999999999999999
Q ss_pred EEeecCCc
Q 009565 500 ASEDDGLV 507 (532)
Q Consensus 500 V~~~dg~~ 507 (532)
|.++..+.
T Consensus 69 V~~a~~~~ 76 (101)
T 2hvz_A 69 VELSTGMP 76 (101)
T ss_dssp EEESSSCC
T ss_pred EEEccCCC
Confidence 99997764
No 278
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1e-11 Score=104.04 Aligned_cols=79 Identities=16% Similarity=0.230 Sum_probs=68.9
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEE-EEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCC
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSV-KVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGG 495 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V-~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G 495 (532)
..+++|+|.|| |..+. .++|+++|++||.|..| .|+.++..|.|||+|.+.++|.+||..|||..|+|
T Consensus 13 ~~~~~l~V~nl--p~~~t---------~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g 81 (96)
T 2e44_A 13 QRIRKLQIRNI--PPHLQ---------WEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLEN 81 (96)
T ss_dssp CSCCCEEEEEE--CSSSC---------HHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCCEEEEEcC--CCCCC---------HHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34679999999 55543 34899999999999999 58877777889999999999999999999999999
Q ss_pred eEEEEEeecCC
Q 009565 496 RQIHASEDDGL 506 (532)
Q Consensus 496 R~I~V~~~dg~ 506 (532)
|+|+|.++..+
T Consensus 82 ~~l~V~~a~~~ 92 (96)
T 2e44_A 82 FTLKVAYIPDE 92 (96)
T ss_dssp CBCEEEECCCC
T ss_pred cEEEEEEcCcc
Confidence 99999998765
No 279
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.29 E-value=1.1e-11 Score=105.44 Aligned_cols=78 Identities=17% Similarity=0.354 Sum_probs=67.6
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcE
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRW 492 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~ 492 (532)
...++|+|.|| |..+. .++|+++|++|| |..|.|+.+ +++|||||+|.+.++|.+|| .|||..
T Consensus 13 ~~~~~l~V~nL--p~~~t---------~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~ 79 (103)
T 2dng_A 13 EPPYTAYVGNL--PFNTV---------QGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGAL 79 (103)
T ss_dssp SSCEEEEEESC--CTTCC---------HHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCeEEEEeCC--CCCCC---------HHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCe
Confidence 34679999999 55543 358999999997 999999865 46899999999999999999 899999
Q ss_pred eCCeEEEEEeecCCc
Q 009565 493 FGGRQIHASEDDGLV 507 (532)
Q Consensus 493 f~GR~I~V~~~dg~~ 507 (532)
|+|++|+|.++.++.
T Consensus 80 ~~g~~l~V~~a~~~~ 94 (103)
T 2dng_A 80 LGDRSLRVDIAEGRK 94 (103)
T ss_dssp ETTEECEEEECCCCC
T ss_pred ECCeEEEEEEecCCC
Confidence 999999999998764
No 280
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=1.3e-11 Score=102.47 Aligned_cols=78 Identities=23% Similarity=0.369 Sum_probs=67.4
Q ss_pred CCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcE
Q 009565 416 LTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRW 492 (532)
Q Consensus 416 ~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~ 492 (532)
....++|+|.|| |.... .++|+++|++| .|..|.|+.+ .++|+|||+|.+.++|.+||. |||..
T Consensus 7 ~~~~~~l~v~nL--p~~~t---------~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~ 73 (91)
T 2dgw_A 7 GTTCHTVKLRGA--PFNVT---------EKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREY 73 (91)
T ss_dssp CCCCCEEEEECC--CSSCC---------HHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEE
T ss_pred CCCccEEEEECC--CCCCC---------HHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCce
Confidence 345679999999 55543 35899999999 9999999865 568999999999999999999 99999
Q ss_pred eCCeEEEEEeecCC
Q 009565 493 FGGRQIHASEDDGL 506 (532)
Q Consensus 493 f~GR~I~V~~~dg~ 506 (532)
|+||.|.|.++..+
T Consensus 74 ~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 74 MGGRYIEVFREKSG 87 (91)
T ss_dssp ETTEEEEEEEESSC
T ss_pred eCCcEEEEEECCcC
Confidence 99999999998765
No 281
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.29 E-value=1.1e-11 Score=110.77 Aligned_cols=76 Identities=18% Similarity=0.293 Sum_probs=66.1
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcE
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRW 492 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~ 492 (532)
...++|+|.|| |..+. .++|+++|++||.|..|.|+.+ +++|||||+|.+.++|.+|+..|||..
T Consensus 61 ~~~~~l~v~nl--p~~~~---------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 129 (140)
T 2ku7_A 61 TTKRVLYVGGL--AEEVD---------DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 129 (140)
T ss_dssp SSCCEEEEECC--CTTCC---------HHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEE
T ss_pred CCCcEEEEEeC--CCCCC---------HHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCE
Confidence 35679999999 55542 3589999999999999999765 578999999999999999999999999
Q ss_pred eCCeEEEEEee
Q 009565 493 FGGRQIHASED 503 (532)
Q Consensus 493 f~GR~I~V~~~ 503 (532)
|+||+|+|.++
T Consensus 130 ~~g~~l~v~~A 140 (140)
T 2ku7_A 130 LFGRTIRVNLA 140 (140)
T ss_dssp ETTEEEEEEC-
T ss_pred ECCEEEEEEeC
Confidence 99999999874
No 282
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.6e-11 Score=103.43 Aligned_cols=76 Identities=12% Similarity=0.152 Sum_probs=66.0
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCe
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGR 496 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR 496 (532)
...++|||.|+ .+ ..++|+++|++||.|..|.|. .++|||||+|.+.++|.+||..|||..|+|+
T Consensus 13 ~~~~~l~V~n~----~~---------t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 77 (97)
T 1x5p_A 13 RKGNTLYVYGE----DM---------TPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESV 77 (97)
T ss_dssp CCCSEEEEECS----SC---------CHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CCCCEEEEcCC----CC---------CHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 34579999995 22 235899999999999999985 5679999999999999999999999999999
Q ss_pred EEEEEeecCCc
Q 009565 497 QIHASEDDGLV 507 (532)
Q Consensus 497 ~I~V~~~dg~~ 507 (532)
+|+|.++..+.
T Consensus 78 ~l~v~~a~~~~ 88 (97)
T 1x5p_A 78 QLKVNIARKQP 88 (97)
T ss_dssp EEEEECCSSCC
T ss_pred EEEEEECCCCC
Confidence 99999987764
No 283
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.29 E-value=9.1e-12 Score=107.61 Aligned_cols=75 Identities=23% Similarity=0.425 Sum_probs=66.6
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCe
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGR 496 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR 496 (532)
..+++|+|+|| |..+. .++|+++|++||.|..|.+. +|||||+|.+.++|.+|+..|||..|+|+
T Consensus 29 ~~~~~l~V~nL--p~~~t---------~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (108)
T 2jvo_A 29 LSNTRLFVRPF--PLDVQ---------ESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQ 93 (108)
T ss_dssp CSCSEEEECSS--CTTCC---------HHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEECC--CCCCC---------HHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 34579999999 55543 34899999999999999998 69999999999999999999999999999
Q ss_pred EEEEEeecCC
Q 009565 497 QIHASEDDGL 506 (532)
Q Consensus 497 ~I~V~~~dg~ 506 (532)
+|.|.++...
T Consensus 94 ~l~V~~a~~~ 103 (108)
T 2jvo_A 94 PLEVVYSKLP 103 (108)
T ss_dssp ECEEESCSCC
T ss_pred EEEEEEecCC
Confidence 9999998765
No 284
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.29 E-value=6.4e-12 Score=109.45 Aligned_cols=75 Identities=23% Similarity=0.345 Sum_probs=66.1
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
..++|||.|| |..+. .++|+++|++||.|..|.|+.+ +++|||||+|.+.++|.+||..|||..|
T Consensus 39 ~~~~l~V~nl--p~~~t---------~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 107 (118)
T 2khc_A 39 EGCNLFIYHL--PQEFT---------DTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV 107 (118)
T ss_dssp CSEEEEEECS--CTTCC---------HHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEE
T ss_pred CCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4579999999 55542 3589999999999999999855 5689999999999999999999999999
Q ss_pred CCeEEEEEee
Q 009565 494 GGRQIHASED 503 (532)
Q Consensus 494 ~GR~I~V~~~ 503 (532)
+|++|+|.++
T Consensus 108 ~g~~l~V~~a 117 (118)
T 2khc_A 108 GTKRLKVQLK 117 (118)
T ss_dssp TTEECCEEEC
T ss_pred CCEEEEEEec
Confidence 9999999875
No 285
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.29 E-value=1.3e-12 Score=108.75 Aligned_cols=75 Identities=19% Similarity=0.308 Sum_probs=62.4
Q ss_pred EEEEecccCCcccCcchhhHHHHHHHHHHHhhccC--CeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeC
Q 009565 421 TVILRFMFTPAEMRADENLRSELEADVQEECVKIG--PVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFG 494 (532)
Q Consensus 421 ~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG--~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~ 494 (532)
+|+|+|| |.... .++|+++|++|| .|.+|.|+.+ .++|||||+|.+.++|.+||+.|||..|+
T Consensus 3 ~l~V~nL--~~~~t---------~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~ 71 (90)
T 3p5t_L 3 ALYIGNL--TWWTT---------DEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH 71 (90)
T ss_dssp -CEEESC--CTTCC---------HHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS
T ss_pred EEEEeCC--CCCCC---------HHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 7899999 55442 358999999999 9999999865 56899999999999999999999999999
Q ss_pred CeEEEEEeecCC
Q 009565 495 GRQIHASEDDGL 506 (532)
Q Consensus 495 GR~I~V~~~dg~ 506 (532)
||+|+|.++...
T Consensus 72 gr~i~V~~~~~~ 83 (90)
T 3p5t_L 72 GQNPVVTPSNKL 83 (90)
T ss_dssp SCCCEECCC---
T ss_pred CEEEEEEECCCC
Confidence 999999887764
No 286
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.3e-11 Score=107.26 Aligned_cols=79 Identities=16% Similarity=0.185 Sum_probs=68.2
Q ss_pred CCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCc
Q 009565 416 LTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGR 491 (532)
Q Consensus 416 ~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr 491 (532)
....++|||.|| |..+. .++|+++|++||.|..|.|+.+ +++|||||+|.+.++|.+||..||+
T Consensus 14 ~~~~~~l~V~nl--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~- 81 (116)
T 2cqd_A 14 DTTFTKIFVGGL--PYHTT---------DASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP- 81 (116)
T ss_dssp SCSSSEEEEECC--CSSCC---------HHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-
T ss_pred CCCCCEEEEeCC--CCCCC---------HHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-
Confidence 345679999999 55543 3589999999999999999865 5789999999999999999999999
Q ss_pred EeCCeEEEEEeecCC
Q 009565 492 WFGGRQIHASEDDGL 506 (532)
Q Consensus 492 ~f~GR~I~V~~~dg~ 506 (532)
.|.|++|+|.++...
T Consensus 82 ~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 82 IIDGRKANVNLAYLG 96 (116)
T ss_dssp EETTEECEEEESTTT
T ss_pred cCCCEEEEEEEcccC
Confidence 899999999998654
No 287
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.28 E-value=5.8e-12 Score=112.45 Aligned_cols=80 Identities=23% Similarity=0.273 Sum_probs=69.2
Q ss_pred CCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCc
Q 009565 416 LTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGR 491 (532)
Q Consensus 416 ~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr 491 (532)
+...++|+|.|| |..+. .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+||..|||.
T Consensus 43 ~~~~~~l~V~nL--p~~~t---------e~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~ 111 (129)
T 2kxn_B 43 PDPNCCLGVFGL--SLYTT---------ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM 111 (129)
T ss_dssp CCCSSCBCEETC--TTSCC---------HHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 344579999999 55543 2489999999999999999864 67899999999999999999999999
Q ss_pred EeCCeEEEEEeecCC
Q 009565 492 WFGGRQIHASEDDGL 506 (532)
Q Consensus 492 ~f~GR~I~V~~~dg~ 506 (532)
.|+|++|.|.++..+
T Consensus 112 ~i~g~~l~V~~a~~~ 126 (129)
T 2kxn_B 112 ELDGRRIRVDFSITK 126 (129)
T ss_dssp CSSSSCCEESCCSSS
T ss_pred EECCEEEEEEEecCC
Confidence 999999999887654
No 288
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.28 E-value=2.7e-12 Score=107.23 Aligned_cols=76 Identities=18% Similarity=0.283 Sum_probs=64.9
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
.+++|+|.|| |..+. .++|+++|++||.|..+.++.+ +++|||||+|.+.++|.+||..|||..|
T Consensus 14 ~~~~l~V~nl--p~~~t---------~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 82 (95)
T 2ek1_A 14 GPTVIKVQNM--PFTVS---------IDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI 82 (95)
T ss_dssp -CEEEEEECC--CTTCC---------HHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE
Confidence 4579999999 55542 3589999999999987777643 5679999999999999999999999999
Q ss_pred CCeEEEEEeec
Q 009565 494 GGRQIHASEDD 504 (532)
Q Consensus 494 ~GR~I~V~~~d 504 (532)
+||+|+|.++.
T Consensus 83 ~gr~l~v~~a~ 93 (95)
T 2ek1_A 83 GSRKVKLSGPS 93 (95)
T ss_dssp TTEECEEECCC
T ss_pred CCcEEEEEecc
Confidence 99999998864
No 289
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=6e-12 Score=106.06 Aligned_cols=79 Identities=24% Similarity=0.354 Sum_probs=68.4
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCee-EEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCc
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVD-SVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGR 491 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~-~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr 491 (532)
..+++|+|.|| |..+. .++|+++|++||.|. .|.|+.+ +++|||||+|.+.++|.+|+..|||.
T Consensus 7 ~~~~~l~V~nL--p~~~t---------~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 75 (99)
T 2div_A 7 GMAASLWMGDL--EPYMD---------ENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGK 75 (99)
T ss_dssp SSSSEEEECSC--CTTCC---------HHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTS
T ss_pred CCccEEEEeCC--CCCCC---------HHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCC
Confidence 34679999999 55543 358999999999999 9999865 46799999999999999999999999
Q ss_pred EeCCeE----EEEEeecCC
Q 009565 492 WFGGRQ----IHASEDDGL 506 (532)
Q Consensus 492 ~f~GR~----I~V~~~dg~ 506 (532)
.|.|+. |+|.++...
T Consensus 76 ~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 76 PLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp EESSCSSCEECCEEETTCC
T ss_pred ccCCCCcceeEEEeecCCC
Confidence 999999 999988654
No 290
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.28 E-value=1.3e-11 Score=110.66 Aligned_cols=80 Identities=19% Similarity=0.388 Sum_probs=69.5
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcE
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRW 492 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~ 492 (532)
...++|+|.|| |..+. .++|+++|++||.|.+|.|+.+ +++|||||+|.+.++|.+||..|||..
T Consensus 40 ~~~~~l~V~nL--p~~~~---------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 108 (139)
T 1u6f_A 40 DVLRNLMVNYI--PTTVD---------EVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFN 108 (139)
T ss_dssp TTTSEEEEESC--STTCC---------HHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEE
T ss_pred CCCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 34579999999 55543 3589999999999999999865 458999999999999999999999999
Q ss_pred eCCeEEEEEeecCCc
Q 009565 493 FGGRQIHASEDDGLV 507 (532)
Q Consensus 493 f~GR~I~V~~~dg~~ 507 (532)
|+|+.|+|.++..+.
T Consensus 109 ~~g~~l~v~~a~~~~ 123 (139)
T 1u6f_A 109 ILNKRLKVALAASGH 123 (139)
T ss_dssp CSSCEEEEEESSCCC
T ss_pred ECCeEEEEEECCCCC
Confidence 999999999988763
No 291
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=5.4e-12 Score=108.40 Aligned_cols=74 Identities=19% Similarity=0.282 Sum_probs=65.2
Q ss_pred CcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcEeCC
Q 009565 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFGG 495 (532)
Q Consensus 419 ~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G 495 (532)
.++|||+|| |.+.+ .++|+++|++||.|.+|.|+.+ .++|||||+|.+.++|.+||. |||..|+|
T Consensus 11 ~~~lfV~~L--p~~~t---------e~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g 78 (103)
T 1s79_A 11 NRSVYIKGF--PTDAT---------LDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKE 78 (103)
T ss_dssp GGCEEEECC--CTTCC---------HHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTT
T ss_pred CCEEEEECC--CCCCC---------HHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECC
Confidence 469999999 55543 3589999999999999999874 578999999999999999999 89999999
Q ss_pred eEEEEEeec
Q 009565 496 RQIHASEDD 504 (532)
Q Consensus 496 R~I~V~~~d 504 (532)
|+|.|.+..
T Consensus 79 r~l~V~~~~ 87 (103)
T 1s79_A 79 TDLLILFKD 87 (103)
T ss_dssp TTCEEEEHH
T ss_pred EEEEEEEch
Confidence 999998754
No 292
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=3.5e-12 Score=108.34 Aligned_cols=77 Identities=23% Similarity=0.461 Sum_probs=67.2
Q ss_pred CcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeC
Q 009565 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFG 494 (532)
Q Consensus 419 ~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~ 494 (532)
.++|+|.|| |..+. .++|+++|++||.|..|.|+.+ +++|||||+|.+.++|.+|+..|||..|+
T Consensus 8 ~~~l~V~nl--p~~~~---------~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (104)
T 1p1t_A 8 LRSVFVGNI--PYEAT---------EEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS 76 (104)
T ss_dssp HSCEEEESC--CTTSC---------HHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS
T ss_pred ccEEEEeCC--CCcCC---------HHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 358999999 55442 3589999999999999999855 45899999999999999999999999999
Q ss_pred CeEEEEEeecCC
Q 009565 495 GRQIHASEDDGL 506 (532)
Q Consensus 495 GR~I~V~~~dg~ 506 (532)
|+.|+|.++..+
T Consensus 77 g~~l~v~~a~~~ 88 (104)
T 1p1t_A 77 GRALRVDNAASE 88 (104)
T ss_dssp SSCBEEEETTCT
T ss_pred CcEEEEEeCCCc
Confidence 999999987765
No 293
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=2.9e-11 Score=102.10 Aligned_cols=77 Identities=22% Similarity=0.371 Sum_probs=66.7
Q ss_pred CCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhcc--CCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 416 LTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKI--GPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 416 ~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskf--G~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
....++|||.|| |..+. .++|+++|++| |.|.+|.+. +|||||+|.+.++|.+||..|||..|
T Consensus 12 ~~~~~~l~V~nL--p~~~t---------~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (99)
T 2cpd_A 12 MSSVKILYVRNL--MLSTS---------EEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVL 76 (99)
T ss_dssp SSCCCEEEEESC--CTTCC---------HHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEE
T ss_pred cCCcCEEEEeCC--CCCCC---------HHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEe
Confidence 345679999999 55542 34899999999 999999875 48999999999999999999999999
Q ss_pred CCeEEEEEeecCCc
Q 009565 494 GGRQIHASEDDGLV 507 (532)
Q Consensus 494 ~GR~I~V~~~dg~~ 507 (532)
+|++|+|.++..+.
T Consensus 77 ~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 77 DGSPIEVTLAKPVD 90 (99)
T ss_dssp TTEEEEEECCCCCC
T ss_pred CCcEEEEEECCCCC
Confidence 99999999988764
No 294
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.28 E-value=9.3e-12 Score=120.43 Aligned_cols=83 Identities=33% Similarity=0.594 Sum_probs=72.9
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc--------CCCcEEEEEeCCHHHHHHHHHHHC
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN--------HPQGVVLVRFKDRKDAQKCIELMN 489 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~--------~~kG~aFV~F~s~eeA~kAi~~Ln 489 (532)
.+.++.+.|++.+.++.+ ++.++|+++|++||.|.+|.|+++ +++|++||+|.+.++|.+|+..||
T Consensus 123 ~s~v~~l~n~v~~~e~~~------e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~ 196 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDD------DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN 196 (222)
T ss_dssp BCSEEEEESSCCGGGCCT------THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ccccchhhcCCCHHHHHH------HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhc
Confidence 456889999988776643 466899999999999999999843 567999999999999999999999
Q ss_pred CcEeCCeEEEEEeecCC
Q 009565 490 GRWFGGRQIHASEDDGL 506 (532)
Q Consensus 490 Gr~f~GR~I~V~~~dg~ 506 (532)
|++|+||+|.|.|++..
T Consensus 197 gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 197 GRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp TCBSSSSBCEEEECCHH
T ss_pred CceECCeEEEEEEcCHH
Confidence 99999999999998853
No 295
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.27 E-value=4.9e-12 Score=107.39 Aligned_cols=77 Identities=18% Similarity=0.327 Sum_probs=65.7
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc-----CCCcEEEEEeCCHHHHHHHHHHHCCc
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN-----HPQGVVLVRFKDRKDAQKCIELMNGR 491 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~-----~~kG~aFV~F~s~eeA~kAi~~LnGr 491 (532)
...++|+|+|| |..+..+ +|+++|++|| |.+|.|+.+ +++|||||+|.+.++|.+|| .|||.
T Consensus 17 ~~~~~l~V~nL--p~~~t~~---------~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~ 83 (100)
T 2j76_E 17 SPPYTAFLGNL--PYDVTEE---------SIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE 83 (100)
T ss_dssp ---CEEEESCC--SSCCSSS---------HHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTC
T ss_pred CCCcEEEEeCC--CCCCCHH---------HHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCC
Confidence 34579999999 6655443 8899999999 999999754 46899999999999999999 89999
Q ss_pred EeCCeEEEEEeecCC
Q 009565 492 WFGGRQIHASEDDGL 506 (532)
Q Consensus 492 ~f~GR~I~V~~~dg~ 506 (532)
.|+||.|+|.++..+
T Consensus 84 ~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 84 SLGNRRIRVDVADQA 98 (100)
T ss_dssp CBTTBCCCCEECCCS
T ss_pred EECCeEEEEEeccCC
Confidence 999999999998765
No 296
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.27 E-value=1.2e-11 Score=109.23 Aligned_cols=75 Identities=28% Similarity=0.355 Sum_probs=66.0
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..+++|||+|| ++|+++|+++|++||.|.. |.|. .++|||||+|.+.++|.+||..|||..|.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~--------v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~- 99 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIID--------LSMD------PPRNCAFVTYEKMESADQAVAELNGTQVE- 99 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSC--------EEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCS-
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEE--------EEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 35689999996 7999999999999999997 8885 46899999999999999999999999996
Q ss_pred CCCeeEEEeccccc
Q 009565 366 DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 G~~~~I~V~~A~~~ 379 (532)
| ++|.|..+...
T Consensus 100 g--~~l~V~~a~~~ 111 (121)
T 2bz2_A 100 S--VQLKVNIARKQ 111 (121)
T ss_dssp S--CBCEEEECCSS
T ss_pred C--eEEEEEEeCCC
Confidence 5 56888888743
No 297
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.27 E-value=8.4e-12 Score=109.96 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=68.6
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
..++|||.|| |..++ .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+||..|||..|
T Consensus 21 ~~~~l~V~nl--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 89 (126)
T 3ex7_B 21 EGWILFVTGV--HEEAT---------EEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL 89 (126)
T ss_dssp SSEEEEEESC--CTTCC---------HHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee
Confidence 4569999999 55442 3589999999999999999754 5689999999999999999999999999
Q ss_pred CCeEEEEEeecCCc
Q 009565 494 GGRQIHASEDDGLV 507 (532)
Q Consensus 494 ~GR~I~V~~~dg~~ 507 (532)
+|+.|.|.++..+.
T Consensus 90 ~g~~l~v~~a~~~~ 103 (126)
T 3ex7_B 90 MGQPISVDWCFVRG 103 (126)
T ss_dssp SSSBCEEEESEESS
T ss_pred CCeEEEEEEecCCC
Confidence 99999999987653
No 298
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1.7e-11 Score=104.39 Aligned_cols=77 Identities=18% Similarity=0.309 Sum_probs=67.3
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc-----CCCcEEEEEeCCHHHHHHHHHHHCCcE
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN-----HPQGVVLVRFKDRKDAQKCIELMNGRW 492 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~-----~~kG~aFV~F~s~eeA~kAi~~LnGr~ 492 (532)
.+++|||.|| |..+. .++|+++|++|| |..|.|+.+ +++|||||+|.+.++|.+|| .|||..
T Consensus 14 ~~~~l~V~nl--p~~~t---------~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~ 80 (104)
T 1wi8_A 14 PPYTAFLGNL--PYDVT---------EESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES 80 (104)
T ss_dssp SCEEEEEESC--CSSCC---------HHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCE
T ss_pred CCCEEEEeCC--CCcCC---------HHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCE
Confidence 4579999999 55542 358999999999 999999854 45899999999999999999 999999
Q ss_pred eCCeEEEEEeecCCc
Q 009565 493 FGGRQIHASEDDGLV 507 (532)
Q Consensus 493 f~GR~I~V~~~dg~~ 507 (532)
|+|++|.|.++..+.
T Consensus 81 ~~g~~l~V~~a~~~~ 95 (104)
T 1wi8_A 81 LGNKRIRVDVADQAQ 95 (104)
T ss_dssp ETTEECEEEECCCCC
T ss_pred eCCcEEEEEEccCCC
Confidence 999999999988764
No 299
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.27 E-value=1.5e-11 Score=101.10 Aligned_cols=75 Identities=16% Similarity=0.292 Sum_probs=63.8
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcE
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRW 492 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~ 492 (532)
...++|+|+|| |.... .++|+++|++||.|.+|.|+.+ .++|||||+|.+.++|.+|+.. +|..
T Consensus 9 ~~~~~l~V~nl--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~ 76 (87)
T 3s7r_A 9 EDAGKMFVGGL--SWDTS---------KKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHR 76 (87)
T ss_dssp SCTTEEEEECC--CTTCC---------HHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEE
T ss_pred CCCCEEEEeCC--CCCCC---------HHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCE
Confidence 34679999999 55542 3589999999999999999854 4589999999999999999965 8889
Q ss_pred eCCeEEEEEee
Q 009565 493 FGGRQIHASED 503 (532)
Q Consensus 493 f~GR~I~V~~~ 503 (532)
|+||+|.|.++
T Consensus 77 ~~g~~i~v~~A 87 (87)
T 3s7r_A 77 LDGRVIDPKKA 87 (87)
T ss_dssp ETTEEEEEEEC
T ss_pred ECCEEEEEEeC
Confidence 99999999763
No 300
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.27 E-value=8.1e-12 Score=104.68 Aligned_cols=79 Identities=18% Similarity=0.255 Sum_probs=67.1
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCe
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGR 496 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR 496 (532)
...++|+|.|| |..+. .++|+++|++||.|..+ .....++|||||+|.+.++|.+|+..|||..|+|+
T Consensus 14 ~~~~~l~V~nL--~~~~t---------~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 81 (96)
T 1fjc_A 14 RAARTLLAKNL--SFNIT---------EDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 81 (96)
T ss_dssp TGGGEEEEESC--CSSCC---------HHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTE
T ss_pred CCCCEEEEeCC--CCCCC---------HHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 34579999999 55542 35899999999999877 44457789999999999999999999999999999
Q ss_pred EEEEEeecCCc
Q 009565 497 QIHASEDDGLV 507 (532)
Q Consensus 497 ~I~V~~~dg~~ 507 (532)
+|.|.++..+.
T Consensus 82 ~l~v~~a~~~~ 92 (96)
T 1fjc_A 82 SVSLYYTGEKG 92 (96)
T ss_dssp EEEEEECSSSC
T ss_pred EEEEEEcCCCC
Confidence 99999987653
No 301
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.27 E-value=6.8e-12 Score=109.67 Aligned_cols=79 Identities=14% Similarity=0.263 Sum_probs=67.0
Q ss_pred CCcEEEEecccCCcc-cCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCC--cEeC
Q 009565 418 IPATVILRFMFTPAE-MRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNG--RWFG 494 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~-~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnG--r~f~ 494 (532)
..++|||+|| |.+ ..+ ++|+++|++||.|.+|.|.+ ++|||||+|.+.++|.+||..||+ ..|.
T Consensus 24 p~~~l~V~NL--p~~~~te---------~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~ 90 (112)
T 1x4f_A 24 LGRVIHLSNL--PHSGYSD---------SAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALWFQ 90 (112)
T ss_dssp CCCEEEEESC--CCSSCCS---------HHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCCSS
T ss_pred CCCEEEEeCC--CCccCCH---------HHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 4579999999 554 433 38999999999999999985 579999999999999999998864 5699
Q ss_pred CeEEEEEeecCCccc
Q 009565 495 GRQIHASEDDGLVNH 509 (532)
Q Consensus 495 GR~I~V~~~dg~~~~ 509 (532)
||+|.|.++..+...
T Consensus 91 Gr~l~V~~a~~~~~~ 105 (112)
T 1x4f_A 91 GRCVKVDLSEKYKKL 105 (112)
T ss_dssp SSCCEEEEECSCSSS
T ss_pred CEEEEEEECcccccc
Confidence 999999999876543
No 302
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.26 E-value=1.8e-11 Score=112.11 Aligned_cols=79 Identities=20% Similarity=0.318 Sum_probs=69.2
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcE
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRW 492 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~ 492 (532)
..+++|+|.|| |..++ .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+||..|||..
T Consensus 37 ~~~~~l~V~nl--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~ 105 (156)
T 1h2v_Z 37 KKSCTLYVGNL--SFYTT---------EEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTR 105 (156)
T ss_dssp TTCCEEEEESC--CTTCC---------HHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSE
T ss_pred CCCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 34679999999 55442 3589999999999999999865 467999999999999999999999999
Q ss_pred eCCeEEEEEeecCC
Q 009565 493 FGGRQIHASEDDGL 506 (532)
Q Consensus 493 f~GR~I~V~~~dg~ 506 (532)
|+|++|+|.++.+.
T Consensus 106 ~~g~~l~V~~a~~~ 119 (156)
T 1h2v_Z 106 LDDRIIRTDWDAGF 119 (156)
T ss_dssp ETTEECEEEEESCC
T ss_pred ECCeEEEEEECCCC
Confidence 99999999999875
No 303
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.26 E-value=6.7e-12 Score=120.72 Aligned_cols=79 Identities=15% Similarity=0.303 Sum_probs=67.2
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCcc--ccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGII--KEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I--~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
.+++|||+|||+++|+++|+++|++||.| .+ |+|+.++ |..+|+|||+|.+.++|..||..|||..|.
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~--------v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~ 191 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTS--------VKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMK 191 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSE--------EEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEEC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEE--------EEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCcc
Confidence 45789999999999999999999999998 65 8998873 667799999999999999999999999996
Q ss_pred C-CCCeeEEEec
Q 009565 365 P-DGKIPMSVTQ 375 (532)
Q Consensus 365 ~-G~~~~I~V~~ 375 (532)
+ +++.++.|..
T Consensus 192 g~~~~~p~~vk~ 203 (205)
T 3tyt_A 192 NPNGPYPYTLKL 203 (205)
T ss_dssp CSSSSSCEECEE
T ss_pred CCCCCcceEEEe
Confidence 2 2334555543
No 304
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.26 E-value=8.3e-12 Score=115.15 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=67.6
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..++|||+|||+++|+++|+++|++||.|.. + ..+|.++|||||+|.+.++|.+|+..|||..|. |
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~--------~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g 163 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRL--------V-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID-G 163 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEE--------E-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEET-T
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEE--------e-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC-C
Confidence 4589999999999999999999999998763 3 368999999999999999999999999999996 5
Q ss_pred CCeeEEEeccc
Q 009565 367 GKIPMSVTQAK 377 (532)
Q Consensus 367 ~~~~I~V~~A~ 377 (532)
++|.|.++.
T Consensus 164 --~~i~v~~a~ 172 (175)
T 1fje_B 164 --RSVSLYYTG 172 (175)
T ss_dssp --EEEEEEECS
T ss_pred --eEEEEEecC
Confidence 679998876
No 305
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=1.3e-11 Score=104.60 Aligned_cols=80 Identities=19% Similarity=0.198 Sum_probs=65.3
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCe
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGR 496 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR 496 (532)
...++|||.|| |..+. .++|+++|++||.|.-+.....+++|||||+|.+.++|.+||..|||..|.|+
T Consensus 13 ~~~~~l~V~nL--p~~~t---------~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 81 (101)
T 2fc9_A 13 GESKTLVLSNL--SYSAT---------EETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGR 81 (101)
T ss_dssp CCCSEEEEESC--CTTCC---------HHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTE
T ss_pred CCCCEEEEeCC--CCCCC---------HHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCe
Confidence 35679999999 55542 35899999999988322222336789999999999999999999999999999
Q ss_pred EEEEEeecCCc
Q 009565 497 QIHASEDDGLV 507 (532)
Q Consensus 497 ~I~V~~~dg~~ 507 (532)
+|+|.++..+.
T Consensus 82 ~l~v~~a~~~~ 92 (101)
T 2fc9_A 82 AIRLELQGPRG 92 (101)
T ss_dssp EEEEEECSSCC
T ss_pred EEEEEEcCCCC
Confidence 99999988763
No 306
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=7.1e-12 Score=106.60 Aligned_cols=80 Identities=15% Similarity=0.199 Sum_probs=69.3
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhc-cCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcE-
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVK-IGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRW- 492 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fsk-fG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~- 492 (532)
..++|+|.|| |..++ .++|+++|++ ||.|..|.|+.+ .++|||||+|.+.++|.+||..|||..
T Consensus 8 ~~~~l~V~nL--p~~~t---------~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 76 (104)
T 2dhg_A 8 PEYSLFVGDL--TPDVD---------DGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVG 76 (104)
T ss_dssp CCCCEEEECC--CTTCC---------HHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCS
T ss_pred CCcEEEEeCC--CCCCC---------HHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcc
Confidence 4569999999 55542 3589999999 999999999865 568999999999999999999999999
Q ss_pred eCCeEEEEEeecCCcc
Q 009565 493 FGGRQIHASEDDGLVN 508 (532)
Q Consensus 493 f~GR~I~V~~~dg~~~ 508 (532)
|+|++|+|.++..+..
T Consensus 77 ~~g~~l~v~~a~~~~~ 92 (104)
T 2dhg_A 77 LGSKPVRLSVAIPKAS 92 (104)
T ss_dssp SSSSCCCCCBCCCCCS
T ss_pred cCCEeEEEEEccCCCc
Confidence 9999999999876543
No 307
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=3.1e-12 Score=104.85 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=64.6
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
.+++|+|.|| |..+. .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+|+..|||..|
T Consensus 4 ~~~~l~v~nl--p~~~t---------~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 72 (85)
T 1x4e_A 4 GSSGLYIRGL--QPGTT---------DQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV 72 (85)
T ss_dssp CCCEEEEESC--CTTCC---------HHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred CCcEEEEeCC--CCCCC---------HHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE
Confidence 4579999999 55543 3489999999999999999865 5689999999999999999999999999
Q ss_pred CCeEEEEEe
Q 009565 494 GGRQIHASE 502 (532)
Q Consensus 494 ~GR~I~V~~ 502 (532)
+||.|++.+
T Consensus 73 ~g~~~~~~~ 81 (85)
T 1x4e_A 73 QAQMAKQSG 81 (85)
T ss_dssp CEESCCSSC
T ss_pred eeEEEeecC
Confidence 999998754
No 308
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.25 E-value=1.3e-11 Score=113.97 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=67.3
Q ss_pred CcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccC--CeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcE
Q 009565 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIG--PVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRW 492 (532)
Q Consensus 419 ~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG--~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~ 492 (532)
.++|||+|| +..+. .++|+++|++|| .|..|.|+.+ .++|||||+|.+.++|.+||..|||..
T Consensus 55 ~~~lfVgnL--p~~~t---------e~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~ 123 (156)
T 3n9u_C 55 RAAVYVGSF--SWWTT---------DQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKV 123 (156)
T ss_dssp -CEEEEECC--CTTCC---------HHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCE
T ss_pred CCEEEEeCC--CCCCC---------HHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE
Confidence 469999999 55542 358999999999 9999999855 568999999999999999999999999
Q ss_pred eCCeEEEEEeecCC
Q 009565 493 FGGRQIHASEDDGL 506 (532)
Q Consensus 493 f~GR~I~V~~~dg~ 506 (532)
|+||+|.|.++..+
T Consensus 124 ~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 124 LNGEKVDVRPATRQ 137 (156)
T ss_dssp ETTEECEEEECCHH
T ss_pred ECCeEeEEEEcCCC
Confidence 99999999988764
No 309
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=1.3e-11 Score=107.03 Aligned_cols=75 Identities=20% Similarity=0.330 Sum_probs=65.6
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCC
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGG 495 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G 495 (532)
++|||.|| |..+. .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+|| .|||..|+|
T Consensus 26 ~~l~V~nl--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 93 (114)
T 2cq4_A 26 RTVFCMQL--AARIR---------PRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG 93 (114)
T ss_dssp TEEEEESC--CTTCC---------HHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT
T ss_pred CEEEEeCC--CCCCC---------HHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC
Confidence 58999999 55542 3489999999999999999854 56899999999999999999 999999999
Q ss_pred eEEEEEeecCC
Q 009565 496 RQIHASEDDGL 506 (532)
Q Consensus 496 R~I~V~~~dg~ 506 (532)
+.|.|.++..+
T Consensus 94 ~~l~V~~a~~~ 104 (114)
T 2cq4_A 94 VPIIVQASQAE 104 (114)
T ss_dssp EEEEEEEHHHH
T ss_pred eEEEEEecCCC
Confidence 99999887653
No 310
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.25 E-value=1.3e-11 Score=114.73 Aligned_cols=76 Identities=13% Similarity=0.079 Sum_probs=66.5
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCC--eE
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGG--RQ 497 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G--R~ 497 (532)
..|+|.|| +..++ .++|+++|++||.|.+|.|+.++++|||||+|.+.++|.+|+..|||+.|.| ++
T Consensus 47 l~l~VgNL--~~~vt---------ed~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~ 115 (164)
T 1sjr_A 47 LRIIVENL--FYPVT---------LDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCT 115 (164)
T ss_dssp EEEEECSC--CSCCC---------HHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSC
T ss_pred EEEEEeCc--CCCCC---------HHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcE
Confidence 46889999 44432 2489999999999999999877788999999999999999999999999965 99
Q ss_pred EEEEeecCC
Q 009565 498 IHASEDDGL 506 (532)
Q Consensus 498 I~V~~~dg~ 506 (532)
|+|.|+..+
T Consensus 116 L~V~~Ak~~ 124 (164)
T 1sjr_A 116 LRIDFSKLT 124 (164)
T ss_dssp EEEEECSSS
T ss_pred EEEEEecCC
Confidence 999998775
No 311
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.24 E-value=5.7e-12 Score=100.74 Aligned_cols=71 Identities=14% Similarity=0.223 Sum_probs=61.6
Q ss_pred EEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCe
Q 009565 421 TVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGGR 496 (532)
Q Consensus 421 ~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR 496 (532)
+|+|+|| |.... .++|+++|++||.|..|.++.+ .++|+|||+|.+.++|.+|+. |||..|+|+
T Consensus 1 ~l~v~nl--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~ 68 (75)
T 2mss_A 1 KIFVGGL--SVNTT---------VEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNK 68 (75)
T ss_dssp CEEEECC--CSSCC---------HHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSC
T ss_pred CEEEecC--CCCCC---------HHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCE
Confidence 4889999 55543 3589999999999999999754 568999999999999999998 999999999
Q ss_pred EEEEEee
Q 009565 497 QIHASED 503 (532)
Q Consensus 497 ~I~V~~~ 503 (532)
+|.|.++
T Consensus 69 ~l~v~~A 75 (75)
T 2mss_A 69 MVECKKA 75 (75)
T ss_dssp CCEEECC
T ss_pred EEEEEeC
Confidence 9999763
No 312
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=1.1e-11 Score=107.43 Aligned_cols=79 Identities=13% Similarity=0.190 Sum_probs=68.7
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCe----eEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPV----DSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V----~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
..++|||.|| |..+. .++|+++|++||.| ..+.+...+++|||||+|.+.++|.+||..|||..|
T Consensus 24 ~~~~l~V~nL--p~~~t---------~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 92 (115)
T 2cpx_A 24 PNKVLYLKNL--SPRVT---------ERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL 92 (115)
T ss_dssp CCSEEEEECC--CTTCC---------HHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC
T ss_pred CCCEEEEeCC--CCCCC---------HHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4579999999 55442 35899999999998 677777778899999999999999999999999999
Q ss_pred CCeEEEEEeecCCc
Q 009565 494 GGRQIHASEDDGLV 507 (532)
Q Consensus 494 ~GR~I~V~~~dg~~ 507 (532)
+|++|+|.++..+.
T Consensus 93 ~g~~l~v~~a~~~~ 106 (115)
T 2cpx_A 93 YGKILVIEFGKNKK 106 (115)
T ss_dssp SSCBCEEEECCCCS
T ss_pred CCcEEEEEEccCCC
Confidence 99999999988764
No 313
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.24 E-value=1.2e-11 Score=103.96 Aligned_cols=75 Identities=9% Similarity=0.182 Sum_probs=66.0
Q ss_pred CCcEEEEecccCCc-ccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCe
Q 009565 418 IPATVILRFMFTPA-EMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGR 496 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~-~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR 496 (532)
..++|+|.|| |. .+. .++|+++|++||.|..|.|. +|||||+|.+.++|.+|+..|||..|.|+
T Consensus 9 ~~~~l~V~nl--p~~~~t---------~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (96)
T 2kvi_A 9 PKSRLFIGNL--PLKNVS---------KEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGK 73 (96)
T ss_dssp CCEEEEEESS--TTSCCC---------HHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTT
T ss_pred CCCEEEEeCC--CcccCC---------HHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 4579999999 54 442 35899999999999999995 59999999999999999999999999999
Q ss_pred EEEEEeecCCc
Q 009565 497 QIHASEDDGLV 507 (532)
Q Consensus 497 ~I~V~~~dg~~ 507 (532)
+|+|.++....
T Consensus 74 ~l~V~~a~~~~ 84 (96)
T 2kvi_A 74 KLILEVSSSNA 84 (96)
T ss_dssp TBCEEEEECCC
T ss_pred EEEEEEcCcCC
Confidence 99999987653
No 314
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=1.2e-11 Score=105.57 Aligned_cols=80 Identities=13% Similarity=0.139 Sum_probs=68.9
Q ss_pred CCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCc
Q 009565 416 LTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGR 491 (532)
Q Consensus 416 ~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr 491 (532)
....++|||.|| |..+. .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+||.. ||.
T Consensus 13 ~~~~~~l~V~nl--p~~~t---------~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~ 80 (105)
T 2dh8_A 13 ADEIGKLFVGGL--DWSTT---------QETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPH 80 (105)
T ss_dssp SSSSSEECCBSC--CTTCC---------HHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSE
T ss_pred CCCCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCC
Confidence 345679999999 55542 3589999999999999999875 5679999999999999999999 999
Q ss_pred EeCCeEEEEEeecCCc
Q 009565 492 WFGGRQIHASEDDGLV 507 (532)
Q Consensus 492 ~f~GR~I~V~~~dg~~ 507 (532)
.|+|++|.|.++..+.
T Consensus 81 ~~~g~~l~V~~a~~~~ 96 (105)
T 2dh8_A 81 TLDGRNIDPKPCTPRG 96 (105)
T ss_dssp EETTEEEBCCCSCCSS
T ss_pred eECCEEEEEEEccCCC
Confidence 9999999999887664
No 315
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.24 E-value=3.5e-12 Score=105.61 Aligned_cols=76 Identities=20% Similarity=0.302 Sum_probs=64.2
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCC
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGG 495 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G 495 (532)
++|+|+|| |.... .++|+++|++||.|.+|.++.+ .++|||||+|.+.+ |.+|+..|||..|+|
T Consensus 2 ~~l~V~nL--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g 69 (90)
T 2ki2_A 2 RNIYVGNL--VYSAT---------SEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMG 69 (90)
T ss_dssp EEEEEEEE--CTTSS---------HHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSS
T ss_pred cEEEECCC--CCCCC---------HHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECC
Confidence 47999999 55543 3489999999999999999864 56899999999999 999999999999999
Q ss_pred eEEEEEeecCCc
Q 009565 496 RQIHASEDDGLV 507 (532)
Q Consensus 496 R~I~V~~~dg~~ 507 (532)
++|+|.++....
T Consensus 70 ~~l~V~~a~~~~ 81 (90)
T 2ki2_A 70 RTIRVTEANPKK 81 (90)
T ss_dssp SSCSEEEC----
T ss_pred eEEEEEEcCCCC
Confidence 999999988764
No 316
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=2.2e-11 Score=102.73 Aligned_cols=76 Identities=16% Similarity=0.168 Sum_probs=64.4
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhcc-CCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEE
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKI-GPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQI 498 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskf-G~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I 498 (532)
++|||.|| |..... ..++.+|+++|++| |.|..|. .|+|||.|.+.++|.+|++.|||..|.||+|
T Consensus 10 T~lYV~NL--~~~~~~-----~~lk~~L~~lF~~yGG~Vl~Vt------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 10 TLLYVYNL--PANKDG-----KSVSNRLRRLSDNCGGKVLSIT------GCSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp EEEEEESC--CTTSCH-----HHHHHHHHHHHHTTTCCEEECC------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred eEEEEeCC--CCcCCH-----HHHHHHHHHHHHHcCCeeEEEe------cCEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 35999999 444322 45678899999999 5999983 2999999999999999999999999999999
Q ss_pred EEEeecCCcc
Q 009565 499 HASEDDGLVN 508 (532)
Q Consensus 499 ~V~~~dg~~~ 508 (532)
+|.|+....+
T Consensus 77 ~v~~A~~~sd 86 (96)
T 2diu_A 77 IVSFTPKNRE 86 (96)
T ss_dssp EEESSCCSCC
T ss_pred EEEecCCCcc
Confidence 9999887644
No 317
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=1.3e-11 Score=103.01 Aligned_cols=76 Identities=12% Similarity=0.122 Sum_probs=64.8
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCC-eeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCC-cEeCC
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGP-VDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNG-RWFGG 495 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~-V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnG-r~f~G 495 (532)
..++|||.|| |..+. .++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..||| ..|+|
T Consensus 7 ~~~~l~V~nL--p~~~t---------~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 72 (93)
T 2cqh_A 7 GMNKLYIGNL--SPAVT---------ADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHG 72 (93)
T ss_dssp CCCCEEEECC--CTTCC---------HHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETT
T ss_pred CCcEEEEeCC--CCCCC---------HHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECC
Confidence 4579999999 55543 3589999999999 6666663 469999999999999999999999 99999
Q ss_pred eEEEEEeecCCc
Q 009565 496 RQIHASEDDGLV 507 (532)
Q Consensus 496 R~I~V~~~dg~~ 507 (532)
++|+|.++..+.
T Consensus 73 ~~l~v~~a~~~~ 84 (93)
T 2cqh_A 73 KIMEVDYSVSKK 84 (93)
T ss_dssp EECEEEECCCCC
T ss_pred EEEEEEEccCcc
Confidence 999999988763
No 318
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.23 E-value=2.2e-11 Score=107.00 Aligned_cols=75 Identities=17% Similarity=0.358 Sum_probs=65.9
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCC
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGG 495 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G 495 (532)
++|||.|| |..+. .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+|| .|||..|+|
T Consensus 37 ~~l~V~nl--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 104 (124)
T 2jwn_A 37 RSVYVGNV--DYGST---------AQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG 104 (124)
T ss_dssp TEEEEEEE--CTTCC---------HHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT
T ss_pred CEEEEeCC--CCCCC---------HHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC
Confidence 48999999 55543 3589999999999999999754 56899999999999999999 899999999
Q ss_pred eEEEEEeecCC
Q 009565 496 RQIHASEDDGL 506 (532)
Q Consensus 496 R~I~V~~~dg~ 506 (532)
+.|+|.+....
T Consensus 105 ~~l~V~~a~~~ 115 (124)
T 2jwn_A 105 RTIKVLPKRTN 115 (124)
T ss_dssp EECEEEESSCC
T ss_pred eEEEEEECCCC
Confidence 99999998754
No 319
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.23 E-value=2e-11 Score=105.13 Aligned_cols=74 Identities=20% Similarity=0.359 Sum_probs=65.1
Q ss_pred CCcEEEEecccCCcc-cCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCe
Q 009565 418 IPATVILRFMFTPAE-MRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGR 496 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~-~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR 496 (532)
..++|||.|| |.. +. .++|+++|++||.|..|.| ++|||||+|.+.++|.+|+..|||..|+|+
T Consensus 26 ~~~~l~V~nl--~~~~~t---------~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 90 (110)
T 1wf1_A 26 INSRVFIGNL--NTALVK---------KSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAGQ 90 (110)
T ss_dssp CSSEEEECSC--CCSSCC---------HHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEeCC--CcccCC---------HHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 3469999999 554 32 3589999999999999999 569999999999999999999999999999
Q ss_pred EEEEEeecCC
Q 009565 497 QIHASEDDGL 506 (532)
Q Consensus 497 ~I~V~~~dg~ 506 (532)
+|+|.++...
T Consensus 91 ~l~V~~a~~~ 100 (110)
T 1wf1_A 91 TLDINMAGEP 100 (110)
T ss_dssp ECCEEESCCC
T ss_pred EEEEEECCCC
Confidence 9999998753
No 320
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=2.6e-11 Score=104.91 Aligned_cols=78 Identities=17% Similarity=0.318 Sum_probs=67.6
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcEe-
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWF- 493 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~f- 493 (532)
.+++|+|.|| |..+. .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+||..|||..|
T Consensus 24 ~~~~l~V~nl--p~~~t---------~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 92 (114)
T 1x5o_A 24 DPTNLYISNL--PLSMD---------EQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIK 92 (114)
T ss_dssp CTTEEEEESC--CTTCC---------HHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCC
T ss_pred CCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEc
Confidence 4579999999 55542 3489999999999999999875 5679999999999999999999999999
Q ss_pred -------CCeEEEEEeecCC
Q 009565 494 -------GGRQIHASEDDGL 506 (532)
Q Consensus 494 -------~GR~I~V~~~dg~ 506 (532)
.|++|.|.|++..
T Consensus 93 ~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 93 TPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCTTSCCCSSCBEEEECCCS
T ss_pred CCccccCCCCceeEEccCCC
Confidence 6888999998754
No 321
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.23 E-value=8e-12 Score=111.37 Aligned_cols=79 Identities=15% Similarity=0.274 Sum_probs=68.3
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeE--EEEecc----CCCcEEEEEeCCHHHHHHHHHHHCC
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDS--VKVCEN----HPQGVVLVRFKDRKDAQKCIELMNG 490 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~--V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnG 490 (532)
...++|||+|| |..+++ ++|+++|++||.|.. |+|+.+ +++|||||+|.+. +|.+||..|||
T Consensus 21 ~~~~~lfV~nL--~~~~te---------~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g 88 (131)
T 2m2b_A 21 NANDTIILRNL--NPHSTM---------DSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQA 88 (131)
T ss_dssp CCCCEEEECSC--CTTCCS---------HHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTT
T ss_pred CCCCEEEEeCC--CCCCCH---------HHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcC
Confidence 34569999999 555433 489999999999976 888865 5789999999999 99999999999
Q ss_pred c----EeCCeEEEEEeecCCc
Q 009565 491 R----WFGGRQIHASEDDGLV 507 (532)
Q Consensus 491 r----~f~GR~I~V~~~dg~~ 507 (532)
. .|+||+|.|.++.++.
T Consensus 89 ~~~~~~~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 89 LHPPLTIDGKTINVEFAKGSK 109 (131)
T ss_dssp CCCSCCGGGCCCCCEECCCSC
T ss_pred CCCCccCCCEEEEEEECCCCC
Confidence 9 9999999999998863
No 322
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.23 E-value=2.2e-11 Score=120.71 Aligned_cols=83 Identities=22% Similarity=0.305 Sum_probs=72.6
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHh-CCceecCC
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLL-DGTPFRPD 366 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~L-nG~~l~~G 366 (532)
+++|||+|||+.+|+++|+++|++||.|.. |.|+++ .+|.++|||||+|.+.++|.+||..| +|..+..+
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~--------v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 166 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEK--------AVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTT 166 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSS
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEE--------EEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecC
Confidence 578999999999999999999999999996 999999 68999999999999999999999999 45555433
Q ss_pred CCeeEEEeccccc
Q 009565 367 GKIPMSVTQAKFE 379 (532)
Q Consensus 367 ~~~~I~V~~A~~~ 379 (532)
..++|.|.++...
T Consensus 167 ~~r~i~v~~~~~~ 179 (261)
T 3sde_A 167 TPRPVIVEPMEQF 179 (261)
T ss_dssp SCCBCEEEECCCE
T ss_pred CCceEEEeecccc
Confidence 3478899887654
No 323
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.22 E-value=9.4e-12 Score=99.74 Aligned_cols=72 Identities=14% Similarity=0.219 Sum_probs=63.0
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCC
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGG 495 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G 495 (532)
++|+|+|| |..... ++|+++|++||.|..|.++.+ .++|+|||+|.+.++|.+|+..|| ..++|
T Consensus 1 ~~l~v~nl--p~~~t~---------~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g 68 (77)
T 1uaw_A 1 CKMFIGGL--SWQTTQ---------EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDS 68 (77)
T ss_dssp CCEEEESC--CSSCCS---------HHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSS
T ss_pred CEEEEeCC--CCCCCH---------HHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCC
Confidence 36899999 655533 489999999999999999865 568999999999999999999999 99999
Q ss_pred eEEEEEee
Q 009565 496 RQIHASED 503 (532)
Q Consensus 496 R~I~V~~~ 503 (532)
++|.|.++
T Consensus 69 ~~l~v~~a 76 (77)
T 1uaw_A 69 KTIDPKVA 76 (77)
T ss_dssp CCCEEEEC
T ss_pred EEEEEEec
Confidence 99999874
No 324
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=2.4e-11 Score=104.17 Aligned_cols=80 Identities=16% Similarity=0.205 Sum_probs=68.3
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCC-eeEEEEe-cc----CCCcEEEEEeCCHHHHHHHHHHHC--
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGP-VDSVKVC-EN----HPQGVVLVRFKDRKDAQKCIELMN-- 489 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~-V~~V~l~-~~----~~kG~aFV~F~s~eeA~kAi~~Ln-- 489 (532)
..++|||.|| |..+. .++|+++|++||. |..|.++ .+ +++|||||+|.+.++|.+|+..||
T Consensus 7 ~~~~l~V~nL--p~~~t---------~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g 75 (109)
T 2dis_A 7 GNCRLFIGGI--PKMKK---------REEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPG 75 (109)
T ss_dssp CSEEEEEECC--CTTSC---------HHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTC
T ss_pred CCCEEEEeCC--CCcCC---------HHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCC
Confidence 4579999999 55542 3589999999998 9999987 33 578999999999999999999996
Q ss_pred CcEeCCeEEEEEeecCCcc
Q 009565 490 GRWFGGRQIHASEDDGLVN 508 (532)
Q Consensus 490 Gr~f~GR~I~V~~~dg~~~ 508 (532)
+..|+|++|+|.++..+..
T Consensus 76 ~~~~~g~~l~V~~a~~~~~ 94 (109)
T 2dis_A 76 RIQLWGHQIAVDWAEPEID 94 (109)
T ss_dssp CSCBTTBCCEEEESCSSCS
T ss_pred CceecCCeEEEEEcCCCCC
Confidence 5899999999999987643
No 325
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.21 E-value=2.8e-11 Score=100.16 Aligned_cols=76 Identities=12% Similarity=0.191 Sum_probs=66.3
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeE
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQ 497 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~ 497 (532)
..++|+|.|| |.... .++|+++|++| .|..|.+. +++|||||+|.+.++|.+|+..|||..|+||+
T Consensus 4 ~~~~l~V~nL--p~~~t---------~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 69 (88)
T 1wg1_A 4 GSSGILVKNL--PQDSN---------CQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKD 69 (88)
T ss_dssp CCCCEEEESC--CSSCC---------HHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEE
T ss_pred CCCEEEEeCC--CCCCC---------HHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 3568999999 55543 35899999999 99999985 67899999999999999999999999999999
Q ss_pred EEEEeecCCc
Q 009565 498 IHASEDDGLV 507 (532)
Q Consensus 498 I~V~~~dg~~ 507 (532)
|+|.++....
T Consensus 70 l~V~~a~~~~ 79 (88)
T 1wg1_A 70 LIVQLQPTDA 79 (88)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEcCCCc
Confidence 9999986653
No 326
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.21 E-value=3.7e-11 Score=119.65 Aligned_cols=77 Identities=21% Similarity=0.308 Sum_probs=68.9
Q ss_pred CCCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 286 KVNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 286 ~~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
..+++|||+|||.++|+++|+++|++||.|.. |+|+.++ +|||||+|.+.++|.+||..|||..|..
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~--------v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~ 271 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKE--------VRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQ 271 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEE--------EEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCC
Confidence 45789999999999999999999999999996 9998763 6899999999999999999999999952
Q ss_pred CCCeeEEEeccc
Q 009565 366 DGKIPMSVTQAK 377 (532)
Q Consensus 366 G~~~~I~V~~A~ 377 (532)
+ +.|+|.+++
T Consensus 272 -g-~~l~v~~ak 281 (282)
T 3pgw_A 272 -N-NAMKISFAK 281 (282)
T ss_pred -C-CEEEEEEec
Confidence 3 678998875
No 327
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=3.3e-11 Score=104.69 Aligned_cols=77 Identities=12% Similarity=0.193 Sum_probs=67.4
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCC
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGG 495 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G 495 (532)
++|||.|| |..+. .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+||.. ||..|+|
T Consensus 28 ~~l~V~nL--p~~~t---------e~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g 95 (116)
T 1x4b_A 28 RKLFIGGL--SFETT---------EESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG 95 (116)
T ss_dssp TEEEEECC--TTCCC---------HHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT
T ss_pred CEEEEeCC--CCCCC---------HHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC
Confidence 58999999 55543 3489999999999999999865 5689999999999999999998 9999999
Q ss_pred eEEEEEeecCCcc
Q 009565 496 RQIHASEDDGLVN 508 (532)
Q Consensus 496 R~I~V~~~dg~~~ 508 (532)
++|+|.++..+..
T Consensus 96 ~~l~V~~a~~~~~ 108 (116)
T 1x4b_A 96 RVVEPKRAVAREE 108 (116)
T ss_dssp EEEEEECCSSCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999877643
No 328
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.21 E-value=3.7e-11 Score=103.79 Aligned_cols=77 Identities=13% Similarity=0.157 Sum_probs=65.6
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
.+++|||+|| |..+. .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+||..| |..|
T Consensus 24 ~~~~lfV~nL--p~~~t---------e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l 91 (109)
T 2rs2_A 24 SGCKMFIGGL--SWQTT---------QEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHEL 91 (109)
T ss_dssp --CCEEEESC--CTTCC---------HHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEE
T ss_pred CCCEEEEeCC--CCCCC---------HHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcC
Confidence 4569999999 55543 3589999999999999999865 56899999999999999999986 5999
Q ss_pred CCeEEEEEeecCC
Q 009565 494 GGRQIHASEDDGL 506 (532)
Q Consensus 494 ~GR~I~V~~~dg~ 506 (532)
+||.|.|.++..+
T Consensus 92 ~g~~l~V~~a~~~ 104 (109)
T 2rs2_A 92 DSKTIDPKVAFPR 104 (109)
T ss_dssp TTEEEEEEECCCC
T ss_pred CCEEEEEEEccCC
Confidence 9999999998765
No 329
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.20 E-value=1.6e-11 Score=120.98 Aligned_cols=76 Identities=21% Similarity=0.294 Sum_probs=68.0
Q ss_pred CCCcEEEEECCCCCC---------CHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHH
Q 009565 286 KVNTHVYVTGLPDDV---------TVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQ 356 (532)
Q Consensus 286 ~~~~~VyV~nLP~~v---------TeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~ 356 (532)
..+++|||+|||.++ |+++|+++|++||.|.+ |+|+. ++|||||+|.+.++|..|+.
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~--------v~v~~------~kG~AFV~F~~~~~Ae~A~~ 197 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDR--------IRYVE------SKNCGFVKFKYQANAEFAKE 197 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEE--------EEEEG------GGTEEEEEESSHHHHHHHHH
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEE--------EEEEC------CCCEEEEEeCCHHHHHHHHH
Confidence 467999999999998 79999999999999997 99885 48999999999999999999
Q ss_pred HhCCcee------------cCCCCeeEEEecccc
Q 009565 357 LLDGTPF------------RPDGKIPMSVTQAKF 378 (532)
Q Consensus 357 ~LnG~~l------------~~G~~~~I~V~~A~~ 378 (532)
.|+|..| . | +.|.|..|..
T Consensus 198 am~g~~l~~~~~~e~~~~~~-g--r~L~V~wA~~ 228 (240)
T 3u1l_A 198 AMSNQTLLLPSDKEWDDRRE-G--TGLLVKWANE 228 (240)
T ss_dssp HHTTCCCCCTTSTTGGGGGG-S--CCCEEEECC-
T ss_pred HhCCCEEeccccccccccCC-C--CEEEEEEccC
Confidence 9999999 3 4 5688988873
No 330
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=4.9e-11 Score=104.50 Aligned_cols=76 Identities=9% Similarity=0.143 Sum_probs=64.5
Q ss_pred CcEEEEe--cccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEe---
Q 009565 419 PATVILR--FMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWF--- 493 (532)
Q Consensus 419 ~~~v~i~--Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f--- 493 (532)
.++|+|+ || +.... .++|+++|++||.|.+|.|+. .+|||||+|.+.++|.+|+..|||+.|
T Consensus 25 t~~L~V~Ng~L--~~~~t---------e~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~ 91 (114)
T 2cq2_A 25 TQSLVVANGGL--GNGVS---------RNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDD 91 (114)
T ss_dssp CSEEEEETCTG--GGTCC---------HHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred CCEEEEECCCC--CCCCC---------HHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccc
Confidence 4689994 48 33332 358999999999999999876 469999999999999999999999998
Q ss_pred --CCeEEEEEeecCCc
Q 009565 494 --GGRQIHASEDDGLV 507 (532)
Q Consensus 494 --~GR~I~V~~~dg~~ 507 (532)
.|++|.|.|.....
T Consensus 92 lg~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 92 LGQKITLYLNFVEKVQ 107 (114)
T ss_dssp TSCEEECEEEEESCCC
T ss_pred cCCCcEEEEEecccCc
Confidence 79999999987653
No 331
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=4.4e-11 Score=102.26 Aligned_cols=78 Identities=17% Similarity=0.205 Sum_probs=66.3
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeE-EEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcE
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDS-VKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRW 492 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~-V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~ 492 (532)
...++|+|+|| |.... .++|+++|++||.|.. |.|+.+ +++|||||+|.+.++|.+||.. ||..
T Consensus 13 ~~~~~l~V~nL--p~~~t---------e~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~ 80 (104)
T 1wg5_A 13 ANDGFVRLRGL--PFGCS---------KEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKER 80 (104)
T ss_dssp SCCCEEEEESC--CTTCC---------HHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCC
T ss_pred CCCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-Ccch
Confidence 45679999999 55542 3589999999999987 777643 6789999999999999999998 9999
Q ss_pred eCCeEEEEEeecCC
Q 009565 493 FGGRQIHASEDDGL 506 (532)
Q Consensus 493 f~GR~I~V~~~dg~ 506 (532)
|+||.|.|.+...+
T Consensus 81 ~~gr~i~v~~~~~~ 94 (104)
T 1wg5_A 81 IGHRYIEIFKSSRA 94 (104)
T ss_dssp SSSSCCEEEEECTT
T ss_pred hCCcEEEEEECCHH
Confidence 99999999887654
No 332
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=4e-11 Score=104.25 Aligned_cols=78 Identities=22% Similarity=0.239 Sum_probs=66.6
Q ss_pred CCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCe-eEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCc
Q 009565 416 LTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPV-DSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGR 491 (532)
Q Consensus 416 ~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V-~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr 491 (532)
....++|+|.|| |..++ .++|+++|++||.| ..|.|+.+ +++|||||+|.+.++|.+||.. ||.
T Consensus 12 ~~~~~~l~V~nL--p~~~t---------~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~ 79 (114)
T 2cpy_A 12 NSAKVCAHITNI--PFSIT---------KMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRK 79 (114)
T ss_dssp CSCCCEEEEESC--CTTSC---------HHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSE
T ss_pred CCCccEEEEeCc--CCcCC---------HHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCC
Confidence 344579999999 55543 35899999999999 88888764 5789999999999999999987 999
Q ss_pred EeCCeEEEEEeecC
Q 009565 492 WFGGRQIHASEDDG 505 (532)
Q Consensus 492 ~f~GR~I~V~~~dg 505 (532)
.|+||.|.|.++..
T Consensus 80 ~~~gr~i~v~~a~~ 93 (114)
T 2cpy_A 80 KLNGREAFVHVVTL 93 (114)
T ss_dssp EETTEEEEEEEECH
T ss_pred ccCCeEEEEEECCH
Confidence 99999999988754
No 333
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.19 E-value=6.9e-11 Score=105.89 Aligned_cols=74 Identities=12% Similarity=0.098 Sum_probs=63.8
Q ss_pred EEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcE-EEEEeCCHHHHHHHHHHHCCcEeCC--eE
Q 009565 421 TVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGV-VLVRFKDRKDAQKCIELMNGRWFGG--RQ 497 (532)
Q Consensus 421 ~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~-aFV~F~s~eeA~kAi~~LnGr~f~G--R~ 497 (532)
.|+|.|| +..++ .++|+++|++||.|.+|+++++ ++|+ |||+|.+.++|.+|++.|||+.|.| ++
T Consensus 30 ~I~V~NL--~~~vt---------e~~L~~lFs~yG~V~~V~i~~~-~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~ 97 (130)
T 3zzy_A 30 RIIVENL--FYPVT---------LDVLHQIFSKFGTVLKIITFTK-NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCT 97 (130)
T ss_dssp EEEEESC--CSCCC---------HHHHHHHHTTSSCEEEEEEEEE-TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEE
T ss_pred EEEECCC--CCCCC---------HHHHHHHHhCcCCEEEEEEEcC-CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcE
Confidence 6779999 44432 2479999999999999999875 4688 9999999999999999999999988 99
Q ss_pred EEEEeecCC
Q 009565 498 IHASEDDGL 506 (532)
Q Consensus 498 I~V~~~dg~ 506 (532)
|+|.|+..+
T Consensus 98 LrI~~ak~~ 106 (130)
T 3zzy_A 98 LRIDFSKLT 106 (130)
T ss_dssp EEEEECSCS
T ss_pred EEEEecCCC
Confidence 999998764
No 334
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=9.5e-11 Score=99.47 Aligned_cols=78 Identities=22% Similarity=0.306 Sum_probs=66.7
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
..++|||.|| |..+. .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+||. ++..|
T Consensus 14 ~~~~l~v~nl--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~ 80 (103)
T 2cqg_A 14 KTSDLIVLGL--PWKTT---------EQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMI 80 (103)
T ss_dssp CCCCEEEESC--CSSCC---------HHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEE
T ss_pred CCCEEEEEcC--CCcCC---------HHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCee
Confidence 4568999999 55542 3589999999999999999865 458999999999999999998 58899
Q ss_pred CCeEEEEEeecCCcc
Q 009565 494 GGRQIHASEDDGLVN 508 (532)
Q Consensus 494 ~GR~I~V~~~dg~~~ 508 (532)
+|++|.|.++..+..
T Consensus 81 ~g~~l~v~~a~~~~~ 95 (103)
T 2cqg_A 81 DGRWCDCKLPNSKQS 95 (103)
T ss_dssp TTEEEEEECCCTTCC
T ss_pred CCeEEEEEecCCCCc
Confidence 999999999887643
No 335
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.18 E-value=3e-11 Score=105.92 Aligned_cols=75 Identities=20% Similarity=0.188 Sum_probs=65.2
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCC---eeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCc
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGP---VDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGR 491 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~---V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr 491 (532)
..++|+|+|| |...+ .++|+++|++||. |..|.|+.+ +++|||||+|.+.++|.+||. |||.
T Consensus 16 ~~~~l~V~nL--p~~~t---------e~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~ 83 (118)
T 2db1_A 16 EGYVVKLRGL--PWSCS---------IEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRE 83 (118)
T ss_dssp CCCEEEEESC--CTTCC---------HHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTE
T ss_pred CCcEEEEeCC--CCCCC---------HHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCC
Confidence 4568999999 55543 3589999999999 899998754 678999999999999999999 9999
Q ss_pred EeCCeEEEEEeec
Q 009565 492 WFGGRQIHASEDD 504 (532)
Q Consensus 492 ~f~GR~I~V~~~d 504 (532)
.|+||.|+|.++.
T Consensus 84 ~~~gr~i~V~~a~ 96 (118)
T 2db1_A 84 SMGHRYIEVFKSH 96 (118)
T ss_dssp EETTEEEEEEEEC
T ss_pred eECCeEEEEEECC
Confidence 9999999998864
No 336
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.18 E-value=8.9e-11 Score=104.40 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=62.7
Q ss_pred EEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcE-EEEEeCCHHHHHHHHHHHCCcEeCC--eE
Q 009565 421 TVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGV-VLVRFKDRKDAQKCIELMNGRWFGG--RQ 497 (532)
Q Consensus 421 ~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~-aFV~F~s~eeA~kAi~~LnGr~f~G--R~ 497 (532)
.|+|.|| +..+. .++|+++|++||.|.+|+|++. .|| |||+|.+.++|.+|+..|||..|.| ++
T Consensus 27 ~l~V~NL--~~~vt---------~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~ 93 (124)
T 2e5i_A 27 LLSIQNP--LYPIT---------VDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAGCCT 93 (124)
T ss_dssp EEEEESC--CSCCC---------HHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSE
T ss_pred EEEEcCc--CCCCC---------HHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeE
Confidence 4678999 44432 2489999999999999999874 396 9999999999999999999999977 79
Q ss_pred EEEEeecCC
Q 009565 498 IHASEDDGL 506 (532)
Q Consensus 498 I~V~~~dg~ 506 (532)
|+|.|+..+
T Consensus 94 l~V~~Ak~~ 102 (124)
T 2e5i_A 94 LKIEYARPT 102 (124)
T ss_dssp EEEECCSCS
T ss_pred EEEEEecCC
Confidence 999998876
No 337
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.18 E-value=5.6e-11 Score=107.14 Aligned_cols=78 Identities=14% Similarity=0.193 Sum_probs=65.9
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEE--------EEe-ccCCCcEEEEEeCCHHHHHHHHHHH
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSV--------KVC-ENHPQGVVLVRFKDRKDAQKCIELM 488 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V--------~l~-~~~~kG~aFV~F~s~eeA~kAi~~L 488 (532)
..++|||+|| |..++ .++|+.+|++||.|..| .+. ..+++|||||+|.+.++|.+||..|
T Consensus 44 ~~~~l~V~nL--p~~~t---------e~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 112 (143)
T 3egn_A 44 PNCRIYVKNL--AKHVQ---------EKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEA 112 (143)
T ss_dssp CCSEEEEEEE--CTTCC---------HHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHH
T ss_pred CCCEEEEeCC--CCCCC---------HHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHh
Confidence 4569999999 55543 34899999999998763 333 3478999999999999999999999
Q ss_pred CCcEeCCeEEEEEeecCC
Q 009565 489 NGRWFGGRQIHASEDDGL 506 (532)
Q Consensus 489 nGr~f~GR~I~V~~~dg~ 506 (532)
||..|.|++|.|.++...
T Consensus 113 ng~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 113 NGYVLFGKPMVVQFARSA 130 (143)
T ss_dssp TTBEETTEECEEEECCCS
T ss_pred CCCEeCCcEEEEEECCCC
Confidence 999999999999998765
No 338
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=7.4e-11 Score=99.85 Aligned_cols=81 Identities=15% Similarity=0.131 Sum_probs=63.4
Q ss_pred CCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEe-ccCCCcEEEEEeCCHHHHHHHHHHHCCcEeC
Q 009565 416 LTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVC-ENHPQGVVLVRFKDRKDAQKCIELMNGRWFG 494 (532)
Q Consensus 416 ~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~-~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~ 494 (532)
....++|||.|| |..+. .++|+++|+.|+.|.-+... ..+++|||||+|.+.++|.+||..|||..|+
T Consensus 12 ~~~~~~l~V~nL--p~~~t---------~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2fc8_A 12 SQPSKTLFVKGL--SEDTT---------EETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 80 (102)
T ss_dssp SCCCSSEEEECC--CTTCC---------HHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCC--CCccC---------HHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 345679999999 55542 35889999988644322211 2256799999999999999999999999999
Q ss_pred CeEEEEEeecCCc
Q 009565 495 GRQIHASEDDGLV 507 (532)
Q Consensus 495 GR~I~V~~~dg~~ 507 (532)
|+.|.|.++..+.
T Consensus 81 g~~l~V~~a~~~~ 93 (102)
T 2fc8_A 81 GNKVTLDWAKPKG 93 (102)
T ss_dssp TEECEEEECCCCC
T ss_pred CeEEEEEEecCCC
Confidence 9999999987753
No 339
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.16 E-value=5.1e-11 Score=105.19 Aligned_cols=75 Identities=12% Similarity=0.155 Sum_probs=65.7
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeE
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQ 497 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~ 497 (532)
..++|||.|+ ++ ..++|+++|++||.|..|.|. .++|||||+|.+.++|.+||..|||..|+|++
T Consensus 38 ~~~~lfVgnl----~~---------te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~ 102 (121)
T 2bz2_A 38 KGNTLYVYGE----DM---------TPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQ 102 (121)
T ss_dssp CCCEEEEECS----SC---------CHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCEEEEcCC----CC---------CHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 4569999995 12 235899999999999999996 57799999999999999999999999999999
Q ss_pred EEEEeecCCc
Q 009565 498 IHASEDDGLV 507 (532)
Q Consensus 498 I~V~~~dg~~ 507 (532)
|.|.++..+.
T Consensus 103 l~V~~a~~~~ 112 (121)
T 2bz2_A 103 LKVNIARKQP 112 (121)
T ss_dssp CEEEECCSSC
T ss_pred EEEEEeCCCC
Confidence 9999987753
No 340
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=4.3e-11 Score=102.33 Aligned_cols=79 Identities=18% Similarity=0.181 Sum_probs=65.5
Q ss_pred CCCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCc
Q 009565 415 KLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGR 491 (532)
Q Consensus 415 ~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr 491 (532)
.+...++|+|.|| |...+ .++|+++|++||.| .|.|+.+ +++|||||+|.+.++|.+||. ||+.
T Consensus 11 ~~~~~~~l~V~nL--p~~~t---------e~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~ 77 (102)
T 1wez_A 11 QSTTGHCVHMRGL--PYRAT---------ENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKA 77 (102)
T ss_dssp CCSSSCEEEEESC--CTTCC---------HHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSC
T ss_pred CCCCCCEEEEeCC--CCCCC---------HHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCC
Confidence 3345679999999 55543 35899999999955 8988755 578999999999999999994 7999
Q ss_pred EeCCeEEEEEeecCC
Q 009565 492 WFGGRQIHASEDDGL 506 (532)
Q Consensus 492 ~f~GR~I~V~~~dg~ 506 (532)
.|+||.|+|......
T Consensus 78 ~~~gr~i~V~~~~~~ 92 (102)
T 1wez_A 78 NMQHRYVELFLNSTA 92 (102)
T ss_dssp CSSSSCCEEEEECCC
T ss_pred eECCcEEEEEECCCC
Confidence 999999999887654
No 341
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.15 E-value=7.8e-11 Score=102.71 Aligned_cols=74 Identities=18% Similarity=0.274 Sum_probs=62.6
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeE
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQ 497 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~ 497 (532)
...+|||.|| |..+.. ++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||..|||..|+|++
T Consensus 15 ~~~~l~V~nL--p~~~t~---------~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 15 SENRVVVSGL--PPSGSW---------QDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp --CCEEEEEC--CSSCCT---------THHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCcEEEEeCC--CCCCCH---------HHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3468999999 555533 388999999999999999876 99999999999999999999999999998
Q ss_pred -----EEEEeecC
Q 009565 498 -----IHASEDDG 505 (532)
Q Consensus 498 -----I~V~~~dg 505 (532)
|.|.....
T Consensus 81 ~~~~~i~v~~~~~ 93 (115)
T 3beg_B 81 GETAYIRVKVDGP 93 (115)
T ss_dssp SCCCBCEEEECC-
T ss_pred eeeEEEEeccCCC
Confidence 77766554
No 342
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.15 E-value=3.1e-11 Score=103.73 Aligned_cols=77 Identities=17% Similarity=0.193 Sum_probs=65.8
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCC---eeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCC
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGP---VDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNG 490 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~---V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnG 490 (532)
....+|+|+|| |...+. ++|+++|+.||. |..|.|+.+ +++|||||+|.+.++|.+||. |||
T Consensus 9 ~~~~~l~V~nL--p~~~te---------~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~ 76 (107)
T 2lmi_A 9 DDVFLIRAQGL--PWSCTM---------EDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHR 76 (107)
T ss_dssp SSCCEEEEECC--CSSCCS---------HHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTT
T ss_pred CCccEEEEeCC--CCCCCH---------HHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCc
Confidence 45679999999 555433 489999999888 899998765 678999999999999999999 999
Q ss_pred cEeCCeEEEEEeecC
Q 009565 491 RWFGGRQIHASEDDG 505 (532)
Q Consensus 491 r~f~GR~I~V~~~dg 505 (532)
..|+||.|.|.++..
T Consensus 77 ~~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 77 MYMGQRYVEVYEINN 91 (107)
T ss_dssp CCSSSSCCCCEECCH
T ss_pred ceeCCeEEEEEECCH
Confidence 999999999977653
No 343
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.15 E-value=2e-11 Score=103.38 Aligned_cols=77 Identities=16% Similarity=0.258 Sum_probs=64.2
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEec---cCCCcEEEEEeCCHHHHHHHHHHHCCcEeC
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCE---NHPQGVVLVRFKDRKDAQKCIELMNGRWFG 494 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~---~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~ 494 (532)
.+++|||.|| |..++ .++|+++|++||.|..+.+.+ ..++|||||+|.+.++|.+||+ |||..|.
T Consensus 16 ~~~~l~V~nL--p~~~t---------~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~ 83 (101)
T 1fj7_A 16 TPFNLFIGNL--NPNKS---------VAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF 83 (101)
T ss_dssp CSEEEEEECC--CTTSC---------HHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT
T ss_pred CCCEEEEeCC--CCCCC---------HHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC
Confidence 4679999999 55543 358999999999887732222 3679999999999999999999 9999999
Q ss_pred CeEEEEEeecCC
Q 009565 495 GRQIHASEDDGL 506 (532)
Q Consensus 495 GR~I~V~~~dg~ 506 (532)
|+.|.|.++..+
T Consensus 84 g~~l~V~~a~~~ 95 (101)
T 1fj7_A 84 GNEIKLEKPKGR 95 (101)
T ss_dssp TBCCEEECCSCC
T ss_pred CcEEEEEEcCCC
Confidence 999999998765
No 344
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.14 E-value=4.5e-11 Score=107.91 Aligned_cols=76 Identities=18% Similarity=0.162 Sum_probs=65.5
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCC---eeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCC
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGP---VDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNG 490 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~---V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnG 490 (532)
...++|+|+|| |...+ .++|++.|++||. |..|.|+.+ +++|||||+|.+.++|.+||. |||
T Consensus 42 ~~~~~lfVgnL--p~~~t---------e~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g 109 (136)
T 2hgl_A 42 GEGFVVKLRGL--PWSCS---------VEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDR 109 (136)
T ss_dssp CTTCEEEEESC--CTTCC---------HHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTE
T ss_pred CCCCEEEEeCC--CCCCC---------HHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCC
Confidence 34579999999 55543 3589999999999 889998754 678999999999999999999 999
Q ss_pred cEeCCeEEEEEeec
Q 009565 491 RWFGGRQIHASEDD 504 (532)
Q Consensus 491 r~f~GR~I~V~~~d 504 (532)
..|+||.|.|.++.
T Consensus 110 ~~l~gr~i~V~~a~ 123 (136)
T 2hgl_A 110 ESMGHRYIEVFKSH 123 (136)
T ss_dssp EESSSSEEEEEECC
T ss_pred CEECCEEEEEEECC
Confidence 99999999997753
No 345
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.14 E-value=9.1e-11 Score=110.38 Aligned_cols=82 Identities=21% Similarity=0.293 Sum_probs=70.8
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
...++|||.|| |..+. .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+||..|||..|
T Consensus 86 ~~~~~l~V~nL--p~~~t---------e~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l 154 (177)
T 2f3j_A 86 ETGAKLLVSNL--DFGVS---------DADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL 154 (177)
T ss_dssp TTCEEEEEECC--CSCCC---------HHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBC
T ss_pred CCCCEEEEeCC--CCCCC---------HHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 34579999999 55542 3589999999999999999864 5789999999999999999999999999
Q ss_pred CCeEEEEEeecCCccc
Q 009565 494 GGRQIHASEDDGLVNH 509 (532)
Q Consensus 494 ~GR~I~V~~~dg~~~~ 509 (532)
+|++|+|.++.....+
T Consensus 155 ~Gr~l~V~~a~~~~~~ 170 (177)
T 2f3j_A 155 DGRPMDIQLVASQIDL 170 (177)
T ss_dssp SSSBCEEEEESSGGGG
T ss_pred CCEEEEEEEecCCCCC
Confidence 9999999998876444
No 346
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=1.3e-10 Score=100.86 Aligned_cols=72 Identities=24% Similarity=0.257 Sum_probs=62.8
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCe
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFGGR 496 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR 496 (532)
.+|+|+|| |...+ .++|+++|+.| .|..|.|+.+ +++|||||+|.+.++|.+|| .|||..|+||
T Consensus 17 ~~v~V~nL--p~~~t---------e~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr 83 (109)
T 2dnn_A 17 LYVSVHGM--PFSAM---------ENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQR 83 (109)
T ss_dssp HEEEEECC--CSSCC---------HHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTE
T ss_pred CEEEEeCC--CCCCC---------HHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCe
Confidence 58999999 55543 35899999999 8999999854 67899999999999999999 6999999999
Q ss_pred EEEEEeec
Q 009565 497 QIHASEDD 504 (532)
Q Consensus 497 ~I~V~~~d 504 (532)
.|+|....
T Consensus 84 ~i~V~~a~ 91 (109)
T 2dnn_A 84 YVEVSPAT 91 (109)
T ss_dssp EEEEEECC
T ss_pred EEEEEECC
Confidence 99997764
No 347
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=1.2e-10 Score=97.43 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=62.5
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeE
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQ 497 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~ 497 (532)
..++|||.|| |.... .++|+++|++||.|.+|.+.....+ ||||+|.+.++|.+||. |||..|+|+.
T Consensus 7 ~~~~l~V~nl--~~~~t---------~~~l~~~F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~ 73 (94)
T 2e5g_A 7 GLRSVFVSGF--PRGVD---------SAQLSEYFLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHR 73 (94)
T ss_dssp TCCEEEEECC--CTTCC---------HHHHHHHGGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEE
T ss_pred CCCEEEEECC--CCCCC---------HHHHHHHHHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEE
Confidence 4569999999 55542 3589999999999999833333333 99999999999999999 9999999999
Q ss_pred EEEEeecCC
Q 009565 498 IHASEDDGL 506 (532)
Q Consensus 498 I~V~~~dg~ 506 (532)
|.|.++..+
T Consensus 74 l~V~~a~~~ 82 (94)
T 2e5g_A 74 LRVRPREQK 82 (94)
T ss_dssp CCCBCSCCS
T ss_pred EEEEECCcC
Confidence 999877654
No 348
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.13 E-value=4.2e-11 Score=117.23 Aligned_cols=77 Identities=17% Similarity=0.254 Sum_probs=66.8
Q ss_pred CcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccC--CeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcE
Q 009565 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIG--PVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRW 492 (532)
Q Consensus 419 ~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG--~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~ 492 (532)
.++|||.|| +..++ .++|+++|++|| .|.+|.|+.+ +++|||||+|.+.++|.+||..|||..
T Consensus 68 ~~~lfVgnL--~~~~t---------e~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~ 136 (229)
T 3q2s_C 68 RIALYIGNL--TWWTT---------DEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRE 136 (229)
T ss_dssp -CEEEEESC--CTTCC---------HHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSC
T ss_pred ccEEEEeCC--CCCCC---------HHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCe
Confidence 458999999 55442 358999999999 9999999865 578999999999999999999999999
Q ss_pred eCCeEEEEEeecCC
Q 009565 493 FGGRQIHASEDDGL 506 (532)
Q Consensus 493 f~GR~I~V~~~dg~ 506 (532)
|.||.|+|.++...
T Consensus 137 ~~Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 137 LHGQNPVVTPVNKQ 150 (229)
T ss_dssp BTTBCCEEEECCHH
T ss_pred ECCEEeEEEECCCC
Confidence 99999999987643
No 349
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=3.7e-11 Score=105.90 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=63.2
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEE-Eec---cCCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVK-VCE---NHPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~-l~~---~~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
...+|||.|| |...+ .++|+++|++||.|..+. +.+ .+++|||||+|.+.++|.+||. |||..|
T Consensus 24 ~~~~l~V~nL--p~~~t---------e~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~ 91 (124)
T 1wel_A 24 AGFCVYLKGL--PFEAE---------NKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYM 91 (124)
T ss_dssp CCCEEEEECC--CTTCC---------HHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS
T ss_pred CCcEEEEeCC--CCCCC---------HHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeE
Confidence 4569999999 55543 358999999999998743 332 2678999999999999999999 999999
Q ss_pred CCeEEEEEeecC
Q 009565 494 GGRQIHASEDDG 505 (532)
Q Consensus 494 ~GR~I~V~~~dg 505 (532)
+||.|.|.++..
T Consensus 92 ~gr~i~V~~a~~ 103 (124)
T 1wel_A 92 GNRFIQVHPITK 103 (124)
T ss_dssp TTSCBEEEEECH
T ss_pred CCcEEEEEECCH
Confidence 999999988754
No 350
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.12 E-value=1.3e-10 Score=95.12 Aligned_cols=70 Identities=14% Similarity=0.357 Sum_probs=61.3
Q ss_pred CcEEEEecccCCcccCcchhhHHHHHHHHHHHhhcc----C-------CeeEEEEeccCCCcEEEEEeCCHHHHHHHHHH
Q 009565 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKI----G-------PVDSVKVCENHPQGVVLVRFKDRKDAQKCIEL 487 (532)
Q Consensus 419 ~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskf----G-------~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~ 487 (532)
+++|+|.|| |.... .++|+++|++| | .|.+|.+..+ +|||||+|.+.++|.+|+ .
T Consensus 6 ~~~l~V~nL--p~~~t---------~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~ 71 (87)
T 2hzc_A 6 ARRLYVGNI--PFGIT---------EEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-A 71 (87)
T ss_dssp GGEEEEESC--CTTCC---------HHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-G
T ss_pred CCEEEEeCC--CCCCC---------HHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-h
Confidence 569999999 55542 35899999999 8 9999998864 699999999999999999 9
Q ss_pred HCCcEeCCeEEEEEe
Q 009565 488 MNGRWFGGRQIHASE 502 (532)
Q Consensus 488 LnGr~f~GR~I~V~~ 502 (532)
|||..|+||+|+|..
T Consensus 72 l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 72 FDGIIFQGQSLKIRR 86 (87)
T ss_dssp GTTCEETTEECEEEC
T ss_pred cCCCEECCeEEEEeC
Confidence 999999999999963
No 351
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.10 E-value=2.4e-10 Score=95.19 Aligned_cols=74 Identities=22% Similarity=0.253 Sum_probs=59.4
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEe--C
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWF--G 494 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f--~ 494 (532)
..+.+|+|.|| |...+ .++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|.+ |+|..+ .
T Consensus 9 ~~~~~l~V~~L--p~~~t---------e~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~----~~~~~~~~~ 72 (89)
T 3d2w_A 9 HHGSKVFVGRC--TEDMT---------AEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQS----LCGEDLIIK 72 (89)
T ss_dssp --CCEEEEESC--CTTCC---------HHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHH----HTTCEEEET
T ss_pred CCCCEEEEeCC--CCCCC---------HHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHH----HcCCCcccC
Confidence 34579999999 55543 3589999999999999999875 78999999999999983 677654 5
Q ss_pred CeEEEEEeecCC
Q 009565 495 GRQIHASEDDGL 506 (532)
Q Consensus 495 GR~I~V~~~dg~ 506 (532)
|++|.|.++..+
T Consensus 73 g~~v~v~~a~~k 84 (89)
T 3d2w_A 73 GISVHISNAEPK 84 (89)
T ss_dssp TEEEEEEECC--
T ss_pred CEEEEEEEcCCC
Confidence 999999988765
No 352
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.10 E-value=3.2e-11 Score=96.25 Aligned_cols=71 Identities=15% Similarity=0.263 Sum_probs=61.1
Q ss_pred EEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCe
Q 009565 421 TVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKDRKDAQKCIELMNGRWFGGR 496 (532)
Q Consensus 421 ~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR 496 (532)
+|+|+|| |.... .++|++.|++||.|..|.++.+ .++|+|||+|.+.++|.+|+.. +|..++|+
T Consensus 1 ~l~v~nL--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~ 68 (75)
T 1iqt_A 1 KIFVGGL--SPDTP---------EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLS 68 (75)
T ss_dssp CEEESCC--CSSCC---------HHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTB
T ss_pred CEEEeCC--CCCCC---------HHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCE
Confidence 4899999 55543 3589999999999999999754 5789999999999999999985 99999999
Q ss_pred EEEEEee
Q 009565 497 QIHASED 503 (532)
Q Consensus 497 ~I~V~~~ 503 (532)
+|.|.++
T Consensus 69 ~l~v~~a 75 (75)
T 1iqt_A 69 KCEIKVA 75 (75)
T ss_dssp CCCEEEC
T ss_pred EEEEEEC
Confidence 9999763
No 353
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=3.1e-10 Score=98.33 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=64.4
Q ss_pred CCcEEEEECCCCCC-----------CHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHH
Q 009565 287 VNTHVYVTGLPDDV-----------TVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALAT 355 (532)
Q Consensus 287 ~~~~VyV~nLP~~v-----------TeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al 355 (532)
..++|+|.||.... ++++|+++|++||.|.. |.| .++ .++|||||+|.+.++|.+|+
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~--------v~i-~~~---~~~G~afV~f~~~~~A~~Ai 81 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRK--------LLL-FDR---HPDGVASVSFRDPEEADYCI 81 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSE--------EEE-ETT---CTTCEEEEECSCHHHHHHHH
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeE--------EEE-ecC---CCCEEEEEEECCHHHHHHHH
Confidence 45889999994433 25899999999999996 855 553 38999999999999999999
Q ss_pred HHhCCceecCCCCeeEEEecccc
Q 009565 356 QLLDGTPFRPDGKIPMSVTQAKF 378 (532)
Q Consensus 356 ~~LnG~~l~~G~~~~I~V~~A~~ 378 (532)
..|||..|. | ++|.|..+..
T Consensus 82 ~~lng~~~~-g--r~l~v~~a~~ 101 (112)
T 2dit_A 82 QTLDGRWFG-G--RQITAQAWDG 101 (112)
T ss_dssp HHSTTCEET-T--EECEEEECCS
T ss_pred HHcCCCEEC-C--cEEEEEEeCC
Confidence 999999996 5 6789988763
No 354
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.09 E-value=2.5e-11 Score=104.39 Aligned_cols=72 Identities=22% Similarity=0.313 Sum_probs=62.1
Q ss_pred EECCCCCCCHHHHHHHH------------hccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCC
Q 009565 293 VTGLPDDVTVEEMVEVF------------SKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDG 360 (532)
Q Consensus 293 V~nLP~~vTeeeL~elF------------sk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG 360 (532)
+.|||..+|+++|++.| ++||.|.+ |+|++++ +|+++|||||.|.+.++|.+|+..|||
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~--------v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng 90 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEE--------MNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNN 90 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEE--------EEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTT
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEE--------EEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCC
Confidence 56788888888887776 99999997 9999985 589999999999999999999999999
Q ss_pred ceecCCCCeeEEEecc
Q 009565 361 TPFRPDGKIPMSVTQA 376 (532)
Q Consensus 361 ~~l~~G~~~~I~V~~A 376 (532)
..|. | ++|.|..+
T Consensus 91 ~~~~-G--r~i~v~~s 103 (104)
T 1jmt_A 91 RWFN-G--QPIHAELS 103 (104)
T ss_dssp CEET-T--EECCEEEC
T ss_pred CEEC-C--EEEEEEEc
Confidence 9996 5 66777654
No 355
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.09 E-value=1.2e-10 Score=109.75 Aligned_cols=76 Identities=18% Similarity=0.279 Sum_probs=66.7
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccC-ccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCG-IIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G-~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
.+++|||+|||.++|+++|+++|++|| .|.. |+|+.+ .+|+|||+|.+.++|.+|+..|||..+..
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~--------v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 185 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKG--------FKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGE 185 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCE--------EEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceE--------EEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCC
Confidence 468999999999999999999999999 8986 888764 27999999999999999999999999952
Q ss_pred CCCeeEEEeccc
Q 009565 366 DGKIPMSVTQAK 377 (532)
Q Consensus 366 G~~~~I~V~~A~ 377 (532)
| ++|.|.+++
T Consensus 186 g--~~l~v~~a~ 195 (198)
T 1qm9_A 186 N--HHLRVSFSK 195 (198)
T ss_dssp C--CSCCEEEEC
T ss_pred C--CeEEEEeec
Confidence 3 567877765
No 356
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.09 E-value=1.8e-10 Score=99.26 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=67.1
Q ss_pred CcEEEEECC--CCCCC--------HHHHHHHHhccCccccCCCCCCCeEEEEecCCC--CCccccEEEEecCHHHHHHHH
Q 009565 288 NTHVYVTGL--PDDVT--------VEEMVEVFSKCGIIKEDPETKKPRIKIYVDKET--GMKKGDALVTYLKEPSVALAT 355 (532)
Q Consensus 288 ~~~VyV~nL--P~~vT--------eeeL~elFsk~G~I~~d~~~~~prikl~~d~~t--G~~kG~aFV~F~~~esA~~Al 355 (532)
.+.|.+.|+ |.++. +++|++.|++||.|.+ |+|++++.+ +.++|+|||+|.+.++|.+|+
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~--------v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai 76 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKS--------IEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAM 76 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEE--------EECCCCBTTBCCTTTTEEEEEESSHHHHHHHH
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEE--------EEEeccCCCCCcCCcEEEEEEECCHHHHHHHH
Confidence 377999998 44443 3689999999999997 999988654 368999999999999999999
Q ss_pred HHhCCceecCCCCeeEEEeccc
Q 009565 356 QLLDGTPFRPDGKIPMSVTQAK 377 (532)
Q Consensus 356 ~~LnG~~l~~G~~~~I~V~~A~ 377 (532)
..|||..|. | ++|.|..+.
T Consensus 77 ~~lnG~~f~-G--R~i~v~~~~ 95 (105)
T 3v4m_A 77 QGLTGRKFA-N--RVVVTKYCD 95 (105)
T ss_dssp HHHTTCEET-T--EECEEEEEC
T ss_pred HHhCCCEeC-C--CEEEEEEeC
Confidence 999999996 5 678888765
No 357
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.68 E-value=1e-11 Score=108.05 Aligned_cols=78 Identities=19% Similarity=0.328 Sum_probs=67.2
Q ss_pred CcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeE--------EEEecc----CCCcEEEEEeCCHHHHHHHHH
Q 009565 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDS--------VKVCEN----HPQGVVLVRFKDRKDAQKCIE 486 (532)
Q Consensus 419 ~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~--------V~l~~~----~~kG~aFV~F~s~eeA~kAi~ 486 (532)
.++|||.|| |..+ ..++|+++|++||.|.. |.|+.+ .++|||||+|.+.++|.+||.
T Consensus 7 ~~~l~V~nL--p~~~---------t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 75 (116)
T 2lcw_A 7 NNTIFVQGL--GENV---------TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAID 75 (116)
Confidence 468999999 5543 23589999999999998 777754 568999999999999999999
Q ss_pred HHCCcEeCCeEEEEEeecCCc
Q 009565 487 LMNGRWFGGRQIHASEDDGLV 507 (532)
Q Consensus 487 ~LnGr~f~GR~I~V~~~dg~~ 507 (532)
.|||..|.|++|+|.++..+.
T Consensus 76 ~l~g~~~~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 76 WFDGKEFSGNPIKVSFATRRA 96 (116)
Confidence 999999999999999987653
No 358
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.08 E-value=2.5e-10 Score=110.87 Aligned_cols=76 Identities=18% Similarity=0.271 Sum_probs=67.1
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccC-ccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCG-IIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G-~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
.+++|||+|||+++|+++|+++|++|| .|.. |+|+.+ .+|||||+|.+.++|.+||..|||..|..
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~--------v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~ 216 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKG--------FKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGE 216 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEE--------EEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeE--------EEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCC
Confidence 468999999999999999999999999 8986 888653 37999999999999999999999999952
Q ss_pred CCCeeEEEeccc
Q 009565 366 DGKIPMSVTQAK 377 (532)
Q Consensus 366 G~~~~I~V~~A~ 377 (532)
+ ++|.|.+++
T Consensus 217 -g-~~l~v~~a~ 226 (229)
T 2adc_A 217 -N-HHLRVSFSK 226 (229)
T ss_dssp -S-CBCEEEECS
T ss_pred -C-CeEEEEEec
Confidence 3 568888876
No 359
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.06 E-value=3.5e-10 Score=111.44 Aligned_cols=86 Identities=14% Similarity=0.208 Sum_probs=67.9
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEe----
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWF---- 493 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f---- 493 (532)
..++|||.|| +..+.....-...++++|+.+|++||.|.+|.|+. ++|||||+|.+.++|..|+..|||..|
T Consensus 133 ~~rtLfVgnL--~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 133 KNKTLYVGGI--DGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCEEEEECT--TGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred CCceeecCCC--ChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 4579999999 33321000001235789999999999999999986 469999999999999999999999999
Q ss_pred --------CCeEEEEEeecCCc
Q 009565 494 --------GGRQIHASEDDGLV 507 (532)
Q Consensus 494 --------~GR~I~V~~~dg~~ 507 (532)
.|+.|.|.++....
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp STTGGGGGGSCCCEEEECC---
T ss_pred cccccccCCCCEEEEEEccCCC
Confidence 89999999987653
No 360
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.06 E-value=2.2e-10 Score=102.06 Aligned_cols=104 Identities=11% Similarity=0.205 Sum_probs=73.5
Q ss_pred CcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc----CCCcEEEEEeCC----HHH----HHHHHH
Q 009565 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN----HPQGVVLVRFKD----RKD----AQKCIE 486 (532)
Q Consensus 419 ~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~----~~kG~aFV~F~s----~ee----A~kAi~ 486 (532)
+..|||.||+....... ....|+++|+.||.|.+|.++.+ .|+|||||+|.+ +++ |.+||.
T Consensus 2 p~kI~VgnL~~~~~~~t-------te~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~ 74 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNI-------QDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVR 74 (136)
T ss_dssp CCEEEEEESSSSCCCCC-------CHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHH
T ss_pred CcEEEEeCCCCCCCCCC-------CHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence 46899999944332211 23589999999999999999866 679999999996 433 899998
Q ss_pred --HHCCcEeCCeEEEEEeecCCcc-cccCCCHHHHHHHHHHHHhhh
Q 009565 487 --LMNGRWFGGRQIHASEDDGLVN-HAAIRDLDAEASRLEQFGAEL 529 (532)
Q Consensus 487 --~LnGr~f~GR~I~V~~~dg~~~-~~~~~~~~ee~~Rl~~~~~~l 529 (532)
.|||..|+||+|+|.+.+.-.. --....-+.+.+++++...-|
T Consensus 75 ~~~lng~~I~Gr~irV~ln~~g~~~~~~~~~i~~~~~~~~~~~~~~ 120 (136)
T 2j8a_A 75 KHESSGCFIMGFKFEVILNKHSILNNIISKFVEINVKKLQKLQENL 120 (136)
T ss_dssp HTTTTCEEETTEEEEEEECCTTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhhcCCeecCcEEEEEECcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999654321 111122244555666655555
No 361
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.04 E-value=4.1e-10 Score=99.22 Aligned_cols=79 Identities=20% Similarity=0.220 Sum_probs=67.3
Q ss_pred CcEEEEECCCC--C---CCHHHHHHHHhccCccccCCCCCCCeEEEEecCC----CCCccccEEEEecCHHHHHHHHHHh
Q 009565 288 NTHVYVTGLPD--D---VTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKE----TGMKKGDALVTYLKEPSVALATQLL 358 (532)
Q Consensus 288 ~~~VyV~nLP~--~---vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~----tG~~kG~aFV~F~~~esA~~Al~~L 358 (532)
.+.|++.|+-. + -.+++|++.|++||.|.+ |+|++++. ++.++|++||+|.+.++|.+|+..|
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~--------v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~L 91 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNR--------VIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL 91 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEE--------EEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeE--------EEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHH
Confidence 47899999942 2 236899999999999997 99999864 4678899999999999999999999
Q ss_pred CCceecCCCCeeEEEeccc
Q 009565 359 DGTPFRPDGKIPMSVTQAK 377 (532)
Q Consensus 359 nG~~l~~G~~~~I~V~~A~ 377 (532)
||..|. | +.|.|.++.
T Consensus 92 nGr~f~-G--R~i~v~~~~ 107 (118)
T 3ue2_A 92 NGRWFA-G--RKVVAEVYD 107 (118)
T ss_dssp TTCEET-T--EECEEEEEC
T ss_pred CCCEEC-C--cEEEEEEcC
Confidence 999996 5 678888765
No 362
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.03 E-value=1.9e-10 Score=97.39 Aligned_cols=78 Identities=24% Similarity=0.368 Sum_probs=66.2
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcEeC
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFG 494 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~f~ 494 (532)
.+++|+|+|| |..+. .++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+|+. ||..|+
T Consensus 8 ~~~~l~V~nL--p~~~t---------~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~ 74 (102)
T 2xs2_A 8 MPNTVFVGGI--DVRMD---------ETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFH 74 (102)
T ss_dssp EEEEEEEECC--CTTCC---------HHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEET
T ss_pred CCCEEEEeCC--CCCCC---------HHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeEC
Confidence 3469999999 55542 3589999999999999999875 467999999999999999998 999999
Q ss_pred CeEEEEEeecCCcc
Q 009565 495 GRQIHASEDDGLVN 508 (532)
Q Consensus 495 GR~I~V~~~dg~~~ 508 (532)
|+.|.|.++..+..
T Consensus 75 g~~l~v~~a~~~~~ 88 (102)
T 2xs2_A 75 GKKLKLGPAIRKQN 88 (102)
T ss_dssp TEECEEEEEEECC-
T ss_pred CEEEEEEECCcCcc
Confidence 99999988776543
No 363
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=1.9e-10 Score=102.06 Aligned_cols=73 Identities=19% Similarity=0.243 Sum_probs=62.2
Q ss_pred CcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCe----eEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCc
Q 009565 419 PATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPV----DSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGR 491 (532)
Q Consensus 419 ~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V----~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr 491 (532)
..+|+|+|| |...+ .++|+++|++||.| ..|.|+.+ +++|||||+|.+.++|.+||.. ||.
T Consensus 23 ~~~v~V~nL--p~~~t---------e~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~ 90 (123)
T 2dha_A 23 QVIVRMRGL--PFTAT---------AEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKD 90 (123)
T ss_dssp CCEEEECSC--CTTCC---------HHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTE
T ss_pred CCEEEEeCC--CCCCC---------HHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCC
Confidence 469999999 55543 35899999999986 58888754 6789999999999999999986 999
Q ss_pred EeCCeEEEEEee
Q 009565 492 WFGGRQIHASED 503 (532)
Q Consensus 492 ~f~GR~I~V~~~ 503 (532)
.|+||.|+|...
T Consensus 91 ~l~gR~i~V~~a 102 (123)
T 2dha_A 91 LLGKRYIELFRS 102 (123)
T ss_dssp ESSSCEECCEEE
T ss_pred eeCCeEEEEEEC
Confidence 999999999765
No 364
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.99 E-value=1.1e-10 Score=105.78 Aligned_cols=76 Identities=16% Similarity=0.108 Sum_probs=65.0
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcEeC
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFG 494 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~f~ 494 (532)
..++|+|.|| |...+ .++|+++|++|| |..|.|+.+ +++|||||+|.+.++|.+|| .||+..|+
T Consensus 45 ~~~~lfV~nL--p~~~t---------e~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~ 111 (139)
T 2hgn_A 45 TGHCVHMRGL--PYKAT---------ENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQ 111 (139)
T ss_dssp CCCCEECCSC--CTTCC---------HHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSS
T ss_pred CCCEEEEeCC--CCCCC---------HHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEEC
Confidence 3568999999 55543 358999999999 679998755 67999999999999999999 78999999
Q ss_pred CeEEEEEeecCC
Q 009565 495 GRQIHASEDDGL 506 (532)
Q Consensus 495 GR~I~V~~~dg~ 506 (532)
||.|+|.+....
T Consensus 112 gR~i~V~~a~~~ 123 (139)
T 2hgn_A 112 HRYIELFLNSTT 123 (139)
T ss_dssp SCCCCCEECCCS
T ss_pred CEEEEEEECCCC
Confidence 999999887654
No 365
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.98 E-value=5.8e-10 Score=115.39 Aligned_cols=77 Identities=18% Similarity=0.311 Sum_probs=63.9
Q ss_pred CCcEEEEEC--CCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceec
Q 009565 287 VNTHVYVTG--LPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFR 364 (532)
Q Consensus 287 ~~~~VyV~n--LP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~ 364 (532)
...+|||+| |++.+|+++|+++|++||.|.+ |.|.+ +||||||+|.+.++|.+||+.|||..+.
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~--------v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDA--------LLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEE--------EECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEE--------EEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 457899999 5789999999999999999985 76642 4799999999999999999999999984
Q ss_pred C--CCCeeEEEeccc
Q 009565 365 P--DGKIPMSVTQAK 377 (532)
Q Consensus 365 ~--G~~~~I~V~~A~ 377 (532)
. |.+.+|.+.++.
T Consensus 83 ~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 83 DDLGQKITLYLNFVE 97 (345)
T ss_dssp CTTSCEEECEEEECS
T ss_pred cccCCceEEEEEEee
Confidence 1 333457776663
No 366
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=5.5e-10 Score=92.05 Aligned_cols=75 Identities=23% Similarity=0.247 Sum_probs=61.4
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCc--EeCC
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGR--WFGG 495 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr--~f~G 495 (532)
.+++|||.|| |..+. .++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++| ++. .+.|
T Consensus 4 ~~~~l~V~nL--p~~~t---------e~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~----~~~~~~~~g 67 (88)
T 1wf0_A 4 GSSGVFVGRC--TGDMT---------EDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSL----CGEDLIIKG 67 (88)
T ss_dssp CCCEEEEESC--CSSSC---------HHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHT----TTCEEEETT
T ss_pred CCcEEEEeCC--CCCCC---------HHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHH----hcCCceeCC
Confidence 3579999999 55543 3589999999999999999875 789999999999999754 554 4599
Q ss_pred eEEEEEeecCCcc
Q 009565 496 RQIHASEDDGLVN 508 (532)
Q Consensus 496 R~I~V~~~dg~~~ 508 (532)
++|.|.++..+..
T Consensus 68 ~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 68 ISVHISNAEPKHN 80 (88)
T ss_dssp EEEEEECCCCCCC
T ss_pred EEEEEEecCCCCC
Confidence 9999999877643
No 367
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.97 E-value=5.6e-10 Score=99.46 Aligned_cols=75 Identities=16% Similarity=0.210 Sum_probs=62.7
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCee--EEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCc
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVD--SVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGR 491 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~--~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr 491 (532)
...++|+|+|| |...+ .++|++.|++| .|. .|.|+.+ +++|||||+|.+.++|.+||.. ++.
T Consensus 40 ~~~~~lfVgnL--p~~~t---------e~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~ 106 (126)
T 2hgm_A 40 ANDGFVRLRGL--PFGCT---------KEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKE 106 (126)
T ss_dssp SSCCEEEEECC--CTTCC---------HHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTC
T ss_pred CCCCEEEEeCC--CCCCC---------HHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCC
Confidence 34569999999 55543 35899999999 566 8988754 6799999999999999999985 889
Q ss_pred EeCCeEEEEEeec
Q 009565 492 WFGGRQIHASEDD 504 (532)
Q Consensus 492 ~f~GR~I~V~~~d 504 (532)
.|+||.|.|....
T Consensus 107 ~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 107 RIGHRYIEVFKSS 119 (126)
T ss_dssp CBTTBCCCCEEEC
T ss_pred EECCEEEEEEECC
Confidence 9999999997764
No 368
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=9.1e-10 Score=95.58 Aligned_cols=75 Identities=16% Similarity=0.343 Sum_probs=58.0
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc-------CCCcEEEEEeCCHHHHHHHHHHH--
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN-------HPQGVVLVRFKDRKDAQKCIELM-- 488 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~-------~~kG~aFV~F~s~eeA~kAi~~L-- 488 (532)
.+++|||.|| |.... .++|+++|++||.|. +.++.+ +++|||||+|.+.++|.+||+.|
T Consensus 7 ~~~~lfVgnL--p~~~t---------e~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~ 74 (114)
T 2dnl_A 7 GSRKVFVGGL--PPDID---------EDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE 74 (114)
T ss_dssp CCCCEEEECC--CTTCC---------HHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE
T ss_pred CCCEEEEcCC--CCCCC---------HHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh
Confidence 4579999999 55543 358999999999999 776642 56899999999999999999999
Q ss_pred -CCc--------EeCCeEEEEEeec
Q 009565 489 -NGR--------WFGGRQIHASEDD 504 (532)
Q Consensus 489 -nGr--------~f~GR~I~V~~~d 504 (532)
||+ .+.+++|.|.-|.
T Consensus 75 ~~G~~~~~~~~~~~~~~~~~v~p~~ 99 (114)
T 2dnl_A 75 EDGKLYLCVSSPTIKDKPVQIRPWN 99 (114)
T ss_dssp ETTEEEEEECCSSSCSEEEEEECCC
T ss_pred cCCcEEEeccCCCcCCCeeeccCCc
Confidence 555 3345556655443
No 369
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.94 E-value=1.5e-09 Score=103.40 Aligned_cols=73 Identities=18% Similarity=0.247 Sum_probs=62.5
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc---CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCe
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN---HPQGVVLVRFKDRKDAQKCIELMNGRWFGGR 496 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~---~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR 496 (532)
++|||+|| |... ..++|+++|++||.|..|.|+++ .++|||||+|.+.++|.+|+..++ ..|+||
T Consensus 110 ~~l~V~nL--p~~~---------t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr 177 (193)
T 2voo_A 110 RSVYIKGF--PTDA---------TLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKET 177 (193)
T ss_dssp TEEEEECC--CTTC---------CHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTE
T ss_pred CEEEecCC--CCcC---------CHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCE
Confidence 48999999 5543 23589999999999999999864 578999999999999999998765 499999
Q ss_pred EEEEEeec
Q 009565 497 QIHASEDD 504 (532)
Q Consensus 497 ~I~V~~~d 504 (532)
+|.|.+..
T Consensus 178 ~l~V~~~~ 185 (193)
T 2voo_A 178 DLLILFKD 185 (193)
T ss_dssp ECEEEETT
T ss_pred EEEEEEhH
Confidence 99998754
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=2.2e-09 Score=91.72 Aligned_cols=62 Identities=18% Similarity=0.160 Sum_probs=55.2
Q ss_pred HHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecCCc
Q 009565 443 LEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDGLV 507 (532)
Q Consensus 443 i~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg~~ 507 (532)
.+++|+++|++||.|..|.|+. +++|||||+|.+.++|.+||..++| +.|++|+|.++..+.
T Consensus 30 te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 30 SKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 3568999999999999999984 7899999999999999999998666 689999999987764
No 371
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=4.5e-09 Score=87.89 Aligned_cols=78 Identities=17% Similarity=0.269 Sum_probs=62.3
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEE
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIH 499 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~ 499 (532)
.+|+|...-.. ..+..+..++..+|.+.|+.||.|..|+++.++ +||+|.+.++|.+||. |||..++||.|+
T Consensus 8 ~tv~V~~~~~~---~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 8 GTVLVSIKSSL---PENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLNRTIT 79 (91)
T ss_dssp CEEEEEEECSS---TTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETTEEEE
T ss_pred CeEEEEeccCc---cccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCCeEEE
Confidence 37777775211 112222345567899999999999999998854 8999999999999998 999999999999
Q ss_pred EEeecC
Q 009565 500 ASEDDG 505 (532)
Q Consensus 500 V~~~dg 505 (532)
|.+..+
T Consensus 80 V~lkt~ 85 (91)
T 2dnr_A 80 IALKSP 85 (91)
T ss_dssp EEECCC
T ss_pred EEeCCC
Confidence 998765
No 372
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=1.5e-08 Score=86.49 Aligned_cols=64 Identities=19% Similarity=0.290 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCCCCeeEEEeccc
Q 009565 298 DDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKIPMSVTQAK 377 (532)
Q Consensus 298 ~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~~~~I~V~~A~ 377 (532)
.++|+++|+++|++||.|.. |.|+ ++++|||||+|.+.++|..||..+++ +. | ++|.|..+.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~--------v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~-g--~~l~V~~a~ 88 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLN--------LVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LV-D--NPLKISWLE 88 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEE--------EEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CS-S--SBCEEECSS
T ss_pred CCCCHHHHHHHHHhcCCEEE--------EEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CC-C--CeEEEEEcc
Confidence 56899999999999999996 8887 46899999999999999999988665 33 4 568888876
Q ss_pred cc
Q 009565 378 FE 379 (532)
Q Consensus 378 ~~ 379 (532)
..
T Consensus 89 ~~ 90 (100)
T 2d9o_A 89 GQ 90 (100)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 373
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=1.6e-08 Score=85.06 Aligned_cols=77 Identities=19% Similarity=0.396 Sum_probs=60.8
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEE
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIH 499 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~ 499 (532)
.||+|..+ ++.......+..++..+|.+.|+.||.|..|++..++ +||+|.+.++|.+||. |||..++||.|+
T Consensus 16 ~Tv~V~~~--~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 16 ATVVVNLQ--SPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CEEEEEES--SCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CeEEEEec--CCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 48888877 2110111122345567899999999999999998854 9999999999999998 999999999999
Q ss_pred EEee
Q 009565 500 ASED 503 (532)
Q Consensus 500 V~~~ 503 (532)
|.+.
T Consensus 89 V~~k 92 (95)
T 1ufw_A 89 ISGP 92 (95)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9874
No 374
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.70 E-value=3.1e-08 Score=102.47 Aligned_cols=76 Identities=11% Similarity=0.124 Sum_probs=61.0
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEe---C
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWF---G 494 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f---~ 494 (532)
...+|||.|+--.... .+++|+++|++||.|.+|.+++ ++|||||+|.+.++|++||+.|||+.+ .
T Consensus 17 ps~~l~VgN~gl~~~~---------te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~ 85 (345)
T 3tht_A 17 ATQSLVVANGGLGNGV---------SRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (345)
T ss_dssp CCSEEEEETCSGGGTC---------CHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred CCCEEEEEcCCCCCCC---------CHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCcccccc
Confidence 3469999995112222 2358999999999999998876 579999999999999999999999987 3
Q ss_pred Ce--EEEEEeec
Q 009565 495 GR--QIHASEDD 504 (532)
Q Consensus 495 GR--~I~V~~~d 504 (532)
|+ +|.+.|..
T Consensus 86 g~~~~ly~~~~~ 97 (345)
T 3tht_A 86 GQKITLYLNFVE 97 (345)
T ss_dssp SCEEECEEEECS
T ss_pred CCceEEEEEEee
Confidence 55 67888774
No 375
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.68 E-value=2.5e-08 Score=87.24 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=61.9
Q ss_pred CcEEEEECCCCCC----------CHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHH
Q 009565 288 NTHVYVTGLPDDV----------TVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQL 357 (532)
Q Consensus 288 ~~~VyV~nLP~~v----------TeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~ 357 (532)
.+.|.+.|+=..- .+++|++.|++||.|.+ |.|.++. ++|+|||.|.+.++|.+|++.
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~--------v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~ 74 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIH--------IYVDKNS----AQGNVYVKCPSIAAAIAAVNA 74 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSE--------EEECTTC----TTCCEEEECSSHHHHHHHHHH
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEE--------EEEecCC----CcEEEEEEECCHHHHHHHHHH
Confidence 3678999983221 23588999999999996 8887652 599999999999999999999
Q ss_pred hCCceecCCCCeeEEEeccc
Q 009565 358 LDGTPFRPDGKIPMSVTQAK 377 (532)
Q Consensus 358 LnG~~l~~G~~~~I~V~~A~ 377 (532)
|||..|. | +.|.|..+.
T Consensus 75 lnG~~f~-G--R~i~v~~~~ 91 (114)
T 3s6e_A 75 LHGRWFA-G--KMITAAYVP 91 (114)
T ss_dssp HTTCEET-T--EECEEEEEC
T ss_pred hCCCEEC-C--EEEEEEEEc
Confidence 9999996 5 678888876
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=4.8e-08 Score=86.25 Aligned_cols=78 Identities=17% Similarity=0.213 Sum_probs=64.4
Q ss_pred ccCCCCcEEEEECCCCC-CCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecC-HHHHHHHHHHhC-
Q 009565 283 FELKVNTHVYVTGLPDD-VTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLK-EPSVALATQLLD- 359 (532)
Q Consensus 283 ~~~~~~~~VyV~nLP~~-vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~-~esA~~Al~~Ln- 359 (532)
+.+..++-|||+||+.+ +|.++|+++|++||.|.. |.+.++.. .|||.|.+ ..+|..|+..||
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~--------Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~ 78 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKW--------IDFVRGAK------EGIILFKEKAKEALGKAKDANN 78 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEE--------EECCTTCS------EEEEEESSCHHHHHHHHHHTTT
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEE--------EEEecCCC------EEEEEECCChHHHHHHHHHhhc
Confidence 45678999999999999 999999999999999996 99987743 49999999 899999999995
Q ss_pred -CceecCCCCeeEEEeccc
Q 009565 360 -GTPFRPDGKIPMSVTQAK 377 (532)
Q Consensus 360 -G~~l~~G~~~~I~V~~A~ 377 (532)
|..|. | ..+.+....
T Consensus 79 ~~~~i~-g--~~~~~evL~ 94 (121)
T 1owx_A 79 GNLQLR-N--KEVTWEVLE 94 (121)
T ss_dssp SCBCTT-S--SSEEEEECC
T ss_pred CCcEEe-C--cEEEEEECC
Confidence 66665 4 345554433
No 377
>1wh2_A Hypothetical protein AT5G08430; GYF domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} SCOP: d.76.1.1
Probab=98.61 E-value=2.4e-08 Score=81.25 Aligned_cols=62 Identities=18% Similarity=0.287 Sum_probs=55.8
Q ss_pred CCCccceEEEcCCCcccCCCCHHHHHHHHHcCcccCCccccccCccCcccCCCcchhhhcccc
Q 009565 20 TAGEEGWYILDENQQHVGPYAISELCEHFLNGYLLETTLVWSQGRSEWQPLSSIPQFLSGISQ 82 (532)
Q Consensus 20 ~~~~~~Wyy~~~~~~~~GP~~~~~l~~~~~~g~i~~~tlvW~~Gm~~W~p~~~v~eL~~~~~~ 82 (532)
...+..|||++.+|+.+|||+..+|+.++..|+++.+.+||+.|-+.|.++. +.+|...+.+
T Consensus 14 ~~~~~~W~Y~Dp~g~iQGPFs~~~M~~W~~~GyF~~~L~Vrr~~~~~~~~i~-L~dll~~~g~ 75 (78)
T 1wh2_A 14 DKEKLNWLYKDPQGLVQGPFSLTQLKAWSDAEYFTKQFRVWMTGESMESAVL-LTDVLRLSGP 75 (78)
T ss_dssp CSSSCCEEEECTTSCEEEEECHHHHHHHHTTTSSCSCCEEEETTSCTTSCEE-HHHHHHHSSC
T ss_pred CcccCeEEEECCCCCCcCCcCHHHHHHHHHcCCCCCCceEEEeCCCCcceeh-HHHHHHHHCC
Confidence 4577899999999999999999999999999999999999999999999988 7777665543
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.38 E-value=6.8e-07 Score=74.65 Aligned_cols=71 Identities=20% Similarity=0.272 Sum_probs=58.3
Q ss_pred CcEEEEECCCC----CCCH----HHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhC
Q 009565 288 NTHVYVTGLPD----DVTV----EEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLD 359 (532)
Q Consensus 288 ~~~VyV~nLP~----~vTe----eeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~Ln 359 (532)
..+|+|.-+|. +.-. .+|.+.|+.||.|.. ++++.|+ +||+|.+.++|.+||. ||
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~--------vr~~~d~--------~fVtF~d~~sAlaAi~-mn 69 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVIL--------IRFVEDK--------MWVTFLEGSSALNVLS-LN 69 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEE--------EEECSSS--------EEEEESSHHHHHHGGG-GT
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEE--------EEEecCC--------EEEEECChHHHHHHHh-cC
Confidence 37888888772 3434 578999999999887 9998873 8999999999999998 99
Q ss_pred CceecCCCCeeEEEecccc
Q 009565 360 GTPFRPDGKIPMSVTQAKF 378 (532)
Q Consensus 360 G~~l~~G~~~~I~V~~A~~ 378 (532)
|..+. | +.|+|+.+..
T Consensus 70 G~~v~-G--r~LkV~lkt~ 85 (91)
T 2dnr_A 70 GKELL-N--RTITIALKSP 85 (91)
T ss_dssp TCEET-T--EEEEEEECCC
T ss_pred CeEeC-C--eEEEEEeCCC
Confidence 99996 5 6788887763
No 379
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.32 E-value=2.5e-06 Score=75.24 Aligned_cols=79 Identities=11% Similarity=0.057 Sum_probs=65.1
Q ss_pred CCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCC-HHHHHHHHHHHC--CcE
Q 009565 416 LTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKD-RKDAQKCIELMN--GRW 492 (532)
Q Consensus 416 ~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s-~eeA~kAi~~Ln--Gr~ 492 (532)
....++|+|.|+ +.... .+++|++.|++||.|..|.+..+.. .|||+|.+ +.+|..|+..|| |..
T Consensus 15 ~~~G~il~v~~l--~~~~~--------sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~ 82 (121)
T 1owx_A 15 EKIGCLLKFSGD--LDDQT--------CREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQ 82 (121)
T ss_dssp CCCCCEEEEEES--CCSSC--------CHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBC
T ss_pred ccCCeEEEEecC--CCCcC--------CHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcE
Confidence 345679999999 33311 2469999999999999999988653 69999999 899999999995 789
Q ss_pred eCCeEEEEEeecCC
Q 009565 493 FGGRQIHASEDDGL 506 (532)
Q Consensus 493 f~GR~I~V~~~dg~ 506 (532)
+.|..+++.+-.|.
T Consensus 83 i~g~~~~~evL~Ge 96 (121)
T 1owx_A 83 LRNKEVTWEVLEGE 96 (121)
T ss_dssp TTSSSEEEEECCHH
T ss_pred EeCcEEEEEECCCH
Confidence 99999999887774
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.25 E-value=1.4e-06 Score=83.87 Aligned_cols=67 Identities=19% Similarity=0.188 Sum_probs=57.8
Q ss_pred CCHHHHHHHHhccCccccCCCCCCCeEEEEecCC----CCCccccEEEEecCHHHHHHHHHHhCCceecCCCCeeEEEec
Q 009565 300 VTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKE----TGMKKGDALVTYLKEPSVALATQLLDGTPFRPDGKIPMSVTQ 375 (532)
Q Consensus 300 vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~----tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G~~~~I~V~~ 375 (532)
-.+++|++.|++||.|.+ ++|+++.. +|.++|++||+|.+.++|.+|++.|||..+. | +.|.+.+
T Consensus 141 e~~~dl~~e~~~~G~v~~--------~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~-g--r~i~~~~ 209 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNR--------VIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA-G--RKVVAEV 209 (222)
T ss_dssp THHHHHHHHHTTTSCEEE--------EEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS-S--SBCEEEE
T ss_pred HHHHHHHHHHHccCCeEE--------EEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC-C--eEEEEEE
Confidence 456799999999999997 99986643 4589999999999999999999999999997 5 5688877
Q ss_pred cc
Q 009565 376 AK 377 (532)
Q Consensus 376 A~ 377 (532)
..
T Consensus 210 ~~ 211 (222)
T 3dxb_A 210 YD 211 (222)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.15 E-value=4.5e-06 Score=70.13 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=57.0
Q ss_pred CcEEEEECCCCC-----CCH----HHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHh
Q 009565 288 NTHVYVTGLPDD-----VTV----EEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLL 358 (532)
Q Consensus 288 ~~~VyV~nLP~~-----vTe----eeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~L 358 (532)
..||+|.-++.+ +-. .+|.+.|+.||.|.. +++..|+ +||+|.+.++|.+||. |
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vil--------vr~v~d~--------~fVtF~d~~sAl~AI~-l 77 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVL--------VRINQGQ--------MLVTFADSHSALSVLD-V 77 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSE--------EEEETTE--------EEEECSCSHHHHHHHH-G
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEE--------EEEecCc--------EEEEEcChHHHHHHHh-c
Confidence 378999988743 222 568899999998886 9999883 9999999999999998 9
Q ss_pred CCceecCCCCeeEEEecc
Q 009565 359 DGTPFRPDGKIPMSVTQA 376 (532)
Q Consensus 359 nG~~l~~G~~~~I~V~~A 376 (532)
||..+. | +.|+|+.-
T Consensus 78 dG~~v~-G--r~L~V~~k 92 (95)
T 1ufw_A 78 DGMKVK-G--RAVKISGP 92 (95)
T ss_dssp GGSEET-T--EEEEEECC
T ss_pred CCeeeC-C--eEEEEecc
Confidence 999996 4 67888654
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.95 E-value=2.6e-05 Score=66.96 Aligned_cols=73 Identities=15% Similarity=0.223 Sum_probs=62.2
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhcc-----CCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcE
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKI-----GPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRW 492 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskf-----G~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~ 492 (532)
.+++|-|-|+ |+. .+| ..|+.+..+| |.|++|.|..++ |-|+|.|.+...|-+|.-.|||..
T Consensus 20 ~~rtiaL~~i--pDt-vnd--------arIr~lve~~~~i~~g~i~KI~L~pDH--~GAivef~d~~~AgKasLaL~G~e 86 (117)
T 2l9w_A 20 LETLICLFPL--SDK-VSP--------SLICQFLQEEIHINEKDIRKILLVSDF--NGAIIIFRDSKFAAKMLMILNGSQ 86 (117)
T ss_dssp TTSCEEEECC--CTT-CCH--------HHHHHHHHHHTCCCTTTCSEEEEETTT--TEEEEECSCHHHHHHHHHHHSSEE
T ss_pred CCcEEEEecC--CCC-CCH--------HHHHHHHhhhhccCccceeEEEEecCC--CceEEEEccchhhHHHHhhcCCee
Confidence 3568988898 444 334 3678888888 999999999887 789999999999999999999999
Q ss_pred eCCeEEEEEee
Q 009565 493 FGGRQIHASED 503 (532)
Q Consensus 493 f~GR~I~V~~~ 503 (532)
|+||+|+|.-.
T Consensus 87 f~gr~Lr~gTv 97 (117)
T 2l9w_A 87 FQGKVIRSGTI 97 (117)
T ss_dssp ETTEEEEEECH
T ss_pred ecCeEEEecCH
Confidence 99999999543
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.57 E-value=0.00024 Score=60.57 Aligned_cols=80 Identities=11% Similarity=0.072 Sum_probs=65.1
Q ss_pred CCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCCe
Q 009565 417 TIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGGR 496 (532)
Q Consensus 417 ~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR 496 (532)
..|.++++.|+ +.++-.+ .++++.++.+|..|+++.....++. -..+.|.|.++++|.+|-..|||..|.|+
T Consensus 3 ~~pntLiitnl--~~~vF~~----~~lk~~~e~Lf~~~~~~~tF~~lkS--FRRirv~F~~~~~A~~AR~~Lh~~~f~g~ 74 (104)
T 1wey_A 3 SGSSGLIACVA--NDDVFSE----SETRAKFESLFRTYDKDTTFQYFKS--FKRVRINFSNPLSAADARLRLHKTEFLGK 74 (104)
T ss_dssp SCCCEEEEECC--CGGGGST----TTHHHHHHHHHHTTCSSCEEEEETT--TTEEEEECSSTTHHHHHHHTSTTSEETTE
T ss_pred CCCceEEEecC--CHHHcCC----HHHHHHHHHHHHhhCcCcceeecCc--ceEEEEEeCChHHHHHHHHHhccceecCc
Confidence 35679999999 3333223 2456789999999999988877763 34689999999999999999999999999
Q ss_pred EEEEEeec
Q 009565 497 QIHASEDD 504 (532)
Q Consensus 497 ~I~V~~~d 504 (532)
.|+|.|..
T Consensus 75 ~~r~YFgq 82 (104)
T 1wey_A 75 EMKLYFAQ 82 (104)
T ss_dssp ECEEECCC
T ss_pred eeEEEecC
Confidence 99998864
No 384
>3k3v_A Protein SMY2; GYF domain, poly-proline binding, domain SWAP, ragnya, phosphoprotein, protein binding; 1.80A {Saccharomyces cerevisiae} PDB: 3fma_A
Probab=97.48 E-value=3e-05 Score=65.68 Aligned_cols=56 Identities=20% Similarity=0.415 Sum_probs=48.0
Q ss_pred CCccceEEEcCCCcccCCCCHHHHHHHHHcCcccCCccccccCc--------cCcccCCCcchh
Q 009565 21 AGEEGWYILDENQQHVGPYAISELCEHFLNGYLLETTLVWSQGR--------SEWQPLSSIPQF 76 (532)
Q Consensus 21 ~~~~~Wyy~~~~~~~~GP~~~~~l~~~~~~g~i~~~tlvW~~Gm--------~~W~p~~~v~eL 76 (532)
..+.-|||.+..|+-+|||+..+|..++..|+++.+-+|||.+- ..|.+|+++=.+
T Consensus 13 ~~e~~W~Y~Dp~G~vQGPFs~~~M~~W~~~GYF~~~L~VrR~~~~~~p~g~d~~F~~Lgel~~~ 76 (100)
T 3k3v_A 13 SVESSWRYIDTQGQIHGPFTTQMMSQWYIGGYFASTLQISRLGSTPETLGINDIFITLGELMTK 76 (100)
T ss_dssp --CCEEEEECTTSCEEEEEEHHHHHHHHHTTCCCTTCEEEECCSSCCSSSCBTCCEEHHHHHHH
T ss_pred cccceEEEECCCCCCcCCcCHHHHHHHHHcCCCCCCceEEEcCCCCCccCCCCceeeHHHHHHH
Confidence 35789999999999999999999999999999999999999864 378888776443
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.16 E-value=0.0022 Score=53.50 Aligned_cols=83 Identities=18% Similarity=0.271 Sum_probs=60.8
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCC--ccccEEEEecCHHHHHHHHHHhCCceecC-
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGM--KKGDALVTYLKEPSVALATQLLDGTPFRP- 365 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~--~kG~aFV~F~~~esA~~Al~~LnG~~l~~- 365 (532)
++|.|++||+.+|+++|.+.++.+..+.- ...+..+.+.. .-.-|||.|.+.+++..-.+.++|..+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~--------~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDY--------FEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEE--------EEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceE--------EEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 67999999999999999999998875542 34433322211 23579999999999999999999999873
Q ss_pred -CCCeeEEEeccccc
Q 009565 366 -DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 -G~~~~I~V~~A~~~ 379 (532)
|...+-.|+.|.++
T Consensus 74 kg~~~~a~VE~AP~q 88 (91)
T 1uw4_A 74 KGQEYPAIVEFAPFQ 88 (91)
T ss_dssp TCCEEECEEEECSSC
T ss_pred CCCEeeeEEEEcCCC
Confidence 23344456666554
No 386
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.0017 Score=55.79 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=62.4
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhcc-----CccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCce
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKC-----GIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTP 362 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~-----G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~ 362 (532)
.++|-+=|||..++...|+.+..++ |.|.. |.|..| -|-|+|+|.+...|-+|.-.|||..
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~K--------I~L~pD------H~GAivef~d~~~AgKasLaL~G~e 86 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRK--------ILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQ 86 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSE--------EEEETT------TTEEEEECSCHHHHHHHHHHHSSEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeE--------EEEecC------CCceEEEEccchhhHHHHhhcCCee
Confidence 4778889999999999999999999 88874 888776 3459999999999999999999999
Q ss_pred ecCCCCeeEEEeccc
Q 009565 363 FRPDGKIPMSVTQAK 377 (532)
Q Consensus 363 l~~G~~~~I~V~~A~ 377 (532)
|. | ++|++.-..
T Consensus 87 f~-g--r~Lr~gTv~ 98 (117)
T 2l9w_A 87 FQ-G--KVIRSGTIN 98 (117)
T ss_dssp ET-T--EEEEEECHH
T ss_pred ec-C--eEEEecCHH
Confidence 96 5 667776543
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.67 E-value=0.0053 Score=51.65 Aligned_cols=54 Identities=24% Similarity=0.372 Sum_probs=47.3
Q ss_pred EEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhC
Q 009565 290 HVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLD 359 (532)
Q Consensus 290 ~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~Ln 359 (532)
.||+-++|+.+...+|..+|+.||.|. |+.+-|. .|||.|.+++.|..|+..+.
T Consensus 17 HVf~l~FP~ewKt~DI~~lFs~fggv~---------I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHVTFPKEWKTSDLYQLFSAFGNIQ---------ISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEEECCTTCCHHHHHHHHTTTCSCC---------CEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEEeCChhhhhHHHHHHhhccCCEE---------EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 344449999999999999999999887 8998873 69999999999999998764
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.21 E-value=0.0054 Score=51.74 Aligned_cols=54 Identities=24% Similarity=0.371 Sum_probs=47.6
Q ss_pred EEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhC
Q 009565 290 HVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLD 359 (532)
Q Consensus 290 ~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~Ln 359 (532)
.||+-++|+.+...+|..+|+.||.|. |+.+-|. .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fggv~---------I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGNIQ---------ISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEEEE---------EEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhhhhHHHHHHHhccCCEE---------EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 455449999999999999999999887 8998873 69999999999999998775
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.86 E-value=0.018 Score=50.30 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=47.3
Q ss_pred HHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcEeCC-eEEEEEeec
Q 009565 445 ADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWFGG-RQIHASEDD 504 (532)
Q Consensus 445 edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~f~G-R~I~V~~~d 504 (532)
..|..+|++||.|.+..... ......|+|.++.+|++||.. ||+.|+| -.|-|....
T Consensus 38 ~~VL~~F~~~G~Iv~~~~~~--~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 38 SYILLQFAQYGNILKHVMSN--TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCI 95 (119)
T ss_dssp HHHHHHHHTTSCEEEEEECS--SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECC
T ss_pred HHHHHHHHhhCcEEEeccCC--CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECC
Confidence 36789999999999888743 346999999999999999975 9999985 667776643
No 390
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.82 E-value=0.018 Score=49.08 Aligned_cols=74 Identities=16% Similarity=0.113 Sum_probs=59.3
Q ss_pred CCcEEEEECCCCCC-CH----HHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCc
Q 009565 287 VNTHVYVTGLPDDV-TV----EEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGT 361 (532)
Q Consensus 287 ~~~~VyV~nLP~~v-Te----eeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~ 361 (532)
..++|+|+||+.++ +. ..|+++|..|+.+.+ ....+. -.-..|.|.+.++|.+|-..|++.
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~t--------F~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~ 69 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTT--------FQYFKS------FKRVRINFSNPLSAADARLRLHKT 69 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCE--------EEEETT------TTEEEEECSSTTHHHHHHHTSTTS
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcc--------eeecCc------ceEEEEEeCChHHHHHHHHHhccc
Confidence 45889999999865 22 577899999999986 655543 225789999999999999999999
Q ss_pred eecCCCCeeEEEeccc
Q 009565 362 PFRPDGKIPMSVTQAK 377 (532)
Q Consensus 362 ~l~~G~~~~I~V~~A~ 377 (532)
.+. | ..|+|-.+.
T Consensus 70 ~f~-g--~~~r~YFgq 82 (104)
T 1wey_A 70 EFL-G--KEMKLYFAQ 82 (104)
T ss_dssp EET-T--EECEEECCC
T ss_pred eec-C--ceeEEEecC
Confidence 997 5 468887776
No 391
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.64 E-value=0.016 Score=48.80 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=55.9
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecC-CCC-CccccEEEEecCHHHHHHHHHHhCCceecC
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDK-ETG-MKKGDALVTYLKEPSVALATQLLDGTPFRP 365 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~-~tG-~~kG~aFV~F~~~esA~~Al~~LnG~~l~~ 365 (532)
.-+|.|+.||+.+|+++|.+.++.+-.+. ....+..+ ..+ ..-..|||.|.+.+++..-.+.++|..+..
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d--------~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHD--------YFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEE--------ECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccc--------eEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 35699999999999999877766542221 01111110 111 122479999999999999999999999873
Q ss_pred --CCCeeEEEeccccc
Q 009565 366 --DGKIPMSVTQAKFE 379 (532)
Q Consensus 366 --G~~~~I~V~~A~~~ 379 (532)
|...+..|+.|.++
T Consensus 81 ~kg~~~~a~VE~APyq 96 (97)
T 2l08_A 81 SKGLEYPAVVEFAPFQ 96 (97)
T ss_dssp TTCCEEEEEEEECCCC
T ss_pred CCCCEeeeEEEecCCC
Confidence 33355567776643
No 392
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.24 E-value=0.014 Score=51.63 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=46.6
Q ss_pred HHHHHhhccCCeeE-EEEec-------------c----CCCcEEEEEeCCHHHHHHHHHHHCCcEeCCeEEEEEeecC
Q 009565 446 DVQEECVKIGPVDS-VKVCE-------------N----HPQGVVLVRFKDRKDAQKCIELMNGRWFGGRQIHASEDDG 505 (532)
Q Consensus 446 dLre~fskfG~V~~-V~l~~-------------~----~~kG~aFV~F~s~eeA~kAi~~LnGr~f~GR~I~V~~~dg 505 (532)
.|-.+|++||.|.. +.+.+ . .......|+|.++.+|.+||.. ||+.|+|..|-|..++.
T Consensus 22 ~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 22 QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAVFNGVLLGVIPYTK 98 (132)
T ss_dssp HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCEETTEECEEEECCH
T ss_pred HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeEeCcEEEEEEECCH
Confidence 67799999999876 21111 0 1246889999999999999975 99999999999988753
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.10 E-value=0.078 Score=46.19 Aligned_cols=72 Identities=21% Similarity=0.229 Sum_probs=55.6
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCceecCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGTPFRPD 366 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~~l~~G 366 (532)
..+.|.|-+.|+.. ...|...|++||.|.+ ... +. ....-.|.|.+..+|.+|| ..||..|.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~--------~~~---~~---~~NWihI~Y~s~~~A~rAL-~kNG~ii~-- 84 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILK--------HVM---SN---TGNWMHIRYQSKLQARKAL-SKDGRIFG-- 84 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEE--------EEE---CS---SSSEEEEEESSHHHHHHHH-TTTTCEET--
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEE--------ecc---CC---CCCeEEEEeCCHHHHHHHH-HhCCeEec--
Confidence 34789999999985 6778889999999985 333 11 2348999999999999999 57999994
Q ss_pred CCeeEEEecc
Q 009565 367 GKIPMSVTQA 376 (532)
Q Consensus 367 ~~~~I~V~~A 376 (532)
+...|-|.+-
T Consensus 85 g~~mIGV~p~ 94 (119)
T 1wwh_A 85 ESIMIGVKPC 94 (119)
T ss_dssp TTEECEEEEC
T ss_pred CCEEEEEEEC
Confidence 3355666553
No 394
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.79 E-value=0.074 Score=45.14 Aligned_cols=69 Identities=16% Similarity=0.166 Sum_probs=50.1
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhc----c-CccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCc
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSK----C-GIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGT 361 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk----~-G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~ 361 (532)
...+|.|.|||+++.++.|.-+|++ . |.|.. +.... +-|+|+|.+...|++.|+. ...
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~--------v~~~~--------~~AvItF~d~~va~rVL~k-~~H 69 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLS--------WQRLG--------CGGVLTFREPADAERVLAQ-ADH 69 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEE--------EEEET--------TEEEEEESSHHHHHHHHTC-SCC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeE--------EEEcC--------CcEEEEEcChHHHHHHhcC-Ccc
Confidence 4588999999999999999999986 2 55553 44321 5699999999999999853 234
Q ss_pred eecCCCCeeEEEec
Q 009565 362 PFRPDGKIPMSVTQ 375 (532)
Q Consensus 362 ~l~~G~~~~I~V~~ 375 (532)
.|. | .+|.|.+
T Consensus 70 ~L~-~--~~LsV~P 80 (104)
T 2dhx_A 70 ELH-G--AQLSLRP 80 (104)
T ss_dssp BSS-S--SBCEEEE
T ss_pred eec-C--eEEEEEc
Confidence 443 3 3456644
No 395
>1syx_B CD2BP2, CD2 antigen cytoplasmic tail-binding protein 2, CD; GYF-domain, thioredoxin-like, spliceosomal proteins, transla immune system complex; 2.35A {Homo sapiens} SCOP: d.76.1.1 PDB: 1gyf_A 1l2z_A
Probab=94.54 E-value=0.021 Score=46.97 Aligned_cols=51 Identities=12% Similarity=0.276 Sum_probs=45.2
Q ss_pred ccceEEE---cCCCcccCCCCHHHHHHHHHcCcccCCccccccC-c-cCcccCCCc
Q 009565 23 EEGWYIL---DENQQHVGPYAISELCEHFLNGYLLETTLVWSQG-R-SEWQPLSSI 73 (532)
Q Consensus 23 ~~~Wyy~---~~~~~~~GP~~~~~l~~~~~~g~i~~~tlvW~~G-m-~~W~p~~~v 73 (532)
++-|.|- +.+++-+|||+..+|+.+...|+.+..-+|.+-| . ..|.|+..|
T Consensus 25 ~~~WeYKW~~~~~~~i~GPfs~~eM~~W~~~GYF~~~v~vRrvg~~~~~Fy~~~rI 80 (86)
T 1syx_B 25 DVMWEYKWENTGDAELYGPFTSAQMQTWVSEGYFPDGVYCRKLDPPGGQFYNSKRI 80 (86)
T ss_dssp CCEEEEESSSSSSSCCEEEEEHHHHHHHHHTTSCTTCCEEEESSSTTCCCEEGGGC
T ss_pred cceEEEEecCCCCCcccCCcCHHHHHHHHHCCCcCCCeEEEEecCCCCceEEeeee
Confidence 4889998 5557889999999999999999999999999999 4 689998776
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.62 E-value=0.045 Score=58.48 Aligned_cols=54 Identities=19% Similarity=0.325 Sum_probs=41.0
Q ss_pred cEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHH
Q 009565 289 THVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQ 356 (532)
Q Consensus 289 ~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~ 356 (532)
+.|||. .|..+++.+|.++|++||+|.+ +.++.+. | -||+|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~--------~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINN--------HFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCC--------EEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcce--------EEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 789998 7999999999999999999997 8888652 3 499999999999986653
No 397
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=93.17 E-value=0.3 Score=41.02 Aligned_cols=60 Identities=10% Similarity=0.205 Sum_probs=43.4
Q ss_pred CCCCCCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHC
Q 009565 414 AKLTIPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMN 489 (532)
Q Consensus 414 ~~~~~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~Ln 489 (532)
..+..+.+++| .+ |.+... .||.++|+.||.|. |.-+++ .-|||.|.+++.|..|+..|+
T Consensus 11 ~~p~r~HVf~l-~F--P~ewKt---------~DI~~lFs~fggv~-I~WidD---TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 11 LQPKRDHVLHV-TF--PKEWKT---------SDLYQLFSAFGNIQ-ISWIDD---TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCCSEEEE-EC--CTTCCH---------HHHHHHHTTTCSCC-CEEEET---TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCCeEEEE-eC--Chhhhh---------HHHHHHhhccCCEE-EEEEcC---CeEEEEecCHHHHHHHHHhcc
Confidence 34445567777 55 554433 48999999999665 444443 479999999999999999874
No 398
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=92.83 E-value=0.4 Score=39.73 Aligned_cols=64 Identities=20% Similarity=0.334 Sum_probs=48.9
Q ss_pred cEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc------CCCcEEEEEeCCHHHHHHHHHHHCCcEe
Q 009565 420 ATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN------HPQGVVLVRFKDRKDAQKCIELMNGRWF 493 (532)
Q Consensus 420 ~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~------~~kG~aFV~F~s~eeA~kAi~~LnGr~f 493 (532)
+.|+|++| |+.++.+ .+.+..+.+..+.......+ +.-..|||.|.+.+++..-.+.++|..|
T Consensus 2 ~KvVIRrL--PP~Ltee---------eF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRL--PPTLTKE---------QLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEE--CTTCCHH---------HHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCC--CCCCCHH---------HHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 36899999 8877543 55566667777766665543 2345799999999999999999999888
Q ss_pred C
Q 009565 494 G 494 (532)
Q Consensus 494 ~ 494 (532)
-
T Consensus 71 ~ 71 (91)
T 1uw4_A 71 L 71 (91)
T ss_dssp E
T ss_pred E
Confidence 4
No 399
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.99 E-value=1.9 Score=36.54 Aligned_cols=72 Identities=17% Similarity=0.123 Sum_probs=53.4
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhc-----cCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCCcE
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVK-----IGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRW 492 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fsk-----fG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnGr~ 492 (532)
...+|.|.|+ |+...+ +.|.-.|++ =|.|..|.... +-|+|+|.+...|++.+.. .-..
T Consensus 7 ~~~~I~V~~l--Pp~~~~---------e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~ 70 (104)
T 2dhx_A 7 GGVAVEVRGL--PPAVPD---------ELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHE 70 (104)
T ss_dssp CCCEEEEESC--CTTSCH---------HHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCB
T ss_pred CccEEEEECC--CCCCCh---------hHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-Ccce
Confidence 3469999999 655422 245566665 25899998866 6799999999999998863 3678
Q ss_pred eCCeEEEEEeecC
Q 009565 493 FGGRQIHASEDDG 505 (532)
Q Consensus 493 f~GR~I~V~~~dg 505 (532)
|.|.+|.|.-+-.
T Consensus 71 L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 71 LHGAQLSLRPAPP 83 (104)
T ss_dssp SSSSBCEEEECCC
T ss_pred ecCeEEEEEcCCC
Confidence 8889999976543
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=89.13 E-value=0.67 Score=40.94 Aligned_cols=86 Identities=21% Similarity=0.238 Sum_probs=54.4
Q ss_pred CCcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeE--EEE-ec--CCCC-CccccEEEEecCHHHHHHHHHHhCC
Q 009565 287 VNTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRI--KIY-VD--KETG-MKKGDALVTYLKEPSVALATQLLDG 360 (532)
Q Consensus 287 ~~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~pri--kl~-~d--~~tG-~~kG~aFV~F~~~esA~~Al~~LnG 360 (532)
..+.|.|=|.|+..+ ..+.+.|++||.|.++....++.. .+- +. +-.+ .....-.|+|.+..+|.+|| ..||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCC
Confidence 346788989987654 567789999999997532211111 000 00 0000 12347799999999999999 5899
Q ss_pred ceecCCCCeeEEEeccc
Q 009565 361 TPFRPDGKIPMSVTQAK 377 (532)
Q Consensus 361 ~~l~~G~~~~I~V~~A~ 377 (532)
..|. | ..|-|.+-.
T Consensus 84 ~ii~-G--~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFN-G--VLLGVIPYT 97 (132)
T ss_dssp CEET-T--EECEEEECC
T ss_pred eEeC-c--EEEEEEECC
Confidence 9995 4 356666554
No 401
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=86.99 E-value=0.51 Score=39.73 Aligned_cols=41 Identities=7% Similarity=0.223 Sum_probs=33.5
Q ss_pred HHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHC
Q 009565 445 ADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMN 489 (532)
Q Consensus 445 edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~Ln 489 (532)
.||.++|+.||.|. |.-+++ .-|||.|.+++.|..|+..|+
T Consensus 20 ~Di~~lFs~fggv~-I~WidD---TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 20 SDLYQLFSAFGNIQ-ISWIDD---TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp HHHHHHTTTSEEEE-EEEEET---TEEEEEEEEECHHHHHHHHHT
T ss_pred HHHHHHHhccCCEE-EEEEcC---CeEEEEecCHHHHHHHHHhcc
Confidence 48999999999554 444544 479999999999999999875
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=81.68 E-value=2.7 Score=45.23 Aligned_cols=57 Identities=23% Similarity=0.321 Sum_probs=47.1
Q ss_pred CcEEEEECCCCCCCHHHHHHHHhccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHHHHHHHHHhCCc
Q 009565 288 NTHVYVTGLPDDVTVEEMVEVFSKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPSVALATQLLDGT 361 (532)
Q Consensus 288 ~~~VyV~nLP~~vTeeeL~elFsk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~esA~~Al~~LnG~ 361 (532)
...++|+ +|..+...+|.++|+.||.+. |+.+-+ ..|||.|.+.+.|..+++.++..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~---------V~widd-------t~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQ---------ISWIDD-------TSAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCE---------EEECSS-------SEEEEECSCHHHHHHHHHHHTTC
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEE---------EEEEcC-------CeEEEEECCHHHHHHHHHHHHhC
Confidence 3456666 999999999999999999765 776655 26999999999999999988633
No 403
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=77.83 E-value=1.8 Score=46.06 Aligned_cols=41 Identities=12% Similarity=0.133 Sum_probs=31.9
Q ss_pred HHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHH
Q 009565 446 DVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIEL 487 (532)
Q Consensus 446 dLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~ 487 (532)
+|.+.|++||+|.++..+..+. -||.|+|.+.+++..++..
T Consensus 68 ~l~~y~~~~g~i~~~~~~~~~g-~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 68 KFLKYLSQFGPINNHFFYESFG-LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHHHHHGGGSCCCCEEEECSSS-EEEEEECC---CCHHHHSS
T ss_pred HHHHHHHhcCCcceEEEEccCC-eEEEEEeCCHHHHHHHHhc
Confidence 7889999999999999887542 4899999999999977643
No 404
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=70.31 E-value=4.3 Score=33.93 Aligned_cols=66 Identities=15% Similarity=0.269 Sum_probs=42.6
Q ss_pred CCcEEEEecccCCcccCcchhhHHHHHHHHHHHhhccCCeeEEEEecc------CCCcEEEEEeCCHHHHHHHHHHHCCc
Q 009565 418 IPATVILRFMFTPAEMRADENLRSELEADVQEECVKIGPVDSVKVCEN------HPQGVVLVRFKDRKDAQKCIELMNGR 491 (532)
Q Consensus 418 ~~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~fskfG~V~~V~l~~~------~~kG~aFV~F~s~eeA~kAi~~LnGr 491 (532)
.+-.|+|++| |+.++.+ .+.+.++.+=.+.......+ ..-..|||.|++.++...-.+.++|.
T Consensus 8 ~~~KvVIRrL--PP~Ltee---------~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~ 76 (97)
T 2l08_A 8 HSHMVVIRRL--PPGLTKE---------QLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGY 76 (97)
T ss_dssp CCCCEEEECC--CSCSCHH---------HHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTE
T ss_pred cceeEEEeCC--CCCCCHH---------HHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCc
Confidence 3457999999 8887544 22233333222322222221 12246999999999999999999998
Q ss_pred EeC
Q 009565 492 WFG 494 (532)
Q Consensus 492 ~f~ 494 (532)
.|-
T Consensus 77 ~F~ 79 (97)
T 2l08_A 77 IFL 79 (97)
T ss_dssp EEE
T ss_pred EEE
Confidence 873
No 405
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=41.75 E-value=24 Score=24.42 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=21.0
Q ss_pred CCCCCCCCceeEEcCCCCeEEeeCccc
Q 009565 167 GVPASPEGEDEFTDDDGTRYKWDRGLR 193 (532)
Q Consensus 167 ~~~~~~~~~~~~~~~dg~~y~wd~~~~ 193 (532)
++...|.|=....|.+|..|.||...+
T Consensus 5 ~~~~LP~gW~~~~~~~Gr~YY~n~~T~ 31 (43)
T 1ymz_A 5 RSMPLPPGWERRTDVEGKVYYFNVRTL 31 (43)
T ss_dssp --CCCCSSEEEEECTTSCEEEEETTTT
T ss_pred cCCCCCCCCEEEECCCCCEEEEECCCC
Confidence 455678887778889999999998765
No 406
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=32.40 E-value=50 Score=21.70 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=20.0
Q ss_pred CCCCCceeEEcCCCCeEEeeCccc
Q 009565 170 ASPEGEDEFTDDDGTRYKWDRGLR 193 (532)
Q Consensus 170 ~~~~~~~~~~~~dg~~y~wd~~~~ 193 (532)
..|.|=....|.+|..|.+|...+
T Consensus 4 ~LP~GWe~~~d~~G~~Yy~n~~t~ 27 (36)
T 1wr3_A 4 PLPPGWEEKVDNLGRTYYVNHNNR 27 (36)
T ss_dssp CSCTTEEEEECSSSCEEEEETTTC
T ss_pred CCCCCCEEEECCCCCEEEEECCCC
Confidence 458887778889999999998865
No 407
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=32.32 E-value=89 Score=33.33 Aligned_cols=42 Identities=10% Similarity=0.190 Sum_probs=34.2
Q ss_pred HHHHHHhhccCCeeEEEEeccCCCcEEEEEeCCHHHHHHHHHHHCC
Q 009565 445 ADVQEECVKIGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNG 490 (532)
Q Consensus 445 edLre~fskfG~V~~V~l~~~~~kG~aFV~F~s~eeA~kAi~~LnG 490 (532)
.+|.+.|+.||.| .|..+++ ..|||.|.+.+.|..++..++.
T Consensus 454 ~~i~~~fs~fg~v-~V~widd---t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 454 SDLYQLFSAFGNI-QISWIDD---TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp HHHHHHGGGGCCC-EEEECSS---SEEEEECSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCE-EEEEEcC---CeEEEEECCHHHHHHHHHHHHh
Confidence 4889999999965 4555544 5799999999999999999863
No 408
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=31.14 E-value=50 Score=21.70 Aligned_cols=24 Identities=25% Similarity=0.623 Sum_probs=19.8
Q ss_pred CCCCCceeEEcCCCCeEEeeCccc
Q 009565 170 ASPEGEDEFTDDDGTRYKWDRGLR 193 (532)
Q Consensus 170 ~~~~~~~~~~~~dg~~y~wd~~~~ 193 (532)
..|.|=.++.+.+|..|.++...+
T Consensus 3 ~LP~gW~~~~~~~G~~Yy~n~~t~ 26 (37)
T 1e0m_A 3 GLPPGWDEYKTHNGKTYYYNHNTK 26 (37)
T ss_dssp CSCTTEEEEECSSCCEEEEETTTT
T ss_pred CCCCCcEEEECCCCCEEEEECCCC
Confidence 357887788889999999998754
No 409
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=31.14 E-value=26 Score=32.14 Aligned_cols=59 Identities=17% Similarity=0.180 Sum_probs=34.9
Q ss_pred CcEEEEecccCCcccCcchhhHHHHHHHHHHHh--hccCCeeEEEEecc-CCCcEEEEEeCCHH
Q 009565 419 PATVILRFMFTPAEMRADENLRSELEADVQEEC--VKIGPVDSVKVCEN-HPQGVVLVRFKDRK 479 (532)
Q Consensus 419 ~~~v~i~Nlf~p~~~~~D~~l~~ei~edLre~f--skfG~V~~V~l~~~-~~kG~aFV~F~s~e 479 (532)
|.+++|.|+.+ +-..|-.+.-.--..|++.| +.|.++.-..+... -..|++.|.|.+--
T Consensus 12 PwmgIl~N~~t--~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 12 PWKGIVVNIPT--TKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDW 73 (172)
T ss_dssp SCEEEEECCCC--EECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSH
T ss_pred CCEEEEEeccc--cccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCCh
Confidence 56899999933 11111111111113677866 89998775555533 34689999999743
No 410
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=30.09 E-value=66 Score=21.56 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=20.4
Q ss_pred CCCCCceeEEcCCCCeEEeeCccc
Q 009565 170 ASPEGEDEFTDDDGTRYKWDRGLR 193 (532)
Q Consensus 170 ~~~~~~~~~~~~dg~~y~wd~~~~ 193 (532)
..|.|=...+|.+|.+|.+|...+
T Consensus 6 ~LP~gWe~~~d~~G~~YY~n~~t~ 29 (39)
T 2kyk_A 6 PLPPGWERRVDNMGRIYYVDHFTR 29 (39)
T ss_dssp CCCSSCEEEECTTSCEEEECSSSC
T ss_pred CCCCCcEEEEcCCCCEEEEECCCC
Confidence 458888888889999999998775
No 411
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=29.39 E-value=61 Score=21.79 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=20.6
Q ss_pred CCCCCceeEEcCCCCeEEeeCccc
Q 009565 170 ASPEGEDEFTDDDGTRYKWDRGLR 193 (532)
Q Consensus 170 ~~~~~~~~~~~~dg~~y~wd~~~~ 193 (532)
..|.|=.+..|.+|..|.|+...+
T Consensus 7 ~LP~gW~~~~d~~Gr~YY~n~~T~ 30 (40)
T 2ysh_A 7 GLPPGWQSYLSPQGRRYYVNTTTN 30 (40)
T ss_dssp SCCTTCEEEECTTSCEEEECSSSC
T ss_pred CCCCCceEEECCCCCEEEEECCCC
Confidence 468888888999999999998765
No 412
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.88 E-value=92 Score=23.39 Aligned_cols=31 Identities=23% Similarity=0.115 Sum_probs=23.7
Q ss_pred CCCCCCCCCCCceeEEcCCCCeEEeeCcccc
Q 009565 164 DHDGVPASPEGEDEFTDDDGTRYKWDRGLRA 194 (532)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~dg~~y~wd~~~~~ 194 (532)
+.+.....|.|=....|.+|.+|.+|+..|.
T Consensus 7 ~~d~~~~LP~GWE~~~d~~Gr~YYvnh~tk~ 37 (60)
T 2yse_A 7 GLDSELELPAGWEKIEDPVYGIYYVDHINRK 37 (60)
T ss_dssp CCCCCSSCCSSEEEEECSSSCEEEEETTTTE
T ss_pred ccCCCCCCCCCcEEEECCCCCEEEEeCCCCC
Confidence 3344456788977778899999999998763
No 413
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=26.65 E-value=83 Score=22.54 Aligned_cols=30 Identities=23% Similarity=0.123 Sum_probs=23.1
Q ss_pred CCCCCCCCCCCceeEEcCCCCeEEeeCccc
Q 009565 164 DHDGVPASPEGEDEFTDDDGTRYKWDRGLR 193 (532)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~dg~~y~wd~~~~ 193 (532)
+.+.....|.|=....|.+|.+|.+|+..|
T Consensus 7 ~~~~~~~LP~GWe~~~d~~Gr~YYvnh~t~ 36 (49)
T 2zaj_A 7 GLDSELELPAGWEKIEDPVYGIYYVDHINR 36 (49)
T ss_dssp CCCCSSCCCTTEEEEEETTTEEEEEETTTT
T ss_pred ccCCCCCCCcCceEEEcCCCCEEEEeCCCC
Confidence 334445678887777889999999999776
No 414
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=26.03 E-value=1.1e+02 Score=27.96 Aligned_cols=57 Identities=11% Similarity=0.105 Sum_probs=40.9
Q ss_pred cEEEEECCCCC---------CCHHHHHHHH--hccCccccCCCCCCCeEEEEecCCCCCccccEEEEecCHHH-HHHHHH
Q 009565 289 THVYVTGLPDD---------VTVEEMVEVF--SKCGIIKEDPETKKPRIKIYVDKETGMKKGDALVTYLKEPS-VALATQ 356 (532)
Q Consensus 289 ~~VyV~nLP~~---------vTeeeL~elF--sk~G~I~~d~~~~~prikl~~d~~tG~~kG~aFV~F~~~es-A~~Al~ 356 (532)
-.+.|-|+|.. .+..+|++.| +.|.++. |+.+.++ ..+.|++.|.|.+--+ ...|+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k---------v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR---------VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE---------EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce---------eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 34667788862 3457999977 9999988 6776663 3478999999977543 455654
No 415
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.80 E-value=61 Score=22.34 Aligned_cols=24 Identities=25% Similarity=0.341 Sum_probs=20.3
Q ss_pred CCCCCceeEEcCCCCeEEeeCccc
Q 009565 170 ASPEGEDEFTDDDGTRYKWDRGLR 193 (532)
Q Consensus 170 ~~~~~~~~~~~~dg~~y~wd~~~~ 193 (532)
..|.|=...+|.+|.+|.+|...+
T Consensus 7 ~LP~GWe~~~d~~Gr~YY~n~~t~ 30 (43)
T 2dmv_A 7 GLPPGWEQRVDQHGRVYYVDHVEK 30 (43)
T ss_dssp SCCTTEEEEECTTSCEEEEETTTC
T ss_pred CCCCCceEEECCCCCEEEEECCCC
Confidence 458888888899999999998765
No 416
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=24.71 E-value=77 Score=20.58 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=19.9
Q ss_pred CCCCCceeEEcCCCCeEEeeCccc
Q 009565 170 ASPEGEDEFTDDDGTRYKWDRGLR 193 (532)
Q Consensus 170 ~~~~~~~~~~~~dg~~y~wd~~~~ 193 (532)
..|.|=....|.+|..|.+|...+
T Consensus 4 ~LP~gWe~~~d~~g~~Yy~n~~t~ 27 (36)
T 1wr4_A 4 GLPSGWEERKDAKGRTYYVNHNNR 27 (36)
T ss_dssp TCCTTEEEEECSSSCEEEEETTTT
T ss_pred CCCCCCEEEECCCCCEEEEECCCC
Confidence 357887888889999999998764
No 417
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=22.31 E-value=72 Score=21.69 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=20.1
Q ss_pred CCCCCceeEEcCCCCeEEeeCccc
Q 009565 170 ASPEGEDEFTDDDGTRYKWDRGLR 193 (532)
Q Consensus 170 ~~~~~~~~~~~~dg~~y~wd~~~~ 193 (532)
..|.|=...+|.+|..|.+|...+
T Consensus 8 ~LP~gWe~~~~~~G~~Yy~n~~t~ 31 (41)
T 1wr7_A 8 FLPPGWEMRIAPNGRPFFIDHNTK 31 (41)
T ss_dssp SSCTTEEEEECTTSCEEEEETTTT
T ss_pred CCCCCcEEEEcCCCCEEEEECCCC
Confidence 458887788889999999998765
No 418
>3hhl_A RPA0582; alpha-beta-barrel, structural genomics, PSI-2, protein struc initiative, reductive methylation; HET: MLY MLZ PGE 2PE PE8 1PE PG4; 2.65A {Rhodopseudomonas palustris} PDB: 3hhl_B* 3hhl_C* 3dca_A
Probab=21.02 E-value=2.8e+02 Score=24.20 Aligned_cols=52 Identities=8% Similarity=0.026 Sum_probs=37.2
Q ss_pred cchhhHHHHHHHHHHHhhccCCeeEEE-----EeccC----CCcEEEEEeCCHHHHHHHHH
Q 009565 435 ADENLRSELEADVQEECVKIGPVDSVK-----VCENH----PQGVVLVRFKDRKDAQKCIE 486 (532)
Q Consensus 435 ~D~~l~~ei~edLre~fskfG~V~~V~-----l~~~~----~kG~aFV~F~s~eeA~kAi~ 486 (532)
.|++.+..+.+.+...+.+||--.-+. +.... ...++.|+|.|.+.|..|..
T Consensus 46 td~e~y~~Y~~~~~~~l~~~GG~~l~rG~~~~~lEG~~~e~~~~~viieFPS~~aa~a~y~ 106 (143)
T 3hhl_A 46 TGAEAYAAYGRDSGPVSERLGGXVVWQGQFELMLIGPQDEHWDHVFIAEYPSVAAFVEMIR 106 (143)
T ss_dssp BHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEESCTTCCCSEEEEEEESCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEeecCCceeEECCCCCCCCeEEEEECCCHHHHHHHHc
Confidence 567777888888999999998522111 11111 46689999999999998865
No 419
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=20.53 E-value=3.3e+02 Score=21.74 Aligned_cols=52 Identities=21% Similarity=0.199 Sum_probs=37.7
Q ss_pred cchhhHHHHHHHHHHHhhccCCeeEEE----Eecc--CCCcEEEEEeCCHHHHHHHHH
Q 009565 435 ADENLRSELEADVQEECVKIGPVDSVK----VCEN--HPQGVVLVRFKDRKDAQKCIE 486 (532)
Q Consensus 435 ~D~~l~~ei~edLre~fskfG~V~~V~----l~~~--~~kG~aFV~F~s~eeA~kAi~ 486 (532)
.|++.+.+..+.+...+.+||--.-+. +..+ .+...+.|+|.|.+.|.+|..
T Consensus 14 ~d~e~y~~Y~~~~~~~l~~~GG~~l~rg~~~~lEG~~~~~~~viieFps~~aa~a~y~ 71 (94)
T 3lo3_A 14 KDAEKLQQYGARVASTLAKYSGEVLVKGSVEQLHGKFEHKAQVILEFPSREDAYNWYH 71 (94)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTCEEEEEEECEEEESCCCCSEEEEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEcccccccCCCCCCeEEEEECCCHHHHHHHHC
Confidence 456667888899999999998432222 1122 356689999999999999875
Done!