Query 009566
Match_columns 532
No_of_seqs 326 out of 2129
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 08:04:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009566.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009566hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3krm_A Insulin-like growth fac 99.9 5E-25 1.7E-29 200.8 14.5 155 42-215 2-157 (163)
2 2anr_A Neuro-oncological ventr 99.9 2.2E-25 7.6E-30 206.1 11.1 161 40-216 3-177 (178)
3 2jzx_A Poly(RC)-binding protei 99.9 2.1E-24 7.2E-29 196.0 11.4 155 41-214 3-159 (160)
4 1j4w_A FUSE binding protein; s 99.9 6.1E-24 2.1E-28 195.6 12.9 156 42-212 2-174 (174)
5 2jvz_A KH type-splicing, FAR u 99.9 6E-24 2.1E-28 193.9 9.8 154 43-214 2-160 (164)
6 3krm_A Insulin-like growth fac 99.9 3.7E-23 1.3E-27 188.4 13.4 154 284-446 3-158 (163)
7 2anr_A Neuro-oncological ventr 99.9 2.6E-23 9E-28 192.2 11.7 159 281-445 3-176 (178)
8 3n89_A Defective in GERM LINE 99.9 7.5E-23 2.6E-27 205.5 13.7 230 135-443 25-260 (376)
9 1j4w_A FUSE binding protein; s 99.9 2E-22 6.8E-27 185.5 12.3 154 284-442 3-174 (174)
10 2jvz_A KH type-splicing, FAR u 99.9 6.7E-22 2.3E-26 180.3 14.1 154 284-445 2-161 (164)
11 2jzx_A Poly(RC)-binding protei 99.9 2.7E-22 9.1E-27 182.1 11.0 154 282-444 3-159 (160)
12 3n89_A Defective in GERM LINE 99.8 1.6E-20 5.4E-25 188.6 15.9 291 39-438 26-335 (376)
13 2qnd_A FMR1 protein; KH domain 99.7 2.3E-18 7.9E-23 152.4 9.2 137 283-444 3-142 (144)
14 2qnd_A FMR1 protein; KH domain 99.7 2.8E-17 9.5E-22 145.5 10.1 137 42-214 3-142 (144)
15 2e3u_A PH-DIM2P, hypothetical 99.6 2.2E-15 7.5E-20 141.7 9.0 141 44-215 35-192 (219)
16 1dtj_A RNA-binding neurooncolo 99.5 9.7E-15 3.3E-19 114.7 7.1 73 370-444 3-75 (76)
17 2hh2_A KH-type splicing regula 99.5 7.6E-15 2.6E-19 122.9 6.7 73 371-445 8-80 (107)
18 2axy_A Poly(RC)-binding protei 99.5 7.6E-15 2.6E-19 114.1 5.9 70 369-445 4-73 (73)
19 2e3u_A PH-DIM2P, hypothetical 99.5 1.7E-14 5.8E-19 135.7 8.9 141 285-445 35-192 (219)
20 1zzk_A Heterogeneous nuclear r 99.5 3.5E-14 1.2E-18 113.1 8.4 73 368-445 5-77 (82)
21 2p2r_A Poly(RC)-binding protei 99.5 1.4E-14 4.9E-19 113.6 5.9 72 369-445 4-75 (76)
22 1wvn_A Poly(RC)-binding protei 99.5 2.2E-14 7.7E-19 114.2 6.2 72 369-445 5-76 (82)
23 1ec6_A RNA-binding protein NOV 99.5 3.3E-14 1.1E-18 114.6 6.0 77 370-448 3-79 (87)
24 1j5k_A Heterogeneous nuclear r 99.5 4.9E-14 1.7E-18 114.0 5.8 74 367-445 11-84 (89)
25 1x4n_A FAR upstream element bi 99.5 7.7E-14 2.6E-18 113.5 6.8 74 368-446 13-86 (92)
26 2opv_A KHSRP protein; KH domai 99.5 1.5E-13 5E-18 110.2 8.2 74 368-444 12-85 (85)
27 2hh3_A KH-type splicing regula 99.4 1.2E-13 4E-18 115.1 7.2 72 370-446 11-82 (106)
28 2dgr_A Ring finger and KH doma 99.4 4.9E-14 1.7E-18 111.8 4.3 69 368-444 8-76 (83)
29 2axy_A Poly(RC)-binding protei 99.4 1.2E-13 4.1E-18 107.3 6.1 71 138-215 3-73 (73)
30 1x4m_A FAR upstream element bi 99.4 1.1E-13 3.7E-18 113.2 5.6 75 368-445 13-87 (94)
31 1tua_A Hypothetical protein AP 99.4 6.8E-13 2.3E-17 121.6 10.8 64 142-215 6-74 (191)
32 1zzk_A Heterogeneous nuclear r 99.4 6.2E-13 2.1E-17 105.8 8.1 73 39-124 3-75 (82)
33 1we8_A Tudor and KH domain con 99.4 4.6E-13 1.6E-17 111.5 7.5 76 368-446 13-88 (104)
34 1tua_A Hypothetical protein AP 99.4 3E-13 1E-17 123.9 6.6 141 45-214 6-160 (191)
35 1wvn_A Poly(RC)-binding protei 99.4 4.5E-13 1.5E-17 106.6 6.4 72 40-124 3-74 (82)
36 2p2r_A Poly(RC)-binding protei 99.4 3.3E-13 1.1E-17 105.8 5.5 71 41-124 3-73 (76)
37 1dtj_A RNA-binding neurooncolo 99.4 6.6E-13 2.3E-17 104.1 7.2 74 139-214 2-75 (76)
38 1j5k_A Heterogeneous nuclear r 99.3 9.4E-13 3.2E-17 106.4 5.8 72 39-123 10-81 (89)
39 1x4n_A FAR upstream element bi 99.3 2.2E-12 7.4E-17 104.9 7.9 72 40-124 12-83 (92)
40 2ctm_A Vigilin; K homology typ 99.3 1.8E-12 6.2E-17 105.7 7.0 74 368-447 15-88 (95)
41 2opv_A KHSRP protein; KH domai 99.3 3.5E-12 1.2E-16 102.1 8.3 75 137-214 11-85 (85)
42 2cte_A Vigilin; K homology typ 99.3 1.4E-12 4.9E-17 106.4 6.1 71 369-446 16-86 (94)
43 1vig_A Vigilin; RNA-binding pr 99.3 1.1E-12 3.9E-17 101.1 5.0 67 369-442 4-70 (71)
44 2ctl_A Vigilin; K homology typ 99.3 3E-12 1E-16 104.9 7.7 73 369-445 16-88 (97)
45 1ec6_A RNA-binding protein NOV 99.3 1.6E-12 5.4E-17 104.7 5.6 74 140-215 3-76 (87)
46 1x4m_A FAR upstream element bi 99.3 2.2E-12 7.4E-17 105.4 5.6 77 136-215 11-87 (94)
47 2dgr_A Ring finger and KH doma 99.3 1.3E-12 4.5E-17 103.5 4.1 71 136-214 6-76 (83)
48 2hh3_A KH-type splicing regula 99.3 4.7E-12 1.6E-16 105.4 6.6 71 140-215 11-81 (106)
49 2hh2_A KH-type splicing regula 99.3 4.3E-12 1.5E-16 106.1 6.4 73 141-215 8-80 (107)
50 1we8_A Tudor and KH domain con 99.2 1.6E-11 5.4E-16 102.2 8.2 79 136-217 11-89 (104)
51 2ctk_A Vigilin; K homology typ 99.2 7.6E-12 2.6E-16 103.8 6.0 71 369-446 16-86 (104)
52 2ctm_A Vigilin; K homology typ 99.2 1.4E-11 4.9E-16 100.4 6.3 74 135-214 12-85 (95)
53 1vig_A Vigilin; RNA-binding pr 99.2 1.2E-11 4.3E-16 95.2 5.0 68 138-212 3-70 (71)
54 2cte_A Vigilin; K homology typ 99.2 1.9E-11 6.5E-16 99.7 5.8 73 136-215 13-85 (94)
55 2ctl_A Vigilin; K homology typ 99.2 3.7E-11 1.3E-15 98.4 6.9 73 138-214 15-87 (97)
56 2ctj_A Vigilin; K homology typ 99.1 5E-11 1.7E-15 97.0 5.7 72 368-446 15-87 (95)
57 2ctf_A Vigilin; K homology typ 99.1 2.5E-10 8.7E-15 94.1 7.3 68 369-446 26-94 (102)
58 2ctk_A Vigilin; K homology typ 99.0 1.4E-10 4.9E-15 96.1 5.2 69 139-214 16-84 (104)
59 2ctj_A Vigilin; K homology typ 99.0 2.3E-10 8E-15 93.0 5.0 73 135-214 12-85 (95)
60 2ctf_A Vigilin; K homology typ 99.0 5.8E-10 2E-14 92.0 6.4 66 139-214 26-92 (102)
61 2cpq_A FragIle X mental retard 98.9 7.9E-10 2.7E-14 88.1 4.3 64 368-441 13-78 (91)
62 2yqr_A KIAA0907 protein; struc 98.7 3.8E-08 1.3E-12 82.9 8.3 78 368-445 10-100 (119)
63 1k1g_A SF1-BO isoform; splicin 98.7 3.6E-08 1.2E-12 84.9 8.0 76 369-444 6-99 (131)
64 2cpq_A FragIle X mental retard 98.6 2.7E-08 9.4E-13 79.2 4.5 67 136-212 11-79 (91)
65 1k1g_A SF1-BO isoform; splicin 98.3 1.2E-06 4.2E-11 75.2 8.0 77 138-214 5-99 (131)
66 2bl5_A MGC83862 protein, quaki 98.3 2.8E-07 9.6E-12 79.6 3.0 75 370-444 2-101 (140)
67 2yqr_A KIAA0907 protein; struc 98.2 4.4E-06 1.5E-10 70.3 7.7 77 138-214 10-99 (119)
68 3u1k_A Polyribonucleotide nucl 98.0 6E-06 2.1E-10 89.2 7.1 95 107-212 534-629 (630)
69 2bl5_A MGC83862 protein, quaki 97.9 9.7E-06 3.3E-10 70.0 5.3 76 140-215 2-102 (140)
70 3u1k_A Polyribonucleotide nucl 97.9 5.1E-06 1.8E-10 89.7 3.8 63 369-442 566-629 (630)
71 3v69_A Protein filia; RNA-bind 97.8 3.5E-05 1.2E-09 65.0 6.8 68 372-445 58-125 (140)
72 2cxc_A NUSA; transcription ter 97.4 7.2E-05 2.5E-09 65.0 3.7 103 285-406 37-139 (144)
73 4aid_A Polyribonucleotide nucl 97.4 6E-05 2.1E-09 82.3 3.1 97 107-214 537-634 (726)
74 2cxc_A NUSA; transcription ter 97.3 0.00016 5.6E-09 62.7 4.3 104 43-176 36-139 (144)
75 4aid_A Polyribonucleotide nucl 97.3 6.3E-05 2.2E-09 82.1 1.9 66 369-445 569-635 (726)
76 3v69_A Protein filia; RNA-bind 97.0 0.0014 4.7E-08 55.4 6.6 67 142-214 58-124 (140)
77 2asb_A Transcription elongatio 95.9 0.0079 2.7E-07 56.7 5.2 96 293-409 126-223 (251)
78 2asb_A Transcription elongatio 95.7 0.016 5.4E-07 54.7 6.3 98 52-180 126-224 (251)
79 1k0r_A NUSA; two component arr 95.5 0.012 4.2E-07 58.7 5.4 96 293-409 249-346 (366)
80 1k0r_A NUSA; two component arr 95.3 0.008 2.7E-07 60.0 3.0 97 52-179 249-346 (366)
81 3cdi_A Polynucleotide phosphor 95.2 0.0036 1.2E-07 68.7 0.1 65 369-444 559-624 (723)
82 3cdi_A Polynucleotide phosphor 95.0 0.0056 1.9E-07 67.1 1.2 96 107-213 527-623 (723)
83 1hh2_P NUSA, N utilization sub 94.4 0.055 1.9E-06 53.8 6.5 95 293-408 245-341 (344)
84 1e3p_A Guanosine pentaphosphat 94.2 0.0043 1.5E-07 68.3 -2.3 94 107-212 566-660 (757)
85 1e3p_A Guanosine pentaphosphat 94.1 0.0026 9E-08 70.0 -4.3 63 369-442 597-660 (757)
86 1hh2_P NUSA, N utilization sub 93.6 0.12 4.1E-06 51.3 7.1 96 52-178 245-341 (344)
87 2pt7_G HP1451, hypothetical pr 71.7 1.5 5E-05 38.2 1.6 30 44-73 34-63 (152)
88 1wh9_A 40S ribosomal protein S 62.8 2.5 8.5E-05 33.3 1.2 28 45-72 37-64 (92)
89 1wh9_A 40S ribosomal protein S 56.6 3.3 0.00011 32.6 0.9 28 371-398 36-63 (92)
90 2kl8_A OR15; structural genomi 51.1 34 0.0012 24.5 5.3 28 418-445 40-67 (85)
91 2pt7_G HP1451, hypothetical pr 49.9 8.9 0.0003 33.1 2.6 30 285-314 34-63 (152)
92 3ukx_C Bimax2 peptide; arm rep 45.8 18 0.00061 20.6 2.5 23 4-27 3-25 (28)
93 3gku_A Probable RNA-binding pr 37.1 10 0.00036 35.0 1.1 32 45-76 94-125 (225)
94 2ba0_A Archeal exosome RNA bin 33.9 49 0.0017 30.5 5.2 50 372-432 138-187 (229)
95 4hhu_A OR280; engineered prote 32.7 86 0.0029 25.3 5.6 46 391-445 104-149 (170)
96 4hhu_A OR280; engineered prote 29.8 86 0.0029 25.3 5.2 47 391-446 23-69 (170)
97 3j20_C 30S ribosomal protein S 28.2 20 0.00068 32.7 1.4 28 45-72 42-69 (210)
98 2xzm_C KH domain containing pr 28.2 22 0.00074 33.2 1.6 28 45-72 49-76 (243)
99 3u5c_D RP13, YS3, 40S ribosoma 28.2 17 0.00058 33.8 0.9 28 45-72 46-73 (240)
100 3gku_A Probable RNA-binding pr 28.0 9.5 0.00032 35.3 -0.8 65 142-214 94-159 (225)
101 2pk2_A Cyclin-T1, protein TAT; 27.6 13 0.00044 37.1 0.0 21 197-217 79-99 (358)
102 3u5c_D RP13, YS3, 40S ribosoma 26.7 21 0.00072 33.1 1.3 28 371-398 45-72 (240)
103 3iev_A GTP-binding protein ERA 26.5 21 0.00072 34.4 1.4 39 367-405 237-284 (308)
104 2z0s_A Probable exosome comple 26.3 90 0.0031 28.7 5.6 52 372-434 150-202 (235)
105 3iz6_B 40S ribosomal protein S 25.4 17 0.00059 33.5 0.4 28 45-72 46-73 (227)
106 3j20_C 30S ribosomal protein S 25.3 21 0.00071 32.5 0.9 27 371-397 41-67 (210)
107 2xzm_C KH domain containing pr 25.1 26 0.00087 32.7 1.5 29 370-398 47-75 (243)
108 2pk2_A Cyclin-T1, protein TAT; 24.8 15 0.00053 36.4 0.0 19 427-445 230-248 (358)
109 2ba0_A Archeal exosome RNA bin 24.0 1.2E+02 0.0041 27.8 6.0 59 142-211 138-196 (229)
110 3r8n_C 30S ribosomal protein S 23.5 17 0.00058 33.1 -0.0 27 45-71 63-89 (206)
111 3iz6_B 40S ribosomal protein S 22.9 21 0.00073 32.9 0.5 28 371-398 45-72 (227)
112 3iev_A GTP-binding protein ERA 22.1 34 0.0012 32.9 1.9 37 42-78 239-284 (308)
113 3i1m_C 30S ribosomal protein S 21.6 19 0.00066 33.3 -0.0 27 45-71 64-90 (233)
114 3dhx_A Methionine import ATP-b 21.5 1.2E+02 0.0041 24.0 4.8 51 160-211 36-88 (106)
115 1go3_E DNA-directed RNA polyme 21.5 45 0.0015 29.5 2.4 36 369-407 6-53 (187)
116 2zkq_c 40S ribosomal protein S 21.5 20 0.00068 33.4 0.0 28 45-72 46-73 (243)
No 1
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.92 E-value=5e-25 Score=200.79 Aligned_cols=155 Identities=25% Similarity=0.407 Sum_probs=130.0
Q ss_pred ceEEEEEecCCccceEecCCchHHHHHHHHhCCeEEEcCC-CCCCCceEEEEEcCCccccccccCcccCCHHHHHHHHHH
Q 009566 42 DTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGET-VPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVH 120 (532)
Q Consensus 42 ~~~~~i~vp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~-~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~ 120 (532)
.-+++|+||.+++|.||||+|++|++|+++|||+|+|++. .+++.+|+|+|+|+++. +.+|..+++
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~-------------v~~A~~~I~ 68 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEA-------------QFKAQGRIY 68 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHH-------------HHHHHHHHH
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHH-------------HHHHHHHHH
Confidence 4578999999999999999999999999999999999875 67889999999998766 567777777
Q ss_pred HHHHHhhhcCCCCCCCCCceEEEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCCCCCcccCCCCceEEEEcCHHH
Q 009566 121 DRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASV 200 (532)
Q Consensus 121 ~~i~~~~~~~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~ 200 (532)
+.+.+..... ......++++|+||..++++||||+|++|++|+++|||+|.|..+ ..|. ...++.|+|+|++++
T Consensus 69 ~~~~e~~~~~---~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~-~~~~--~~~~~~v~I~G~~~~ 142 (163)
T 3krm_A 69 GKLKEENFFG---PKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRD-QTPD--ENDQVIVKIIGHFYA 142 (163)
T ss_dssp HHHHHTTSSC---SSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTT-CCCC--TTSEEEEEEEECHHH
T ss_pred HHHhcccccc---cccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCC-CCCC--CCCceEEEEEeCHHH
Confidence 7665543221 123456788999999999999999999999999999999999754 3343 133458999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 009566 201 VKKALCQIASRLHDN 215 (532)
Q Consensus 201 v~~A~~~I~~~l~~~ 215 (532)
|.+|+.+|.+++.+.
T Consensus 143 v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 143 SQMAQRKIRDILAQV 157 (163)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999874
No 2
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.92 E-value=2.2e-25 Score=206.10 Aligned_cols=161 Identities=24% Similarity=0.427 Sum_probs=128.6
Q ss_pred CCceEEEEEecCCccceEecCCchHHHHHHHHhCCeEEEcCC---CCCCCceEEEEEcCCccccccccCcccCCHHHHHH
Q 009566 40 PEDTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGET---VPGSEERVVTVYSASDETNAFEDGDKFVSPAQDAL 116 (532)
Q Consensus 40 ~~~~~~~i~vp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~---~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~ 116 (532)
+++++++|+||.+++|.||||+|++|++|+++|+|+|+|.+. .+++.+|+|+|+|++++ +.+|.
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~-------------v~~A~ 69 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEA-------------LNAVH 69 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHH-------------HHHHH
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHH-------------HHHHH
Confidence 568999999999999999999999999999999999999854 46788999999998766 34555
Q ss_pred HHHHHHHHHhhhcCC-----------CCCCCCCceEEEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCCCCCccc
Q 009566 117 FKVHDRVIAEELRGD-----------EDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCA 185 (532)
Q Consensus 117 ~~i~~~i~~~~~~~~-----------~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~ 185 (532)
.++.+.+.+...... .........+++|+||.+++++||||+|.+|++|+++|||+|.|.++.. +.
T Consensus 70 ~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~---~~ 146 (178)
T 2anr_A 70 GFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPD---GI 146 (178)
T ss_dssp HHHHHHHTCCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC------
T ss_pred HHHHHHHhccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCC---CC
Confidence 555554432110000 0001223578999999999999999999999999999999999987543 22
Q ss_pred CCCCceEEEEcCHHHHHHHHHHHHHHHhcCC
Q 009566 186 LRSDELVQISGEASVVKKALCQIASRLHDNP 216 (532)
Q Consensus 186 ~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~ 216 (532)
...++.|+|+|+.++|.+|+.+|.++|.++|
T Consensus 147 ~~~~~~v~I~G~~~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 147 NLQNRVVTVSGEPEQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp -CCEEEEEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred CCCceEEEEEcCHHHHHHHHHHHHHHHHhCC
Confidence 3678999999999999999999999999875
No 3
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.91 E-value=2.1e-24 Score=196.05 Aligned_cols=155 Identities=29% Similarity=0.471 Sum_probs=128.7
Q ss_pred CceEEEEEecCCccceEecCCchHHHHHHHHhCCeEEEcCCCCCCCceEEEEEcCCccccccccCcccCCHHHHHHHHHH
Q 009566 41 EDTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVH 120 (532)
Q Consensus 41 ~~~~~~i~vp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~ 120 (532)
..++++|+||.+++|.||||+|++|++|+++|||+|+|++. ++++|+|+|+|+.++ +.+|..++.
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~~~-------------v~~A~~~I~ 67 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNA-------------IFKAFAMII 67 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEHHH-------------HHHHHHHHH
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCHHH-------------HHHHHHHHH
Confidence 46789999999999999999999999999999999999876 678999999998665 456777777
Q ss_pred HHHHHhhhcCCC--CCCCCCceEEEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCCCCCcccCCCCceEEEEcCH
Q 009566 121 DRVIAEELRGDE--DSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEA 198 (532)
Q Consensus 121 ~~i~~~~~~~~~--~~~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~ 198 (532)
+.+.+....... .......++++|+||.+++++||||+|.+|++|+++|||+|.|.++ ..| .+.++.|+|+|++
T Consensus 68 ~~i~e~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~-~~~---~~~~~~v~I~G~~ 143 (160)
T 2jzx_A 68 DKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD-MLP---NSTERAITIAGIP 143 (160)
T ss_dssp HHHHHHHTSCCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCC-CST---TCCEEEEEEEECH
T ss_pred HHHHhhccccCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCC-CCC---CCCceEEEEEcCH
Confidence 665543221100 0122346899999999999999999999999999999999999753 334 3678999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 009566 199 SVVKKALCQIASRLHD 214 (532)
Q Consensus 199 ~~v~~A~~~I~~~l~~ 214 (532)
++|.+|+.+|.+++.+
T Consensus 144 ~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 144 QSIIECVKQICVVMLE 159 (160)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999876
No 4
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.90 E-value=6.1e-24 Score=195.63 Aligned_cols=156 Identities=24% Similarity=0.399 Sum_probs=122.9
Q ss_pred ceEEEEEecCCccceEecCCchHHHHHHHHhCCeEEEcCCCCCCCceEEEEEcCCccccccccCcccCCHHHHHHHHHHH
Q 009566 42 DTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHD 121 (532)
Q Consensus 42 ~~~~~i~vp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~~ 121 (532)
..+++|+||.+++|.||||+|++|++|+++|+|+|+|.+..+++++|+|+|+|++++ +.+|+.+|.+
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~-------------v~~A~~~I~~ 68 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDR-------------AQHAAEIITD 68 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHH-------------HHHHHHHHHH
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHH-------------HHHHHHHHHH
Confidence 467899999999999999999999999999999999987666788999999999766 3455555554
Q ss_pred HHHHhhhcC----------------CCC-CCCCCceEEEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCCCCCcc
Q 009566 122 RVIAEELRG----------------DED-SDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184 (532)
Q Consensus 122 ~i~~~~~~~----------------~~~-~~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~ 184 (532)
.+.+..... +.. ......++++|+||..++++||||+|.+|++|+++|||+|.|..+. +.+
T Consensus 69 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~--~~~ 146 (174)
T 1j4w_A 69 LLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP--PPN 146 (174)
T ss_dssp HHHHHC-----------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC--TTT
T ss_pred HHHhcccCCCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC--CCC
Confidence 443221000 000 0012346889999999999999999999999999999999998642 334
Q ss_pred cCCCCceEEEEcCHHHHHHHHHHHHHHH
Q 009566 185 ALRSDELVQISGEASVVKKALCQIASRL 212 (532)
Q Consensus 185 ~~~~~r~v~I~G~~~~v~~A~~~I~~~l 212 (532)
..+.++.|+|+|+.++|.+|+.+|.++|
T Consensus 147 ~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 147 ADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp SCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred CCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 4567899999999999999999999874
No 5
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.90 E-value=6e-24 Score=193.88 Aligned_cols=154 Identities=23% Similarity=0.376 Sum_probs=123.0
Q ss_pred eEEEEEecCCccceEecCCchHHHHHHHHhCCeEEEcCC--CCCCCceEEEEEcCCccccccccCcccCCHHHHHHHHHH
Q 009566 43 TVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGET--VPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVH 120 (532)
Q Consensus 43 ~~~~i~vp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~--~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~ 120 (532)
++++|+||.+++|.||||+|++|++|+++|+|+|+|.+. .++..+|+|+|+|++++ +.+|+.++.
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~-------------v~~A~~~I~ 68 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYK-------------VQQACEMVM 68 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHH-------------HHHHHHHHH
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHH-------------HHHHHHHHH
Confidence 688999999999999999999999999999999999754 35677999999998766 456666666
Q ss_pred HHHHHhhhcC---CCCCCCCCceEEEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCCCCCcccCCCCceEEEEcC
Q 009566 121 DRVIAEELRG---DEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGE 197 (532)
Q Consensus 121 ~~i~~~~~~~---~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~ 197 (532)
+.+.+..... .........++++|+||..++++||||+|.+|++|+++|||+|.|.+... .+.++.|+|+|+
T Consensus 69 ~ii~e~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~-----~~~~~~v~I~G~ 143 (164)
T 2jvz_A 69 DILRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG-----TGPEKIAHIMGP 143 (164)
T ss_dssp HHTTCSSSCCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCT-----TSSEEEEEEESC
T ss_pred HHHHhccCCCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCC-----CCCcEEEEEEcC
Confidence 5543322100 00001111346889999999999999999999999999999999976532 245799999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 009566 198 ASVVKKALCQIASRLHD 214 (532)
Q Consensus 198 ~~~v~~A~~~I~~~l~~ 214 (532)
.++|.+|+.+|.+++.+
T Consensus 144 ~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 144 PDRCEHAARIINDLLQS 160 (164)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999999875
No 6
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.89 E-value=3.7e-23 Score=188.38 Aligned_cols=154 Identities=21% Similarity=0.333 Sum_probs=119.3
Q ss_pred EEEEEEeecCcccccccCCchhHHHHHhhhCCeEEecCC-CCCCCCeEEEEecCcchhhhhhHHHHHHHHhccccccc-c
Q 009566 284 FSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSS-STEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEK-I 361 (532)
Q Consensus 284 ~~~~v~vp~~~~g~iIGk~G~~Ik~i~~~sga~I~i~~~-~~~~~e~vi~i~g~~~~~~~~~~~~~a~~~~~~~~~~~-~ 361 (532)
.+++|+||.+++|.|||++|++|++|+++|||+|+|++. .++..+++|+|+|... .+..+...++... .+. .
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e---~v~~A~~~I~~~~---~e~~~ 76 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPE---AQFKAQGRIYGKL---KEENF 76 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHH---HHHHHHHHHHHHH---HHTTS
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHH---HHHHHHHHHHHHH---hcccc
Confidence 478999999999999999999999999999999999985 3566889999999642 1122222222211 111 1
Q ss_pred cccCCCcceEEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHH
Q 009566 362 ERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTR 441 (532)
Q Consensus 362 ~~~~~~~~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~ 441 (532)
.........+.+|.||.+++|+||||+|++|++|+++|||+|+|... ..|. ..+++.|+|+|++++|+.|+.+|.++
T Consensus 77 ~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~-~~~~--~~~~~~v~I~G~~~~v~~A~~~I~~~ 153 (163)
T 3krm_A 77 FGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRD-QTPD--ENDQVIVKIIGHFYASQMAQRKIRDI 153 (163)
T ss_dssp SCSSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTT-CCCC--TTSEEEEEEEECHHHHHHHHHHHHHH
T ss_pred cccccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCC-CCCC--CCCceEEEEEeCHHHHHHHHHHHHHH
Confidence 11122345778999999999999999999999999999999999653 3443 23345899999999999999999999
Q ss_pred HHhcc
Q 009566 442 LRANL 446 (532)
Q Consensus 442 l~~~~ 446 (532)
|++..
T Consensus 154 i~~~~ 158 (163)
T 3krm_A 154 LAQVK 158 (163)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 98753
No 7
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.89 E-value=2.6e-23 Score=192.15 Aligned_cols=159 Identities=21% Similarity=0.377 Sum_probs=120.8
Q ss_pred CceEEEEEEeecCcccccccCCchhHHHHHhhhCCeEEecCCC---CCCCCeEEEEecCcchhhhhhHHHHHHHHhcccc
Q 009566 281 SKEFSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSS---TEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRC 357 (532)
Q Consensus 281 ~~~~~~~v~vp~~~~g~iIGk~G~~Ik~i~~~sga~I~i~~~~---~~~~e~vi~i~g~~~~~~~~~~~~~a~~~~~~~~ 357 (532)
..+++++|+||.+++|.|||++|++|++|+++|||+|+|++.. +...+++++|+|... .+..+.+.+.......
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~---~v~~A~~~I~~~~~~~ 79 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIE---ALNAVHGFIAEKIREM 79 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHH---HHHHHHHHHHHHHTCC
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHH---HHHHHHHHHHHHHhcc
Confidence 3568999999999999999999999999999999999998642 346789999999642 2222333333222111
Q ss_pred cccc------------cccCCCcceEEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEE
Q 009566 358 SEKI------------ERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQIS 425 (532)
Q Consensus 358 ~~~~------------~~~~~~~~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~ 425 (532)
.... .....+...+.+|.||.+++|+||||+|++|++|+++|||+|+|.+....| .+++++|+|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~---~~~~~~v~I~ 156 (178)
T 2anr_A 80 PQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI---NLQNRVVTVS 156 (178)
T ss_dssp CCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-------CCEEEEEEE
T ss_pred CCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCC---CCCceEEEEE
Confidence 0000 000112347889999999999999999999999999999999997654333 4678999999
Q ss_pred cCHHHHHHHHHHHHHHHHhc
Q 009566 426 GDLDLAKDALIQVMTRLRAN 445 (532)
Q Consensus 426 G~~~~v~~A~~~I~~~l~~~ 445 (532)
|++++|++|+.+|.++|.+.
T Consensus 157 G~~~~v~~A~~~I~~~i~e~ 176 (178)
T 2anr_A 157 GEPEQNRKAVELIIQKIQED 176 (178)
T ss_dssp SSHHHHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999874
No 8
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.89 E-value=7.5e-23 Score=205.50 Aligned_cols=230 Identities=16% Similarity=0.125 Sum_probs=156.9
Q ss_pred CCCCceEEEEEEeCCceeeeeccCc--hHHHHHHhhhCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHH
Q 009566 135 DGGHQVTAKLLVPSDQIGCVIGKGG--QIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRL 212 (532)
Q Consensus 135 ~~~~~~~~~l~vp~~~~g~iIGk~G--~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l 212 (532)
...+.+|+++.||..+|.+||||+| ++|++|+++|+|+|+|+....-..........|+|+|..++|++|+.+|.+++
T Consensus 25 ~~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l~ 104 (376)
T 3n89_A 25 INPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNC 104 (376)
T ss_dssp CCTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHSC
T ss_pred ecCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhcC
Confidence 3467899999999999999999999 99999999999999997643000000134568999999999999999988743
Q ss_pred hcCCCCccccccccccCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEEEEeec
Q 009566 213 HDNPSRSQHLLASAISNSHSSSGSLVGPTAATPIVGIAPLMGPYGGYKGDTAGDWSRSLYSAPRDDLSSKEFSLRLVCPV 292 (532)
Q Consensus 213 ~~~~~~~~~~~~s~~~~~~~~~g~~~~p~~g~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vp~ 292 (532)
.+++.+.+|.
T Consensus 105 ----------------------------------------------------------------------Pl~i~~elp~ 114 (376)
T 3n89_A 105 ----------------------------------------------------------------------HFTVFMALSK 114 (376)
T ss_dssp ----------------------------------------------------------------------EEEEEEECTT
T ss_pred ----------------------------------------------------------------------CceEEEEccc
Confidence 1234444444
Q ss_pred CcccccccCCchhHHHHHhhhCCeEEecCCCC-C-CCCeEEEEecCcchhhhhhHHHHHHHHhcccccccccccCCCcce
Q 009566 293 ANIGGVIGKGGAIINQIRQESGAAIKVDSSST-E-GDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGLISF 370 (532)
Q Consensus 293 ~~~g~iIGk~G~~Ik~i~~~sga~I~i~~~~~-~-~~e~vi~i~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 370 (532)
..+.. ...+..|.+ ++.+++.|.|+.... . .....|+|+|.+.-. ..+.+|+..+...+.+. .......+
T Consensus 115 ~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~~~~sd~V~IrG~~~nv---~~akeA~~~Ll~~l~~~--e~~~~~~~ 186 (376)
T 3n89_A 115 MKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKNGIVTTYLRITAREKNQ---HELIEAAKRLNEILFRE--SPAPENNF 186 (376)
T ss_dssp CSSCH--HHHHHHHHH-CCCTTCEEEEEEEC-----CEEEEEEEEEGGGH---HHHHHHHHHHHHHHCC----CCCSSCE
T ss_pred cccCc--chhhhhhcc-ceeCceEEEeCCcccccCCCCCEEEEEcChhhH---HHHHHHHHHHHHHHHhh--hcccccce
Confidence 32221 111234444 567899999865421 1 124678999976322 23444444443332222 11123468
Q ss_pred EEEEEEecCcceeEecCCC--hhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHH
Q 009566 371 TTRLLVPTSRIGCLIGKGG--SIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLR 443 (532)
Q Consensus 371 ~~~i~VP~~~~G~IIGkgG--~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~ 443 (532)
++.|.|+..+|..|||++| ..|++|+++|||+|+++..++ +.....+...|+|+|+.++|..|+.+|+++|=
T Consensus 187 s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d-~~d~~~~~~~ItItGs~e~V~~Ark~I~~lLP 260 (376)
T 3n89_A 187 TLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNN-RNETRGNIYEIKVVGNIDNVLKARRYIMDLLP 260 (376)
T ss_dssp EEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC----------CCEEEEEEESCHHHHHHHHHHHHHTSE
T ss_pred EEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCC-cccccCCceEEEEEeCHHHHHHHHHHHHhhCC
Confidence 9999999999999999999 667999999999999865422 11001234689999999999999999998865
No 9
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.88 E-value=2e-22 Score=185.53 Aligned_cols=154 Identities=19% Similarity=0.294 Sum_probs=116.2
Q ss_pred EEEEEEeecCcccccccCCchhHHHHHhhhCCeEEecCCCCCCCCeEEEEecCcchhhhhhHHHHHHHHhccccccc---
Q 009566 284 FSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEK--- 360 (532)
Q Consensus 284 ~~~~v~vp~~~~g~iIGk~G~~Ik~i~~~sga~I~i~~~~~~~~e~vi~i~g~~~~~~~~~~~~~a~~~~~~~~~~~--- 360 (532)
.+++|+||.+++|.|||++|++|++|+++|||+|+|++..+...+++|+|+|... .+..+.+.+..+.......
T Consensus 3 ~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~---~v~~A~~~I~~~~~~~~~~~~~ 79 (174)
T 1j4w_A 3 HMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPD---RAQHAAEIITDLLRSVQAGNPG 79 (174)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHH---HHHHHHHHHHHHHHHHC-----
T ss_pred eEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHH---HHHHHHHHHHHHHHhcccCCCC
Confidence 5789999999999999999999999999999999998765566789999999742 2222222222211110000
Q ss_pred ---------------ccccCCCcceEEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEE
Q 009566 361 ---------------IERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQIS 425 (532)
Q Consensus 361 ---------------~~~~~~~~~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~ 425 (532)
+.........+.+|.||.+++|+||||+|++|++|+++|||+|+|.... |.+.++++++|+|+
T Consensus 80 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~--~~~~~~~~~~v~I~ 157 (174)
T 1j4w_A 80 GPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP--PPNADPNMKLFTIR 157 (174)
T ss_dssp ------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC--TTTSCTTEEEEEEE
T ss_pred CCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC--CCCCCCCceEEEEE
Confidence 0000001246889999999999999999999999999999999997542 33445678999999
Q ss_pred cCHHHHHHHHHHHHHHH
Q 009566 426 GDLDLAKDALIQVMTRL 442 (532)
Q Consensus 426 G~~~~v~~A~~~I~~~l 442 (532)
|++++|+.|+.+|.++|
T Consensus 158 G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 158 GTPQQIDYARQLIEEKI 174 (174)
T ss_dssp CCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999998864
No 10
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.87 E-value=6.7e-22 Score=180.28 Aligned_cols=154 Identities=18% Similarity=0.303 Sum_probs=118.5
Q ss_pred EEEEEEeecCcccccccCCchhHHHHHhhhCCeEEecCCC--CCCCCeEEEEecCcchhhhhhHHHHHHHHhccccccc-
Q 009566 284 FSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSS--TEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEK- 360 (532)
Q Consensus 284 ~~~~v~vp~~~~g~iIGk~G~~Ik~i~~~sga~I~i~~~~--~~~~e~vi~i~g~~~~~~~~~~~~~a~~~~~~~~~~~- 360 (532)
++++|+||.+++|.|||++|++|++|+++|||+|.+.+.. +...+++++|+|.. +.+..+.+.+..+.......
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~---~~v~~A~~~I~~ii~e~~~~~ 78 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDP---YKVQQACEMVMDILRERDQGG 78 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECH---HHHHHHHHHHHHHTTCSSSCC
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCH---HHHHHHHHHHHHHHHhccCCC
Confidence 5789999999999999999999999999999999997643 34568899999964 22333444444433222110
Q ss_pred ccc--c-CCCcceEEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHH
Q 009566 361 IER--D-SGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQ 437 (532)
Q Consensus 361 ~~~--~-~~~~~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~ 437 (532)
... + .....++.+|.||.+++|+||||+|++|++|+++|||+|+|.+.+ + .+.++.|+|+|++++|+.|+.+
T Consensus 79 ~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~--~---~~~~~~v~I~G~~~~v~~A~~~ 153 (164)
T 2jvz_A 79 FGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--G---TGPEKIAHIMGPPDRCEHAARI 153 (164)
T ss_dssp CSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC--T---TSSEEEEEEESCHHHHHHHHHH
T ss_pred CCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC--C---CCCcEEEEEEcCHHHHHHHHHH
Confidence 000 0 001135678999999999999999999999999999999997542 2 3457999999999999999999
Q ss_pred HHHHHHhc
Q 009566 438 VMTRLRAN 445 (532)
Q Consensus 438 I~~~l~~~ 445 (532)
|.++|++.
T Consensus 154 I~~~i~~~ 161 (164)
T 2jvz_A 154 INDLLQSL 161 (164)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 99998864
No 11
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.87 E-value=2.7e-22 Score=182.14 Aligned_cols=154 Identities=25% Similarity=0.436 Sum_probs=118.8
Q ss_pred ceEEEEEEeecCcccccccCCchhHHHHHhhhCCeEEecCCCCCCCCeEEEEecCcchhhhhhHHHHHHHHhccc-cccc
Q 009566 282 KEFSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPR-CSEK 360 (532)
Q Consensus 282 ~~~~~~v~vp~~~~g~iIGk~G~~Ik~i~~~sga~I~i~~~~~~~~e~vi~i~g~~~~~~~~~~~~~a~~~~~~~-~~~~ 360 (532)
.+++++|+||.+++|.|||++|++|++|+++|||+|+|++. +..+++++|+|... .+..+...++..... +...
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~~---~v~~A~~~I~~~i~e~~~~~ 77 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN---AIFKAFAMIIDKLEEDISSS 77 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEHH---HHHHHHHHHHHHHHHHHTSC
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCHH---HHHHHHHHHHHHHHhhcccc
Confidence 36799999999999999999999999999999999999975 34689999999731 222222222211110 0000
Q ss_pred ccc--cCCCcceEEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHH
Q 009566 361 IER--DSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQV 438 (532)
Q Consensus 361 ~~~--~~~~~~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I 438 (532)
... ......++.+|.||.+++|+||||+|++|++|+++|||+|+|.+ +..| .++++.|+|+|++++|+.|+.+|
T Consensus 78 ~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~-~~~~---~~~~~~v~I~G~~~~v~~A~~~I 153 (160)
T 2jzx_A 78 MTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQI 153 (160)
T ss_dssp CCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCC-CCST---TCCEEEEEEEECHHHHHHHHHHH
T ss_pred CCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECC-CCCC---CCCceEEEEEcCHHHHHHHHHHH
Confidence 000 01223588999999999999999999999999999999999965 3344 46789999999999999999999
Q ss_pred HHHHHh
Q 009566 439 MTRLRA 444 (532)
Q Consensus 439 ~~~l~~ 444 (532)
.++|.+
T Consensus 154 ~~~i~e 159 (160)
T 2jzx_A 154 CVVMLE 159 (160)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999876
No 12
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.84 E-value=1.6e-20 Score=188.64 Aligned_cols=291 Identities=11% Similarity=0.112 Sum_probs=179.9
Q ss_pred CCCceEEEEEecCCccceEecCCc--hHHHHHHHHhCCeEEEcCCC-----CCCCceEEEEEcCCccccccccCcccCCH
Q 009566 39 GPEDTVYRYLCPIRKIGSIIGRGG--EIVKQLRIDTKSKIRIGETV-----PGSEERVVTVYSASDETNAFEDGDKFVSP 111 (532)
Q Consensus 39 ~~~~~~~~i~vp~~~~g~IIGk~G--~~Ik~i~~~tga~I~i~~~~-----~~~~ervv~I~G~~~~~~~~~~~~~~v~~ 111 (532)
....+++.+.||..+|++||||+| ++|++|+++|+|+|+|++.. +......|+|+|.+++|
T Consensus 26 ~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enV------------ 93 (376)
T 3n89_A 26 NPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDV------------ 93 (376)
T ss_dssp CTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHH------------
T ss_pred cCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHH------------
Confidence 467899999999999999999999 99999999999999998764 11345789999998884
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCCceEEEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCCCCCcccCCCCce
Q 009566 112 AQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDEL 191 (532)
Q Consensus 112 a~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~ 191 (532)
.+|..++.+. ..+++.+.+|...+.. ..-...|.+ ++..+++|.|....+.. ......
T Consensus 94 -E~AR~~I~~l---------------~Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~---~~~sd~ 151 (376)
T 3n89_A 94 -DRARMLMRRN---------------CHFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKN---GIVTTY 151 (376)
T ss_dssp -HHHHHHHHHS---------------CEEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC--------CEEE
T ss_pred -HHHHHHHHhc---------------CCceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCccccc---CCCCCE
Confidence 3344334331 2345666666543222 111234544 56899999986643211 112457
Q ss_pred EEEEcCHHHHHHHHHHHHHHHhcCCCCccccccccccCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q 009566 192 VQISGEASVVKKALCQIASRLHDNPSRSQHLLASAISNSHSSSGSLVGPTAATPIVGIAPLMGPYGGYKGDTAGDWSRSL 271 (532)
Q Consensus 192 v~I~G~~~~v~~A~~~I~~~l~~~~~~~~~~~~s~~~~~~~~~g~~~~p~~g~~~~~~~p~~~~~g~~~~~~~~~~~~~~ 271 (532)
|+|+|...+|.+|++++..++.......
T Consensus 152 V~IrG~~~nv~~akeA~~~Ll~~l~~~e---------------------------------------------------- 179 (376)
T 3n89_A 152 LRITAREKNQHELIEAAKRLNEILFRES---------------------------------------------------- 179 (376)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHHHCC------------------------------------------------------
T ss_pred EEEEcChhhHHHHHHHHHHHHHHHHhhh----------------------------------------------------
Confidence 9999999777666555555543311000
Q ss_pred CCCCCCCCCCceEEEEEEeecCcccccccCCc--hhHHHHHhhhCCeEEecCCCCC----CCCeEEEEecCcchhhhhhH
Q 009566 272 YSAPRDDLSSKEFSLRLVCPVANIGGVIGKGG--AIINQIRQESGAAIKVDSSSTE----GDDCLITVSSKEFFEDTLSA 345 (532)
Q Consensus 272 ~~~~~~~~~~~~~~~~v~vp~~~~g~iIGk~G--~~Ik~i~~~sga~I~i~~~~~~----~~e~vi~i~g~~~~~~~~~~ 345 (532)
......+++.|.|+.++|..|||++| ..|++|+++|||+|.|++.... .....|+|+|+. +.+..
T Consensus 180 ------~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~---e~V~~ 250 (376)
T 3n89_A 180 ------PAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNI---DNVLK 250 (376)
T ss_dssp ------CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESCH---HHHHH
T ss_pred ------cccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCH---HHHHH
Confidence 00123478999999999999999999 5669999999999999975321 234589999975 33344
Q ss_pred HHHHHHHhcccccccccccCCCcceEEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCC---ceE
Q 009566 346 TIEAVVRLQPRCSEKIERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDD---EMV 422 (532)
Q Consensus 346 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~---r~V 422 (532)
+.+.++.+.| +.+.|.++.+.+-.-.-.--..|-.+-++.++.|.|.++..-|..--+++ ..|
T Consensus 251 Ark~I~~lLP--------------v~l~Fd~~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 316 (376)
T 3n89_A 251 ARRYIMDLLP--------------ISMCFNIKNTDMAEPSRVSDRNIHMIIDESGIILKMTPSVYEPADLLSGEVPLNCA 316 (376)
T ss_dssp HHHHHHHTSE--------------EEEEEEEEGGGBC--------CBEEEECTTSCEEEEEEEEECCSSSSCCCEEEEEE
T ss_pred HHHHHHhhCC--------------EEEEEecCCcccccccccchhHHHHHHHhcCeEEEEeecCCCchhhcccccccceE
Confidence 5555555543 45555555442222222222233345578889999976532221000111 347
Q ss_pred EEEc---CHHHHHHHHHHH
Q 009566 423 QISG---DLDLAKDALIQV 438 (532)
Q Consensus 423 ~I~G---~~~~v~~A~~~I 438 (532)
.|.. +..++..|...+
T Consensus 317 ~~~s~e~n~~~~y~~~~~~ 335 (376)
T 3n89_A 317 SLRSKEFNIKKLYTAYQKV 335 (376)
T ss_dssp EEEEEGGGHHHHHHHHHHH
T ss_pred EEEEEeccHHHHHHHHHHH
Confidence 7887 445555555444
No 13
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.75 E-value=2.3e-18 Score=152.44 Aligned_cols=137 Identities=19% Similarity=0.278 Sum_probs=99.0
Q ss_pred eEEEEEEeecCcccccccCCchhHHHHHhhhCCeEEecCCCCCCCCeEEEEecCcchhhhhhHHHHHHHHhccccccccc
Q 009566 283 EFSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIE 362 (532)
Q Consensus 283 ~~~~~v~vp~~~~g~iIGk~G~~Ik~i~~~sga~I~i~~~~~~~~e~vi~i~g~~~~~~~~~~~~~a~~~~~~~~~~~~~ 362 (532)
.++.+|+||.+.+|++||++|++|+.|++++| |.+...+.+ ++ .+++.+... + .+..+..+..
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~~~-~~-~~i~~~~~p--~----~v~~~~~~l~------- 65 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLDED-TC-TFHIYGEDQ--D----AVKKARSFLE------- 65 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEETT-TT-EEEEEESSH--H----HHHHHHHHHC-------
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccCCC-ch-heeeccCCH--H----HHHHHHHhhh-------
Confidence 46889999999999999999999999999999 443322211 23 344444210 1 1222211110
Q ss_pred ccCCCcceEEEEEEecCcceeEecCCChhHHHHHHhhCc-eEEEecCCCCCCCCCCCCc--eEEEEcCHHHHHHHHHHHH
Q 009566 363 RDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKA-NIRILPKENLPKIASEDDE--MVQISGDLDLAKDALIQVM 439 (532)
Q Consensus 363 ~~~~~~~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga-~I~i~~~~~~P~~~~~~~r--~V~I~G~~~~v~~A~~~I~ 439 (532)
..+.++.||.+++|++|||+|++|+.|++.||| +|+|.+.++... ..+++ .|+|+|++++|+.|+.+|.
T Consensus 66 ------~~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~--~~~~~~~~vtI~G~~~~v~~Ak~li~ 137 (144)
T 2qnd_A 66 ------FAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV--PQEEGMVPFVFVGTKDSIANATVLLD 137 (144)
T ss_dssp ------EEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC--CCCTTEEEEEEEEEHHHHHHHHHHHH
T ss_pred ------cceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc--cccCCeeEEEEEeCHHHHHHHHHHHH
Confidence 113789999999999999999999999999997 999987543211 12233 5899999999999999999
Q ss_pred HHHHh
Q 009566 440 TRLRA 444 (532)
Q Consensus 440 ~~l~~ 444 (532)
++|.+
T Consensus 138 ~~l~~ 142 (144)
T 2qnd_A 138 YHLNY 142 (144)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99975
No 14
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.71 E-value=2.8e-17 Score=145.49 Aligned_cols=137 Identities=18% Similarity=0.230 Sum_probs=100.8
Q ss_pred ceEEEEEecCCccceEecCCchHHHHHHHHhCCeEEEcCCCCCCCceEEEEEcCCccccccccCcccCCHHHHHHHHHHH
Q 009566 42 DTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHD 121 (532)
Q Consensus 42 ~~~~~i~vp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~~ 121 (532)
.++.+|+||.+.+|++||++|++|++|+++++ |.+.+.. ..+++.+...++++.+ .++ ..++.
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~-~~~~~~i~~~~~p~~v-------------~~~-~~~l~ 65 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLD-EDTCTFHIYGEDQDAV-------------KKA-RSFLE 65 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEE-TTTTEEEEEESSHHHH-------------HHH-HHHHC
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccC-CCchheeeccCCHHHH-------------HHH-HHhhh
Confidence 46789999999999999999999999999999 5443221 2234444444444431 121 11111
Q ss_pred HHHHhhhcCCCCCCCCCceEEEEEEeCCceeeeeccCchHHHHHHhhhCc-eEEEecCCCCCcccCCCCc--eEEEEcCH
Q 009566 122 RVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGA-QIRILKDEHLPSCALRSDE--LVQISGEA 198 (532)
Q Consensus 122 ~i~~~~~~~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga-~I~i~~~~~~p~~~~~~~r--~v~I~G~~ 198 (532)
.....+.||..+++++|||+|.+|+.|++.||| +|+|.++++... ...++ .|+|+|+.
T Consensus 66 -----------------~~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~--~~~~~~~~vtI~G~~ 126 (144)
T 2qnd_A 66 -----------------FAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV--PQEEGMVPFVFVGTK 126 (144)
T ss_dssp -----------------EEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC--CCCTTEEEEEEEEEH
T ss_pred -----------------cceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc--cccCCeeEEEEEeCH
Confidence 013889999999999999999999999999997 999987643211 12343 58999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 009566 199 SVVKKALCQIASRLHD 214 (532)
Q Consensus 199 ~~v~~A~~~I~~~l~~ 214 (532)
++|..|+.+|.++|..
T Consensus 127 ~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 127 DSIANATVLLDYHLNY 142 (144)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999865
No 15
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.59 E-value=2.2e-15 Score=141.73 Aligned_cols=141 Identities=21% Similarity=0.193 Sum_probs=101.5
Q ss_pred EEEEEecCCccceEecCCchHHHHHHHHhCCeEEEcCCCCCCCceEEEEEcCCccccccccCcccCCHHHHHHHHHHHHH
Q 009566 44 VYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRV 123 (532)
Q Consensus 44 ~~~i~vp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~~~i 123 (532)
+.++.||.+.++.|||++|++|+.|+++|||+|.|+.. ++.|+|+++...- + ...+++|...|...+
T Consensus 35 i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~-----~g~V~I~~~~~t~-----d---~~~i~kA~~~I~~i~ 101 (219)
T 2e3u_A 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE-----TGEVWITSTKETE-----D---PLAVWKARDIVLAIG 101 (219)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT-----TCEEEEEECTTCC-----S---HHHHHHHHHHHHHHH
T ss_pred EEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC-----CCEEEEecCCCCC-----C---HHHHHHHHHHHHHHh
Confidence 45899999999999999999999999999999999632 5688998864110 0 011344444444322
Q ss_pred H----H--hhhcCCCCCCCCCceEEEEEEe-----C------CceeeeeccCchHHHHHHhhhCceEEEecCCCCCcccC
Q 009566 124 I----A--EELRGDEDSDGGHQVTAKLLVP-----S------DQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCAL 186 (532)
Q Consensus 124 ~----~--~~~~~~~~~~~~~~~~~~l~vp-----~------~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~ 186 (532)
. + ..+.. .......+.++ . ..+|+||||+|.+|+.|++.|||+|.|.
T Consensus 102 rg~~~e~g~~ll~------dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~---------- 165 (219)
T 2e3u_A 102 RGFSPERAFRLLN------EGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY---------- 165 (219)
T ss_dssp TTCCHHHHGGGGS------TTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE----------
T ss_pred ccCCccccceecc------CCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC----------
Confidence 0 0 11111 11111122222 1 2578999999999999999999999985
Q ss_pred CCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009566 187 RSDELVQISGEASVVKKALCQIASRLHDN 215 (532)
Q Consensus 187 ~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 215 (532)
++.|+|.|+.++|+.|..+|.++|...
T Consensus 166 --~~~v~i~G~~~~i~~A~~~i~~li~g~ 192 (219)
T 2e3u_A 166 --GKTVAIIGNPIQIEIAKTAIEKLARGS 192 (219)
T ss_dssp --TTEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred --CeEEEEEeCHHHHHHHHHHHHHHHcCC
Confidence 357999999999999999999999664
No 16
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.53 E-value=9.7e-15 Score=114.69 Aligned_cols=73 Identities=26% Similarity=0.413 Sum_probs=63.9
Q ss_pred eEEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHh
Q 009566 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRA 444 (532)
Q Consensus 370 ~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~ 444 (532)
.+.+|.||.+++|+|||++|++|++|+++|||+|+|.+..+.. +++.++.|+|+|++++|+.|+.+|.++|.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~--~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL--PGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS--TTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCC--CCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 6789999999999999999999999999999999998653321 246789999999999999999999998765
No 17
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=7.6e-15 Score=122.90 Aligned_cols=73 Identities=19% Similarity=0.314 Sum_probs=64.1
Q ss_pred EEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009566 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (532)
Q Consensus 371 ~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 445 (532)
+.+|+||.+++|+||||+|++||+|+++|||+|+|..+. .| ..+.++++|+|+|++++|++|+.+|.++|.+.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~-~~-~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQL-PP-NGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCC-CT-TCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCcc-CC-CCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 678999999999999999999999999999999997542 22 22456799999999999999999999998764
No 18
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.53 E-value=7.6e-15 Score=114.06 Aligned_cols=70 Identities=24% Similarity=0.460 Sum_probs=63.7
Q ss_pred ceEEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009566 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (532)
Q Consensus 369 ~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 445 (532)
.++.+|+||.+++|+||||+|++|++|+++|||+|+|.+. +..+|.|+|.|++++|.+|+.+|.++|+++
T Consensus 4 ~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~er~v~I~G~~~~v~~A~~~I~~~l~ed 73 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-------NCPERIITLAGPTNAIFKAFAMIIDKLEED 73 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-------CCSEEEEEEEECHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-------CCCcEEEEEEeCHHHHHHHHHHHHHHHhcC
Confidence 5889999999999999999999999999999999999753 245799999999999999999999999863
No 19
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.52 E-value=1.7e-14 Score=135.69 Aligned_cols=141 Identities=16% Similarity=0.188 Sum_probs=99.9
Q ss_pred EEEEEeecCcccccccCCchhHHHHHhhhCCeEEecCCCCCCCCeEEEEecCcchh--hhhhHHHHHHHHhc---c-ccc
Q 009566 285 SLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFE--DTLSATIEAVVRLQ---P-RCS 358 (532)
Q Consensus 285 ~~~v~vp~~~~g~iIGk~G~~Ik~i~~~sga~I~i~~~~~~~~e~vi~i~g~~~~~--~~~~~~~~a~~~~~---~-~~~ 358 (532)
..++.||.+.++.|||++|.+|+.|+++|||+|.++.. +..|+|.+..... ..+..+.+.+..+. + ...
T Consensus 35 i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~-----~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~~~e~g 109 (219)
T 2e3u_A 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE-----TGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERA 109 (219)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT-----TCEEEEEECTTCCSHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred EEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC-----CCEEEEecCCCCCCHHHHHHHHHHHHHHhccCCcccc
Confidence 66899999999999999999999999999999999842 4567787754221 11222222222211 0 000
Q ss_pred ccccccCCCcceEEEEEEe-----------cCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcC
Q 009566 359 EKIERDSGLISFTTRLLVP-----------TSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGD 427 (532)
Q Consensus 359 ~~~~~~~~~~~~~~~i~VP-----------~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G~ 427 (532)
..+-. +......+.++ ...+|+||||+|++|+.|++.|||+|.|. +++|+|.|+
T Consensus 110 ~~ll~---dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~------------~~~v~i~G~ 174 (219)
T 2e3u_A 110 FRLLN---EGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY------------GKTVAIIGN 174 (219)
T ss_dssp GGGGS---TTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE------------TTEEEEEEC
T ss_pred ceecc---CCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC------------CeEEEEEeC
Confidence 01111 11122233333 22689999999999999999999999995 257999999
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 009566 428 LDLAKDALIQVMTRLRAN 445 (532)
Q Consensus 428 ~~~v~~A~~~I~~~l~~~ 445 (532)
+++++.|..+|+++|...
T Consensus 175 ~~~i~~A~~~i~~li~g~ 192 (219)
T 2e3u_A 175 PIQIEIAKTAIEKLARGS 192 (219)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999999999999764
No 20
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.51 E-value=3.5e-14 Score=113.07 Aligned_cols=73 Identities=27% Similarity=0.470 Sum_probs=65.4
Q ss_pred cceEEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009566 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (532)
Q Consensus 368 ~~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 445 (532)
..++.+|.||.+++|+||||+|++|++|+++|||+|+|... .| +++++.|+|+|++++|+.|+.+|.+++.+.
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP--LE---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT--TS---CSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC--CC---CCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 36889999999999999999999999999999999999642 22 467899999999999999999999999874
No 21
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.51 E-value=1.4e-14 Score=113.60 Aligned_cols=72 Identities=29% Similarity=0.521 Sum_probs=65.3
Q ss_pred ceEEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009566 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (532)
Q Consensus 369 ~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 445 (532)
.++.+|.||.+++|+|||++|++|++|+++|||+|+|... .++++++.|+|+|++++|+.|+.+|.++|.++
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-----~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP-----VEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC-----CTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC-----CCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 5789999999999999999999999999999999999752 23567899999999999999999999998764
No 22
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.49 E-value=2.2e-14 Score=114.22 Aligned_cols=72 Identities=29% Similarity=0.496 Sum_probs=64.1
Q ss_pred ceEEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009566 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (532)
Q Consensus 369 ~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 445 (532)
.++.+|.||.+++|+||||+|++|++|+++|||+|+|... . ++++++.|+|+|++++|++|+.+|.++|.+.
T Consensus 5 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~--~---~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 5 QTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP--V---EGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC--C---TTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred cEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC--C---CCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 5789999999999999999999999999999999999753 1 2567899999999999999999999998875
No 23
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.48 E-value=3.3e-14 Score=114.63 Aligned_cols=77 Identities=25% Similarity=0.354 Sum_probs=67.2
Q ss_pred eEEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhcccc
Q 009566 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANLFD 448 (532)
Q Consensus 370 ~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~~~~ 448 (532)
.+.+|.||.+++|+|||++|++|++|+++|||+|+|....+.. ++++++.|+|+|++++|+.|+.+|.++|.+....
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~~ 79 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL--PGTRNRRVTITGSPAATQAAQYLISQRVTYEQGV 79 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBS--TTSCEEEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCC--CCCCceEEEEEcCHHHHHHHHHHHHHHHhccccc
Confidence 5788999999999999999999999999999999997643321 2467899999999999999999999999886543
No 24
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.46 E-value=4.9e-14 Score=113.99 Aligned_cols=74 Identities=27% Similarity=0.444 Sum_probs=66.3
Q ss_pred CcceEEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009566 367 LISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (532)
Q Consensus 367 ~~~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 445 (532)
...++.+|.||.+++|+||||+|++||+|+++|||+|+|... .| +++++.|+|+|++++|++|+.+|.++|.+.
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~--~~---~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP--LE---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC--CS---SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC--CC---CCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 457889999999999999999999999999999999999642 22 467899999999999999999999999874
No 25
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.46 E-value=7.7e-14 Score=113.52 Aligned_cols=74 Identities=19% Similarity=0.328 Sum_probs=66.0
Q ss_pred cceEEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhcc
Q 009566 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (532)
Q Consensus 368 ~~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~~ 446 (532)
..++.+|.||.+++|+||||+|++|++|+++|||+|+|.... + ...++.|+|+|++++|++|+.+|.++|.+..
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~--~---g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~~ 86 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS--G---GLPERSCMLTGTPESVQSAKRLLDQIVEKGR 86 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC--T---TCSEEEEEEEECHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC--C---CCCccEEEEEeCHHHHHHHHHHHHHHHHhcc
Confidence 358899999999999999999999999999999999997532 1 3568999999999999999999999998743
No 26
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.45 E-value=1.5e-13 Score=110.21 Aligned_cols=74 Identities=23% Similarity=0.394 Sum_probs=64.6
Q ss_pred cceEEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHh
Q 009566 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRA 444 (532)
Q Consensus 368 ~~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~ 444 (532)
...+.+|.||.+++|+||||+|++||+|+++|||+|+|......+ ...+|.|+|+|++++++.|+.+|.+++.+
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~---~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN---TNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSS---TTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCC---CCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 357789999999999999999999999999999999997643222 45788999999999999999999998753
No 27
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=1.2e-13 Score=115.07 Aligned_cols=72 Identities=18% Similarity=0.298 Sum_probs=63.7
Q ss_pred eEEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhcc
Q 009566 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (532)
Q Consensus 370 ~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~~ 446 (532)
.+.+|.||.+++|+||||+|++||+|+++|+|+|+|.+++ + ...+|.|+|+|++++|++|+.+|.++|.+..
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~--~---~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~ 82 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--G---TGPEKIAHIMGPPDRCEHAARIINDLLQSLR 82 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC--S---SSSEEEEEEESSHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC--C---CCceeEEEEEeCHHHHHHHHHHHHHHHhccc
Confidence 4678999999999999999999999999999999997532 1 3567899999999999999999999998754
No 28
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=4.9e-14 Score=111.81 Aligned_cols=69 Identities=16% Similarity=0.265 Sum_probs=62.0
Q ss_pred cceEEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHh
Q 009566 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRA 444 (532)
Q Consensus 368 ~~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~ 444 (532)
..++.+|.||.+++|+||||+|++||+|+++|||+|+|+++ ++++.|+|+|++++|+.|+.+|.+++..
T Consensus 8 ~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~--------~~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 8 GQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR--------DKEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS--------SSCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC--------CCCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 35888999999999999999999999999999999999643 2357899999999999999999997664
No 29
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.43 E-value=1.2e-13 Score=107.26 Aligned_cols=71 Identities=28% Similarity=0.573 Sum_probs=64.7
Q ss_pred CceEEEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009566 138 HQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (532)
Q Consensus 138 ~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 215 (532)
..++++|+||.+.+|.||||+|++|++|+++|||+|+|.++ ...+|.|+|+|++++|.+|+.+|.++|.++
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~er~v~I~G~~~~v~~A~~~I~~~l~ed 73 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-------NCPERIITLAGPTNAIFKAFAMIIDKLEED 73 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-------CCSEEEEEEEECHHHHHHHHHHHHHHHHC-
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-------CCCcEEEEEEeCHHHHHHHHHHHHHHHhcC
Confidence 46889999999999999999999999999999999999865 145899999999999999999999999863
No 30
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.42 E-value=1.1e-13 Score=113.16 Aligned_cols=75 Identities=21% Similarity=0.389 Sum_probs=65.9
Q ss_pred cceEEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009566 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (532)
Q Consensus 368 ~~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 445 (532)
..++.+|.||.+++|+||||+|++||+|+++|||+|+|......+ ..++|.|+|+|++++|+.|+.+|.++|.+.
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~---~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 13 GNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN---TGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS---SCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC---CCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 468899999999999999999999999999999999997543211 346899999999999999999999999863
No 31
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.41 E-value=6.8e-13 Score=121.56 Aligned_cols=64 Identities=20% Similarity=0.263 Sum_probs=58.4
Q ss_pred EEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCCCCCcccCCCCceEEEE-----cCHHHHHHHHHHHHHHHhcC
Q 009566 142 AKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQIS-----GEASVVKKALCQIASRLHDN 215 (532)
Q Consensus 142 ~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~-----G~~~~v~~A~~~I~~~l~~~ 215 (532)
.+++||...++.|||+.|++++.|++.++++|.+... ++.|+|. |++.++.+|..+|.++.+.+
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~----------~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf 74 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTE----------NSMVIVEPEAEGIPPVNLMKAAEVVKAISLGF 74 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETT----------TTEEEEEESSTTSCHHHHHHHHHHHHHHHHTC
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcC----------CCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 6899999999999999999999999999999999643 6778888 99999999999999988764
No 32
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.40 E-value=6.2e-13 Score=105.77 Aligned_cols=73 Identities=32% Similarity=0.516 Sum_probs=62.3
Q ss_pred CCCceEEEEEecCCccceEecCCchHHHHHHHHhCCeEEEcCCCCCCCceEEEEEcCCccccccccCcccCCHHHHHHHH
Q 009566 39 GPEDTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFK 118 (532)
Q Consensus 39 ~~~~~~~~i~vp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~ 118 (532)
+...++++|+||.+++|.||||+|++|++|+++|+|+|+|++..++..+|+|+|+|++++ ++.|..+
T Consensus 3 ~g~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~-------------v~~A~~~ 69 (82)
T 1zzk_A 3 MGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQ-------------IQNAQYL 69 (82)
T ss_dssp CCCCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHH-------------HHHHHHH
T ss_pred CCCeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHH-------------HHHHHHH
Confidence 345788999999999999999999999999999999999998877888999999998766 4556656
Q ss_pred HHHHHH
Q 009566 119 VHDRVI 124 (532)
Q Consensus 119 i~~~i~ 124 (532)
|.+.+.
T Consensus 70 I~~~i~ 75 (82)
T 1zzk_A 70 LQNSVK 75 (82)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 33
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.39 E-value=4.6e-13 Score=111.53 Aligned_cols=76 Identities=20% Similarity=0.311 Sum_probs=65.9
Q ss_pred cceEEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhcc
Q 009566 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (532)
Q Consensus 368 ~~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~~ 446 (532)
...+.+|.||.+++|+||||+|++|++|+++|||+|+|..... + ..++++.|+|+|++++|++|+.+|.++|.+..
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~-~--~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESE-G--TLLLSRLIKISGTQKEVAAAKHLILEKVSEDE 88 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSC-C--SSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCC-C--CCCCcceEEEEcCHHHHHHHHHHHHHHHhhCh
Confidence 3578999999999999999999999999999999999975432 1 12357999999999999999999999997654
No 34
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.39 E-value=3e-13 Score=123.90 Aligned_cols=141 Identities=18% Similarity=0.164 Sum_probs=99.8
Q ss_pred EEEEecCCccceEecCCchHHHHHHHHhCCeEEEcCCCCCCCceEEEEEcCCccccccccCcccCCHHHHHHHHHHHHHH
Q 009566 45 YRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124 (532)
Q Consensus 45 ~~i~vp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~~~i~ 124 (532)
++++||...+|.|||++|++++.|+++++++|.|+. .++.|+|+.+..... ...+++|...|.....
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~-----~~~~V~i~t~~~t~d--------p~~i~KA~dlI~ai~r 72 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT-----ENSMVIVEPEAEGIP--------PVNLMKAAEVVKAISL 72 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET-----TTTEEEEEESSTTSC--------HHHHHHHHHHHHHHHH
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc-----CCCeEEEEeCCCCCC--------HHHHHHHHHHHHHHHc
Confidence 689999999999999999999999999999999964 377889984432211 1113344333322111
Q ss_pred ---HhhhcCCCCCCCCCceEEE-EEEe----------CCceeeeeccCchHHHHHHhhhCceEEEecCCCCCcccCCCCc
Q 009566 125 ---AEELRGDEDSDGGHQVTAK-LLVP----------SDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDE 190 (532)
Q Consensus 125 ---~~~~~~~~~~~~~~~~~~~-l~vp----------~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r 190 (532)
.++... ... +.+.+. +.++ ....|+||||+|.+|+.|+..|||+|.|. ++
T Consensus 73 gf~~e~A~~---Ll~-Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~------------~~ 136 (191)
T 1tua_A 73 GFPPEKAFR---LLE-EDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG------------EY 136 (191)
T ss_dssp TCCHHHHGG---GGS-TTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC------------SS
T ss_pred CCCHHHhhh---ccc-CcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc------------CC
Confidence 000000 001 122232 3343 23579999999999999999999999984 34
Q ss_pred eEEEEcCHHHHHHHHHHHHHHHhc
Q 009566 191 LVQISGEASVVKKALCQIASRLHD 214 (532)
Q Consensus 191 ~v~I~G~~~~v~~A~~~I~~~l~~ 214 (532)
.|.|.|+.++++.|...|.+++..
T Consensus 137 ~v~i~G~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 137 EVAIIGDYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred EEEEEeChHHHHHHHHHHHHHHcC
Confidence 799999999999999999999965
No 35
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.38 E-value=4.5e-13 Score=106.64 Aligned_cols=72 Identities=28% Similarity=0.412 Sum_probs=62.7
Q ss_pred CCceEEEEEecCCccceEecCCchHHHHHHHHhCCeEEEcCCCCCCCceEEEEEcCCccccccccCcccCCHHHHHHHHH
Q 009566 40 PEDTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKV 119 (532)
Q Consensus 40 ~~~~~~~i~vp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i 119 (532)
...++++|+||.+++|.||||+|++|++|+++|||+|+|.+..++..+|.|+|+|+++. +..|..+|
T Consensus 3 g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~-------------v~~A~~~I 69 (82)
T 1wvn_A 3 GSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAAS-------------ISLAQYLI 69 (82)
T ss_dssp TTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHH-------------HHHHHHHH
T ss_pred CCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHH-------------HHHHHHHH
Confidence 45788999999999999999999999999999999999998777888999999999766 45666666
Q ss_pred HHHHH
Q 009566 120 HDRVI 124 (532)
Q Consensus 120 ~~~i~ 124 (532)
.+.+.
T Consensus 70 ~~~i~ 74 (82)
T 1wvn_A 70 NARLS 74 (82)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 66553
No 36
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.38 E-value=3.3e-13 Score=105.83 Aligned_cols=71 Identities=28% Similarity=0.427 Sum_probs=62.3
Q ss_pred CceEEEEEecCCccceEecCCchHHHHHHHHhCCeEEEcCCCCCCCceEEEEEcCCccccccccCcccCCHHHHHHHHHH
Q 009566 41 EDTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVH 120 (532)
Q Consensus 41 ~~~~~~i~vp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~ 120 (532)
..++++|+||.+++|.||||+|++|++|+++|||+|+|.+..++..+|+|+|+|++++ +..|..++.
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~-------------v~~A~~~I~ 69 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS-------------ISLAQYLIN 69 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHH-------------HHHHHHHHH
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCHHH-------------HHHHHHHHH
Confidence 4688999999999999999999999999999999999998878889999999999776 456666666
Q ss_pred HHHH
Q 009566 121 DRVI 124 (532)
Q Consensus 121 ~~i~ 124 (532)
+.+.
T Consensus 70 ~~i~ 73 (76)
T 2p2r_A 70 VRLS 73 (76)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6553
No 37
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.38 E-value=6.6e-13 Score=104.13 Aligned_cols=74 Identities=26% Similarity=0.443 Sum_probs=64.4
Q ss_pred ceEEEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009566 139 QVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (532)
Q Consensus 139 ~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 214 (532)
..+++|+||.++++.||||+|++|++|+++|||+|+|.++.+. +.++.++.|+|+|++++|.+|+.+|.+++.+
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~--~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF--LPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCC--STTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCC--CCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 3578999999999999999999999999999999999875332 1236789999999999999999999998864
No 38
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.34 E-value=9.4e-13 Score=106.42 Aligned_cols=72 Identities=33% Similarity=0.580 Sum_probs=62.2
Q ss_pred CCCceEEEEEecCCccceEecCCchHHHHHHHHhCCeEEEcCCCCCCCceEEEEEcCCccccccccCcccCCHHHHHHHH
Q 009566 39 GPEDTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFK 118 (532)
Q Consensus 39 ~~~~~~~~i~vp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~ 118 (532)
....++++|+||.+++|.||||+|++||+|+++|+|+|+|++..+++.+|+|+|+|++++ +++|..+
T Consensus 10 ~~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~-------------v~~A~~~ 76 (89)
T 1j5k_A 10 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQ-------------IQNAQYL 76 (89)
T ss_dssp CCCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHH-------------HHHHHHH
T ss_pred CCCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHH-------------HHHHHHH
Confidence 356788999999999999999999999999999999999998878888999999999766 4556666
Q ss_pred HHHHH
Q 009566 119 VHDRV 123 (532)
Q Consensus 119 i~~~i 123 (532)
|.+.+
T Consensus 77 I~~~i 81 (89)
T 1j5k_A 77 LQNSV 81 (89)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 39
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.34 E-value=2.2e-12 Score=104.91 Aligned_cols=72 Identities=26% Similarity=0.356 Sum_probs=61.7
Q ss_pred CCceEEEEEecCCccceEecCCchHHHHHHHHhCCeEEEcCCCCCCCceEEEEEcCCccccccccCcccCCHHHHHHHHH
Q 009566 40 PEDTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKV 119 (532)
Q Consensus 40 ~~~~~~~i~vp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i 119 (532)
...++++|+||.+++|.||||+|++|++|+++|+|+|+|.+..++..+|+|+|+|++++ +++|..+|
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~-------------v~~A~~~I 78 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPES-------------VQSAKRLL 78 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHH-------------HHHHHHHH
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHH-------------HHHHHHHH
Confidence 45789999999999999999999999999999999999998777788999999999766 45566666
Q ss_pred HHHHH
Q 009566 120 HDRVI 124 (532)
Q Consensus 120 ~~~i~ 124 (532)
.+.+.
T Consensus 79 ~~~i~ 83 (92)
T 1x4n_A 79 DQIVE 83 (92)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 40
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.33 E-value=1.8e-12 Score=105.72 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=64.9
Q ss_pred cceEEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhccc
Q 009566 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANLF 447 (532)
Q Consensus 368 ~~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~~~ 447 (532)
..++.+|.||.++++.|||++|++|++|+++|||+|+|+.+. +.+++.|+|+|++++|+.|+.+|.+++.+...
T Consensus 15 ~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g------~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 15 QMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG------APDPNCVTVTGLPENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp TCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT------CSCTTEEEEESCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC------CCCCcEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999999996432 23467999999999999999999998887543
No 41
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.32 E-value=3.5e-12 Score=102.12 Aligned_cols=75 Identities=21% Similarity=0.475 Sum_probs=65.6
Q ss_pred CCceEEEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009566 137 GHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (532)
Q Consensus 137 ~~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 214 (532)
....+.+|.||.+.++.||||+|++|++|+++|||+|.|..+...+ .+.+|.|+|+|++++|.+|+.+|.+++.+
T Consensus 11 ~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~---~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 11 QNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN---TNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp CSSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSS---TTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCC---CCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 3457789999999999999999999999999999999998753322 36789999999999999999999998854
No 42
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.32 E-value=1.4e-12 Score=106.36 Aligned_cols=71 Identities=17% Similarity=0.271 Sum_probs=63.3
Q ss_pred ceEEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhcc
Q 009566 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (532)
Q Consensus 369 ~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~~ 446 (532)
.++.+|.||.+++|.|||++|++||+|+++|||+|+|++.+ +.++.|+|+|++++|++|+.+|.+++.+..
T Consensus 16 ~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-------~~~~~V~I~G~~e~v~~A~~~I~~i~~~~~ 86 (94)
T 2cte_A 16 QASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-------DPSNQIKITGTKEGIEKARHEVLLISAEQD 86 (94)
T ss_dssp CEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-------SSCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-------CCCCeEEEEECHHHHHHHHHHHHHHhhccc
Confidence 58899999999999999999999999999999999996421 235799999999999999999999988753
No 43
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.32 E-value=1.1e-12 Score=101.08 Aligned_cols=67 Identities=22% Similarity=0.320 Sum_probs=59.4
Q ss_pred ceEEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHH
Q 009566 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRL 442 (532)
Q Consensus 369 ~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l 442 (532)
..+.+|.||.+++|.|||++|++|++|+++|||+|+|+... +.++.|+|+|+++++++|+.+|.+++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-------~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-------EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-------SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-------CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999996532 35689999999999999999998753
No 44
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.31 E-value=3e-12 Score=104.90 Aligned_cols=73 Identities=21% Similarity=0.292 Sum_probs=64.2
Q ss_pred ceEEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009566 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (532)
Q Consensus 369 ~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 445 (532)
.++..|.||.++|+.|||++|++|++|+++|||+|+|+.... | ...++.|+|+|+++++..|+.+|..++.+.
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~-~---~~~~~~V~I~G~~e~v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD-G---NQPQDQITITGYEKNTEAARDAILRIVGEL 88 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT-C---SSCSSEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC-C---CCCccEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999975432 2 235789999999999999999999988754
No 45
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.31 E-value=1.6e-12 Score=104.69 Aligned_cols=74 Identities=26% Similarity=0.441 Sum_probs=65.3
Q ss_pred eEEEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009566 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (532)
Q Consensus 140 ~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 215 (532)
++++|+||..++|.|||++|.+|++|+++|||+|.|.++.+. +.++.++.|+|+|++++|.+|+.+|.+++.+.
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~--~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF--LPGTRNRRVTITGSPAATQAAQYLISQRVTYE 76 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCB--STTSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCC--CCCCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 478999999999999999999999999999999999875332 12367899999999999999999999999773
No 46
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.29 E-value=2.2e-12 Score=105.35 Aligned_cols=77 Identities=22% Similarity=0.502 Sum_probs=67.8
Q ss_pred CCCceEEEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009566 136 GGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (532)
Q Consensus 136 ~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 215 (532)
....++.+|+||..+++.||||+|++|++|+++|||+|+|.++.... ...+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 11 ~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~---~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 11 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN---TGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS---SCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC---CCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 45678999999999999999999999999999999999998653221 246899999999999999999999999773
No 47
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=1.3e-12 Score=103.53 Aligned_cols=71 Identities=23% Similarity=0.346 Sum_probs=64.1
Q ss_pred CCCceEEEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009566 136 GGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (532)
Q Consensus 136 ~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 214 (532)
....++++|.||.+++++||||+|++||+|+++|||+|+|++. ..++.|+|+|++++|++|+.+|.+++..
T Consensus 6 ~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~--------~~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 6 SGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR--------DKEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp SCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS--------SSCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC--------CCCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 4567889999999999999999999999999999999999764 2368899999999999999999998765
No 48
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.27 E-value=4.7e-12 Score=105.36 Aligned_cols=71 Identities=23% Similarity=0.453 Sum_probs=63.4
Q ss_pred eEEEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009566 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (532)
Q Consensus 140 ~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 215 (532)
.+++|+||.++++.||||+|++|++|+++|+|+|+|.++.. .+.+|.|+|+|++++|++|+.+|.+++.+.
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~-----~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG-----TGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCS-----SSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCC-----CCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 36899999999999999999999999999999999976432 246899999999999999999999999773
No 49
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.27 E-value=4.3e-12 Score=106.07 Aligned_cols=73 Identities=26% Similarity=0.419 Sum_probs=64.1
Q ss_pred EEEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009566 141 TAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (532)
Q Consensus 141 ~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 215 (532)
+++|+||.++++.||||+|++|++|+++|||+|+|..+.. + .....++.|+|+|+.++|.+|+.+|.+++.+.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~-~-~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLP-P-NGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCC-T-TCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccC-C-CCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 6899999999999999999999999999999999976532 1 12346799999999999999999999999874
No 50
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.24 E-value=1.6e-11 Score=102.18 Aligned_cols=79 Identities=28% Similarity=0.445 Sum_probs=68.0
Q ss_pred CCCceEEEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009566 136 GGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (532)
Q Consensus 136 ~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 215 (532)
....++++|+||..+++.||||+|.+|++|+++|||+|+|.+..... ...++.|+|+|+.++|.+|+.+|.+++.+.
T Consensus 11 ~~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~---~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 11 ENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGT---LLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp SSCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS---SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCC---CCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 44668899999999999999999999999999999999998643211 235899999999999999999999999875
Q ss_pred CC
Q 009566 216 PS 217 (532)
Q Consensus 216 ~~ 217 (532)
+.
T Consensus 88 ~~ 89 (104)
T 1we8_A 88 EE 89 (104)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 51
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.24 E-value=7.6e-12 Score=103.85 Aligned_cols=71 Identities=23% Similarity=0.261 Sum_probs=62.7
Q ss_pred ceEEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhcc
Q 009566 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (532)
Q Consensus 369 ~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~~ 446 (532)
..+.+|.||.+++|.|||++|++|++|+++|||+|+|+... ...+.|+|+|++++|+.|+.+|.+++.+..
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g-------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-------LQSDIIAITGLAANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT-------TTCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC-------CCcceEEEEcCHHHHHHHHHHHHHHHhhHH
Confidence 57889999999999999999999999999999999996532 234699999999999999999999887653
No 52
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.21 E-value=1.4e-11 Score=100.39 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=65.7
Q ss_pred CCCCceEEEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009566 135 DGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (532)
Q Consensus 135 ~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 214 (532)
+....++..|.||..+++.|||++|.+|++|+++|||+|+|+.+.+ ..++.|+|+|..++|++|+.+|.+++.+
T Consensus 12 ~l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~------~~~~~V~I~G~~e~v~~A~~~I~~i~~e 85 (95)
T 2ctm_A 12 ELEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA------PDPNCVTVTGLPENVEEAIDHILNLEEE 85 (95)
T ss_dssp CTTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC------SCTTEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred hhcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC------CCCcEEEEEcCHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999999999999976422 2467899999999999999999999876
No 53
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.20 E-value=1.2e-11 Score=95.21 Aligned_cols=68 Identities=19% Similarity=0.301 Sum_probs=60.6
Q ss_pred CceEEEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHH
Q 009566 138 HQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRL 212 (532)
Q Consensus 138 ~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l 212 (532)
...+..|.||..+++.|||++|.+|++|+++|||+|+|+++. ..++.|+|+|+.++|.+|+.+|.+++
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-------~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-------EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-------SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-------CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999999997642 24679999999999999999998764
No 54
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.18 E-value=1.9e-11 Score=99.67 Aligned_cols=73 Identities=22% Similarity=0.372 Sum_probs=65.2
Q ss_pred CCCceEEEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 009566 136 GGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (532)
Q Consensus 136 ~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 215 (532)
....++.+|.||...++.|||++|.+|++|+++|||+|+|++.+ ..++.|+|+|+.++|.+|+.+|.+++.+.
T Consensus 13 l~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-------~~~~~V~I~G~~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 13 LQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-------DPSNQIKITGTKEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CCSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-------SSCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred hCCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-------CCCCeEEEEECHHHHHHHHHHHHHHhhcc
Confidence 45678999999999999999999999999999999999997542 23578999999999999999999999773
No 55
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.17 E-value=3.7e-11 Score=98.39 Aligned_cols=73 Identities=16% Similarity=0.248 Sum_probs=64.2
Q ss_pred CceEEEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009566 138 HQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (532)
Q Consensus 138 ~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 214 (532)
...++.|.||..+++.|||++|.+|++|+++|||+|+|+++.+ + ...++.|+|+|+.++|.+|+.+|..++.+
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~-~---~~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD-G---NQPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT-C---SSCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC-C---CCCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999999999986532 2 13578999999999999999999998866
No 56
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.12 E-value=5e-11 Score=96.98 Aligned_cols=72 Identities=17% Similarity=0.190 Sum_probs=63.6
Q ss_pred cceEEEEEEecCcceeEecCCChhHHHHHHhh-CceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhcc
Q 009566 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLT-KANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (532)
Q Consensus 368 ~~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~T-ga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~~ 446 (532)
..++..|.||.++|+.|||++|.+|++|+++| ||+|+|+.. ++..+.|+|.|+.++|++|+.+|.+++.+..
T Consensus 15 ~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~-------g~~~~~V~I~G~~~~v~~A~~~I~~iv~e~e 87 (95)
T 2ctj_A 15 NIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE-------GSGSDTVVIRGPSSDVEKAKKQLLHLAEEKQ 87 (95)
T ss_dssp SSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT-------TTTCCEEEEESCHHHHHHHHHHHHHHHHHHS
T ss_pred hcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC-------CCCcceEEEEcCHHHHHHHHHHHHHHHhhhh
Confidence 36789999999999999999999999999999 999999642 2345689999999999999999999988643
No 57
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.06 E-value=2.5e-10 Score=94.13 Aligned_cols=68 Identities=15% Similarity=0.222 Sum_probs=60.3
Q ss_pred ceEEEEEEecCcceeEecCCChhHHHHHHh-hCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhcc
Q 009566 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRL-TKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (532)
Q Consensus 369 ~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~-Tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~~ 446 (532)
.++.+|.||.++|++|||++|++|++|+++ ++++|+++. +++.|+|+|+++.|.+|+.+|..++++..
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~----------~~~~ItI~G~~~~V~~a~~~I~~~v~el~ 94 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE----------GEDKITLEGPTEDVSVAQEQIEGMVKDLI 94 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS----------SSCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC----------CCCEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999997 589998853 34689999999999999999999887643
No 58
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.04 E-value=1.4e-10 Score=96.13 Aligned_cols=69 Identities=25% Similarity=0.384 Sum_probs=62.1
Q ss_pred ceEEEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009566 139 QVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (532)
Q Consensus 139 ~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 214 (532)
.++..|.||..+++.|||++|.+|++|+++|||+|+|+++. ...+.|+|+|+.++|.+|+.+|..++.+
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g-------~~~~~V~I~G~~e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-------LQSDIIAITGLAANLDRAKAGLLERVKE 84 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT-------TTCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC-------CCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 47899999999999999999999999999999999997642 2345899999999999999999999876
No 59
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.01 E-value=2.3e-10 Score=92.99 Aligned_cols=73 Identities=23% Similarity=0.359 Sum_probs=65.4
Q ss_pred CCCCceEEEEEEeCCceeeeeccCchHHHHHHhhh-CceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHh
Q 009566 135 DGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSET-GAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLH 213 (532)
Q Consensus 135 ~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~t-ga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~ 213 (532)
+..+.++..|.||..+++.|||++|.+|++|+++| ||+|+|+.+. +..+.|+|.|+.++|++|+.+|.+++.
T Consensus 12 e~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g-------~~~~~V~I~G~~~~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 12 DLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEG-------SGSDTVVIRGPSSDVEKAKKQLLHLAE 84 (95)
T ss_dssp CCCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTT-------TTCCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred HHhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCC-------CCcceEEEEcCHHHHHHHHHHHHHHHh
Confidence 45677889999999999999999999999999999 9999997542 345689999999999999999999997
Q ss_pred c
Q 009566 214 D 214 (532)
Q Consensus 214 ~ 214 (532)
+
T Consensus 85 e 85 (95)
T 2ctj_A 85 E 85 (95)
T ss_dssp H
T ss_pred h
Confidence 6
No 60
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.98 E-value=5.8e-10 Score=91.99 Aligned_cols=66 Identities=23% Similarity=0.304 Sum_probs=60.0
Q ss_pred ceEEEEEEeCCceeeeeccCchHHHHHHhh-hCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009566 139 QVTAKLLVPSDQIGCVIGKGGQIVQNIRSE-TGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (532)
Q Consensus 139 ~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~-tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 214 (532)
.++..|.||..+|++|||++|++|++|+++ ++++|.|+.+ ++.|+|+|+++.|.+|+.+|..++.+
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~~----------~~~ItI~G~~~~V~~a~~~I~~~v~e 92 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEG----------EDKITLEGPTEDVSVAQEQIEGMVKD 92 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECSS----------SCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCCC----------CCEEEEECCHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999997 5999998652 56899999999999999999999876
No 61
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.90 E-value=7.9e-10 Score=88.14 Aligned_cols=64 Identities=25% Similarity=0.308 Sum_probs=56.7
Q ss_pred cceEEEEEEecCcceeEecCCChhHHHHHHhhCce-EEEecCCCCCCCCCCCCceEEEEc-CHHHHHHHHHHHHHH
Q 009566 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKAN-IRILPKENLPKIASEDDEMVQISG-DLDLAKDALIQVMTR 441 (532)
Q Consensus 368 ~~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~-I~i~~~~~~P~~~~~~~r~V~I~G-~~~~v~~A~~~I~~~ 441 (532)
..+..+|.||.+++|.|||++|.+|++|+++|||+ |.|.. ++.+|+|.| +.+++++|+.+|...
T Consensus 13 ~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e----------ddG~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 13 AAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE----------DTGTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET----------TTTEEEEEESSHHHHHHHHHHHSCC
T ss_pred CceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc----------CCCEEEEEECCHHHHHHHHHHHHhh
Confidence 35888999999999999999999999999999998 99942 347999999 899999999888543
No 62
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.70 E-value=3.8e-08 Score=82.93 Aligned_cols=78 Identities=17% Similarity=0.054 Sum_probs=60.2
Q ss_pred cceEEEEEEecC-------cceeEecCCChhHHHHHHhhCceEEEecCCCC---C--CCCCCCCceEEEEc-CHHHHHHH
Q 009566 368 ISFTTRLLVPTS-------RIGCLIGKGGSIITEMRRLTKANIRILPKENL---P--KIASEDDEMVQISG-DLDLAKDA 434 (532)
Q Consensus 368 ~~~~~~i~VP~~-------~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~---P--~~~~~~~r~V~I~G-~~~~v~~A 434 (532)
..++.+|.||.+ ++|.|||++|.+||+|+++|||+|.|..++.. + .....++-.|.|.+ +++++++|
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A 89 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAA 89 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHH
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHH
Confidence 357778888865 77999999999999999999999999754311 0 00112344688887 69999999
Q ss_pred HHHHHHHHHhc
Q 009566 435 LIQVMTRLRAN 445 (532)
Q Consensus 435 ~~~I~~~l~~~ 445 (532)
+.+|.++|...
T Consensus 90 ~~~Ie~Ll~~v 100 (119)
T 2yqr_A 90 KKLCENLLQTV 100 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhch
Confidence 99999998854
No 63
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.69 E-value=3.6e-08 Score=84.86 Aligned_cols=76 Identities=18% Similarity=0.346 Sum_probs=62.3
Q ss_pred ceEEEEEEecC------cceeEecCCChhHHHHHHhhCceEEEecCCCCC-----------CCCCCCCceEEEEc-CHHH
Q 009566 369 SFTTRLLVPTS------RIGCLIGKGGSIITEMRRLTKANIRILPKENLP-----------KIASEDDEMVQISG-DLDL 430 (532)
Q Consensus 369 ~~~~~i~VP~~------~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P-----------~~~~~~~r~V~I~G-~~~~ 430 (532)
.++.+|.||.+ ++|.|||++|.+||+|+++|||+|.|..+.... .....++-.|.|++ +.+.
T Consensus 6 k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~ 85 (131)
T 1k1g_A 6 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMEN 85 (131)
T ss_dssp CEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHH
T ss_pred eEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHH
Confidence 57889999988 889999999999999999999999998753211 10122356799999 6899
Q ss_pred HHHHHHHHHHHHHh
Q 009566 431 AKDALIQVMTRLRA 444 (532)
Q Consensus 431 v~~A~~~I~~~l~~ 444 (532)
+++|+.+|..+|..
T Consensus 86 ~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 86 VKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999976
No 64
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.61 E-value=2.7e-08 Score=79.24 Aligned_cols=67 Identities=27% Similarity=0.316 Sum_probs=57.9
Q ss_pred CCCceEEEEEEeCCceeeeeccCchHHHHHHhhhCce-EEEecCCCCCcccCCCCceEEEEc-CHHHHHHHHHHHHHHH
Q 009566 136 GGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQ-IRILKDEHLPSCALRSDELVQISG-EASVVKKALCQIASRL 212 (532)
Q Consensus 136 ~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~-I~i~~~~~~p~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~l 212 (532)
....+...|.||...++.|||++|.+|++|+++|||+ |.|..+ +..|+|.| +.+++++|+.+|..+.
T Consensus 11 ~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~ed----------dG~V~I~g~~~ea~~~A~~~I~~ie 79 (91)
T 2cpq_A 11 LAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDED----------TGTFRIYGESADAVKKARGFLEFVE 79 (91)
T ss_dssp SSCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETT----------TTEEEEEESSHHHHHHHHHHHSCCC
T ss_pred ccCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcC----------CCEEEEEECCHHHHHHHHHHHHhhh
Confidence 3456789999999999999999999999999999998 999532 57899999 7999999988776533
No 65
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.32 E-value=1.2e-06 Score=75.22 Aligned_cols=77 Identities=27% Similarity=0.374 Sum_probs=60.8
Q ss_pred CceEEEEEEeCC------ceeeeeccCchHHHHHHhhhCceEEEecCCCCCc-----------ccCCCCceEEEEc-CHH
Q 009566 138 HQVTAKLLVPSD------QIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPS-----------CALRSDELVQISG-EAS 199 (532)
Q Consensus 138 ~~~~~~l~vp~~------~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~-----------~~~~~~r~v~I~G-~~~ 199 (532)
..++.+|.||.. .++.|||++|.+||+|+++|||+|.|........ .....+-.|.|++ +.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 457889999988 6789999999999999999999999976321110 0012355788888 478
Q ss_pred HHHHHHHHHHHHHhc
Q 009566 200 VVKKALCQIASRLHD 214 (532)
Q Consensus 200 ~v~~A~~~I~~~l~~ 214 (532)
.+.+|+.+|..+|.+
T Consensus 85 ~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 899999999999976
No 66
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.28 E-value=2.8e-07 Score=79.59 Aligned_cols=75 Identities=23% Similarity=0.315 Sum_probs=56.2
Q ss_pred eEEEEEEec------CcceeEecCCChhHHHHHHhhCceEEEecCCCC------------CCCC-CCCCceEEEEcC-HH
Q 009566 370 FTTRLLVPT------SRIGCLIGKGGSIITEMRRLTKANIRILPKENL------------PKIA-SEDDEMVQISGD-LD 429 (532)
Q Consensus 370 ~~~~i~VP~------~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~------------P~~~-~~~~r~V~I~G~-~~ 429 (532)
++.+|.||. +++|.|||++|.++|+|+++|||+|.|..+... |..+ .+++-.|.|++. ++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 567788884 459999999999999999999999999876521 0000 122236889993 43
Q ss_pred -----HHHHHHHHHHHHHHh
Q 009566 430 -----LAKDALIQVMTRLRA 444 (532)
Q Consensus 430 -----~v~~A~~~I~~~l~~ 444 (532)
.+++|+.+|..+|..
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVP 101 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHHHHHHCCC
Confidence 789999999888863
No 67
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.16 E-value=4.4e-06 Score=70.26 Aligned_cols=77 Identities=23% Similarity=0.171 Sum_probs=57.4
Q ss_pred CceEEEEEEeCC-------ceeeeeccCchHHHHHHhhhCceEEEecCCCC-----CcccCCCCceEEEEc-CHHHHHHH
Q 009566 138 HQVTAKLLVPSD-------QIGCVIGKGGQIVQNIRSETGAQIRILKDEHL-----PSCALRSDELVQISG-EASVVKKA 204 (532)
Q Consensus 138 ~~~~~~l~vp~~-------~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~-----p~~~~~~~r~v~I~G-~~~~v~~A 204 (532)
..++.+|.||-. .++.|||++|.+||+|+++|||+|.|..+... .......+-.|.|.+ +.+++.+|
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A 89 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAA 89 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHH
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHH
Confidence 456778888865 57899999999999999999999999643210 000011234677775 58999999
Q ss_pred HHHHHHHHhc
Q 009566 205 LCQIASRLHD 214 (532)
Q Consensus 205 ~~~I~~~l~~ 214 (532)
+.+|.+++.+
T Consensus 90 ~~~Ie~Ll~~ 99 (119)
T 2yqr_A 90 KKLCENLLQT 99 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999999876
No 68
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.01 E-value=6e-06 Score=89.16 Aligned_cols=95 Identities=17% Similarity=0.191 Sum_probs=72.7
Q ss_pred ccCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCceEEEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCCCCCcccC
Q 009566 107 KFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCAL 186 (532)
Q Consensus 107 ~~v~~a~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~ 186 (532)
+.+..|.+++..|++.+.+..................|.||...++.|||++|.+||.|+++|||+|.|..
T Consensus 534 ~aL~~A~~g~~~I~~~m~~al~~~~~~~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d--------- 604 (630)
T 3u1k_A 534 EAIQQASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD--------- 604 (630)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSCCSSCCTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC---------
Confidence 45677888888888776544333222233445567889999999999999999999999999999999953
Q ss_pred CCCceEEEEcC-HHHHHHHHHHHHHHH
Q 009566 187 RSDELVQISGE-ASVVKKALCQIASRL 212 (532)
Q Consensus 187 ~~~r~v~I~G~-~~~v~~A~~~I~~~l 212 (532)
+..|.|.+. .+++.+|+.+|..++
T Consensus 605 --~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 605 --EETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp --SSEEEEEESSHHHHHHHHHHTTC--
T ss_pred --CcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 467999987 678999998887654
No 69
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.92 E-value=9.7e-06 Score=69.96 Aligned_cols=76 Identities=25% Similarity=0.401 Sum_probs=55.9
Q ss_pred eEEEEEEeCCc------eeeeeccCchHHHHHHhhhCceEEEecCCCCC------------ccc-CCCCceEEEEcCH-H
Q 009566 140 VTAKLLVPSDQ------IGCVIGKGGQIVQNIRSETGAQIRILKDEHLP------------SCA-LRSDELVQISGEA-S 199 (532)
Q Consensus 140 ~~~~l~vp~~~------~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p------------~~~-~~~~r~v~I~G~~-~ 199 (532)
++.+|.||.+. +|.|||++|.++|+|+++|||+|.|..+.... ... ...+--|.|++.. +
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 56788888654 89999999999999999999999998643211 000 0122367888843 2
Q ss_pred -----HHHHHHHHHHHHHhcC
Q 009566 200 -----VVKKALCQIASRLHDN 215 (532)
Q Consensus 200 -----~v~~A~~~I~~~l~~~ 215 (532)
.+.+|+.+|..+|...
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p~ 102 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVPA 102 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHHHHHHHHHCCCC
Confidence 7899999999988653
No 70
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.89 E-value=5.1e-06 Score=89.69 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=54.6
Q ss_pred ceEEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcC-HHHHHHHHHHHHHHH
Q 009566 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGD-LDLAKDALIQVMTRL 442 (532)
Q Consensus 369 ~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G~-~~~v~~A~~~I~~~l 442 (532)
.....|.||.+.++.|||+||.+||+|+++|||+|.|. ++.+|.|.++ .+++++|+.+|.+.+
T Consensus 566 p~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~-----------d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 566 PVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV-----------DEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp CEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC-----------SSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred CeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc-----------CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 56788999999999999999999999999999999994 3468999995 789999999986654
No 71
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.82 E-value=3.5e-05 Score=65.05 Aligned_cols=68 Identities=18% Similarity=0.179 Sum_probs=58.9
Q ss_pred EEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009566 372 TRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (532)
Q Consensus 372 ~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 445 (532)
..|.|...+++.|||++|+.|++|+..|.+.|+|..-+ .+..-.|+|.|++..-..|+.+|..+..-.
T Consensus 58 lVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~------s~g~tEVtIfG~~~~Q~rak~MI~sLA~~h 125 (140)
T 3v69_A 58 KRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWG------PERRAEIWIFGPPPFRRDVDRMLTDLAHYC 125 (140)
T ss_dssp EEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCC------TTSCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccC------CCCcEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999997532 235677999999999999999998876643
No 72
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.44 E-value=7.2e-05 Score=64.97 Aligned_cols=103 Identities=21% Similarity=0.296 Sum_probs=72.9
Q ss_pred EEEEEeecCcccccccCCchhHHHHHhhhCCeEEecCCCCCCCCeEEEEecCcchhhhhhHHHHHHHHhccccccccccc
Q 009566 285 SLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERD 364 (532)
Q Consensus 285 ~~~v~vp~~~~g~iIGk~G~~Ik~i~~~sga~I~i~~~~~~~~e~vi~i~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 364 (532)
...|.|+...+|..||++|++|+.|+++.|-+|.+-.-+.+ . ..-+..++ .|.-...+.-.
T Consensus 37 r~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~d-------------~----~~fI~naL--sPA~V~~V~i~ 97 (144)
T 2cxc_A 37 RLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSSD-------------L----ERIVKNLF--PGVKIESINVR 97 (144)
T ss_dssp EEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCSS-------------H----HHHHHHHS--TTSCEEEEEEE
T ss_pred EEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCCC-------------H----HHHHHHhc--CCceEEEEEEe
Confidence 67899999999999999999999999999988877653321 0 00111111 11111111111
Q ss_pred CCCcceEEEEEEecCcceeEecCCChhHHHHHHhhCceEEEe
Q 009566 365 SGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRIL 406 (532)
Q Consensus 365 ~~~~~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~ 406 (532)
..+......+.||.+..+..|||+|.+++-..+.||.+|.|.
T Consensus 98 ~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 98 ERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp EETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred ecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 001245678999999999999999999999999999998874
No 73
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.39 E-value=6e-05 Score=82.29 Aligned_cols=97 Identities=23% Similarity=0.328 Sum_probs=29.7
Q ss_pred ccCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCceEEEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCCCCCcccC
Q 009566 107 KFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCAL 186 (532)
Q Consensus 107 ~~v~~a~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~ 186 (532)
+.+..|.+++..|++.+.+..................|.||...++.|||++|.+||.|.++|||+|.|..
T Consensus 537 ~aL~~A~~g~~~I~~~m~~al~~~r~~~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d--------- 607 (726)
T 4aid_A 537 QALAQAKEGRAHILGEMNKAMDAPRADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND--------- 607 (726)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCSSCCSSCCC----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC---------
Confidence 45777888888888766543322222222333456788999999999999999999999999999999853
Q ss_pred CCCceEEEEcC-HHHHHHHHHHHHHHHhc
Q 009566 187 RSDELVQISGE-ASVVKKALCQIASRLHD 214 (532)
Q Consensus 187 ~~~r~v~I~G~-~~~v~~A~~~I~~~l~~ 214 (532)
+..|.|.+. .+++++|+..|..++.+
T Consensus 608 --dG~v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 608 --DGVVKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp --------CCSCHHHHHHHHHC-------
T ss_pred --CceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 446777775 78899999999888754
No 74
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.31 E-value=0.00016 Score=62.69 Aligned_cols=104 Identities=23% Similarity=0.296 Sum_probs=70.9
Q ss_pred eEEEEEecCCccceEecCCchHHHHHHHHhCCeEEEcCCCCCCCceEEEEEcCCccccccccCcccCCHHHHHHHHHHHH
Q 009566 43 TVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDR 122 (532)
Q Consensus 43 ~~~~i~vp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~~~ 122 (532)
=.+.++|+...+|..||++|++|+.|+++.|-+|.|-+- +..++. .+...
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~-----------s~d~~~-------------------fI~na 85 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEY-----------SSDLER-------------------IVKNL 85 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEEC-----------CSSHHH-------------------HHHHH
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEc-----------CCCHHH-------------------HHHHh
Confidence 346889999999999999999999999999999875321 111111 01110
Q ss_pred HHHhhhcCCCCCCCCCceEEEEEEeCCceeeeeccCchHHHHHHhhhCceEEEe
Q 009566 123 VIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRIL 176 (532)
Q Consensus 123 i~~~~~~~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~ 176 (532)
+.-..+..-.-...+....+.+.||..+.+..|||+|.+++-...-||.+|.|.
T Consensus 86 LsPA~V~~V~i~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 86 FPGVKIESINVRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp STTSCEEEEEEEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred cCCceEEEEEEeecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 100000000000002345688999999999999999999999999999998774
No 75
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.29 E-value=6.3e-05 Score=82.13 Aligned_cols=66 Identities=29% Similarity=0.376 Sum_probs=12.5
Q ss_pred ceEEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEc-CHHHHHHHHHHHHHHHHhc
Q 009566 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISG-DLDLAKDALIQVMTRLRAN 445 (532)
Q Consensus 369 ~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G-~~~~v~~A~~~I~~~l~~~ 445 (532)
+....|.||.+.++.|||+||.+||+|+++||++|.|. ++..|.|.+ +.+++++|+.+|...+.+.
T Consensus 569 p~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~-----------ddG~v~I~~~~~~~~~~A~~~i~~i~~~~ 635 (726)
T 4aid_A 569 PKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN-----------DDGVVKVSASDGAKIKAAIDWIKSITDEA 635 (726)
T ss_dssp CC------------------------------------------------------CCSCHHHHHHHHHC--------
T ss_pred CeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE-----------CCceEEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 45678999999999999999999999999999999984 245788888 5899999999998887654
No 76
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=96.99 E-value=0.0014 Score=55.38 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=58.5
Q ss_pred EEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 009566 142 AKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (532)
Q Consensus 142 ~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 214 (532)
+.|.|.+.+++.|+|++|+.|+.|+..|++.|++..-+. +..-.|+|.|++..-.+|+.+|..+..-
T Consensus 58 lVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s------~g~tEVtIfG~~~~Q~rak~MI~sLA~~ 124 (140)
T 3v69_A 58 KRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP------ERRAEIWIFGPPPFRRDVDRMLTDLAHY 124 (140)
T ss_dssp EEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT------TSCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC------CCcEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999999999999999976421 2456799999999999999999887754
No 77
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=95.88 E-value=0.0079 Score=56.74 Aligned_cols=96 Identities=22% Similarity=0.278 Sum_probs=64.1
Q ss_pred CcccccccCCchhHHHHH-hhhCCeEEecCCCCCCCCeEEEEecCcchhhhhhHHHHHHHHhccccccccc-ccCCCcce
Q 009566 293 ANIGGVIGKGGAIINQIR-QESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIE-RDSGLISF 370 (532)
Q Consensus 293 ~~~g~iIGk~G~~Ik~i~-~~sga~I~i~~~~~~~~e~vi~i~g~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 370 (532)
+-+|+.||++|++|+.|. +..|-+|.|-.-+.+ . ..-+..++ .|.-...+. .+.. ..
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d-------------p----~~fi~nal--sPA~V~~V~i~~~~--~~ 184 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD-------------P----ARFVANAL--SPAKVVSVSVIDQT--AR 184 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS-------------H----HHHHHHHT--TTSCCSEEEEEETT--TT
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecCC-------------H----HHHHHhcc--CCcceEEEEEEcCC--Cc
Confidence 458999999999999994 555777766543221 0 00111111 111111111 0111 24
Q ss_pred EEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCC
Q 009566 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKE 409 (532)
Q Consensus 371 ~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~ 409 (532)
...+.||.++.+.-|||+|.+|+--.+.||.+|.|....
T Consensus 185 ~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 223 (251)
T 2asb_A 185 AARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 223 (251)
T ss_dssp EEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESS
T ss_pred EEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHH
Confidence 678999999999999999999999999999999997654
No 78
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=95.67 E-value=0.016 Score=54.71 Aligned_cols=98 Identities=23% Similarity=0.224 Sum_probs=62.9
Q ss_pred CccceEecCCchHHHHH-HHHhCCeEEEcCCCCCCCceEEEEEcCCccccccccCcccCCHHHHHHHHHHHHHHHhhhcC
Q 009566 52 RKIGSIIGRGGEIVKQL-RIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELRG 130 (532)
Q Consensus 52 ~~~g~IIGk~G~~Ik~i-~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~~~i~~~~~~~ 130 (532)
+-+|..||++|++|+.| ++..|-+|.|-.- +-.++. .+...+.-.....
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~-----------s~dp~~-------------------fi~nalsPA~V~~ 175 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDY-----------DDDPAR-------------------FVANALSPAKVVS 175 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEEC-----------CSSHHH-------------------HHHHHTTTSCCSE
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEe-----------cCCHHH-------------------HHHhccCCcceEE
Confidence 45899999999999999 5556777775221 111110 1111111000000
Q ss_pred CCCCCCCCceEEEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCCC
Q 009566 131 DEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180 (532)
Q Consensus 131 ~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~ 180 (532)
- .........+.+.||..+.+..|||+|.|++-....||.+|.|....+
T Consensus 176 V-~i~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 224 (251)
T 2asb_A 176 V-SVIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 224 (251)
T ss_dssp E-EEEETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESSC
T ss_pred E-EEEcCCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHHH
Confidence 0 000011236889999999999999999999999999999999977543
No 79
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.55 E-value=0.012 Score=58.67 Aligned_cols=96 Identities=22% Similarity=0.274 Sum_probs=65.8
Q ss_pred CcccccccCCchhHHHHHhhh-CCeEEecCCCCCCCCeEEEEecCcchhhhhhHHHHHHHHhcccccccc-cccCCCcce
Q 009566 293 ANIGGVIGKGGAIINQIRQES-GAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKI-ERDSGLISF 370 (532)
Q Consensus 293 ~~~g~iIGk~G~~Ik~i~~~s-ga~I~i~~~~~~~~e~vi~i~g~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 370 (532)
+-+|..||++|++|+.|.++. |=+|.|-.-+.+ . ..-+..++ .|.-...+ .-+. ...
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d-------------p----~~fi~nal--sPA~V~~V~~~~~--~~~ 307 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD-------------P----ARFVANAL--SPAKVVSVSVIDQ--TAR 307 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS-------------H----HHHHHHHT--TTSCCSEEEEEET--TTT
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcCCC-------------H----HHHHHHhc--CCcceeEEEEEcC--CCc
Confidence 468999999999999999999 777766542211 0 00111111 11111111 0011 135
Q ss_pred EEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCC
Q 009566 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKE 409 (532)
Q Consensus 371 ~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~ 409 (532)
...+.||.+..+..|||+|.+++-..+.||.+|.|....
T Consensus 308 ~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 346 (366)
T 1k0r_A 308 AARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 346 (366)
T ss_dssp EEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESS
T ss_pred EEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHH
Confidence 688999999999999999999999999999999997643
No 80
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.27 E-value=0.008 Score=59.98 Aligned_cols=97 Identities=25% Similarity=0.249 Sum_probs=64.3
Q ss_pred CccceEecCCchHHHHHHHHh-CCeEEEcCCCCCCCceEEEEEcCCccccccccCcccCCHHHHHHHHHHHHHHHhhhcC
Q 009566 52 RKIGSIIGRGGEIVKQLRIDT-KSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELRG 130 (532)
Q Consensus 52 ~~~g~IIGk~G~~Ik~i~~~t-ga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~~~i~~~~~~~ 130 (532)
+-+|..||++|++|+.|.++. |=+|.|-+- +.+- ...+...+.-..+..
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~-------------s~dp-----------------~~fi~nalsPA~V~~ 298 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDY-------------DDDP-----------------ARFVANALSPAKVVS 298 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEEC-------------CSSH-----------------HHHHHHHTTTSCCSE
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEc-------------CCCH-----------------HHHHHHhcCCcceeE
Confidence 568999999999999999998 777775221 1110 001111111000000
Q ss_pred CCCCCCCCceEEEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCC
Q 009566 131 DEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDE 179 (532)
Q Consensus 131 ~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~ 179 (532)
- ..-......+.+.||..+.+..|||+|.+++-....||.+|.|..+.
T Consensus 299 V-~~~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 346 (366)
T 1k0r_A 299 V-SVIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 346 (366)
T ss_dssp E-EEEETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESS
T ss_pred E-EEEcCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHH
Confidence 0 00001134688999999999999999999999999999999998754
No 81
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=95.16 E-value=0.0036 Score=68.67 Aligned_cols=65 Identities=29% Similarity=0.384 Sum_probs=0.0
Q ss_pred ceEEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEc-CHHHHHHHHHHHHHHHHh
Q 009566 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISG-DLDLAKDALIQVMTRLRA 444 (532)
Q Consensus 369 ~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G-~~~~v~~A~~~I~~~l~~ 444 (532)
.....+.||.+.++.|||++|.+|+.|.++||+.|.|. ++..|.|.+ +.+.+++|+.+|...+.+
T Consensus 559 p~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~-----------~dg~v~I~~~~~~~~~~a~~~i~~i~~~ 624 (723)
T 3cdi_A 559 PRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE-----------DDGTVKIAATDGEKAKHAIRRIEEITAE 624 (723)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred ceEEEEEECHHHhcccccccceeeeeeehhhCceEEec-----------CCccEEEecCCHHHHHHHHHHHHHHhhh
Confidence 45677899999999999999999999999999999883 235677777 467778887777666543
No 82
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=95.04 E-value=0.0056 Score=67.14 Aligned_cols=96 Identities=23% Similarity=0.269 Sum_probs=14.1
Q ss_pred ccCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCceEEEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCCCCCcccC
Q 009566 107 KFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCAL 186 (532)
Q Consensus 107 ~~v~~a~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~ 186 (532)
+.+..|.+++..+++.+.+..................+.||...++.+||++|.+|+.|.++||+.|.|..
T Consensus 527 ~~l~~A~~~~~~I~~~m~~al~~~~~~~~~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~--------- 597 (723)
T 3cdi_A 527 VALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED--------- 597 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhccccCceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC---------
Confidence 45667777877887765543322212222333456778899999999999999999999999999998853
Q ss_pred CCCceEEEEcC-HHHHHHHHHHHHHHHh
Q 009566 187 RSDELVQISGE-ASVVKKALCQIASRLH 213 (532)
Q Consensus 187 ~~~r~v~I~G~-~~~v~~A~~~I~~~l~ 213 (532)
+..|.|.+. .+.+.+|...|..++.
T Consensus 598 --dg~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 598 --DGTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp ----------------------------
T ss_pred --CccEEEecCCHHHHHHHHHHHHHHhh
Confidence 345777664 5667778777766653
No 83
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=94.44 E-value=0.055 Score=53.77 Aligned_cols=95 Identities=32% Similarity=0.432 Sum_probs=64.1
Q ss_pred CcccccccCCchhHHHHHhhh-CCeEEecCCCCCCCCeEEEEecCcchhhhhhHHHHHHHHhcccccccccc-cCCCcce
Q 009566 293 ANIGGVIGKGGAIINQIRQES-GAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIER-DSGLISF 370 (532)
Q Consensus 293 ~~~g~iIGk~G~~Ik~i~~~s-ga~I~i~~~~~~~~e~vi~i~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ 370 (532)
+-+|+.||.+|.+|+.+..+. |-+|.+-.-+.+ . ..-+..++ .|.-...+.- +. ...
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s~d-------------~----~~fi~nal--~Pa~v~~v~~~d~--~~~ 303 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDD-------------P----KQLIANAL--APATVIEVEILDK--ENK 303 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECCSS-------------H----HHHHHHHT--CSSCCSEEEEEET--TTT
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecCCC-------------H----HHHHHHhc--CccEEEEEEEEcC--CCC
Confidence 458999999999999999998 666655432211 0 00111111 1211111111 11 135
Q ss_pred EEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecC
Q 009566 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPK 408 (532)
Q Consensus 371 ~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~ 408 (532)
...+.||.++.+.-|||+|.+++--.+.||.+|.|.+.
T Consensus 304 ~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 304 AARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp EEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred EEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 67899999999999999999999999999999999653
No 84
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=94.17 E-value=0.0043 Score=68.32 Aligned_cols=94 Identities=23% Similarity=0.328 Sum_probs=38.2
Q ss_pred ccCCHHHHHHHHHHHHHHHhhhcCCCCCCCCCceEEEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCCCCCcccC
Q 009566 107 KFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCAL 186 (532)
Q Consensus 107 ~~v~~a~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~ 186 (532)
+.+..|.+++..|++.+.+..... ............|.||...++.+||++|.+|+.|.++||+.|.|..
T Consensus 566 ~aL~~A~~~~~~I~~~m~~al~~~-~~~~~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~--------- 635 (757)
T 1e3p_A 566 AALKQARDARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED--------- 635 (757)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSC-CCCCTTSCBCCCC------------------CTTCCCCCSCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-ccccccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC---------
Confidence 556777888888877665433222 2222223344568899999999999999999999999999998853
Q ss_pred CCCceEEEEcC-HHHHHHHHHHHHHHH
Q 009566 187 RSDELVQISGE-ASVVKKALCQIASRL 212 (532)
Q Consensus 187 ~~~r~v~I~G~-~~~v~~A~~~I~~~l 212 (532)
+..|.|... .+..++|+..|..+.
T Consensus 636 --dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 636 --DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp ------CCCBSSHHHHCC---------
T ss_pred --CceEEEecCCHHHHHHHHHHHHHhc
Confidence 345666654 566677766666544
No 85
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=94.05 E-value=0.0026 Score=70.02 Aligned_cols=63 Identities=25% Similarity=0.305 Sum_probs=22.4
Q ss_pred ceEEEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEc-CHHHHHHHHHHHHHHH
Q 009566 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISG-DLDLAKDALIQVMTRL 442 (532)
Q Consensus 369 ~~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G-~~~~v~~A~~~I~~~l 442 (532)
+....|.||.+.++.|||++|.+||+|+++||+.|.|. ++..|.|.. +.+.++.|+.+|..+.
T Consensus 597 p~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~-----------~dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 597 PRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIE-----------DDGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CBCCCC------------------CTTCCCCCSCC-------------------CCCBSSHHHHCC---------
T ss_pred ceeEEEEEChHHeehcccccceeeehhhHhhCCEEEec-----------CCceEEEecCCHHHHHHHHHHHHHhc
Confidence 34457899999999999999999999999999999984 145788887 4677777766665544
No 86
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=93.60 E-value=0.12 Score=51.31 Aligned_cols=96 Identities=24% Similarity=0.306 Sum_probs=62.6
Q ss_pred CccceEecCCchHHHHHHHHh-CCeEEEcCCCCCCCceEEEEEcCCccccccccCcccCCHHHHHHHHHHHHHHHhhhcC
Q 009566 52 RKIGSIIGRGGEIVKQLRIDT-KSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELRG 130 (532)
Q Consensus 52 ~~~g~IIGk~G~~Ik~i~~~t-ga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~~~i~~~~~~~ 130 (532)
+-+|+.||.+|..|+.+.++. |-+|.|-. =+.+- ...+...|.-..+..
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~-------------~s~d~-----------------~~fi~nal~Pa~v~~ 294 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLK-------------WSDDP-----------------KQLIANALAPATVIE 294 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEE-------------CCSSH-----------------HHHHHHHTCSSCCSE
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEe-------------cCCCH-----------------HHHHHHhcCccEEEE
Confidence 468999999999999999998 66666421 11110 001111110000000
Q ss_pred CCCCCCCCceEEEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecC
Q 009566 131 DEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKD 178 (532)
Q Consensus 131 ~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~ 178 (532)
- ....+....+.+.||..+.+..|||+|.|++-....||.+|.|...
T Consensus 295 v-~~~d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 295 V-EILDKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp E-EEEETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred E-EEEcCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 0 0000123368899999999999999999999999999999999764
No 87
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=71.67 E-value=1.5 Score=38.15 Aligned_cols=30 Identities=20% Similarity=-0.016 Sum_probs=25.6
Q ss_pred EEEEEecCCccceEecCCchHHHHHHHHhC
Q 009566 44 VYRYLCPIRKIGSIIGRGGEIVKQLRIDTK 73 (532)
Q Consensus 44 ~~~i~vp~~~~g~IIGk~G~~Ik~i~~~tg 73 (532)
++.+.+..+..|.||||.|.|++.|+--+.
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHH
Confidence 456667789999999999999999997763
No 88
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=62.81 E-value=2.5 Score=33.34 Aligned_cols=28 Identities=11% Similarity=0.266 Sum_probs=23.8
Q ss_pred EEEEecCCccceEecCCchHHHHHHHHh
Q 009566 45 YRYLCPIRKIGSIIGRGGEIVKQLRIDT 72 (532)
Q Consensus 45 ~~i~vp~~~~g~IIGk~G~~Ik~i~~~t 72 (532)
.++.|....-|.|||++|+.|++|+.+-
T Consensus 37 i~I~I~tarPg~vIGkkG~~Ie~L~~~l 64 (92)
T 1wh9_A 37 TEIIILATRTQNVLGEKGRRIRELTAVV 64 (92)
T ss_dssp EEEEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCcHHHHHHHHHH
Confidence 5777888889999999999999988653
No 89
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=56.55 E-value=3.3 Score=32.62 Aligned_cols=28 Identities=21% Similarity=0.465 Sum_probs=23.7
Q ss_pred EEEEEEecCcceeEecCCChhHHHHHHh
Q 009566 371 TTRLLVPTSRIGCLIGKGGSIITEMRRL 398 (532)
Q Consensus 371 ~~~i~VP~~~~G~IIGkgG~~Ik~I~~~ 398 (532)
..++.|....-|.|||++|..|++|+..
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 4678888888999999999999988653
No 90
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=51.10 E-value=34 Score=24.46 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=23.6
Q ss_pred CCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009566 418 DDEMVQISGDLDLAKDALIQVMTRLRAN 445 (532)
Q Consensus 418 ~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 445 (532)
++-.+.|+|-|++|.+-+..-.++|..+
T Consensus 40 ndleiritgvpeqvrkelakeaerlake 67 (85)
T 2kl8_A 40 NDLEIRITGVPEQVRKELAKEAERLAKE 67 (85)
T ss_dssp SCEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEecChHHHHHHHHHHHHHHHHh
Confidence 4567999999999999888888888765
No 91
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=49.94 E-value=8.9 Score=33.14 Aligned_cols=30 Identities=13% Similarity=-0.027 Sum_probs=25.8
Q ss_pred EEEEEeecCcccccccCCchhHHHHHhhhC
Q 009566 285 SLRLVCPVANIGGVIGKGGAIINQIRQESG 314 (532)
Q Consensus 285 ~~~v~vp~~~~g~iIGk~G~~Ik~i~~~sg 314 (532)
++.+.+..+..|.+|||.|.+++.|+--+.
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHH
Confidence 566777888999999999999999987764
No 92
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=45.85 E-value=18 Score=20.55 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=9.4
Q ss_pred CcCcCCCCCCCCCCCCCCCCCccc
Q 009566 4 QRNSYGKRSHSQTDYADHGPNKRR 27 (532)
Q Consensus 4 ~~~~~~~r~~~~~~~~~~~~~~~~ 27 (532)
+|+.+.||.+.=.|+ ++...++|
T Consensus 3 rrrrrrkrkrewddd-ddppkkrr 25 (28)
T 3ukx_C 3 RRRRRRKRKREWDDD-DDPPKKRR 25 (28)
T ss_dssp ---CCCCCCCCCCCS-SSCCSCCC
T ss_pred hhHHHHHhhcccccC-CCchhhhh
Confidence 345555666663333 34344443
No 93
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=37.14 E-value=10 Score=34.98 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=26.3
Q ss_pred EEEEecCCccceEecCCchHHHHHHHHhCCeE
Q 009566 45 YRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKI 76 (532)
Q Consensus 45 ~~i~vp~~~~g~IIGk~G~~Ik~i~~~tga~I 76 (532)
+.|.+..+..+.||||.|.+++.||.-+..-+
T Consensus 94 i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~v 125 (225)
T 3gku_A 94 MNVNLKGDDMGILIGKRGQTLDSLQYLVSLVV 125 (225)
T ss_dssp EEEEEECHHHHHCSTTHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCccceeecCCCeEhHHHHHHHHHHH
Confidence 45556677899999999999999998886443
No 94
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=33.94 E-value=49 Score=30.47 Aligned_cols=50 Identities=20% Similarity=0.349 Sum_probs=40.6
Q ss_pred EEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHH
Q 009566 372 TRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAK 432 (532)
Q Consensus 372 ~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~ 432 (532)
.-+.++...+.+++|+++..++.|.+.+++.|-|- .+-.|-|.++.....
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG-----------~NG~IWi~~~~~~~~ 187 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVG-----------QNGLIWVNGDRRKVS 187 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEEC-----------TTSEEEEESCHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEE-----------CCcEEEEeCCchhHH
Confidence 34689999999999999999999999999999882 234777998876333
No 95
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=32.70 E-value=86 Score=25.33 Aligned_cols=46 Identities=22% Similarity=0.344 Sum_probs=32.5
Q ss_pred hHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhc
Q 009566 391 IITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (532)
Q Consensus 391 ~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 445 (532)
.|++-++..|+--... +.++-.+.|+|-|++|.+-+..-.++|..+
T Consensus 104 mirqarkfagtvtytl---------~gn~l~i~itgvpeqvrkelakeaerl~~e 149 (170)
T 4hhu_A 104 MIRQARKFAGTVTYTL---------SGNRLVIVITGVPEQVRKELAKEAERLKAE 149 (170)
T ss_dssp HHHHHHHTTCEEEEEE---------CSSEEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcceEEEEE---------eCCEEEEEEeCCcHHHHHHHHHHHHHHHHh
Confidence 3666677777533222 123456999999999999888888888765
No 96
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=29.78 E-value=86 Score=25.33 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=32.8
Q ss_pred hHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhcc
Q 009566 391 IITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (532)
Q Consensus 391 ~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~~ 446 (532)
.|++-++..|+--.... .++-.+.|+|-|++|.+-+..-.++|..+.
T Consensus 23 mirqarkfagtvtytl~---------gn~l~i~itgvpeqvrkelakeaerl~~ef 69 (170)
T 4hhu_A 23 MIRQARKFAGTVTYTLS---------GNRLVIVITGVPEQVRKELAKEAERLKAEF 69 (170)
T ss_dssp HHHHHHHTTCEEEEEEE---------TTEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcceEEEEEe---------CCEEEEEEeCCcHHHHHHHHHHHHHHHHhc
Confidence 36666677775332221 234579999999999999888888888653
No 97
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.25 E-value=20 Score=32.67 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=23.0
Q ss_pred EEEEecCCccceEecCCchHHHHHHHHh
Q 009566 45 YRYLCPIRKIGSIIGRGGEIVKQLRIDT 72 (532)
Q Consensus 45 ~~i~vp~~~~g~IIGk~G~~Ik~i~~~t 72 (532)
.++.|....-|.|||++|..|++|+.+-
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~l 69 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRIL 69 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 4566777788999999999999987653
No 98
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=28.21 E-value=22 Score=33.20 Aligned_cols=28 Identities=21% Similarity=0.101 Sum_probs=24.2
Q ss_pred EEEEecCCccceEecCCchHHHHHHHHh
Q 009566 45 YRYLCPIRKIGSIIGRGGEIVKQLRIDT 72 (532)
Q Consensus 45 ~~i~vp~~~~g~IIGk~G~~Ik~i~~~t 72 (532)
.+|.|-...-|.|||++|+.|++|+.+-
T Consensus 49 i~I~I~tarPg~vIGkkG~~I~~L~~~L 76 (243)
T 2xzm_C 49 TEIRIKATKPQQVIGVEGKKHKELTQFL 76 (243)
T ss_dssp EEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCceEECCCchHHHHHHHHH
Confidence 5777888889999999999999988764
No 99
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=28.20 E-value=17 Score=33.79 Aligned_cols=28 Identities=11% Similarity=0.298 Sum_probs=23.9
Q ss_pred EEEEecCCccceEecCCchHHHHHHHHh
Q 009566 45 YRYLCPIRKIGSIIGRGGEIVKQLRIDT 72 (532)
Q Consensus 45 ~~i~vp~~~~g~IIGk~G~~Ik~i~~~t 72 (532)
.+|.|....-|.|||++|..|++|+.+-
T Consensus 46 i~I~I~t~rPg~VIGkkG~~I~~L~~~l 73 (240)
T 3u5c_D 46 TEVIIRATRTQDVLGENGRRINELTLLV 73 (240)
T ss_dssp EEEEEEESCHHHHHTTTTCTHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 5677788889999999999999988664
No 100
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=28.02 E-value=9.5 Score=35.26 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=40.8
Q ss_pred EEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCCCCCcccCCCCc-eEEEEcCHHHHHHHHHHHHHHHhc
Q 009566 142 AKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDE-LVQISGEASVVKKALCQIASRLHD 214 (532)
Q Consensus 142 ~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r-~v~I~G~~~~v~~A~~~I~~~l~~ 214 (532)
+.+.+.....+.|||+.|.++..|+.-+..-++-... ..-+ .|-|.|-.+.-.+.+..+...+.+
T Consensus 94 i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn~~~~--------~~~rv~LDi~~YR~rR~e~L~~lA~~~A~ 159 (225)
T 3gku_A 94 MNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVNKSSS--------DYIRVKLDTENYRERRKETLETLAKNIAY 159 (225)
T ss_dssp EEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHHHTCS--------SCCEEEEESTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCccceeecCCCeEhHHHHHHHHHHHHhcCC--------CceEEEEecchHHHHHHHHHHHHHHHHHH
Confidence 4555667789999999999999999887754422111 1112 334556566656666555555544
No 101
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=27.62 E-value=13 Score=37.06 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHHHHHhcCCC
Q 009566 197 EASVVKKALCQIASRLHDNPS 217 (532)
Q Consensus 197 ~~~~v~~A~~~I~~~l~~~~~ 217 (532)
..+.|..|.-.|+.++++.+.
T Consensus 79 ~~qlva~acLfLA~K~EE~p~ 99 (358)
T 2pk2_A 79 PGNSVAPAALFLAAKVEEQPK 99 (358)
T ss_dssp CHHHHHHHHHHHHHHHTTCCC
T ss_pred cHHHHHHHHHHHHHhhccCCC
Confidence 467777888888888888643
No 102
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=26.75 E-value=21 Score=33.14 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=23.7
Q ss_pred EEEEEEecCcceeEecCCChhHHHHHHh
Q 009566 371 TTRLLVPTSRIGCLIGKGGSIITEMRRL 398 (532)
Q Consensus 371 ~~~i~VP~~~~G~IIGkgG~~Ik~I~~~ 398 (532)
.+++.|....-|.|||++|+.|++|+..
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 4668888888999999999999988754
No 103
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=26.52 E-value=21 Score=34.42 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=29.6
Q ss_pred CcceEEEEEEecC-cceeEecCCChhHHHHHH--------hhCceEEE
Q 009566 367 LISFTTRLLVPTS-RIGCLIGKGGSIITEMRR--------LTKANIRI 405 (532)
Q Consensus 367 ~~~~~~~i~VP~~-~~G~IIGkgG~~Ik~I~~--------~Tga~I~i 405 (532)
...+...+.|..+ +-+-||||+|+.||+|.. ..+++|.+
T Consensus 237 ~~~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 237 MLVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp SEEEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred eEEEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 3457778888876 448899999999998865 45776665
No 104
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=26.29 E-value=90 Score=28.75 Aligned_cols=52 Identities=15% Similarity=0.264 Sum_probs=41.0
Q ss_pred EEEEEecCcceeEecCCChhHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEc-CHHHHHHH
Q 009566 372 TRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISG-DLDLAKDA 434 (532)
Q Consensus 372 ~~i~VP~~~~G~IIGkgG~~Ik~I~~~Tga~I~i~~~~~~P~~~~~~~r~V~I~G-~~~~v~~A 434 (532)
.-+.++...+..++|+++..+..|.+.+++.|-|-. +..|-|.+ ++..+..+
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~-----------NG~IWi~~~~~~~~~~~ 202 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR-----------NGRIHLECPNEDLEAIA 202 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET-----------TTEEEEECSCHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC-----------CCEEEEecCCHHHHHHH
Confidence 457899999999999999999999999999998832 45788887 44444433
No 105
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=25.43 E-value=17 Score=33.49 Aligned_cols=28 Identities=11% Similarity=0.271 Sum_probs=24.1
Q ss_pred EEEEecCCccceEecCCchHHHHHHHHh
Q 009566 45 YRYLCPIRKIGSIIGRGGEIVKQLRIDT 72 (532)
Q Consensus 45 ~~i~vp~~~~g~IIGk~G~~Ik~i~~~t 72 (532)
.++.|....-|.|||++|+.|++|+.+-
T Consensus 46 i~I~I~tarPg~vIGkkG~~I~~L~~~l 73 (227)
T 3iz6_B 46 TEIIIRATRTQNVLGEKGRRIRELTSVV 73 (227)
T ss_dssp ECCEEECTTHHHHHCSSSSHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 5677888899999999999999988654
No 106
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.29 E-value=21 Score=32.55 Aligned_cols=27 Identities=33% Similarity=0.666 Sum_probs=22.4
Q ss_pred EEEEEEecCcceeEecCCChhHHHHHH
Q 009566 371 TTRLLVPTSRIGCLIGKGGSIITEMRR 397 (532)
Q Consensus 371 ~~~i~VP~~~~G~IIGkgG~~Ik~I~~ 397 (532)
.+++.|....-|.|||++|+.|++|+.
T Consensus 41 ~~~I~I~t~rPg~vIG~~G~~I~~L~~ 67 (210)
T 3j20_C 41 GTKVIIFAANPGYVIGRGGRRIRELTR 67 (210)
T ss_dssp CCEEEEEESCHHHHHCSSSHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHH
Confidence 356777788889999999999998764
No 107
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=25.06 E-value=26 Score=32.69 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=24.7
Q ss_pred eEEEEEEecCcceeEecCCChhHHHHHHh
Q 009566 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRL 398 (532)
Q Consensus 370 ~~~~i~VP~~~~G~IIGkgG~~Ik~I~~~ 398 (532)
..+++.|....-|.|||++|+.|++|+..
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 34678888888999999999999998764
No 108
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=24.82 E-value=15 Score=36.45 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHHHHHHHhc
Q 009566 427 DLDLAKDALIQVMTRLRAN 445 (532)
Q Consensus 427 ~~~~v~~A~~~I~~~l~~~ 445 (532)
+.+.+......|++.++..
T Consensus 230 t~~~l~~i~~~il~~y~~~ 248 (358)
T 2pk2_A 230 TLELLDELTHEFLQILEKT 248 (358)
T ss_dssp CHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHHHHhC
Confidence 6788888888888776654
No 109
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=23.99 E-value=1.2e+02 Score=27.79 Aligned_cols=59 Identities=24% Similarity=0.311 Sum_probs=43.3
Q ss_pred EEEEEeCCceeeeeccCchHHHHHHhhhCceEEEecCCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHH
Q 009566 142 AKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASR 211 (532)
Q Consensus 142 ~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~ 211 (532)
+-+.++...+..++|+++..++.|.+.+++.|-+-. .-.|-|.++......+...|..+
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~-----------NG~IWi~~~~~~~~~~~~ai~~~ 196 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ-----------NGLIWVNGDRRKVSIAEEAIYLI 196 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT-----------TSEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEEC-----------CcEEEEeCCchhHHHHHHHHHHH
Confidence 335677777889999999999999999999998843 23477888877555555555443
No 110
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=23.49 E-value=17 Score=33.05 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=21.8
Q ss_pred EEEEecCCccceEecCCchHHHHHHHH
Q 009566 45 YRYLCPIRKIGSIIGRGGEIVKQLRID 71 (532)
Q Consensus 45 ~~i~vp~~~~g~IIGk~G~~Ik~i~~~ 71 (532)
.+|.|-...-|.|||++|+.|++|+.+
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~ 89 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKV 89 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 355666678889999999999988854
No 111
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.87 E-value=21 Score=32.85 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=23.8
Q ss_pred EEEEEEecCcceeEecCCChhHHHHHHh
Q 009566 371 TTRLLVPTSRIGCLIGKGGSIITEMRRL 398 (532)
Q Consensus 371 ~~~i~VP~~~~G~IIGkgG~~Ik~I~~~ 398 (532)
.+++.|....-|.|||++|+.|++|+..
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 4668888889999999999999988654
No 112
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=22.09 E-value=34 Score=32.91 Aligned_cols=37 Identities=14% Similarity=0.124 Sum_probs=27.7
Q ss_pred ceEEEEEecCC-ccceEecCCchHHHHHH--------HHhCCeEEE
Q 009566 42 DTVYRYLCPIR-KIGSIIGRGGEIVKQLR--------IDTKSKIRI 78 (532)
Q Consensus 42 ~~~~~i~vp~~-~~g~IIGk~G~~Ik~i~--------~~tga~I~i 78 (532)
.+...|+|..+ .-+.||||+|+.||+|. +.++++|.+
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 35566777775 56779999999999875 346777765
No 113
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=21.62 E-value=19 Score=33.32 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=21.9
Q ss_pred EEEEecCCccceEecCCchHHHHHHHH
Q 009566 45 YRYLCPIRKIGSIIGRGGEIVKQLRID 71 (532)
Q Consensus 45 ~~i~vp~~~~g~IIGk~G~~Ik~i~~~ 71 (532)
.+|.|-...-|.|||++|+.|++|+.+
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~~ 90 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRKV 90 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 455666778889999999999988854
No 114
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=21.53 E-value=1.2e+02 Score=23.97 Aligned_cols=51 Identities=8% Similarity=0.094 Sum_probs=34.5
Q ss_pred hHHHHHHhhhCceEEEecCCC--CCcccCCCCceEEEEcCHHHHHHHHHHHHHH
Q 009566 160 QIVQNIRSETGAQIRILKDEH--LPSCALRSDELVQISGEASVVKKALCQIASR 211 (532)
Q Consensus 160 ~~Ik~I~~~tga~I~i~~~~~--~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~ 211 (532)
.-|.+|..++++.++|..-.- +-.. .-..=+|.+.|+.+++.+|+..+.+.
T Consensus 36 PiIs~l~~~~~v~vnIL~g~I~~i~~~-~~G~L~v~l~G~~~~~~~ai~~L~~~ 88 (106)
T 3dhx_A 36 PLLSETARRFNVNNNIISAQMDYAGGV-KFGIMLTEMHGTQQDTQAAIAWLQEH 88 (106)
T ss_dssp CHHHHHHHHSCCEEEEEEEEEEEETTE-EEEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHCCCEEEEEEEeEEECCe-eEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 378899999999999875310 0000 00112678899999999998887653
No 115
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=21.50 E-value=45 Score=29.47 Aligned_cols=36 Identities=8% Similarity=0.111 Sum_probs=29.9
Q ss_pred ceEEEEEEecCcceeEecCCChhHHHH-HHhh--------Cc---eEEEec
Q 009566 369 SFTTRLLVPTSRIGCLIGKGGSIITEM-RRLT--------KA---NIRILP 407 (532)
Q Consensus 369 ~~~~~i~VP~~~~G~IIGkgG~~Ik~I-~~~T--------ga---~I~i~~ 407 (532)
.+...+.||.++.|.+|| .+|++| ++++ |+ .+.|..
T Consensus 6 ~l~~~i~I~P~~~~~~i~---~~I~~~L~~~~~gk~~~~~G~~i~~idi~~ 53 (187)
T 1go3_E 6 EIADVVKVPPEEFGKDLK---ETVKKILMEKYEGRLDKDVGFVLSIVDVKD 53 (187)
T ss_dssp EEEEEEEECGGGTTSCHH---HHHHHHHHHHHTTCEETTTEEEEEEEEEEE
T ss_pred EEEEEEEECHHHhCccHH---HHHHHHHHHHhCCeEcCCccEEEEEEEEee
Confidence 466789999999999999 699996 9999 87 566654
No 116
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.46 E-value=20 Score=33.40 Aligned_cols=28 Identities=11% Similarity=0.266 Sum_probs=24.0
Q ss_pred EEEEecCCccceEecCCchHHHHHHHHh
Q 009566 45 YRYLCPIRKIGSIIGRGGEIVKQLRIDT 72 (532)
Q Consensus 45 ~~i~vp~~~~g~IIGk~G~~Ik~i~~~t 72 (532)
.++.|-...-|.|||++|..|++|+.+-
T Consensus 46 i~I~I~tarPg~vIGkkG~~I~~L~~~L 73 (243)
T 2zkq_c 46 TEIIILATRTQNVLGEKGRRIRELTAVV 73 (243)
T ss_dssp ECCEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchHHHHHHHHH
Confidence 5677778889999999999999998764
Done!