Your job contains 1 sequence.
>009567
MHNEQSAPAVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETE
AFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVD
AEPFDAVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLGYPLEEVKQFSQPRFLE
RRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFE
LIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINAN
LRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAI
FQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRM
PLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRF
GIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADLLI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009567
(532 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2057996 - symbol:SIGF "AT2G36990" species:3702... 1265 6.6e-129 1
UNIPROTKB|Q84LK8 - symbol:SIG6 "Sig6" species:39947 "Oryz... 896 8.3e-90 1
TAIR|locus:2025650 - symbol:SIG2 "AT1G08540" species:3702... 648 1.6e-63 1
TIGR_CMR|APH_0576 - symbol:APH_0576 "RNA polymerase sigma... 467 1.5e-50 3
TIGR_CMR|DET_0551 - symbol:DET_0551 "RNA polymerase sigma... 461 6.0e-48 2
TIGR_CMR|CHY_0455 - symbol:CHY_0455 "RNA polymerase sigma... 495 2.6e-47 1
TIGR_CMR|GSU_3089 - symbol:GSU_3089 "RNA polymerase sigma... 487 1.8e-46 1
TIGR_CMR|CJE_1081 - symbol:CJE_1081 "RNA polymerase sigma... 450 4.7e-46 2
TIGR_CMR|GSU_1525 - symbol:GSU_1525 "RNA polymerase sigma... 434 4.7e-46 2
UNIPROTKB|Q59563 - symbol:mysB "RNA polymerase sigma fact... 481 7.9e-46 1
TIGR_CMR|BA_4515 - symbol:BA_4515 "RNA polymerase sigma-4... 481 7.9e-46 1
UNIPROTKB|P00579 - symbol:rpoD species:83333 "Escherichia... 445 9.7e-46 2
TIGR_CMR|SO_1284 - symbol:SO_1284 "RNA polymerase sigma-7... 445 3.3e-45 2
TIGR_CMR|SPO_1750 - symbol:SPO_1750 "RNA polymerase sigma... 440 5.6e-45 2
UNIPROTKB|P0A602 - symbol:rpoD "RNA polymerase sigma fact... 472 7.1e-45 1
TIGR_CMR|ECH_0760 - symbol:ECH_0760 "RNA polymerase sigma... 470 1.2e-44 1
TIGR_CMR|CPS_4334 - symbol:CPS_4334 "RNA polymerase sigma... 434 7.6e-44 2
UNIPROTKB|Q9KUK1 - symbol:VC_0517 "RNA polymerase sigma f... 459 1.7e-43 1
TIGR_CMR|VC_0517 - symbol:VC_0517 "RNA polymerase sigma f... 459 1.7e-43 1
TIGR_CMR|SO_3432 - symbol:SO_3432 "RNA polymerase sigma f... 457 2.8e-43 1
TIGR_CMR|CBU_1596 - symbol:CBU_1596 "RNA polymerase sigma... 459 3.8e-43 1
TIGR_CMR|VC_0534 - symbol:VC_0534 "RNA polymerase sigma f... 442 1.1e-41 1
TIGR_CMR|CPS_1079 - symbol:CPS_1079 "RNA polymerase sigma... 431 1.6e-40 1
UNIPROTKB|P13445 - symbol:rpoS "RNA polymerase, sigma S (... 423 1.1e-39 1
TIGR_CMR|CBU_1669 - symbol:CBU_1669 "RNA polymerase sigma... 423 1.1e-39 1
TAIR|locus:2084420 - symbol:SIGC "AT3G53920" species:3702... 420 2.3e-39 1
UNIPROTKB|O48655 - symbol:rsigA "Plastid RNA polymerase s... 406 7.0e-38 1
TAIR|locus:2173249 - symbol:SIG4 "AT5G13730" species:3702... 396 8.0e-37 1
TAIR|locus:2010871 - symbol:SIGA "AT1G64860" species:3702... 360 2.2e-32 1
TIGR_CMR|NSE_0312 - symbol:NSE_0312 "RNA polymerase sigma... 348 1.8e-31 2
UNIPROTKB|Q84JN3 - symbol:SIG5 "Os05g0586600 protein" spe... 350 1.0e-30 1
TAIR|locus:2167413 - symbol:SIGE "AT5G24120" species:3702... 331 6.2e-28 1
TIGR_CMR|GSU_0655 - symbol:GSU_0655 "RNA polymerase sigma... 272 4.3e-23 1
UNIPROTKB|P50511 - symbol:rpoH "RNA polymerase sigma-32 f... 261 7.0e-22 1
TIGR_CMR|VC_0150 - symbol:VC_0150 "RNA polymerase sigma-3... 261 7.0e-22 1
TIGR_CMR|BA_4042 - symbol:BA_4042 "RNA polymerase sigma-G... 257 1.9e-21 1
TIGR_CMR|SPO_0406 - symbol:SPO_0406 "RNA polymerase sigma... 252 6.8e-21 1
UNIPROTKB|P0AGB3 - symbol:rpoH species:83333 "Escherichia... 249 1.5e-20 1
TIGR_CMR|APH_0759 - symbol:APH_0759 "RNA polymerase sigma... 248 1.9e-20 1
TIGR_CMR|CPS_0161 - symbol:CPS_0161 "RNA polymerase sigma... 241 1.1e-19 1
TIGR_CMR|ECH_0655 - symbol:ECH_0655 "RNA polymerase sigma... 228 2.9e-18 1
TIGR_CMR|CHY_1959 - symbol:CHY_1959 "RNA polymerase sigma... 216 5.9e-17 1
TIGR_CMR|SO_4583 - symbol:SO_4583 "RNA polymerase sigma-3... 216 5.9e-17 1
TIGR_CMR|CBU_1909 - symbol:CBU_1909 "RNA polymerase sigma... 193 1.2e-16 2
TIGR_CMR|CHY_2055 - symbol:CHY_2055 "RNA polymerase sigma... 212 1.6e-16 1
TIGR_CMR|NSE_0341 - symbol:NSE_0341 "RNA polymerase sigma... 212 1.6e-16 1
TIGR_CMR|SPO_1409 - symbol:SPO_1409 "RNA polymerase sigma... 215 4.5e-16 1
UNIPROTKB|O32728 - symbol:O32728 "RNA polymerase sigma fa... 206 7.1e-16 1
TIGR_CMR|CHY_2056 - symbol:CHY_2056 "RNA polymerase sigma... 135 8.6e-16 2
TIGR_CMR|BA_4043 - symbol:BA_4043 "RNA polymerase sigma-2... 140 3.1e-14 2
UNIPROTKB|P0AEM6 - symbol:fliA "RNA polymerase, sigma 28 ... 184 1.7e-13 1
TIGR_CMR|BA_4294 - symbol:BA_4294 "RNA polymerase sigma-F... 184 3.5e-13 1
UNIPROTKB|Q7D5S2 - symbol:sigF "Alternative RNA polymeras... 180 8.1e-12 1
TIGR_CMR|GSU_3053 - symbol:GSU_3053 "RNA polymerase sigma... 166 3.7e-10 1
TIGR_CMR|CHY_1013 - symbol:CHY_1013 "RNA polymerase sigma... 159 3.4e-09 1
TIGR_CMR|CHY_0617 - symbol:CHY_0617 "RNA polymerase sigma... 149 3.4e-08 1
UNIPROTKB|O83707 - symbol:TP_0709 "RNA polymerase sigma f... 138 1.2e-06 1
TIGR_CMR|BA_4115 - symbol:BA_4115 "prophage LambdaBa02, R... 137 2.4e-06 1
TIGR_CMR|BA_4566 - symbol:BA_4566 "RNA polymerase sigma-2... 131 5.5e-06 1
UNIPROTKB|Q9KQD4 - symbol:VC_2066 "RNA polymerase sigma f... 126 2.3e-05 1
TIGR_CMR|VC_2066 - symbol:VC_2066 "RNA polymerase sigma f... 126 2.3e-05 1
UNIPROTKB|Q9K5J6 - symbol:sigB "RNA polymerase sigma-B fa... 126 2.8e-05 1
TIGR_CMR|BA_0992 - symbol:BA_0992 "RNA polymerase sigma-B... 126 2.8e-05 1
UNIPROTKB|Q48GG2 - symbol:fliA "RNA polymerase sigma fact... 124 3.7e-05 1
UNIPROTKB|Q884V7 - symbol:fliA "Motility sigma factor Fli... 124 4.1e-05 1
TIGR_CMR|CPS_1519 - symbol:CPS_1519 "motility sigma facto... 122 6.3e-05 1
TIGR_CMR|CJE_0058 - symbol:CJE_0058 "RNA polymerase sigma... 119 0.00012 1
TIGR_CMR|SO_3210 - symbol:SO_3210 "RNA polymerase sigma-2... 113 0.00067 1
>TAIR|locus:2057996 [details] [associations]
symbol:SIGF "AT2G36990" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=TAS]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0009536 "plastid"
evidence=IDA] [GO:0016987 "sigma factor activity" evidence=ISS;IDA]
[GO:0071483 "cellular response to blue light" evidence=IEP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA;IMP] [GO:0071482 "cellular response to light stimulus"
evidence=IMP] [GO:0090351 "seedling development" evidence=IMP]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0016117 "carotenoid biosynthetic
process" evidence=RCA] [GO:0019288 "isopentenyl diphosphate
biosynthetic process, mevalonate-independent pathway" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0009507 GO:GO:0045893
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AC006922
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 GO:GO:0090351
eggNOG:COG0568 HSSP:Q9EZJ8 GO:GO:0001053 InterPro:IPR016262
PIRSF:PIRSF000767 GO:GO:0071483 EMBL:AB029916 EMBL:AJ277389
EMBL:AY059768 EMBL:AY091182 EMBL:AJ250812 IPI:IPI00546728
PIR:B84787 PIR:T52653 RefSeq:NP_565856.1 UniGene:At.1453
ProteinModelPortal:Q9LD95 SMR:Q9LD95 IntAct:Q9LD95 STRING:Q9LD95
PaxDb:Q9LD95 PRIDE:Q9LD95 EnsemblPlants:AT2G36990.1 GeneID:818273
KEGG:ath:AT2G36990 GeneFarm:23 TAIR:At2g36990 InParanoid:Q9LD95
OMA:HIAKQYQ PhylomeDB:Q9LD95 ProtClustDB:CLSN2688741
Genevestigator:Q9LD95 Uniprot:Q9LD95
Length = 547
Score = 1265 (450.4 bits), Expect = 6.6e-129, P = 6.6e-129
Identities = 266/491 (54%), Positives = 340/491 (69%)
Query: 48 SQATSDSRNIETEAFFVEEKNSGDLDQLVQD--LEHQFLHWPDLWNL--SPPMKRGEDPS 103
S A D R T +E + +L +D E Q LH LWNL SP + P+
Sbjct: 71 SHALRDDR---TSQLTLERRQFDELVSSREDEKFEQQLLHSTGLWNLLISPLTSETKLPA 127
Query: 104 VSLTMQSLSNDTEESVDAEPFDXXXXXXXXXXXXXXXXXXXXNPKLNGAE-FTD-ISLTS 161
V + L+ DAE D + + N ++ D +S +S
Sbjct: 128 V---VSPLA-------DAELCDVVALAQKALSASKQAALLVDDTEANPSDNIKDSLSTSS 177
Query: 162 SLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLR 221
S+ P E+ R LERR+K R+ K + E Y +K S KKK +G D +D L+
Sbjct: 178 SMSLP-EKGNIVRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYKQGADNDDALQ 236
Query: 222 LFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRD 281
LFLWGPET++LLTA EE ELI+ IQ L++LEK K+KL+SQ G EPT+ EWA+A+G+S
Sbjct: 237 LFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPV 296
Query: 282 LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAG 341
LKS++H G SSREKLI ANLRLVVH+AKQYQ RG++ DLLQEGSMGLMKSVEKFKPQ+G
Sbjct: 297 LKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSG 356
Query: 342 CRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLA 401
CRFA+YAYWW+RQ+IRK+IFQ+SRTIRLPEN+Y LL KV EA++ +QEGN+ P KE+LA
Sbjct: 357 CRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELA 416
Query: 402 RRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHV 461
VG++ EKL++L++ TR PLSMQQP+W+DQDTTFQEIT D+G+E P +SV KQLMR HV
Sbjct: 417 GHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHV 476
Query: 462 RNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 521
RNLL +L+PKER I++LRFGI+ GK +SLSE+G I+GLSKERVRQLESRALYRLKQ++
Sbjct: 477 RNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNS 536
Query: 522 KASYGYADLLI 532
+ YADLL+
Sbjct: 537 HGLHAYADLLV 547
Score = 131 (51.2 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 35/106 (33%), Positives = 48/106 (45%)
Query: 1 MHNEQXXXXXXXXXXXXXXRHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETE 60
+H++ RHFP SVL QE R+E RPL H ++D+TSQ T + R +
Sbjct: 33 LHDQTTTPVVNSRHLNSLSRHFPASVLSQEPREESRPLSHALRDDRTSQLTLERRQFDE- 91
Query: 61 AFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNL--SPPMKRGEDPSV 104
V + + E Q LH LWNL SP + P+V
Sbjct: 92 --LVSSRED-------EKFEQQLLHSTGLWNLLISPLTSETKLPAV 128
>UNIPROTKB|Q84LK8 [details] [associations]
symbol:SIG6 "Sig6" species:39947 "Oryza sativa Japonica
Group" [GO:0009536 "plastid" evidence=RCA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AP008214 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 HSSP:Q9EZJ8 InterPro:IPR016262 PIRSF:PIRSF000767
OMA:HIAKQYQ ProtClustDB:CLSN2688741 EMBL:AB096012 EMBL:AP005249
EMBL:AP005478 EMBL:AK099922 RefSeq:NP_001061343.1 UniGene:Os.27634
STRING:Q84LK8 EnsemblPlants:LOC_Os08g14450.1 GeneID:4345044
KEGG:osa:4345044 HOGENOM:HOG000070749 Uniprot:Q84LK8
Length = 572
Score = 896 (320.5 bits), Expect = 8.3e-90, P = 8.3e-90
Identities = 176/357 (49%), Positives = 249/357 (69%)
Query: 177 RFLERRSKKRKVSKPQVTNHETY--NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLT 234
R LERRSK+R + + + NS+K KK + ++P +LFL ET + LT
Sbjct: 216 RLLERRSKRRYAPRASIADVSCSADNSKKKEKSKKYGRVLEPDEPFKLFLRDRETTEFLT 275
Query: 235 ADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSRE 294
A EE L ++IQ L+++E+ KL+ Q GREPTL EWA+A+G+S ++L+S + +G RE
Sbjct: 276 AKEERHLFSKIQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSIRTGRRCRE 335
Query: 295 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 354
K+ +N RLV+HVA++Y+G G+ + DL+Q+G GLMK+ EKF P GCRF +YAYWW+RQ
Sbjct: 336 KMARSNFRLVIHVARKYEGYGLDIQDLVQDGCSGLMKTFEKFNPSKGCRFPTYAYWWIRQ 395
Query: 355 TIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERL 414
+I+K+IF++SR IRLPE++Y LL KV +A+ I EG P ++ARR GIT+EKL +L
Sbjct: 396 SIKKSIFKNSRLIRLPESVYALLRKVGKARMECIMEGEQ-PTNANVARRAGITIEKLAKL 454
Query: 415 IFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERC 474
TR P SMQ VW+D+ TFQEIT D VE PD+SV + +MRQ VR+ L +L+P+E+
Sbjct: 455 RAKTRKPRSMQDHVWSDEGVTFQEITEDPNVEPPDLSVDRMMMRQQVRDFLGILSPREKE 514
Query: 475 IVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADLL 531
I+ RFGI DG+PK+L +G++FGLSKER+RQL++RAL +LK+S + Y DLL
Sbjct: 515 IIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRALEKLKRSASLQGFDVYFDLL 571
>TAIR|locus:2025650 [details] [associations]
symbol:SIG2 "AT1G08540" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0071482 "cellular response to light stimulus"
evidence=IEP;IMP] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IDA;TAS] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0006399 "tRNA metabolic process"
evidence=IMP] [GO:0001053 "plastid sigma factor activity"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0009637 "response to blue light"
evidence=IGI;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0006098 "pentose-phosphate shunt"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010218
"response to far red light" evidence=RCA] [GO:0016117 "carotenoid
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0034660 "ncRNA metabolic process" evidence=RCA]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00716
EMBL:CP002684 GO:GO:0009507 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009637
GO:GO:0010114 GO:GO:0009658 EMBL:AC006932 GO:GO:0006399
EMBL:AC003981 GO:GO:0071482 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 UniGene:At.23349 HSSP:Q9EZJ8
GO:GO:0001053 EMBL:AB004293 EMBL:AB019943 EMBL:AB004820
EMBL:AF015543 EMBL:Y15362 EMBL:AK118947 EMBL:BT030346
IPI:IPI00546921 PIR:T00707 RefSeq:NP_172330.1
ProteinModelPortal:O22056 SMR:O22056 STRING:O22056 PRIDE:O22056
EnsemblPlants:AT1G08540.1 GeneID:837376 KEGG:ath:AT1G08540
TAIR:At1g08540 InParanoid:O22056 OMA:WIKQAVR PhylomeDB:O22056
ProtClustDB:CLSN2682814 Genevestigator:O22056 InterPro:IPR016262
PIRSF:PIRSF000767 Uniprot:O22056
Length = 572
Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
Identities = 131/343 (38%), Positives = 215/343 (62%)
Query: 177 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKL-SEGFDRNDPLRLFLWGPETRKLLTA 235
R ER++++ K + + + + + KK+L ++ D NDPLR + KLLT
Sbjct: 216 RQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTV 275
Query: 236 DEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 295
EE EL A IQDL++LE+ +++L + GR+PT +WA A G+ + L+ +H G ++K
Sbjct: 276 REEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDK 335
Query: 296 LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 355
+I +N+RLV+ +AK YQG G++L DL+QEG GL++ EKF G +F++YA+WW++Q
Sbjct: 336 MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQA 395
Query: 356 IRKAIFQHSRTIRLPENIYTLLSKVLEA-KRLYIQEGNHSPDKEDLARRVGITVEKLERL 414
+RK++ SR IRLP ++ +V EA K+LY + G H P E++A G+++++L +
Sbjct: 396 VRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKH-PKNEEIAEATGLSMKRLMAV 454
Query: 415 IFITRMPLSMQQPVWADQDTTFQEITADT-GVEIPDISVQKQLMRQHVRNLLTLLNPKER 473
+ + P S+ Q + +Q+ E+ AD V DI + K+ MRQ + +L L +E+
Sbjct: 455 LLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILI-KEFMRQDLDKVLDSLGTREK 513
Query: 474 CIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 516
++R RFG+EDG+ K+L E+G + G+S+ERVRQ+ES A +LK
Sbjct: 514 QVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 556
>TIGR_CMR|APH_0576 [details] [associations]
symbol:APH_0576 "RNA polymerase sigma factor RpoD"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393 OMA:KISFICE
ProtClustDB:CLSK749621 RefSeq:YP_505167.1 ProteinModelPortal:Q2GKD4
SMR:Q2GKD4 STRING:Q2GKD4 GeneID:3930981 KEGG:aph:APH_0576
PATRIC:20949818 BioCyc:APHA212042:GHPM-600-MONOMER Uniprot:Q2GKD4
Length = 627
Score = 467 (169.5 bits), Expect = 1.5e-50, Sum P(3) = 1.5e-50
Identities = 91/241 (37%), Positives = 154/241 (63%)
Query: 288 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASY 347
+ N +++++I ANLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF + G +F++Y
Sbjct: 386 TANRAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRGYKFSTY 445
Query: 348 AYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGIT 407
A WWVRQ I +AI +RTIR+P ++ ++K+ R + E P E+L+ R+ I
Sbjct: 446 ATWWVRQAITRAIADQARTIRIPVHMIETVNKINRTLRQMLHEIGREPTLEELSARLNIN 505
Query: 408 VEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTL 467
VEK+ +++ I + P+S++ P+ D +TF + D P+ + +R+ +L+
Sbjct: 506 VEKIRKVMKIVKDPVSLESPIGDDDSSTFGDCIEDKRAVKPENAAVLADLREITTKVLST 565
Query: 468 LNPKERCIVRLRFGI-EDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYG 526
L PKE I+R+RFGI + GK +L EVG +F +++ER+RQ+E++AL +L+ + G
Sbjct: 566 LTPKEERILRMRFGIGKSGKDHTLEEVGRLFNVTRERIRQIEAKALRKLRHPSRARKLRG 625
Query: 527 Y 527
+
Sbjct: 626 F 626
Score = 47 (21.6 bits), Expect = 1.5e-50, Sum P(3) = 1.5e-50
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 217 NDPLRLFLWGPETRKLLTADEEFELIAQIQ 246
+DP+R++L + +LL+ + E E+ +I+
Sbjct: 96 DDPIRMYLCEMSSVELLSREGEIEIAKRIK 125
Score = 40 (19.1 bits), Expect = 1.5e-50, Sum P(3) = 1.5e-50
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 100 EDPSVSLTMQSLSNDTEESVDAE 122
+D +S+ QS +DT+++V E
Sbjct: 53 QDSGISVLEQSDVDDTDDTVTGE 75
>TIGR_CMR|DET_0551 [details] [associations]
symbol:DET_0551 "RNA polymerase sigma factor RpoD"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:YP_181295.1 ProteinModelPortal:Q3Z904 SMR:Q3Z904
STRING:Q3Z904 GeneID:3230115 KEGG:det:DET0551 PATRIC:21608171
OMA:FISHLER ProtClustDB:CLSK935624
BioCyc:DETH243164:GJNF-551-MONOMER Uniprot:Q3Z904
Length = 520
Score = 461 (167.3 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
Identities = 86/232 (37%), Positives = 154/232 (66%)
Query: 285 ELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRF 344
E+ + + R LI ANLRLVV VAK++ GRG+ L DL+QEG++GL+++VEKF G +F
Sbjct: 277 EIDAKRAERH-LIQANLRLVVSVAKKHIGRGMPLLDLIQEGNIGLIRAVEKFDFHRGFKF 335
Query: 345 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRV 404
++YA WW+RQ I +AI +RTIR+P ++ ++K+L R Q+ P +++A +
Sbjct: 336 STYATWWIRQAITRAIADQARTIRIPVHMVETINKLLSISRQLSQKLGREPTPDEIAVEM 395
Query: 405 GITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNL 464
+ EK+ + ++++P+S++ P+ ++D+ + D P + +QL+++ + +
Sbjct: 396 DLPPEKVREIAKVSQLPVSLESPIGEEEDSHLGDFIEDQNALAPPDAASRQLLKEQIDTV 455
Query: 465 LTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 516
L L P+ER +++LRFG+EDG+ ++L EVG F +++ER+RQ+E++AL +L+
Sbjct: 456 LGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLR 507
Score = 57 (25.1 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
Identities = 14/54 (25%), Positives = 31/54 (57%)
Query: 217 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE 270
+DP+R++L LL+A++E L ++++ R+ + + + + GR P+ E
Sbjct: 98 DDPVRMYLHEIGRVPLLSAEDEKTLAKKMEEGKRIREIRQECLEKRGRYPSAAE 151
>TIGR_CMR|CHY_0455 [details] [associations]
symbol:CHY_0455 "RNA polymerase sigma factor RpoD"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007127 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 HOGENOM:HOG000270273
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG0568 KO:K03086 TIGRFAMs:TIGR02393 RefSeq:YP_359316.1
ProteinModelPortal:Q3AEW8 SMR:Q3AEW8 STRING:Q3AEW8 GeneID:3727139
KEGG:chy:CHY_0455 PATRIC:21274071 OMA:IDTIEDT ProtClustDB:PRK09210
BioCyc:CHYD246194:GJCN-456-MONOMER Uniprot:Q3AEW8
Length = 370
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 100/280 (35%), Positives = 174/280 (62%)
Query: 237 EEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKL 296
+E +L I + I ++ + GR P L + I L+ R K E ++ KL
Sbjct: 83 DEVDLDLTIPEGIAIDDPVRMYLKEIGRVPLLTP-EEEIELAKR--KEE--GDEEAKRKL 137
Query: 297 INANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTI 356
ANLRLVV +AK+Y GRG+ DL+QEG++GL+K+VEKF + G +F++YA WW+RQ I
Sbjct: 138 AEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWIRQAI 197
Query: 357 RKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 416
+AI +RTIR+P ++ ++K++ R +QE P E++A+ +GI+ +K+ ++
Sbjct: 198 TRAIADQARTIRIPVHMVETINKLIRVSRNLLQELGREPTPEEIAKEMGISEDKVREIMK 257
Query: 417 ITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIV 476
I + P+S++ P+ ++D+ + D + P L+R+ + +L L +E+ ++
Sbjct: 258 IAQEPVSLETPIGEEEDSHLGDFVEDPDAKAPVEEASYTLLREQLDEVLKTLTEREQKVL 317
Query: 477 RLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 516
RLRFG++DG+ ++L EVG IFG+++ER+RQ+E++AL +L+
Sbjct: 318 RLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKLR 357
>TIGR_CMR|GSU_3089 [details] [associations]
symbol:GSU_3089 "RNA polymerase sigma factor RpoD"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:NP_954130.1 ProteinModelPortal:Q748B8 SMR:Q748B8
GeneID:2686774 KEGG:gsu:GSU3089 PATRIC:22029033 OMA:REMGSVS
ProtClustDB:CLSK924660 BioCyc:GSUL243231:GH27-3063-MONOMER
Uniprot:Q748B8
Length = 577
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 117/375 (31%), Positives = 211/375 (56%)
Query: 156 DISLTSSLGYPLEEVKQFSQPR---FLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSE 212
D+ L ++L LEE + R ER+ K K+++ VT+ + A + ++L E
Sbjct: 192 DVRL-AALNAELEEESLSASRRQELLAERQELKEKLAE-MVTSLRLKDRHIAKIAQRLKE 249
Query: 213 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQ--IQDLIRLEKEKSKLQSQFGR--EPTL 268
+ D + + E ++AD E+ A + I+L E ++ + R E L
Sbjct: 250 LSAKVDTIMAEIAAIEKEAGVSADTLKEIAASEAVGKGIKLSLEDAQKHEKKVRSAEKKL 309
Query: 269 IEWAKAIGLSCRDLKSELHS---GNS----SREKLINANLRLVVHVAKQYQGRGISLHDL 321
+ + G R+L L + G + ++ +L+ ANLRLVV +AK+Y RG+ DL
Sbjct: 310 KKVEEESGFKARELSDALRAIDRGEAKSKLAKSELVEANLRLVVSIAKKYTNRGLQFLDL 369
Query: 322 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVL 381
+QEG++GLMK+V+KF+ Q G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++
Sbjct: 370 IQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLI 429
Query: 382 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITA 441
R +QE P E++A R+ + ++K+ +++ I + P+S++ P+ ++D+ +
Sbjct: 430 RTSRQLVQEIGREPSPEEIAERMNLPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIE 489
Query: 442 DTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSK 501
D GV P +V K + + +L L P+E ++R+RFGI + +L EVG F +++
Sbjct: 490 DKGVVSPLEAVIKANLSEQTARVLATLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTR 549
Query: 502 ERVRQLESRALYRLK 516
ER+RQ+E++AL +L+
Sbjct: 550 ERIRQIEAKALRKLR 564
>TIGR_CMR|CJE_1081 [details] [associations]
symbol:CJE_1081 "RNA polymerase sigma factor RpoD"
species:195099 "Campylobacter jejuni RM1221" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
ProtClustDB:PRK05658 RefSeq:YP_179074.1 ProteinModelPortal:Q5HUG1
SMR:Q5HUG1 STRING:Q5HUG1 GeneID:3231590 KEGG:cjr:CJE1081
PATRIC:20043971 OMA:ILDAICS BioCyc:CJEJ195099:GJC0-1107-MONOMER
Uniprot:Q5HUG1
Length = 622
Score = 450 (163.5 bits), Expect = 4.7e-46, Sum P(2) = 4.7e-46
Identities = 91/293 (31%), Positives = 175/293 (59%)
Query: 238 EFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLI 297
E +++ ++ +L + K + F E + + K I +K + ++ ++
Sbjct: 333 ETTMVSTYMEIKKLFQTKEASEKSFDLEKSRL---KEI---LEQIKRGKKISDEAKGRMA 386
Query: 298 NANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIR 357
+NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA WW+RQ I
Sbjct: 387 KSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAIS 446
Query: 358 KAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 417
+AI +RTIR+P ++ ++++ + R ++Q+ PD +A+ VG++V+K++++I I
Sbjct: 447 RAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVIKI 506
Query: 418 TRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVR 477
T+ P+S++ P+ + D F + D P + K +++ + +L LN +E+ ++R
Sbjct: 507 TKEPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAVIR 566
Query: 478 LRFGI-EDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYAD 529
+RFG+ +D ++L E+G +++ERVRQ+ES A+ +LK G+ Y +
Sbjct: 567 MRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIE 619
Score = 50 (22.7 bits), Expect = 4.7e-46, Sum P(2) = 4.7e-46
Identities = 19/76 (25%), Positives = 39/76 (51%)
Query: 172 QFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRND-PLRLFLWGPETR 230
+ +Q + +E +K+ + K ++ + N + + L E + R+D P+R++L
Sbjct: 59 EIAQMKNIED-AKRLQEEKQKLQDTSLENEFDLANENDLLE-WSRSDSPVRMYLREMGQI 116
Query: 231 KLLTADEEFELIAQIQ 246
LL DEE E+ +I+
Sbjct: 117 ALLNKDEEIEISKKIE 132
>TIGR_CMR|GSU_1525 [details] [associations]
symbol:GSU_1525 "RNA polymerase sigma-70 factor family"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AE017180 GenomeReviews:AE017180_GR HOGENOM:HOG000270273
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03086 OMA:IDTIEDT RefSeq:NP_952576.1 ProteinModelPortal:Q74CZ4
SMR:Q74CZ4 GeneID:2687268 KEGG:gsu:GSU1525 PATRIC:22025893
ProtClustDB:CLSK828404 BioCyc:GSUL243231:GH27-1508-MONOMER
Uniprot:Q74CZ4
Length = 328
Score = 434 (157.8 bits), Expect = 4.7e-46, Sum P(2) = 4.7e-46
Identities = 83/239 (34%), Positives = 152/239 (63%)
Query: 280 RDLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 338
++L + G+ ++R+K+I +NLRLVV +AK+Y RG+ DL++EG+MGL+K+VE+FK
Sbjct: 79 KELAGRIAKGDKAARDKMIESNLRLVVKIAKRYINRGLPFLDLIEEGNMGLIKAVERFKL 138
Query: 339 QAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKE 398
CRF++YA WW+RQ+I +A+ SRTIRLP ++ ++K+L+ R +Q N P +
Sbjct: 139 SKECRFSTYATWWIRQSIERALVNQSRTIRLPVHVSDDINKMLKITRELVQRLNREPSVK 198
Query: 399 DLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMR 458
++A + + + RL+ + + S+++P+ + D + DT P + ++
Sbjct: 199 EVATEMKVNSAYVRRLMVLLKKTYSIERPMGENSDYFLIDTIEDTSTVSPAVLLEDLNKY 258
Query: 459 QHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517
+ V L+ E+ I+ LRFG+ED +P++L +G FG+++ER+RQ+E+++L +L++
Sbjct: 259 EIVSKWFASLSENEQTILTLRFGLEDKEPQTLDTIGRSFGVTRERIRQIEAKSLEKLRK 317
Score = 66 (28.3 bits), Expect = 4.7e-46, Sum P(2) = 4.7e-46
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 192 QVTNHETYNSRKASVKKKLS-EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQI 245
+ E A V K + E FD D ++L+L + +LLTADEE EL +I
Sbjct: 33 EAAEEEEEPEEPAEVGKNIEQEHFD--DAIKLYLREIQRTRLLTADEEKELAGRI 85
>UNIPROTKB|Q59563 [details] [associations]
symbol:mysB "RNA polymerase sigma factor" species:1773
"Mycobacterium tuberculosis" [GO:0001666 "response to hypoxia"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009408 "response to heat"
evidence=IEP] [GO:0009410 "response to xenobiotic stimulus"
evidence=IEP] [GO:0016987 "sigma factor activity" evidence=IGI]
[GO:0019217 "regulation of fatty acid metabolic process"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] [GO:0043175 "RNA
polymerase core enzyme binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0050708 "regulation of protein secretion" evidence=IDA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0045893 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0003677 GO:GO:0001666
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0019217 GO:GO:0009408 GO:GO:0009410 GO:GO:0050708
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0043175 EMBL:U10059 KO:K03087 HSSP:Q9EZJ8
EMBL:AL123456 PIR:JC5011 RefSeq:NP_217226.1 RefSeq:NP_337285.1
RefSeq:YP_006516154.1 SMR:Q59563 EnsemblBacteria:EBMYCT00000003840
EnsemblBacteria:EBMYCT00000072906 GeneID:13319437 GeneID:888580
GeneID:925516 KEGG:mtc:MT2783 KEGG:mtu:Rv2710 KEGG:mtv:RVBD_2710
PATRIC:18127862 TubercuList:Rv2710 OMA:DHARDPV ProtClustDB:PRK07921
Uniprot:Q59563
Length = 323
Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 96/251 (38%), Positives = 163/251 (64%)
Query: 268 LIEWAKAIGLSC-RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGS 326
L+E K +G + RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG+
Sbjct: 61 LLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 120
Query: 327 MGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRL 386
+GL++++EKF G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR
Sbjct: 121 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 180
Query: 387 YIQE-GNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGV 445
Q G + D E+LA GI ++K+ L+ +R P+S+ PV ++++ + D
Sbjct: 181 MHQHLGREATD-EELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEA 239
Query: 446 EIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVR 505
+ +V +L+ +R++L L+ +E ++RLRFG++DG+P++L ++G +FGLS+ERVR
Sbjct: 240 MSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVR 299
Query: 506 QLESRALYRLK 516
Q+E + +L+
Sbjct: 300 QIERDVMSKLR 310
>TIGR_CMR|BA_4515 [details] [associations]
symbol:BA_4515 "RNA polymerase sigma-43 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 KO:K03086 TIGRFAMs:TIGR02393 HSSP:Q9EZJ8
ProtClustDB:PRK09210 RefSeq:NP_846739.1 RefSeq:YP_021160.1
RefSeq:YP_030442.1 ProteinModelPortal:Q81LU5 SMR:Q81LU5
IntAct:Q81LU5 DNASU:1088240 EnsemblBacteria:EBBACT00000011556
EnsemblBacteria:EBBACT00000017175 EnsemblBacteria:EBBACT00000020140
GeneID:1088240 GeneID:2819028 GeneID:2852221 KEGG:ban:BA_4515
KEGG:bar:GBAA_4515 KEGG:bat:BAS4194 OMA:AERMSSF
BioCyc:BANT260799:GJAJ-4250-MONOMER
BioCyc:BANT261594:GJ7F-4392-MONOMER Uniprot:Q81LU5
Length = 373
Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 95/293 (32%), Positives = 176/293 (60%)
Query: 226 GPETRKLLTADEEFELI-AQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKS 284
GP ++ +EEF+L + +++ + GR L+ + I L+ R
Sbjct: 74 GPNNHQITKTEEEFDLNDLSVPPGVKINDPVRMYLKEIGRVD-LLSAEEEIRLATR---- 128
Query: 285 ELHSGNS-SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCR 343
+ G+ ++ +L ANLRLVV +AK+Y GRG+ DL+QEG+MGL+K+VEKF + G +
Sbjct: 129 -IEEGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFK 187
Query: 344 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARR 403
F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+ P E++
Sbjct: 188 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEE 247
Query: 404 VGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRN 463
+ + EK+ ++ I + P+S++ P+ + D+ + D P +L+++ + +
Sbjct: 248 MDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLED 307
Query: 464 LLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 516
+L L +E ++RLRFG++DG+ ++L EVG +FG+++ER+RQ+E++AL +L+
Sbjct: 308 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 360
>UNIPROTKB|P00579 [details] [associations]
symbol:rpoD species:83333 "Escherichia coli K-12"
[GO:0016987 "sigma factor activity" evidence=IEA;IDA] [GO:0009408
"response to heat" evidence=IEP] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000943 InterPro:IPR007127 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR007631
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0009408 EMBL:U28379 PDB:1TLH PDBsum:1TLH GO:GO:0016987
PDB:3IYD PDBsum:3IYD SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 EMBL:J01687 PDB:3T72 PDBsum:3T72 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393
PIR:A65095 RefSeq:NP_417539.1 RefSeq:YP_491259.1 PDB:1SIG PDB:2P7V
PDBsum:1SIG PDBsum:2P7V ProteinModelPortal:P00579 SMR:P00579
DIP:DIP-10773N IntAct:P00579 MINT:MINT-1220595 PaxDb:P00579
PRIDE:P00579 EnsemblBacteria:EBESCT00000001124
EnsemblBacteria:EBESCT00000001125 EnsemblBacteria:EBESCT00000001126
EnsemblBacteria:EBESCT00000001127 EnsemblBacteria:EBESCT00000001128
EnsemblBacteria:EBESCT00000001129 EnsemblBacteria:EBESCT00000001130
EnsemblBacteria:EBESCT00000017672 GeneID:12932074 GeneID:947567
KEGG:ecj:Y75_p2993 KEGG:eco:b3067 PATRIC:32121550 EchoBASE:EB0889
EcoGene:EG10896 ProtClustDB:PRK05658 BioCyc:EcoCyc:RPOD-MONOMER
BioCyc:ECOL316407:JW3039-MONOMER BioCyc:MetaCyc:RPOD-MONOMER
BindingDB:P00579 ChEMBL:CHEMBL5329 EvolutionaryTrace:P00579
Genevestigator:P00579 Uniprot:P00579
Length = 613
Score = 445 (161.7 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
Identities = 93/261 (35%), Positives = 161/261 (61%)
Query: 257 KLQSQFGREPTL-IEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 315
KLQ Q E L IE K I R + ++++++ ANLRLV+ +AK+Y RG
Sbjct: 343 KLQ-QIEEETGLTIEQVKDIN---RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRG 398
Query: 316 ISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYT 375
+ DL+QEG++GLMK+V+KF+ + G +F++YA WW+RQ I ++I +RTIR+P ++
Sbjct: 399 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE 458
Query: 376 LLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTT 435
++K+ R +QE P E+LA R+ + +K+ +++ I + P+SM+ P+ D+D+
Sbjct: 459 TINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH 518
Query: 436 FQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGN 495
+ DT +E+P S + +R ++L L +E ++R+RFGI+ +L EVG
Sbjct: 519 LGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGK 578
Query: 496 IFGLSKERVRQLESRALYRLK 516
F +++ER+RQ+E++AL +L+
Sbjct: 579 QFDVTRERIRQIEAKALRKLR 599
Score = 52 (23.4 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 218 DPLRLFLWGPETRKLLTADEEFELIAQIQD 247
DP+R+++ T +LLT + E ++ +I+D
Sbjct: 96 DPVRMYMREMGTVELLTREGEIDIAKRIED 125
>TIGR_CMR|SO_1284 [details] [associations]
symbol:SO_1284 "RNA polymerase sigma-70 factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 HOGENOM:HOG000270272
KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393 RefSeq:NP_716906.1
ProteinModelPortal:Q8EHE1 SMR:Q8EHE1 GeneID:1169104
KEGG:son:SO_1284 PATRIC:23522218 ProtClustDB:CLSK906181
Uniprot:Q8EHE1
Length = 616
Score = 445 (161.7 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
Identities = 81/225 (36%), Positives = 148/225 (65%)
Query: 292 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 351
++++++ ANLRLV+ +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA WW
Sbjct: 378 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 437
Query: 352 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 411
+RQ I ++I +RTIR+P ++ ++K+ R +QE P E+LA R+ + +K+
Sbjct: 438 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMMMPEDKI 497
Query: 412 ERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPK 471
+++ I + P+SM+ P+ D+D+ + DT +E+P S + ++ +L L +
Sbjct: 498 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLKSATHEVLAGLTAR 557
Query: 472 ERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 516
E ++R+RFGI+ +L EVG F +++ER+RQ+E++AL +L+
Sbjct: 558 EAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 602
Score = 47 (21.6 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 194 TNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK 253
T+ + A++ SE DP+R+++ T +LLT + E +IA+ R+E+
Sbjct: 72 TDEDAAEEAAAALATVESELGRTTDPVRMYMREMGTVELLTREGEI-VIAK-----RIEE 125
Query: 254 EKSKLQSQFGREPTLI 269
+ +QS P I
Sbjct: 126 GINTVQSSVAEYPQAI 141
>TIGR_CMR|SPO_1750 [details] [associations]
symbol:SPO_1750 "RNA polymerase sigma-70 factor RpoD"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007127
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR007631 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
Pfam:PF04546 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
ProtClustDB:PRK05658 RefSeq:YP_166988.1 ProteinModelPortal:Q5LSL7
SMR:Q5LSL7 GeneID:3193502 KEGG:sil:SPO1750 PATRIC:23376823
OMA:YQGSELD Uniprot:Q5LSL7
Length = 660
Score = 440 (159.9 bits), Expect = 5.6e-45, Sum P(2) = 5.6e-45
Identities = 84/235 (35%), Positives = 151/235 (64%)
Query: 283 KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 342
K E + + +E ++ ANLRLV+ +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G
Sbjct: 414 KGEKEARQAKKE-MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGY 472
Query: 343 RFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLAR 402
+F++YA WW+RQ I ++I +RTIR+P ++ ++K++ R + E P E+LA
Sbjct: 473 KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAE 532
Query: 403 RVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIP-DISVQKQLMRQHV 461
++ + +EK+ +++ I + P+S++ P+ ++D+ + D +P D ++Q+ L
Sbjct: 533 KLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTT 592
Query: 462 RNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 516
R +L L P+E ++R+RFGI +L EVG F +++ER+RQ+E++AL +LK
Sbjct: 593 R-VLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 646
Score = 55 (24.4 bits), Expect = 5.6e-45, Sum P(2) = 5.6e-45
Identities = 17/68 (25%), Positives = 38/68 (55%)
Query: 180 ERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDR-NDPLRLFLWGPETRKLLTADEE 238
E +++K S +T T ++R+ ++ +E DR +DP+R++L + +LL+ + E
Sbjct: 79 EAEEEEQKGSTDLIT---TESNREVALAGAQAEKLDRTDDPVRMYLREMGSVELLSREGE 135
Query: 239 FELIAQIQ 246
+ +I+
Sbjct: 136 IAIAKRIE 143
>UNIPROTKB|P0A602 [details] [associations]
symbol:rpoD "RNA polymerase sigma factor RpoD" species:1773
"Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005618 "cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0009405 "pathogenesis" evidence=IMP] [GO:0009415
"response to water stimulus" evidence=IEP] [GO:0016987 "sigma
factor activity" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
[GO:0052572 "response to host immune response" evidence=IEP]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 GO:GO:0009405 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0003677 GO:GO:0052572
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
HOGENOM:HOG000270273 GO:GO:0016987 GO:GO:0009415 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03086
TIGRFAMs:TIGR02393 EMBL:U10059 EMBL:U21134 PIR:B70531
RefSeq:NP_217219.1 RefSeq:NP_337278.1 RefSeq:YP_006516147.1
ProteinModelPortal:P0A602 SMR:P0A602 PRIDE:P0A602
EnsemblBacteria:EBMYCT00000003025 EnsemblBacteria:EBMYCT00000070252
GeneID:13319430 GeneID:887477 GeneID:925521 KEGG:mtc:MT2777
KEGG:mtu:Rv2703 KEGG:mtv:RVBD_2703 PATRIC:18127848
TubercuList:Rv2703 OMA:LMSEMAE ProtClustDB:PRK05901 Uniprot:P0A602
Length = 528
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 102/312 (32%), Positives = 187/312 (59%)
Query: 218 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 277
D +R +L LL A+EE EL +I+ + + ++L S+ G + + + +
Sbjct: 226 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTEL-SERGEKLPAAQRRDMMWI 284
Query: 278 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 337
CRD G+ ++ L+ ANLRLVV +AK+Y GRG++ DL+QEG++GL+++VEKF
Sbjct: 285 -CRD-------GDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 336
Query: 338 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 397
G +F++YA WW+RQ I +A+ +RTIR+P ++ +++K+ +R +Q+ P
Sbjct: 337 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTP 396
Query: 398 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLM 457
E+LA+ + IT EK+ + R P+S+ Q + + D+ + D+ + +V L+
Sbjct: 397 EELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLL 456
Query: 458 RQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517
+ ++++L L+ +E +VRLRFG+ DG+P++L E+G ++G+++ER+RQ+ES+ + +L+
Sbjct: 457 QDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRH 516
Query: 518 SLGGKASYGYAD 529
+ Y D
Sbjct: 517 PSRSQVLRDYLD 528
>TIGR_CMR|ECH_0760 [details] [associations]
symbol:ECH_0760 "RNA polymerase sigma factor RpoD"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:YP_507558.1 ProteinModelPortal:Q2GG75 SMR:Q2GG75
STRING:Q2GG75 GeneID:3927201 KEGG:ech:ECH_0760 PATRIC:20576954
OMA:KISFICE ProtClustDB:CLSK749621
BioCyc:ECHA205920:GJNR-763-MONOMER Uniprot:Q2GG75
Length = 622
Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 113/319 (35%), Positives = 186/319 (58%)
Query: 211 SEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE 270
S G R D L + +K T+ + ++ + I K KL S G E L E
Sbjct: 311 SYGIQRKDFLDAYNTNSVLQKKGTSPQWDNMLLNEESNIVSMYSKIKLLS--G-ENNLTE 367
Query: 271 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 330
+ KA+ + K E + N +++++I ANLRLVV +AK+Y RG+ DL+QEG++GLM
Sbjct: 368 F-KALVTKIQ--KHE-RAANQAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLM 423
Query: 331 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQE 390
K+V+KF + G +F++YA WWVRQ I +AI +RTIR+P ++ ++K+ R + E
Sbjct: 424 KAVDKFDYKRGYKFSTYATWWVRQAITRAIADQARTIRIPVHMIETVNKINRTLRQMLHE 483
Query: 391 GNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADT-GVEIPD 449
P E+L+ R+ I V+K+ +++ I + P+S++ P+ D +TF + D V+ D
Sbjct: 484 MGREPTLEELSARLNINVDKIRKVMKIVKDPVSLESPIGDDDSSTFGDCIEDKRAVKPED 543
Query: 450 ISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGI-EDGKPKSLSEVGNIFGLSKERVRQLE 508
+V L R+ +L+ L PKE I+R+RFGI + GK +L EVG +F +++ER+RQ+E
Sbjct: 544 AAVLADL-REITTKVLSTLTPKEERILRMRFGIGKGGKDHTLEEVGKLFNVTRERIRQIE 602
Query: 509 SRALYRLKQSLGGKASYGY 527
++AL +L+ + G+
Sbjct: 603 AKALRKLRHPSRARKLRGF 621
>TIGR_CMR|CPS_4334 [details] [associations]
symbol:CPS_4334 "RNA polymerase sigma-70 factor"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393
RefSeq:YP_270983.1 ProteinModelPortal:Q47W39 SMR:Q47W39
STRING:Q47W39 GeneID:3522880 KEGG:cps:CPS_4334 PATRIC:21471513
BioCyc:CPSY167879:GI48-4343-MONOMER Uniprot:Q47W39
Length = 616
Score = 434 (157.8 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
Identities = 80/225 (35%), Positives = 146/225 (64%)
Query: 292 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 351
++++++ ANLRLV+ +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA WW
Sbjct: 377 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 436
Query: 352 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 411
+RQ I ++I +RTIR+P ++ ++K+ R +QE P E+LA R+ + +K+
Sbjct: 437 IRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEMGREPTPEELAERMVMPEDKI 496
Query: 412 ERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPK 471
+++ I + P+SM+ P+ D+D+ + D E+P S + ++ +L L +
Sbjct: 497 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDGSGELPVDSATSENLKGATHEVLAGLTAR 556
Query: 472 ERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 516
E ++R+RFGI+ +L EVG F +++ER+RQ+E++AL +L+
Sbjct: 557 EAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 601
Score = 45 (20.9 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 218 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKS 256
DP+R+++ T +LLT E + +I++ I+ E ++S
Sbjct: 96 DPVRMYMREMGTVELLTRKGEIVIAKRIEEGIK-EVQRS 133
>UNIPROTKB|Q9KUK1 [details] [associations]
symbol:VC_0517 "RNA polymerase sigma factor" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 KO:K03086
OMA:IEMNTDH TIGRFAMs:TIGR02393 ProtClustDB:PRK05658 PIR:F82312
RefSeq:NP_230168.1 ProteinModelPortal:Q9KUK1 SMR:Q9KUK1
DNASU:2615810 GeneID:2615810 KEGG:vch:VC0517 PATRIC:20080131
Uniprot:Q9KUK1
Length = 625
Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
Identities = 99/288 (34%), Positives = 179/288 (62%)
Query: 231 KLLTADEEFELIAQIQDLIR-LEKEKSKLQSQFGREPTL-IEWAKAIGLSCRDLKSELHS 288
K+L +D+ + +A++++ + + KLQ +E +L +E K I S R E +
Sbjct: 330 KVLASDKPY--VAKVREQEEEIRRSIQKLQ-MIEQETSLSVERIKDI--SRRMSIGEAKA 384
Query: 289 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 348
+ +E ++ ANLRLV+ +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 385 RRAKKE-MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 443
Query: 349 YWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 408
WW+RQ I ++I +RTIR+P ++ ++K+ R +QE P E+LA R+ +
Sbjct: 444 TWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPE 503
Query: 409 EKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLL 468
+K+ +++ I + P+SM+ P+ D+D+ + DT +E+P S ++ R++L L
Sbjct: 504 DKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAATRDVLAGL 563
Query: 469 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 516
P+E ++R+RFGI+ +L EVG F +++ER+RQ+E++AL +L+
Sbjct: 564 TPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 611
>TIGR_CMR|VC_0517 [details] [associations]
symbol:VC_0517 "RNA polymerase sigma factor RpoD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 KO:K03086
OMA:IEMNTDH TIGRFAMs:TIGR02393 ProtClustDB:PRK05658 PIR:F82312
RefSeq:NP_230168.1 ProteinModelPortal:Q9KUK1 SMR:Q9KUK1
DNASU:2615810 GeneID:2615810 KEGG:vch:VC0517 PATRIC:20080131
Uniprot:Q9KUK1
Length = 625
Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
Identities = 99/288 (34%), Positives = 179/288 (62%)
Query: 231 KLLTADEEFELIAQIQDLIR-LEKEKSKLQSQFGREPTL-IEWAKAIGLSCRDLKSELHS 288
K+L +D+ + +A++++ + + KLQ +E +L +E K I S R E +
Sbjct: 330 KVLASDKPY--VAKVREQEEEIRRSIQKLQ-MIEQETSLSVERIKDI--SRRMSIGEAKA 384
Query: 289 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 348
+ +E ++ ANLRLV+ +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 385 RRAKKE-MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 443
Query: 349 YWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 408
WW+RQ I ++I +RTIR+P ++ ++K+ R +QE P E+LA R+ +
Sbjct: 444 TWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPE 503
Query: 409 EKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLL 468
+K+ +++ I + P+SM+ P+ D+D+ + DT +E+P S ++ R++L L
Sbjct: 504 DKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAATRDVLAGL 563
Query: 469 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 516
P+E ++R+RFGI+ +L EVG F +++ER+RQ+E++AL +L+
Sbjct: 564 TPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 611
>TIGR_CMR|SO_3432 [details] [associations]
symbol:SO_3432 "RNA polymerase sigma factor RpoS"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE014299 GenomeReviews:AE014299_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 KO:K03087 TIGRFAMs:TIGR02394 OMA:KWLDELN
RefSeq:NP_718985.1 HSSP:Q9WX78 ProteinModelPortal:Q8EBR8 SMR:Q8EBR8
GeneID:1171107 KEGG:son:SO_3432 PATRIC:23526552
ProtClustDB:CLSK907167 Uniprot:Q8EBR8
Length = 326
Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
Identities = 103/293 (35%), Positives = 171/293 (58%)
Query: 233 LTAD--EEFELIAQIQDLIRLEKEKSKLQ-SQFGREPTLIEWAKAIGLSCRDLKSELHSG 289
+ AD +E L Q+QD ++ + ++L + G P L+ + + S + LK
Sbjct: 29 IAADLVQELGLEQQVQDDLQKNLDATQLYLGEIGFSP-LLSAEEEVYFSRKALKG----C 83
Query: 290 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 349
SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF++YA
Sbjct: 84 EKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 143
Query: 350 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 409
WW+RQTI +AI +RTIRLP ++ L+ L R Q+ +H P E++A ++ ++
Sbjct: 144 WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTARELAQKLDHEPTAEEIAEKLQVSSV 203
Query: 410 KLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLN 469
+ R++ + S+ P+ D D ++ AD PD VQ + + V L LN
Sbjct: 204 DVSRMLKLNEKITSVDVPLGGDNDKALLDVLADDDNVGPDYKVQDEDISNSVVKWLNELN 263
Query: 470 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGK 522
K+R ++ RFG+ +P +L +VG GL++ERVRQ++ AL RL+ LG +
Sbjct: 264 TKQREVLARRFGLLGYEPSTLEDVGAEIGLTRERVRQIQVEALKRLRDLLGAQ 316
>TIGR_CMR|CBU_1596 [details] [associations]
symbol:CBU_1596 "RNA polymerase sigma factor RpoD"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 EMBL:AF273254
RefSeq:NP_820579.1 HSSP:P00579 ProteinModelPortal:Q83BB6 SMR:Q83BB6
PRIDE:Q83BB6 GeneID:1209506 KEGG:cbu:CBU_1596 PATRIC:17931957
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH ProtClustDB:CLSK914891
BioCyc:CBUR227377:GJ7S-1575-MONOMER TIGRFAMs:TIGR02393
Uniprot:Q83BB6
Length = 698
Score = 459 (166.6 bits), Expect = 3.8e-43, P = 3.8e-43
Identities = 111/349 (31%), Positives = 195/349 (55%)
Query: 170 VKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASV-KKKLSEGFDRNDPLRLFLWGPE 228
+KQF+ R + + + ++ Q +Y KA +KK F N+ +L E
Sbjct: 346 IKQFN--RLTGQLRRMLRAARAQERLIMSYCVVKAKTPRKKFIASFPHNETNMKWL---E 400
Query: 229 TRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 288
K ++ L +++ R ++ ++L+ Q I+ K I R E S
Sbjct: 401 QYKNENKEQAKRLEKYSKEIYRAQRNLAQLEEQNNLN---IQEIKEINR--RVAIGEAKS 455
Query: 289 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 348
+ +E +I ANLRLV+ +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 456 RRAKKE-MIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 514
Query: 349 YWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 408
WW+RQ I ++I +RTIR+P ++ ++K+ R +QE E+L RR+ +
Sbjct: 515 TWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQILQETGIEATPEELGRRMDMPE 574
Query: 409 EKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIP-DISVQKQLMRQHVRNLLTL 467
EK+ +++ I + P+SM+ P+ D+D+ + D +E P D + LM + R +L+
Sbjct: 575 EKVRKVLKIAKEPISMETPIGEDEDSNLGDFIEDINMESPVDFATSAGLM-EATREILST 633
Query: 468 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 516
L P+E ++R+RFGI+ +L EVG F +++ER+RQ+E++AL +L+
Sbjct: 634 LTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 682
>TIGR_CMR|VC_0534 [details] [associations]
symbol:VC_0534 "RNA polymerase sigma factor RpoS"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
KO:K03087 TIGRFAMs:TIGR02394 EMBL:AF000945 PIR:A82312
RefSeq:NP_230185.1 ProteinModelPortal:O51804 SMR:O51804
DNASU:2615203 GeneID:2615203 KEGG:vch:VC0534 PATRIC:20080172
OMA:KWLDELN ProtClustDB:CLSK874000 Uniprot:O51804
Length = 335
Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
Identities = 104/312 (33%), Positives = 175/312 (56%)
Query: 212 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 271
E FD D L ET LT+DEE + + +R E + S +S + L E
Sbjct: 11 EEFDFEDEALEVL---ETDAELTSDEELVAVEGASEDVREEFDASA-KSLDATQMYLSEI 66
Query: 272 AKAIGLSCRD----LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSM 327
+ L+ + + L ++R+++I +NLRLVV ++++Y RG++L DL++EG++
Sbjct: 67 GFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNL 126
Query: 328 GLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLY 387
GL+++VEKF P+ G RF++YA WW+RQTI +A+ +RTIRLP ++ L+ L R
Sbjct: 127 GLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTAREL 186
Query: 388 IQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEI 447
Q +H P E++A + V+ + +++ + S+ P+ D D +I D+
Sbjct: 187 SQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNAD 246
Query: 448 PDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQL 507
P+ S Q +R+ + N L LNPK++ ++ RFG+ +P +L EVG L++ERVRQ+
Sbjct: 247 PEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQI 306
Query: 508 ESRALYRLKQSL 519
+ L RL++ L
Sbjct: 307 QVEGLRRLREIL 318
>TIGR_CMR|CPS_1079 [details] [associations]
symbol:CPS_1079 "RNA polymerase sigma factor RpoS"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:CP000083 GenomeReviews:CP000083_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03087 TIGRFAMs:TIGR02394
OMA:KWLDELN RefSeq:YP_267823.1 ProteinModelPortal:Q487E2 SMR:Q487E2
STRING:Q487E2 GeneID:3519032 KEGG:cps:CPS_1079 PATRIC:21465429
BioCyc:CPSY167879:GI48-1161-MONOMER Uniprot:Q487E2
Length = 296
Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 88/234 (37%), Positives = 143/234 (61%)
Query: 286 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 345
L SR+++I +NLRLVV +A++Y RG+ L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 50 LKGDEPSRKRMIESNLRLVVKIARRYNNRGLPLLDLIEEGNLGLIRAVEKFDPERGFRFS 109
Query: 346 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVG 405
+YA WW+RQTI +AI +RTIRLP ++ L+ L A R IQ+ +H P ED+A+ +
Sbjct: 110 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNIYLRASRELIQKLDHEPTAEDIAQHLD 169
Query: 406 ITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLL 465
V + +++ + S+ P + D ++ AD P+ +Q + M ++ + L
Sbjct: 170 RPVADVNKMLRLNERIASVDTPFAGESDKALLDVIADEKSTGPESDLQSEDMSNNIIHWL 229
Query: 466 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 519
LN K+R ++ RFG+ + +L VG GL++ERVRQ++ AL RL+ L
Sbjct: 230 NELNTKQREVLARRFGLLGYEASTLENVGREIGLTRERVRQIQVEALKRLRDIL 283
>UNIPROTKB|P13445 [details] [associations]
symbol:rpoS "RNA polymerase, sigma S (sigma 38) factor"
species:83333 "Escherichia coli K-12" [GO:0006950 "response to
stress" evidence=IDA] [GO:0001123 "transcription initiation from
bacterial-type RNA polymerase promoter" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016987 "sigma factor activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 HOGENOM:HOG000270273
EMBL:U29579 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 EMBL:L07869 EMBL:D17549 eggNOG:COG0568 KO:K03087
TIGRFAMs:TIGR02394 EMBL:X16400 EMBL:D13548 EMBL:Z14969 PIR:A65055
RefSeq:NP_417221.1 RefSeq:YP_490950.1 ProteinModelPortal:P13445
SMR:P13445 DIP:DIP-10777N IntAct:P13445 MINT:MINT-1228474
PRIDE:P13445 EnsemblBacteria:EBESCT00000000907
EnsemblBacteria:EBESCT00000000908 EnsemblBacteria:EBESCT00000000909
EnsemblBacteria:EBESCT00000017671 GeneID:12933280 GeneID:947210
KEGG:ecj:Y75_p2679 KEGG:eco:b2741 PATRIC:32120886 EchoBASE:EB0505
EcoGene:EG10510 OMA:AARQVMI ProtClustDB:PRK05657
BioCyc:EcoCyc:RPOS-MONOMER BioCyc:ECOL316407:JW5437-MONOMER
BioCyc:MetaCyc:RPOS-MONOMER Genevestigator:P13445 Uniprot:P13445
Length = 330
Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 97/282 (34%), Positives = 165/282 (58%)
Query: 238 EFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLI 297
E EL++Q L+ + L + G P L+ + + + R L+ ++ +SR ++I
Sbjct: 42 EEELLSQGATQRVLDATQLYL-GEIGYSP-LLTAEEEVYFARRALRGDV----ASRRRMI 95
Query: 298 NANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIR 357
+NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF++YA WW+RQTI
Sbjct: 96 ESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE 155
Query: 358 KAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 417
+AI +RTIRLP +I L+ L R + +H P E++A ++ V+ + R++ +
Sbjct: 156 RAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRL 215
Query: 418 TRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVR 477
S+ P+ D + +I AD P+ + Q M+Q + L LN K+R ++
Sbjct: 216 NERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLA 275
Query: 478 LRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 519
RFG+ + +L +VG GL++ERVRQ++ L RL++ L
Sbjct: 276 RRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREIL 317
>TIGR_CMR|CBU_1669 [details] [associations]
symbol:CBU_1669 "RNA polymerase sigma factor RpoS"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE016828 GenomeReviews:AE016828_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 HSSP:P00579 EMBL:AF244357
RefSeq:NP_820651.1 ProteinModelPortal:Q9KI19 SMR:Q9KI19
PRIDE:Q9KI19 GeneID:1209580 KEGG:cbu:CBU_1669 PATRIC:17932081
KO:K03087 OMA:HISAQAT ProtClustDB:CLSK914949
BioCyc:CBUR227377:GJ7S-1641-MONOMER TIGRFAMs:TIGR02394
Uniprot:Q9KI19
Length = 352
Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 110/342 (32%), Positives = 184/342 (53%)
Query: 186 RKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQI 245
+K+ KP + + + K S KK + D +F +T+K T E+ EL A
Sbjct: 15 KKIKKP--SKRKIKKTAKKSRPKKPIKASDHG---LIFA---KTKKETTEKEDAEL-ANA 65
Query: 246 QDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLS-CRDLKSEL------HSGN-SSREKLI 297
+ K K + +++ +PT I + + +G + K EL H G+ +R+++I
Sbjct: 66 K-----AKTKKRRETR-SSDPTQI-YLRELGFQPLLNAKEELKIARRVHKGDPKARKQMI 118
Query: 298 NANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIR 357
ANLRLVV +A+ Y RG+ DL++EG++GL+ +VEKF P+ G RF++YA WW+RQTI
Sbjct: 119 EANLRLVVKIARHYVNRGLPFLDLIEEGNLGLLTAVEKFDPERGFRFSTYATWWIRQTIE 178
Query: 358 KAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 417
+AI SRT+RLP ++ L+ L + QE +H ED+A + V+++ R++ +
Sbjct: 179 RAIMNQSRTVRLPIHVIKELNVYLRTAKKLTQEVDHEATPEDVAHLIDKPVQEIRRIMDL 238
Query: 418 TRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVR 477
S+ P+ D + + AD P +Q ++ H+ L L+ + R +V
Sbjct: 239 APSATSIDVPISEDGQKSLVDTLADDNNIDPARLIQNVDLQDHIERWLAQLDERHREVVI 298
Query: 478 LRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 519
LRFG+ + + +L VG GL++ERVRQ++ AL +L+ L
Sbjct: 299 LRFGLHENEKGTLEAVGKAVGLTRERVRQIQIDALQQLRHIL 340
>TAIR|locus:2084420 [details] [associations]
symbol:SIGC "AT3G53920" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS;IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0019685 "photosynthesis, dark reaction"
evidence=NAS] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IDA;TAS] [GO:0071482 "cellular response to light stimulus"
evidence=IEP] [GO:0001053 "plastid sigma factor activity"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0009507 EMBL:CP002686 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AL132960 GO:GO:0003899 GO:GO:0071482 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 HSSP:Q9EZJ8
GO:GO:0001053 InterPro:IPR016262 PIRSF:PIRSF000767 EMBL:D89994
EMBL:AB019944 EMBL:AB004822 EMBL:AF015544 EMBL:BT030362
EMBL:AY128331 IPI:IPI00530485 PIR:T45932 RefSeq:NP_190960.1
UniGene:At.21270 ProteinModelPortal:O24621 SMR:O24621 STRING:O24621
PRIDE:O24621 EnsemblPlants:AT3G53920.1 GeneID:824559
KEGG:ath:AT3G53920 GeneFarm:26 TAIR:At3g53920 InParanoid:O24621
KO:K03093 OMA:WIRKSMS PhylomeDB:O24621 ProtClustDB:CLSN2685061
Genevestigator:O24621 Uniprot:O24621
Length = 571
Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
Identities = 105/364 (28%), Positives = 203/364 (55%)
Query: 158 SLTSSLGYPLEEVKQF-SQPRFLERRSK-KRKVSKPQVTNHETYNSRKASVKKKLSEGFD 215
S+TS L E V +Q F+ R K K+K + VT N ++S+ L ++
Sbjct: 198 SITSCLSDTTELVDTTPNQQVFVSSRRKVKKKARRSSVTAE---NGDQSSLPIGLRTTWN 254
Query: 216 RNDPLRLFLWGPETRKLLT--ADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAK 273
D R+ P+ RK + E E+ ++ + +E+ +++L+ + G+ +L WA
Sbjct: 255 NIDVPRVRR-PPKYRKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAA 313
Query: 274 AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSV 333
A G++ + L LH G R++L+ + LV+ +A+ Y+G GI+ DL+Q G +G+++
Sbjct: 314 AAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGA 373
Query: 334 EKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKR-LYIQEGN 392
E+F G +F++Y +W+R+++ + +H+R + +P +I ++ + +A++ L G
Sbjct: 374 ERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGI 433
Query: 393 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISV 452
E++A+ G +V+K+ ++ S+ + V T F E T DT +E P+ +V
Sbjct: 434 KYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAV 493
Query: 453 QKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 512
+Q R+ + +LL L P+E+ ++ LR+G++D +PKSL E+G + +SKE +R++E RA+
Sbjct: 494 MRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAM 553
Query: 513 YRLK 516
+L+
Sbjct: 554 AKLR 557
>UNIPROTKB|O48655 [details] [associations]
symbol:rsigA "Plastid RNA polymerase sigma factor"
species:39947 "Oryza sativa Japonica Group" [GO:0009416 "response
to light stimulus" evidence=IEP] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 GO:GO:0009507 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009416
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HSSP:Q9EZJ8 EMBL:AB005290 ProteinModelPortal:O48655 STRING:O48655
KEGG:dosa:Os08t0163400-01 Gramene:O48655 Uniprot:O48655
Length = 519
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 98/305 (32%), Positives = 173/305 (56%)
Query: 221 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 280
R++L G +++LLT + L +I+D I L++++SKL+ + G EP+ + A ++ +S
Sbjct: 205 RIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPP 264
Query: 281 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 340
+L+S +H +RE L +NLRLV+ +A++Y G+ L DL+Q G +GL++ +EKF
Sbjct: 265 ELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASR 324
Query: 341 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDL 400
G R ++Y YWW+RQ + +A+ ++S+T RLP ++ L + AK +++ +P E++
Sbjct: 325 GFRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAIRGAK-YELEDQGIAPTIENI 383
Query: 401 ARRVGITVEKLERLIFITRMPLSMQQPVWADQD----TTFQEITADTGV-EIPDISVQKQ 455
A + I+ +K+ LS+ Q + + T D V P ++
Sbjct: 384 AGSLNISEKKVLNATEAVNKVLSLDQQAFPSLNGLPGETLHSYIEDQNVANDPWHGFEEW 443
Query: 456 LMRQHVRNLL-TLLNPKERCIVRLRFGIEDGKP-KSLSEVGNIFGLSKERVRQLESRALY 513
+++ V LL + LN +ER I+RL GI GK + ++ FGLS+ERVRQ+ A+
Sbjct: 444 YLKEEVNKLLNSTLNERERDIIRLYHGI--GKQCHTWEDISRQFGLSRERVRQVGLIAME 501
Query: 514 RLKQS 518
+LK +
Sbjct: 502 KLKHA 506
>TAIR|locus:2173249 [details] [associations]
symbol:SIG4 "AT5G13730" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=TAS] [GO:0016987 "sigma factor activity" evidence=ISS]
[GO:0071482 "cellular response to light stimulus" evidence=IEP]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:2001141 "regulation of RNA biosynthetic process" evidence=IMP]
[GO:0000023 "maltose metabolic process" evidence=RCA] [GO:0006098
"pentose-phosphate shunt" evidence=RCA] [GO:0016556 "mRNA
modification" evidence=RCA] [GO:0019252 "starch biosynthetic
process" evidence=RCA] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 EMBL:CP002688
GO:GO:0009507 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AB006704 GO:GO:0071482
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HSSP:Q9EZJ8 GO:GO:0001053 EMBL:AF101075 EMBL:AB021119 EMBL:AY059907
EMBL:AY114689 IPI:IPI00548771 PIR:T51715 RefSeq:NP_196877.1
UniGene:At.43777 UniGene:At.49018 ProteinModelPortal:Q9ZSL6
SMR:Q9ZSL6 STRING:Q9ZSL6 PRIDE:Q9ZSL6 EnsemblPlants:AT5G13730.1
GeneID:831218 KEGG:ath:AT5G13730 GeneFarm:27 TAIR:At5g13730
InParanoid:Q9ZSL6 OMA:PENMVKR PhylomeDB:Q9ZSL6
ProtClustDB:CLSN2687040 Genevestigator:Q9ZSL6 Uniprot:Q9ZSL6
Length = 419
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 89/291 (30%), Positives = 151/291 (51%)
Query: 226 GPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSE 285
G L+ EE +L +++ +LE + ++ E + A G R
Sbjct: 116 GASRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEEN---EMVSVLLASGRGKKKRSANEI 172
Query: 286 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 345
L +REK+ RLVV +A YQG+G++L DL+QEGS+GL++ E+F P G + +
Sbjct: 173 LCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLS 232
Query: 346 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVG 405
+Y YWW++Q I +AI SR ++LP +++ L +KV EA + ++ P E++A +
Sbjct: 233 TYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLN 292
Query: 406 ITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLL 465
+ V + + +R P+S+ + + T QEI P+ V+++ M+ + LL
Sbjct: 293 LNVSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLL 352
Query: 466 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 516
L +E ++ L FG+ P S E+G LS+ERVRQ+ AL +L+
Sbjct: 353 GSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLR 403
>TAIR|locus:2010871 [details] [associations]
symbol:SIGA "AT1G64860" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS;IDA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0071482 "cellular response to light stimulus"
evidence=IEP] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IDA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:2001141 "regulation of RNA biosynthetic process" evidence=IMP]
[GO:0071461 "cellular response to redox state" evidence=IDA]
[GO:0080005 "photosystem stoichiometry adjustment" evidence=IDA]
[GO:0006833 "water transport" evidence=RCA] [GO:0009651 "response
to salt stress" evidence=RCA] [GO:0009750 "response to fructose
stimulus" evidence=RCA] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 EMBL:CP002684
GO:GO:0009507 GO:GO:0006355 GO:GO:0003677 GO:GO:0071461
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AC006193 GO:GO:0071482 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0080005 eggNOG:COG0568 KO:K03086
EMBL:D89993 EMBL:AB019942 EMBL:AB004821 EMBL:AF015542 EMBL:Y14252
EMBL:AF024590 EMBL:AF325036 EMBL:AY062526 EMBL:AY093306
EMBL:AK316773 EMBL:Y14567 IPI:IPI00521776 IPI:IPI00991957
PIR:H96671 PIR:T52642 RefSeq:NP_001185314.1 RefSeq:NP_176666.1
UniGene:At.25556 HSSP:Q9EZJ8 ProteinModelPortal:O24629 SMR:O24629
IntAct:O24629 STRING:O24629 PRIDE:O24629 EnsemblPlants:AT1G64860.1
GeneID:842794 KEGG:ath:AT1G64860 GeneFarm:25 TAIR:At1g64860
InParanoid:O24629 OMA:DHKSRLK ProtClustDB:CLSN2679344
Genevestigator:O24629 GO:GO:0001053 Uniprot:O24629
Length = 502
Score = 360 (131.8 bits), Expect = 2.2e-32, P = 2.2e-32
Identities = 90/305 (29%), Positives = 169/305 (55%)
Query: 220 LRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC 279
+R ++ G + +L+ E L +I+ +RL+ KS+L+ + G EP+ + A ++ +S
Sbjct: 187 VRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISR 246
Query: 280 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQ 339
+L++ L + +REKL +N+RLV+ +A++Y G + DL+Q G +GL++ +EKF
Sbjct: 247 AELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSS 306
Query: 340 AGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKED 399
G R ++Y YWW+RQ + +A+ +SRT+RLP +++ L + AK L +QE +P +
Sbjct: 307 KGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAK-LRLQEKGITPSIDR 365
Query: 400 LARRVGITVEKLERLIFITRMPLSMQQPVWADQD----TTFQEITADTGVEI-PDISVQK 454
+A + ++ +K+ S+ + + + T ADT +E P
Sbjct: 366 IAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDD 425
Query: 455 QLMRQHVRNLLTL-LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 513
+++ V L++ L +E+ I+RL +G+ D + + ++ GLS+ERVRQ+ AL
Sbjct: 426 LALKEEVSKLISATLGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALE 484
Query: 514 RLKQS 518
+LK +
Sbjct: 485 KLKHA 489
>TIGR_CMR|NSE_0312 [details] [associations]
symbol:NSE_0312 "RNA polymerase sigma factor RpoD"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 RefSeq:YP_506202.1
ProteinModelPortal:Q2GE94 SMR:Q2GE94 STRING:Q2GE94 GeneID:3931706
KEGG:nse:NSE_0312 PATRIC:22680715 OMA:HIHETAN
ProtClustDB:CLSK2527840 BioCyc:NSEN222891:GHFU-338-MONOMER
Uniprot:Q2GE94
Length = 620
Score = 348 (127.6 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 73/213 (34%), Positives = 131/213 (61%)
Query: 273 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 332
++I R + + L + N+++ +++ ANLRLV+ +AK+Y RG+ DL+QEG++GLMK+
Sbjct: 342 RSISFLTRKVATHLDNANAAKHRMVEANLRLVISIAKKYTNRGMPFPDLIQEGNIGLMKA 401
Query: 333 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKR-LYIQEG 391
V+KF + G +F++YA WW RQ I +AI +R P +I+ +KV+ +R LY G
Sbjct: 402 VDKFDHRRGHKFSTYATWWCRQAITRAIADCGSIVRKPVHIHETANKVMRTRRRLYNLNG 461
Query: 392 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT-TFQEITAD-TGVEIPD 449
P E++A + I+ +K+++ + + + P+S++ PV D ++ +F + D V D
Sbjct: 462 RE-PTVEEIANLLKISPDKVKKSLKVNQDPISLESPVGDDSNSGSFGDFIEDKNAVSQVD 520
Query: 450 ISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGI 482
+ + K L R+ + L +L+P+E I+R RFG+
Sbjct: 521 VVLSKNL-RKVLDEALAMLSPREEKILRYRFGL 552
Score = 52 (23.4 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 217 NDPLRLFLWGPETRKLLTADEEFELIAQI 245
+DP+RL+L KLL+ D+E E+ I
Sbjct: 91 DDPVRLYLREMSYVKLLSRDDEVEIAKAI 119
>UNIPROTKB|Q84JN3 [details] [associations]
symbol:SIG5 "Os05g0586600 protein" species:39947 "Oryza
sativa Japonica Group" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IDA] [GO:0009536 "plastid" evidence=IDA]
[GO:0016987 "sigma factor activity" evidence=IDA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0009536 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 EMBL:AP008211 GO:GO:0016987
GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HSSP:Q9EZJ8 KO:K03093 OMA:NKLIKHN ProtClustDB:CLSN2686315
EMBL:AB096011 EMBL:AB096071 RefSeq:NP_001056463.1 UniGene:Os.57417
EnsemblPlants:LOC_Os05g50930.1 GeneID:4339759 KEGG:osa:4339759
Uniprot:Q84JN3
Length = 500
Score = 350 (128.3 bits), Expect = 1.0e-30, P = 1.0e-30
Identities = 84/289 (29%), Positives = 157/289 (54%)
Query: 232 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 291
+LT+ + L +Q + + + K L+++ EP + A+A+ +S ++ L G +
Sbjct: 203 VLTSAQSIRLFRIMQPMKAIMEMKENLENEVQSEPNDAQLAEAMNMSVLQMRRHLEVGRA 262
Query: 292 SREKLINANLRLVVHVAKQY---QGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 348
+R KLI NLRLV++ +Y D+ Q G+ GL+ ++++F+P+ G R ++YA
Sbjct: 263 ARNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGANGLITAIDRFEPKRGFRISTYA 322
Query: 349 YWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 408
+W+R +I +AI + T R P + + ++ A+ E +P +E++ ++VG++
Sbjct: 323 LFWIRHSIVRAITLSNFT-RFPFAMESERQEIHRAREELAFELGRAPTEEEVMKKVGLSP 381
Query: 409 EKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLL 468
+ ++ +TR S+ Q+ E+T D + + D S L+R + +LL L
Sbjct: 382 ARYRDVVRMTRPTYSLHARNRVTQEELINEVTDDDAIGV-DTSSHNTLLRLAIDDLLDSL 440
Query: 469 NPKERCIVRLRFGIEDGKPK-SLSEVGNIFGLSKERVRQLESRALYRLK 516
PKE ++R RFG+ DG+ K +LSE+ +S+E VR+ E +AL +LK
Sbjct: 441 KPKESVVIRQRFGL-DGRGKRTLSEIAGNLNISREMVRKYELKALMKLK 488
>TAIR|locus:2167413 [details] [associations]
symbol:SIGE "AT5G24120" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=ISS;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] [GO:0071483 "cellular response to blue light"
evidence=IEP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0001053 "plastid sigma factor
activity" evidence=IMP] [GO:0010207 "photosystem II assembly"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0010114 "response to red light" evidence=IEP]
[GO:0010218 "response to far red light" evidence=IEP] [GO:0009637
"response to blue light" evidence=IGI] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0010264
"myo-inositol hexakisphosphate biosynthetic process" evidence=RCA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0005739 EMBL:CP002688 GO:GO:0009507
GO:GO:0045893 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010218 GO:GO:0010114
GO:GO:0009658 EMBL:AB010696 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0010207 eggNOG:COG0568 HSSP:Q9EZJ8
GO:GO:0001053 KO:K03093 EMBL:AB021120 EMBL:Y18550 EMBL:AK316888
EMBL:AY045660 EMBL:AK221445 IPI:IPI00519217 PIR:T51328
RefSeq:NP_197800.1 UniGene:At.5425 ProteinModelPortal:Q9ZNX9
SMR:Q9ZNX9 STRING:Q9ZNX9 PRIDE:Q9ZNX9 EnsemblPlants:AT5G24120.1
GeneID:832477 KEGG:ath:AT5G24120 GeneFarm:28 TAIR:At5g24120
InParanoid:Q9ZNX9 OMA:NKLIKHN PhylomeDB:Q9ZNX9
ProtClustDB:CLSN2686315 Genevestigator:Q9ZNX9 GO:GO:0071483
Uniprot:Q9ZNX9
Length = 517
Score = 331 (121.6 bits), Expect = 6.2e-28, P = 6.2e-28
Identities = 97/349 (27%), Positives = 181/349 (51%)
Query: 179 LERR-SKKRKVS-KPQVTNHETYNSRKASVKKKLSE---GFDRNDPLRLFLWGP-ETRKL 232
L++R + KR V KP V + + +++ ++K+ + ++ + W + +
Sbjct: 160 LDKRIALKRNVQEKPVVASVDKKVTKRQQEEEKIERLVRDYSASNDIVSLDWKKMKIPPV 219
Query: 233 LTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSS 292
L++ E L +Q + L + K LQ GREP E A I ++ ++K ++ G ++
Sbjct: 220 LSSTEHAWLFKLMQPMKALLEVKDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIGRAA 279
Query: 293 REKLINANLRLVVHVAKQYQGR---GISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 349
R KLI NLRLV+ V +Y G DL Q G GL+ ++++F+P+ R ++Y
Sbjct: 280 RNKLIKHNLRLVLFVMNKYFHEFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGL 339
Query: 350 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAK-RLYIQEGNHSPDKEDLARRVGITV 408
+W+R I +++ + T R+P + ++ ++ +AK L+ + G P ++++ R+ IT
Sbjct: 340 FWIRHAIIRSMTTSNFT-RVPFGLESVRVEIYKAKTELWFEMGR-PPTEDEVVERLKITP 397
Query: 409 EKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLL 468
E+ ++ + LS+ Q+ IT GV + S Q L+R + ++L L
Sbjct: 398 ERYREVLRAAKPVLSLNSKHSVTQEEFINGITDVDGVGANN-SRQPALLRLALDDVLDSL 456
Query: 469 NPKERCIVRLRFGIEDGK-PKSLSEVGNIFGLSKERVRQLESRALYRLK 516
PKE ++R R+G+ DGK ++L E+ +S+E VR+ E +AL +LK
Sbjct: 457 KPKESLVIRQRYGL-DGKGDRTLGEIAGNLNISREMVRKHEVKALMKLK 504
>TIGR_CMR|GSU_0655 [details] [associations]
symbol:GSU_0655 "RNA polymerase sigma-32 factor"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012759 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HOGENOM:HOG000270269 KO:K03089
TIGRFAMs:TIGR02392 RefSeq:NP_951712.1 ProteinModelPortal:Q74FF4
GeneID:2685542 KEGG:gsu:GSU0655 PATRIC:22024067 OMA:DIVSARW
ProtClustDB:CLSK827976 BioCyc:GSUL243231:GH27-665-MONOMER
Uniprot:Q74FF4
Length = 284
Score = 272 (100.8 bits), Expect = 4.3e-23, P = 4.3e-23
Identities = 78/231 (33%), Positives = 116/231 (50%)
Query: 296 LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 355
LI +NLR VV +A +Y+ G+ + DL+QEG++GLM +V KF P G R SYA WW+R
Sbjct: 49 LITSNLRFVVKIAAEYRSYGLKMLDLIQEGNVGLMMAVRKFNPYKGIRLISYAVWWIRAY 108
Query: 356 IRKAIFQHSRTIRL--PENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLER 413
I+ I +++ + L K+ +AK I+ + D E A + V++ E
Sbjct: 109 IQNHIISAWSLLKIGTTQAQKKLFFKLNQAKNA-IKGLTGTDDIE--ATATSLHVKESEV 165
Query: 414 LIFITRM--PLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQ---LMRQHVRNLLTLL 468
L RM + + T E AD D + Q L++QH+ L L
Sbjct: 166 LEMDQRMRGDFYLDAEIKNGDGLTILETLADERQNQEDTLAELQESELLKQHIAGALGKL 225
Query: 469 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 519
N KER IV R + P +L E+ + F +S+ERVRQ+E AL ++K L
Sbjct: 226 NEKERFIVEQR--VTADTPLTLQEIADRFSISRERVRQIEEAALRKIKSYL 274
>UNIPROTKB|P50511 [details] [associations]
symbol:rpoH "RNA polymerase sigma-32 factor" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008270
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0009408 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 EMBL:U44432 PIR:D82357 RefSeq:NP_229808.1
ProteinModelPortal:P50511 DNASU:2614865 GeneID:2614865
KEGG:vch:VC0150 PATRIC:20079338 OMA:LDQRERY Uniprot:P50511
Length = 286
Score = 261 (96.9 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 77/262 (29%), Positives = 138/262 (52%)
Query: 280 RDLKSELH-SGNSSREK-LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 337
R+L LH G+ K LI ++LR VVHVA+ Y G G+ + DL+QEG++GLMK+V++F
Sbjct: 35 RELAERLHYKGDIDAAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFN 94
Query: 338 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLP-----ENIYTLLSKVLEAKRL-YIQEG 391
P+ G R S+A W++ I + + ++ R +++ ++ L K KRL + G
Sbjct: 95 PEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKIATTKAQRKLFFNLRK--SKKRLGWFNNG 152
Query: 392 NHSPDKEDLARRVGIT---VEKLERLIFITRMPLSMQQPVWADQDTTFQEITA------D 442
+ E +AR +G+ V ++E + M A+ D TA D
Sbjct: 153 ----EVETVARELGVEPAEVREMESRLAAQDAAFEMS----AEDDENGMAYTAPVLYLED 204
Query: 443 TGVEIPDISVQKQLMRQHVRNLLTL----LNPKERCIVRLRFGIEDGKPKSLSEVGNIFG 498
++ D +++ + H L++ L+ + + IVR R+ ++D +L ++ ++G
Sbjct: 205 KHSDLAD-NLEAENWEAHTTQRLSMALASLDERSQHIVRARW-LDDDNKTTLQDLAEMYG 262
Query: 499 LSKERVRQLESRALYRLKQSLG 520
+S ER+RQLE A+ +LK+++G
Sbjct: 263 VSAERIRQLEKNAMRKLKEAVG 284
>TIGR_CMR|VC_0150 [details] [associations]
symbol:VC_0150 "RNA polymerase sigma-32 factor" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012759
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0008270 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
KO:K03089 ProtClustDB:PRK06596 TIGRFAMs:TIGR02392 EMBL:U44432
PIR:D82357 RefSeq:NP_229808.1 ProteinModelPortal:P50511
DNASU:2614865 GeneID:2614865 KEGG:vch:VC0150 PATRIC:20079338
OMA:LDQRERY Uniprot:P50511
Length = 286
Score = 261 (96.9 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 77/262 (29%), Positives = 138/262 (52%)
Query: 280 RDLKSELH-SGNSSREK-LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 337
R+L LH G+ K LI ++LR VVHVA+ Y G G+ + DL+QEG++GLMK+V++F
Sbjct: 35 RELAERLHYKGDIDAAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFN 94
Query: 338 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLP-----ENIYTLLSKVLEAKRL-YIQEG 391
P+ G R S+A W++ I + + ++ R +++ ++ L K KRL + G
Sbjct: 95 PEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKIATTKAQRKLFFNLRK--SKKRLGWFNNG 152
Query: 392 NHSPDKEDLARRVGIT---VEKLERLIFITRMPLSMQQPVWADQDTTFQEITA------D 442
+ E +AR +G+ V ++E + M A+ D TA D
Sbjct: 153 ----EVETVARELGVEPAEVREMESRLAAQDAAFEMS----AEDDENGMAYTAPVLYLED 204
Query: 443 TGVEIPDISVQKQLMRQHVRNLLTL----LNPKERCIVRLRFGIEDGKPKSLSEVGNIFG 498
++ D +++ + H L++ L+ + + IVR R+ ++D +L ++ ++G
Sbjct: 205 KHSDLAD-NLEAENWEAHTTQRLSMALASLDERSQHIVRARW-LDDDNKTTLQDLAEMYG 262
Query: 499 LSKERVRQLESRALYRLKQSLG 520
+S ER+RQLE A+ +LK+++G
Sbjct: 263 VSAERIRQLEKNAMRKLKEAVG 284
>TIGR_CMR|BA_4042 [details] [associations]
symbol:BA_4042 "RNA polymerase sigma-G factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014212 InterPro:IPR014284 InterPro:IPR014322
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03091 HSSP:P00579 HOGENOM:HOG000270270 TIGRFAMs:TIGR02980
OMA:QISDERN ProtClustDB:PRK08215 TIGRFAMs:TIGR02850
RefSeq:NP_846282.1 RefSeq:YP_020684.2 ProteinModelPortal:Q81WD6
DNASU:1086511 EnsemblBacteria:EBBACT00000008607
EnsemblBacteria:EBBACT00000015378 GeneID:1086511 GeneID:2816830
KEGG:ban:BA_4042 KEGG:bar:GBAA_4042 PATRIC:18785676
BioCyc:BANT261594:GJ7F-3930-MONOMER Uniprot:Q81WD6
Length = 259
Score = 257 (95.5 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 74/248 (29%), Positives = 131/248 (52%)
Query: 280 RDLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 338
R L E+ SG S+REKL+N NLRLV+ V +++ RG + DL Q G +GLMKS++ F
Sbjct: 25 RKLFREMQSGEISAREKLVNGNLRLVLSVIQRFNNRGEYVDDLFQVGCIGLMKSIDNFDL 84
Query: 339 QAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKE 398
+F++YA + IR+ + + + IR+ ++ + K L+ + I E + P
Sbjct: 85 GQNVKFSTYAVPMIIGEIRRYL-RDNNPIRVSRSLRDIAYKALQVREKLIAENSKEPTAM 143
Query: 399 DLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMR 458
D+A+ + +T E++ + + P+S+ +P++ D D + +S +KQ
Sbjct: 144 DIAKVLEVTHEEIVFALDAIQDPVSLFEPIYNDG--------GDPIFVMDQLSDEKQKDE 195
Query: 459 QHVRNL-----LTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 513
Q V L + LN +E+ I+R RF GK + EV G+S+ +V +LE A+
Sbjct: 196 QWVEELALKEGMKRLNDREKMIIRKRFF--QGKTQM--EVAEEIGISQAQVSRLEKSAIK 251
Query: 514 RLKQSLGG 521
++ +++ G
Sbjct: 252 QMNKTIQG 259
>TIGR_CMR|SPO_0406 [details] [associations]
symbol:SPO_0406 "RNA polymerase sigma-32 factor"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0009408 "response to
heat" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_165669.1
ProteinModelPortal:Q5LWD6 GeneID:3196326 KEGG:sil:SPO0406
PATRIC:23374073 OMA:GREWIEA ProtClustDB:PRK07500 Uniprot:Q5LWD6
Length = 292
Score = 252 (93.8 bits), Expect = 6.8e-21, P = 6.8e-21
Identities = 67/252 (26%), Positives = 136/252 (53%)
Query: 287 HSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAS 346
H ++ +LI A +RL + +A +++ G ++DL+QE +GLMK+ +KF P G RF++
Sbjct: 36 HRDEAALHRLITAYMRLAISMAAKFKRYGAPMNDLIQEAGLGLMKAADKFDPDRGVRFST 95
Query: 347 YAYWWVRQTIRKAIFQHSRTIRL-----PENIYTLLSKV-LEAKRLYIQEGNHSPDKEDL 400
YA WW++ +I+ + ++ +R ++++ + +V +R +G + D+ L
Sbjct: 96 YAVWWIKASIQDYVMRNWSMVRTGSTSSQKSLFFNMRRVQARLEREAATDGL-ALDRHQL 154
Query: 401 ----ARRVGITVEKLERLIF-ITRMPLSMQQPVWADQD-TTFQEITADTGVEIPDISVQK 454
A +G+ + +E + ++ S+ +D++ + E D + ++ +
Sbjct: 155 HQMIASEIGVPLRDVEMMEGRLSGSDFSLNATQASDEEGREWIEALEDESEQAAELVAHR 214
Query: 455 ---QLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 511
+ +R + + LN +ER IVR R + D +P++L +G+ GLSKERVRQLE+ A
Sbjct: 215 HDTEQLRDWLIEAMQALNERERFIVRER-KLRD-EPRTLESLGDELGLSKERVRQLEAAA 272
Query: 512 LYRLKQSLGGKA 523
++++SL ++
Sbjct: 273 FAKMRKSLEARS 284
>UNIPROTKB|P0AGB3 [details] [associations]
symbol:rpoH species:83333 "Escherichia coli K-12"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0016987 "sigma
factor activity" evidence=IEA;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;IMP] [GO:0009408
"response to heat" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006950 "response
to stress" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0006355
EMBL:U00039 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0008270 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
EMBL:J05516 EMBL:M20668 EMBL:K02177 PIR:H65142 RefSeq:NP_417918.1
RefSeq:YP_491973.1 ProteinModelPortal:P0AGB3 SMR:P0AGB3
DIP:DIP-46203N IntAct:P0AGB3 PRIDE:P0AGB3 DNASU:947970
EnsemblBacteria:EBESCT00000004588 EnsemblBacteria:EBESCT00000004589
EnsemblBacteria:EBESCT00000004590 EnsemblBacteria:EBESCT00000004591
EnsemblBacteria:EBESCT00000004592 EnsemblBacteria:EBESCT00000004593
EnsemblBacteria:EBESCT00000018203 GeneID:12933503 GeneID:947970
KEGG:ecj:Y75_p3717 KEGG:eco:b3461 PATRIC:32122366 EchoBASE:EB0890
EcoGene:EG10897 eggNOG:COG0568 HOGENOM:HOG000270269 KO:K03089
OMA:LNNDEVH ProtClustDB:PRK06596 BioCyc:EcoCyc:RPOH-MONOMER
BioCyc:ECOL316407:JW3426-MONOMER BioCyc:MetaCyc:RPOH-MONOMER
Genevestigator:P0AGB3 TIGRFAMs:TIGR02392 Uniprot:P0AGB3
Length = 284
Score = 249 (92.7 bits), Expect = 1.5e-20, P = 1.5e-20
Identities = 74/253 (29%), Positives = 131/253 (51%)
Query: 280 RDLKSELH-SGNSSREK-LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 337
R L +LH G+ K LI ++LR VVH+A+ Y G G+ DL+QEG++GLMK+V +F
Sbjct: 35 RALAEKLHYHGDLEAAKTLILSHLRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFN 94
Query: 338 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 397
P+ G R S+A W++ I + + ++ R +++ ++ + G + D+
Sbjct: 95 PEVGVRLVSFAVHWIKAEIHEYVLRNWRIVKVATT-KAQRKLFFNLRKTKQRLGWFNQDE 153
Query: 398 -EDLARRVGITVEKLERLIFITRMPLS-MQQPVWADQDTTFQEITA-----DTGVEIPDI 450
E +AR +G+T + + + +RM M + +D D+ Q + D D
Sbjct: 154 VEMVARELGVTSKDVREME--SRMAAQDMTFDLSSDDDSDSQPMAPVLYLQDKSSNFAD- 210
Query: 451 SVQKQLMRQHVRNLLTL----LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQ 506
++ + N LT L+ + + I+R R+ ED K +L E+ + +G+S ERVRQ
Sbjct: 211 GIEDDNWEEQAANRLTDAMQGLDERSQDIIRARWLDEDNK-STLQELADRYGVSAERVRQ 269
Query: 507 LESRALYRLKQSL 519
LE A+ +L+ ++
Sbjct: 270 LEKNAMKKLRAAI 282
>TIGR_CMR|APH_0759 [details] [associations]
symbol:APH_0759 "RNA polymerase sigma-32 factor"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG0568 HOGENOM:HOG000270269 KO:K03089
ProtClustDB:CLSK749586 RefSeq:YP_505338.1 ProteinModelPortal:Q2GJW3
STRING:Q2GJW3 GeneID:3930206 KEGG:aph:APH_0759 PATRIC:20950212
OMA:ADTHRET BioCyc:APHA212042:GHPM-775-MONOMER Uniprot:Q2GJW3
Length = 289
Score = 248 (92.4 bits), Expect = 1.9e-20, P = 1.9e-20
Identities = 62/231 (26%), Positives = 128/231 (55%)
Query: 295 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 354
KL+ ++LRLVV VA ++ G+ L +L+ EG++GLM++V+KF P+ G R ++YA WW++
Sbjct: 50 KLVTSHLRLVVKVAMGFRSYGLPLMELIMEGNIGLMQAVKKFNPELGFRLSTYAIWWIKA 109
Query: 355 TIRKAIFQHSRTIRL-----PENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 409
+I+ I + +R+ + ++ L K+ + + L D +A G + +
Sbjct: 110 SIKDYILRSWSCMRIGTTQAQKKLFFSLRKI-KRRILGCSASASQSDIRAIAEECGTSEK 168
Query: 410 KLERLI-FITRMPLSMQQPVWADQDTTFQEIT--ADTGVEIPDISVQKQLMR-QHVRNLL 465
++E + F + +S+ V + T Q++ + E+ +S ++ +M+ Q V+ L
Sbjct: 169 EVESMDRFFSNRDISLSDKVCCESGTELQDLIPCSSPNQEVMYLSHEESVMKDQMVKEAL 228
Query: 466 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 516
+ L+ + R I R +++ P +L + +G+SKER+RQ+E ++ +++
Sbjct: 229 STLDERHRDIFSRR-KLKE-HPDTLETLSEEYGVSKERIRQIELQSFSKVR 277
>TIGR_CMR|CPS_0161 [details] [associations]
symbol:CPS_0161 "RNA polymerase sigma-32 factor"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 RefSeq:YP_266929.1 ProteinModelPortal:Q48AI4
STRING:Q48AI4 DNASU:3520829 GeneID:3520829 KEGG:cps:CPS_0161
PATRIC:21463737 OMA:EIAYAER BioCyc:CPSY167879:GI48-264-MONOMER
Uniprot:Q48AI4
Length = 285
Score = 241 (89.9 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 77/259 (29%), Positives = 140/259 (54%)
Query: 281 DLKSELHSGNS--SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 338
DL + L++ N + ++LI ++LR V+HVAK Y G G+ DL+QEG++GLMK+V++F P
Sbjct: 35 DLATRLYNENDLQAAQELIMSHLRFVIHVAKGYSGYGLPHADLVQEGNVGLMKAVKRFNP 94
Query: 339 QAGCRFASYAYWWVRQTIRKAIFQHSRTIRLP-----ENIYTLLSKVLEAKRLYIQEGNH 393
+ G R S+A W++ I + + ++ R +++ ++ L K KRL G
Sbjct: 95 EVGVRLVSFAVHWIKAEIHEFVLKNWRIVKVATTKAQRKLFFNLRK--NKKRL----GWF 148
Query: 394 SPDKED-LARRVGITVEKLERLIFITRMPLSMQQ-PVWADQD-----TTF------QEIT 440
S ++ + +A +G+T + + + +RM Q + D D ++F Q+
Sbjct: 149 STEEVNTVAENLGVTTKDVMEME--SRMSSHDQAFELSKDDDDNLGSSSFSPAQYLQDKQ 206
Query: 441 ADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLS 500
+D VE+ + + ++ L+TL + + + I++ R+ ED +L E+ N + +S
Sbjct: 207 SDLAVEVENDNWDNHANKRLSTALVTL-DERSQDIIKTRWLTED--KTTLQELANKYQIS 263
Query: 501 KERVRQLESRALYRLKQSL 519
ERVRQLE AL +LK ++
Sbjct: 264 AERVRQLEKNALSKLKNTM 282
>TIGR_CMR|ECH_0655 [details] [associations]
symbol:ECH_0655 "RNA polymerase sigma-32 factor"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_507464.1
ProteinModelPortal:Q2GGG9 STRING:Q2GGG9 GeneID:3928045
KEGG:ech:ECH_0655 PATRIC:20576762 OMA:HHLVTSH
ProtClustDB:CLSK749586 BioCyc:ECHA205920:GJNR-657-MONOMER
Uniprot:Q2GGG9
Length = 297
Score = 228 (85.3 bits), Expect = 2.9e-18, P = 2.9e-18
Identities = 72/243 (29%), Positives = 135/243 (55%)
Query: 295 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 354
+L+ ++LRLVV VA ++ + L +L+ EG++GLM++V+KF P G R ++YA WW++
Sbjct: 50 RLVTSHLRLVVKVALSFKNYELPLIELIMEGNIGLMQAVKKFNPTLGFRLSTYAIWWIKA 109
Query: 355 TIRKAIFQHSRTIRL-----PENIYTLLSKVLEAKRLYIQEGNHSPDKEDL---ARRVGI 406
I+ I + I++ ++ L K+ K+L+ + NH+ KED+ A +
Sbjct: 110 FIKDYILKSWSCIKIGTTQAQRKLFFSLRKI--KKKLF--KYNHNITKEDIKLIANKCST 165
Query: 407 TVEKLERL--IFITRMPLSMQQPVWADQDTT---FQEITA-------DTGVEIPDISVQK 454
+ +++E++ F+ R S+ + V+++ + QEI DT + +++++K
Sbjct: 166 SEQEVEQMNRYFLYR-DRSLNELVFSNDNQNGVELQEIIKCDTPNQEDTYLLNEELNIKK 224
Query: 455 QLMRQHVRNLLTLLNPKERCI-VRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 513
L+ Q L+ LN + R I +R R IE+ P +L ++ + +SKERVRQ+E A
Sbjct: 225 ALISQ----ALSTLNERYRDIFIRRRL-IEE--PDTLDKLSQEYNISKERVRQIEMHAFT 277
Query: 514 RLK 516
++K
Sbjct: 278 KVK 280
>TIGR_CMR|CHY_1959 [details] [associations]
symbol:CHY_1959 "RNA polymerase sigma-F factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191 KO:K03091
HOGENOM:HOG000270270 TIGRFAMs:TIGR02980 TIGRFAMs:TIGR02885
RefSeq:YP_360778.1 ProteinModelPortal:Q3AAQ6 STRING:Q3AAQ6
GeneID:3726621 KEGG:chy:CHY_1959 PATRIC:21277005 OMA:PRERYIL
ProtClustDB:CLSK941224 BioCyc:CHYD246194:GJCN-1958-MONOMER
Uniprot:Q3AAQ6
Length = 257
Score = 216 (81.1 bits), Expect = 5.9e-17, P = 5.9e-17
Identities = 65/243 (26%), Positives = 126/243 (51%)
Query: 280 RDLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 338
++L + G+ ++REKLIN NL+LV V +++ RG + DL Q G++GL+K+++KF
Sbjct: 22 KELIEKAQKGDVAAREKLINCNLKLVFKVVERFLHRGYEVEDLFQIGTIGLIKAIDKFDL 81
Query: 339 QAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKE 398
+ +F++YA + IR+ + + + IR+ + L K+L+ K + P
Sbjct: 82 KQQVKFSTYAVPMIVGEIRRFL-RDDQAIRISRSTKELGVKILKEKEALTVKLGREPTIA 140
Query: 399 DLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMR 458
+L +G + E + + + S+ + V D + +I ++Q +
Sbjct: 141 ELEETLGYSREAIVEALEAGQSLASLFETVHQDDGDPIYLLD-----QIKQEGDEEQTLL 195
Query: 459 QHV--RNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 516
+++ + +L+ L P+ER I+ RF K K+ E+ G+S+ +V +LE +AL +LK
Sbjct: 196 ENISIKEVLSKLEPRERYILINRFF----KEKTQMEIARTLGISQVQVSRLERQALLKLK 251
Query: 517 QSL 519
+ L
Sbjct: 252 RYL 254
>TIGR_CMR|SO_4583 [details] [associations]
symbol:SO_4583 "RNA polymerase sigma-32 factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HOGENOM:HOG000270269 KO:K03089
ProtClustDB:PRK06596 TIGRFAMs:TIGR02392 HSSP:Q9EZJ8 OMA:EIAYAER
RefSeq:NP_720099.1 ProteinModelPortal:Q8E8S8 GeneID:1172168
KEGG:son:SO_4583 PATRIC:23528833 Uniprot:Q8E8S8
Length = 285
Score = 216 (81.1 bits), Expect = 5.9e-17, P = 5.9e-17
Identities = 70/238 (29%), Positives = 127/238 (53%)
Query: 294 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 353
++LI ++LR VVHVAK Y G G+ DL+QEG++GLMK+V++F P G R S+A W++
Sbjct: 54 KQLIMSHLRFVVHVAKGYAGYGLPQADLIQEGNIGLMKAVKRFDPDVGVRLVSFAVHWIK 113
Query: 354 QTIRKAIFQHSRTIRLPENIYT--LLSKVLEAK-RLYIQEGNHSPDKEDL-ARRVGITVE 409
I + + ++ R +++ L + +AK RL G S D+ + A +G++
Sbjct: 114 AEIHEYVLKNWRIVKVATTKAQRKLFFNIRKAKTRL----GWFSDDEVTMVAENLGVS-- 167
Query: 410 KLERLIFITRMPLSMQQPVW---ADQDTT--------FQEITADTGVEIPDISVQKQLMR 458
K + +RM + Q P + +D D ++ ++D I + + +
Sbjct: 168 KADVTEMESRM--AAQDPAFDLSSDNDDEHDFAPVHYLEDHSSDLAENIENDNWESNAQG 225
Query: 459 QHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 516
+ + + TL + + + I+R R+ ++D K +L E+ + +S ER+RQLE A+ +LK
Sbjct: 226 RLLSAIKTL-DERSQHILRARW-LDDDKT-TLQELAETYQVSAERIRQLEKNAMNKLK 280
>TIGR_CMR|CBU_1909 [details] [associations]
symbol:CBU_1909 "RNA polymerase sigma-32 factor"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012759 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 GenomeReviews:AE016828_GR
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 ProtClustDB:PRK06596 TIGRFAMs:TIGR02392
HSSP:Q9EZJ8 EMBL:AF120928 ProteinModelPortal:Q9LAQ0 PRIDE:Q9LAQ0
PATRIC:17932555 BioCyc:CBUR227377:GJ7S-1884-MONOMER Uniprot:Q9LAQ0
Length = 288
Score = 193 (73.0 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 47/130 (36%), Positives = 73/130 (56%)
Query: 246 QDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC----RDLKSELHSGNS--SREKLINA 299
Q L R+E E+S G + I W I L DL ++ N + KL+ +
Sbjct: 3 QFLTRVE-ERSLSIGSIG---SYISWVNRIPLLSAEEEHDLANKFRQSNDLEAARKLVLS 58
Query: 300 NLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKA 359
+LR VV +A+ Y G G+S DL+QEG++GLMK+V++F PQ G R S+A W+R I +
Sbjct: 59 HLRFVVRIARGYSGYGLSQADLIQEGNIGLMKAVKRFDPQVGVRLVSFAVHWIRAEIHEF 118
Query: 360 IFQHSRTIRL 369
I ++ R +++
Sbjct: 119 ILKNWRIVKI 128
Score = 69 (29.3 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 17/63 (26%), Positives = 37/63 (58%)
Query: 458 RQH-VRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 516
++H + N + ++ + R I+ R+ E K +L E+ + +S ER+RQLE A+ +++
Sbjct: 225 QEHRLHNAMQSMDDRSRDILYQRWLSE--KKSTLHELAAQYAVSAERIRQLEKNAMQKIR 282
Query: 517 QSL 519
++
Sbjct: 283 TAM 285
>TIGR_CMR|CHY_2055 [details] [associations]
symbol:CHY_2055 "RNA polymerase sigma-G factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014212 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191 KO:K03091
HOGENOM:HOG000270270 TIGRFAMs:TIGR02980 RefSeq:YP_360874.1
ProteinModelPortal:Q3AAG0 STRING:Q3AAG0 GeneID:3726360
KEGG:chy:CHY_2055 PATRIC:21277191 OMA:QISDERN ProtClustDB:PRK08215
BioCyc:CHYD246194:GJCN-2054-MONOMER TIGRFAMs:TIGR02850
Uniprot:Q3AAG0
Length = 257
Score = 212 (79.7 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 60/227 (26%), Positives = 121/227 (53%)
Query: 292 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 351
+R+KLI+ NLRLV+ + +++ RG + DL Q G +GL+K+++ F + +F++YA
Sbjct: 38 ARQKLISGNLRLVLSIIQRFTNRGEYVDDLFQVGCIGLIKAIDNFDLEQNVKFSTYAVPM 97
Query: 352 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 411
+ IR+ + + + IR+ ++ + K L+ + + + P ++A+ + + E++
Sbjct: 98 IIGEIRRYL-RDNNPIRVSRSLRDVAYKALQVRDNLVGRFSREPTVSEIAQELKVPQEEV 156
Query: 412 ERLIFITRMPLSMQQPVWADQ-DTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNP 470
+ + P+S+ +P++ D D F D ++ + L ++ L LN
Sbjct: 157 VFALDAIQDPVSLFEPIYQDGGDPIF---VMDQ-IKDEKNTDHNWLQGIALKEALERLNE 212
Query: 471 KERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517
+ER I++LRF +GK + EV G+S+ +V +LE AL L++
Sbjct: 213 RERLILKLRF--YEGKTQM--EVAEEIGISQAQVSRLEKAALNHLRK 255
>TIGR_CMR|NSE_0341 [details] [associations]
symbol:NSE_0341 "RNA polymerase sigma-32 factor"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_506230.1 STRING:Q2GE66
GeneID:3931426 KEGG:nse:NSE_0341 PATRIC:22680769 OMA:AINEYVI
ProtClustDB:CLSK2528041 BioCyc:NSEN222891:GHFU-366-MONOMER
Uniprot:Q2GE66
Length = 288
Score = 212 (79.7 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 63/242 (26%), Positives = 122/242 (50%)
Query: 286 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 345
+H S+ ++L+ A LRLVV V +++ G L DL EG++GLMK+++ F P G A
Sbjct: 40 VHRDISAAQRLVEAYLRLVVKVTVRFRNYGFPLMDLASEGNIGLMKAIKNFNPTLGHGIA 99
Query: 346 SYAYWWVRQTIRKAIFQHSRTIRL-----PENIYTLLSKVLEAKRLYIQEGNHSPDK--E 398
+YA WW++ I + + + +++ ++ L K+ + + + N + E
Sbjct: 100 TYAIWWIKAAINEYVIRSWSMVKIGTTAAQRRLFFNLRKLKNSGSVAGLDENQVVKRISE 159
Query: 399 DLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITA--DTGVEIPDISVQKQL 456
LA VE++ER++ + L+MQ + D + ++ + E + Q++
Sbjct: 160 ILAVSKN-DVEEMERILNARDVSLNMQ--LGEDDSSEVHDLVPFPEANQEAVLLETQERQ 216
Query: 457 MR-QHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRL 515
M+ Q + + L + + I R P++L E+G F +S+ERVRQ+ +RA+ ++
Sbjct: 217 MKSQLLYEAVEALEARHKEIFVARS--LSAVPRTLKELGEKFSISQERVRQIHARAMKKV 274
Query: 516 KQ 517
+
Sbjct: 275 TE 276
>TIGR_CMR|SPO_1409 [details] [associations]
symbol:SPO_1409 "RNA polymerase sigma-32 factor"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0009408 "response to
heat" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012759
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00716 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 GO:GO:0008270 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 RefSeq:YP_166650.1 ProteinModelPortal:Q5LTK5
GeneID:3195142 KEGG:sil:SPO1409 PATRIC:23376133 OMA:HESQEEM
Uniprot:Q5LTK5
Length = 298
Score = 215 (80.7 bits), Expect = 4.5e-16, P = 4.5e-16
Identities = 61/242 (25%), Positives = 132/242 (54%)
Query: 292 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 351
S K++ ++LRL +A Y+G G+ +++ E ++GLM++V++F P+ G R A+YA WW
Sbjct: 49 SAHKMVTSHLRLAAKIAMGYRGYGLPQAEVISEANVGLMQAVKRFDPEKGFRLATYAMWW 108
Query: 352 VRQTIRKAIFQHSRTIRL-----PENIYTLLSKVLEAKRLYIQEGNHSPDK-EDLARRVG 405
+R I++ I + ++L + ++ L K +AK ++EG+ P+ +A +G
Sbjct: 109 IRAAIQEYILRSWSLVKLGTTSAQKKLFFNLRKA-KAKIGALEEGDLRPENVARIAHDLG 167
Query: 406 ITVEKLERLIFITRMP---LSMQQPVWADQDTT--FQEITADTGVE-IPDISVQKQL--M 457
++ + + + RM S+ V ++ + T +Q+ D + D + +L
Sbjct: 168 VSEDDV--ISMNRRMSGGDASLNATVGSEGEGTMQWQDWLEDEDADQAADYEARDELEAR 225
Query: 458 RQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517
R+ + + L +LN +E+ ++ R ++ + +L ++ + +S+ER+RQ+E RA +L++
Sbjct: 226 RELLASALDVLNEREKDVLTQRRLLD--QTVTLEDLSAQYNVSRERIRQIEVRAFEKLQK 283
Query: 518 SL 519
+
Sbjct: 284 RM 285
>UNIPROTKB|O32728 [details] [associations]
symbol:O32728 "RNA polymerase sigma factor" species:1422
"Geobacillus stearothermophilus" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
TIGRFAMs:TIGR02980 EMBL:L47360 PDB:1L0O PDBsum:1L0O
ProteinModelPortal:O32728 SMR:O32728 IntAct:O32728
EvolutionaryTrace:O32728 TIGRFAMs:TIGR02885 Uniprot:O32728
Length = 250
Score = 206 (77.6 bits), Expect = 7.1e-16, P = 7.1e-16
Identities = 64/234 (27%), Positives = 121/234 (51%)
Query: 292 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 351
+R+++I N+RLV V +++ RG DL Q G +GL+KSV+KF +F++YA
Sbjct: 31 ARDEIIEKNMRLVWSVVQRFLNRGYEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYAVPM 90
Query: 352 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 411
+ I++ + + T+++ ++ + +K+ +AK + SP ++A +GI+ E +
Sbjct: 91 IIGEIQRFL-RDDGTVKVSRSLKEMGNKIRKAKDELSKTRGRSPTITEIADHLGISPEDV 149
Query: 412 ERLIFITRMPLSMQQPVWA-DQD--TTFQEIT-ADTGVEIPDISVQKQLMRQHVRNLLTL 467
R+P S+ + V+ D D T +I AD I+++K +
Sbjct: 150 VLAQEAVRLPTSIHETVYENDGDPITLLDQIADADEASWFDKIALKKAIEE--------- 200
Query: 468 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 521
L+ +ER IV LR+ + ++ SEV + G+S+ +V +LE + L +K + G
Sbjct: 201 LDERERLIVYLRYY----RDRTQSEVASRLGISQVQVSRLEKKILQHIKDKMDG 250
>TIGR_CMR|CHY_2056 [details] [associations]
symbol:CHY_2056 "RNA polymerase sigma-E factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014200 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 ProtClustDB:PRK08301
TIGRFAMs:TIGR02835 RefSeq:YP_360875.1 ProteinModelPortal:Q3AAF9
STRING:Q3AAF9 GeneID:3727807 KEGG:chy:CHY_2056 PATRIC:21277193
OMA:ERQETTI BioCyc:CHYD246194:GJCN-2055-MONOMER Uniprot:Q3AAF9
Length = 237
Score = 135 (52.6 bits), Expect = 8.6e-16, Sum P(2) = 8.6e-16
Identities = 27/79 (34%), Positives = 52/79 (65%)
Query: 291 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 350
+++ LI NLRLVV++A++++ G+++ DL+ G++GL+K+V F P+ + A+YA
Sbjct: 55 AAKSTLIERNLRLVVYIARKFENTGVNIEDLVSIGTIGLIKAVNTFNPEKKIKLATYASR 114
Query: 351 WVRQTIRKAIFQHSRTIRL 369
+ I + ++S+ IRL
Sbjct: 115 CIENEILMYLRRNSK-IRL 132
Score = 127 (49.8 bits), Expect = 8.6e-16, Sum P(2) = 8.6e-16
Identities = 28/104 (26%), Positives = 59/104 (56%)
Query: 419 RMPLSMQQPV---WADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCI 475
R+ +S +P+ W + ++ G I + ++ ++ ++ ++ L+ LN +ER I
Sbjct: 131 RLEVSFDEPLNVDWDGNELLLSDVLGTEGDIIYKV-MEDEVEKKLLKVALSKLNQRERKI 189
Query: 476 VRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 519
+ LRFG+ DG ++ EV ++ G+S+ + +LE + L RLK+ +
Sbjct: 190 MELRFGLTDGYERTQKEVADLLGISQSYISRLEKKILKRLKKEI 233
Score = 38 (18.4 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 44 EDKTSQATSDSRNIETEAFFVEEKNS 69
E K AT SR IE E +NS
Sbjct: 103 EKKIKLATYASRCIENEILMYLRRNS 128
>TIGR_CMR|BA_4043 [details] [associations]
symbol:BA_4043 "RNA polymerase sigma-29 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014200 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 RefSeq:NP_846283.1
RefSeq:YP_020685.1 RefSeq:YP_030006.1 ProteinModelPortal:P62177
DNASU:1086623 EnsemblBacteria:EBBACT00000012093
EnsemblBacteria:EBBACT00000017203 EnsemblBacteria:EBBACT00000022798
GeneID:1086623 GeneID:2816772 GeneID:2850034 KEGG:ban:BA_4043
KEGG:bar:GBAA_4043 KEGG:bat:BAS3755 OMA:LIMELRF
ProtClustDB:PRK08301 BioCyc:BANT260799:GJAJ-3813-MONOMER
BioCyc:BANT261594:GJ7F-3931-MONOMER TIGRFAMs:TIGR02835
Uniprot:P62177
Length = 239
Score = 140 (54.3 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 31/85 (36%), Positives = 53/85 (62%)
Query: 282 LKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 340
L ++L G+ ++R LI NLRLVV++A++++ GI++ DL+ G++GL+K+V F P+
Sbjct: 47 LLNKLPKGDQAARSLLIERNLRLVVYIARKFENTGINIEDLISIGTIGLIKAVNTFNPEK 106
Query: 341 GCRFASYAYWWVRQTIRKAIFQHSR 365
+ A+YA + I I H R
Sbjct: 107 KIKLATYA----SRCIENEILMHLR 127
Score = 106 (42.4 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 26/102 (25%), Positives = 53/102 (51%)
Query: 419 RMPLSMQQPV---WADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCI 475
R +S +P+ W + ++ T +I ++ + R + L LN +E+ I
Sbjct: 133 RSEVSFDEPLNIDWDGNELLLSDVLG-TDDDIITKDLEATVDRHLLMKALHQLNDREKQI 191
Query: 476 VRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517
+ LRFG+ G+ K+ +V ++ G+S+ + +LE R + RL++
Sbjct: 192 MELRFGLAGGEEKTQKDVADMLGISQSYISRLEKRIIKRLRK 233
>UNIPROTKB|P0AEM6 [details] [associations]
symbol:fliA "RNA polymerase, sigma 28 (sigma F) factor"
species:83333 "Escherichia coli K-12" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016987
"sigma factor activity" evidence=IEA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR012845 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0016987 GO:GO:0003899 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 EMBL:L36677 EMBL:U18539
PIR:JC4346 RefSeq:NP_416432.3 RefSeq:YP_490179.1
ProteinModelPortal:P0AEM6 SMR:P0AEM6 DIP:DIP-47959N IntAct:P0AEM6
MINT:MINT-1250982 PRIDE:P0AEM6 EnsemblBacteria:EBESCT00000000857
EnsemblBacteria:EBESCT00000000858 EnsemblBacteria:EBESCT00000015311
GeneID:12930662 GeneID:948824 KEGG:ecj:Y75_p1893 KEGG:eco:b1922
PATRIC:32119179 EchoBASE:EB1330 EcoGene:EG11355 eggNOG:COG1191
HOGENOM:HOG000270271 KO:K02405 OMA:TYAITRI ProtClustDB:PRK06986
BioCyc:EcoCyc:EG11355-MONOMER BioCyc:ECOL316407:JW1907-MONOMER
BioCyc:MetaCyc:EG11355-MONOMER Genevestigator:P0AEM6
TIGRFAMs:TIGR02479 Uniprot:P0AEM6
Length = 239
Score = 184 (69.8 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 62/237 (26%), Positives = 109/237 (45%)
Query: 289 GNSSREKLINANLRLVVHVAKQYQGR---GISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 345
G + L + LV H A + Q R + L DLLQ G +GL+ +VE++ G F
Sbjct: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68
Query: 346 SYAYWWVRQTIRKAIFQHSRTIR-LPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRV 404
+YA Q IR A+ R+ +P ++ +V +A QE + + ++A R+
Sbjct: 69 TYAV----QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124
Query: 405 GITVEKLERLIFITRMPLSMQQPVWADQD-TTFQEITADTGVEIPDISVQKQLMRQHVRN 463
GI + +++ T W ++ + + +T D E P + +RQ V
Sbjct: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVME 184
Query: 464 LLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 520
+ L +E+ ++ L + E +L E+G + + + RV QL S+A+ RL+ LG
Sbjct: 185 AIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237
>TIGR_CMR|BA_4294 [details] [associations]
symbol:BA_4294 "RNA polymerase sigma-F factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03091 HOGENOM:HOG000270270 TIGRFAMs:TIGR02980
TIGRFAMs:TIGR02885 RefSeq:NP_846527.1 RefSeq:YP_020937.1
RefSeq:YP_030233.1 HSSP:O32728 ProteinModelPortal:Q81MF5 SMR:Q81MF5
DNASU:1088482 EnsemblBacteria:EBBACT00000012570
EnsemblBacteria:EBBACT00000017412 EnsemblBacteria:EBBACT00000022371
GeneID:1088482 GeneID:2818699 GeneID:2850307 KEGG:ban:BA_4294
KEGG:bar:GBAA_4294 KEGG:bat:BAS3983 OMA:IRRSQEG
ProtClustDB:PRK05572 BioCyc:BANT260799:GJAJ-4040-MONOMER
BioCyc:BANT261594:GJ7F-4178-MONOMER Uniprot:Q81MF5
Length = 252
Score = 184 (69.8 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 55/228 (24%), Positives = 117/228 (51%)
Query: 292 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 351
+R+ ++ +N+RLV V +++ RG DL Q G +GL+KSV+KF +F++YA
Sbjct: 33 ARDTIVQSNMRLVWSVVQRFLNRGYEPDDLFQIGCIGLLKSVDKFDLSFDVKFSTYAVPM 92
Query: 352 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 411
+ I++ + + ++++ ++ +K+ + + +E +P ++A + +T E++
Sbjct: 93 IIGEIQRFL-RDDGSVKVSRSLKETGNKIRKMRDELSKEFGRAPTINEVAEALELTPEEV 151
Query: 412 ERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPK 471
+R P S+ + V+ + + +I D S K + ++ + L+ +
Sbjct: 152 VLAQEASRAPSSIHETVYENDGDPITILD-----QIADQSETKWFDKIALKEAIRELDER 206
Query: 472 ERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 519
ER IV LR+ K ++ SEV G+S+ +V +LE + L ++K +
Sbjct: 207 ERLIVYLRYY----KDQTQSEVAERIGISQVQVSRLEKKILKQMKDRI 250
>UNIPROTKB|Q7D5S2 [details] [associations]
symbol:sigF "Alternative RNA polymerase sigma factor SigF"
species:1773 "Mycobacterium tuberculosis" [GO:0005515 "protein
binding" evidence=IPI] [GO:0006629 "lipid metabolic process"
evidence=IMP] [GO:0006979 "response to oxidative stress"
evidence=IMP] [GO:0006995 "cellular response to nitrogen
starvation" evidence=IEP] [GO:0009409 "response to cold"
evidence=IMP] [GO:0016987 "sigma factor activity" evidence=IGI]
[GO:0034059 "response to anoxia" evidence=IMP] [GO:0043175 "RNA
polymerase core enzyme binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0046677 "response to antibiotic" evidence=IMP] [GO:0052572
"response to host immune response" evidence=IEP] [GO:0070417
"cellular response to cold" evidence=IEP] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0045893 GO:GO:0006979 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003677
GO:GO:0006629 GO:GO:0046677 GO:GO:0052572 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0070417
GO:GO:0006995 GO:GO:0034059 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 GO:GO:0043175
HOGENOM:HOG000270270 KO:K03090 TIGRFAMs:TIGR02980 EMBL:AL123456
RefSeq:NP_217803.1 RefSeq:NP_337914.1 RefSeq:YP_006516763.1
SMR:Q7D5S2 IntAct:Q7D5S2 EnsemblBacteria:EBMYCT00000001724
EnsemblBacteria:EBMYCT00000068996 GeneID:13318109 GeneID:888727
GeneID:922492 KEGG:mtc:MT3385 KEGG:mtu:Rv3286c KEGG:mtv:RVBD_3286c
PATRIC:18129196 TubercuList:Rv3286c OMA:EMDRDEV
ProtClustDB:PRK07122 Uniprot:Q7D5S2
Length = 261
Score = 180 (68.4 bits), Expect = 8.1e-12, P = 8.1e-12
Identities = 60/229 (26%), Positives = 116/229 (50%)
Query: 293 REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWV 352
R+K++ L L H+A++++GRG DL+Q +GL+ + +F + G F S+A +
Sbjct: 40 RDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTI 99
Query: 353 RQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGIT-VEKL 411
+R+ +S ++++P + L ++ A Q +P +LA +G+ E +
Sbjct: 100 MGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVI 159
Query: 412 ERLIFITRM-PLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNP 470
E L+ + LS+ +D D + IT DT ++ D + + R+ +R LL L
Sbjct: 160 EGLLAGSSYHTLSIDSGGGSDDDA--RAIT-DTLGDV-DAGLDQIENREVLRPLLEALPE 215
Query: 471 KERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 519
+ER ++ LRF D ++ ++ G+S+ V +L +++L RL+ L
Sbjct: 216 RERTVLVLRFF--DSMTQT--QIAERVGISQMHVSRLLAKSLARLRDQL 260
>TIGR_CMR|GSU_3053 [details] [associations]
symbol:GSU_3053 "RNA polymerase sigma factor for flagellar
operon" species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012845 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00716 GO:GO:0019861
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0016987 GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 HOGENOM:HOG000270271 KO:K02405 OMA:TYAITRI
TIGRFAMs:TIGR02479 RefSeq:NP_954095.1 ProteinModelPortal:Q748E9
GeneID:2686906 KEGG:gsu:GSU3053 PATRIC:22028957
ProtClustDB:CLSK829077 BioCyc:GSUL243231:GH27-2993-MONOMER
Uniprot:Q748E9
Length = 250
Score = 166 (63.5 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 61/236 (25%), Positives = 110/236 (46%)
Query: 292 SREKLINANLRLVV----HVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASY 347
+R++LI +L LV +A Q + DL+ +GL+ + E+F P G +F ++
Sbjct: 19 TRDELIVNHLPLVKFLVGRIASQLPPH-LDQEDLMSAAIIGLITAAERFDPTRGVQFKTF 77
Query: 348 AYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGIT 407
A +R TI + R + + L K E L Q G + P E++A + ++
Sbjct: 78 AEQRIRGTIIDELRSQDWLTRSLRDKFKKLEK--EFVLLEHQLGRN-PTSEEVATALKMS 134
Query: 408 VEKLERLIF-ITRMPLSMQQPVWADQDTT---FQEITADTGVEIPDISVQKQLMRQHVRN 463
V++ +++ I + W D D + +I ADT +E P + + M +
Sbjct: 135 VDEYYQMLEEIHLLSFVSLDESWEDDDGSPFGLLDILADTSIENPQSQLMARQMLDSLTE 194
Query: 464 LLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 519
+ L KER ++ L + E +L E+G + LS+ R+ QL S+A+ RL+ +
Sbjct: 195 SIESLPEKERLVITLYYYEE----LNLKEIGAVLELSESRISQLHSQAIVRLRAKM 246
>TIGR_CMR|CHY_1013 [details] [associations]
symbol:CHY_1013 "RNA polymerase sigma factor for flagellar
operon" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0030092
"regulation of flagellum assembly" evidence=ISS] InterPro:IPR000943
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR012845
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 GO:GO:0019861
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG1191 HOGENOM:HOG000270271 KO:K02405 TIGRFAMs:TIGR02479
RefSeq:YP_359860.1 ProteinModelPortal:Q3ADC4 STRING:Q3ADC4
GeneID:3727796 KEGG:chy:CHY_1013 PATRIC:21275159 OMA:RTEDELW
BioCyc:CHYD246194:GJCN-1012-MONOMER Uniprot:Q3ADC4
Length = 254
Score = 159 (61.0 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 56/210 (26%), Positives = 105/210 (50%)
Query: 316 ISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIR-LPENIY 374
+S D+ G +GL+++VE + G +F SYA IR AI R LP +++
Sbjct: 50 LSREDIEGYGIIGLIEAVETYDQNRGVKFESYA----SLKIRAAIIDELRKQNFLPRSVW 105
Query: 375 TLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE---KLERLIFITRMPLSMQQPVWAD 431
+ KV ++ + + E +A ++G++V K++ LI + + LS+ + + D
Sbjct: 106 DKIKKVTTSEEMLLNALGEEVPVEKVAEQLGVSVSDVLKIKTLIAL-KNHLSLDEII--D 162
Query: 432 QDTTFQEIT--ADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKS 489
+ + AD P+ K++ + +R L L+ +ER I++L F +E+ S
Sbjct: 163 PEGSVDRFAGLADDEKYSPENKFLKRVEIEELREALKRLSDRERLILQL-FYVEE---LS 218
Query: 490 LSEVGNIFGLSKERVRQLESRALYRLKQSL 519
L E+ + +S RV Q+ S+AL +L++ L
Sbjct: 219 LKEIAAVLDISTSRVSQIASKALGKLRKLL 248
>TIGR_CMR|CHY_0617 [details] [associations]
symbol:CHY_0617 "RNA polymerase sigma-K factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014209 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 ProtClustDB:PRK05803
TIGRFAMs:TIGR02846 RefSeq:YP_359473.1 ProteinModelPortal:Q3AEG1
STRING:Q3AEG1 GeneID:3728237 KEGG:chy:CHY_0617 PATRIC:21274371
OMA:LERETEC BioCyc:CHYD246194:GJCN-617-MONOMER Uniprot:Q3AEG1
Length = 234
Score = 149 (57.5 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 36/130 (27%), Positives = 66/130 (50%)
Query: 286 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 345
L +R+ L NLRLV H+ K+++G G + DL+ G++GL+K+++ F+P G + A
Sbjct: 44 LQGDREARDVLAERNLRLVAHIVKKFEGTGEATEDLISIGTIGLIKAIDTFRPDKGTKLA 103
Query: 346 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVG 405
+YA + + I H R + +L + + +EGN + L R
Sbjct: 104 TYA----AKCVENEILMHLRATKKNRGEVSLYDPIG-----FDKEGNEITLLDILGTRGD 154
Query: 406 ITVEKLERLI 415
I +E++ R++
Sbjct: 155 IVLEQVVRML 164
>UNIPROTKB|O83707 [details] [associations]
symbol:TP_0709 "RNA polymerase sigma factor" species:243276
"Treponema pallidum subsp. pallidum str. Nichols" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR012845 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
GO:GO:0003899 EMBL:AE000520 GenomeReviews:AE000520_GR
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 KO:K02405
OMA:TYAITRI TIGRFAMs:TIGR02479 HSSP:Q9EZJ8 PIR:A71290
RefSeq:NP_219146.1 ProteinModelPortal:O83707 IntAct:O83707
MINT:MINT-6480056 GeneID:2610969 KEGG:tpa:TP0709 PATRIC:20531509
ProtClustDB:PRK06288 Uniprot:O83707
Length = 262
Score = 138 (53.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 57/238 (23%), Positives = 113/238 (47%)
Query: 293 REKLINANLRLVVHVAKQYQ-GR--GISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 349
RE + LV +VA + G+ + DL+ G GL +++K+ P+ RF +YA
Sbjct: 27 REYFVVQYAPLVKYVASKIAVGKPGNVEFDDLVSYGIFGLFDAIDKYDPEKNIRFNTYAV 86
Query: 350 WWVRQTIRKAIFQHSRTIR-LPENIYTLLSKVLEA-KRLYIQEGNHSPDKEDLARRVGIT 407
R IR AIF R+I +P ++ ++ EA L + G + D E +A + I
Sbjct: 87 --TR--IRGAIFDELRSIDWVPRSVRQQTRQIEEAIADLEARLGRXATDTE-IACALNIE 141
Query: 408 VEKLERLIFITR--MPLSMQQPVWA----DQDTTFQEITADTGVEIPDISVQKQLMRQHV 461
+E+ +L+ +S+ + D + I A + PD+ V+++ +++ +
Sbjct: 142 LEEYHQLLLKVSGTSVISLADSKFGGDERDHVSVGDSIEAPASLN-PDVIVEREEIKRII 200
Query: 462 RNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 519
+ L+ +E+ ++ L + E +L E+G + +++ R+ Q+ + A +LK L
Sbjct: 201 AEAIRELSQREQQVLILYYYEE----MTLKEIGKVLKVTESRISQIHTSANLKLKAKL 254
>TIGR_CMR|BA_4115 [details] [associations]
symbol:BA_4115 "prophage LambdaBa02, RNA polymerase sigma-F
factor, putative" species:198094 "Bacillus anthracis str. Ames"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0016989 "sigma factor antagonist activity"
evidence=ISS] [GO:0030436 "asexual sporulation" evidence=ISS]
InterPro:IPR001387 InterPro:IPR007627 InterPro:IPR010982
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF01381 Pfam:PF04542 EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0043565
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.260.40 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
RefSeq:NP_846354.1 RefSeq:YP_020759.1 ProteinModelPortal:Q81W67
DNASU:1088309 EnsemblBacteria:EBBACT00000012091
EnsemblBacteria:EBBACT00000018334 GeneID:1088309 GeneID:2818224
KEGG:ban:BA_4115 KEGG:bar:GBAA_4115 PATRIC:18785820
HOGENOM:HOG000034523 OMA:ESTVENK ProtClustDB:CLSK918226
BioCyc:BANT261594:GJ7F-4002-MONOMER Uniprot:Q81W67
Length = 299
Score = 137 (53.3 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 44/222 (19%), Positives = 108/222 (48%)
Query: 306 HVAKQY-QGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHS 364
++AK Q +++ DL+Q G +GL+ + FK + G +F ++A + IRKA+ + S
Sbjct: 25 NIAKAIEQETNLNMDDLIQSGMLGLVTARRDFKTELGFKFTTFAVPRILGYIRKAV-RDS 83
Query: 365 RTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSM 424
+ IR+ +Y + K+ K H + E +A+ + ++V ++ +S+
Sbjct: 84 QKIRITNEVYEIKGKISRMKL-------HDEEVESIAKLLEVSVRDVKTAKEFNPRTISL 136
Query: 425 QQPVWADQDTTFQEITADTGV--EIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGI 482
Q P+ +++ +++T + + + +++ + + + L+ L KE+ + L
Sbjct: 137 QTPL--NKEVNKEKVTLENTLIDKKTSMTLDDVIKKMIITAFLSTLCSKEKFVWELH--- 191
Query: 483 EDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKAS 524
K + + +G G+++ ++ ++ + +Y+ + G K S
Sbjct: 192 --AKNMTQAAIGKRLGVTQTQISRI-LKGIYKKAEEYGNKHS 230
>TIGR_CMR|BA_4566 [details] [associations]
symbol:BA_4566 "RNA polymerase sigma-27 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014209 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
RefSeq:NP_846788.1 RefSeq:YP_021211.1 RefSeq:YP_030484.1
ProteinModelPortal:P62182 DNASU:1088335
EnsemblBacteria:EBBACT00000010179 EnsemblBacteria:EBBACT00000016313
EnsemblBacteria:EBBACT00000019367 GeneID:1088335 GeneID:2818972
GeneID:2852916 KEGG:ban:BA_4566 KEGG:bar:GBAA_4566 KEGG:bat:BAS4236
HOGENOM:HOG000270274 KO:K03091 OMA:WWIRESI ProtClustDB:PRK05803
BioCyc:BANT260799:GJAJ-4292-MONOMER
BioCyc:BANT261594:GJ7F-4441-MONOMER TIGRFAMs:TIGR02846
Uniprot:P62182
Length = 237
Score = 131 (51.2 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 45/185 (24%), Positives = 93/185 (50%)
Query: 286 LHSGNS-SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRF 344
+ G++ +R LI NLRLV H+ K+++ G DL+ G++GL+K++E + G +
Sbjct: 42 MEQGDAQARNLLIEHNLRLVAHIVKKFENTGEDAEDLISIGTIGLIKAIESYSAGKGTKL 101
Query: 345 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTL---LSKVLEAKRLYIQE--GNHSPDKED 399
A+YA + I I H R ++ + +L + + E + + + + S D D
Sbjct: 102 ATYA----ARCIENEILMHLRVLKKTKKDVSLHDPIGQDKEGNEISLIDILKSESEDVID 157
Query: 400 LARRVGITVEKLERLIFIT----RMPLSMQQPVWADQDTTFQEITADTGVEIPDIS-VQK 454
+ + + + +EK++ I I + + + + D++ T +EI G+ +S ++K
Sbjct: 158 MIQ-LSMELEKIKEYIDILDEREKEVIVKRFGLGLDKEKTQREIAKALGISRSYVSRIEK 216
Query: 455 Q-LMR 458
+ LM+
Sbjct: 217 RALMK 221
>UNIPROTKB|Q9KQD4 [details] [associations]
symbol:VC_2066 "RNA polymerase sigma factor for flagellar
operon FliA" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0006352 "DNA-dependent transcription, initiation"
evidence=ISS] [GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012845 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 GO:GO:0019861 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 GO:GO:0003899
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 KO:K02405
ProtClustDB:PRK06986 TIGRFAMs:TIGR02479 HSSP:Q9EZJ8 PIR:D82123
RefSeq:NP_231698.1 ProteinModelPortal:Q9KQD4 DNASU:2613446
GeneID:2613446 KEGG:vch:VC2066 PATRIC:20083166 OMA:DSFWGYG
Uniprot:Q9KQD4
Length = 244
Score = 126 (49.4 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 55/239 (23%), Positives = 113/239 (47%)
Query: 289 GN-SSREKLINANLRLVVHVAKQYQGR---GISLHDLLQEGSMGLMKSVEKFKPQAGCRF 344
GN +S++ + LV +A GR + + DL+Q G +GL+++ + + G F
Sbjct: 11 GNLNSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSKGASF 70
Query: 345 ASYAYWWVRQTIRKAIFQHSRTIR-LPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARR 403
+YA +R IR A+ R +P +++ ++ +A + E N P ++A+
Sbjct: 71 ETYA--GIR--IRGAMLDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKF 126
Query: 404 VGITVEKLERLIF---ITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQH 460
+ +++E+ ++ +R+ V D + F+E D P V ++ R+
Sbjct: 127 LNMSLEQYHSVLMDINCSRIVGIEDLGVSDDAISPFEE-GEDNS---PFHGVAEESFRKA 182
Query: 461 VRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 519
+ + L +E ++ L + E +L E+G + G+S+ RV Q+ S+++ RL+ L
Sbjct: 183 LVESIKSLPEREALVLSLYYDEE----LNLKEIGEVLGVSESRVSQILSQSMQRLRTKL 237
>TIGR_CMR|VC_2066 [details] [associations]
symbol:VC_2066 "RNA polymerase sigma factor for flagellar
operon FliA" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012845 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 GO:GO:0019861 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 GO:GO:0003899
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 KO:K02405
ProtClustDB:PRK06986 TIGRFAMs:TIGR02479 HSSP:Q9EZJ8 PIR:D82123
RefSeq:NP_231698.1 ProteinModelPortal:Q9KQD4 DNASU:2613446
GeneID:2613446 KEGG:vch:VC2066 PATRIC:20083166 OMA:DSFWGYG
Uniprot:Q9KQD4
Length = 244
Score = 126 (49.4 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 55/239 (23%), Positives = 113/239 (47%)
Query: 289 GN-SSREKLINANLRLVVHVAKQYQGR---GISLHDLLQEGSMGLMKSVEKFKPQAGCRF 344
GN +S++ + LV +A GR + + DL+Q G +GL+++ + + G F
Sbjct: 11 GNLNSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSKGASF 70
Query: 345 ASYAYWWVRQTIRKAIFQHSRTIR-LPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARR 403
+YA +R IR A+ R +P +++ ++ +A + E N P ++A+
Sbjct: 71 ETYA--GIR--IRGAMLDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKF 126
Query: 404 VGITVEKLERLIF---ITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQH 460
+ +++E+ ++ +R+ V D + F+E D P V ++ R+
Sbjct: 127 LNMSLEQYHSVLMDINCSRIVGIEDLGVSDDAISPFEE-GEDNS---PFHGVAEESFRKA 182
Query: 461 VRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 519
+ + L +E ++ L + E +L E+G + G+S+ RV Q+ S+++ RL+ L
Sbjct: 183 LVESIKSLPEREALVLSLYYDEE----LNLKEIGEVLGVSESRVSQILSQSMQRLRTKL 237
>UNIPROTKB|Q9K5J6 [details] [associations]
symbol:sigB "RNA polymerase sigma-B factor" species:1392
"Bacillus anthracis" [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IMP] [GO:0016987 "sigma factor activity"
evidence=IMP] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 InterPro:IPR014322
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191 EMBL:AJ272497
RefSeq:NP_843493.1 RefSeq:YP_017620.1 RefSeq:YP_027202.1
ProteinModelPortal:Q9K5J6 DNASU:1088960
EnsemblBacteria:EBBACT00000009251 EnsemblBacteria:EBBACT00000017740
EnsemblBacteria:EBBACT00000023287 GeneID:1088960 GeneID:2814654
GeneID:2850205 KEGG:ban:BA_0992 KEGG:bar:GBAA_0992 KEGG:bat:BAS0928
HOGENOM:HOG000270270 KO:K03090 OMA:VEQGYEE ProtClustDB:PRK08583
BioCyc:BANT260799:GJAJ-1006-MONOMER
BioCyc:BANT261594:GJ7F-1051-MONOMER InterPro:IPR014288
TIGRFAMs:TIGR02980 TIGRFAMs:TIGR02941 Uniprot:Q9K5J6
Length = 257
Score = 126 (49.4 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 51/230 (22%), Positives = 107/230 (46%)
Query: 292 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 351
++E+L++ LV +A +Y G D++Q G +GL+ ++ ++ G F +A
Sbjct: 30 AQERLVDHYKNLVYSIAYRYSKGGPMHEDIIQVGMLGLLGAIRRYDYSIGNAFEPFAIPT 89
Query: 352 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK- 410
+ I+K + + I +P I L K+ A SP ++A +G++ E+
Sbjct: 90 IVGEIKKYLRDKTWGIHVPRRIKDLGGKIKLAIEELTDHLQRSPKIIEIADHLGLSEEEV 149
Query: 411 LERLIFITRMPLSMQQPVW--ADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLL 468
LE + +S V A ++ I + VE +++L+ ++++ +L
Sbjct: 150 LEIMDAKNNYRVSSLDDVVENASDGSSVARIESVGEVEQGYEQTERRLV---LKDIFNVL 206
Query: 469 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518
N E+ ++ F E+ K + G G+S+ V +++ +A+ +LKQ+
Sbjct: 207 NETEKSVIHYIFE-ENLNQK---DTGERLGISQMHVSRIKRQAISKLKQA 252
>TIGR_CMR|BA_0992 [details] [associations]
symbol:BA_0992 "RNA polymerase sigma-B factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=IMP] [GO:0016987
"sigma factor activity" evidence=IMP] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG1191 EMBL:AJ272497 RefSeq:NP_843493.1 RefSeq:YP_017620.1
RefSeq:YP_027202.1 ProteinModelPortal:Q9K5J6 DNASU:1088960
EnsemblBacteria:EBBACT00000009251 EnsemblBacteria:EBBACT00000017740
EnsemblBacteria:EBBACT00000023287 GeneID:1088960 GeneID:2814654
GeneID:2850205 KEGG:ban:BA_0992 KEGG:bar:GBAA_0992 KEGG:bat:BAS0928
HOGENOM:HOG000270270 KO:K03090 OMA:VEQGYEE ProtClustDB:PRK08583
BioCyc:BANT260799:GJAJ-1006-MONOMER
BioCyc:BANT261594:GJ7F-1051-MONOMER InterPro:IPR014288
TIGRFAMs:TIGR02980 TIGRFAMs:TIGR02941 Uniprot:Q9K5J6
Length = 257
Score = 126 (49.4 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 51/230 (22%), Positives = 107/230 (46%)
Query: 292 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 351
++E+L++ LV +A +Y G D++Q G +GL+ ++ ++ G F +A
Sbjct: 30 AQERLVDHYKNLVYSIAYRYSKGGPMHEDIIQVGMLGLLGAIRRYDYSIGNAFEPFAIPT 89
Query: 352 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK- 410
+ I+K + + I +P I L K+ A SP ++A +G++ E+
Sbjct: 90 IVGEIKKYLRDKTWGIHVPRRIKDLGGKIKLAIEELTDHLQRSPKIIEIADHLGLSEEEV 149
Query: 411 LERLIFITRMPLSMQQPVW--ADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLL 468
LE + +S V A ++ I + VE +++L+ ++++ +L
Sbjct: 150 LEIMDAKNNYRVSSLDDVVENASDGSSVARIESVGEVEQGYEQTERRLV---LKDIFNVL 206
Query: 469 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518
N E+ ++ F E+ K + G G+S+ V +++ +A+ +LKQ+
Sbjct: 207 NETEKSVIHYIFE-ENLNQK---DTGERLGISQMHVSRIKRQAISKLKQA 252
>UNIPROTKB|Q48GG2 [details] [associations]
symbol:fliA "RNA polymerase sigma factor for flagellar
operon" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006352 "DNA-dependent transcription, initiation"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR012845
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 GO:GO:0019861
GO:GO:0006355 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000058
GenomeReviews:CP000058_GR GO:GO:0016987 GO:GO:0003899
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270271 KO:K02405 ProtClustDB:PRK06986
TIGRFAMs:TIGR02479 RefSeq:YP_275521.1 ProteinModelPortal:Q48GG2
STRING:Q48GG2 GeneID:3558449 KEGG:psp:PSPPH_3363 PATRIC:19976132
OMA:FIERYSV Uniprot:Q48GG2
Length = 239
Score = 124 (48.7 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 61/240 (25%), Positives = 107/240 (44%)
Query: 288 SGNSSREKLINANLRLVVHVAKQYQGR---GISLHDLLQEGSMGLMKSVEKFKPQAGCRF 344
S NS E LI LV +A R + + DL+Q G +GL++ K+ G F
Sbjct: 6 SRNSQYE-LIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEVSTKYDSTKGASF 64
Query: 345 ASYAYWWVRQTIRKAIFQHSRTIR-LPENIYTLLSKVLEAKR-LYIQEGNHSPDKEDLAR 402
+YA +R IR A+ R P +++ V +A R + + G + D E +A
Sbjct: 65 ETYA--GIR--IRGAMLDEVRKGDWAPRSVHRNTRMVSDAIRAIEAKTGRDAKDHE-VAA 119
Query: 403 RVGITVEKLERLIFITR-MPLSMQQPVWADQDTT-FQEITADTGVEIPDISVQKQLMRQH 460
+ ++++ ++ T L + D D E A +E P ++ + +
Sbjct: 120 ELQLSLDDYYGILNDTLGSRLFSFDDLLQDGDHEGLHEDGASGSLE-PSRDLEDERFQAA 178
Query: 461 VRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 520
+ + + L +ER ++ L + E +L E+G + G+S+ RV QL S+ RL+ LG
Sbjct: 179 LADAIANLPERERLVLALYYDEE----LNLKEIGEVLGVSESRVSQLHSQCAARLRGRLG 234
>UNIPROTKB|Q884V7 [details] [associations]
symbol:fliA "Motility sigma factor FliA" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR012845 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AE016853
GenomeReviews:AE016853_GR GO:GO:0016987 GO:GO:0003899
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270271 KO:K02405 ProtClustDB:PRK06986
TIGRFAMs:TIGR02479 HSSP:P00579 OMA:FIERYSV RefSeq:NP_791802.1
ProteinModelPortal:Q884V7 GeneID:1183624 KEGG:pst:PSPTO_1979
PATRIC:19995230 BioCyc:PSYR223283:GJIX-2019-MONOMER Uniprot:Q884V7
Length = 246
Score = 124 (48.7 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 61/240 (25%), Positives = 107/240 (44%)
Query: 288 SGNSSREKLINANLRLVVHVAKQYQGR---GISLHDLLQEGSMGLMKSVEKFKPQAGCRF 344
S NS E LI LV +A R + + DL+Q G +GL++ K+ G F
Sbjct: 13 SRNSQYE-LIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEVSTKYDSTKGASF 71
Query: 345 ASYAYWWVRQTIRKAIFQHSRTIR-LPENIYTLLSKVLEAKR-LYIQEGNHSPDKEDLAR 402
+YA +R IR A+ R P +++ V +A R + + G + D E +A
Sbjct: 72 ETYA--GIR--IRGAMLDEVRKGDWAPRSVHRNTRMVSDAIRAIEAKTGRDAKDHE-VAA 126
Query: 403 RVGITVEKLERLIFITR-MPLSMQQPVWADQDTT-FQEITADTGVEIPDISVQKQLMRQH 460
+ ++++ ++ T L + D D E A +E P ++ + +
Sbjct: 127 ELQLSLDDYYGILNDTLGSRLFSFDDLLQDGDHEGLHEDGASGSLE-PSRDLEDERFQAA 185
Query: 461 VRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 520
+ + + L +ER ++ L + E +L E+G + G+S+ RV QL S+ RL+ LG
Sbjct: 186 LADAIANLPERERLVLALYYDEE----LNLKEIGEVLGVSESRVSQLHSQCAARLRGRLG 241
>TIGR_CMR|CPS_1519 [details] [associations]
symbol:CPS_1519 "motility sigma factor FliA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009296
"flagellum assembly" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR012845
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016987 GO:GO:0003899
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270271 KO:K02405 ProtClustDB:PRK06986
TIGRFAMs:TIGR02479 RefSeq:YP_268261.1 ProteinModelPortal:Q485K4
STRING:Q485K4 GeneID:3522182 KEGG:cps:CPS_1519 PATRIC:21466245
OMA:YDEWRED BioCyc:CPSY167879:GI48-1600-MONOMER Uniprot:Q485K4
Length = 239
Score = 122 (48.0 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 52/239 (21%), Positives = 113/239 (47%)
Query: 285 ELHSGNSSREK--LINANLRLVVHVAKQYQGR---GISLHDLLQEGSMGLMKSVEKFKPQ 339
+++S N+ +K L+ LV +A R + + DL+Q G +GL ++ F
Sbjct: 3 KVNSYNNQIDKAALLEQQTVLVKRIAYHLLARLPASVQVDDLIQSGMIGLFEAANNFDNT 62
Query: 340 AGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEA-KRLYIQEGNHSPDKE 398
G F ++A +R + I + T P +++ + EA K+L Q G D E
Sbjct: 63 KGASFETFAGIRIRGAMLDEIRRGDWT---PRSVHKNSRMISEAIKQLEAQLGRDVSDVE 119
Query: 399 DLARRVGITVEKLERLIF-ITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLM 457
+A ++ I+++ +++ ++ + + ++D + + D + P S+++
Sbjct: 120 -VAEKLDISLKDYHQILSEVSTGKILGIDDLGVNEDAI--KPSDDYIGDDPYQSIERIAF 176
Query: 458 RQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 516
++ + + L +E ++ L + E +L E+G + +S+ RV Q+ S+A++RLK
Sbjct: 177 KKGLTQCIKSLPEREALVLSLYYDEE----LNLREIGQVLDVSESRVSQIHSQAMHRLK 231
>TIGR_CMR|CJE_0058 [details] [associations]
symbol:CJE_0058 "RNA polymerase sigma factor, sigma-F"
species:195099 "Campylobacter jejuni RM1221" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR012845
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0016987 GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG1191 HOGENOM:HOG000270271 KO:K02405
OMA:TYAITRI ProtClustDB:PRK06986 TIGRFAMs:TIGR02479
RefSeq:YP_178083.1 ProteinModelPortal:Q5HXA2 STRING:Q5HXA2
GeneID:3230821 KEGG:cjr:CJE0058 PATRIC:20041821
BioCyc:CJEJ195099:GJC0-62-MONOMER Uniprot:Q5HXA2
Length = 230
Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
Identities = 46/220 (20%), Positives = 101/220 (45%)
Query: 301 LRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAI 360
LR + K+ I ++DL+ G ++K ++ + F +A R+ + ++
Sbjct: 28 LRAMAFRLKERLPSSIDVNDLISIGVEEMIKLSRRYDKEQNDNFWGFA----RKRVNGSM 83
Query: 361 FQHSRTIRLPENIYTLLSKVLEA-KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITR 419
+ R++ + + K ++A Y E PD E LA+++ + VEK++ + T
Sbjct: 84 LDYLRSLDVMSRNNRKIIKDIDAIMDEYFLEHECEPDDEYLAKKLDLDVEKIKEVR--TA 141
Query: 420 MPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLR 479
+S P+ D + D +E ++K+ + + + +L L +++ I++L
Sbjct: 142 HAISYTLPI----DEQIELYNEDNTLE----KIEKEELLEKIHEVLDDLKERDQLIIQLY 193
Query: 480 FGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 519
+ E SL E+ I +S+ R+ Q+ + L +L++ L
Sbjct: 194 YYEE----LSLKEISEILQISESRISQIHKKLLKKLRERL 229
>TIGR_CMR|SO_3210 [details] [associations]
symbol:SO_3210 "RNA polymerase sigma-27 factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009296
"flagellum assembly" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR012845
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 GO:GO:0019861
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0016987 GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 HOGENOM:HOG000270271 KO:K02405
ProtClustDB:PRK06986 TIGRFAMs:TIGR02479 HSSP:P00579
RefSeq:NP_718765.1 ProteinModelPortal:Q8ECD3 GeneID:1170903
KEGG:son:SO_3210 PATRIC:23526104 OMA:PHESEIA Uniprot:Q8ECD3
Length = 237
Score = 113 (44.8 bits), Expect = 0.00067, P = 0.00067
Identities = 53/245 (21%), Positives = 113/245 (46%)
Query: 283 KSELHSGNSSREKLINANLRLVVHVAKQYQGR---GISLHDLLQEGSMGLMKSVEKFKPQ 339
K+ ++ ++ ++ LV +A R + L DLLQ G MGL+++ KF
Sbjct: 3 KAAAYTCLDNKTSIVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASSKFDGG 62
Query: 340 AGCRFASYAYWWVRQTIRKAIFQHSRTIR-LPENIYTLLSKVLEA-KRLYIQEGNHSPDK 397
G +F ++A +R IR A+ R +P +++ ++ +A L G + D
Sbjct: 63 KGAKFETFA--GIR--IRGAMLDEIRRGDWVPRSVHRNNRRIAQAIDELEQVLGRDARDT 118
Query: 398 EDLARRVGITVEKLERLIF-ITRMPLSMQQPVWADQD--TTFQEITADTGVEIPDISVQK 454
E +A ++ +T+++ ++ ++ + + + +D TT ++ T + +
Sbjct: 119 E-IAEKLDMTLDEYHHILNDVSVGKIIGIEDLGVSEDILTTSDNVSDGTFEVLAETQFHS 177
Query: 455 QLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYR 514
L+ + +L ++ ++ L + + +L E+G I +S+ RV Q+ S+A+ R
Sbjct: 178 ALVEA-----IKILPERDALVLSLYYD----EALNLKEIGAILEVSESRVSQILSQAMLR 228
Query: 515 LKQSL 519
LK L
Sbjct: 229 LKGKL 233
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 532 498 0.00084 119 3 11 22 0.42 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 68
No. of states in DFA: 616 (65 KB)
Total size of DFA: 280 KB (2148 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 46.95u 0.10s 47.05t Elapsed: 00:00:02
Total cpu time: 46.96u 0.10s 47.06t Elapsed: 00:00:02
Start: Fri May 10 09:59:20 2013 End: Fri May 10 09:59:22 2013