Query 009567
Match_columns 532
No_of_seqs 405 out of 2306
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 08:05:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009567.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009567hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l9z_H Sigma factor SIGA; heli 100.0 3.1E-55 1.1E-59 467.9 36.0 315 215-529 91-438 (438)
2 2a6h_F RNA polymerase sigma fa 100.0 1.8E-55 6.2E-60 469.6 27.3 311 216-529 77-423 (423)
3 3iyd_F RNA polymerase sigma fa 100.0 3.7E-42 1.3E-46 382.5 0.3 251 279-529 358-612 (613)
4 3ugo_A RNA polymerase sigma fa 100.0 1.6E-36 5.6E-41 301.7 15.8 209 216-424 5-245 (245)
5 1rp3_A RNA polymerase sigma fa 100.0 8.3E-32 2.8E-36 260.3 20.5 222 290-521 11-237 (239)
6 1l0o_C Sigma factor; bergerat 100.0 2E-31 6.7E-36 257.5 6.3 215 290-516 27-243 (243)
7 1or7_A Sigma-24, RNA polymeras 99.9 2.4E-22 8.3E-27 188.7 15.0 180 279-521 10-190 (194)
8 2q1z_A RPOE, ECF SIGE; ECF sig 99.9 7.5E-23 2.6E-27 190.9 10.1 171 277-519 11-183 (184)
9 3mzy_A RNA polymerase sigma-H 99.9 2.7E-21 9.4E-26 175.6 14.6 155 315-523 1-160 (164)
10 2lfw_A PHYR sigma-like domain; 99.7 8E-19 2.7E-23 161.7 -3.6 143 293-523 3-145 (157)
11 1sig_A Sigma70, RNA polymerase 99.6 3.5E-16 1.2E-20 161.7 9.3 85 280-364 250-338 (339)
12 3t72_q RNA polymerase sigma fa 99.5 2.5E-14 8.6E-19 123.2 10.5 80 451-530 3-82 (99)
13 3n0r_A Response regulator; sig 99.5 1.1E-14 3.9E-19 146.9 6.6 142 289-520 19-160 (286)
14 1tty_A Sigma-A, RNA polymerase 99.3 1.3E-12 4.4E-17 109.2 7.2 72 459-530 10-81 (87)
15 1ku3_A Sigma factor SIGA; heli 99.3 8.3E-13 2.8E-17 106.5 3.6 68 461-528 4-72 (73)
16 3hug_A RNA polymerase sigma fa 99.3 1.4E-11 4.9E-16 103.6 10.7 75 445-523 15-89 (92)
17 2p7v_B Sigma-70, RNA polymeras 99.3 1.5E-12 5.1E-17 103.5 3.5 66 464-529 2-67 (68)
18 2o8x_A Probable RNA polymerase 99.0 8.6E-10 2.9E-14 87.0 6.9 64 457-524 5-68 (70)
19 2o7g_A Probable RNA polymerase 98.9 4.8E-09 1.7E-13 90.3 8.2 82 281-365 13-95 (112)
20 1xsv_A Hypothetical UPF0122 pr 98.8 1.7E-08 5.9E-13 88.4 10.4 69 452-524 9-78 (113)
21 1h3l_A RNA polymerase sigma fa 98.8 9.1E-09 3.1E-13 84.6 6.3 75 288-364 9-83 (87)
22 1s7o_A Hypothetical UPF0122 pr 98.7 2.9E-08 1E-12 87.1 7.4 63 458-524 12-75 (113)
23 3clo_A Transcriptional regulat 98.6 2.5E-11 8.4E-16 120.4 -15.2 154 281-519 86-244 (258)
24 2rnj_A Response regulator prot 98.5 3.8E-08 1.3E-12 82.4 3.8 58 456-518 18-75 (91)
25 1jhg_A Trp operon repressor; c 98.5 8.5E-08 2.9E-12 82.5 5.1 64 457-521 24-91 (101)
26 3c57_A Two component transcrip 98.5 1.8E-07 6E-12 79.2 6.5 60 457-521 17-76 (95)
27 1x3u_A Transcriptional regulat 98.5 1.9E-07 6.6E-12 75.2 6.3 55 459-518 8-62 (79)
28 1je8_A Nitrate/nitrite respons 98.4 3.1E-07 1.1E-11 75.5 4.7 56 460-520 14-69 (82)
29 1fse_A GERE; helix-turn-helix 98.2 1.5E-06 5.1E-11 68.8 5.1 53 461-518 5-57 (74)
30 3ulq_B Transcriptional regulat 98.0 8.2E-06 2.8E-10 68.4 6.4 49 463-516 25-73 (90)
31 2jpc_A SSRB; DNA binding prote 97.9 7.9E-06 2.7E-10 62.5 4.6 43 470-517 1-43 (61)
32 1p4w_A RCSB; solution structur 97.9 1.6E-05 5.3E-10 68.0 6.1 47 466-517 33-79 (99)
33 2q0o_A Probable transcriptiona 97.5 0.00015 5.1E-09 70.3 7.0 46 467-517 175-220 (236)
34 1l3l_A Transcriptional activat 97.5 0.00015 5.2E-09 70.2 6.8 45 467-516 173-217 (234)
35 3szt_A QCSR, quorum-sensing co 97.3 0.00025 8.5E-09 69.1 6.3 46 466-516 174-219 (237)
36 3qp6_A CVIR transcriptional re 97.2 0.00037 1.3E-08 69.2 6.3 46 467-517 197-242 (265)
37 1tc3_C Protein (TC3 transposas 96.9 0.0012 4.1E-08 47.0 5.1 40 467-510 5-44 (51)
38 1yio_A Response regulatory pro 96.6 0.0049 1.7E-07 57.0 7.7 50 462-516 137-186 (208)
39 2w7n_A TRFB transcriptional re 96.4 0.012 4.1E-07 50.4 8.4 46 467-516 18-63 (101)
40 1a04_A Nitrate/nitrite respons 96.3 0.0064 2.2E-07 56.6 7.0 46 466-516 153-198 (215)
41 2x48_A CAG38821; archeal virus 96.1 0.0049 1.7E-07 45.8 4.2 38 469-511 18-55 (55)
42 3c3w_A Two component transcrip 96.0 0.0085 2.9E-07 56.7 6.4 46 466-516 148-193 (225)
43 3klo_A Transcriptional regulat 95.4 0.014 4.8E-07 54.9 5.0 47 465-516 157-203 (225)
44 3p7n_A Sensor histidine kinase 94.9 0.068 2.3E-06 50.8 8.4 54 458-516 189-242 (258)
45 3iyd_F RNA polymerase sigma fa 94.1 0.01 3.6E-07 65.7 0.4 33 216-248 94-126 (613)
46 1p2f_A Response regulator; DRR 93.5 0.061 2.1E-06 50.0 4.7 50 467-517 145-197 (220)
47 1qgp_A Protein (double strande 93.5 0.087 3E-06 42.5 4.8 44 470-517 14-57 (77)
48 1jko_C HIN recombinase, DNA-in 93.3 0.085 2.9E-06 37.6 4.1 33 473-510 12-44 (52)
49 2gwr_A DNA-binding response re 93.3 0.085 2.9E-06 49.9 5.2 50 467-517 153-207 (238)
50 2oqr_A Sensory transduction pr 92.9 0.078 2.7E-06 49.6 4.4 50 467-517 156-210 (230)
51 1qbj_A Protein (double-strande 92.7 0.17 5.9E-06 41.3 5.5 43 471-517 11-53 (81)
52 1kgs_A DRRD, DNA binding respo 92.6 0.089 3.1E-06 48.9 4.3 50 467-517 151-205 (225)
53 1ys7_A Transcriptional regulat 92.2 0.088 3E-06 49.2 3.7 50 467-517 159-213 (233)
54 3kor_A Possible Trp repressor; 91.4 0.18 6E-06 44.3 4.3 35 466-506 60-94 (119)
55 1u78_A TC3 transposase, transp 91.3 0.24 8.3E-06 42.9 5.3 40 467-510 6-45 (141)
56 3ugo_A RNA polymerase sigma fa 91.0 0.041 1.4E-06 54.0 0.0 51 461-516 192-244 (245)
57 2hqr_A Putative transcriptiona 91.0 0.076 2.6E-06 49.5 1.8 50 467-517 143-197 (223)
58 3r0j_A Possible two component 90.9 0.35 1.2E-05 46.1 6.4 50 467-517 176-230 (250)
59 1pdn_C Protein (PRD paired); p 90.8 0.38 1.3E-05 40.5 6.0 42 467-512 17-58 (128)
60 3q9s_A DNA-binding response re 90.6 0.15 5.2E-06 49.0 3.6 50 467-517 182-236 (249)
61 1zx4_A P1 PARB, plasmid partit 89.9 0.28 9.7E-06 46.5 4.7 35 473-512 15-49 (192)
62 2d1h_A ST1889, 109AA long hypo 89.4 0.73 2.5E-05 37.6 6.5 48 464-517 15-62 (109)
63 1k78_A Paired box protein PAX5 89.0 0.6 2.1E-05 41.2 6.0 42 467-512 32-73 (149)
64 3k2z_A LEXA repressor; winged 88.8 0.44 1.5E-05 44.5 5.2 42 467-508 2-45 (196)
65 2heo_A Z-DNA binding protein 1 88.6 0.57 2E-05 36.4 4.9 44 468-517 8-51 (67)
66 3r0a_A Putative transcriptiona 88.4 0.91 3.1E-05 39.3 6.6 49 463-517 19-68 (123)
67 1oyi_A Double-stranded RNA-bin 87.8 0.4 1.4E-05 39.4 3.6 24 487-510 30-53 (82)
68 2elh_A CG11849-PA, LD40883P; s 87.4 0.97 3.3E-05 36.7 5.8 27 486-512 37-63 (87)
69 3nqo_A MARR-family transcripti 87.4 1.5 5.2E-05 40.3 7.9 53 457-510 28-80 (189)
70 2dbb_A Putative HTH-type trans 87.2 1.1 3.9E-05 39.6 6.6 45 466-517 5-49 (151)
71 2cfx_A HTH-type transcriptiona 86.8 1.1 3.7E-05 39.6 6.3 40 467-509 2-41 (144)
72 1y0u_A Arsenical resistance op 86.6 3.2 0.00011 33.8 8.6 40 469-517 30-69 (96)
73 2o3f_A Putative HTH-type trans 86.1 1.9 6.5E-05 36.8 7.2 49 459-509 10-61 (111)
74 2cyy_A Putative HTH-type trans 86.0 1.5 5.1E-05 38.9 6.8 40 467-509 4-43 (151)
75 1i1g_A Transcriptional regulat 86.0 1.3 4.5E-05 38.5 6.3 43 468-517 2-44 (141)
76 2w48_A Sorbitol operon regulat 85.8 0.87 3E-05 45.7 5.7 36 474-513 12-47 (315)
77 2glo_A Brinker CG9653-PA; prot 85.7 1.4 4.9E-05 32.9 5.5 33 487-520 21-57 (59)
78 3tgn_A ADC operon repressor AD 85.7 1.3 4.6E-05 38.1 6.2 40 467-510 35-74 (146)
79 2cg4_A Regulatory protein ASNC 85.6 1.6 5.4E-05 38.8 6.7 40 467-509 5-44 (152)
80 2x4h_A Hypothetical protein SS 85.2 1.3 4.3E-05 38.4 5.7 45 466-510 9-54 (139)
81 2p5v_A Transcriptional regulat 85.1 1.4 4.9E-05 39.5 6.2 41 467-510 7-47 (162)
82 1r1u_A CZRA, repressor protein 85.1 2.8 9.4E-05 34.9 7.6 50 460-517 15-65 (106)
83 3frw_A Putative Trp repressor 85.0 2.3 7.9E-05 36.5 7.0 41 466-506 35-77 (107)
84 2w25_A Probable transcriptiona 84.9 1.5 5.2E-05 38.7 6.2 40 467-509 4-43 (150)
85 3ech_A MEXR, multidrug resista 84.7 2.1 7.1E-05 36.9 6.9 51 457-510 20-74 (142)
86 1sfx_A Conserved hypothetical 84.7 1.3 4.5E-05 35.9 5.3 40 467-509 17-56 (109)
87 3bro_A Transcriptional regulat 84.6 3.8 0.00013 34.9 8.5 51 458-509 20-72 (141)
88 1sfu_A 34L protein; protein/Z- 84.6 1.5 5E-05 35.4 5.3 33 481-517 23-55 (75)
89 2gxg_A 146AA long hypothetical 84.4 2.8 9.7E-05 35.9 7.7 47 460-510 25-73 (146)
90 2pn6_A ST1022, 150AA long hypo 84.4 1.5 5.2E-05 38.6 6.0 43 468-517 1-43 (150)
91 3i4p_A Transcriptional regulat 84.1 1.6 5.4E-05 39.5 6.0 39 468-509 1-39 (162)
92 2jn6_A Protein CGL2762, transp 84.0 1.8 6.1E-05 35.4 5.8 41 468-511 6-47 (97)
93 3bpv_A Transcriptional regulat 83.6 3.3 0.00011 35.1 7.7 50 458-510 15-66 (138)
94 2k27_A Paired box protein PAX- 83.0 0.68 2.3E-05 41.5 3.0 39 468-510 26-64 (159)
95 3bdd_A Regulatory protein MARR 82.8 3.5 0.00012 35.0 7.6 41 467-510 28-68 (142)
96 3cuo_A Uncharacterized HTH-typ 82.5 1.9 6.6E-05 34.7 5.4 49 462-517 15-64 (99)
97 2fa5_A Transcriptional regulat 82.5 4.8 0.00016 35.2 8.5 50 459-511 35-87 (162)
98 3pqk_A Biofilm growth-associat 82.5 3.6 0.00012 33.7 7.2 50 460-517 12-62 (102)
99 2nnn_A Probable transcriptiona 82.3 2.7 9.1E-05 35.7 6.5 48 459-509 26-74 (140)
100 2e1c_A Putative HTH-type trans 82.2 2.2 7.4E-05 39.1 6.2 40 467-509 24-63 (171)
101 3jth_A Transcription activator 81.9 4.1 0.00014 33.1 7.3 50 460-517 12-62 (98)
102 2qvo_A Uncharacterized protein 81.9 1.5 5E-05 35.9 4.5 44 467-510 9-53 (95)
103 2oqg_A Possible transcriptiona 81.8 2.9 0.0001 34.7 6.4 45 461-509 11-56 (114)
104 1q1h_A TFE, transcription fact 81.8 1.7 5.7E-05 36.4 4.9 47 466-518 14-60 (110)
105 3eco_A MEPR; mutlidrug efflux 81.7 4.6 0.00016 34.4 7.8 53 457-510 16-70 (139)
106 2ia0_A Putative HTH-type trans 81.6 2.2 7.6E-05 39.0 6.0 41 466-509 13-53 (171)
107 3sqn_A Conserved domain protei 81.6 1.7 5.8E-05 46.6 6.0 105 394-516 32-137 (485)
108 2zkz_A Transcriptional repress 81.5 2.2 7.6E-05 35.2 5.5 39 469-510 26-64 (99)
109 1ku9_A Hypothetical protein MJ 81.5 4.1 0.00014 34.8 7.5 41 466-508 22-62 (152)
110 2htj_A P fimbrial regulatory p 81.4 3.1 0.00011 32.9 6.2 28 486-517 13-40 (81)
111 4hbl_A Transcriptional regulat 81.4 4.7 0.00016 35.0 8.0 48 460-510 29-78 (149)
112 2l0k_A Stage III sporulation p 81.3 1.5 5E-05 36.7 4.3 38 470-511 7-44 (93)
113 2lkp_A Transcriptional regulat 81.3 3.7 0.00012 34.6 6.9 45 461-509 22-67 (119)
114 3mn2_A Probable ARAC family tr 81.2 9.9 0.00034 31.3 9.6 36 382-417 6-41 (108)
115 3cdh_A Transcriptional regulat 80.9 5.1 0.00018 34.8 8.0 50 458-510 29-80 (155)
116 2rdp_A Putative transcriptiona 80.7 4.6 0.00016 34.8 7.6 49 459-510 29-79 (150)
117 3iwf_A Transcription regulator 80.7 4.6 0.00016 34.3 7.3 62 458-519 5-71 (107)
118 1jgs_A Multiple antibiotic res 80.6 4.8 0.00016 34.1 7.6 51 457-510 19-71 (138)
119 2qww_A Transcriptional regulat 80.5 4.5 0.00015 35.1 7.5 41 467-510 38-78 (154)
120 3fm5_A Transcriptional regulat 79.9 5.1 0.00017 34.7 7.6 52 457-510 24-77 (150)
121 1jhf_A LEXA repressor; LEXA SO 79.8 1.1 3.7E-05 41.8 3.3 44 467-510 3-49 (202)
122 4b8x_A SCO5413, possible MARR- 79.8 3.5 0.00012 36.2 6.5 53 457-510 20-74 (147)
123 1u78_A TC3 transposase, transp 79.6 11 0.00037 32.1 9.5 77 395-510 23-102 (141)
124 3bj6_A Transcriptional regulat 79.3 5.3 0.00018 34.5 7.5 48 460-510 28-77 (152)
125 1uly_A Hypothetical protein PH 79.2 2.9 0.0001 39.1 6.1 39 468-510 18-56 (192)
126 2fbh_A Transcriptional regulat 79.1 5 0.00017 34.2 7.2 51 458-510 23-75 (146)
127 3hsr_A HTH-type transcriptiona 79.0 3.9 0.00013 35.1 6.5 50 458-510 22-73 (140)
128 1s3j_A YUSO protein; structura 78.9 3.5 0.00012 35.7 6.3 48 460-510 25-74 (155)
129 3o9x_A Uncharacterized HTH-typ 78.7 4.8 0.00016 34.7 7.0 39 466-510 69-107 (133)
130 2pex_A Transcriptional regulat 78.7 4.7 0.00016 35.0 7.0 50 458-510 33-84 (153)
131 1uxc_A FRUR (1-57), fructose r 78.6 1.7 5.8E-05 33.7 3.5 23 488-510 1-23 (65)
132 3s2w_A Transcriptional regulat 78.6 3.9 0.00013 35.9 6.5 51 457-510 35-87 (159)
133 3qq6_A HTH-type transcriptiona 78.5 2.4 8.1E-05 33.3 4.5 25 486-510 22-46 (78)
134 3nrv_A Putative transcriptiona 78.5 3.3 0.00011 35.7 5.9 42 467-511 37-78 (148)
135 2kko_A Possible transcriptiona 78.4 3.4 0.00012 34.6 5.8 49 461-517 15-64 (108)
136 1r1t_A Transcriptional repress 78.4 5.1 0.00017 34.5 7.0 47 463-517 38-85 (122)
137 3oop_A LIN2960 protein; protei 78.2 3.9 0.00014 35.0 6.3 50 458-510 23-74 (143)
138 3kp7_A Transcriptional regulat 78.1 4.4 0.00015 35.1 6.6 47 460-510 26-74 (151)
139 2nyx_A Probable transcriptiona 77.9 3.9 0.00013 36.4 6.4 41 467-510 42-82 (168)
140 3g3z_A NMB1585, transcriptiona 77.9 5.7 0.00019 34.1 7.3 49 459-510 18-68 (145)
141 1zug_A Phage 434 CRO protein; 77.7 2.7 9.1E-05 31.5 4.4 25 486-510 15-39 (71)
142 3k0l_A Repressor protein; heli 77.7 5.6 0.00019 35.0 7.3 51 457-510 31-83 (162)
143 3f3x_A Transcriptional regulat 77.6 6.2 0.00021 33.8 7.4 40 467-510 34-73 (144)
144 1lj9_A Transcriptional regulat 77.3 4.5 0.00015 34.6 6.4 50 458-510 15-66 (144)
145 2a61_A Transcriptional regulat 77.2 3.2 0.00011 35.5 5.4 41 467-510 30-70 (145)
146 1r69_A Repressor protein CI; g 77.1 2.8 9.7E-05 31.1 4.4 25 486-510 13-37 (69)
147 3cjn_A Transcriptional regulat 77.1 2.9 0.0001 36.7 5.2 41 467-510 49-89 (162)
148 2xi8_A Putative transcription 77.1 2.5 8.7E-05 31.1 4.1 25 486-510 13-37 (66)
149 2p5k_A Arginine repressor; DNA 76.6 3.5 0.00012 30.6 4.8 25 485-509 17-46 (64)
150 2a6c_A Helix-turn-helix motif; 76.4 3 0.0001 33.0 4.6 25 486-510 30-54 (83)
151 1y7y_A C.AHDI; helix-turn-heli 76.3 3.1 0.00011 31.4 4.5 25 486-510 25-49 (74)
152 3b7h_A Prophage LP1 protein 11 76.1 3.5 0.00012 31.5 4.8 25 486-510 19-43 (78)
153 3hyi_A Protein DUF199/WHIA; la 76.0 3.5 0.00012 41.5 5.9 44 465-511 241-284 (295)
154 2b5a_A C.BCLI; helix-turn-heli 76.0 3.2 0.00011 31.7 4.5 25 486-510 22-46 (77)
155 3boq_A Transcriptional regulat 75.8 3.7 0.00013 35.9 5.5 50 459-510 33-85 (160)
156 1on2_A Transcriptional regulat 75.8 2.4 8.4E-05 36.7 4.2 42 468-509 2-44 (142)
157 4fx0_A Probable transcriptiona 75.7 7.5 0.00026 34.2 7.5 52 459-510 20-75 (148)
158 3ryp_A Catabolite gene activat 75.6 11 0.00037 34.0 8.8 50 465-518 135-194 (210)
159 1neq_A DNA-binding protein NER 75.6 1.6 5.6E-05 34.6 2.8 25 486-510 21-45 (74)
160 4ghj_A Probable transcriptiona 75.6 2.9 9.8E-05 35.2 4.4 25 486-510 48-72 (101)
161 3f6w_A XRE-family like protein 75.6 2.4 8.1E-05 33.1 3.7 25 486-510 26-50 (83)
162 1p6r_A Penicillinase repressor 75.5 3.2 0.00011 32.7 4.5 42 466-510 5-50 (82)
163 2wiu_B HTH-type transcriptiona 75.5 3.8 0.00013 32.1 5.0 25 486-510 24-48 (88)
164 2jt1_A PEFI protein; solution 75.5 2 6.9E-05 34.6 3.3 24 486-509 23-46 (77)
165 3eus_A DNA-binding protein; st 75.4 3 0.0001 33.3 4.3 25 486-510 26-50 (86)
166 2gau_A Transcriptional regulat 75.4 12 0.0004 34.5 9.1 49 465-517 148-206 (232)
167 2fbi_A Probable transcriptiona 75.2 2.8 9.5E-05 35.7 4.4 41 467-510 33-73 (142)
168 2r1j_L Repressor protein C2; p 74.9 2.7 9.2E-05 31.1 3.7 25 486-510 17-41 (68)
169 2k9q_A Uncharacterized protein 74.7 2.6 9E-05 32.6 3.7 25 486-510 14-38 (77)
170 2dk5_A DNA-directed RNA polyme 74.6 2.8 9.5E-05 34.7 4.0 46 466-516 16-61 (91)
171 3s8q_A R-M controller protein; 74.4 3.6 0.00012 32.1 4.5 25 486-510 23-47 (82)
172 1j1v_A Chromosomal replication 74.1 7.5 0.00026 32.3 6.6 39 486-528 45-85 (94)
173 3t76_A VANU, transcriptional r 74.0 3.6 0.00012 33.6 4.5 25 486-510 36-60 (88)
174 2hr3_A Probable transcriptiona 73.9 3.1 0.00011 35.8 4.4 42 467-510 32-73 (147)
175 2b0l_A GTP-sensing transcripti 73.9 2.4 8.1E-05 35.7 3.5 31 484-518 39-70 (102)
176 1u2w_A CADC repressor, cadmium 73.9 3.7 0.00013 35.2 4.8 38 469-509 41-78 (122)
177 3kz3_A Repressor protein CI; f 73.7 2.1 7.3E-05 33.5 3.0 25 486-510 24-48 (80)
178 1hlv_A CENP-B, major centromer 73.7 4.7 0.00016 34.5 5.5 46 467-515 7-53 (131)
179 2eth_A Transcriptional regulat 73.5 3.7 0.00013 35.8 4.9 41 467-510 41-81 (154)
180 3bja_A Transcriptional regulat 73.4 3.9 0.00013 34.6 4.8 49 459-510 20-70 (139)
181 3fmy_A HTH-type transcriptiona 73.3 3.2 0.00011 32.1 3.9 37 468-510 11-47 (73)
182 2ewt_A BLDD, putative DNA-bind 73.2 4.7 0.00016 30.2 4.8 25 486-510 20-46 (71)
183 2ef8_A C.ECOT38IS, putative tr 73.0 4 0.00014 31.6 4.5 25 486-510 22-46 (84)
184 3deu_A Transcriptional regulat 73.0 8 0.00027 34.5 7.1 52 457-510 38-91 (166)
185 1adr_A P22 C2 repressor; trans 72.5 3.2 0.00011 31.5 3.7 25 486-510 17-41 (76)
186 2fu4_A Ferric uptake regulatio 72.3 5.9 0.0002 31.1 5.4 45 467-517 14-64 (83)
187 3omt_A Uncharacterized protein 72.1 2.6 8.7E-05 32.2 3.0 25 486-510 20-44 (73)
188 3e6m_A MARR family transcripti 71.7 6.6 0.00023 34.5 6.1 49 459-510 40-90 (161)
189 2oz6_A Virulence factor regula 71.6 15 0.00052 32.9 8.7 27 487-517 164-190 (207)
190 4aik_A Transcriptional regulat 71.6 9.9 0.00034 33.5 7.3 51 458-510 17-69 (151)
191 1x57_A Endothelial differentia 71.4 5.5 0.00019 31.7 5.1 25 486-510 25-49 (91)
192 1ais_B TFB TFIIB, protein (tra 71.4 61 0.0021 29.6 18.5 176 298-515 10-193 (200)
193 3bs3_A Putative DNA-binding pr 71.3 4.2 0.00014 30.9 4.2 25 486-510 22-46 (76)
194 2kpj_A SOS-response transcript 71.1 4.3 0.00015 32.7 4.4 25 486-510 21-45 (94)
195 4ham_A LMO2241 protein; struct 71.0 3.5 0.00012 36.0 4.0 30 484-517 34-64 (134)
196 1ub9_A Hypothetical protein PH 70.9 3.9 0.00013 32.8 4.1 38 469-509 15-52 (100)
197 3u2r_A Regulatory protein MARR 70.8 5.2 0.00018 35.5 5.3 53 457-510 31-85 (168)
198 2fbk_A Transcriptional regulat 70.7 4.7 0.00016 36.4 5.0 53 458-510 55-109 (181)
199 2ppx_A AGR_C_3184P, uncharacte 70.7 4.3 0.00015 33.2 4.3 25 486-510 42-66 (99)
200 3tqn_A Transcriptional regulat 70.5 3.7 0.00013 34.8 4.0 29 485-517 30-59 (113)
201 2frh_A SARA, staphylococcal ac 70.5 3.4 0.00012 35.3 3.8 49 460-509 25-75 (127)
202 3g5g_A Regulatory protein; tra 70.5 4.6 0.00016 33.3 4.5 25 486-510 40-64 (99)
203 3b02_A Transcriptional regulat 70.4 15 0.0005 33.0 8.4 51 464-518 106-166 (195)
204 1tbx_A ORF F-93, hypothetical 70.1 3.9 0.00013 33.2 3.9 41 467-510 5-49 (99)
205 2jsc_A Transcriptional regulat 70.0 4.4 0.00015 34.4 4.4 37 469-509 20-56 (118)
206 3dv8_A Transcriptional regulat 70.0 10 0.00035 34.4 7.3 49 466-518 144-196 (220)
207 2zcw_A TTHA1359, transcription 69.9 18 0.0006 32.6 8.8 51 464-518 113-173 (202)
208 2hin_A GP39, repressor protein 69.7 5 0.00017 31.8 4.3 22 489-510 12-33 (71)
209 2bv6_A MGRA, HTH-type transcri 69.4 5.1 0.00018 34.2 4.7 42 466-510 33-74 (142)
210 2wus_R RODZ, putative uncharac 69.1 5.5 0.00019 34.0 4.8 25 486-510 19-43 (112)
211 2ao9_A Phage protein; structur 69.0 9.5 0.00032 34.8 6.5 44 466-509 22-70 (155)
212 3iwz_A CAP-like, catabolite ac 68.9 22 0.00074 32.4 9.3 50 465-518 155-214 (230)
213 1j5y_A Transcriptional regulat 68.9 6.1 0.00021 36.4 5.4 38 470-509 21-58 (187)
214 3bd1_A CRO protein; transcript 68.5 5 0.00017 31.2 4.1 25 486-511 11-35 (79)
215 2o38_A Hypothetical protein; a 68.1 5.3 0.00018 34.4 4.5 25 486-510 52-76 (120)
216 1xmk_A Double-stranded RNA-spe 68.1 3.6 0.00012 33.3 3.2 24 486-509 24-48 (79)
217 3oio_A Transcriptional regulat 68.0 49 0.0017 27.2 10.8 36 382-417 11-46 (113)
218 3by6_A Predicted transcription 68.0 4.4 0.00015 35.2 4.0 30 484-517 31-61 (126)
219 2rn7_A IS629 ORFA; helix, all 67.8 3.5 0.00012 34.3 3.2 25 488-512 31-55 (108)
220 1okr_A MECI, methicillin resis 67.7 5.1 0.00017 33.6 4.3 43 465-510 5-51 (123)
221 1gdt_A GD resolvase, protein ( 67.6 5.1 0.00017 36.6 4.6 24 486-509 157-180 (183)
222 3f6o_A Probable transcriptiona 67.6 3.9 0.00013 34.7 3.5 49 461-517 8-57 (118)
223 2auw_A Hypothetical protein NE 67.6 5 0.00017 37.2 4.4 37 468-510 90-126 (170)
224 2jt1_A PEFI protein; solution 67.6 7.7 0.00026 31.1 5.0 26 392-417 22-47 (77)
225 2ek5_A Predicted transcription 67.4 5.3 0.00018 34.9 4.4 30 484-517 24-54 (129)
226 1z91_A Organic hydroperoxide r 67.3 4.4 0.00015 34.8 3.8 42 467-511 37-78 (147)
227 3jw4_A Transcriptional regulat 67.2 4.1 0.00014 35.2 3.7 50 460-510 29-80 (148)
228 1ft9_A Carbon monoxide oxidati 67.2 4.9 0.00017 37.0 4.4 28 487-518 163-190 (222)
229 3vk0_A NHTF, transcriptional r 67.2 4.8 0.00016 33.8 4.0 25 486-510 33-57 (114)
230 2r0q_C Putative transposon TN5 67.1 3.9 0.00013 38.3 3.7 32 473-509 166-197 (209)
231 3neu_A LIN1836 protein; struct 66.9 6.3 0.00022 34.0 4.8 29 485-517 34-63 (125)
232 3trb_A Virulence-associated pr 66.9 5.7 0.00019 33.3 4.4 25 486-510 26-50 (104)
233 1l9z_H Sigma factor SIGA; heli 66.8 74 0.0025 33.5 13.9 34 250-283 285-320 (438)
234 3kxa_A NGO0477 protein, putati 66.7 5.7 0.00019 35.2 4.5 25 486-510 80-104 (141)
235 2vn2_A DNAD, chromosome replic 66.6 6.8 0.00023 34.0 4.9 44 467-510 29-74 (128)
236 3e97_A Transcriptional regulat 66.4 5.2 0.00018 36.9 4.4 29 486-518 174-202 (231)
237 3rkx_A Biotin-[acetyl-COA-carb 66.3 5.9 0.0002 40.1 5.1 44 470-518 3-46 (323)
238 2hzt_A Putative HTH-type trans 66.1 5.8 0.0002 33.0 4.3 49 461-517 4-54 (107)
239 3mlf_A Transcriptional regulat 66.0 6.6 0.00023 33.1 4.6 25 486-510 35-59 (111)
240 1z4h_A TORI, TOR inhibition pr 65.8 4.7 0.00016 30.9 3.3 26 486-511 9-34 (66)
241 2wte_A CSA3; antiviral protein 65.8 12 0.00039 36.5 6.9 47 464-517 146-192 (244)
242 3kcc_A Catabolite gene activat 65.7 20 0.00069 33.9 8.6 28 487-518 217-244 (260)
243 4ev0_A Transcription regulator 65.5 12 0.0004 33.9 6.6 29 486-518 162-190 (216)
244 2k9s_A Arabinose operon regula 65.5 54 0.0018 26.7 10.9 37 381-417 6-43 (107)
245 2hwv_A DNA-binding response re 65.4 14 0.00048 31.6 6.7 50 467-517 43-97 (121)
246 2g9w_A Conserved hypothetical 65.3 7.9 0.00027 33.6 5.2 44 465-510 4-51 (138)
247 1lmb_3 Protein (lambda repress 65.2 4.3 0.00015 32.3 3.1 25 486-510 29-53 (92)
248 2pij_A Prophage PFL 6 CRO; tra 65.2 7.9 0.00027 28.9 4.5 22 486-508 13-34 (67)
249 2pg4_A Uncharacterized protein 65.1 6.1 0.00021 31.9 4.1 25 486-510 29-54 (95)
250 3op9_A PLI0006 protein; struct 64.8 6.3 0.00022 32.8 4.3 25 486-510 21-45 (114)
251 3e6c_C CPRK, cyclic nucleotide 64.7 26 0.00089 32.7 9.1 50 465-518 144-204 (250)
252 2fmy_A COOA, carbon monoxide o 64.7 5.6 0.00019 36.5 4.3 28 486-517 166-193 (220)
253 3d0s_A Transcriptional regulat 64.7 5.8 0.0002 36.5 4.4 28 486-517 176-203 (227)
254 3mky_B Protein SOPB; partition 64.4 9.8 0.00034 35.8 5.8 49 462-511 18-66 (189)
255 1rr7_A Middle operon regulator 64.4 10 0.00035 33.4 5.6 39 470-514 81-119 (129)
256 2fxa_A Protease production reg 64.3 12 0.00041 34.9 6.6 41 467-510 45-85 (207)
257 2y75_A HTH-type transcriptiona 64.2 7.2 0.00025 33.4 4.6 29 485-517 24-52 (129)
258 2k4j_A Putative transcriptiona 64.2 11 0.00039 31.9 5.8 50 467-517 41-95 (115)
259 2l8n_A Transcriptional repress 63.6 3.3 0.00011 32.3 2.0 23 487-509 9-31 (67)
260 1b0n_A Protein (SINR protein); 63.6 7.6 0.00026 31.8 4.5 25 486-510 13-37 (111)
261 2l49_A C protein; P2 bacteriop 63.6 6.5 0.00022 31.6 4.0 25 486-510 16-40 (99)
262 2ict_A Antitoxin HIGA; helix-t 63.5 5.9 0.0002 31.8 3.7 25 486-510 20-44 (94)
263 3ivp_A Putative transposon-rel 63.4 8.9 0.0003 32.5 5.0 25 486-510 24-48 (126)
264 3la7_A Global nitrogen regulat 63.3 20 0.0007 33.4 8.0 29 486-518 192-220 (243)
265 1rzs_A Antirepressor, regulato 63.2 3.1 0.00011 31.4 1.8 21 488-508 11-31 (61)
266 3dkw_A DNR protein; CRP-FNR, H 63.1 5.4 0.00018 36.6 3.8 29 486-518 177-205 (227)
267 1xn7_A Hypothetical protein YH 63.1 5.5 0.00019 32.0 3.4 25 486-510 15-39 (78)
268 1z7u_A Hypothetical protein EF 62.3 13 0.00043 31.2 5.7 49 461-517 12-62 (112)
269 1fx7_A Iron-dependent represso 62.2 3.6 0.00012 39.2 2.4 42 467-509 3-46 (230)
270 3fm5_A Transcriptional regulat 61.9 59 0.002 27.6 10.3 64 346-417 14-77 (150)
271 3qwg_A ESX-1 secretion-associa 61.8 5.5 0.00019 34.6 3.4 25 485-509 22-51 (123)
272 1hw1_A FADR, fatty acid metabo 61.5 7.8 0.00027 36.6 4.7 30 484-517 27-57 (239)
273 3c7j_A Transcriptional regulat 61.5 7.8 0.00027 37.1 4.7 30 484-517 46-75 (237)
274 1zyb_A Transcription regulator 60.8 6.3 0.00021 36.7 3.9 27 487-517 186-212 (232)
275 1sd4_A Penicillinase repressor 60.6 8.8 0.0003 32.3 4.4 43 466-511 6-52 (126)
276 3fym_A Putative uncharacterize 60.2 9 0.00031 33.2 4.5 26 486-511 15-40 (130)
277 1g2h_A Transcriptional regulat 60.2 8.6 0.00029 29.0 3.8 20 489-508 35-54 (61)
278 2h09_A Transcriptional regulat 60.1 7 0.00024 34.3 3.9 24 486-509 53-76 (155)
279 1r71_A Transcriptional repress 60.1 9.4 0.00032 35.5 4.8 41 466-509 34-74 (178)
280 2v79_A DNA replication protein 59.9 11 0.00036 33.4 5.0 47 467-513 29-77 (135)
281 3f52_A CLP gene regulator (CLG 59.6 6.9 0.00024 32.7 3.6 25 486-510 40-64 (117)
282 3sxy_A Transcriptional regulat 59.6 7.1 0.00024 36.5 4.0 38 475-518 25-62 (218)
283 3fx3_A Cyclic nucleotide-bindi 59.4 5 0.00017 37.2 2.9 28 486-517 177-204 (237)
284 2o0m_A Transcriptional regulat 59.1 2 6.7E-05 43.8 0.0 43 468-513 18-60 (345)
285 2kfs_A Conserved hypothetical 58.8 4.9 0.00017 36.4 2.6 25 486-510 30-54 (148)
286 3hrs_A Metalloregulator SCAR; 58.7 11 0.00038 35.5 5.2 39 475-517 7-46 (214)
287 1pdn_C Protein (PRD paired); p 58.7 40 0.0014 27.6 8.3 24 395-418 34-57 (128)
288 3r1f_A ESX-1 secretion-associa 58.5 6.7 0.00023 34.6 3.4 25 485-509 24-53 (135)
289 3cec_A Putative antidote prote 58.4 6.5 0.00022 32.2 3.1 25 486-510 30-54 (104)
290 3b73_A PHIH1 repressor-like pr 58.3 9.6 0.00033 32.6 4.3 40 468-510 11-52 (111)
291 2jvl_A TRMBF1; coactivator, he 58.2 8.8 0.0003 32.0 4.0 25 486-510 48-72 (107)
292 2ecc_A Homeobox and leucine zi 57.9 15 0.0005 29.5 5.0 51 468-518 10-61 (76)
293 1y6u_A XIS, excisionase from t 57.8 5.8 0.0002 31.3 2.5 25 486-510 15-39 (70)
294 3eco_A MEPR; mutlidrug efflux 57.8 40 0.0014 28.2 8.3 64 347-417 7-70 (139)
295 2cw1_A SN4M; lambda CRO fold, 57.8 7.2 0.00025 30.2 3.1 23 487-509 13-35 (65)
296 3nrv_A Putative transcriptiona 57.3 35 0.0012 29.0 7.9 73 333-417 4-77 (148)
297 1v4r_A Transcriptional repress 57.3 3.5 0.00012 34.1 1.2 30 484-517 31-61 (102)
298 3rjp_A COVR; winged helix-turn 57.2 22 0.00074 28.6 6.1 50 467-517 22-76 (96)
299 3bdn_A Lambda repressor; repre 57.2 7.1 0.00024 36.7 3.6 25 486-510 29-53 (236)
300 3lfp_A CSP231I C protein; tran 57.1 10 0.00036 30.6 4.2 25 486-510 13-41 (98)
301 2eby_A Putative HTH-type trans 56.8 9 0.00031 31.8 3.8 25 486-510 23-47 (113)
302 4ich_A Transcriptional regulat 56.6 6.8 0.00023 38.3 3.5 22 486-507 139-160 (311)
303 3f6v_A Possible transcriptiona 56.5 7.5 0.00026 34.8 3.4 41 469-517 57-97 (151)
304 2vz4_A Tipal, HTH-type transcr 56.0 6.5 0.00022 33.1 2.8 26 487-512 1-26 (108)
305 1j9i_A GPNU1 DBD;, terminase s 55.9 5.4 0.00019 30.6 2.1 24 488-511 3-26 (68)
306 2da4_A Hypothetical protein DK 55.6 29 0.001 27.3 6.5 51 468-518 15-70 (80)
307 2da1_A Alpha-fetoprotein enhan 55.5 18 0.00063 27.7 5.1 51 468-518 14-65 (70)
308 2pmu_A Response regulator PHOP 55.4 16 0.00054 30.5 5.1 50 467-517 34-88 (110)
309 2bnm_A Epoxidase; oxidoreducta 55.2 11 0.00038 34.3 4.5 25 486-510 22-46 (198)
310 3a03_A T-cell leukemia homeobo 55.2 21 0.00073 26.1 5.3 51 467-517 3-54 (56)
311 2di3_A Bacterial regulatory pr 54.9 12 0.00041 35.5 4.8 31 484-518 24-55 (239)
312 3lsg_A Two-component response 54.9 81 0.0028 25.3 10.8 31 387-417 11-42 (103)
313 2k9l_A RNA polymerase sigma fa 54.9 26 0.0009 27.6 6.1 56 454-516 15-73 (76)
314 1gxq_A PHOB, phosphate regulon 54.8 19 0.00063 29.7 5.4 50 467-517 31-85 (106)
315 2qq9_A Diphtheria toxin repres 54.5 5.5 0.00019 37.9 2.3 43 467-509 3-46 (226)
316 3oou_A LIN2118 protein; protei 54.5 19 0.00066 29.5 5.5 26 486-511 20-45 (108)
317 1bia_A BIRA bifunctional prote 54.4 16 0.00055 36.6 5.9 38 469-509 4-41 (321)
318 2k02_A Ferrous iron transport 54.4 5.4 0.00018 32.9 1.9 25 486-510 15-39 (87)
319 1y9q_A Transcriptional regulat 54.3 12 0.0004 34.1 4.4 25 486-510 23-47 (192)
320 2bgc_A PRFA; bacterial infecti 54.1 8.4 0.00029 35.9 3.5 27 487-517 169-196 (238)
321 3mn2_A Probable ARAC family tr 53.9 18 0.00061 29.7 5.2 26 486-511 17-42 (108)
322 3bro_A Transcriptional regulat 53.8 54 0.0019 27.3 8.5 64 347-417 10-73 (141)
323 3lsg_A Two-component response 53.6 20 0.00068 29.1 5.4 25 487-511 19-43 (103)
324 1vz0_A PARB, chromosome partit 53.6 15 0.00052 35.2 5.3 41 466-509 116-156 (230)
325 3oou_A LIN2118 protein; protei 53.5 89 0.003 25.3 12.6 35 383-417 10-44 (108)
326 1k78_A Paired box protein PAX5 53.5 56 0.0019 28.1 8.7 24 395-418 49-72 (149)
327 3deu_A Transcriptional regulat 53.3 77 0.0026 27.8 9.7 64 346-417 28-91 (166)
328 1opc_A OMPR, OMPRC; transcript 52.9 11 0.00039 31.2 3.8 49 467-516 31-84 (110)
329 1yz8_P Pituitary homeobox 2; D 52.8 42 0.0014 25.5 6.8 54 467-520 9-63 (68)
330 2hs5_A Putative transcriptiona 52.6 11 0.00036 36.1 4.0 38 474-517 40-77 (239)
331 4bbr_M Transcription initiatio 52.6 24 0.00082 36.0 6.9 36 486-521 291-326 (345)
332 3edp_A LIN2111 protein; APC883 52.2 13 0.00045 35.5 4.6 29 485-517 30-59 (236)
333 3e7l_A Transcriptional regulat 52.0 15 0.00051 27.7 4.0 35 472-509 20-54 (63)
334 1bl0_A Protein (multiple antib 51.9 88 0.003 26.4 9.5 36 382-417 15-50 (129)
335 4aik_A Transcriptional regulat 51.8 1.1E+02 0.0037 26.6 10.3 27 391-417 43-69 (151)
336 1p4x_A Staphylococcal accessor 51.7 19 0.00066 34.9 5.7 43 467-510 155-197 (250)
337 3uj3_X DNA-invertase; helix-tu 51.6 3.1 0.00011 38.5 0.0 34 473-511 149-182 (193)
338 2p8t_A Hypothetical protein PH 51.6 18 0.00061 34.3 5.2 46 466-517 11-56 (200)
339 3ihu_A Transcriptional regulat 51.4 12 0.0004 35.1 4.0 37 475-517 29-65 (222)
340 1stz_A Heat-inducible transcri 51.3 17 0.00057 37.0 5.4 42 468-509 15-60 (338)
341 3pvv_A Chromosomal replication 51.3 42 0.0014 28.1 7.1 31 486-520 49-79 (101)
342 2wv0_A YVOA, HTH-type transcri 51.1 15 0.0005 35.3 4.8 30 484-517 30-60 (243)
343 4a0z_A Transcription factor FA 50.9 17 0.00057 34.0 4.9 36 470-508 12-47 (190)
344 3f8m_A GNTR-family protein tra 50.5 21 0.00072 34.4 5.8 32 482-517 30-62 (248)
345 3bwg_A Uncharacterized HTH-typ 50.3 15 0.0005 35.2 4.6 30 484-517 25-55 (239)
346 1ahd_P Antennapedia protein mu 50.1 47 0.0016 25.3 6.7 53 468-520 9-62 (68)
347 3k2a_A Homeobox protein MEIS2; 49.8 31 0.0011 26.4 5.6 54 467-520 4-61 (67)
348 2p5t_A Putative transcriptiona 49.5 3.5 0.00012 36.8 0.0 25 486-510 13-37 (158)
349 2jml_A DNA binding domain/tran 49.1 9.9 0.00034 30.1 2.7 24 487-510 5-28 (81)
350 2dmq_A LIM/homeobox protein LH 49.1 29 0.001 27.2 5.5 53 468-520 14-67 (80)
351 2dmn_A Homeobox protein TGIF2L 49.1 44 0.0015 26.6 6.6 55 468-522 14-72 (83)
352 3dn7_A Cyclic nucleotide bindi 49.1 7.9 0.00027 34.6 2.3 25 486-510 167-191 (194)
353 3rqi_A Response regulator prot 49.0 9.2 0.00032 34.1 2.8 39 467-508 139-177 (184)
354 3lwf_A LIN1550 protein, putati 48.8 27 0.00094 31.5 5.9 47 467-517 21-70 (159)
355 3oop_A LIN2960 protein; protei 48.5 63 0.0022 27.1 8.1 62 347-417 13-74 (143)
356 1hkq_A REPA, replication prote 48.3 39 0.0013 29.3 6.7 58 460-517 11-77 (132)
357 2e1o_A Homeobox protein PRH; D 48.2 28 0.00096 26.7 5.1 53 468-520 14-67 (70)
358 1r8d_A Transcription activator 48.1 8.1 0.00028 32.5 2.1 25 488-512 3-27 (109)
359 2fa5_A Transcriptional regulat 48.0 1E+02 0.0034 26.4 9.5 24 394-417 63-86 (162)
360 3zq7_A KDP operon transcriptio 47.9 28 0.00095 28.3 5.4 50 467-517 28-82 (102)
361 2jzy_A Transcriptional regulat 47.9 16 0.00056 30.6 4.0 49 467-516 28-81 (112)
362 1ig7_A Homeotic protein MSX-1; 47.8 29 0.001 25.3 5.0 50 468-517 7-57 (58)
363 3eet_A Putative GNTR-family tr 47.7 17 0.00059 35.5 4.7 29 485-517 50-79 (272)
364 1x2n_A Homeobox protein pknox1 47.6 20 0.00068 27.7 4.2 55 467-521 13-71 (73)
365 2ofy_A Putative XRE-family tra 47.4 12 0.00041 29.2 2.9 22 489-510 29-50 (86)
366 2oa4_A SIR5; structure, struct 47.3 6.5 0.00022 33.4 1.3 35 474-512 41-75 (101)
367 2f2e_A PA1607; transcription f 47.2 23 0.0008 31.1 5.1 24 486-509 36-59 (146)
368 1jgg_A Segmentation protein EV 47.2 31 0.0011 25.5 5.1 50 468-517 8-58 (60)
369 1ylf_A RRF2 family protein; st 47.2 24 0.00081 31.2 5.2 30 484-517 27-56 (149)
370 2dmu_A Homeobox protein goosec 47.2 27 0.00091 26.7 4.8 52 468-519 14-66 (70)
371 1mkm_A ICLR transcriptional re 47.1 17 0.0006 34.7 4.6 25 485-509 21-45 (249)
372 1puf_B PRE-B-cell leukemia tra 47.0 33 0.0011 26.4 5.4 57 467-523 7-67 (73)
373 2xrn_A HTH-type transcriptiona 46.9 16 0.00054 35.0 4.2 25 485-509 19-43 (241)
374 2l1p_A DNA-binding protein SAT 46.9 12 0.00041 30.6 2.8 24 487-510 32-55 (83)
375 1rp3_A RNA polymerase sigma fa 46.7 1.7E+02 0.0057 26.5 14.6 36 250-285 100-135 (239)
376 2fbh_A Transcriptional regulat 46.6 1.3E+02 0.0043 25.1 10.1 62 348-417 14-75 (146)
377 1o5l_A Transcriptional regulat 46.2 11 0.00036 34.6 2.8 28 486-517 163-190 (213)
378 2g7u_A Transcriptional regulat 46.2 25 0.00085 33.9 5.5 25 485-509 27-51 (257)
379 2fsw_A PG_0823 protein; alpha- 46.1 14 0.00047 30.6 3.2 43 463-509 17-61 (107)
380 3plo_X DNA-invertase; resolvas 44.9 4.6 0.00016 37.4 0.0 28 486-513 157-184 (193)
381 3t8r_A Staphylococcus aureus C 44.6 25 0.00087 30.9 4.9 29 485-517 26-54 (143)
382 2hdd_A Protein (engrailed home 44.5 29 0.001 25.7 4.6 51 467-517 9-60 (61)
383 3nau_A Zinc fingers and homeob 44.5 39 0.0013 26.4 5.3 51 469-519 12-63 (66)
384 2h8r_A Hepatocyte nuclear fact 44.4 36 0.0012 32.8 6.2 25 486-510 43-67 (221)
385 1b72_B Protein (PBX1); homeodo 44.1 33 0.0011 27.4 5.1 56 467-522 7-66 (87)
386 3e6m_A MARR family transcripti 44.1 71 0.0024 27.6 7.8 63 346-417 28-90 (161)
387 1ntc_A Protein (nitrogen regul 44.0 16 0.00056 29.6 3.3 37 470-509 50-86 (91)
388 2h1k_A IPF-1, pancreatic and d 43.7 40 0.0014 25.2 5.3 51 468-518 10-61 (63)
389 2k27_A Paired box protein PAX- 43.6 1.1E+02 0.0036 26.7 9.0 25 395-419 42-66 (159)
390 1ic8_A Hepatocyte nuclear fact 43.5 40 0.0014 31.7 6.3 24 486-509 42-65 (194)
391 1xmk_A Double-stranded RNA-spe 43.4 29 0.001 27.9 4.6 24 394-417 25-49 (79)
392 2cue_A Paired box protein PAX6 43.4 42 0.0014 26.4 5.6 53 467-519 13-66 (80)
393 1zq3_P PRD-4, homeotic bicoid 43.2 52 0.0018 24.9 6.0 54 467-520 8-62 (68)
394 1k61_A Mating-type protein alp 43.1 87 0.003 22.9 7.1 51 467-517 4-58 (60)
395 2k9s_A Arabinose operon regula 43.1 54 0.0019 26.6 6.5 26 486-511 19-44 (107)
396 2o0y_A Transcriptional regulat 42.8 25 0.00084 34.0 4.9 25 485-509 36-60 (260)
397 1b72_A Protein (homeobox prote 42.6 47 0.0016 27.2 6.0 54 467-520 40-94 (97)
398 3a02_A Homeobox protein arista 42.5 37 0.0013 25.1 4.8 51 467-517 5-56 (60)
399 2obp_A Putative DNA-binding pr 42.4 53 0.0018 27.3 6.2 44 466-509 12-58 (96)
400 1nk2_P Homeobox protein VND; h 42.4 41 0.0014 26.2 5.3 54 468-521 16-70 (77)
401 1hqc_A RUVB; extended AAA-ATPa 42.4 28 0.00096 33.7 5.3 44 467-510 244-287 (324)
402 2jrt_A Uncharacterized protein 42.1 33 0.0011 28.5 4.9 26 486-511 48-73 (95)
403 2p4w_A Transcriptional regulat 42.0 25 0.00087 32.9 4.7 46 464-517 8-54 (202)
404 2k40_A Homeobox expressed in E 41.9 45 0.0016 25.1 5.4 53 467-519 7-60 (67)
405 2k9m_A RNA polymerase sigma fa 41.9 68 0.0023 28.0 7.2 48 466-517 15-65 (130)
406 1jgs_A Multiple antibiotic res 41.6 87 0.003 25.9 7.8 63 346-417 9-71 (138)
407 2k4b_A Transcriptional regulat 41.3 8.8 0.0003 32.1 1.2 45 463-510 28-76 (99)
408 3k2z_A LEXA repressor; winged 41.3 46 0.0016 30.5 6.3 35 382-416 12-46 (196)
409 1q06_A Transcriptional regulat 41.2 13 0.00043 32.7 2.3 25 488-512 1-25 (135)
410 1yyv_A Putative transcriptiona 40.9 27 0.00093 30.2 4.5 24 486-509 47-71 (131)
411 2rdp_A Putative transcriptiona 40.9 1.2E+02 0.0041 25.5 8.7 24 394-417 56-79 (150)
412 3bpv_A Transcriptional regulat 40.6 91 0.0031 25.8 7.7 62 347-417 5-66 (138)
413 4dyq_A Gene 1 protein; GP1, oc 40.5 23 0.00078 31.1 3.9 34 474-511 19-53 (140)
414 1akh_A Protein (mating-type pr 40.5 28 0.00097 25.7 3.9 48 467-514 11-59 (61)
415 2fjr_A Repressor protein CI; g 40.4 24 0.00083 31.7 4.2 22 489-510 22-43 (189)
416 3knw_A Putative transcriptiona 40.2 1.8E+02 0.0063 25.2 10.7 79 260-338 28-108 (212)
417 3tgn_A ADC operon repressor AD 40.1 34 0.0012 28.9 4.9 23 395-417 52-74 (146)
418 3mkl_A HTH-type transcriptiona 39.8 28 0.00095 29.2 4.2 25 486-510 22-46 (120)
419 3oio_A Transcriptional regulat 39.8 73 0.0025 26.1 6.9 46 306-351 14-59 (113)
420 2ia2_A Putative transcriptiona 39.7 35 0.0012 33.0 5.5 26 484-509 33-58 (265)
421 2qlz_A Transcription factor PF 39.4 49 0.0017 31.8 6.4 24 486-509 177-200 (232)
422 3gbg_A TCP pilus virulence reg 39.1 2.3E+02 0.008 26.5 11.3 77 379-500 170-246 (276)
423 1fjl_A Paired protein; DNA-bin 39.1 48 0.0016 26.1 5.3 52 468-519 25-77 (81)
424 2htj_A P fimbrial regulatory p 39.0 39 0.0013 26.2 4.8 24 394-417 14-37 (81)
425 3rkq_A Homeobox protein NKX-2. 38.9 42 0.0014 24.2 4.6 48 468-515 9-57 (58)
426 3hh0_A Transcriptional regulat 38.8 15 0.00051 32.8 2.4 27 486-512 3-29 (146)
427 1xn7_A Hypothetical protein YH 38.8 43 0.0015 26.7 4.9 24 394-417 16-39 (78)
428 1ftt_A TTF-1 HD, thyroid trans 38.7 47 0.0016 25.2 5.0 53 468-520 9-62 (68)
429 1umq_A Photosynthetic apparatu 38.5 24 0.00084 28.4 3.4 21 488-508 55-75 (81)
430 2ovg_A Phage lambda CRO; trans 38.2 26 0.00088 27.1 3.4 20 489-508 15-34 (66)
431 3t72_q RNA polymerase sigma fa 38.1 95 0.0032 25.7 7.2 26 393-418 38-63 (99)
432 3jw4_A Transcriptional regulat 37.9 60 0.002 27.6 6.2 64 347-417 17-80 (148)
433 2da2_A Alpha-fetoprotein enhan 37.6 20 0.00068 27.4 2.7 51 468-518 14-65 (70)
434 1iuf_A Centromere ABP1 protein 37.0 16 0.00055 32.2 2.3 43 467-511 11-60 (144)
435 1d5y_A ROB transcription facto 36.9 74 0.0025 30.3 7.4 33 253-285 7-39 (292)
436 2gqq_A Leucine-responsive regu 36.8 3.5 0.00012 37.1 -2.2 44 468-518 11-54 (163)
437 1uhs_A HOP, homeodomain only p 36.7 88 0.003 23.9 6.4 52 468-519 8-61 (72)
438 2dms_A Homeobox protein OTX2; 36.5 40 0.0014 26.5 4.4 53 468-520 14-67 (80)
439 3lfp_A CSP231I C protein; tran 36.4 68 0.0023 25.5 6.0 70 394-476 14-89 (98)
440 1bl0_A Protein (multiple antib 36.3 28 0.00096 29.6 3.7 26 486-511 26-51 (129)
441 1z6r_A MLC protein; transcript 36.1 47 0.0016 33.8 6.1 38 473-513 19-56 (406)
442 3r4k_A Transcriptional regulat 35.9 24 0.00083 34.1 3.6 24 485-508 19-42 (260)
443 3bja_A Transcriptional regulat 35.8 77 0.0026 26.2 6.5 24 394-417 47-70 (139)
444 2z9m_A Response regulator YYCF 35.8 61 0.0021 27.2 5.8 50 467-517 36-90 (120)
445 1b0n_A Protein (SINR protein); 35.7 24 0.00082 28.7 3.1 24 394-417 14-37 (111)
446 1lva_A Selenocysteine-specific 35.7 2.8E+02 0.0096 26.5 11.3 114 291-417 62-180 (258)
447 3k0l_A Repressor protein; heli 35.7 88 0.003 27.0 7.1 64 345-417 20-83 (162)
448 2da3_A Alpha-fetoprotein enhan 35.2 33 0.0011 26.8 3.7 51 468-518 24-75 (80)
449 2lnb_A Z-DNA-binding protein 1 35.2 33 0.0011 27.8 3.6 30 485-518 32-61 (80)
450 1lj9_A Transcriptional regulat 35.1 1.2E+02 0.0042 25.2 7.7 62 347-417 5-66 (144)
451 3mkl_A HTH-type transcriptiona 35.0 71 0.0024 26.5 6.1 45 306-351 14-58 (120)
452 1u8b_A ADA polyprotein; protei 34.8 69 0.0023 27.2 6.1 25 486-510 92-116 (133)
453 2nnn_A Probable transcriptiona 34.8 1.5E+02 0.0052 24.3 8.3 62 346-417 14-75 (140)
454 3hot_A Transposable element ma 34.6 33 0.0011 33.8 4.5 36 472-511 11-53 (345)
455 1puf_A HOX-1.7, homeobox prote 34.5 57 0.0019 25.4 5.0 52 468-519 20-72 (77)
456 3df8_A Possible HXLR family tr 34.4 36 0.0012 28.4 4.1 24 486-509 39-65 (111)
457 2gxg_A 146AA long hypothetical 34.3 1.4E+02 0.0049 24.8 8.0 24 394-417 50-73 (146)
458 2yu3_A DNA-directed RNA polyme 34.3 51 0.0018 27.4 4.9 47 465-516 32-78 (95)
459 3bj6_A Transcriptional regulat 34.2 1.3E+02 0.0044 25.3 7.8 24 394-417 54-77 (152)
460 1hsj_A Fusion protein consisti 34.0 40 0.0014 34.9 5.2 52 458-510 390-443 (487)
461 3gpv_A Transcriptional regulat 34.0 16 0.00056 32.5 1.9 26 487-512 16-41 (148)
462 2zhg_A Redox-sensitive transcr 34.0 19 0.00066 32.3 2.4 27 486-512 10-36 (154)
463 2hi3_A Homeodomain-only protei 33.9 99 0.0034 23.7 6.3 53 468-520 9-63 (73)
464 3s2w_A Transcriptional regulat 33.9 1.1E+02 0.0036 26.3 7.3 64 345-417 24-87 (159)
465 3mq0_A Transcriptional repress 33.9 20 0.00069 35.0 2.7 24 485-508 43-66 (275)
466 2dmt_A Homeobox protein BARH-l 33.6 28 0.00096 27.4 3.0 51 468-518 24-75 (80)
467 2hqn_A Putative transcriptiona 33.4 14 0.00049 30.5 1.3 50 467-517 29-83 (109)
468 2pjp_A Selenocysteine-specific 33.3 71 0.0024 27.0 5.8 25 486-510 19-43 (121)
469 3g3z_A NMB1585, transcriptiona 33.3 2E+02 0.0068 23.9 8.9 24 394-417 45-68 (145)
470 2dn0_A Zinc fingers and homeob 33.1 46 0.0016 25.9 4.2 51 468-518 15-66 (76)
471 1b8i_A Ultrabithorax, protein 33.0 42 0.0014 26.5 4.0 52 467-518 26-78 (81)
472 3k69_A Putative transcription 32.8 31 0.001 31.2 3.5 29 485-517 26-54 (162)
473 2cra_A Homeobox protein HOX-B1 32.7 22 0.00077 27.2 2.3 50 468-517 14-64 (70)
474 3pxp_A Helix-turn-helix domain 32.5 30 0.001 34.5 3.7 25 486-510 24-48 (292)
475 3cta_A Riboflavin kinase; stru 32.3 25 0.00085 33.1 3.0 28 483-510 23-50 (230)
476 1s3j_A YUSO protein; structura 32.3 1.3E+02 0.0044 25.4 7.5 24 394-417 51-74 (155)
477 2ly9_A Zinc fingers and homeob 32.1 36 0.0012 26.3 3.4 54 468-521 13-67 (74)
478 1eto_A FIS, factor for inversi 32.0 46 0.0016 27.6 4.2 22 488-509 72-93 (98)
479 2dmp_A Zinc fingers and homeob 32.0 53 0.0018 26.5 4.5 52 467-518 19-71 (89)
480 2k02_A Ferrous iron transport 31.1 49 0.0017 27.1 4.1 24 394-417 16-39 (87)
481 3ivp_A Putative transposon-rel 31.0 93 0.0032 25.9 6.2 79 394-479 25-105 (126)
482 2r5y_A Homeotic protein sex co 31.0 65 0.0022 25.8 4.9 52 466-517 33-85 (88)
483 3ech_A MEXR, multidrug resista 30.6 2E+02 0.0068 23.9 8.4 24 394-417 51-74 (142)
484 2a61_A Transcriptional regulat 30.5 1.1E+02 0.0038 25.4 6.7 24 394-417 47-70 (145)
485 2a6h_F RNA polymerase sigma fa 30.4 3.1E+02 0.011 28.3 11.3 33 250-282 270-304 (423)
486 2hr3_A Probable transcriptiona 30.3 2.1E+02 0.0073 23.7 8.5 24 394-417 50-73 (147)
487 3cjn_A Transcriptional regulat 30.3 1.2E+02 0.004 26.0 6.9 62 347-417 28-89 (162)
488 3iuo_A ATP-dependent DNA helic 30.3 68 0.0023 27.5 5.2 27 486-512 31-57 (122)
489 1mnm_C Protein (MAT alpha-2 tr 30.1 58 0.002 26.0 4.5 50 467-516 33-86 (87)
490 3u1d_A Uncharacterized protein 29.9 72 0.0025 28.8 5.4 45 463-508 21-67 (151)
491 2m0c_A Homeobox protein arista 29.9 61 0.0021 24.8 4.4 51 468-518 16-67 (75)
492 2fbk_A Transcriptional regulat 29.5 70 0.0024 28.4 5.4 22 395-416 87-108 (181)
493 2da5_A Zinc fingers and homeob 29.5 55 0.0019 25.4 4.1 51 468-518 14-65 (75)
494 1x3u_A Transcriptional regulat 29.4 1.1E+02 0.0037 23.1 5.8 27 392-418 29-55 (79)
495 4a5n_A Uncharacterized HTH-typ 29.2 49 0.0017 28.9 4.1 45 461-508 16-61 (131)
496 1ku3_A Sigma factor SIGA; heli 28.9 54 0.0019 24.8 3.9 25 393-417 29-53 (73)
497 2p7v_B Sigma-70, RNA polymeras 28.6 57 0.0019 24.3 3.9 26 393-418 24-49 (68)
498 1z05_A Transcriptional regulat 28.4 55 0.0019 33.7 5.0 38 473-513 42-79 (429)
499 1zs4_A Regulatory protein CII; 28.1 57 0.002 26.6 4.0 35 486-520 23-57 (83)
500 3egq_A TETR family transcripti 27.8 53 0.0018 28.0 4.1 23 486-508 23-45 (170)
No 1
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=100.00 E-value=3.1e-55 Score=467.94 Aligned_cols=315 Identities=31% Similarity=0.569 Sum_probs=284.6
Q ss_pred CCChHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH------------------HHHhhhCCCCcHHHHHH---
Q 009567 215 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKS------------------KLQSQFGREPTLIEWAK--- 273 (532)
Q Consensus 215 ~~~d~l~~yl~~i~~~~lLT~eEE~eL~~~iq~~~~le~~~~------------------~l~~~~g~~pt~~ewA~--- 273 (532)
...|+++.||++|+++|+||++||++|+++|+.++.++.... ......|+.|+..+|+.
T Consensus 91 ~~~d~~~~Yl~ei~~~pLLt~eEE~~La~~i~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (438)
T 1l9z_H 91 STSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKT 170 (438)
T ss_pred CCCChHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhHHHHHHhhhccchhhhhhhhhhhhhhcccccccccccccccchh
Confidence 356899999999999999999999999999998754432211 11223567788888743
Q ss_pred ---------HccCCHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCCHhhHHHHHHHHHHHhhhhhCCcCCCch
Q 009567 274 ---------AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRF 344 (532)
Q Consensus 274 ---------aag~~~~~L~~~l~~g~~Are~LI~~nlrLV~sIAkrY~~~g~~~eDLiQEG~iGLikAiekFDp~kG~rF 344 (532)
+.|++...|...+++|..|++.||.+|+++|++||++|.++|.+++|||||||||||+|+++|||++|++|
T Consensus 171 ~~~~~~~~~~~~~~~~eLi~~~~~d~~A~~~Li~~nlrlVv~iA~ry~~~g~~aeDLIQEg~IgL~kAvekFDp~kG~rF 250 (438)
T 1l9z_H 171 VEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKF 250 (438)
T ss_pred hhhhhhhhhcccchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCh
Confidence 23566788889999899999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhC--CCHHHHHHHHHhcCCCc
Q 009567 345 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVG--ITVEKLERLIFITRMPL 422 (532)
Q Consensus 345 STYA~~wIr~aI~~~ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lg--is~e~v~~ll~~~~~~i 422 (532)
+|||+||||+.|.+++++++|++|+|.|+...+++++++.+.+.+.+||.|+.++||..+| +++++|..++......+
T Consensus 251 sTYA~~wIR~~I~~~i~~~~R~irlp~~~~~~l~~lrr~~r~l~~~lgr~pt~eeiA~~l~~~v~~e~V~~~~~~~~~~~ 330 (438)
T 1l9z_H 251 STYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPV 330 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999998888899
Q ss_pred ccCCCCCCCCCcchhhhcccCCCCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHH
Q 009567 423 SMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKE 502 (532)
Q Consensus 423 SLD~~v~~d~~~~l~d~i~d~~~~~pee~~~~~~l~~~L~~~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISre 502 (532)
|+|.+++++++..+.+.+++....+|++.+....+...|..+|..||++||.||.+||||+|++++|++|||+.||||++
T Consensus 331 SLd~~~~~d~d~~l~d~l~d~~~~~pee~~~~~~~~~~L~~aL~~L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~e 410 (438)
T 1l9z_H 331 SLETPIGDEKDSFYGDFIPDENLPSPVEAAAQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRE 410 (438)
T ss_pred ccccccccccchhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHH
Confidence 99999987776678888887666678888888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHhhcCchhhhhh
Q 009567 503 RVRQLESRALYRLK-QSLGGKASYGYAD 529 (532)
Q Consensus 503 rVRqie~rALkKLR-~~l~~~~l~~yld 529 (532)
||||++++|++||| ..+....+++|++
T Consensus 411 rVRqi~~RAlkKLR~~~~~~~~l~~yl~ 438 (438)
T 1l9z_H 411 RIRQIENKALRKLKYHESRTRKLRDFLE 438 (438)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHhhC
Confidence 99999999999999 7888888999874
No 2
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=100.00 E-value=1.8e-55 Score=469.60 Aligned_cols=311 Identities=33% Similarity=0.589 Sum_probs=276.6
Q ss_pred CChHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------hhCCCCcHHH----
Q 009567 216 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS---------------------QFGREPTLIE---- 270 (532)
Q Consensus 216 ~~d~l~~yl~~i~~~~lLT~eEE~eL~~~iq~~~~le~~~~~l~~---------------------~~g~~pt~~e---- 270 (532)
..|+++.||++|+++|+||++||++|+++|+.+..+.. .|.. ..|+.|+..+
T Consensus 77 ~~d~~~~Yl~ei~~~plLt~eEE~~La~ri~~g~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (423)
T 2a6h_F 77 TSDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIK---KLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDP 153 (423)
T ss_dssp THHHHHHHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHCCHHHHHTTSCSSSCTT
T ss_pred CCcHHHHHHHHhcccCCCCHHHHHHHHHHHHhchhHHH---HHHHhhccchhhhhhhHhhhhhhhhhcccccchhhhhhh
Confidence 46899999999999999999999999999998653322 2222 2234555443
Q ss_pred -----HHH---HccCCHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCCHhhHHHHHHHHHHHhhhhhCCcCCC
Q 009567 271 -----WAK---AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 342 (532)
Q Consensus 271 -----wA~---aag~~~~~L~~~l~~g~~Are~LI~~nlrLV~sIAkrY~~~g~~~eDLiQEG~iGLikAiekFDp~kG~ 342 (532)
|+. ++++++..|...+++|..|++.||.+|+++|++||++|.++|.+++|||||||+|||+|+++|||++|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~Li~~~lrlV~~iA~~y~~~~~~~eDLiQEg~igL~kav~kFd~~~g~ 233 (423)
T 2a6h_F 154 KTVEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRF 233 (423)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCTTTSCHHHHHHHHHHHHHHHHHHCCTTSCC
T ss_pred hhhhhhhhhhhcccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 332 346778889999998899999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhC--CCHHHHHHHHHhcCC
Q 009567 343 RFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVG--ITVEKLERLIFITRM 420 (532)
Q Consensus 343 rFSTYA~~wIr~aI~~~ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lg--is~e~v~~ll~~~~~ 420 (532)
+|+|||+||||+.|.+++++++|+||+|.|+...+++++++.+.+.+.+||.|+.++||..+| +++++|..++.....
T Consensus 234 ~FstYa~~wIr~~i~~~i~~~~r~ir~p~~~~~~~~~lrr~~~~l~~~~~r~p~~~eiA~~l~~~~~~~~v~~~~~~~~~ 313 (423)
T 2a6h_F 234 KFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQE 313 (423)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHCTTCCHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHHHHccceeeccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999999999999 999999999998889
Q ss_pred CcccCCCCCCCCCcchhhhcccCCCCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCC
Q 009567 421 PLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLS 500 (532)
Q Consensus 421 ~iSLD~~v~~d~~~~l~d~i~d~~~~~pee~~~~~~l~~~L~~~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgIS 500 (532)
++|+|.+++++++..+.+++++....+|++.+....+...|..+|..||++||.||.+||||+||+++|++|||+.||||
T Consensus 314 ~~Sld~~~~~~~~~~l~d~l~d~~~~~pe~~~~~~~~~~~L~~aL~~L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~lgiS 393 (423)
T 2a6h_F 314 PVSLETPIGDEKDSFYGDFIPDEHLPSPVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVT 393 (423)
T ss_dssp CEESSCBCSSSSSCBGGGSSCCSSSCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCC-----CHHHHSSSSC
T ss_pred CcccccccCCCCccchhhhhccccCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhccCCCCCCCHHHHHHHHCcC
Confidence 99999999877777888888887666888888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhhcCchhhhhh
Q 009567 501 KERVRQLESRALYRLK-QSLGGKASYGYAD 529 (532)
Q Consensus 501 rerVRqie~rALkKLR-~~l~~~~l~~yld 529 (532)
++||||++.+|++||| ..+....|++|++
T Consensus 394 ~erVrqi~~rAl~kLR~~~~~~~~l~~~l~ 423 (423)
T 2a6h_F 394 RERIRQIENKALRKLKYHESRTRKLRDFLD 423 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSSCCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHhhC
Confidence 9999999999999999 8888888998874
No 3
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=100.00 E-value=3.7e-42 Score=382.46 Aligned_cols=251 Identities=34% Similarity=0.671 Sum_probs=237.1
Q ss_pred HHHHHHHHhhcH-HH---HHHHHHHHHHHHHHHHHHhhCCCCCHhhHHHHHHHHHHHhhhhhCCcCCCchhhHHHHHHHH
Q 009567 279 CRDLKSELHSGN-SS---REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 354 (532)
Q Consensus 279 ~~~L~~~l~~g~-~A---re~LI~~nlrLV~sIAkrY~~~g~~~eDLiQEG~iGLikAiekFDp~kG~rFSTYA~~wIr~ 354 (532)
...|...++.|+ .| ++.||..|+++|+++|++|.+++.+++||+||||+|||+++++||+.+|++|+||++||||+
T Consensus 358 ~~~Li~~~~~Gd~~A~~A~~~L~~~y~~~v~~ia~r~~~~~~~aeDlvQE~fi~l~~a~~~fd~~~g~~Fstyl~~~irn 437 (613)
T 3iyd_F 358 VKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 437 (613)
T ss_dssp HHHHHHTHHHHHHHHHHHHTTTTTTTTHHHHHGGGSSSTTSSCSTTTTHHHHHHHHHHTTSCCTTSSSCSTTTHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCccccCcHHHHHHHHHHH
Confidence 456777777776 66 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCCc
Q 009567 355 TIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 434 (532)
Q Consensus 355 aI~~~ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~iSLD~~v~~d~~~ 434 (532)
.|.++++++.+.+|+|.|+...+++++++...+.+++||.||.+|||+.+|++++++..++.....++|++.+++++++.
T Consensus 438 ~i~~~lr~~~r~~rip~~~~~~~~k~~r~~~~l~~~~gr~pt~eela~~l~~~~~~v~~~~~~~~~~~sld~~~~~~~~~ 517 (613)
T 3iyd_F 438 AITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDS 517 (613)
T ss_dssp HHHHHTTTSCSSSCCCSHHHHTTTTTTTTTTTTTTTTCSCCCTTTTTTTSSCCSSHHHHHHHHSCCCCCSSCCCSSSSSC
T ss_pred HHHHHHHhcCcceeCcHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhccCCcccCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred chhhhcccCCCCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 009567 435 TFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYR 514 (532)
Q Consensus 435 ~l~d~i~d~~~~~pee~~~~~~l~~~L~~~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkK 514 (532)
.+.+.+.+....+|++.+...++...|..+|..||+++|.||.||||+++++++|++|||+.||||++||++++++|+++
T Consensus 518 ~l~d~i~d~~~~~p~~~~~~~e~~~~l~~aL~~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~k 597 (613)
T 3iyd_F 518 HLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK 597 (613)
T ss_dssp CGGGSCCCSSSCCHHHHHHHHTTSSSHHHHTTSSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTT
T ss_pred cHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 88888888777789998888888888999999999999999999999998899999999999999999999999999999
Q ss_pred HHHHhhcCchhhhhh
Q 009567 515 LKQSLGGKASYGYAD 529 (532)
Q Consensus 515 LR~~l~~~~l~~yld 529 (532)
||+++....++.|+|
T Consensus 598 LR~~~~~~~l~~~l~ 612 (613)
T 3iyd_F 598 LRHPSRSEVLRSFLD 612 (613)
T ss_dssp TTSCSSSCSSTTCC-
T ss_pred hhCcchhhHHHHHhc
Confidence 999999999999986
No 4
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=100.00 E-value=1.6e-36 Score=301.73 Aligned_cols=209 Identities=33% Similarity=0.577 Sum_probs=132.1
Q ss_pred CChHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHH--h-----------------------hhCCCCcHH
Q 009567 216 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIR-LEKEKSKLQ--S-----------------------QFGREPTLI 269 (532)
Q Consensus 216 ~~d~l~~yl~~i~~~~lLT~eEE~eL~~~iq~~~~-le~~~~~l~--~-----------------------~~g~~pt~~ 269 (532)
..|+++.||++|+++||||++||++|+++|+.++. .+.+..... . ..+.+|+..
T Consensus 5 ~~d~~~~yl~~i~~~~llt~~~e~~la~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~g~~~~~~~~~~ 84 (245)
T 3ugo_A 5 TSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTV 84 (245)
T ss_dssp CCHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTGGGCSCCCCTTCCCCCCHHHH
T ss_pred CCCcHHHHHHHcccccCCCHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHhhhhhhhccchhcccccccccccchhH
Confidence 47999999999999999999999999999999764 333322110 0 024689999
Q ss_pred HHHHHccCCH----HHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCCHhhHHHHHHHHHHHhhhhhCCcCCCchh
Q 009567 270 EWAKAIGLSC----RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 345 (532)
Q Consensus 270 ewA~aag~~~----~~L~~~l~~g~~Are~LI~~nlrLV~sIAkrY~~~g~~~eDLiQEG~iGLikAiekFDp~kG~rFS 345 (532)
+||.+.|++. ..|...+++|..|++.||..|.++|+++|++|.+++.+++||+||||+|||+++++|||++|++|+
T Consensus 85 ~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~L~~~y~~lV~~ia~r~~~~~~~aeDLvQegfi~L~~a~~~fd~~~g~~F~ 164 (245)
T 3ugo_A 85 EEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFS 164 (245)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHGGGTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHH
T ss_pred HHHHHhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCcccCCcHH
Confidence 9999999853 456677888899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhC--CCHHHHHHHHHhcCCCcc
Q 009567 346 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVG--ITVEKLERLIFITRMPLS 423 (532)
Q Consensus 346 TYA~~wIr~aI~~~ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lg--is~e~v~~ll~~~~~~iS 423 (532)
||++||||++|.++++++.+.+++|.++...++++.++.+.+...+++.||.+|||+.|| +|+++|...+...+.++|
T Consensus 165 tya~~~ir~~i~~~ir~~~r~~r~p~~l~e~i~~l~~~~~~L~~~~~~~ps~~EIAe~Lg~~is~~tVk~~l~~ar~~ls 244 (245)
T 3ugo_A 165 TYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVS 244 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHTC------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCCCHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999988887777
Q ss_pred c
Q 009567 424 M 424 (532)
Q Consensus 424 L 424 (532)
|
T Consensus 245 l 245 (245)
T 3ugo_A 245 L 245 (245)
T ss_dssp -
T ss_pred C
Confidence 5
No 5
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=99.98 E-value=8.3e-32 Score=260.34 Aligned_cols=222 Identities=22% Similarity=0.304 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh---CCCCCHhhHHHHHHHHHHHhhhhhCCcCCCchhhHHHHHHHHHHHHHHHhhccc
Q 009567 290 NSSREKLINANLRLVVHVAKQYQ---GRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRT 366 (532)
Q Consensus 290 ~~Are~LI~~nlrLV~sIAkrY~---~~g~~~eDLiQEG~iGLikAiekFDp~kG~rFSTYA~~wIr~aI~~~ir~~~r~ 366 (532)
..|++.|+..|.++|+.+|++|. +++.+.+||+|||+++||+++++||+.+|.+|.||+++||++.|.++++++.
T Consensus 11 ~~a~~~l~~~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~d~~r~~~-- 88 (239)
T 1rp3_A 11 QIEREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAIYDYLRSLD-- 88 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHHTCCCCCTHHHHHHHHHHHHHHHHHHHHTSS--
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcC--
Confidence 46899999999999999999998 6789999999999999999999999999999999999999999999999876
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHhcC--CCcccCCCCCCCCCcchhhhcccCC
Q 009567 367 IRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITR--MPLSMQQPVWADQDTTFQEITADTG 444 (532)
Q Consensus 367 IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~--~~iSLD~~v~~d~~~~l~d~i~d~~ 444 (532)
+.|.+.....++++++...+....|+.|+.+++|..+|++++++..++.... ...|++.+..++++.. .+. ++.
T Consensus 89 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~-~~~-~~~- 164 (239)
T 1rp3_A 89 -FGSRQVREKERRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKINFSYILSLEEVFRDFARDY-SEL-IPS- 164 (239)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-GGG-
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHhccCCCccccccccCCCccc-ccc-cCC-
Confidence 5788888889999999999999999999999999999999999988775432 2345554432222112 233 332
Q ss_pred CCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc
Q 009567 445 VEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 521 (532)
Q Consensus 445 ~~~pee~~~~~~l~~~L~~~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~~ 521 (532)
..+|++.+...+....|..+|..||+++|.||.++|+ +++|++|||+.||||.++|++++++|+++||+.+..
T Consensus 165 ~~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l~~ 237 (239)
T 1rp3_A 165 STNVEEEVIKRELTEKVKEAVSKLPEREKLVIQLIFY----EELPAKEVAKILETSVSRVSQLKAKALERLREMLSN 237 (239)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHT----SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 3467778888888889999999999999999999998 899999999999999999999999999999998764
No 6
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=99.97 E-value=2e-31 Score=257.52 Aligned_cols=215 Identities=27% Similarity=0.445 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCHhhHHHHHHHHHHHhhhhhCCcCCCchhhHHHHHHHHHHHHHHHhhcccccc
Q 009567 290 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRL 369 (532)
Q Consensus 290 ~~Are~LI~~nlrLV~sIAkrY~~~g~~~eDLiQEG~iGLikAiekFDp~kG~rFSTYA~~wIr~aI~~~ir~~~r~IRl 369 (532)
..|++.|+..|.++|+++|++|.++..+.+||+|||++++|+++++|||.+|.+|.||+++|+++.+.++++++. .+++
T Consensus 27 ~~a~~~l~~~~~~~v~~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~i~~~~~~d~~r~~~-~~~~ 105 (243)
T 1l0o_C 27 QEARDEIIEKNMRLVWSVVQRFLNRGYEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYAVPMIIGEIQRFLRDDG-TVKV 105 (243)
T ss_dssp -------------------------------------------------------------------------CC-CCTT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcC-CccC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999987 7899
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCC--cchhhhcccCCCCC
Q 009567 370 PENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD--TTFQEITADTGVEI 447 (532)
Q Consensus 370 P~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~iSLD~~v~~d~~--~~l~d~i~d~~~~~ 447 (532)
|.++.....+++++...+.+..++.|+.++++..+|++.+.+...+.......|++.++.++++ .++.+.++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~------ 179 (243)
T 1l0o_C 106 SRSLKEMGNKIRKAKDELSKTRGRAPTVTEIADHLGISPEDVVLAQEAVRLPTSIHETVYENDGDPITLLDQIA------ 179 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCBHHHHHHHHTSCHHHHHHHHHHHHC-----------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHhccccCccccccccCCcccchhhccC------
Confidence 9999999999999999999999999999999999999999998887776667888877544322 22333322
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 009567 448 PDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 516 (532)
Q Consensus 448 pee~~~~~~l~~~L~~~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR 516 (532)
++.+...+....|..+|..||+++|+||.++|+ +++|++|||+.||||.++|++++.+|+++||
T Consensus 180 -~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 180 -DADEASWFDKIALKKAIEELDERERLIVYLRYY----KDQTQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp ---------------------------------------------------------------------
T ss_pred -cchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHh----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 223334455667899999999999999999998 8999999999999999999999999999997
No 7
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=99.88 E-value=2.4e-22 Score=188.73 Aligned_cols=180 Identities=16% Similarity=0.180 Sum_probs=136.6
Q ss_pred HHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHHHhhCCCCCHhhHHHHHHHHHHHhhhhhCCcCCCchhhHHHHHHHHHHH
Q 009567 279 CRDLKSELHSG-NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIR 357 (532)
Q Consensus 279 ~~~L~~~l~~g-~~Are~LI~~nlrLV~sIAkrY~~~g~~~eDLiQEG~iGLikAiekFDp~kG~rFSTYA~~wIr~aI~ 357 (532)
+.+|...++.| ..|++.|+..|.+.|+.+|++|.+ ..+.+|++||+++++|+++++|++.. .|.+|++.++++.+.
T Consensus 10 ~~~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~-~~~aeDl~Qe~~l~~~~~~~~~~~~~--~~~~~l~~i~~n~~~ 86 (194)
T 1or7_A 10 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGDS--AFYTWLYRIAVNTAK 86 (194)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTSC-GGGHHHHHHHHHHHHHHHGGGCCSSS--CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHcC-HHhHHHHHHHHHHHHHHhHHhcCCcc--chHHHHHHHHHHHHH
Confidence 45566666655 599999999999999999999999 89999999999999999999999874 599999999999999
Q ss_pred HHHHhhccccccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCCcchh
Q 009567 358 KAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ 437 (532)
Q Consensus 358 ~~ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~iSLD~~v~~d~~~~l~ 437 (532)
+++++..+..+.. ++. .... ..++.+ ..
T Consensus 87 d~~R~~~~~~~~~----------------------------~~~-----------~~~~-----~~~~~~------~~-- 114 (194)
T 1or7_A 87 NYLVAQGRRPPSS----------------------------DVD-----------AIEA-----ENFESG------GA-- 114 (194)
T ss_dssp HHHHHHTTCCTHH----------------------------HHH-----------HHHH-----HSCCSS------CC--
T ss_pred HHHHHHhccCccc----------------------------ccc-----------cccc-----cccccc------cc--
Confidence 9998866432110 000 0000 000000 00
Q ss_pred hhcccCCCCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 438 EITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 438 d~i~d~~~~~pee~~~~~~l~~~L~~~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
+.+. .+|++.+...+....|..+|..||+++|+||.++|+ +++|++|||+.||+|..+|++++.||+++||+
T Consensus 115 --~~~~--~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 115 --LKEI--SNPENLMLSEELRQIVFRTIESLPEDLRMAITLREL----DGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp ------------CEEEHHHHHHHHHHHHHHSCHHHHHHHHHHHT----TCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred --ccCC--CChHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHH----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 0010 123322333445567889999999999999999998 89999999999999999999999999999999
Q ss_pred Hhhc
Q 009567 518 SLGG 521 (532)
Q Consensus 518 ~l~~ 521 (532)
.+..
T Consensus 187 ~l~~ 190 (194)
T 1or7_A 187 KVQP 190 (194)
T ss_dssp HHCC
T ss_pred HHHH
Confidence 8754
No 8
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=99.88 E-value=7.5e-23 Score=190.93 Aligned_cols=171 Identities=12% Similarity=0.061 Sum_probs=143.7
Q ss_pred CCHHHHHHH-Hhhc-HHHHHHHHHHHHHHHHHHHHHhhCCCCCHhhHHHHHHHHHHHhhhhhCCcCCCchhhHHHHHHHH
Q 009567 277 LSCRDLKSE-LHSG-NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 354 (532)
Q Consensus 277 ~~~~~L~~~-l~~g-~~Are~LI~~nlrLV~sIAkrY~~~g~~~eDLiQEG~iGLikAiekFDp~kG~rFSTYA~~wIr~ 354 (532)
+++..|... +..| ..|++.|+..|.+.|+.+|+++.++..+.+|++||+++.+|+++++|++..| .|.+|++.++++
T Consensus 11 ~~~~~li~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~~~~~aeD~~Qe~~l~~~~~~~~~~~~~~-~~~~wl~~i~~n 89 (184)
T 2q1z_A 11 TDWVALMRAIRDHRDEAAFAELFQHFAPKVKGFLMKSGSVASQAEECAQDVMATVWQKAHLFDPSRA-SVATWIFTIARN 89 (184)
T ss_dssp TCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSGGGCCTTTC-CHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhcCcccC-cHHHHHHHHHHH
Confidence 566777777 6665 5999999999999999999999999899999999999999999999999876 799999999999
Q ss_pred HHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCCc
Q 009567 355 TIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 434 (532)
Q Consensus 355 aI~~~ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~iSLD~~v~~d~~~ 434 (532)
.+.+++++..+... ++.. .
T Consensus 90 ~~~d~~R~~~~~~~-------------------------------------------------------~~~~------~ 108 (184)
T 2q1z_A 90 RRIDGLRKDRQPEP-------------------------------------------------------EDLF------W 108 (184)
T ss_dssp SCCTTTCSSSCCCC-------------------------------------------------------CCCC------C
T ss_pred HHHHHHHhhccccc-------------------------------------------------------cccc------c
Confidence 98888876542110 0000 0
Q ss_pred chhhhcccCCCCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 009567 435 TFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYR 514 (532)
Q Consensus 435 ~l~d~i~d~~~~~pee~~~~~~l~~~L~~~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkK 514 (532)
..+ ...+|++.+...+....|..+|..||+++|+||.++|. +++|++|||+.||+|..+|+++..+|+++
T Consensus 109 -----~~~-~~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~eIA~~lgis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 109 -----GPD-SEPDQADVYEMQQENARLGRAIARLPEAQRALIERAFF----GDLTHRELAAETGLPLGTIKSRIRLALDR 178 (184)
T ss_dssp -----CSS-CCCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH----SCCSSCCSTTTCCCCCHHHHHHHHHHHHH
T ss_pred -----cCC-CCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 011 12367777777777888999999999999999999998 89999999999999999999999999999
Q ss_pred HHHHh
Q 009567 515 LKQSL 519 (532)
Q Consensus 515 LR~~l 519 (532)
||+.+
T Consensus 179 Lr~~l 183 (184)
T 2q1z_A 179 LRQHM 183 (184)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 99875
No 9
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=99.86 E-value=2.7e-21 Score=175.62 Aligned_cols=155 Identities=15% Similarity=0.189 Sum_probs=108.3
Q ss_pred CCCHhhHHHHHHHHHHHhhhhhCCcCCCchhhHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcCCC
Q 009567 315 GISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHS 394 (532)
Q Consensus 315 g~~~eDLiQEG~iGLikAiekFDp~kG~rFSTYA~~wIr~aI~~~ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~ 394 (532)
|.+++|++|||++++|+++++||+.+ .+|.||+++++++.+.++++++.+..+.|..
T Consensus 1 g~daeDl~Qe~~~~l~~~~~~~~~~~-~~f~~~l~~i~~n~~~d~~r~~~~~~~~~~~---------------------- 57 (164)
T 3mzy_A 1 GAEKEDLVQEGILGLLKAIKFYDETK-SSFSSFAFLCIRREMISAIRKANTQKHMVLN---------------------- 57 (164)
T ss_dssp ----CTTHHHHHHHHHHHHHHCCTTT-SCHHHHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCccC-CChHHHhHHHHHHHHHHHHHHhhcccchhhH----------------------
Confidence 57899999999999999999999987 7899999999999999999987643322210
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCCcchh----hhcccCCCCChhHHHHHHHHHHHHHHHHh-cCC
Q 009567 395 PDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ----EITADTGVEIPDISVQKQLMRQHVRNLLT-LLN 469 (532)
Q Consensus 395 Pt~eEIA~~lgis~e~v~~ll~~~~~~iSLD~~v~~d~~~~l~----d~i~d~~~~~pee~~~~~~l~~~L~~~L~-~L~ 469 (532)
..++.+.+..++....+. +.+.+ ...+|++.+...+....|..+|. .||
T Consensus 58 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~~l~~~L~ 111 (164)
T 3mzy_A 58 -------------------------EALKTNAILEDSAYFDDEGHNINNYKS-SESNPEEAYLLKEEIEEFKKFSENNFS 111 (164)
T ss_dssp ----------------------------------------------------------CHHHHHHHHHHHHHHHHHHHSC
T ss_pred -------------------------HHhhhhhhhccCCCCCcccchhhhhcc-cCCCHHHHHHHHHHHHHHHHHHHhhCC
Confidence 011111111111111111 11111 22367777888888889999999 999
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCc
Q 009567 470 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKA 523 (532)
Q Consensus 470 ~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~~~~ 523 (532)
+++|+||. +|. +|+|++|||+.||||.++|+++..||+++||+.+...+
T Consensus 112 ~~~r~v~~-~~~----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~~~ 160 (164)
T 3mzy_A 112 KFEKEVLT-YLI----RGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIKEEE 160 (164)
T ss_dssp HHHHHHHH-HHT----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HHH----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999 676 89999999999999999999999999999999987643
No 10
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=99.68 E-value=8e-19 Score=161.65 Aligned_cols=143 Identities=11% Similarity=0.084 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCHhhHHHHHHHHHHHhhhhhCCcCCCchhhHHHHHHHHHHHHHHHhhccccccchh
Q 009567 293 REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPEN 372 (532)
Q Consensus 293 re~LI~~nlrLV~sIAkrY~~~g~~~eDLiQEG~iGLikAiekFDp~kG~rFSTYA~~wIr~aI~~~ir~~~r~IRlP~~ 372 (532)
++.|+..|.+.|+.+|.++.++..+.+|++||+++.+|+++++|++. ..|.+|++..+++.+.+++++...
T Consensus 3 f~~l~~~~~~~l~~~~~~~~~~~~~AeDlvQe~fl~~~~~~~~~~~~--~~~~~wl~~ia~n~~~d~~R~~~~------- 73 (157)
T 2lfw_A 3 LGQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPRD--VDPRLGLYRMFQGIWASANADGEA------- 73 (157)
T ss_dssp GGGGTGGGGGGGTTTGGGTTSCHHHHHHHHHHHHHTTTTCGGGCCCS--SCTTHHHHHHHHHHHHHHTTTTSC-------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHcCCC--CcHHHHHHHHHHHHHHHHhhccCc-------
Confidence 56788999999999999999998999999999999999999999976 369999999999999988764210
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCCcchhhhcccCCCCChhHHH
Q 009567 373 IYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISV 452 (532)
Q Consensus 373 ~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~iSLD~~v~~d~~~~l~d~i~d~~~~~pee~~ 452 (532)
+ +.+. + ..
T Consensus 74 ----------------------~-----------------------------~~~~--e----------~~--------- 81 (157)
T 2lfw_A 74 ----------------------Q-----------------------------TSQS--D----------AE--------- 81 (157)
T ss_dssp ----------------------C-----------------------------CCCC--S----------CS---------
T ss_pred ----------------------c-----------------------------cCCc--c----------hH---------
Confidence 0 0000 0 00
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCc
Q 009567 453 QKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKA 523 (532)
Q Consensus 453 ~~~~l~~~L~~~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~~~~ 523 (532)
+....|..+|..||+++|+||.|+|. +++|++|||+.||||..+|++.+.||+++||+.+....
T Consensus 82 ---~~~~~l~~~l~~Lp~~~r~vl~L~~~----~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~~~~ 145 (157)
T 2lfw_A 82 ---GTEAVARARLARMTPLSRQALLLTAM----EGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTRALE 145 (157)
T ss_dssp ---SSSSTTTTTTTTSCTTHHHHHTTTSS----SCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred ---HHHHHHHHHHHhCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 01124667889999999999999998 89999999999999999999999999999999886543
No 11
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=99.63 E-value=3.5e-16 Score=161.75 Aligned_cols=85 Identities=41% Similarity=0.902 Sum_probs=77.0
Q ss_pred HHHHHHHhhc-H---HHHHHHHHHHHHHHHHHHHHhhCCCCCHhhHHHHHHHHHHHhhhhhCCcCCCchhhHHHHHHHHH
Q 009567 280 RDLKSELHSG-N---SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 355 (532)
Q Consensus 280 ~~L~~~l~~g-~---~Are~LI~~nlrLV~sIAkrY~~~g~~~eDLiQEG~iGLikAiekFDp~kG~rFSTYA~~wIr~a 355 (532)
..|...++.| . .|++.||..|+++|+++|++|.+++.+++||+||||+|||+++++|+|.+|++|+||++|||+|.
T Consensus 250 ~~l~~~~~~gd~~~~~A~~~L~~~~~~~v~~~a~~~~~~~~~aeDlvQe~~i~l~~a~~~f~~~~g~~f~twl~~iirn~ 329 (339)
T 1sig_A 250 KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 329 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTSTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHH
Confidence 3455555555 4 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 009567 356 IRKAIFQHS 364 (532)
Q Consensus 356 I~~~ir~~~ 364 (532)
|.++++++.
T Consensus 330 ~~~~lr~~~ 338 (339)
T 1sig_A 330 ITRSIADQA 338 (339)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHhc
Confidence 999998865
No 12
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=99.54 E-value=2.5e-14 Score=123.17 Aligned_cols=80 Identities=29% Similarity=0.490 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCchhhhhhh
Q 009567 451 SVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADL 530 (532)
Q Consensus 451 ~~~~~~l~~~L~~~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~~~~l~~yldl 530 (532)
.+...++...|..+|+.|||++|+||.+|||++|++++|++|||+.||||+++|++++.+|+++||..+....++.|+..
T Consensus 3 ~~~~~el~~~l~~aL~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~~~l~~~~~~ 82 (99)
T 3t72_q 3 SATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSGSSG 82 (99)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566778899999999999999999999999988999999999999999999999999999999999999999999853
No 13
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.50 E-value=1.1e-14 Score=146.85 Aligned_cols=142 Identities=13% Similarity=0.040 Sum_probs=118.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCHhhHHHHHHHHHHHhhhhhCCcCCCchhhHHHHHHHHHHHHHHHhhccccc
Q 009567 289 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIR 368 (532)
Q Consensus 289 g~~Are~LI~~nlrLV~sIAkrY~~~g~~~eDLiQEG~iGLikAiekFDp~kG~rFSTYA~~wIr~aI~~~ir~~~r~IR 368 (532)
+..+++.|+..|.+.++.+|.+|.++..+.+|++||.|+.+|+..++|++. ..|.+|++..++|.+.+++++..
T Consensus 19 ~~~~f~~l~~~~~~~l~~~a~~~~~~~~~AeD~vQe~fl~~~~~~~~~~~~--~~~~~wL~~ia~n~~~d~~r~~~---- 92 (286)
T 3n0r_A 19 SEMHLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDAN--LSPRVALYRVFHAIWLSSGAQLE---- 92 (286)
T ss_dssp -CCCHHHHHGGGHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCSS--SCHHHHHHHHHHHHHSCTTC-------
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHhCchhcCCC--cChHHHHHHHHHHHHHhhccccc----
Confidence 347899999999999999999999999999999999999999999999975 46999999999988877654210
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCCcchhhhcccCCCCCh
Q 009567 369 LPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIP 448 (532)
Q Consensus 369 lP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~iSLD~~v~~d~~~~l~d~i~d~~~~~p 448 (532)
.+ .... ..
T Consensus 93 ---------------------------------------------------------~~--~~~~---------~~---- 100 (286)
T 3n0r_A 93 ---------------------------------------------------------VG--HDQG---------LH---- 100 (286)
T ss_dssp ----------------------------------------------------------C--CCCC---------CC----
T ss_pred ---------------------------------------------------------cC--CCcc---------cc----
Confidence 00 0000 00
Q ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 009567 449 DISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 520 (532)
Q Consensus 449 ee~~~~~~l~~~L~~~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~ 520 (532)
....|..+|..||+++|+||.|+|. +++|++|||+.+|+|..+|+....+|+++|+..+.
T Consensus 101 --------~~~~l~~al~~Lp~~~R~v~~L~~~----eg~s~~EIA~~lgis~~tVks~l~rA~~~Lr~~l~ 160 (286)
T 3n0r_A 101 --------AGDDAAQRLMRIAPRSRQAFLLTAL----EGFTPTEAAQILDCDFGEVERLIGDAQAEIDAELA 160 (286)
T ss_dssp --------TTSHHHHHHHHHSCHHHHHHHHHHT----TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred --------hHHHHHHHHHhCCHHHeeEEEEEee----CCCCHHHHHHHhCcCHHHHHHHHHHHHhhhhccCC
Confidence 0124788999999999999999998 99999999999999999999999999999988654
No 14
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=99.34 E-value=1.3e-12 Score=109.18 Aligned_cols=72 Identities=38% Similarity=0.713 Sum_probs=67.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCchhhhhhh
Q 009567 459 QHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADL 530 (532)
Q Consensus 459 ~~L~~~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~~~~l~~yldl 530 (532)
..|..+|..||+++|+||.++|+|++++++|++|||+.||+|+++|++++.+|+++||..+....++.|+..
T Consensus 10 ~~l~~~l~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~~~~~~~~~~~ 81 (87)
T 1tty_A 10 EELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLSL 81 (87)
T ss_dssp SHHHHHHTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 357889999999999999999999988999999999999999999999999999999999988888888764
No 15
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=99.30 E-value=8.3e-13 Score=106.47 Aligned_cols=68 Identities=32% Similarity=0.627 Sum_probs=55.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HHhhcCchhhhh
Q 009567 461 VRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK-QSLGGKASYGYA 528 (532)
Q Consensus 461 L~~~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR-~~l~~~~l~~yl 528 (532)
|..+|+.||++||+||.++|+|+|++++|++|||+.||+|.++|+++..+|+++|| ..+....++.|+
T Consensus 4 l~~~l~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~~~~~~~~~~ 72 (73)
T 1ku3_A 4 LEKALSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFL 72 (73)
T ss_dssp CSSSTTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHhhHHHHHHhh
Confidence 45678899999999999999999889999999999999999999999999999999 888888888775
No 16
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=99.29 E-value=1.4e-11 Score=103.56 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=69.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCc
Q 009567 445 VEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKA 523 (532)
Q Consensus 445 ~~~pee~~~~~~l~~~L~~~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~~~~ 523 (532)
..+|++.+...+....|..+|..||+++|+||.++|. +++|++|||+.||||..+|++++.+|+++||+.+...+
T Consensus 15 ~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~~ 89 (92)
T 3hug_A 15 EQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYY----RGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELG 89 (92)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHT----SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3478888999999999999999999999999999998 89999999999999999999999999999999987654
No 17
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=99.27 E-value=1.5e-12 Score=103.52 Aligned_cols=66 Identities=33% Similarity=0.614 Sum_probs=61.3
Q ss_pred HHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCchhhhhh
Q 009567 464 LLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYAD 529 (532)
Q Consensus 464 ~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~~~~l~~yld 529 (532)
+|..|||+||+||.++|||++.+++|++|||+.||+|.++|++++.+|++|||..+....+..|++
T Consensus 2 ~l~~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~~~~~~~~~~ 67 (68)
T 2p7v_B 2 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 67 (68)
T ss_dssp CSCCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCGGGGGSCTTC
T ss_pred HHHcCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 367899999999999999888899999999999999999999999999999999998888888764
No 18
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=98.97 E-value=8.6e-10 Score=86.96 Aligned_cols=64 Identities=16% Similarity=0.067 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCch
Q 009567 457 MRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKAS 524 (532)
Q Consensus 457 l~~~L~~~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~~~~l 524 (532)
....+..+|..||++++.||.++|. +++|++|||+.+|+|+.+|+++.++|+++||..+....+
T Consensus 5 ~~~~l~~~l~~L~~~~r~il~l~~~----~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~~~~~ 68 (70)
T 2o8x_A 5 DLVEVTTMIADLTTDQREALLLTQL----LGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDL 68 (70)
T ss_dssp HHHHHHTTTTSSCHHHHHHHHHHHT----SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhhcccC
Confidence 3457888999999999999999997 899999999999999999999999999999998876543
No 19
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=98.86 E-value=4.8e-09 Score=90.31 Aligned_cols=82 Identities=17% Similarity=0.157 Sum_probs=69.1
Q ss_pred HHHHHHhhc-HHHHHHHHHHHHHHHHHHHHHhhCCCCCHhhHHHHHHHHHHHhhhhhCCcCCCchhhHHHHHHHHHHHHH
Q 009567 281 DLKSELHSG-NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKA 359 (532)
Q Consensus 281 ~L~~~l~~g-~~Are~LI~~nlrLV~sIAkrY~~~g~~~eDLiQEG~iGLikAiekFDp~kG~rFSTYA~~wIr~aI~~~ 359 (532)
.|...+..| ..|++.|+..|.+.++.+|.++ ++..+.+|++||+++.+|+.+.+|++. ..|.+|++..+++.+.++
T Consensus 13 ~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~-~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~ 89 (112)
T 2o7g_A 13 ALALSAAKGNGRALEAFIKATQQDVWRFVAYL-SDVGSADDLTQETFLRAIGAIPRFSAR--SSARTWLLAIARHVVADH 89 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHGGGCCCS--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHH
Confidence 344444444 5999999999999999999999 888899999999999999999999974 369999999999999999
Q ss_pred HHhhcc
Q 009567 360 IFQHSR 365 (532)
Q Consensus 360 ir~~~r 365 (532)
++++.+
T Consensus 90 ~R~~~~ 95 (112)
T 2o7g_A 90 IRHVRS 95 (112)
T ss_dssp TC----
T ss_pred HHHhhc
Confidence 987654
No 20
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=98.82 E-value=1.7e-08 Score=88.42 Aligned_cols=69 Identities=22% Similarity=0.202 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHH-hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCch
Q 009567 452 VQKQLMRQHVRNLL-TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKAS 524 (532)
Q Consensus 452 ~~~~~l~~~L~~~L-~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~~~~l 524 (532)
++.......+..++ ..||+++|+||.++|. +++|++|||+.||+|..+|+.+..||+++||..+...++
T Consensus 9 ~e~~~~~~~l~~~l~~~L~~~~r~vl~l~~~----~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~~~ 78 (113)
T 1xsv_A 9 LVKTLRMNYLFDFYQSLLTNKQRNYLELFYL----EDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKLEL 78 (113)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHHHHHHHHHT----SCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34445566788899 9999999999999987 899999999999999999999999999999999876554
No 21
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=98.76 E-value=9.1e-09 Score=84.56 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=67.0
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhCCCCCHhhHHHHHHHHHHHhhhhhCCcCCCchhhHHHHHHHHHHHHHHHhhc
Q 009567 288 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHS 364 (532)
Q Consensus 288 ~g~~Are~LI~~nlrLV~sIAkrY~~~g~~~eDLiQEG~iGLikAiekFDp~kG~rFSTYA~~wIr~aI~~~ir~~~ 364 (532)
++..+++.|+..|.+.++.+|.++.++..+.+|++||+++.+|+.+++|++. ..|.+|++..+++.+.++++++.
T Consensus 9 g~~~af~~l~~~~~~~l~~~~~~~~~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~~R~~~ 83 (87)
T 1h3l_A 9 ERSARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREG--TNLKAWLYRILTNTFINSYRKKQ 83 (87)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHGGGCCSS--SCHHHHHHHHHHHHHHHTCC---
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHHHhc
Confidence 3458999999999999999999999998999999999999999999999975 47999999999999999987654
No 22
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=98.68 E-value=2.9e-08 Score=87.07 Aligned_cols=63 Identities=21% Similarity=0.212 Sum_probs=57.5
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCch
Q 009567 458 RQHVRNLL-TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKAS 524 (532)
Q Consensus 458 ~~~L~~~L-~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~~~~l 524 (532)
...+..++ ..|||++++||.++|. +|+|.+|||+.+|+|+.+|+.+..+|+++||..+...++
T Consensus 12 ~~~l~~~l~~~L~~~~r~vl~l~y~----~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~~~ 75 (113)
T 1s7o_A 12 MNALFEFYAALLTDKQMNYIELYYA----DDYSLAEIADEFGVSRQAVYDNIKRTEKILETYEMKLHM 75 (113)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHH----TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 44677788 8999999999999988 899999999999999999999999999999999876554
No 23
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.64 E-value=2.5e-11 Score=120.44 Aligned_cols=154 Identities=10% Similarity=0.037 Sum_probs=109.6
Q ss_pred HHHHHHhhcH-HHHHHHHHHHHHHHHHHHHHhhCCCCCHhhHH----HHHHHHHHHhhhhhCCcCCCchhhHHHHHHHHH
Q 009567 281 DLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLL----QEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 355 (532)
Q Consensus 281 ~L~~~l~~g~-~Are~LI~~nlrLV~sIAkrY~~~g~~~eDLi----QEG~iGLikAiekFDp~kG~rFSTYA~~wIr~a 355 (532)
.|...++.++ .+.+.+...+.++++.+............|+. ||.++.+|+.+..|++.. .|.+|++..+++.
T Consensus 86 ~ll~~i~p~D~~~~~~~~~~~~~fi~~l~~~~~~~~~~~~dl~~~~~qe~fl~~~~~~~~~~~~~--~~~~WL~~ia~n~ 163 (258)
T 3clo_A 86 CIYRRIHPEDLVEKRLMEYKFFQKTFSMSPGERLKYRGRCRLRMMNEKGVYQYIDNLVQIMQNTP--AGNVWLIFCLYSL 163 (258)
T ss_dssp HHHTTBCHHHHHHHHHHHHHHHHHHTTSCHHHHTTEEEEEEEEEECTTSCEEEEEEEEEEEEECT--TSCEEEEEEEEEE
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHhcCHHhccCCeeeEEeecCCcCHHHHHHHHhHHhcCCCC--chHHHHHHHHHHH
Confidence 4556666665 78999999999999999988777777778886 999999999999998653 5888876554433
Q ss_pred HHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCCcc
Q 009567 356 IRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTT 435 (532)
Q Consensus 356 I~~~ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~iSLD~~v~~d~~~~ 435 (532)
+.++.+.. .+...+......
T Consensus 164 ~~d~~r~~-----------------------------------------------------------~~~~~~~~~~~~- 183 (258)
T 3clo_A 164 SADQRPEQ-----------------------------------------------------------GIYATITQMERG- 183 (258)
T ss_dssp CSCCCCCS-----------------------------------------------------------SCCCEEEETTTT-
T ss_pred Hcchhhhh-----------------------------------------------------------HHHHHHHhhccc-
Confidence 32221000 000000000000
Q ss_pred hhhhcccCCCCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 009567 436 FQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRL 515 (532)
Q Consensus 436 l~d~i~d~~~~~pee~~~~~~l~~~L~~~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKL 515 (532)
+... .+ .+..++..||+++|+||.+++ +|+|.+|||+.||+|..+|+.+..||++||
T Consensus 184 --~~~~-----~~-----------~~~~~~~~L~~~erevl~L~~-----~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL 240 (258)
T 3clo_A 184 --EVET-----LS-----------LSEEHRNILSEREKEILRCIR-----KGLSSKEIAATLYISVNTVNRHRQNILEKL 240 (258)
T ss_dssp --EEEE-----CC-----------CHHHHTTSSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred --cccc-----ch-----------hhHHHHccCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 0000 00 135567899999999999985 799999999999999999999999999999
Q ss_pred HHHh
Q 009567 516 KQSL 519 (532)
Q Consensus 516 R~~l 519 (532)
|...
T Consensus 241 ~~~~ 244 (258)
T 3clo_A 241 SVGN 244 (258)
T ss_dssp TCSS
T ss_pred cCCC
Confidence 8743
No 24
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=98.54 E-value=3.8e-08 Score=82.38 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 456 LMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 456 ~l~~~L~~~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
.....+..++..|+++|++||.++ . +|+|.+|||+.||||..+|+.+..++++||+..
T Consensus 18 ~~~~~l~~~l~~Lt~~e~~vl~l~-~----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 18 SHMKKRAELYEMLTEREMEILLLI-A----KGYSNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp -------CTGGGCCSHHHHHHHHH-H----TTCCTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHH-H----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 344567888999999999999995 4 799999999999999999999999999999764
No 25
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=98.50 E-value=8.5e-08 Score=82.53 Aligned_cols=64 Identities=23% Similarity=0.201 Sum_probs=55.0
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHhcccC---CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc
Q 009567 457 MRQHVRNLL-TLLNPKERCIVRLRFGIED---GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 521 (532)
Q Consensus 457 l~~~L~~~L-~~L~~rER~VL~LRyGL~~---~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~~ 521 (532)
..+.+..++ ..|+++|+.+|.+|||+.+ +.++|++|||+.+|+|+.+|.++ +|+|++|...++.
T Consensus 24 ~~~~l~~~l~~lLT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~l~~~~k~ 91 (101)
T 1jhg_A 24 QNDLHLPLLNLMLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLKAAPVELRQ 91 (101)
T ss_dssp HTTCHHHHHHHHSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSCHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHHccHHHHH
Confidence 344567777 6799999999999999975 45799999999999999999999 8999999876543
No 26
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=98.48 E-value=1.8e-07 Score=79.17 Aligned_cols=60 Identities=20% Similarity=0.230 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc
Q 009567 457 MRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 521 (532)
Q Consensus 457 l~~~L~~~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~~ 521 (532)
....|..++..|+++|++||.+++ +++|.+|||+.||||..+|+.+..++++||+..-..
T Consensus 17 ~~~~l~~~l~~Lt~~e~~vl~l~~-----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~ 76 (95)
T 3c57_A 17 RGSHMQDPLSGLTDQERTLLGLLS-----EGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRT 76 (95)
T ss_dssp ----------CCCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHH
Confidence 345678889999999999999974 899999999999999999999999999999875433
No 27
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=98.47 E-value=1.9e-07 Score=75.23 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=50.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 459 QHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 459 ~~L~~~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
..+..++..||++|++||.++ . +++|.+|||+.||+|..+|+++..++++||+..
T Consensus 8 ~~l~~~l~~L~~~e~~vl~l~-~----~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 8 NDIRARLQTLSERERQVLSAV-V----AGLPNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp HHHHHHHHHHCHHHHHHHHHH-T----TTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCHHHHHHHHHH-H----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 357788999999999999995 4 799999999999999999999999999999753
No 28
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=98.35 E-value=3.1e-07 Score=75.55 Aligned_cols=56 Identities=16% Similarity=0.221 Sum_probs=48.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 009567 460 HVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 520 (532)
Q Consensus 460 ~L~~~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~ 520 (532)
.+..++..|+++|++||.++ . +++|.+|||+.||||..+|+.+..++++||+....
T Consensus 14 ~~~~~~~~Lt~~e~~vl~l~-~----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 69 (82)
T 1je8_A 14 TTERDVNQLTPRERDILKLI-A----QGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSR 69 (82)
T ss_dssp ---CCGGGSCHHHHHHHHHH-T----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHccCCHHHHHHHHHH-H----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 35677899999999999995 4 79999999999999999999999999999976443
No 29
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=98.19 E-value=1.5e-06 Score=68.83 Aligned_cols=53 Identities=25% Similarity=0.238 Sum_probs=45.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 461 VRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 461 L~~~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
....+..|+++|++||.+. . +++|.+|||+.||+|..+|+++..++++||+..
T Consensus 5 ~~~~~~~L~~~e~~il~~~-~----~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 5 EFQSKPLLTKREREVFELL-V----QDKTTKEIASELFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp ---CCCCCCHHHHHHHHHH-T----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred cCCCCCCCCHHHHHHHHHH-H----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Confidence 3456788999999999995 4 789999999999999999999999999999753
No 30
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=98.01 E-value=8.2e-06 Score=68.44 Aligned_cols=49 Identities=20% Similarity=0.225 Sum_probs=43.1
Q ss_pred HHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 009567 463 NLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 516 (532)
Q Consensus 463 ~~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR 516 (532)
.....|+++|++||.+.+ +|+|.+|||+.||||..+|+....++++||.
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~-----~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVE-----KGFTNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp ----CCCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred ccccCCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 346789999999999987 7999999999999999999999999999984
No 31
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=97.93 E-value=7.9e-06 Score=62.50 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 470 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 470 ~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
|+|++|+.+ +. +|+|.+|||+.||+|..+|+....++++||+.
T Consensus 1 ~re~~vl~l-~~----~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 1 LRERQVLKL-ID----EGYTNHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp CHHHHHHHH-HH----TSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHH-HH----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 579999999 55 89999999999999999999999999999965
No 32
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=97.89 E-value=1.6e-05 Score=68.03 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=43.5
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 466 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 466 ~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
..|+++|++||.+.+ +++|.+|||+.||||..+|+....++++||.-
T Consensus 33 ~~Lt~re~~Vl~l~~-----~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 33 KRLSPKESEVLRLFA-----EGFLVTEIAKKLNRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp SSCCHHHHHHHHHHH-----HTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 679999999999965 79999999999999999999999999999953
No 33
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=97.49 E-value=0.00015 Score=70.34 Aligned_cols=46 Identities=24% Similarity=0.327 Sum_probs=42.9
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
.|+++|++||.+.+ +|+|.+|||++||||..||+.+..++++||.-
T Consensus 175 ~Lt~~e~~vl~~~~-----~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 175 MLSPREMLCLVWAS-----KGKTASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp SCCHHHHHHHHHHH-----TTCCHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 59999999999965 79999999999999999999999999999953
No 34
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=97.46 E-value=0.00015 Score=70.19 Aligned_cols=45 Identities=27% Similarity=0.383 Sum_probs=42.2
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 516 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR 516 (532)
.|+++|++||.+.+ +|+|.+|||++||||..+|+....++++||.
T Consensus 173 ~Lt~~e~~vl~~~~-----~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 173 WLDPKEATYLRWIA-----VGKTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCHHHHHHHHHHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 59999999999964 7999999999999999999999999999984
No 35
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=97.32 E-value=0.00025 Score=69.11 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=43.0
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 009567 466 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 516 (532)
Q Consensus 466 ~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR 516 (532)
..|+++|++|+.+.. +|+|.+|||+.||||..||+....++++||.
T Consensus 174 ~~Lt~re~~vl~~~~-----~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (237)
T 3szt_A 174 VRLTARETEMLKWTA-----VGKTYGEIGLILSIDQRTVKFHIVNAMRKLN 219 (237)
T ss_dssp CCCCHHHHHHHHHHH-----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 469999999999975 7999999999999999999999999999984
No 36
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=97.21 E-value=0.00037 Score=69.21 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=43.3
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
.|+++|++||.+.. +|+|.+|||++||||..||+....++++||.-
T Consensus 197 ~Lt~re~~vl~~~~-----~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~ 242 (265)
T 3qp6_A 197 PLSQREYDIFHWMS-----RGKTNWEIATILNISERTVKFHVANVIRKLNA 242 (265)
T ss_dssp CCCHHHHHHHHHHH-----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 69999999999986 79999999999999999999999999999853
No 37
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=96.93 E-value=0.0012 Score=47.02 Aligned_cols=40 Identities=20% Similarity=0.124 Sum_probs=32.8
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.|++.++..+...|. +++|..|||+.||||+.+|+.+..+
T Consensus 5 ~l~~~~~~~i~~~~~----~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKL----LNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 478888866666565 7899999999999999999987654
No 38
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=96.55 E-value=0.0049 Score=56.99 Aligned_cols=50 Identities=14% Similarity=0.310 Sum_probs=44.6
Q ss_pred HHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 009567 462 RNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 516 (532)
Q Consensus 462 ~~~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR 516 (532)
...+..|+++|++|+.+.. +++|.+|||+.+|+|..+|+.+..++++||.
T Consensus 137 ~~~~~~Lt~rE~~vl~~l~-----~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~ 186 (208)
T 1yio_A 137 EQLFSSLTGREQQVLQLTI-----RGLMNKQIAGELGIAEVTVKVHRHNIMQKLN 186 (208)
T ss_dssp HHHHHTSCHHHHHHHHHHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCHHHHHHHHHHH-----cCCcHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4445689999999998865 6899999999999999999999999999985
No 39
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=96.38 E-value=0.012 Score=50.40 Aligned_cols=46 Identities=17% Similarity=0.147 Sum_probs=42.1
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 516 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR 516 (532)
.+++.-..|-.++|. +|+|..|||+.||||+.+|.+++.+|...+-
T Consensus 18 ~~~~~~~~~A~lyYv----~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~ 63 (101)
T 2w7n_A 18 EVGQQTIEIARGVLV----DGKPQATFATSLGLTRGAVSQAVHRVWAAFE 63 (101)
T ss_dssp CCCHHHHHHHHHHHT----TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 678888899999998 9999999999999999999999999988764
No 40
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=96.32 E-value=0.0064 Score=56.61 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=42.6
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 009567 466 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 516 (532)
Q Consensus 466 ~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR 516 (532)
..|+++|++|+.+.. +++|.+|||+.+++|..+|+.+..+.++||.
T Consensus 153 ~~Lt~rE~~vl~~l~-----~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~ 198 (215)
T 1a04_A 153 NQLTPRERDILKLIA-----QGLPNKMIARRLDITESTVKVHVKHMLKKMK 198 (215)
T ss_dssp GGSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 469999999999876 6899999999999999999999999999994
No 41
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=96.15 E-value=0.0049 Score=45.80 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009567 469 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 511 (532)
Q Consensus 469 ~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rA 511 (532)
++..+.|+.+ +. .++|..|||+.||||+.+|+.+..+|
T Consensus 18 ~~~~~~i~~l-~~----~g~s~~eIA~~lgis~~TV~~~l~~a 55 (55)
T 2x48_A 18 DDLVSVAHEL-AK----MGYTVQQIANALGVSERKVRRYLESC 55 (55)
T ss_dssp HHHHHHHHHH-HH----TTCCHHHHHHHHTSCHHHHHHHHTC-
T ss_pred HHHHHHHHHH-HH----cCCCHHHHHHHHCcCHHHHHHHHHhC
Confidence 4455666666 44 78999999999999999999987654
No 42
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=96.05 E-value=0.0085 Score=56.68 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=42.2
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 009567 466 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 516 (532)
Q Consensus 466 ~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR 516 (532)
..|+++|++|+.+.. +++|.+|||+.+++|..||+....+.++||.
T Consensus 148 ~~LT~rE~~vL~~l~-----~g~s~~eIa~~l~is~~TV~~hi~~l~~KL~ 193 (225)
T 3c3w_A 148 SGLTDQERTLLGLLS-----EGLTNKQIADRMFLAEKTVKNYVSRLLAKLG 193 (225)
T ss_dssp TTSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHH-----CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 469999999998876 6899999999999999999999999999984
No 43
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=95.36 E-value=0.014 Score=54.94 Aligned_cols=47 Identities=17% Similarity=0.197 Sum_probs=42.3
Q ss_pred HhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 009567 465 LTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 516 (532)
Q Consensus 465 L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR 516 (532)
...|+++|++|+.+.. +++|.+|||+.+++|..+|+.+..+.++||.
T Consensus 157 ~~~Lt~rE~~vL~~l~-----~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~ 203 (225)
T 3klo_A 157 YAKLTKREQQIIKLLG-----SGASNIEIADKLFVSENTVKTHLHNVFKKIN 203 (225)
T ss_dssp HHTSCHHHHHHHHHHT-----TTCCHHHHHHHTTCCHHHHHHHHHHHTTTSC
T ss_pred cccCCHHHHHHHHHHH-----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 3469999999999854 6899999999999999999999999999883
No 44
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=94.90 E-value=0.068 Score=50.79 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=48.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 009567 458 RQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 516 (532)
Q Consensus 458 ~~~L~~~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR 516 (532)
.......+..|++++++|+.+.. .+++.++||..||+|..+|+....++++||.
T Consensus 189 ~~~~~~~l~~L~~r~~~i~~~~~-----~g~~~~eia~~l~~s~~tv~~~l~~i~~kl~ 242 (258)
T 3p7n_A 189 RERAAEMLKTLSPRQLEVTTLVA-----SGLRNKEVAARLGLSEKTVKMHRGLVMEKLN 242 (258)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 44567889999999999999876 6899999999999999999999999999884
No 45
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=94.05 E-value=0.01 Score=65.69 Aligned_cols=33 Identities=30% Similarity=0.547 Sum_probs=12.9
Q ss_pred CChHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Q 009567 216 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDL 248 (532)
Q Consensus 216 ~~d~l~~yl~~i~~~~lLT~eEE~eL~~~iq~~ 248 (532)
.+||+++||++|++.||||+++|++|+++|..+
T Consensus 94 ~~dpvrmyl~emg~~~ll~~~~e~~~ak~ie~g 126 (613)
T 3iyd_F 94 TTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 126 (613)
T ss_dssp -----------C--------CSSSTTTHHHHHH
T ss_pred CCCcHHHHHHHhcccccCCchhHHHHHHHHHHh
Confidence 579999999999999999999999999999874
No 46
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=93.55 E-value=0.061 Score=50.04 Aligned_cols=50 Identities=20% Similarity=0.121 Sum_probs=42.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG---LSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~Lg---ISrerVRqie~rALkKLR~ 517 (532)
.|+++|++|+.+..- +.|+.+|.+|||+.++ +|..+|+.+..+.++||..
T Consensus 145 ~Lt~rE~~vl~~l~~-~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~~ 197 (220)
T 1p2f_A 145 HLPKKEFEILLFLAE-NAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIED 197 (220)
T ss_dssp CCCHHHHHHHHHHHH-TTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHCS
T ss_pred ecCHHHHHHHHHHHH-CCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHhc
Confidence 599999999987652 2335599999999999 9999999999999999963
No 47
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=93.49 E-value=0.087 Score=42.52 Aligned_cols=44 Identities=20% Similarity=0.466 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 470 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 470 ~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
+.++.||.+..-...|++.|..|||+.+|||+.+|+++ |.+|.+
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~----L~~L~~ 57 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRV----LYSLAK 57 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 44577776655544456899999999999999998754 555644
No 48
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=93.29 E-value=0.085 Score=37.58 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=25.6
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 473 RCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 473 R~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
+.|+.+ +. .+.|..+||+.+|||+.+|..+..+
T Consensus 12 ~~i~~l-~~----~g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 12 EQISRL-LE----KGHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp HHHHHH-HH----TTCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred HHHHHH-HH----cCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 345555 43 5699999999999999999887643
No 49
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=93.26 E-value=0.085 Score=49.94 Aligned_cols=50 Identities=10% Similarity=-0.049 Sum_probs=41.9
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~L-----gISrerVRqie~rALkKLR~ 517 (532)
.|+++|.+||.+..- +-|..+|.+|||+.+ ++|..+|+....+.++||..
T Consensus 153 ~LT~rE~~vL~~l~~-~~~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL~~ 207 (238)
T 2gwr_A 153 SLTPLEFDLLVALAR-KPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVEK 207 (238)
T ss_dssp CCCHHHHHHHHHHHH-STTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHCS
T ss_pred ccCHHHHHHHHHHHH-CCCceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhcc
Confidence 599999999987652 233559999999999 99999999999999999953
No 50
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=92.94 E-value=0.078 Score=49.57 Aligned_cols=50 Identities=10% Similarity=0.034 Sum_probs=43.0
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~L-----gISrerVRqie~rALkKLR~ 517 (532)
.|+++|.+||.+..- +.|+.+|.+|||+.+ ++|..+|+.+..+.++||..
T Consensus 156 ~Lt~rE~~vL~~l~~-~~~~~~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~~Kl~~ 210 (230)
T 2oqr_A 156 TLPLKEFDLLEYLMR-NSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEA 210 (230)
T ss_dssp CCCHHHHHHHHHHHH-TTTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHHHHHCS
T ss_pred ecCHHHHHHHHHHHh-CCCceEcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHhh
Confidence 599999999987652 334569999999999 99999999999999999853
No 51
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=92.69 E-value=0.17 Score=41.32 Aligned_cols=43 Identities=23% Similarity=0.494 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 471 KERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 471 rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
.++.||.+......|+..|..|||+.||||+.+|+ +.|.+|.+
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~----~~L~~Le~ 53 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEIN----RVLYSLAK 53 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 45666665554444578999999999999998886 55666654
No 52
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=92.60 E-value=0.089 Score=48.87 Aligned_cols=50 Identities=12% Similarity=0.056 Sum_probs=42.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG-----LSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~Lg-----ISrerVRqie~rALkKLR~ 517 (532)
.|+++|.+|+.+..- +.|..+|.+|||+.++ +|..+|+.+..+.++||..
T Consensus 151 ~Lt~rE~~vL~~l~~-~~~~~~s~~eIa~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 205 (225)
T 1kgs_A 151 DLTKKEYQILEYLVM-NKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDK 205 (225)
T ss_dssp CCCHHHHHHHHHHHH-TTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHHT
T ss_pred ecCHHHHHHHHHHHh-CCCcccCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhhC
Confidence 599999999987652 2234599999999998 9999999999999999964
No 53
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=92.21 E-value=0.088 Score=49.21 Aligned_cols=50 Identities=10% Similarity=-0.023 Sum_probs=41.8
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG-----LSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~Lg-----ISrerVRqie~rALkKLR~ 517 (532)
.|+++|.+|+.+..- +.|..+|.+|||+.++ +|..+|+.+..+.++||..
T Consensus 159 ~Lt~rE~~vL~~l~~-g~~~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 213 (233)
T 1ys7_A 159 DLTKREFDLLAVLAE-HKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEA 213 (233)
T ss_dssp CCCHHHHHHHHHHHH-TTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHh-CCCCeEcHHHHHHHhcCcccCCCccCHHHHHHHHHHHhcc
Confidence 599999999987653 2234599999999998 9999999999999999964
No 54
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=91.38 E-value=0.18 Score=44.34 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=28.5
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHH
Q 009567 466 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQ 506 (532)
Q Consensus 466 ~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRq 506 (532)
..|+.| .+|+.+.. +++|+.|||+.+|+|..||..
T Consensus 60 ~aLs~R-~eV~klL~-----~G~syreIA~~~g~S~aTIsR 94 (119)
T 3kor_A 60 QSLSQR-LQVAKMIK-----QGYTYATIEQESGASTATISR 94 (119)
T ss_dssp HHHHHH-HHHHHHHH-----HTCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHH-HHHHHHHH-----cCCCHHHHHHHHCCCHHHHHH
Confidence 455666 67777765 679999999999999999975
No 55
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=91.26 E-value=0.24 Score=42.86 Aligned_cols=40 Identities=20% Similarity=0.124 Sum_probs=32.8
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.|++.++..|...+- .|+|..+||+.||+|+.+|+.+..+
T Consensus 6 ~~s~~~r~~i~~~~~----~G~s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 6 ALSDTERAQLDVMKL----LNVSLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCHHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHc
Confidence 467777766666664 6899999999999999999988765
No 56
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=91.04 E-value=0.041 Score=54.00 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC--CCHHHHHHHHHHHHHHHH
Q 009567 461 VRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG--LSKERVRQLESRALYRLK 516 (532)
Q Consensus 461 L~~~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~Lg--ISrerVRqie~rALkKLR 516 (532)
+...+..|++..+. |...|| .+.|.+|||+.|| ||.++|+.++.+|++.|.
T Consensus 192 l~e~i~~l~~~~~~-L~~~~~----~~ps~~EIAe~Lg~~is~~tVk~~l~~ar~~ls 244 (245)
T 3ugo_A 192 MVETINKLSRTARQ-LQQELG----REPSYEEIAEAMGPGWDAKRVEETLKIAQEPVS 244 (245)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHH-HHHHhC----CCCCHHHHHHHHCCCCCHHHHHHHHHHHhhccC
Confidence 45566778887777 445666 7899999999999 999999999999988763
No 57
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=91.04 E-value=0.076 Score=49.50 Aligned_cols=50 Identities=4% Similarity=-0.050 Sum_probs=42.5
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG-----LSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~Lg-----ISrerVRqie~rALkKLR~ 517 (532)
.|+++|++||.+..- +.|..+|.+|||+.++ +|..+|+.+..+.++||..
T Consensus 143 ~Lt~rE~~vL~~l~~-~~~~~~s~~~Ia~~l~~~~~~~s~~tv~~~i~~lr~KL~~ 197 (223)
T 2hqr_A 143 EVKGKPFEVLTHLAR-HRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDK 197 (223)
T ss_dssp CCCSTTTHHHHHHHH-TCSEEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHHHHHHT
T ss_pred ecCHHHHHHHHHHHh-CCCCcCCHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHhc
Confidence 599999999988652 1123499999999999 9999999999999999974
No 58
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=90.89 E-value=0.35 Score=46.09 Aligned_cols=50 Identities=18% Similarity=0.130 Sum_probs=43.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~L-----gISrerVRqie~rALkKLR~ 517 (532)
.|+++|.+||.+..- +.|+..|.+||++.+ +++..+|+.+..+.++||..
T Consensus 176 ~LT~rE~~iL~~l~~-~~~~~~s~~~i~~~lw~~~~~~~~~tv~~~i~~lr~KL~~ 230 (250)
T 3r0j_A 176 SLSPTEFTLLRYFVI-NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDT 230 (250)
T ss_dssp CCCHHHHHHHHHHHH-TTTCCBCHHHHHHHHTTTSCCSCTHHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHHH-CCCceEcHHHHHHHHcCCCCCCCccCHHHHHHHHHHhhcC
Confidence 599999999988753 446889999999999 78999999999999999964
No 59
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=90.80 E-value=0.38 Score=40.51 Aligned_cols=42 Identities=12% Similarity=-0.018 Sum_probs=31.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 512 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rAL 512 (532)
.+++.++.-+...+. .++|..+||+.||||+.+|+.+..+..
T Consensus 17 ~~s~~~r~~i~~~~~----~g~s~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAA----DGIRPCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp CCCHHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 355555544444444 679999999999999999999887643
No 60
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=90.62 E-value=0.15 Score=49.00 Aligned_cols=50 Identities=24% Similarity=0.246 Sum_probs=42.5
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHH-----HhCCCHHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGN-----IFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe-----~LgISrerVRqie~rALkKLR~ 517 (532)
.|+++|++||.+..- +.|..+|.+|||+ .++++..+|+....+.++||..
T Consensus 182 ~LT~rE~evL~ll~~-g~~~~~s~~eIa~~l~~~~l~~s~~TV~~hi~~lr~KL~~ 236 (249)
T 3q9s_A 182 RLSPKEFDILALLIR-QPGRVYSRQEIGQEIWQGRLPEGSNVVDVHMANLRAKLRD 236 (249)
T ss_dssp CCCHHHHHHHHHHHH-STTCCCCHHHHHHHHHTTCSCTTCSHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHHH-CCCceEcHHHHHHHhcCCCCCCCccCHHHHHHHHHHHhhc
Confidence 599999999998763 3346699999999 5888999999999999999853
No 61
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=89.88 E-value=0.28 Score=46.53 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=29.1
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 009567 473 RCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 512 (532)
Q Consensus 473 R~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rAL 512 (532)
..+..+ |. .|+|..|||+.||||+.+|.+++..|.
T Consensus 15 ~ria~~-y~----~g~tQ~eIA~~lGiSr~~VSR~L~~A~ 49 (192)
T 1zx4_A 15 LRLMRM-KN----DGMSQKDIAAKEGLSQAKVTRALQAAS 49 (192)
T ss_dssp HHHHHH-HH----TTCCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HHHHHH-HH----cCCCHHHHHHHhCcCHHHHHHHHHHhc
Confidence 345555 65 789999999999999999999987764
No 62
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=89.43 E-value=0.73 Score=37.61 Aligned_cols=48 Identities=23% Similarity=0.277 Sum_probs=35.7
Q ss_pred HHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 464 LLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 464 ~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
....|++.+..+|...+. .+.+.|..|||+.+|+|+.+|++ .+++|.+
T Consensus 15 ~~~~l~~~~~~~l~~l~~--~~~~~t~~ela~~l~is~~tv~~----~l~~L~~ 62 (109)
T 2d1h_A 15 CCYKITDTDVAVLLKMVE--IEKPITSEELADIFKLSKTTVEN----SLKKLIE 62 (109)
T ss_dssp HHHTCCHHHHHHHHHHHH--HCSCEEHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred HhhcCCHHHHHHHHHHHH--cCCCCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 346789988888765441 12689999999999999999975 4555543
No 63
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=88.99 E-value=0.6 Score=41.21 Aligned_cols=42 Identities=12% Similarity=-0.002 Sum_probs=32.0
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 512 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rAL 512 (532)
.+++.+|.-|...+- .++|..+||+.||||+.+|+.+..+..
T Consensus 32 ~~s~e~r~~iv~~~~----~G~s~~~iA~~lgis~~TV~rw~~~~~ 73 (149)
T 1k78_A 32 PLPDVVRQRIVELAH----QGVRPCDISRQLRVSHGCVSKILGRYY 73 (149)
T ss_dssp CCCHHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 355555555555454 679999999999999999999987753
No 64
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=88.76 E-value=0.44 Score=44.52 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=33.0
Q ss_pred cCCHHHHHHHHHHhcc--cCCCCCCHHHHHHHhCCCHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGI--EDGKPKSLSEVGNIFGLSKERVRQLE 508 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL--~~~e~~Tl~EIAe~LgISrerVRqie 508 (532)
.|+++|++|+.+-.-+ ..|.+.|.+|||+.||+|..+|+.++
T Consensus 2 ~lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l 45 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHL 45 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHH
Confidence 5899999999875422 23478999999999999988876543
No 65
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=88.59 E-value=0.57 Score=36.41 Aligned_cols=44 Identities=25% Similarity=0.406 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 468 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
+++..+.||.+.- .++.+.|..|||+.+|+|+.+|. +.++.|++
T Consensus 8 m~~~~~~IL~~L~--~~~~~~s~~eLA~~lglsr~tv~----~~l~~L~~ 51 (67)
T 2heo_A 8 GDNLEQKILQVLS--DDGGPVAIFQLVKKCQVPKKTLN----QVLYRLKK 51 (67)
T ss_dssp -CHHHHHHHHHHH--HHCSCEEHHHHHHHHCSCHHHHH----HHHHHHHH
T ss_pred ccHHHHHHHHHHH--HcCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3444555665542 12367999999999999988886 55666665
No 66
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=88.43 E-value=0.91 Score=39.27 Aligned_cols=49 Identities=10% Similarity=0.159 Sum_probs=38.1
Q ss_pred HHHhcCCHHHHHHHHHHhcccCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 463 NLLTLLNPKERCIVRLRFGIEDGKP-KSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 463 ~~L~~L~~rER~VL~LRyGL~~~e~-~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
...-.|++.+..|+..... .+.+ .|..|||+.+|+|+.+|. |++++|.+
T Consensus 19 ~~~~gLt~~e~~il~~L~~--~~~~~~t~~eLa~~l~~s~sTV~----r~L~~L~~ 68 (123)
T 3r0a_A 19 KCALNLTKADLNVMKSFLN--EPDRWIDTDALSKSLKLDVSTVQ----RSVKKLHE 68 (123)
T ss_dssp HHHHTCCHHHHHHHHHHHH--STTCCEEHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHH--CCCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 4456899999999887653 2234 899999999999999996 66666655
No 67
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=87.79 E-value=0.4 Score=39.36 Aligned_cols=24 Identities=8% Similarity=0.122 Sum_probs=21.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 487 PKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 487 ~~Tl~EIAe~LgISrerVRqie~r 510 (532)
+.|..|||+.||||+.+|++++.+
T Consensus 30 g~sa~eLAk~LgiSk~aVr~~L~~ 53 (82)
T 1oyi_A 30 GATAAQLTRQLNMEKREVNKALYD 53 (82)
T ss_dssp TEEHHHHHHHSSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 499999999999999999876654
No 68
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=87.41 E-value=0.97 Score=36.68 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESRAL 512 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~rAL 512 (532)
.+.|..+||+.||||+.+|+++..+..
T Consensus 37 ~g~s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 37 DGESKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 468999999999999999999986543
No 69
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=87.39 E-value=1.5 Score=40.26 Aligned_cols=53 Identities=11% Similarity=0.256 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 457 MRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 457 l~~~L~~~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
+...+...+..|++.+..||..-+... +.+.|..+||+.+|+++.+|..++.+
T Consensus 28 ~~~~~~~~~~~lt~~q~~vL~~L~~~~-~~~~t~~eLa~~l~is~~tvs~~l~~ 80 (189)
T 3nqo_A 28 IQIEGDKYFGILTSRQYMTILSILHLP-EEETTLNNIARKMGTSKQNINRLVAN 80 (189)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHSC-GGGCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhcc-CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 344556667789999999998776321 25899999999999999999755443
No 70
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=87.16 E-value=1.1 Score=39.61 Aligned_cols=45 Identities=16% Similarity=0.310 Sum_probs=34.2
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 466 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 466 ~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
..|++.++.||.+... +...|..|||+.+|+|+.+|+.+ +++|.+
T Consensus 5 ~~ld~~d~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~----l~~L~~ 49 (151)
T 2dbb_A 5 RKLDRVDMQLVKILSE---NSRLTYRELADILNTTRQRIARR----IDKLKK 49 (151)
T ss_dssp -CCCHHHHHHHHHHHH---CTTCCHHHHHHHTTSCHHHHHHH----HHHHHH
T ss_pred hhCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 3488999999876432 25799999999999999999754 455544
No 71
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=86.83 E-value=1.1 Score=39.55 Aligned_cols=40 Identities=20% Similarity=0.137 Sum_probs=31.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
.|++.++.||.+... +...|..|||+.+|+|+.+|+.+.+
T Consensus 2 ~ld~~d~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~ 41 (144)
T 2cfx_A 2 KLDQIDLNIIEELKK---DSRLSMRELGRKIKLSPPSVTERVR 41 (144)
T ss_dssp CCCHHHHHHHHHHHH---CSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 378888888876542 2579999999999999999975543
No 72
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=86.57 E-value=3.2 Score=33.79 Aligned_cols=40 Identities=33% Similarity=0.399 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 469 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 469 ~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
++....||.+. . .+.|..|||+.+|+|+.+|++. ++.|.+
T Consensus 30 ~~~r~~Il~~L-~----~~~~~~eLa~~l~is~~tv~~~----L~~L~~ 69 (96)
T 1y0u_A 30 NPVRRKILRML-D----KGRSEEEIMQTLSLSKKQLDYH----LKVLEA 69 (96)
T ss_dssp CHHHHHHHHHH-H----TTCCHHHHHHHHTCCHHHHHHH----HHHHHH
T ss_pred CHHHHHHHHHH-c----CCCCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 45666677655 3 5799999999999999999754 455544
No 73
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=86.15 E-value=1.9 Score=36.84 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=39.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcccCC---CCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 459 QHVRNLLTLLNPKERCIVRLRFGIEDG---KPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 459 ~~L~~~L~~L~~rER~VL~LRyGL~~~---e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
..|...+..|++.|+.|..+..- .. ..+|..|||+..|+|..+|.+..+
T Consensus 10 ~~i~~~~~~ls~~e~~ia~yil~--~~~~~~~~si~elA~~~~vS~aTv~Rf~k 61 (111)
T 2o3f_A 10 AIIQSMXHXLPPSERKLADYILA--HPHXAIESTVNEISALANSSDAAVIRLCX 61 (111)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHH--CHHHHHTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHH--ChHHHHhcCHHHHHHHHCCCHHHHHHHHH
Confidence 45667788999999999876552 11 369999999999999999986654
No 74
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=86.00 E-value=1.5 Score=38.91 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=31.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
.|++.++.||.+... +...|..|||+.+|+|+.+|+++.+
T Consensus 4 ~ld~~~~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~ 43 (151)
T 2cyy_A 4 PLDEIDKKIIKILQN---DGKAPLREISKITGLAESTIHERIR 43 (151)
T ss_dssp CCCHHHHHHHHHHHH---CTTCCHHHHHHHHCSCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 478888888876432 2479999999999999999976543
No 75
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=85.99 E-value=1.3 Score=38.51 Aligned_cols=43 Identities=16% Similarity=0.397 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 468 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
|++.++.||..... +...|..|||+.+|+|+.+|++ .+++|.+
T Consensus 2 ld~~~~~il~~L~~---~~~~~~~ela~~lg~s~~tv~~----~l~~L~~ 44 (141)
T 1i1g_A 2 IDERDKIILEILEK---DARTPFTEIAKKLGISETAVRK----RVKALEE 44 (141)
T ss_dssp CCSHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHH----HHHHHHH
T ss_pred CCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 67788888875431 2578999999999999999975 4555544
No 76
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=85.79 E-value=0.87 Score=45.73 Aligned_cols=36 Identities=14% Similarity=0.284 Sum_probs=29.7
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 009567 474 CIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 513 (532)
Q Consensus 474 ~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALk 513 (532)
.|..++|. +++|.+|||+.||||+.+||+.+..+.+
T Consensus 12 ~ia~l~~~----~~~~~~ela~~l~vS~~tIrRdL~~l~~ 47 (315)
T 2w48_A 12 KIAQLYYE----QDMTQAQIARELGIYRTTISRLLKRGRE 47 (315)
T ss_dssp HHHHHHHT----SCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHc----CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46667776 7899999999999999999977766543
No 77
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=85.74 E-value=1.4 Score=32.90 Aligned_cols=33 Identities=6% Similarity=0.182 Sum_probs=26.5
Q ss_pred CCC----HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 009567 487 PKS----LSEVGNIFGLSKERVRQLESRALYRLKQSLG 520 (532)
Q Consensus 487 ~~T----l~EIAe~LgISrerVRqie~rALkKLR~~l~ 520 (532)
+.| ..+||..|||++++|+++... .+.++..+.
T Consensus 21 g~s~~~~~~~vA~~~gIs~~tl~~W~~~-~~~~~~~~~ 57 (59)
T 2glo_A 21 DNDCKGNQRATARKYNIHRRQIQKWLQC-ESNLRSSVA 57 (59)
T ss_dssp CTTTTTCHHHHHHHTTSCHHHHHHHHTT-HHHHHHHHT
T ss_pred CCCcchHHHHHHHHHCcCHHHHHHHHHH-HHHHHHHHh
Confidence 467 999999999999999999764 556665543
No 78
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=85.72 E-value=1.3 Score=38.09 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=31.1
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.|++.+..||..-+. +. .|..|||+.+|+|+.+|+++..+
T Consensus 35 ~lt~~~~~iL~~l~~---~~-~t~~eLa~~l~~s~~tvs~~l~~ 74 (146)
T 3tgn_A 35 ALTNTQEHILMLLSE---ES-LTNSELARRLNVSQAAVTKAIKS 74 (146)
T ss_dssp CCCHHHHHHHHHHTT---CC-CCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh---CC-CCHHHHHHHHCCCHHHHHHHHHH
Confidence 467888888876553 23 99999999999999999754443
No 79
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=85.61 E-value=1.6 Score=38.77 Aligned_cols=40 Identities=23% Similarity=0.395 Sum_probs=31.7
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
.|++.++.||.+... +...|..|||+.+|+|+.+|+++.+
T Consensus 5 ~ld~~d~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~ 44 (152)
T 2cg4_A 5 LIDNLDRGILEALMG---NARTAYAELAKQFGVSPETIHVRVE 44 (152)
T ss_dssp CCCHHHHHHHHHHHH---CTTSCHHHHHHHHTSCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 478888888876432 2578999999999999999976543
No 80
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=85.21 E-value=1.3 Score=38.38 Aligned_cols=45 Identities=11% Similarity=0.105 Sum_probs=33.4
Q ss_pred hcCCHHHHHHHHHHhcc-cCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 466 TLLNPKERCIVRLRFGI-EDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 466 ~~L~~rER~VL~LRyGL-~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
..|++.+..+|...+.+ ..+.+.|..+||+.+|+|+.+|++++++
T Consensus 9 ~~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~ 54 (139)
T 2x4h_A 9 SNLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSH 54 (139)
T ss_dssp --CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHH
Confidence 46888888887765543 2346899999999999999999754443
No 81
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=85.11 E-value=1.4 Score=39.55 Aligned_cols=41 Identities=12% Similarity=0.042 Sum_probs=32.4
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.|++.++.||.+... +...|..|||+.+|+|+.+|++++.+
T Consensus 7 ~ld~~~~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~~ 47 (162)
T 2p5v_A 7 TLDKTDIKILQVLQE---NGRLTNVELSERVALSPSPCLRRLKQ 47 (162)
T ss_dssp CCCHHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 488888888876542 24689999999999999999765443
No 82
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=85.07 E-value=2.8 Score=34.91 Aligned_cols=50 Identities=22% Similarity=0.237 Sum_probs=34.5
Q ss_pred HHHHHHhcCC-HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 460 HVRNLLTLLN-PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 460 ~L~~~L~~L~-~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
.+...+..|. +....||.+-.. .++|..|||+.+|+|+.+|+++ +++|++
T Consensus 15 ~~~~~~~~l~~~~r~~IL~~L~~----~~~~~~ela~~l~is~stvs~~----L~~L~~ 65 (106)
T 1r1u_A 15 RVTEIFKALGDYNRIRIMELLSV----SEASVGHISHQLNLSQSNVSHQ----LKLLKS 65 (106)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHH----CCBCHHHHHHHHTCCHHHHHHH----HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 3445555555 555566665442 5789999999999999999754 455554
No 83
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=85.02 E-value=2.3 Score=36.54 Aligned_cols=41 Identities=12% Similarity=0.223 Sum_probs=29.6
Q ss_pred hcCCHHHHHHHHHHhcccC--CCCCCHHHHHHHhCCCHHHHHH
Q 009567 466 TLLNPKERCIVRLRFGIED--GKPKSLSEVGNIFGLSKERVRQ 506 (532)
Q Consensus 466 ~~L~~rER~VL~LRyGL~~--~e~~Tl~EIAe~LgISrerVRq 506 (532)
.-+++.|+.-|-.|+-+-. .+|+|+.||++.+|+|..+|.+
T Consensus 35 dL~T~~E~~alaqR~~Ia~lL~~G~SyreIa~~tG~StaTIsR 77 (107)
T 3frw_A 35 DVCTINELLSLSQRFEVAKMLTDKRTYLDISEKTGASTATISR 77 (107)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCccHHHHHH
Confidence 3467777766655543321 1579999999999999999964
No 84
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=84.88 E-value=1.5 Score=38.75 Aligned_cols=40 Identities=28% Similarity=0.262 Sum_probs=31.9
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
.|++.++.||.+-.. +...|..|||+.+|+|+.+|+++..
T Consensus 4 ~ld~~~~~iL~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~ 43 (150)
T 2w25_A 4 ALDDIDRILVRELAA---DGRATLSELATRAGLSVSAVQSRVR 43 (150)
T ss_dssp CCCHHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 488889988886532 2579999999999999999975543
No 85
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=84.66 E-value=2.1 Score=36.90 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=36.3
Q ss_pred HHHHHHHHHhc----CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 457 MRQHVRNLLTL----LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 457 l~~~L~~~L~~----L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
+...+...+.. |++.+..||..-+. ..+.|..|||+.+|+++.+|.++..+
T Consensus 20 ~~~~~~~~l~~~~~~lt~~~~~vL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~ 74 (142)
T 3ech_A 20 VRTRIQSELDCQRLDLTPPDVHVLKLIDE---QRGLNLQDLGRQMCRDKALITRKIRE 74 (142)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHH---TTTCCHHHHHHHHC---CHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHh---CCCcCHHHHHHHhCCCHHHHHHHHHH
Confidence 34456666654 99999999887664 25899999999999999999765544
No 86
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=84.65 E-value=1.3 Score=35.93 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=31.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
.|++.+..|+..... +.+.|..|||+.+|+|+.+|++++.
T Consensus 17 ~l~~~~~~il~~l~~---~~~~s~~ela~~l~is~~tv~~~l~ 56 (109)
T 1sfx_A 17 SFKPSDVRIYSLLLE---RGGMRVSEIARELDLSARFVRDRLK 56 (109)
T ss_dssp CCCHHHHHHHHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 578888888876542 2579999999999999999975443
No 87
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=84.62 E-value=3.8 Score=34.86 Aligned_cols=51 Identities=10% Similarity=0.021 Sum_probs=37.6
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 458 RQHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 458 ~~~L~~~L--~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
...+...+ ..|++.+..||...+.- ++.+.|..|||+.+|+++.+|..+..
T Consensus 20 ~~~~~~~~~~~~lt~~~~~iL~~l~~~-~~~~~~~~ela~~l~~~~~tvs~~l~ 72 (141)
T 3bro_A 20 STRFDIFAKKYDLTGTQMTIIDYLSRN-KNKEVLQRDLESEFSIKSSTATVLLQ 72 (141)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHT-TTSCCBHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHC-CCCCcCHHHHHHHHCCCcchHHHHHH
Confidence 34455555 35899999998876642 22379999999999999999975443
No 88
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=84.61 E-value=1.5 Score=35.41 Aligned_cols=33 Identities=15% Similarity=0.427 Sum_probs=24.1
Q ss_pred cccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 481 GIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 481 GL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
+|..|+..|..+||..||+|+..|. |+|-+|.+
T Consensus 23 ~L~~~~~~Ta~~IAkkLg~sK~~vN----r~LY~L~k 55 (75)
T 1sfu_A 23 SLNTNDYTTAISLSNRLKINKKKIN----QQLYKLQK 55 (75)
T ss_dssp TSCTTCEECHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred hCCCCcchHHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 3444466899999999999987775 55555543
No 89
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=84.42 E-value=2.8 Score=35.89 Aligned_cols=47 Identities=13% Similarity=0.185 Sum_probs=36.1
Q ss_pred HHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 460 HVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 460 ~L~~~L--~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.+...+ ..|++.+..||...+ +.+.|..|||+.+|+|+.+|..+..+
T Consensus 25 ~~~~~~~~~~l~~~~~~iL~~l~----~~~~~~~ela~~l~~s~~tvs~~l~~ 73 (146)
T 2gxg_A 25 ELNRRLGELNLSYLDFLVLRATS----DGPKTMAYLANRYFVTQSAITASVDK 73 (146)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHT----TSCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh----cCCcCHHHHHHHhCCCchhHHHHHHH
Confidence 344444 358999999987765 26899999999999999999754443
No 90
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=84.36 E-value=1.5 Score=38.62 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 468 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
|++.++.||.+-- .+.+.|..|||+.+|+|+.+|+++ +++|.+
T Consensus 1 ld~~~~~il~~L~---~~~~~~~~ela~~lg~s~~tv~~~----l~~L~~ 43 (150)
T 2pn6_A 1 MDEIDLRILKILQ---YNAKYSLDEIAREIRIPKATLSYR----IKKLEK 43 (150)
T ss_dssp CCHHHHHHHHHHT---TCTTSCHHHHHHHHTSCHHHHHHH----HHHHHH
T ss_pred CChHHHHHHHHHH---HcCCCCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 5677778877543 235799999999999999999754 445544
No 91
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=84.11 E-value=1.6 Score=39.48 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 468 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
|++.++.||.+--. +...|..|||+.+|+|+.+|+..++
T Consensus 1 lD~~d~~il~~L~~---~~~~s~~~la~~lg~s~~tv~~rl~ 39 (162)
T 3i4p_A 1 MDRLDRKILRILQE---DSTLAVADLAKKVGLSTTPCWRRIQ 39 (162)
T ss_dssp CCHHHHHHHHHHTT---CSCSCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH---CCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 56778888876432 3578999999999999999985543
No 92
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=83.95 E-value=1.8 Score=35.43 Aligned_cols=41 Identities=15% Similarity=0.188 Sum_probs=29.0
Q ss_pred CCHHHHH-HHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009567 468 LNPKERC-IVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 511 (532)
Q Consensus 468 L~~rER~-VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rA 511 (532)
.++..+. |+.+..- +.+.|..+||..+|||+.+|+++..+.
T Consensus 6 ys~e~k~~~v~~~~~---~~g~s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 6 YSEEFKRDAVALYEN---SDGASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCHHHHHHHHHHHTT---GGGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH---cCCChHHHHHHHHCcCHHHHHHHHHHH
Confidence 4555553 4444331 027899999999999999999987653
No 93
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=83.65 E-value=3.3 Score=35.11 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=37.5
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 458 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 458 ~~~L~~~L~--~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
...+...+. .|++.+..||..-+. +.+.|..|||+.+|+|+.+|..+..+
T Consensus 15 ~~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~~~~ela~~l~~s~~tvs~~l~~ 66 (138)
T 3bpv_A 15 RVFIGRELGHLNLTDAQVACLLRIHR---EPGIKQDELATFFHVDKGTIARTLRR 66 (138)
T ss_dssp HHHHHHHSGGGTCCHHHHHHHHHHHH---STTCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 334445553 589999998877654 36899999999999999999754433
No 94
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=82.95 E-value=0.68 Score=41.47 Aligned_cols=39 Identities=13% Similarity=0.027 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 468 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
++..+|.-|...+- .++|..+||+.||||+.+|+.+..+
T Consensus 26 ~s~e~r~~ii~l~~----~G~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 26 LPEVVRQRIVDLAH----QGVRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp SCHHHHHHHHHHHH----HTCCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 45555544444443 5799999999999999999998765
No 95
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=82.79 E-value=3.5 Score=35.00 Aligned_cols=41 Identities=7% Similarity=0.046 Sum_probs=33.4
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.|++.+..||..-+. +.+.|..|||+.+|+|+.+|..+..+
T Consensus 28 ~l~~~~~~iL~~l~~---~~~~~~~ela~~l~is~~~vs~~l~~ 68 (142)
T 3bdd_A 28 GISLTRYSILQTLLK---DAPLHQLALQERLQIDRAAVTRHLKL 68 (142)
T ss_dssp SSCHHHHHHHHHHHH---HCSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 799999998887653 25799999999999999999754433
No 96
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=82.53 E-value=1.9 Score=34.70 Aligned_cols=49 Identities=29% Similarity=0.346 Sum_probs=33.3
Q ss_pred HHHHhcC-CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 462 RNLLTLL-NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 462 ~~~L~~L-~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
..++..| ++.+..||.+.. .+.+.|..|||+.+|+|+.+|++. +++|.+
T Consensus 15 ~~~~~~l~~~~~~~il~~l~---~~~~~s~~ela~~l~is~~tvs~~----l~~L~~ 64 (99)
T 3cuo_A 15 AALLKAMSHPKRLLILCMLS---GSPGTSAGELTRITGLSASATSQH----LARMRD 64 (99)
T ss_dssp HHHHHHHCSHHHHHHHHHHT---TCCSEEHHHHHHHHCCCHHHHHHH----HHHHHH
T ss_pred HHHHHHhCChHHHHHHHHHH---hCCCcCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 3444444 356666665433 346899999999999999999754 455543
No 97
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=82.52 E-value=4.8 Score=35.21 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=38.1
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009567 459 QHVRNLL---TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 511 (532)
Q Consensus 459 ~~L~~~L---~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rA 511 (532)
..+...+ ..|++.|..||...+. +.+.|..|||+.+|+++.+|.+++.+-
T Consensus 35 ~~~~~~l~~~~~lt~~~~~iL~~l~~---~~~~t~~ela~~l~is~~tvs~~l~~L 87 (162)
T 2fa5_A 35 GNIAKVYGDRYGMAIPEWRVITILAL---YPGSSASEVSDRTAMDKVAVSRAVARL 87 (162)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHH---STTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444 3699999999887664 258999999999999999997655443
No 98
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=82.46 E-value=3.6 Score=33.74 Aligned_cols=50 Identities=26% Similarity=0.336 Sum_probs=33.3
Q ss_pred HHHHHHhcCC-HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 460 HVRNLLTLLN-PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 460 ~L~~~L~~L~-~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
.+..++..|. |.-..||.+-. + .++|..||++.+|+|+.+|++ .|++|++
T Consensus 12 ~~~~~~~~l~~~~r~~Il~~L~---~-~~~~~~ela~~l~is~~tvs~----~L~~L~~ 62 (102)
T 3pqk_A 12 EVANLLKTLSHPVRLMLVCTLV---E-GEFSVGELEQQIGIGQPTLSQ----QLGVLRE 62 (102)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHH---T-CCBCHHHHHHHHTCCTTHHHH----HHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH---h-CCCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 3445555555 44445554433 2 469999999999999999975 5555654
No 99
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=82.29 E-value=2.7 Score=35.72 Aligned_cols=48 Identities=10% Similarity=0.120 Sum_probs=36.2
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 459 QHVRNLLT-LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 459 ~~L~~~L~-~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
..+...+. .|++.+..||..-+. +.+.|..|||+.+|+++.+|..+..
T Consensus 26 ~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~tvs~~l~ 74 (140)
T 2nnn_A 26 ALFANGIGNGLTPTQWAALVRLGE---TGPCPQNQLGRLTAMDAATIKGVVE 74 (140)
T ss_dssp HHHHHHCSSCCCHHHHHHHHHHHH---HSSBCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 33444443 799999998877653 2489999999999999999975443
No 100
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=82.22 E-value=2.2 Score=39.14 Aligned_cols=40 Identities=20% Similarity=0.350 Sum_probs=32.3
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
.|++.++.||.+... + ...|+.|||+.+|+|+.+|++.+.
T Consensus 24 ~ld~~d~~IL~~L~~--~-~~~s~~eLA~~lglS~~tv~~rl~ 63 (171)
T 2e1c_A 24 PLDEIDKKIIKILQN--D-GKAPLREISKITGLAESTIHERIR 63 (171)
T ss_dssp CCCHHHHHHHHHHHH--C-TTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--c-CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 588999998876542 2 479999999999999999976543
No 101
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=81.93 E-value=4.1 Score=33.07 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=33.4
Q ss_pred HHHHHHhcCC-HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 460 HVRNLLTLLN-PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 460 ~L~~~L~~L~-~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
.+..++..|. +....||.+- .+ .+.|..|||+.+|+|+.+|+ +.+++|++
T Consensus 12 ~~~~~~~~l~~~~r~~Il~~L---~~-~~~~~~ela~~l~is~~tvs----~~L~~L~~ 62 (98)
T 3jth_A 12 KAVVLLKAMANERRLQILCML---HN-QELSVGELCAKLQLSQSALS----QHLAWLRR 62 (98)
T ss_dssp HHHHHHHHHCSHHHHHHHHHT---TT-SCEEHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH---hc-CCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3445555554 4444555433 23 58999999999999999996 45556654
No 102
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=81.89 E-value=1.5 Score=35.88 Aligned_cols=44 Identities=11% Similarity=0.079 Sum_probs=32.9
Q ss_pred cCCHHHHHHHHHHhccc-CCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIE-DGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~-~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.|+.++..||...+.-. +|.+.|..|||+.+|+++.+|.+++.+
T Consensus 9 ~l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~ 53 (95)
T 2qvo_A 9 LFKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKK 53 (95)
T ss_dssp HSCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 47888888887665322 234489999999999999999765443
No 103
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=81.77 E-value=2.9 Score=34.66 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=31.3
Q ss_pred HHHHHhcCC-HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 461 VRNLLTLLN-PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 461 L~~~L~~L~-~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
+..++..|. +....||.+.. + .+.|..|||+.+|+|+.+|++++.
T Consensus 11 ~~~~~~~l~~~~r~~IL~~L~---~-~~~~~~ela~~l~is~~tv~~~l~ 56 (114)
T 2oqg_A 11 LASVFAALSDETRWEILTELG---R-ADQSASSLATRLPVSRQAIAKHLN 56 (114)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH---H-SCBCHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHhCChHHHHHHHHHH---c-CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 444455554 55566666542 2 469999999999999999975543
No 104
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=81.75 E-value=1.7 Score=36.37 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=34.8
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 466 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 466 ~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
..+.+....||...+- .|++.|..|||+.+|+|+.+|+ +++++|...
T Consensus 14 ~~~~~~~l~Il~~l~~--~g~~~s~~eLa~~lgvs~~tV~----~~L~~L~~~ 60 (110)
T 1q1h_A 14 SLLGDDVIDVLRILLD--KGTEMTDEEIANQLNIKVNDVR----KKLNLLEEQ 60 (110)
T ss_dssp TTSCSTTHHHHHHHHH--HCSCBCHHHHHHTTTSCHHHHH----HHHHHHHHH
T ss_pred HHcChHHHHHHHHHHH--cCCCCCHHHHHHHHCcCHHHHH----HHHHHHHHC
Confidence 3455667777766542 3467999999999999999997 567777653
No 105
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=81.69 E-value=4.6 Score=34.38 Aligned_cols=53 Identities=9% Similarity=0.147 Sum_probs=39.4
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 457 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 457 l~~~L~~~L~--~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
+...+...+. .|++.+..||..-+. .++++.|..|||+.+|+++.+|..+..+
T Consensus 16 ~~~~~~~~~~~~~lt~~~~~vL~~l~~-~~~~~~t~~ela~~l~~~~~tvs~~l~~ 70 (139)
T 3eco_A 16 MKQKADQKLEQFDITNEQGHTLGYLYA-HQQDGLTQNDIAKALQRTGPTVSNLLRN 70 (139)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHHHH-STTTCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHh-cCCCCcCHHHHHHHhCCCcccHHHHHHH
Confidence 3445555553 589999999987764 2225899999999999999999765444
No 106
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=81.58 E-value=2.2 Score=39.02 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=31.7
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 466 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 466 ~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
..|++.++.||.+... +...|..|||+.+|+|+.+|+.++.
T Consensus 13 ~~ld~~d~~IL~~L~~---~~~~s~~eLA~~lglS~~tv~~~l~ 53 (171)
T 2ia0_A 13 IHLDDLDRNILRLLKK---DARLTISELSEQLKKPESTIHFRIK 53 (171)
T ss_dssp -CCCHHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4578888888876542 2478999999999999999976543
No 107
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=81.56 E-value=1.7 Score=46.57 Aligned_cols=105 Identities=15% Similarity=0.108 Sum_probs=59.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCC-CCCCcchhhhcccCCCCChhHHHHHHHHHHHHHHHHhcCCHHH
Q 009567 394 SPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVW-ADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKE 472 (532)
Q Consensus 394 ~Pt~eEIA~~lgis~e~v~~ll~~~~~~iSLD~~v~-~d~~~~l~d~i~d~~~~~pee~~~~~~l~~~L~~~L~~L~~rE 472 (532)
..|..+||+.+|+|...|+.-+..-+..+.-...+. ...+-. +......... .....+++.+
T Consensus 32 ~it~~eLA~~L~VS~RTIr~dI~~In~~L~~~~~I~~~~~Gy~----L~~~~~~~~~-------------~~~~~~~~~e 94 (485)
T 3sqn_A 32 QLTAKRLAAQIQTTERTVFSDLQYIRSQLPADWSIETDSSGIR----LRNQGNAQTN-------------ELWSLFLPQS 94 (485)
T ss_dssp SCBCGGGHHHHTSCHHHHHHHHHHHHTTCCTTEEEEEETTEEE----EEEC---CTH-------------HHHHHHGGGS
T ss_pred CcCHHHHHHHhCCCHHHHHHHHHHHHHhcccCcEEEEcCCEEE----EecCcHHHHH-------------HHHHhcCHHH
Confidence 578999999999999999987765433221000010 011111 1111000000 0112244555
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 009567 473 RCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 516 (532)
Q Consensus 473 R~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR 516 (532)
|....+.+.|.. ++.|+.++|+.+.||++||.+-.++..+.|+
T Consensus 95 R~~~Il~~LL~~-~~isi~~Lae~l~VS~sTi~~DLk~i~~~L~ 137 (485)
T 3sqn_A 95 ISIQLLKELLFT-KELVTTSFLSTSGVSYETLKRHIKKMNQALR 137 (485)
T ss_dssp HHHHHHHHHHHC-SEEEHHHHHHHHTCCHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 655555555543 5899999999999999999766655555443
No 108
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=81.48 E-value=2.2 Score=35.20 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 469 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 469 ~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
+|....||..... + .++|..|||+.+|+|+++|++..+.
T Consensus 26 ~~~Rl~IL~~l~~--~-~~~~~~ela~~l~is~stvs~hL~~ 64 (99)
T 2zkz_A 26 HPMRLKIVNELYK--H-KALNVTQIIQILKLPQSTVSQHLCK 64 (99)
T ss_dssp SHHHHHHHHHHHH--H-SCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--C-CCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 4666677733221 1 4799999999999999999876543
No 109
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=81.45 E-value=4.1 Score=34.80 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=32.9
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHH
Q 009567 466 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLE 508 (532)
Q Consensus 466 ~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie 508 (532)
..|++.+..|+.+.+ +.+ .+.|..|||+.+|+|+.+|..+.
T Consensus 22 ~gl~~~~~~il~~L~-~~~-~~~t~~ela~~l~~~~stvs~~l 62 (152)
T 1ku9_A 22 HGLNKSVGAVYAILY-LSD-KPLTISDIMEELKISKGNVSMSL 62 (152)
T ss_dssp TTCCHHHHHHHHHHH-HCS-SCEEHHHHHHHHTCCHHHHHHHH
T ss_pred cCCChhHHHHHHHHH-HcC-CCCCHHHHHHHHCcCHHHHHHHH
Confidence 368999999988764 223 57999999999999999996544
No 110
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=81.43 E-value=3.1 Score=32.91 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
.+.|..|||+.+|+|+.+|++ .+++|.+
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r----~L~~L~~ 40 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARY----YLLLLEK 40 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHH----HHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 468999999999999999975 4555544
No 111
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=81.43 E-value=4.7 Score=35.00 Aligned_cols=48 Identities=15% Similarity=0.242 Sum_probs=36.9
Q ss_pred HHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 460 HVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 460 ~L~~~L--~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.+...+ ..|++.|..||..-+. +.+.|..|||+.+|+++.+|.++..+
T Consensus 29 ~~~~~~~~~~lt~~q~~iL~~l~~---~~~~~~~eLa~~l~~~~~~vs~~l~~ 78 (149)
T 4hbl_A 29 FYEKKLKQFGITYSQYLVMLTLWE---ENPQTLNSIGRHLDLSSNTLTPMLKR 78 (149)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH---SSSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 344444 3599999999887653 36899999999999999999765544
No 112
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=81.35 E-value=1.5 Score=36.74 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009567 470 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 511 (532)
Q Consensus 470 ~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rA 511 (532)
+|...|+.+..- .+.|..+||+.+|||..||+..+..-
T Consensus 7 ~R~~~I~~~l~~----~~~ti~dlA~~~gVS~~TVsR~L~~~ 44 (93)
T 2l0k_A 7 ERTIKIGKYIVE----TKKTVRVIAKEFGVSKSTVHKDLTER 44 (93)
T ss_dssp HHHHHHHHHHHH----HCCCHHHHHHHHTSCHHHHHHHHTTH
T ss_pred HHHHHHHHHHHH----cCCCHHHHHHHHCCCHHHHHHHHcCC
Confidence 345555555443 34899999999999999999887753
No 113
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=81.25 E-value=3.7 Score=34.60 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=32.3
Q ss_pred HHHHHhc-CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 461 VRNLLTL-LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 461 L~~~L~~-L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
+..++.. .++.+..||.+..- .+.|+.|||+.+|+|+.+|++.++
T Consensus 22 ~~~~~~~l~~~~~~~il~~L~~----~~~s~~ela~~l~is~stvsr~l~ 67 (119)
T 2lkp_A 22 VASTLQALATPSRLMILTQLRN----GPLPVTDLAEAIGMEQSAVSHQLR 67 (119)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHH----CCCCHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH----CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3344433 35677777776553 479999999999999999975544
No 114
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=81.24 E-value=9.9 Score=31.28 Aligned_cols=36 Identities=11% Similarity=0.035 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 382 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 382 ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
++..-+.......++.++||+.+|+++..+..+...
T Consensus 6 ~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 6 QVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 344445555666789999999999999999888763
No 115
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=80.85 E-value=5.1 Score=34.81 Aligned_cols=50 Identities=6% Similarity=0.133 Sum_probs=37.3
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 458 RQHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 458 ~~~L~~~L--~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
...+...+ ..|++.+..||...+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 29 ~~~~~~~l~~~~lt~~~~~iL~~l~~---~~~~t~~ela~~l~i~~~tvs~~l~~ 80 (155)
T 3cdh_A 29 SAQFHDHIRAQGLRVPEWRVLACLVD---NDAMMITRLAKLSLMEQSRMTRIVDQ 80 (155)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHSS---CSCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH---CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 34444444 3699999988876543 35799999999999999999765443
No 116
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=80.70 E-value=4.6 Score=34.76 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=37.3
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 459 QHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 459 ~~L~~~L~--~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
..+...+. .|++.+..||...+. ..+.|..|||+.+|+++.+|.+++.+
T Consensus 29 ~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~tvs~~l~~ 79 (150)
T 2rdp_A 29 QRGREILTNYPITPPQFVALQWLLE---EGDLTVGELSNKMYLACSTTTDLVDR 79 (150)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHH---HCSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCchhHHHHHHH
Confidence 34555553 589999998877653 24799999999999999999765544
No 117
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=80.69 E-value=4.6 Score=34.30 Aligned_cols=62 Identities=16% Similarity=0.221 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhcc-cCCCCCCHHHHHHHhCCCHHHHHHHHHH----HHHHHHHHh
Q 009567 458 RQHVRNLLTLLNPKERCIVRLRFGI-EDGKPKSLSEVGNIFGLSKERVRQLESR----ALYRLKQSL 519 (532)
Q Consensus 458 ~~~L~~~L~~L~~rER~VL~LRyGL-~~~e~~Tl~EIAe~LgISrerVRqie~r----ALkKLR~~l 519 (532)
...|...+..|++.|+.|..+..-= ..-..+|..|+|+..|+|..+|-+..++ ...-+|..+
T Consensus 5 ~~~I~~~~~~lt~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kkLGf~gf~efk~~l 71 (107)
T 3iwf_A 5 LYKIDNQYPYFTKNEKKIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSKKVTPGGFNELKTRL 71 (107)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHSTTHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3467788899999999998754420 0114799999999999999999765543 344444444
No 118
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=80.60 E-value=4.8 Score=34.11 Aligned_cols=51 Identities=6% Similarity=0.017 Sum_probs=38.5
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 457 MRQHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 457 l~~~L~~~L--~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
+...+...+ ..|++.+..||..-+. ..+.|..+||+.+|+++.+|.++..+
T Consensus 19 ~~~~~~~~~~~~~lt~~~~~iL~~l~~---~~~~~~~~la~~l~~~~~tvs~~l~~ 71 (138)
T 1jgs_A 19 KDRLLNEYLSPLDITAAQFKVLCSIRC---AACITPVELKKVLSVDLGALTRMLDR 71 (138)
T ss_dssp HHHHHHHHHTTTTSCHHHHHHHHHHHH---HSSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHh---cCCCCHHHHHHHHCCChHHHHHHHHH
Confidence 344555555 3589999998877653 25789999999999999999765544
No 119
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=80.53 E-value=4.5 Score=35.08 Aligned_cols=41 Identities=5% Similarity=0.050 Sum_probs=33.7
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.|++.+..||..-+. ..+.|..|||+.+|+++.+|.++..+
T Consensus 38 ~lt~~~~~iL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~ 78 (154)
T 2qww_A 38 GLTIQQLAMINVIYS---TPGISVADLTKRLIITGSSAAANVDG 78 (154)
T ss_dssp TCCHHHHHHHHHHHH---STTEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 699999999887654 25799999999999999999765544
No 120
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=79.86 E-value=5.1 Score=34.71 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=38.3
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 457 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 457 l~~~L~~~L~--~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
+...+...+. .|++.|..||..-+. .+.+.|..|||+.+|+++.+|..++.+
T Consensus 24 ~~~~~~~~l~~~glt~~q~~vL~~l~~--~~~~~t~~eLa~~l~i~~~tvs~~l~~ 77 (150)
T 3fm5_A 24 VLGAVNKALVPTGLRVRSYSVLVLACE--QAEGVNQRGVAATMGLDPSQIVGLVDE 77 (150)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHHHH--STTCCCSHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHh--CCCCcCHHHHHHHHCCCHhHHHHHHHH
Confidence 3445555553 589999999886542 235689999999999999999765544
No 121
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=79.83 E-value=1.1 Score=41.78 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=32.0
Q ss_pred cCCHHHHHHHHHHhcccCCCCC--CHHHHHHHhCCC-HHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPK--SLSEVGNIFGLS-KERVRQLESR 510 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~--Tl~EIAe~LgIS-rerVRqie~r 510 (532)
.|+++|++++...--+-...++ |.+|+|+.+|+| +.+|++++.+
T Consensus 3 ~lt~~q~~i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~ 49 (202)
T 1jhf_A 3 ALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKA 49 (202)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHH
Confidence 5788888776543221111356 999999999999 9999988763
No 122
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=79.79 E-value=3.5 Score=36.23 Aligned_cols=53 Identities=13% Similarity=0.057 Sum_probs=39.5
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 457 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 457 l~~~L~~~L~--~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
+...+...|. .|+..|-.||.+.+. ..+.+.|..|||+.+|+++.+|..++.+
T Consensus 20 l~~~~~~~l~~~gLt~~q~~vL~~L~~-~~~~~~t~~eLa~~l~~~~~tvs~~v~~ 74 (147)
T 4b8x_A 20 LLGEVDAVVKPYGLTFARYEALVLLTF-SKSGELPMSKIGERLMVHPTSVTNTVDR 74 (147)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHHHT-SGGGEEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH-CCCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 3445566664 599999999887663 2235789999999999999999765544
No 123
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=79.58 E-value=11 Score=32.12 Aligned_cols=77 Identities=10% Similarity=0.108 Sum_probs=48.1
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCCcchhhhcccCCCCChhHHHHHHHHHHHHHHHHhcCCHHHH-
Q 009567 395 PDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKER- 473 (532)
Q Consensus 395 Pt~eEIA~~lgis~e~v~~ll~~~~~~iSLD~~v~~d~~~~l~d~i~d~~~~~pee~~~~~~l~~~L~~~L~~L~~rER- 473 (532)
-+..+||..+|++...|..++......-. .. ...- | ..|++.+.
T Consensus 23 ~s~~~ia~~lgis~~Tv~r~~~~~~~~g~-------~~---------~~gr--~-----------------~~l~~~~~~ 67 (141)
T 1u78_A 23 VSLHEMSRKISRSRHCIRVYLKDPVSYGT-------SK---------RAPR--R-----------------KALSVRDER 67 (141)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHSGGGTTC-------CC---------CCCC--C-----------------CSSCHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHcccccCC-------cC---------CCCC--C-----------------CcCCHHHHH
Confidence 47899999999999999998875422100 00 0000 0 01222221
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHhC--CCHHHHHHHHHH
Q 009567 474 CIVRLRFGIEDGKPKSLSEVGNIFG--LSKERVRQLESR 510 (532)
Q Consensus 474 ~VL~LRyGL~~~e~~Tl~EIAe~Lg--ISrerVRqie~r 510 (532)
.|+.+.-. ...|..+|+..|| +|.++|++++.+
T Consensus 68 ~i~~~~~~----~~~s~~~i~~~lg~~~s~~tV~r~l~~ 102 (141)
T 1u78_A 68 NVIRAASN----SCKTARDIRNELQLSASKRTILNVIKR 102 (141)
T ss_dssp HHHHHHHH----CCCCHHHHHHHTTCCSCHHHHHHHHHH
T ss_pred HHHHHHhC----CCCCHHHHHHHHCCCccHHHHHHHHHH
Confidence 23333111 4589999999999 899999998875
No 124
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=79.32 E-value=5.3 Score=34.47 Aligned_cols=48 Identities=8% Similarity=0.067 Sum_probs=36.1
Q ss_pred HHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 460 HVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 460 ~L~~~L--~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.+...+ ..|++.+..||...+. +.+.|..+||+.+|+++.+|..++.+
T Consensus 28 ~~~~~~~~~~lt~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~~vs~~l~~ 77 (152)
T 3bj6_A 28 AVERGTLREGVTVGQRAILEGLSL---TPGATAPQLGAALQMKRQYISRILQE 77 (152)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH---STTEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 344444 3699999998887653 24799999999999999999754433
No 125
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=79.21 E-value=2.9 Score=39.12 Aligned_cols=39 Identities=21% Similarity=0.362 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 468 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
+++.++.||.+-. + .+.|..|||+.+|+|+.+|++++.+
T Consensus 18 ~d~~~~~IL~~L~---~-~~~s~~eLA~~lglS~stv~~~l~~ 56 (192)
T 1uly_A 18 LEDTRRKILKLLR---N-KEMTISQLSEILGKTPQTIYHHIEK 56 (192)
T ss_dssp HSHHHHHHHHHHT---T-CCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---c-CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 6788888887654 2 4799999999999999999865443
No 126
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=79.08 E-value=5 Score=34.19 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=37.4
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 458 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 458 ~~~L~~~L~--~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
...+...+. .|++.+..||...+. .+.+.|..|||+.+|+|+.+|..+..+
T Consensus 23 ~~~~~~~~~~~~l~~~~~~iL~~l~~--~~~~~t~~~la~~l~~s~~~vs~~l~~ 75 (146)
T 2fbh_A 23 RAELDRRLSHLGLSQARWLVLLHLAR--HRDSPTQRELAQSVGVEGPTLARLLDG 75 (146)
T ss_dssp HHHHHHHTGGGCCTTTHHHHHHHHHH--CSSCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHH--cCCCCCHHHHHHHhCCChhhHHHHHHH
Confidence 334455553 589999998877632 236899999999999999999755443
No 127
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=79.03 E-value=3.9 Score=35.14 Aligned_cols=50 Identities=12% Similarity=0.072 Sum_probs=37.5
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 458 RQHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 458 ~~~L~~~L--~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
...+...+ ..|++.|..||..-+ ...+.|..|||+.+|+++.+|..+..+
T Consensus 22 ~~~~~~~~~~~glt~~q~~vL~~l~---~~~~~t~~eLa~~l~~~~~tvs~~l~~ 73 (140)
T 3hsr_A 22 IKKYTNYLKEYDLTYTGYIVLMAIE---NDEKLNIKKLGERVFLDSGTLTPLLKK 73 (140)
T ss_dssp HHHHHHHHGGGTCCHHHHHHHHHSC---TTCEEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH---HcCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 34455555 359999988887654 246899999999999999999755544
No 128
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=78.86 E-value=3.5 Score=35.73 Aligned_cols=48 Identities=10% Similarity=0.125 Sum_probs=36.5
Q ss_pred HHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 460 HVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 460 ~L~~~L--~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.+...+ ..|++.+..||...+. +.+.|..+||+.+|+|+.+|..++.+
T Consensus 25 ~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~s~~tvs~~l~~ 74 (155)
T 1s3j_A 25 EMLESMEKQGVTPAQLFVLASLKK---HGSLKVSEIAERMEVKPSAVTLMADR 74 (155)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH---HSEEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 344444 4799999999877653 24789999999999999999765443
No 129
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=78.74 E-value=4.8 Score=34.67 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=31.1
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 466 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 466 ~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
..+++.+-.-++-.. ++|.+|+|+.+|+|+.+|++++..
T Consensus 69 ~~~~~~~l~~~R~~~------glsq~~la~~~g~s~~~i~~~E~g 107 (133)
T 3o9x_A 69 ETVAPEFIVKVRKKL------SLTQKEASEIFGGGVNAFSRYEKG 107 (133)
T ss_dssp TTCCHHHHHHHHHHT------TCCHHHHHHHHCSCTTHHHHHHHT
T ss_pred cCCCHHHHHHHHHHc------CCCHHHHHHHHCCCHHHHHHHHCC
Confidence 446666655555554 699999999999999999999974
No 130
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=78.70 E-value=4.7 Score=35.00 Aligned_cols=50 Identities=22% Similarity=0.271 Sum_probs=37.5
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 458 RQHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 458 ~~~L~~~L--~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
...+...+ ..|++.+..||...+. +.+.|..|||+.+|+|+.+|.+++.+
T Consensus 33 ~~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~s~~tvs~~l~~ 84 (153)
T 2pex_A 33 HKLYRGLLKALDLTYPQYLVMLVLWE---TDERSVSEIGERLYLDSATLTPLLKR 84 (153)
T ss_dssp HHHHHHHTTTTTCCHHHHHHHHHHHH---SCSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHh---CCCcCHHHHHHHhCCCcccHHHHHHH
Confidence 34444544 3589999988877653 25799999999999999999765544
No 131
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=78.64 E-value=1.7 Score=33.74 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=21.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q 009567 488 KSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 488 ~Tl~EIAe~LgISrerVRqie~r 510 (532)
.|++|||+.+|||+.+|+.+++.
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng 23 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVING 23 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 48899999999999999998874
No 132
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=78.56 E-value=3.9 Score=35.88 Aligned_cols=51 Identities=2% Similarity=-0.014 Sum_probs=38.6
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 457 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 457 l~~~L~~~L~--~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
+...+...+. .|++.|..||..-+. ..+.|..|||+.+|+++.+|.++..+
T Consensus 35 ~~~~~~~~l~~~~lt~~q~~vL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~ 87 (159)
T 3s2w_A 35 GQIYIGKKIEPYGIGSGQFPFLMRLYR---EDGINQESLSDYLKIDKGTTARAIQK 87 (159)
T ss_dssp HHHHHHHHHGGGTCCTTTHHHHHHHHH---SCSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444555553 599999999887654 26799999999999999999765544
No 133
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=78.52 E-value=2.4 Score=33.31 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|.+++|+.+|||+.+|+++++.
T Consensus 22 ~gltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 22 KGYSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6899999999999999999999875
No 134
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=78.52 E-value=3.3 Score=35.68 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=33.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 511 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rA 511 (532)
.|++.+..||..-+. ..+.|..|||+.+|+++.+|.+++.+-
T Consensus 37 ~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~tvs~~l~~L 78 (148)
T 3nrv_A 37 GIGMTEWRIISVLSS---ASDCSVQKISDILGLDKAAVSRTVKKL 78 (148)
T ss_dssp TCCHHHHHHHHHHHH---SSSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 588888888877653 248999999999999999997655443
No 135
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=78.45 E-value=3.4 Score=34.59 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=32.5
Q ss_pred HHHHHhcCC-HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 461 VRNLLTLLN-PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 461 L~~~L~~L~-~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
+..++..|. +....||.+.. + .+.|..|||+.+|+|+.+|++ .+++|++
T Consensus 15 ~~~~~~al~~~~r~~IL~~L~---~-~~~s~~eLa~~lgis~stvs~----~L~~L~~ 64 (108)
T 2kko_A 15 VARVGKALANGRRLQILDLLA---Q-GERAVEAIATATGMNLTTASA----NLQALKS 64 (108)
T ss_dssp HHHHHHHHTTSTTHHHHHHHT---T-CCEEHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH---c-CCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 334444444 33455665433 2 578999999999999999975 4555554
No 136
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=78.44 E-value=5.1 Score=34.48 Aligned_cols=47 Identities=17% Similarity=0.362 Sum_probs=32.2
Q ss_pred HHHhcC-CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 463 NLLTLL-NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 463 ~~L~~L-~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
..+..| ++....||.+-. + .+++..|||+.+|+|+.+|++. +++|++
T Consensus 38 ~~~kaL~~~~rl~IL~~L~---~-~~~s~~ela~~lgis~stvs~~----L~~Le~ 85 (122)
T 1r1t_A 38 EFFAVLADPNRLRLLSLLA---R-SELCVGDLAQAIGVSESAVSHQ----LRSLRN 85 (122)
T ss_dssp HHHHHHCCHHHHHHHHHHT---T-CCBCHHHHHHHHTCCHHHHHHH----HHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH---c-CCCCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 334333 455566776543 2 4789999999999999999754 455554
No 137
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=78.19 E-value=3.9 Score=35.04 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=37.5
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 458 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 458 ~~~L~~~L~--~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
...+...+. .|++.+..||..-+. ..+.|..|||+.+|+++.+|.+++.+
T Consensus 23 ~~~~~~~~~~~~lt~~~~~iL~~l~~---~~~~t~~eLa~~l~~~~~~vs~~l~~ 74 (143)
T 3oop_A 23 HLFLMRSIASYDVTPEQWSVLEGIEA---NEPISQKEIALWTKKDTPTVNRIVDV 74 (143)
T ss_dssp HHHHHHHTTTSSSCHHHHHHHHHHHH---HSSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCCHhhHHHHHHH
Confidence 344455553 589999999887653 25899999999999999999755444
No 138
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=78.06 E-value=4.4 Score=35.14 Aligned_cols=47 Identities=9% Similarity=0.166 Sum_probs=36.0
Q ss_pred HHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 460 HVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 460 ~L~~~L--~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.+...+ ..|++.|..||..-. +.+.|..|||+.+|+++.+|.++..+
T Consensus 26 ~~~~~~~~~~lt~~q~~iL~~l~----~~~~t~~eLa~~l~~~~~~vs~~l~~ 74 (151)
T 3kp7_A 26 LLKDLQTEYGISAEQSHVLNMLS----IEALTVGQITEKQGVNKAAVSRRVKK 74 (151)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHH----HSCBCHHHHHHHHCSCSSHHHHHHHH
T ss_pred HHHHHhhcCCCCHHHHHHHHHHH----cCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 344444 368999998887662 37899999999999999999765544
No 139
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=77.93 E-value=3.9 Score=36.43 Aligned_cols=41 Identities=10% Similarity=0.177 Sum_probs=33.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.|++.+..||...+. ..+.|..|||+.+|+++.+|.+++.+
T Consensus 42 ~lt~~~~~iL~~L~~---~~~~t~~eLa~~l~is~~tvs~~l~~ 82 (168)
T 2nyx_A 42 NITIPQFRTLVILSN---HGPINLATLATLLGVQPSATGRMVDR 82 (168)
T ss_dssp SCCHHHHHHHHHHHH---HCSEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 799999999877653 24799999999999999999765443
No 140
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=77.90 E-value=5.7 Score=34.09 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=36.7
Q ss_pred HHHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 459 QHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 459 ~~L~~~L--~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
..+...+ ..|++.+..||..-+. ..+.|..|||+.+|+++.+|..+..+
T Consensus 18 ~~~~~~~~~~~lt~~q~~iL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~ 68 (145)
T 3g3z_A 18 NVFDKWIGQQDLNYNLFAVLYTLAT---EGSRTQKHIGEKWSLPKQTVSGVCKT 68 (145)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHH---HCSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444444 4589999999887653 24699999999999999999755443
No 141
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=77.71 E-value=2.7 Score=31.51 Aligned_cols=25 Identities=12% Similarity=0.272 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..++|+.+|||+.+|+++++.
T Consensus 15 ~glsq~~lA~~~gis~~~i~~~e~g 39 (71)
T 1zug_A 15 LKMTQTELATKAGVKQQSIQLIEAG 39 (71)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5799999999999999999999864
No 142
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=77.69 E-value=5.6 Score=35.05 Aligned_cols=51 Identities=4% Similarity=-0.032 Sum_probs=38.3
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 457 MRQHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 457 l~~~L~~~L--~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
+...+...+ ..|++.+..||..-+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 31 ~~~~~~~~l~~~glt~~q~~iL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~ 83 (162)
T 3k0l_A 31 ISKYLTEHLSALEISLPQFTALSVLAA---KPNLSNAKLAERSFIKPQSANKILQD 83 (162)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHH---CTTCCHHHHHHHHTSCGGGHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 334455555 3699999999887653 25899999999999999999765544
No 143
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=77.59 E-value=6.2 Score=33.82 Aligned_cols=40 Identities=10% Similarity=0.082 Sum_probs=32.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.|++.+..||..-+. +.+ |..|||+.+|+++.+|.+++.+
T Consensus 34 ~lt~~~~~iL~~l~~---~~~-~~~~la~~l~~~~~tvs~~l~~ 73 (144)
T 3f3x_A 34 NLSYLDFSILKATSE---EPR-SMVYLANRYFVTQSAITAAVDK 73 (144)
T ss_dssp SCCHHHHHHHHHHHH---SCE-EHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCC-CHHHHHHHHCCChhHHHHHHHH
Confidence 799999999987664 234 9999999999999999765544
No 144
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=77.35 E-value=4.5 Score=34.56 Aligned_cols=50 Identities=4% Similarity=-0.050 Sum_probs=37.2
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 458 RQHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 458 ~~~L~~~L--~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
...+...+ ..|++.+..||...+. ..+.|..+||+.+|+|+.+|..+..+
T Consensus 15 ~~~~~~~~~~~~lt~~~~~iL~~l~~---~~~~t~~~la~~l~~s~~~vs~~l~~ 66 (144)
T 1lj9_A 15 DSISNIEFKELSLTRGQYLYLVRVCE---NPGIIQEKIAELIKVDRTTAARAIKR 66 (144)
T ss_dssp HHHHHHHTGGGTCTTTHHHHHHHHHH---STTEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH---CcCcCHHHHHHHHCCCHhHHHHHHHH
Confidence 34445555 3589999988877653 25789999999999999999755443
No 145
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=77.20 E-value=3.2 Score=35.53 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=33.0
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.|++.+..||...+. +.+.|..+||+.+|+|+.+|..++.+
T Consensus 30 ~l~~~~~~iL~~l~~---~~~~~~~~la~~l~~s~~tvs~~l~~ 70 (145)
T 2a61_A 30 GITPAQFDILQKIYF---EGPKRPGELSVLLGVAKSTVTGLVKR 70 (145)
T ss_dssp TCCHHHHHHHHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCchhHHHHHHH
Confidence 589999888877653 25799999999999999999755443
No 146
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=77.15 E-value=2.8 Score=31.15 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..++|+.+|||+.+|+++++.
T Consensus 13 ~glsq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 13 LGLNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999998864
No 147
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=77.14 E-value=2.9 Score=36.72 Aligned_cols=41 Identities=5% Similarity=-0.010 Sum_probs=33.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.|++.+..||...+. +.+.|..|||+.+|+++.+|..++.+
T Consensus 49 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~is~~tvs~~l~~ 89 (162)
T 3cjn_A 49 GLSTAKMRALAILSA---KDGLPIGTLGIFAVVEQSTLSRALDG 89 (162)
T ss_dssp TCCHHHHHHHHHHHH---SCSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCChhHHHHHHHH
Confidence 589999999887663 25799999999999999999765443
No 148
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=77.09 E-value=2.5 Score=31.06 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..++|+.+|+|+.+|+++++.
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e~g 37 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIEKN 37 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999874
No 149
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=76.55 E-value=3.5 Score=30.63 Aligned_cols=25 Identities=8% Similarity=0.149 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHh-----CCCHHHHHHHHH
Q 009567 485 GKPKSLSEVGNIF-----GLSKERVRQLES 509 (532)
Q Consensus 485 ~e~~Tl~EIAe~L-----gISrerVRqie~ 509 (532)
+...|.+||++.| +||..||++.+.
T Consensus 17 ~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 17 NEIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 4689999999999 999999987766
No 150
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=76.39 E-value=3 Score=33.02 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..|+|+.+|||+.+|+++++.
T Consensus 30 ~glsq~elA~~~gis~~~is~~e~g 54 (83)
T 2a6c_A 30 SGLTQFKAAELLGVTQPRVSDLMRG 54 (83)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999864
No 151
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=76.26 E-value=3.1 Score=31.40 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..++|+.+|||+.+|+++++.
T Consensus 25 ~g~s~~~lA~~~gis~~~i~~~e~g 49 (74)
T 1y7y_A 25 KGLSQETLAFLSGLDRSYVGGVERG 49 (74)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 5799999999999999999999864
No 152
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=76.14 E-value=3.5 Score=31.50 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..++|+.+|||+.+|+++++.
T Consensus 19 ~g~sq~~lA~~~gis~~~i~~~e~g 43 (78)
T 3b7h_A 19 QNLTINRVATLAGLNQSTVNAMFEG 43 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHCT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6799999999999999999999864
No 153
>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, trans regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A
Probab=76.04 E-value=3.5 Score=41.55 Aligned_cols=44 Identities=27% Similarity=0.329 Sum_probs=37.9
Q ss_pred HhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009567 465 LTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 511 (532)
Q Consensus 465 L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rA 511 (532)
|+.||+.-+++-.+|.- ..+.|++|+|+.++||++.|..+..+.
T Consensus 241 l~~Lp~~L~e~a~lRl~---~pdaSL~ELge~l~isKSgVnhRlrKL 284 (295)
T 3hyi_A 241 LENLPEDLRRVALVRLR---NKELSLRELGKKLNLTKSQIYSKLKRI 284 (295)
T ss_dssp GGGSCHHHHHHHHHHHH---CTTSCHHHHHHTTTCCHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHH---CccccHHHHHHHhCcCHHHHHHHHHHH
Confidence 47899999999999974 478999999999999999998765543
No 154
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=75.96 E-value=3.2 Score=31.70 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..++|+.+|||+.+|++++..
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~g 46 (77)
T 2b5a_A 22 KGVSQEELADLAGLHRTYISEVERG 46 (77)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHCC
Confidence 5799999999999999999999864
No 155
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=75.80 E-value=3.7 Score=35.87 Aligned_cols=50 Identities=12% Similarity=0.061 Sum_probs=37.5
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 459 QHVRNLLT---LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 459 ~~L~~~L~---~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
..+...+. .|++.+..||...+. .+.+.|..|||+.+|+++.+|.++..+
T Consensus 33 ~~~~~~l~~~~~l~~~~~~iL~~L~~--~~~~~~~~ela~~l~i~~~tvs~~l~~ 85 (160)
T 3boq_A 33 GDLNRQLLDETGLSLAKFDAMAQLAR--NPDGLSMGKLSGALKVTNGNVSGLVNR 85 (160)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHH--CTTCEEHHHHHHHCSSCCSCHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH--cCCCCCHHHHHHHHCCChhhHHHHHHH
Confidence 33444443 699999999887742 235899999999999999999765544
No 156
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=75.77 E-value=2.4 Score=36.71 Aligned_cols=42 Identities=10% Similarity=0.222 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHhcc-cCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 468 LNPKERCIVRLRFGI-EDGKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 468 L~~rER~VL~LRyGL-~~~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
|++.+..+|...+.+ ..+.+.|..+||+.+|+|+.+|+.++.
T Consensus 2 ls~~~~~~L~~i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~ 44 (142)
T 1on2_A 2 TTPSMEMYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQ 44 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 445555555444332 223579999999999999999975444
No 157
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=75.73 E-value=7.5 Score=34.17 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=35.7
Q ss_pred HHHHHHH--hcCCHHHHHHHHHHhcccC--CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 459 QHVRNLL--TLLNPKERCIVRLRFGIED--GKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 459 ~~L~~~L--~~L~~rER~VL~LRyGL~~--~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
..+...| ..|++.|-.||...+...+ +.++|..|||+.+|+++.+|..++.+
T Consensus 20 ~~~~~~l~~~gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~ 75 (148)
T 4fx0_A 20 QAYDRALRPSGLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEV 75 (148)
T ss_dssp HHHHHHHGGGTCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 3445555 3599999998877664332 25689999999999999999866655
No 158
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=75.64 E-value=11 Score=33.99 Aligned_cols=50 Identities=28% Similarity=0.309 Sum_probs=33.4
Q ss_pred HhcCCHHHHHHHHHHhcccC-C---------CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 465 LTLLNPKERCIVRLRFGIED-G---------KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 465 L~~L~~rER~VL~LRyGL~~-~---------e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
+...+.++|-.-.+...-.. + -+.|.++||..+|+|+++|. |++++|++.
T Consensus 135 ~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvs----R~l~~L~~~ 194 (210)
T 3ryp_A 135 LAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVG----RILKMLEDQ 194 (210)
T ss_dssp HHHSCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHH----HHHHHHHHT
T ss_pred HhhCCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHH----HHHHHHHHC
Confidence 34567777755443321111 0 16799999999999999995 777777763
No 159
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=75.62 E-value=1.6 Score=34.55 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|+.++|+.+|||+.+|++++.+
T Consensus 21 ~glT~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 21 RKLSLSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp TSCCHHHHHHHHSSCHHHHHHTTTS
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6899999999999999999998765
No 160
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=75.62 E-value=2.9 Score=35.20 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|.+|+|+.+|||+.+|+++++.
T Consensus 48 ~glTQ~eLA~~~gvs~~~is~~E~G 72 (101)
T 4ghj_A 48 RDLTQSEVAEIAGIARKTVLNAEKG 72 (101)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHCC
Confidence 6899999999999999999999964
No 161
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=75.57 E-value=2.4 Score=33.15 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..|+|+.+|||+.+|+++++.
T Consensus 26 ~gltq~elA~~~gis~~~is~~e~g 50 (83)
T 3f6w_A 26 AGITQKELAARLGRPQSFVSKTENA 50 (83)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 5799999999999999999999874
No 162
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=75.55 E-value=3.2 Score=32.72 Aligned_cols=42 Identities=12% Similarity=0.148 Sum_probs=33.3
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC----CCHHHHHHHHHH
Q 009567 466 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG----LSKERVRQLESR 510 (532)
Q Consensus 466 ~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~Lg----ISrerVRqie~r 510 (532)
..|++.|..||..-+- +.+.|..||++.++ +++.+|..++.+
T Consensus 5 ~~lt~~e~~vL~~L~~---~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~r 50 (82)
T 1p6r_A 5 PQISDAELEVMKVIWK---HSSINTNEVIKELSKTSTWSPKTIQTMLLR 50 (82)
T ss_dssp CCCCHHHHHHHHHHHT---SSSEEHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc---CCCCCHHHHHHHHhhcCCccHHHHHHHHHH
Confidence 4689999999887664 35899999999997 799999755443
No 163
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=75.48 E-value=3.8 Score=32.14 Aligned_cols=25 Identities=16% Similarity=0.330 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..++|+.+|||+.+|+++++.
T Consensus 24 ~glsq~~lA~~~gis~~~i~~~e~g 48 (88)
T 2wiu_B 24 NGWTQSELAKKIGIKQATISNFENN 48 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5799999999999999999999974
No 164
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=75.46 E-value=2 Score=34.56 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
.+.|..|||+.||||..+||..+.
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~ 46 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLE 46 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHH
Confidence 578999999999999999986554
No 165
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=75.41 E-value=3 Score=33.31 Aligned_cols=25 Identities=12% Similarity=0.205 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|.+|+|+.+|||+.+|+++++.
T Consensus 26 ~gltq~elA~~~gis~~~is~~E~G 50 (86)
T 3eus_A 26 AGLTQADLAERLDKPQSFVAKVETR 50 (86)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 6799999999999999999999874
No 166
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=75.39 E-value=12 Score=34.51 Aligned_cols=49 Identities=20% Similarity=0.191 Sum_probs=35.0
Q ss_pred HhcCCHHHHHHHHH-----Hhcc-----cCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 465 LTLLNPKERCIVRL-----RFGI-----EDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 465 L~~L~~rER~VL~L-----RyGL-----~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
+...+..+|-.-.+ ++|- .-.-+.|.++||..+|+|+++|. |++++|++
T Consensus 148 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 206 (232)
T 2gau_A 148 LTQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAI----RTLSTFVS 206 (232)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHH----HHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 45678888765444 4542 00146899999999999999995 67777766
No 167
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=75.19 E-value=2.8 Score=35.71 Aligned_cols=41 Identities=10% Similarity=0.067 Sum_probs=32.9
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.|++.+..||...+. ..+.|..|||+.+|+|+.+|..++.+
T Consensus 33 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~~s~~~vs~~l~~ 73 (142)
T 2fbi_A 33 GLTEQQWRVIRILRQ---QGEMESYQLANQACILRPSMTGVLAR 73 (142)
T ss_dssp TCCHHHHHHHHHHHH---HCSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHhHHHHHHHH
Confidence 589999988877653 24799999999999999999755443
No 168
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=74.92 E-value=2.7 Score=31.11 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..++|+.+|||+.+|+++++.
T Consensus 17 ~g~s~~~lA~~~gis~~~i~~~e~g 41 (68)
T 2r1j_L 17 LKIRQAALGKMVGVSNVAISQWERS 41 (68)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 4689999999999999999999874
No 169
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=74.67 E-value=2.6 Score=32.57 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|.+++|+.+|||+.+|+++++.
T Consensus 14 ~glsq~~lA~~~gis~~~i~~~e~g 38 (77)
T 2k9q_A 14 LSLTAKSVAEEMGISRQQLCNIEQS 38 (77)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 4799999999999999999999864
No 170
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=74.55 E-value=2.8 Score=34.72 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=35.5
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 009567 466 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 516 (532)
Q Consensus 466 ~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR 516 (532)
..|++.|..|+...+-. ++++.+.+||++.+|++..+|. ++|++|-
T Consensus 16 ~~Lt~~q~~Vl~~I~~~-g~~gi~qkeLa~~~~l~~~tvt----~iLk~LE 61 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDA-GNKGIWSRDVRYKSNLPLTEIN----KILKNLE 61 (91)
T ss_dssp CCSCSSHHHHHHHHHHH-CTTCEEHHHHHHHTTCCHHHHH----HHHHHHH
T ss_pred cCCCHHHHHHHHHHHHc-CCCCcCHHHHHHHHCCCHHHHH----HHHHHHH
Confidence 56788888888877632 2368999999999999999986 5555553
No 171
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=74.36 E-value=3.6 Score=32.07 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|.+++|+.+|||+.+|+++++.
T Consensus 23 ~glsq~~lA~~~gis~~~i~~~e~g 47 (82)
T 3s8q_A 23 KGMTQEDLAYKSNLDRTYISGIERN 47 (82)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 5799999999999999999999874
No 172
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=74.08 E-value=7.5 Score=32.25 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHhh-cCchhhhh
Q 009567 486 KPKSLSEVGNIF-GLSKERVRQLESRALYRLKQSLG-GKASYGYA 528 (532)
Q Consensus 486 e~~Tl~EIAe~L-gISrerVRqie~rALkKLR~~l~-~~~l~~yl 528 (532)
-++|+.+||+.| |....+|.. |.+|+.+.+. +..++..+
T Consensus 45 t~~Sl~~IG~~fggrdHsTV~h----a~~ki~~~~~~d~~~~~~i 85 (94)
T 1j1v_A 45 TNHSLPEIGDAFGGRDHTTVLH----ACRKIEQLREESHDIKEDF 85 (94)
T ss_dssp SCCCHHHHHHHTTSCCHHHHHH----HHHHHHHHHHHCHHHHHHH
T ss_pred HCcCHHHHHHHhCCCCHHHHHH----HHHHHHHHHHhCHHHHHHH
Confidence 589999999999 899999975 5555555543 33344443
No 173
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=73.95 E-value=3.6 Score=33.64 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..|+|+.+|||+.+|.++++.
T Consensus 36 ~glTq~eLA~~~GiS~~tis~iE~G 60 (88)
T 3t76_A 36 RDMKKGELREAVGVSKSTFAKLGKN 60 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6799999999999999999999874
No 174
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=73.94 E-value=3.1 Score=35.76 Aligned_cols=42 Identities=10% Similarity=-0.023 Sum_probs=31.0
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.|++.+..||...+. .+.+.|..+||+.+|+|+.+|.+++.+
T Consensus 32 ~l~~~~~~iL~~l~~--~~~~~~~~~la~~l~i~~~~vs~~l~~ 73 (147)
T 2hr3_A 32 PVQFSQLVVLGAIDR--LGGDVTPSELAAAERMRSSNLAALLRE 73 (147)
T ss_dssp HHHHHHHHHHHHHHH--TTSCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCCHHHHHHHhCCChhhHHHHHHH
Confidence 366777777766542 126899999999999999999765443
No 175
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=73.86 E-value=2.4 Score=35.72 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=25.2
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 484 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 484 ~~e~~-Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
.|..+ |..|||+.||||+.+|| +|+++|...
T Consensus 39 ~g~~lps~~eLa~~lgVSr~tVr----~al~~L~~~ 70 (102)
T 2b0l_A 39 GNEGLLVASKIADRVGITRSVIV----NALRKLESA 70 (102)
T ss_dssp TTEEEECHHHHHHHHTCCHHHHH----HHHHHHHHT
T ss_pred CCCcCCCHHHHHHHHCcCHHHHH----HHHHHHHHC
Confidence 34555 99999999999999997 577777663
No 176
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=73.85 E-value=3.7 Score=35.18 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 469 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 469 ~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
++....||.+-.. ..++|..|||+.+|+|+.+|++++.
T Consensus 41 ~~~rl~IL~~L~~---~~~~s~~eLa~~l~is~stvs~~L~ 78 (122)
T 1u2w_A 41 DENRAKITYALCQ---DEELCVCDIANILGVTIANASHHLR 78 (122)
T ss_dssp SHHHHHHHHHHHH---SSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---CCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 4556667765541 1579999999999999999976544
No 177
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=73.72 E-value=2.1 Score=33.46 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..|+|+.+|||+.+|+++++.
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~e~g 48 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAALFNG 48 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 4689999999999999999999864
No 178
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=73.67 E-value=4.7 Score=34.45 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=31.7
Q ss_pred cCCHHHH-HHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 009567 467 LLNPKER-CIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRL 515 (532)
Q Consensus 467 ~L~~rER-~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKL 515 (532)
.+++.++ +|+.+.+- . ...+..+||+.||||+.+|+.+.+..-..+
T Consensus 7 ~~t~e~K~~iv~~~~~--~-g~~~~~~~A~~~gvs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 7 QLTFREKSRIIQEVEE--N-PDLRKGEIARRFNIPPSTLSTILKNKRAIL 53 (131)
T ss_dssp CCCHHHHHHHHHHHHH--C-TTSCHHHHHHHHTCCHHHHHHHHHTHHHHH
T ss_pred eCCHHHHHHHHHHHHH--C-CCCcHHHHHHHhCCCHHHHHHHHhchhhhc
Confidence 4666666 55555533 1 234556999999999999999987655443
No 179
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=73.52 E-value=3.7 Score=35.85 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=32.5
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.|++.+..||...+. ..+.|..|||+.+|+++.+|.+++.+
T Consensus 41 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~is~~tvs~~l~~ 81 (154)
T 2eth_A 41 DMKTTELYAFLYVAL---FGPKKMKEIAEFLSTTKSNVTNVVDS 81 (154)
T ss_dssp HSBHHHHHHHHHHHH---HCCBCHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 588888888877553 24799999999999999999765443
No 180
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=73.38 E-value=3.9 Score=34.61 Aligned_cols=49 Identities=8% Similarity=0.101 Sum_probs=37.0
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 459 QHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 459 ~~L~~~L~--~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
..+...+. .|++.+..||...+. +.+.|..|||+.+|+|+.+|.++..+
T Consensus 20 ~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~~~~ela~~l~~~~~tvs~~l~~ 70 (139)
T 3bja_A 20 KNLDKAIEQYDISYVQFGVIQVLAK---SGKVSMSKLIENMGCVPSNMTTMIQR 70 (139)
T ss_dssp HHHHHHTGGGTCCHHHHHHHHHHHH---SCSEEHHHHHHHCSSCCTTHHHHHHH
T ss_pred HHHHhhhhhcCCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCChhHHHHHHHH
Confidence 34444443 589999999887653 25799999999999999999765443
No 181
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=73.28 E-value=3.2 Score=32.10 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 468 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
+++.+-.-++.. .++|.+|+|+.+|||+.+|++++..
T Consensus 11 ~~g~~lr~~R~~------~gltq~elA~~~gvs~~tis~~E~G 47 (73)
T 3fmy_A 11 VAPEFIVKVRKK------LSLTQKEASEIFGGGVNAFSRYEKG 47 (73)
T ss_dssp CCHHHHHHHHHH------TTCCHHHHHHHHCSCTTHHHHHHTT
T ss_pred CCHHHHHHHHHH------cCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 444444444444 4699999999999999999999864
No 182
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=73.17 E-value=4.7 Score=30.21 Aligned_cols=25 Identities=20% Similarity=0.012 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhC--CCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFG--LSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~Lg--ISrerVRqie~r 510 (532)
.++|.+++|+.+| +|+.+|+++++.
T Consensus 20 ~glsq~~lA~~~g~~is~~~i~~~e~g 46 (71)
T 2ewt_A 20 QGLSLHGVEEKSQGRWKAVVVGSYERG 46 (71)
T ss_dssp TTCCHHHHHHHTTTSSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCCcCCHHHHHHHHCC
Confidence 5799999999999 999999999874
No 183
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=73.00 E-value=4 Score=31.64 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..|+|+.+|||+.+|.++++.
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~g 46 (84)
T 2ef8_A 22 ASLSQSELAIFLGLSQSDISKIESF 46 (84)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5799999999999999999999874
No 184
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=72.97 E-value=8 Score=34.46 Aligned_cols=52 Identities=10% Similarity=0.109 Sum_probs=37.9
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 457 MRQHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 457 l~~~L~~~L--~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
+...+...+ ..|++.|..||...+.. +.+.|..|||+.+|+++.+|..++.+
T Consensus 38 ~~~~~~~~l~~~glt~~q~~vL~~L~~~--~~~~t~~eLa~~l~i~~~tvs~~l~~ 91 (166)
T 3deu_A 38 WRALIDHRLKPLELTQTHWVTLHNIHQL--PPDQSQIQLAKAIGIEQPSLVRTLDQ 91 (166)
T ss_dssp HHHHHHHHTTTTTCCHHHHHHHHHHHHS--CSSEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHc--CCCCCHHHHHHHHCCCHhhHHHHHHH
Confidence 334455555 35899998888766531 35799999999999999999765443
No 185
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=72.49 E-value=3.2 Score=31.47 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..++|+.+|||+.+|+++++.
T Consensus 17 ~gls~~~lA~~~gis~~~i~~~e~g 41 (76)
T 1adr_A 17 LKIRQAALGKMVGVSNVAISQWERS 41 (76)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4689999999999999999999874
No 186
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=72.34 E-value=5.9 Score=31.14 Aligned_cols=45 Identities=11% Similarity=0.065 Sum_probs=34.0
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~L-----gISrerVRqie~rALkKLR~ 517 (532)
.++++...||.+... .+ .+.|..||++.+ ++|..||+ |.|+.|.+
T Consensus 14 ~~t~~r~~IL~~l~~--~~~~~~s~~el~~~l~~~~~~is~~TVy----R~L~~L~~ 64 (83)
T 2fu4_A 14 KVTLPRLKILEVLQE--PDNHHVSAEDLYKRLIDMGEEIGLATVY----RVLNQFDD 64 (83)
T ss_dssp CCCHHHHHHHHHHTS--GGGSSBCHHHHHHHHHHTTCCCCHHHHH----HHHHHHHH
T ss_pred CcCHHHHHHHHHHHh--CCCCCCCHHHHHHHHHHhCCCCCHhhHH----HHHHHHHH
Confidence 478888888776542 22 579999999999 99999996 55666654
No 187
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=72.07 E-value=2.6 Score=32.22 Aligned_cols=25 Identities=16% Similarity=0.062 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..|+|+.+|||+.+|.++++.
T Consensus 20 ~glsq~~lA~~~gis~~~is~~e~g 44 (73)
T 3omt_A 20 KGKTNLWLTETLDKNKTTVSKWCTN 44 (73)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4689999999999999999999874
No 188
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=71.68 E-value=6.6 Score=34.51 Aligned_cols=49 Identities=4% Similarity=0.007 Sum_probs=37.0
Q ss_pred HHHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 459 QHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 459 ~~L~~~L--~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
..+...+ ..|++.|..||..-+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 40 ~~~~~~~~~~glt~~q~~vL~~l~~---~~~~t~~eLa~~l~~~~~~vs~~l~~ 90 (161)
T 3e6m_A 40 SELNQALASEKLPTPKLRLLSSLSA---YGELTVGQLATLGVMEQSTTSRTVDQ 90 (161)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH---HSEEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3344444 4699999999887653 24899999999999999999765544
No 189
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=71.61 E-value=15 Score=32.89 Aligned_cols=27 Identities=37% Similarity=0.522 Sum_probs=23.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 487 PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 487 ~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
+.|.++||..+|+|+++|. |++++|++
T Consensus 164 ~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 190 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVG----RVLKSLEE 190 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 5899999999999999995 67777775
No 190
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=71.58 E-value=9.9 Score=33.48 Aligned_cols=51 Identities=10% Similarity=0.048 Sum_probs=37.1
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 458 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 458 ~~~L~~~L~--~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
+..+...|. .|++.+-.||..-+. .+.+.+..|||+.+|+++.+|..+..+
T Consensus 17 ~~~~~~~l~~~gLt~~q~~vL~~L~~--~~~~~~~~eLa~~l~~~~~tvs~~v~~ 69 (151)
T 4aik_A 17 RALIDHRLKPLELTQTHWVTLYNINR--LPPEQSQIQLAKAIGIEQPSLVRTLDQ 69 (151)
T ss_dssp HHHHHHHTGGGCCCHHHHHHHHHHHH--SCTTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH--cCCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 344555553 589999888866542 236789999999999999999765543
No 191
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=71.41 E-value=5.5 Score=31.73 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..|+|+.+|||+.+|.++++.
T Consensus 25 ~glsq~~lA~~~gis~~~is~~e~g 49 (91)
T 1x57_A 25 KGLTQKDLATKINEKPQVIADYESG 49 (91)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999973
No 192
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=71.40 E-value=61 Score=29.58 Aligned_cols=176 Identities=11% Similarity=0.111 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCHhhHHHHHHHHHHHhhhhhCCcCCCchhhHHHHHHHHHHHHHHHhhccccccchhHHHHH
Q 009567 298 NANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLL 377 (532)
Q Consensus 298 ~~nlrLV~sIAkrY~~~g~~~eDLiQEG~iGLikAiekFDp~kG~rFSTYA~~wIr~aI~~~ir~~~r~IRlP~~~~~~l 377 (532)
..-..++..++.++ |++ +-+.+.-.-+++-+...+.-+|.+....+.-.+.-+++
T Consensus 10 ~~a~~~I~~~~~~L---~L~--~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr-------------------- 64 (200)
T 1ais_B 10 AFALSELDRITAQL---KLP--RHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACR-------------------- 64 (200)
T ss_dssp HHHHHHHHHHHHHH---TCC--HHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHc---CCC--HHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHH--------------------
Confidence 34445566666655 333 55666666666666666666776665555544443321
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCC-CCCCcchhhhcccCCCCChhHHHHHHH
Q 009567 378 SKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVW-ADQDTTFQEITADTGVEIPDISVQKQL 456 (532)
Q Consensus 378 ~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~iSLD~~v~-~d~~~~l~d~i~d~~~~~pee~~~~~~ 456 (532)
..|...+..||+...|++..++..........+.++.+.. .+....+..+...-+. +++ + ...
T Consensus 65 ------------~~~~p~~l~di~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l--~~~-v-~~~ 128 (200)
T 1ais_B 65 ------------LLKVPRTLDEIADIARVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGL--SEK-V-RRR 128 (200)
T ss_dssp ------------HHTCCCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTC--CHH-H-HHH
T ss_pred ------------HcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCC--CHH-H-HHH
Confidence 1234678889999999999888775543322222222210 1111111122111111 111 1 111
Q ss_pred HHHHHHHHHh-----cCCHHHHH--HHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 009567 457 MRQHVRNLLT-----LLNPKERC--IVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRL 515 (532)
Q Consensus 457 l~~~L~~~L~-----~L~~rER~--VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKL 515 (532)
....++.+.. .-+|.--- .|.+---+ -|.+.|.+||+...|+|..+|+...+.-.+.|
T Consensus 129 A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~-~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l 193 (200)
T 1ais_B 129 AIEILDEAYKRGLTSGKSPAGLVAAALYIASLL-EGEKRTQREVAEVARVTEVTVRNRYKELVEKL 193 (200)
T ss_dssp HHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHH-hCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 1222333331 22333221 12121111 23789999999999999999986655444433
No 193
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=71.31 E-value=4.2 Score=30.88 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..++|+.+|||+.+|+++++.
T Consensus 22 ~g~s~~~lA~~~gis~~~i~~~e~g 46 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKSENTISRWCSN 46 (76)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999874
No 194
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=71.08 E-value=4.3 Score=32.71 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..++|+.+|||+.+|++++..
T Consensus 21 ~glsq~~lA~~~gis~~~is~~e~G 45 (94)
T 2kpj_A 21 SEKTQLEIAKSIGVSPQTFNTWCKG 45 (94)
T ss_dssp SSSCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhC
Confidence 6799999999999999999999864
No 195
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=70.97 E-value=3.5 Score=36.02 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=25.0
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 484 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 484 ~~e~~-Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
.|+.+ |..++|+.||||+.+|| +|++.|..
T Consensus 34 pG~~LPser~La~~~gVSr~tVR----eAl~~L~~ 64 (134)
T 4ham_A 34 EGEKILSIREFASRIGVNPNTVS----KAYQELER 64 (134)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCCccHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 34666 89999999999999997 68888865
No 196
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=70.91 E-value=3.9 Score=32.82 Aligned_cols=38 Identities=13% Similarity=0.227 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 469 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 469 ~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
++....||..... ..+.|..|||+.+|+|+.+|.++++
T Consensus 15 ~~~~~~iL~~L~~---~~~~~~~ela~~l~is~~tvs~~l~ 52 (100)
T 1ub9_A 15 NPVRLGIMIFLLP---RRKAPFSQIQKVLDLTPGNLDSHIR 52 (100)
T ss_dssp SHHHHHHHHHHHH---HSEEEHHHHHHHTTCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHh---cCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 4556667765431 1579999999999999999975543
No 197
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=70.77 E-value=5.2 Score=35.46 Aligned_cols=53 Identities=11% Similarity=0.136 Sum_probs=36.1
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 457 MRQHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 457 l~~~L~~~L--~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
+...+...+ ..|++.|-.||...+.. ++.+.|..|||+.+|+++.+|.+++.+
T Consensus 31 ~~~~~~~~~~~~glt~~q~~vL~~l~~~-~~~~~t~~eLa~~l~~~~~tvs~~l~~ 85 (168)
T 3u2r_A 31 MKAIEEEIFSQFELSAQQYNTLRLLRSV-HPEGMATLQIADRLISRAPDITRLIDR 85 (168)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHH-TTSCEEHHHHHHHC---CTHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHhc-CCCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 344455555 35899999998776542 236899999999999999999765544
No 198
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=70.74 E-value=4.7 Score=36.38 Aligned_cols=53 Identities=9% Similarity=0.041 Sum_probs=38.1
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 458 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 458 ~~~L~~~L~--~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
...+...+. .|++.+..||...+.-+++.+.|..|||+.+|+++.+|.+++.+
T Consensus 55 ~~~~~~~l~~~glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~ 109 (181)
T 2fbk_A 55 GREIERTYAASGLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVR 109 (181)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 334555553 59999999998876422212499999999999999999755443
No 199
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=70.72 E-value=4.3 Score=33.19 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|.+++|+.+|||+.+|++++..
T Consensus 42 ~glsq~elA~~lgvs~~~is~~E~G 66 (99)
T 2ppx_A 42 LKLTQEEFSARYHIPLGTLRDWEQG 66 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 5799999999999999999999863
No 200
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=70.51 E-value=3.7 Score=34.80 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=24.4
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 485 GKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 485 ~e~~-Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
|+.+ |..++|+.||||+.+|| +|++.|..
T Consensus 30 G~~lPs~~~La~~~~vSr~tvr----~al~~L~~ 59 (113)
T 3tqn_A 30 GEMIPSIRKISTEYQINPLTVS----KAYQSLLD 59 (113)
T ss_dssp TCEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3566 99999999999999997 67777765
No 201
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=70.48 E-value=3.4 Score=35.31 Aligned_cols=49 Identities=10% Similarity=0.013 Sum_probs=36.6
Q ss_pred HHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 460 HVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 460 ~L~~~L--~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
.+...+ ..|++.|-.||...+. .++.+.|..|||+.+|+++.+|..++.
T Consensus 25 ~~~~~~~~~~lt~~q~~vL~~l~~-~~~~~~t~~eLa~~l~~~~~tvs~~l~ 75 (127)
T 2frh_A 25 LKSLIKKEFSISFEEFAVLTYISE-NKEKEYYLKDIINHLNYKQPQVVKAVK 75 (127)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHH-TCCSEEEHHHHHHHSSSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHh-ccCCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 344444 3699999999887764 222579999999999999999975443
No 202
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=70.46 E-value=4.6 Score=33.35 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|.+|+|+.+|||+.+|+++++.
T Consensus 40 ~gltq~elA~~~gis~~~is~iE~G 64 (99)
T 3g5g_A 40 KGMTQEDLAYKSNLDRTYISGIERN 64 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 6799999999999999999999874
No 203
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=70.44 E-value=15 Score=32.98 Aligned_cols=51 Identities=20% Similarity=0.133 Sum_probs=34.6
Q ss_pred HHhcCCHHHHHHHHHHhccc-CC---------CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 464 LLTLLNPKERCIVRLRFGIE-DG---------KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 464 ~L~~L~~rER~VL~LRyGL~-~~---------e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
.+...+..+|-.-.+..... .| -+.|.++||..+|+|+++|. |++++|++.
T Consensus 106 ~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~L~~~ 166 (195)
T 3b02_A 106 HLQTGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVS----KVLADLRRE 166 (195)
T ss_dssp HHTSSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHH----HHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHH----HHHHHHHHC
Confidence 34567788776544432111 01 25899999999999999995 777778764
No 204
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=70.09 E-value=3.9 Score=33.20 Aligned_cols=41 Identities=7% Similarity=0.053 Sum_probs=31.5
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHH----HHHhCCCHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEV----GNIFGLSKERVRQLESR 510 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EI----Ae~LgISrerVRqie~r 510 (532)
.|++.+..||...+. ..+.|..|| |+.+|+++.+|.+++.+
T Consensus 5 ~lt~~q~~iL~~l~~---~~~~~~~el~~~la~~l~is~~tvs~~l~~ 49 (99)
T 1tbx_A 5 PFFYPEAIVLAYLYD---NEGIATYDLYKKVNAEFPMSTATFYDAKKF 49 (99)
T ss_dssp SSBCHHHHHHHHHTT---CTTCBHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCcCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 477788888776543 357999999 89999999999765443
No 205
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=70.03 E-value=4.4 Score=34.45 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 469 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 469 ~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
++....||.+.. + .+.+..|||+.+|+|+.+|++.++
T Consensus 20 ~~~r~~IL~~L~---~-~~~~~~eLa~~lgis~stvs~~L~ 56 (118)
T 2jsc_A 20 DPTRCRILVALL---D-GVCYPGQLAAHLGLTRSNVSNHLS 56 (118)
T ss_dssp SHHHHHHHHHHH---T-TCCSTTTHHHHHSSCHHHHHHHHH
T ss_pred CHHHHHHHHHHH---c-CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 355566776543 2 468999999999999999975443
No 206
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=70.02 E-value=10 Score=34.39 Aligned_cols=49 Identities=14% Similarity=0.089 Sum_probs=32.5
Q ss_pred hcCCHHHHHHHHHHhccc--C--CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 466 TLLNPKERCIVRLRFGIE--D--GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 466 ~~L~~rER~VL~LRyGL~--~--~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
...+.++|-.-.+...-. + .-+.|.++||..+|+|+++|. |++++|++.
T Consensus 144 ~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~L~~~ 196 (220)
T 3dv8_A 144 MWKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVIT----RMLRYFQVE 196 (220)
T ss_dssp HHSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHH----HHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHH----HHHHHHHHC
Confidence 455666665444332111 0 127899999999999999995 677777763
No 207
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=69.94 E-value=18 Score=32.59 Aligned_cols=51 Identities=20% Similarity=0.120 Sum_probs=34.0
Q ss_pred HHhcCCHHHHHHHHHHhcccC----------CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 464 LLTLLNPKERCIVRLRFGIED----------GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 464 ~L~~L~~rER~VL~LRyGL~~----------~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
.+...+..+|-.-.+...-.. .-+.|.++||..+|+|+++|. |++++|++.
T Consensus 113 ~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~L~~~ 173 (202)
T 2zcw_A 113 RLATQRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVT----KVIGELARE 173 (202)
T ss_dssp HHHHCCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHH----HHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHH----HHHHHHHHC
Confidence 345677777755433321110 125899999999999999995 677777763
No 208
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=69.66 E-value=5 Score=31.76 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=20.1
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q 009567 489 SLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 489 Tl~EIAe~LgISrerVRqie~r 510 (532)
+..++|+.||||+.+|++++..
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 5999999999999999999764
No 209
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=69.43 E-value=5.1 Score=34.19 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=33.4
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 466 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 466 ~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
..|++.+..||...+. +.+.|..|||+.+|+|+.+|.....+
T Consensus 33 ~~l~~~~~~iL~~l~~---~~~~~~~ela~~l~~~~~tvs~~l~~ 74 (142)
T 2bv6_A 33 YNLTYPQFLVLTILWD---ESPVNVKKVVTELALDTGTVSPLLKR 74 (142)
T ss_dssp HTCCHHHHHHHHHHHH---SSEEEHHHHHHHTTCCTTTHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 3699999998877653 24789999999999999999754433
No 210
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=69.12 E-value=5.5 Score=33.95 Aligned_cols=25 Identities=8% Similarity=0.270 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|++|+|+.+|||+.+|++++..
T Consensus 19 ~glSq~eLA~~~gis~~~is~iE~G 43 (112)
T 2wus_R 19 RRITLLDASLFTNINPSKLKRIEEG 43 (112)
T ss_dssp TTCCHHHHHHHSSCCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 7899999999999999999999975
No 211
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=68.98 E-value=9.5 Score=34.80 Aligned_cols=44 Identities=14% Similarity=0.241 Sum_probs=30.8
Q ss_pred hcCCHHHHHHHHHH--hcc---cCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 466 TLLNPKERCIVRLR--FGI---EDGKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 466 ~~L~~rER~VL~LR--yGL---~~~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
..+++..+.-..++ -++ ++++++|..|||+.+|||+.++.++..
T Consensus 22 r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 22 QKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp TTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 44666655555432 222 133579999999999999999999877
No 212
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=68.93 E-value=22 Score=32.42 Aligned_cols=50 Identities=24% Similarity=0.309 Sum_probs=33.3
Q ss_pred HhcCCHHHHHHHHHHhcccC-C---------CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 465 LTLLNPKERCIVRLRFGIED-G---------KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 465 L~~L~~rER~VL~LRyGL~~-~---------e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
+...+.++|-.-.+...... | -+.|.++||..+|+|+++|. |++++|++.
T Consensus 155 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvs----R~l~~L~~~ 214 (230)
T 3iwz_A 155 LAFLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAG----RVLKKLQAD 214 (230)
T ss_dssp HHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHH----HHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHH----HHHHHHHHC
Confidence 45567777755444321110 0 24799999999999999995 677777763
No 213
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=68.92 E-value=6.1 Score=36.41 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 470 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 470 ~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
+|.+.|+.+.. .++.+.|..|||+.+|||+.+|++.+.
T Consensus 21 ~R~~~Il~~L~--~~~~~~s~~eLa~~l~vS~~Ti~rdi~ 58 (187)
T 1j5y_A 21 ERLKSIVRILE--RSKEPVSGAQLAEELSVSRQVIVQDIA 58 (187)
T ss_dssp HHHHHHHHHHH--HCSSCBCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHH--HcCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 56666666543 133569999999999999999987665
No 214
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=68.49 E-value=5 Score=31.22 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESRA 511 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~rA 511 (532)
.+ |..++|+.+|||+.+|+++++.-
T Consensus 11 ~g-sq~~lA~~lgvs~~~is~~e~g~ 35 (79)
T 3bd1_A 11 LG-SVSALAASLGVRQSAISNWRARG 35 (79)
T ss_dssp HS-SHHHHHHHHTCCHHHHHHHHHHT
T ss_pred hC-CHHHHHHHHCCCHHHHHHHHHCC
Confidence 46 99999999999999999999863
No 215
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=68.11 E-value=5.3 Score=34.44 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..|+|+.+|||+.+|.++++.
T Consensus 52 ~glTQ~eLA~~lGis~~~Is~iE~G 76 (120)
T 2o38_A 52 ARLSQAAAAARLGINQPKVSALRNY 76 (120)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6899999999999999999999873
No 216
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=68.09 E-value=3.6 Score=33.32 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHhCCCHH-HHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKE-RVRQLES 509 (532)
Q Consensus 486 e~~Tl~EIAe~LgISre-rVRqie~ 509 (532)
.+.|..+||+.||||.. .||+.+.
T Consensus 24 g~~ta~eiA~~Lgit~~~aVr~hL~ 48 (79)
T 1xmk_A 24 SDSSALNLAKNIGLTKARDINAVLI 48 (79)
T ss_dssp CCEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred CCcCHHHHHHHcCCCcHHHHHHHHH
Confidence 48899999999999999 9987654
No 217
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=68.04 E-value=49 Score=27.18 Aligned_cols=36 Identities=31% Similarity=0.344 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 382 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 382 ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
++..-+.......++.++||+.+|+++..+..+...
T Consensus 11 ~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 11 EAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp HHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 333444445566789999999999999999888764
No 218
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=68.04 E-value=4.4 Score=35.17 Aligned_cols=30 Identities=17% Similarity=0.128 Sum_probs=24.8
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 484 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 484 ~~e~~-Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
.|..+ |..++|+.||||+.+|| +|++.|..
T Consensus 31 ~G~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 61 (126)
T 3by6_A 31 ANDQLPSVRETALQEKINPNTVA----KAYKELEA 61 (126)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 34666 99999999999999997 57777765
No 219
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=67.80 E-value=3.5 Score=34.25 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=22.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Q 009567 488 KSLSEVGNIFGLSKERVRQLESRAL 512 (532)
Q Consensus 488 ~Tl~EIAe~LgISrerVRqie~rAL 512 (532)
.|..+||..+|||..+|+++..+..
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~~~~ 55 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVRQHE 55 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHHH
Confidence 7999999999999999999987643
No 220
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=67.74 E-value=5.1 Score=33.63 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=33.8
Q ss_pred HhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC----CCHHHHHHHHHH
Q 009567 465 LTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG----LSKERVRQLESR 510 (532)
Q Consensus 465 L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~Lg----ISrerVRqie~r 510 (532)
+..|++.|..||...+- +.+.|..|||+.+| +|+.+|..++.+
T Consensus 5 ~~~lt~~~~~vL~~l~~---~~~~t~~ela~~l~~~~~~s~~tv~~~l~~ 51 (123)
T 1okr_A 5 TYEISSAEWEVMNIIWM---KKYASANNIIEEIQMQKDWSPKTIRTLITR 51 (123)
T ss_dssp CCCCCHHHHHHHHHHHH---HSSEEHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHh---CCCcCHHHHHHHHhccCCCcHhhHHHHHHH
Confidence 35688999888876543 25899999999999 899999765544
No 221
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=67.65 E-value=5.1 Score=36.64 Aligned_cols=24 Identities=8% Similarity=0.210 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
+++|..+||+.||+|+.+|.+++.
T Consensus 157 ~G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 157 QGLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHh
Confidence 689999999999999999987764
No 222
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=67.59 E-value=3.9 Score=34.73 Aligned_cols=49 Identities=16% Similarity=0.302 Sum_probs=33.5
Q ss_pred HHHHHhcCC-HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 461 VRNLLTLLN-PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 461 L~~~L~~L~-~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
+..++..|. |.-..||.+-.. .++|..|||+.+|+|+.+|++. +++|++
T Consensus 8 ~~~~~~al~~~~R~~Il~~L~~----~~~~~~eLa~~l~is~~tvs~h----L~~L~~ 57 (118)
T 3f6o_A 8 LNGIFQALADPTRRAVLGRLSR----GPATVSELAKPFDMALPSFMKH----IHFLED 57 (118)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHT----CCEEHHHHHTTCCSCHHHHHHH----HHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHhCcCHHHHHHH----HHHHHH
Confidence 334444444 555666665542 5789999999999999999754 455544
No 223
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=67.59 E-value=5 Score=37.19 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 468 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.+++. +-.+|-- .++|++|+|+.+|||+.+|.++++.
T Consensus 90 ~s~~~--lk~lR~~----~glTQ~elA~~LGvsr~tis~yE~G 126 (170)
T 2auw_A 90 VSHEM--FGDWMHR----NNLSLTTAAEALGISRRMVSYYRTA 126 (170)
T ss_dssp CCHHH--HHHHHHH----TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCcHH--HHHHHHH----cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 44443 4455554 6899999999999999999999874
No 224
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=67.57 E-value=7.7 Score=31.09 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 392 NHSPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 392 gr~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
|..|+..|||+.+|+|...|+.-+..
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~ 47 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQ 47 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 66899999999999999999887654
No 225
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=67.36 E-value=5.3 Score=34.89 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=24.7
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 484 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 484 ~~e~~-Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
.|+.+ |..++|+.||||+.+|| +|++.|..
T Consensus 24 ~G~~LPse~~La~~~gvSr~tVr----~Al~~L~~ 54 (129)
T 2ek5_A 24 IDQRVPSTNELAAFHRINPATAR----NGLTLLVE 54 (129)
T ss_dssp TTSCBCCHHHHHHHTTCCHHHHH----HHHHHHHT
T ss_pred CCCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 34667 99999999999999997 57777754
No 226
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=67.29 E-value=4.4 Score=34.79 Aligned_cols=42 Identities=10% Similarity=0.122 Sum_probs=32.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 511 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rA 511 (532)
.|++.+..||...+. +.+.|..+||+.+|+++.+|..+..+-
T Consensus 37 ~l~~~~~~iL~~l~~---~~~~~~~~la~~l~~~~~tvs~~l~~L 78 (147)
T 1z91_A 37 NITYPQYLALLLLWE---HETLTVKKMGEQLYLDSGTLTPMLKRM 78 (147)
T ss_dssp CCCHHHHHHHHHHHH---HSEEEHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCcCcHHHHHHHH
Confidence 488888888876553 147899999999999999997655443
No 227
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=67.23 E-value=4.1 Score=35.20 Aligned_cols=50 Identities=10% Similarity=0.156 Sum_probs=31.1
Q ss_pred HHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 460 HVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 460 ~L~~~L--~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.+...+ ..|++.|..||..-+. .++.+.|..|||+.+|+++.+|..+..+
T Consensus 29 ~~~~~~~~~glt~~q~~vL~~l~~-~~~~~~t~~eLa~~l~~~~~~vs~~l~~ 80 (148)
T 3jw4_A 29 SADARLAELGLNSQQGRMIGYIYE-NQESGIIQKDLAQFFGRRGASITSMLQG 80 (148)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH-HTTTCCCHHHHHHC------CHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHh-CCCCCCCHHHHHHHHCCChhHHHHHHHH
Confidence 344444 3699999999887664 2225899999999999999999755443
No 228
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=67.21 E-value=4.9 Score=37.02 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=23.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 487 PKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 487 ~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
+.|.++||..+|+|+++|. |++++|++.
T Consensus 163 ~~t~~~lA~~lG~sr~tvs----R~l~~L~~~ 190 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTS----TALNSLIKE 190 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHH----HHHHHHHHT
T ss_pred cCCHHHHHHHhCCcHHHHH----HHHHHHHHC
Confidence 4899999999999999995 677777763
No 229
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=67.21 E-value=4.8 Score=33.81 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|.+|+|+.+|||+.+|++++..
T Consensus 33 ~gltq~elA~~~gis~~~is~~E~G 57 (114)
T 3vk0_A 33 KGWSQEELARQCGLDRTYVSAVERK 57 (114)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999864
No 230
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=67.07 E-value=3.9 Score=38.33 Aligned_cols=32 Identities=9% Similarity=0.293 Sum_probs=25.2
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 473 RCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 473 R~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
+.|+.++- +|+|..+||+.||+|+.+|.++..
T Consensus 166 ~~i~~~~~-----~G~s~~~Ia~~l~is~~tv~r~l~ 197 (209)
T 2r0q_C 166 HRVVEMLE-----EGQAISKIAKEVNITRQTVYRIKH 197 (209)
T ss_dssp HHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHh
Confidence 34555543 679999999999999999987654
No 231
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=66.94 E-value=6.3 Score=34.02 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=24.1
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 485 GKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 485 ~e~~-Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
|+.+ |..++|+.||||+.+|| +|+..|..
T Consensus 34 g~~Lps~~~La~~~~vSr~tvr----~Al~~L~~ 63 (125)
T 3neu_A 34 EDKLPSVREMGVKLAVNPNTVS----RAYQELER 63 (125)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 4566 79999999999999997 67777765
No 232
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=66.87 E-value=5.7 Score=33.32 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..|+|+.+|||+.+|.++++.
T Consensus 26 ~gltq~eLA~~lGis~~~is~ie~G 50 (104)
T 3trb_A 26 DKMSANQLAKHLAIPTNRVTAILNG 50 (104)
T ss_dssp TSCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6899999999999999999999873
No 233
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=66.77 E-value=74 Score=33.55 Aligned_cols=34 Identities=32% Similarity=0.637 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhhCCCCcHHHHHHHcc--CCHHHHH
Q 009567 250 RLEKEKSKLQSQFGREPTLIEWAKAIG--LSCRDLK 283 (532)
Q Consensus 250 ~le~~~~~l~~~~g~~pt~~ewA~aag--~~~~~L~ 283 (532)
++.+.+..+...+|++|+..+.|...| ++.+.+.
T Consensus 285 ~lrr~~r~l~~~lgr~pt~eeiA~~l~~~v~~e~V~ 320 (438)
T 1l9z_H 285 KLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVE 320 (438)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHH
Confidence 344556677778999999999999888 8766554
No 234
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=66.70 E-value=5.7 Score=35.17 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|.+|+|+.+|||+++|+++++.
T Consensus 80 ~glTq~elA~~lGis~s~is~~E~G 104 (141)
T 3kxa_A 80 KGFTQSELATAAGLPQPYLSRIENS 104 (141)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6799999999999999999999984
No 235
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=66.62 E-value=6.8 Score=34.02 Aligned_cols=44 Identities=14% Similarity=0.085 Sum_probs=30.8
Q ss_pred cCCHHHHHHHHHHhccc-CC-CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIE-DG-KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~-~~-e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.|++.|-.|+..-+.+. .| ...|..+||+.+|+|..+|.+.+.+
T Consensus 29 gLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~ 74 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRR 74 (128)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 46777766665544332 22 3479999999999999999765444
No 236
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=66.44 E-value=5.2 Score=36.93 Aligned_cols=29 Identities=28% Similarity=0.302 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
-+.|.++||..+|+|+++|. |++++|++.
T Consensus 174 ~~~t~~~iA~~lg~sr~tvs----R~l~~L~~~ 202 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVS----RVLKRLEAH 202 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHH----HHHHHHHHT
T ss_pred cCCCHHHHHHHhCCcHHHHH----HHHHHHHHC
Confidence 36899999999999999995 777778763
No 237
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=66.25 E-value=5.9 Score=40.12 Aligned_cols=44 Identities=14% Similarity=0.221 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 470 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 470 ~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
+..++||.+-. ..+|+..|-+|||+.||||+.+|+ ++++.|++.
T Consensus 3 ~~~~~iL~~L~-~~~g~~~Sg~eLa~~lgvSr~aV~----k~i~~L~~~ 46 (323)
T 3rkx_A 3 KYSQDVLQLLY-KNKPNYISGQSIAESLNISRTAVK----KVIDQLKLE 46 (323)
T ss_dssp CHHHHHHHHHH-HHTTSCBCHHHHHHHHTSCHHHHH----HHHHHHHHT
T ss_pred hHHHHHHHHHH-hCCCCccCHHHHHHHHCCCHHHHH----HHHHHHHhc
Confidence 44566766543 123478999999999999999997 455667664
No 238
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=66.14 E-value=5.8 Score=33.02 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=33.2
Q ss_pred HHHHHhcCCHHHHH-HHHHHhcccCCCCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHH
Q 009567 461 VRNLLTLLNPKERC-IVRLRFGIEDGKPKSLSEVGNIF-GLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 461 L~~~L~~L~~rER~-VL~LRyGL~~~e~~Tl~EIAe~L-gISrerVRqie~rALkKLR~ 517 (532)
+..+++.|+.+-+. ||...+ + .+.++.||++.+ |+|+.+|.+ .+++|.+
T Consensus 4 ~~~~l~~l~~~~~~~IL~~L~---~-~~~~~~eLa~~l~~is~~tls~----~L~~Le~ 54 (107)
T 2hzt_A 4 VEATLEVIGGKWKXVILXHLT---H-GKKRTSELKRLMPNITQKMLTQ----QLRELEA 54 (107)
T ss_dssp HHHHHHHHCSTTHHHHHHHHT---T-CCBCHHHHHHHCTTSCHHHHHH----HHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHH---h-CCCCHHHHHHHhcCCCHHHHHH----HHHHHHH
Confidence 34556667776653 433322 2 579999999999 999999975 4455544
No 239
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=65.96 E-value=6.6 Score=33.06 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|.+|+|+.+|||+.+|++++..
T Consensus 35 ~gltq~elA~~~gis~~~is~~E~G 59 (111)
T 3mlf_A 35 YGLTQKELGDLFKVSSRTIQNMEKD 59 (111)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 5799999999999999999999984
No 240
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=65.78 E-value=4.7 Score=30.87 Aligned_cols=26 Identities=12% Similarity=-0.040 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESRA 511 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~rA 511 (532)
.-++.+|+++.+|||+.+|..+.++.
T Consensus 9 ~~l~~~eva~~lgvsrstiy~~~~~g 34 (66)
T 1z4h_A 9 SLVDLKFIMADTGFGKTFIYDRIKSG 34 (66)
T ss_dssp SEECHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cccCHHHHHHHHCcCHHHHHHHHHCC
Confidence 45799999999999999999988764
No 241
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=65.77 E-value=12 Score=36.45 Aligned_cols=47 Identities=15% Similarity=0.290 Sum_probs=36.3
Q ss_pred HHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 464 LLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 464 ~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
.-..|++.+..||..... + .+.|..|||+.+|+++.+|. |.+++|.+
T Consensus 146 ~~~~L~~~~~~IL~~L~~--~-~~~s~~eLA~~lglsksTv~----r~L~~Le~ 192 (244)
T 2wte_A 146 LMRDYSREEMKLLNVLYE--T-KGTGITELAKMLDKSEKTLI----NKIAELKK 192 (244)
T ss_dssp HHSCCCHHHHHHHHHHHH--H-TCBCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHH--c-CCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 345799999999986432 1 57999999999999999996 45555554
No 242
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=65.68 E-value=20 Score=33.94 Aligned_cols=28 Identities=36% Similarity=0.490 Sum_probs=23.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 487 PKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 487 ~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
+.|.++||..+|+|+++|. |++++|++.
T Consensus 217 ~lt~~~lA~~lG~sr~tvs----R~l~~L~~~ 244 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVG----RILKMLEDQ 244 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHHT
T ss_pred cCCHHHHHHHhCCCHHHHH----HHHHHHHHC
Confidence 6799999999999999995 677777763
No 243
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=65.51 E-value=12 Score=33.95 Aligned_cols=29 Identities=28% Similarity=0.306 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
-+.|.++||..+|+|+++|. |++++|++.
T Consensus 162 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~~ 190 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVS----RVLHALAEE 190 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHH----HHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHH----HHHHHHHHC
Confidence 46799999999999999995 777788763
No 244
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=65.50 E-value=54 Score=26.66 Aligned_cols=37 Identities=19% Similarity=0.132 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcC-CCCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 381 LEAKRLYIQEGN-HSPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 381 ~ka~~~l~~~~g-r~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
.++..-+.+... ..++.++||+.+|+++..+..+...
T Consensus 6 ~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 6 REACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 344444555555 6889999999999999999888753
No 245
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=65.41 E-value=14 Score=31.61 Aligned_cols=50 Identities=10% Similarity=-0.066 Sum_probs=40.1
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~L-----gISrerVRqie~rALkKLR~ 517 (532)
.|+++|..+|.+.. ...|+..|.++|.+.+ ..+..+|++.+.+.++||..
T Consensus 43 ~Lt~~E~~LL~~L~-~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~~ 97 (121)
T 2hwv_A 43 ELTHREFELLYYLA-KHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIED 97 (121)
T ss_dssp ECCHHHHHHHHHHH-HTTTCCBCHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHHCS
T ss_pred ECCHHHHHHHHHHH-HcCCeEEcHHHHHHHHcCCCCCCCccHHHHHHHHHHHHHhh
Confidence 58999999987755 3556899999999988 57888888887777777753
No 246
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=65.34 E-value=7.9 Score=33.64 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=34.7
Q ss_pred HhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC----CCHHHHHHHHHH
Q 009567 465 LTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG----LSKERVRQLESR 510 (532)
Q Consensus 465 L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~Lg----ISrerVRqie~r 510 (532)
+..|++.|..|+..-+.. +.+.|..||++.++ +++.+|..++.+
T Consensus 4 ~~~lt~~e~~vL~~L~~~--~~~~t~~el~~~l~~~~~~~~~Tvt~~l~r 51 (138)
T 2g9w_A 4 LTRLGDLERAVMDHLWSR--TEPQTVRQVHEALSARRDLAYTTVMAVLQR 51 (138)
T ss_dssp GGGCCHHHHHHHHHHHTC--SSCEEHHHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhc--CCCCCHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 357999999999876631 25899999999998 899999765544
No 247
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=65.21 E-value=4.3 Score=32.28 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..++|+.+|||+.+|+++++.
T Consensus 29 ~glsq~~lA~~~gis~~~is~~e~g 53 (92)
T 1lmb_3 29 LGLSQESVADKMGMGQSGVGALFNG 53 (92)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4689999999999999999999874
No 248
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=65.17 E-value=7.9 Score=28.87 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLE 508 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie 508 (532)
.+ |+.++|+.+|||+.+|++++
T Consensus 13 ~g-s~~~~A~~lgis~~~vs~~~ 34 (67)
T 2pij_A 13 HG-TQSALAAALGVNQSAISQMV 34 (67)
T ss_dssp TC-CHHHHHHHHTSCHHHHHHHH
T ss_pred cC-CHHHHHHHHCcCHHHHHHHH
Confidence 46 99999999999999999988
No 249
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=65.13 E-value=6.1 Score=31.94 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHhCCCHHH-HHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKER-VRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrer-VRqie~r 510 (532)
.+.|..|||+.+|+++.+ |.+++.+
T Consensus 29 ~~~t~~eLa~~l~is~~t~vs~~l~~ 54 (95)
T 2pg4_A 29 YEPSLAEIVKASGVSEKTFFMGLKDR 54 (95)
T ss_dssp CCCCHHHHHHHHCCCHHHHHTTHHHH
T ss_pred CCCCHHHHHHHHCCCchHHHHHHHHH
Confidence 479999999999999999 8755543
No 250
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=64.81 E-value=6.3 Score=32.81 Aligned_cols=25 Identities=8% Similarity=0.106 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|.+++|+.+|||+.+|+++++.
T Consensus 21 ~glsq~~lA~~~gis~~~i~~~e~g 45 (114)
T 3op9_A 21 HGLKNHQIAELLNVQTRTVAYYMSG 45 (114)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4799999999999999999999974
No 251
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=64.72 E-value=26 Score=32.66 Aligned_cols=50 Identities=30% Similarity=0.412 Sum_probs=34.0
Q ss_pred HhcCCHHHHHHHHHH-----hccc--C----CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 465 LTLLNPKERCIVRLR-----FGIE--D----GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 465 L~~L~~rER~VL~LR-----yGL~--~----~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
+...+.++|-.-.+. +|-. + .-+.|.++||..+|+|+++|. |++++|++.
T Consensus 144 ~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvs----R~l~~L~~~ 204 (250)
T 3e6c_C 144 MNTYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVS----RVLASLKRE 204 (250)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHH----HHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHH----HHHHHHHHC
Confidence 455677777544442 3311 0 147899999999999999995 677777763
No 252
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=64.69 E-value=5.6 Score=36.46 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
-+.|.++||..+|+|+++|. |++++|++
T Consensus 166 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 193 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVS----VLLNDFKK 193 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred ccCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 47899999999999999995 67777766
No 253
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=64.67 E-value=5.8 Score=36.48 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
-+.|.++||..+|+|+++|. |++++|++
T Consensus 176 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 203 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVN----KALADFAH 203 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CCCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 36899999999999999995 67777776
No 254
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=64.45 E-value=9.8 Score=35.83 Aligned_cols=49 Identities=10% Similarity=0.050 Sum_probs=35.2
Q ss_pred HHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009567 462 RNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 511 (532)
Q Consensus 462 ~~~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rA 511 (532)
.+.-.-|++.||-.=..++ |+.|...+.+++|+.+|||+..|+..+.-|
T Consensus 18 ~N~~rplS~yErg~~y~r~-L~~g~~~~Q~~lA~~~giS~a~VSR~L~~A 66 (189)
T 3mky_B 18 GSHYRPTSAYERGQRYASR-LQNEFAGNISALADAENISRKIITRCINTA 66 (189)
T ss_dssp -----CCCHHHHHHHHHHH-HHTTTTTCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHH-HhcCcccCHHHHHHHHCCCHHHHHHHHHHh
Confidence 3445667888877766666 566678899999999999999998766544
No 255
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=64.39 E-value=10 Score=33.37 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 009567 470 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYR 514 (532)
Q Consensus 470 ~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkK 514 (532)
.|.++|... | .|.+..|+|..+|+|..+|++|.++..+.
T Consensus 81 ~Rn~~I~~~-f-----~G~n~~eLArkYgLSer~I~~Ii~~~r~~ 119 (129)
T 1rr7_A 81 IRDLRIWND-F-----NGRNVSELTTRYGVTFNTVYKAIRRMRRL 119 (129)
T ss_dssp HHHHHHHHH-C-----CSSCHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-h-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 456666664 4 47899999999999999999998776553
No 256
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=64.31 E-value=12 Score=34.87 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=33.2
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.|++.+..||..-+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 45 gLt~~q~~iL~~L~~---~~~~t~~eLa~~l~i~~stvs~~l~~ 85 (207)
T 2fxa_A 45 DLNINEHHILWIAYQ---LNGASISEIAKFGVMHVSTAFNFSKK 85 (207)
T ss_dssp TCCHHHHHHHHHHHH---HTSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 689999999877653 24799999999999999999755443
No 257
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=64.22 E-value=7.2 Score=33.45 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 485 GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 485 ~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
+.+.|.+|||+.+|+|+..|++ .+.+|++
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~----il~~L~~ 52 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQ----LVSPLRN 52 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHH----HHHHHHH
T ss_pred CCcCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 4789999999999999999974 5556655
No 258
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=64.22 E-value=11 Score=31.92 Aligned_cols=50 Identities=16% Similarity=0.082 Sum_probs=41.5
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~L-----gISrerVRqie~rALkKLR~ 517 (532)
.|+++|..+|.+.. ...|+..|.++|.+.+ ..+..+|+..+.+..+||..
T Consensus 41 ~Lt~~E~~LL~~L~-~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~~ 95 (115)
T 2k4j_A 41 DLTRAEYEILSLLI-SKKGYVFSRESIAIESESINPESSNKSIDVIIGRLRSKIEK 95 (115)
T ss_dssp CSCHHHHHHHHHHH-HHCCCEECHHHHHHHTCCSSCTTCHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHH-HcCCcEEcHHHHHHHHcCCCCCCchhHHHHHHHHHHHHhhc
Confidence 48999999887755 3456889999999998 67889999988888888865
No 259
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=63.64 E-value=3.3 Score=32.27 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=20.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 009567 487 PKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 487 ~~Tl~EIAe~LgISrerVRqie~ 509 (532)
..|+.|||+..|||+.+|+.+++
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHc
Confidence 46999999999999999998765
No 260
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=63.63 E-value=7.6 Score=31.82 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..++|+.+|||+.+|++++..
T Consensus 13 ~gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 13 KGYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999976
No 261
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=63.63 E-value=6.5 Score=31.65 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..++|+.+|||+.+|+++++.
T Consensus 16 ~gltq~~lA~~~gis~~~is~~e~g 40 (99)
T 2l49_A 16 EYLSRQQLADLTGVPYGTLSYYESG 40 (99)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999874
No 262
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=63.54 E-value=5.9 Score=31.76 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..++|+.+|||+.+|+++++.
T Consensus 20 ~gltq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 20 LNVSLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 4689999999999999999999875
No 263
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=63.37 E-value=8.9 Score=32.53 Aligned_cols=25 Identities=12% Similarity=0.335 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..++|+.+|||+.+|+++++.
T Consensus 24 ~glsq~~lA~~~gis~~~is~~E~g 48 (126)
T 3ivp_A 24 QGLTREQVGAMIEIDPRYLTNIENK 48 (126)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 6799999999999999999999874
No 264
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=63.26 E-value=20 Score=33.39 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
-+.|.++||..+|+|+++|. |++++|++.
T Consensus 192 ~~lt~~~lA~~lG~sr~tvs----R~l~~L~~~ 220 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVT----RLLGDLREK 220 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHH----HHHHHHHHT
T ss_pred ccCCHHHHHHHHCCcHHHHH----HHHHHHHHC
Confidence 36899999999999999995 777788763
No 265
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=63.18 E-value=3.1 Score=31.43 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=19.7
Q ss_pred CCHHHHHHHhCCCHHHHHHHH
Q 009567 488 KSLSEVGNIFGLSKERVRQLE 508 (532)
Q Consensus 488 ~Tl~EIAe~LgISrerVRqie 508 (532)
.|..++|+.+|||+.+|++++
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHCC
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 399999999999999999996
No 266
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=63.12 E-value=5.4 Score=36.56 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
-+.|.++||..+|+|+++|. |++++|++.
T Consensus 177 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~~ 205 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFS----RIMHRLGDE 205 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHH----HHHHHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHH----HHHHHHHHC
Confidence 46799999999999999995 677788764
No 267
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=63.11 E-value=5.5 Score=32.02 Aligned_cols=25 Identities=0% Similarity=0.105 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
...|..|||+.||||..+||..+..
T Consensus 15 g~vsv~eLa~~l~VS~~TIRrdL~~ 39 (78)
T 1xn7_A 15 GRMEAAQISQTLNTPQPMINAMLQQ 39 (78)
T ss_dssp CSBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 5789999999999999999976554
No 268
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=62.31 E-value=13 Score=31.19 Aligned_cols=49 Identities=16% Similarity=0.266 Sum_probs=33.2
Q ss_pred HHHHHhcCCHHHH-HHHHHHhcccCCCCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHH
Q 009567 461 VRNLLTLLNPKER-CIVRLRFGIEDGKPKSLSEVGNIF-GLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 461 L~~~L~~L~~rER-~VL~LRyGL~~~e~~Tl~EIAe~L-gISrerVRqie~rALkKLR~ 517 (532)
+..++..+..+-+ .||..... .+.+..||++.+ |+|+.+|.+ .+++|.+
T Consensus 12 ~~~~l~~l~~~~~~~IL~~L~~----~~~~~~eLa~~l~~is~~tvs~----~L~~Le~ 62 (112)
T 1z7u_A 12 INLALSTINGKWKLSLMDELFQ----GTKRNGELMRALDGITQRVLTD----RLREMEK 62 (112)
T ss_dssp HHHHHHTTCSTTHHHHHHHHHH----SCBCHHHHHHHSTTCCHHHHHH----HHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHHh----CCCCHHHHHHHhccCCHHHHHH----HHHHHHH
Confidence 4456677766544 34443332 479999999999 999999975 4455544
No 269
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=62.16 E-value=3.6 Score=39.24 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=31.8
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCH--HHHHHHhCCCHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSL--SEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl--~EIAe~LgISrerVRqie~ 509 (532)
.|++.+..++..-|.|.. ++.|. .+||+.+|+|+.+|+..+.
T Consensus 3 ~lt~~~e~~L~~L~~l~~-~~~~~~~~~La~~l~vs~~tvs~~l~ 46 (230)
T 1fx7_A 3 ELVDTTEMYLRTIYDLEE-EGVTPLRARIAERLDQSGPTVSQTVS 46 (230)
T ss_dssp TTSSHHHHHHHHHHHHHH-HTSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh-cCCCCcHHHHHHHHCcCHHHHHHHHH
Confidence 578888888877766543 24555 9999999999999975443
No 270
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=61.86 E-value=59 Score=27.64 Aligned_cols=64 Identities=14% Similarity=0.140 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 346 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 346 TYA~~wIr~aI~~~ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
.|..+.+.+.+.+.+........++..-+..+.-+ ...+...+..+||+.+|++...+..++..
T Consensus 14 ~~~l~~~~~~~~~~~~~~l~~~glt~~q~~vL~~l--------~~~~~~~t~~eLa~~l~i~~~tvs~~l~~ 77 (150)
T 3fm5_A 14 GFLLSRVGGMVLGAVNKALVPTGLRVRSYSVLVLA--------CEQAEGVNQRGVAATMGLDPSQIVGLVDE 77 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHH--------HHSTTCCCSHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH--------HhCCCCcCHHHHHHHHCCCHhHHHHHHHH
Confidence 34455555556666555444444554444333332 12332358999999999999999888764
No 271
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=61.82 E-value=5.5 Score=34.63 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHhC-----CCHHHHHHHHH
Q 009567 485 GKPKSLSEVGNIFG-----LSKERVRQLES 509 (532)
Q Consensus 485 ~e~~Tl~EIAe~Lg-----ISrerVRqie~ 509 (532)
+.++|++|+|+.+| ||+..|.++++
T Consensus 22 ~~~lT~~elA~~~~~~G~~iS~s~is~iE~ 51 (123)
T 3qwg_A 22 RGPHTSAEVIAALKAEGITMSAPYLSQLRS 51 (123)
T ss_dssp TCSCCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHcccCCCcCHHHHHHHHc
Confidence 46899999999998 99999999996
No 272
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=61.50 E-value=7.8 Score=36.56 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=25.6
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 484 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 484 ~~e~~-Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
.|+.+ |-.|+|+.||||+.+|| .||+.|..
T Consensus 27 pG~~LPsE~eLa~~~gVSR~tVR----eAL~~L~~ 57 (239)
T 1hw1_A 27 PGTILPAERELSELIGVTRTTLR----EVLQRLAR 57 (239)
T ss_dssp TTSBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCCCCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 45778 89999999999999997 67777765
No 273
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=61.46 E-value=7.8 Score=37.11 Aligned_cols=30 Identities=33% Similarity=0.556 Sum_probs=25.9
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 484 DGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 484 ~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
.|+.++..++|+.||||+.+|| +||+.|..
T Consensus 46 pG~~L~e~~La~~lgVSr~~VR----eAL~~L~~ 75 (237)
T 3c7j_A 46 SGTALRQQELATLFGVSRMPVR----EALRQLEA 75 (237)
T ss_dssp TTCBCCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CcCeeCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 4578899999999999999997 67777765
No 274
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=60.81 E-value=6.3 Score=36.67 Aligned_cols=27 Identities=7% Similarity=0.257 Sum_probs=23.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 487 PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 487 ~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
+.|.++||..+|+|+++|. |++++|++
T Consensus 186 ~~t~~~lA~~lG~sr~tvs----R~l~~l~~ 212 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNIS----KTLNELQD 212 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCChhHHH----HHHHHHHH
Confidence 5799999999999999995 77777765
No 275
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=60.61 E-value=8.8 Score=32.27 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=33.9
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC----CCHHHHHHHHHHH
Q 009567 466 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG----LSKERVRQLESRA 511 (532)
Q Consensus 466 ~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~Lg----ISrerVRqie~rA 511 (532)
..|++.|..|+..-+- ..+.|..|||+.++ ++..+|..++.+-
T Consensus 6 ~~Lt~~q~~vL~~L~~---~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rL 52 (126)
T 1sd4_A 6 VEISMAEWDVMNIIWD---KKSVSANEIVVEIQKYKEVSDKTIRTLITRL 52 (126)
T ss_dssp CCCCHHHHHHHHHHHH---SSSEEHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh---cCCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Confidence 4689999999887664 24799999999997 5899997665543
No 276
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=60.22 E-value=9 Score=33.25 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESRA 511 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~rA 511 (532)
.++|++|+|+.+|+|+.+|+++++.-
T Consensus 15 ~gltq~elA~~~gis~~~is~iE~g~ 40 (130)
T 3fym_A 15 LGMTLTELEQRTGIKREMLVHIENNE 40 (130)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCCC
Confidence 68999999999999999999999854
No 277
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=60.16 E-value=8.6 Score=29.00 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=17.3
Q ss_pred CHHHHHHHhCCCHHHHHHHH
Q 009567 489 SLSEVGNIFGLSKERVRQLE 508 (532)
Q Consensus 489 Tl~EIAe~LgISrerVRqie 508 (532)
+..+.|+.||||+.++...+
T Consensus 35 n~~~aA~~LGIsr~tL~rkl 54 (61)
T 1g2h_A 35 STRKLAQRLGVSHTAIANKL 54 (61)
T ss_dssp SHHHHHHHTTSCTHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 78899999999999987554
No 278
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=60.13 E-value=7 Score=34.30 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
.+.|..+||+.||||+.+|+..+.
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~ 76 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLK 76 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHH
Confidence 578999999999999999975444
No 279
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=60.08 E-value=9.4 Score=35.46 Aligned_cols=41 Identities=22% Similarity=0.123 Sum_probs=32.5
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 466 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 466 ~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
..|+|-|+-....++. + .++|..+||+.+|+|+.+|++++.
T Consensus 34 edL~piE~A~a~~~L~-~--~G~t~eeiA~~lG~s~s~V~~~Lr 74 (178)
T 1r71_A 34 NELTPREIADFIGREL-A--KGKKKGDIAKEIGKSPAFITQHVT 74 (178)
T ss_dssp TCCCHHHHHHHHHHHH-H--TTCCHHHHHHHHTCCHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHH-H--cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 5688888777655542 2 479999999999999999998754
No 280
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=59.95 E-value=11 Score=33.40 Aligned_cols=47 Identities=13% Similarity=-0.048 Sum_probs=35.5
Q ss_pred cCCHHHHHHHHHHhcccC-C-CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIED-G-KPKSLSEVGNIFGLSKERVRQLESRALY 513 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~-~-e~~Tl~EIAe~LgISrerVRqie~rALk 513 (532)
.|++.|--||...+.+.+ | ...|.++||+.+|+|...|.+++.+-++
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~ 77 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQ 77 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 588888877776665532 2 5579999999999999999766655444
No 281
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=59.59 E-value=6.9 Score=32.70 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..++|+.+|||+.+|+++++.
T Consensus 40 ~glsq~~lA~~~gis~~~is~~E~g 64 (117)
T 3f52_A 40 KGVTLRELAEASRVSPGYLSELERG 64 (117)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 4689999999999999999999864
No 282
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=59.56 E-value=7.1 Score=36.53 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=29.4
Q ss_pred HHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 475 IVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 475 VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
|+.-.| ..|+.++..++|+.||||+..|| .||++|...
T Consensus 25 I~~g~l--~pG~~L~e~~La~~lgVSRtpVR----EAL~~L~~e 62 (218)
T 3sxy_A 25 ILNHEL--KLGEKLNVRELSEKLGISFTPVR----DALLQLATE 62 (218)
T ss_dssp HHTTSS--CTTCEECHHHHHHHHTCCHHHHH----HHHHHHHHH
T ss_pred HHhCCC--CCCCEeCHHHHHHHHCCCHHHHH----HHHHHHHHC
Confidence 444433 24578899999999999999997 688888663
No 283
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=59.38 E-value=5 Score=37.23 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
-++|.++||..+|+|+++|. |++++|++
T Consensus 177 l~~t~~~iA~~lg~sr~tvs----R~l~~L~~ 204 (237)
T 3fx3_A 177 LPYDKMLIAGRLGMKPESLS----RAFSRLKA 204 (237)
T ss_dssp CCSCTHHHHHHTTCCHHHHH----HHHHHHGG
T ss_pred ecCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 36789999999999999996 66666665
No 284
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=59.15 E-value=2 Score=43.78 Aligned_cols=43 Identities=12% Similarity=0.112 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 009567 468 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 513 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALk 513 (532)
+.+++..||...|. ..+.|.+|||+.||+|+.+||..+.+.-+
T Consensus 18 ~~~r~~~iL~~l~~---~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~ 60 (345)
T 2o0m_A 18 VLQERFQILRNIYW---MQPIGRRSLSETMGITERVLRTETDVLKQ 60 (345)
T ss_dssp ----------------------------------------------
T ss_pred hhHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56677777766543 26899999999999999999977765433
No 285
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=58.79 E-value=4.9 Score=36.44 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
+-+|+.|+|+.||||+.+|+++++.
T Consensus 30 ~~LTv~EVAe~LgVs~srV~~LIr~ 54 (148)
T 2kfs_A 30 PTYDLPRVAELLGVPVSKVAQQLRE 54 (148)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHT
T ss_pred ceEcHHHHHHHhCCCHHHHHHHHHC
Confidence 4579999999999999999987653
No 286
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=58.75 E-value=11 Score=35.48 Aligned_cols=39 Identities=10% Similarity=0.209 Sum_probs=27.6
Q ss_pred HHHHHhccc-CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 475 IVRLRFGIE-DGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 475 VL~LRyGL~-~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
.|..-|.|. .+.+.+..+||+.||+|+.+|+. ++++|.+
T Consensus 7 YL~~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~----~l~~Le~ 46 (214)
T 3hrs_A 7 YLKCLYELGTRHNKITNKEIAQLMQVSPPAVTE----MMKKLLA 46 (214)
T ss_dssp HHHHHHHTTSSCSCCCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHHCCChhHHHH----HHHHHHH
Confidence 344444443 35789999999999999999975 4555544
No 287
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=58.72 E-value=40 Score=27.59 Aligned_cols=24 Identities=4% Similarity=0.050 Sum_probs=20.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhc
Q 009567 395 PDKEDLARRVGITVEKLERLIFIT 418 (532)
Q Consensus 395 Pt~eEIA~~lgis~e~v~~ll~~~ 418 (532)
-+..+||..+|++...|..++...
T Consensus 34 ~s~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 34 IRPCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 478999999999999999888654
No 288
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=58.54 E-value=6.7 Score=34.56 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHhC-----CCHHHHHHHHH
Q 009567 485 GKPKSLSEVGNIFG-----LSKERVRQLES 509 (532)
Q Consensus 485 ~e~~Tl~EIAe~Lg-----ISrerVRqie~ 509 (532)
+.++|++|+|+.+| ||+..|.++++
T Consensus 24 ~~~~T~~elA~~~~~~G~~is~s~is~~E~ 53 (135)
T 3r1f_A 24 RGPHTSAEVIAALKAEGITMSAPYLSQLRS 53 (135)
T ss_dssp SCCCCHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHcccCCCcCHHHHHHHHC
Confidence 46899999999999 99999999996
No 289
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=58.42 E-value=6.5 Score=32.19 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..++|+.+|||+.+|+++++.
T Consensus 30 ~gltq~~lA~~~gis~~~is~~e~g 54 (104)
T 3cec_A 30 LDINTANFAEILGVSNQTIQEVING 54 (104)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4689999999999999999999874
No 290
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=58.30 E-value=9.6 Score=32.64 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHh--CCCHHHHHHHHHH
Q 009567 468 LNPKERCIVRLRFGIEDGKPKSLSEVGNIF--GLSKERVRQLESR 510 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~e~~Tl~EIAe~L--gISrerVRqie~r 510 (532)
+++..+.||.+--- + .+.|..+||+.+ |+|+.+|++++.+
T Consensus 11 md~~d~~IL~~L~~--~-g~~s~~eLA~~l~~giS~~aVs~rL~~ 52 (111)
T 3b73_A 11 MTIWDDRILEIIHE--E-GNGSPKELEDRDEIRISKSSVSRRLKK 52 (111)
T ss_dssp CCHHHHHHHHHHHH--H-SCBCHHHHHTSTTCCSCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH--c-CCCCHHHHHHHHhcCCCHHHHHHHHHH
Confidence 67777888876421 1 389999999999 9999999876543
No 291
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=58.20 E-value=8.8 Score=32.00 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..++|+.+|||+.+|++++..
T Consensus 48 ~glsq~elA~~~gis~~~is~~E~G 72 (107)
T 2jvl_A 48 PTMTQAELGKEIGETAATVASYERG 72 (107)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6799999999999999999999863
No 292
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=57.86 E-value=15 Score=29.53 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 468 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
+++.+..+|.-.|--+.. ......+||..+|+|+..|.........|.|+.
T Consensus 10 fT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 10 KTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 566677777777653321 345678899999999999999999998888764
No 293
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=57.84 E-value=5.8 Score=31.26 Aligned_cols=25 Identities=16% Similarity=0.417 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.-+|.+|+|+.|||++.+|+++...
T Consensus 15 ~~LTi~EaAeylgIg~~~l~~L~~~ 39 (70)
T 1y6u_A 15 YTLTIEEASKYFRIGENKLRRLAEE 39 (70)
T ss_dssp SEEEHHHHHHHTCSCHHHHHHHHHH
T ss_pred ceeCHHHHHHHHCcCHHHHHHHHHc
Confidence 4579999999999999999988754
No 294
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=57.77 E-value=40 Score=28.24 Aligned_cols=64 Identities=11% Similarity=0.159 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 347 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 347 YA~~wIr~aI~~~ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
|..+.+.+.+.+.+........++..-+..+.-+ ....+...+..+||+.+|++...+..++..
T Consensus 7 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~vL~~l-------~~~~~~~~t~~ela~~l~~~~~tvs~~l~~ 70 (139)
T 3eco_A 7 YLFRMISHEMKQKADQKLEQFDITNEQGHTLGYL-------YAHQQDGLTQNDIAKALQRTGPTVSNLLRN 70 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHH-------HHSTTTCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-------HhcCCCCcCHHHHHHHhCCCcccHHHHHHH
Confidence 4444555555555555444444554444333332 122223568999999999999999888754
No 295
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=57.76 E-value=7.2 Score=30.24 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 009567 487 PKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 487 ~~Tl~EIAe~LgISrerVRqie~ 509 (532)
..|..++|+.||||+.+|++++.
T Consensus 13 ~~sq~~~A~~Lgvsq~aVS~~~~ 35 (65)
T 2cw1_A 13 DKNQEYAARALGLSQKLIEEVLK 35 (65)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHH
T ss_pred HcCHHHHHHHhCCCHHHHHHHHH
Confidence 34999999999999999999873
No 296
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=57.32 E-value=35 Score=29.00 Aligned_cols=73 Identities=7% Similarity=0.091 Sum_probs=42.1
Q ss_pred hhhhCCcCCCchhhHHHHHHHHHHHHHHHhhc-cccccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHH
Q 009567 333 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHS-RTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 411 (532)
Q Consensus 333 iekFDp~kG~rFSTYA~~wIr~aI~~~ir~~~-r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v 411 (532)
..+|++.. +-.|..+++.+.+.+.+.+.. ....++..-+..+.-+ ...+ ..+..+||+.+|++...+
T Consensus 4 M~~~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l--------~~~~-~~t~~ela~~l~~~~~tv 71 (148)
T 3nrv_A 4 MQKINIDR---HATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVL--------SSAS-DCSVQKISDILGLDKAAV 71 (148)
T ss_dssp -CCSCGGG---CHHHHHHHHHHHHHHC----CCGGGTCCHHHHHHHHHH--------HHSS-SBCHHHHHHHHTCCHHHH
T ss_pred cccccHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH--------HcCC-CCCHHHHHHHHCCCHHHH
Confidence 34455542 345666666666666665433 2234544444444332 2233 678999999999999999
Q ss_pred HHHHHh
Q 009567 412 ERLIFI 417 (532)
Q Consensus 412 ~~ll~~ 417 (532)
..++..
T Consensus 72 s~~l~~ 77 (148)
T 3nrv_A 72 SRTVKK 77 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 297
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=57.27 E-value=3.5 Score=34.08 Aligned_cols=30 Identities=30% Similarity=0.484 Sum_probs=23.5
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 484 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 484 ~~e~~-Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
.|..+ |..|||+.||||+.+|++ |++.|..
T Consensus 31 ~g~~lps~~eLa~~~~vSr~tvr~----al~~L~~ 61 (102)
T 1v4r_A 31 PGDTLPSVADIRAQFGVAAKTVSR----ALAVLKS 61 (102)
T ss_dssp TTSBCCCHHHHHHHSSSCTTHHHH----HTTTTTT
T ss_pred CcCCCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 34666 999999999999999974 5555543
No 298
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=57.22 E-value=22 Score=28.65 Aligned_cols=50 Identities=8% Similarity=0.010 Sum_probs=38.8
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~L-----gISrerVRqie~rALkKLR~ 517 (532)
.|+++|..+|.+.. ...|+..|-++|.+.+ ..+..+|++.+.+-.+||..
T Consensus 22 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~ 76 (96)
T 3rjp_A 22 SLTKREYDLLNILM-TNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKIDI 76 (96)
T ss_dssp ECCHHHHHHHHHHH-HTTTSCBCHHHHHHHHSSSCSSCCTHHHHHHHHHHHHHHCC
T ss_pred EcCHHHHHHHHHHH-hCCCeeEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhcc
Confidence 58999999988765 3556889999999987 26778888777777666653
No 299
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=57.20 E-value=7.1 Score=36.73 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|.+|+|+.+|+|+.+|+++++.
T Consensus 29 ~g~t~~~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 29 LGLSQESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp TTCCSHHHHHHHTSCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6789999999999999999999875
No 300
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=57.11 E-value=10 Score=30.62 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHH----HHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKER----VRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrer----VRqie~r 510 (532)
.++|..|+|+.+|||+.+ |+++++.
T Consensus 13 ~glsq~~lA~~~gis~~~~~~~is~~E~g 41 (98)
T 3lfp_A 13 AGISQEKLGVLAGIDEASASARMNQYEKG 41 (98)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCcchhhhHHHHHHCC
Confidence 578999999999999999 9988875
No 301
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=56.82 E-value=9 Score=31.77 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..++|+.+|||+.+|+++++.
T Consensus 23 ~glsq~~lA~~~gis~~~is~~e~g 47 (113)
T 2eby_A 23 LDLKINELAELLHVHRNSVSALINN 47 (113)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6899999999999999999999874
No 302
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=56.59 E-value=6.8 Score=38.32 Aligned_cols=22 Identities=9% Similarity=0.231 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQL 507 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqi 507 (532)
.+.|..+||+..|||+.++..+
T Consensus 139 ~~~T~~~IA~~AGvs~gtlY~y 160 (311)
T 4ich_A 139 HNVRIHDIASELGTSNATIHYH 160 (311)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHH
T ss_pred ccCCHHHHHHHhCCCchhHHHh
Confidence 6799999999999999999765
No 303
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=56.50 E-value=7.5 Score=34.85 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 469 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 469 ~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
+|.-..||.+-.. .++|..|||+.+|+|+.+|++. |++|++
T Consensus 57 ~p~R~~IL~~L~~----~~~t~~eLa~~lgls~stvs~h----L~~L~~ 97 (151)
T 3f6v_A 57 EPTRRRLVQLLTS----GEQTVNNLAAHFPASRSAISQH----LRVLTE 97 (151)
T ss_dssp SHHHHHHHHHGGG----CCEEHHHHHTTSSSCHHHHHHH----HHHHHH
T ss_pred CHHHHHHHHHHHh----CCCCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 3555566655432 5799999999999999999755 445544
No 304
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=55.99 E-value=6.5 Score=33.05 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=23.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHH
Q 009567 487 PKSLSEVGNIFGLSKERVRQLESRAL 512 (532)
Q Consensus 487 ~~Tl~EIAe~LgISrerVRqie~rAL 512 (532)
++|..|+|+.+|||..++|.++..++
T Consensus 1 ~~~i~e~A~~~gvs~~tLR~ye~~Gl 26 (108)
T 2vz4_A 1 SYSVGQVAGFAGVTVRTLHHYDDIGL 26 (108)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 37899999999999999999988754
No 305
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=55.87 E-value=5.4 Score=30.58 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=21.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHH
Q 009567 488 KSLSEVGNIFGLSKERVRQLESRA 511 (532)
Q Consensus 488 ~Tl~EIAe~LgISrerVRqie~rA 511 (532)
+|.+|+|+.||||+.||+++....
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~G 26 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQG 26 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCC
Confidence 578999999999999999887664
No 306
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.61 E-value=29 Score=27.31 Aligned_cols=51 Identities=10% Similarity=0.121 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHhcccC---C--CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 468 LNPKERCIVRLRFGIED---G--KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~---~--e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
+++.+..+|...|--+. . ......+||..+|++...|+.+......|.|..
T Consensus 15 ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 15 FSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 57778888888875210 0 012457899999999999999999988888774
No 307
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=55.55 E-value=18 Score=27.65 Aligned_cols=51 Identities=18% Similarity=0.390 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 468 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
+++.+..+|...|-.+.. ......+||..+|++...|..+...-..|.|..
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da1_A 14 ITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQS 65 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhh
Confidence 566666777777653321 344678999999999999999998888877754
No 308
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis}
Probab=55.39 E-value=16 Score=30.47 Aligned_cols=50 Identities=20% Similarity=0.187 Sum_probs=39.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~L-----gISrerVRqie~rALkKLR~ 517 (532)
.|+++|..+|.+.. ...|+..|.++|.+.+ ..+..+|+..+.+..+||..
T Consensus 34 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 88 (110)
T 2pmu_A 34 SLSPTEFTLLRYFV-INAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDT 88 (110)
T ss_dssp CCCHHHHHHHHHHH-HTTTSCBCHHHHHHHHSCTTCCSSSCHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHH-HCCCEEEcHHHHHHHHcCCCCCCccchHHHHHHHHHHHhcc
Confidence 48999999887755 3556899999999988 56778888888777777753
No 309
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=55.21 E-value=11 Score=34.28 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|++|+|+.+|||+.+|+++++.
T Consensus 22 ~g~s~~~la~~~gis~~~ls~~e~g 46 (198)
T 2bnm_A 22 VKMDHAALASLLGETPETVAAWENG 46 (198)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6799999999999999999999974
No 310
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=55.20 E-value=21 Score=26.11 Aligned_cols=51 Identities=6% Similarity=0.070 Sum_probs=37.3
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
.+++.+..+|...|.-+.. ....-.+||..+|+|...|+.+...-..|.|+
T Consensus 3 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 3 SFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 4677777888877753321 22345789999999999999998887777765
No 311
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=54.93 E-value=12 Score=35.48 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=25.5
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 484 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 484 ~~e~~-Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
.|+.+ +-.++|+.||||+..|| .||+.|...
T Consensus 24 pG~~LpsE~~La~~lgVSRtpVR----EAL~~L~~~ 55 (239)
T 2di3_A 24 IGDHLPSERALSETLGVSRSSLR----EALRVLEAL 55 (239)
T ss_dssp TTCBCCCHHHHHHHHTCCHHHHH----HHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHCCCHHHHH----HHHHHHHHC
Confidence 45778 68899999999999997 678877653
No 312
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=54.92 E-value=81 Score=25.29 Aligned_cols=31 Identities=6% Similarity=-0.022 Sum_probs=24.4
Q ss_pred HHHhcCC-CCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 387 YIQEGNH-SPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 387 l~~~~gr-~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
+...... .++.++||+.+|+++..+..+...
T Consensus 11 i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 11 IEESYTDSQFTLSVLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp HHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3344444 789999999999999999888753
No 313
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=54.89 E-value=26 Score=27.64 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCC---CCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 009567 454 KQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGK---PKSLSEVGNIFGLSKERVRQLESRALYRLK 516 (532)
Q Consensus 454 ~~~l~~~L~~~L~~L~~rER~VL~LRyGL~~~e---~~Tl~EIAe~LgISrerVRqie~rALkKLR 516 (532)
...+...|. ..++++++.|....-|--|.. ..++.|||..+|++.+.|. ++|+.|+
T Consensus 15 ~ehL~~Ql~---~~~~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve----~vL~~lQ 73 (76)
T 2k9l_A 15 LEELQQNIK---LELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELE----KVRQKVL 73 (76)
T ss_dssp HHHHHHHHH---HHCCTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHH----HHHHHHH
T ss_pred HHHHHHHHc---ccCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHH----HHHHHHh
Confidence 444555554 368999998877655432323 4689999999999999885 4555543
No 314
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=54.77 E-value=19 Score=29.74 Aligned_cols=50 Identities=14% Similarity=0.059 Sum_probs=39.9
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~L-----gISrerVRqie~rALkKLR~ 517 (532)
.|+++|..+|.+.. ...|+..|.++|.+.+ ..+..+|+..+.+..+||..
T Consensus 31 ~Lt~~E~~lL~~L~-~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 85 (106)
T 1gxq_A 31 EMGPTEFKLLHFFM-THPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEP 85 (106)
T ss_dssp CCCHHHHHHHHHHH-HSCSSEECHHHHHHHHTCSSSCCCTHHHHHHHHHHHHHHGG
T ss_pred EcCHHHHHHHHHHH-HCCCeeEcHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhcc
Confidence 48999999988765 3556889999999988 46788888888877777754
No 315
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=54.55 E-value=5.5 Score=37.87 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=31.1
Q ss_pred cCCHHHHHHHHHHhcccC-CCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIED-GKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~-~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
.|++.+..+|...|.+.. |...+..+||+.||+++.+|.+++.
T Consensus 3 ~lt~~~e~yL~~i~~l~~~~~~~~~~~la~~l~vs~~tvs~~l~ 46 (226)
T 2qq9_A 3 DLVATTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVA 46 (226)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCCCccHHHHHHHHCCCHHHHHHHHH
Confidence 467777788877776642 2233459999999999999976443
No 316
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=54.49 E-value=19 Score=29.53 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESRA 511 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~rA 511 (532)
++.|+.+||+.+|+|+.++.+..++.
T Consensus 20 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 20 EGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 68999999999999999998887765
No 317
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=54.43 E-value=16 Score=36.61 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 469 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 469 ~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
.++...|+.+. .++...|.+|||+.||||+.+|++.+.
T Consensus 4 ~~r~~~Il~~L---~~~~~~s~~eLa~~l~vS~~ti~r~l~ 41 (321)
T 1bia_A 4 NTVPLKLIALL---ANGEFHSGEQLGETLGMSRAAINKHIQ 41 (321)
T ss_dssp CHHHHHHHHHH---TTSSCBCHHHHHHHHTSCHHHHHHHHH
T ss_pred chHHHHHHHHH---HcCCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 45666676654 244679999999999999999986554
No 318
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=54.38 E-value=5.4 Score=32.89 Aligned_cols=25 Identities=4% Similarity=0.046 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
...|..|||+.||||..+||..+.+
T Consensus 15 g~vsv~eLA~~l~VS~~TIRrDL~~ 39 (87)
T 2k02_A 15 GRMEAKQLSARLQTPQPLIDAMLER 39 (87)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 4789999999999999999976554
No 319
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=54.25 E-value=12 Score=34.11 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|++++|+.+|||+.+|+++++.
T Consensus 23 ~gltq~~lA~~~gis~~~is~~e~g 47 (192)
T 1y9q_A 23 RGLSLDATAQLTGVSKAMLGQIERG 47 (192)
T ss_dssp TTCCHHHHHHHHSSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999974
No 320
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=54.14 E-value=8.4 Score=35.94 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=23.5
Q ss_pred CCCHHHHHHHhCCCH-HHHHHHHHHHHHHHHH
Q 009567 487 PKSLSEVGNIFGLSK-ERVRQLESRALYRLKQ 517 (532)
Q Consensus 487 ~~Tl~EIAe~LgISr-erVRqie~rALkKLR~ 517 (532)
+.|.++||..+|+|+ ++|. |++++|++
T Consensus 169 ~~t~~~lA~~lG~sr~etvs----R~l~~l~~ 196 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVS----RIISKLKQ 196 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCChHHHHH----HHHHHHHH
Confidence 789999999999999 7985 77777776
No 321
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=53.89 E-value=18 Score=29.66 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESRA 511 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~rA 511 (532)
++.|+.+||+.+|+|+.++.+..++.
T Consensus 17 ~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 17 RPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 67999999999999999998887765
No 322
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=53.85 E-value=54 Score=27.31 Aligned_cols=64 Identities=11% Similarity=0.070 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 347 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 347 YA~~wIr~aI~~~ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
|..+.+.+.+.+.+........++...+..+.-+ ....+...+..+||+.+|++...+..++..
T Consensus 10 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l-------~~~~~~~~~~~ela~~l~~~~~tvs~~l~~ 73 (141)
T 3bro_A 10 RLLKIASNQMSTRFDIFAKKYDLTGTQMTIIDYL-------SRNKNKEVLQRDLESEFSIKSSTATVLLQR 73 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH-------HHTTTSCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-------HHCCCCCcCHHHHHHHHCCCcchHHHHHHH
Confidence 3444444445555444333334444333333322 222333578999999999999999887754
No 323
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=53.64 E-value=20 Score=29.09 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=22.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHH
Q 009567 487 PKSLSEVGNIFGLSKERVRQLESRA 511 (532)
Q Consensus 487 ~~Tl~EIAe~LgISrerVRqie~rA 511 (532)
+.|+.+||+.+|+|+.++.+..++.
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 8999999999999999998887776
No 324
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=53.61 E-value=15 Score=35.24 Aligned_cols=41 Identities=17% Similarity=0.054 Sum_probs=32.5
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 466 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 466 ~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
..|++-|+.....+.. ..++|.++||+.+|+|+.+|+++..
T Consensus 116 ~~L~~~E~a~~~~~l~---~~g~t~~~iA~~lG~s~~~V~~~l~ 156 (230)
T 1vz0_A 116 EDLSPVEEARGYQALL---EMGLTQEEVARRVGKARSTVANALR 156 (230)
T ss_dssp TTCCHHHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4688888776655543 2579999999999999999988764
No 325
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=53.50 E-value=89 Score=25.33 Aligned_cols=35 Identities=11% Similarity=0.013 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 383 AKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 383 a~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
+..-+........+.++||+.+|+++..+..+...
T Consensus 10 ~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 44 (108)
T 3oou_A 10 VLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQK 44 (108)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34444455566789999999999999999888753
No 326
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=53.46 E-value=56 Score=28.12 Aligned_cols=24 Identities=8% Similarity=0.137 Sum_probs=20.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhc
Q 009567 395 PDKEDLARRVGITVEKLERLIFIT 418 (532)
Q Consensus 395 Pt~eEIA~~lgis~e~v~~ll~~~ 418 (532)
-+..+||+.+|++...|..++...
T Consensus 49 ~s~~~iA~~lgis~~TV~rw~~~~ 72 (149)
T 1k78_A 49 VRPCDISRQLRVSHGCVSKILGRY 72 (149)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 478999999999999999988654
No 327
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=53.30 E-value=77 Score=27.81 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 346 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 346 TYA~~wIr~aI~~~ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
.|..+.+.+.+.+.+........++..-+..+.-+ ...+...+..+||+.+|++...+..++..
T Consensus 28 ~~~l~~~~~~~~~~~~~~l~~~glt~~q~~vL~~L--------~~~~~~~t~~eLa~~l~i~~~tvs~~l~~ 91 (166)
T 3deu_A 28 GSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNI--------HQLPPDQSQIQLAKAIGIEQPSLVRTLDQ 91 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHH--------HHSCSSEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH--------HHcCCCCCHHHHHHHHCCCHhhHHHHHHH
Confidence 34455555566666655444445554444333332 12233578999999999999999887754
No 328
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=52.92 E-value=11 Score=31.24 Aligned_cols=49 Identities=14% Similarity=0.096 Sum_probs=39.1
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLK 516 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~L-----gISrerVRqie~rALkKLR 516 (532)
.|+++|..+|.+.. ...|+..|.++|.+.+ ..+..+|+..+.+..+||.
T Consensus 31 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 84 (110)
T 1opc_A 31 PLTSGEFAVLKALV-SHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVE 84 (110)
T ss_dssp CCCHHHHHHHHHHH-HSTTCCEEHHHHHHHHCCSSSCTTSSCHHHHHHHHHHHHC
T ss_pred EcCHHHHHHHHHHH-HcCCceEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhh
Confidence 48999999887765 3556899999999998 5677888888777777774
No 329
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=52.81 E-value=42 Score=25.47 Aligned_cols=54 Identities=11% Similarity=0.058 Sum_probs=41.1
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 009567 467 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 520 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~ 520 (532)
.+++.+..+|...|..+.. ......+||..+|+|...|..+...-..|.|....
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 9 HFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 3567777888888864322 33456899999999999999999888888877543
No 330
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=52.64 E-value=11 Score=36.09 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=29.1
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 474 CIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 474 ~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
.|+.-.| ..|+.++..++|+.||||+..|| .||+.|..
T Consensus 40 ~I~~g~l--~pG~~L~e~~La~~lgVSRtpVR----EAL~~L~~ 77 (239)
T 2hs5_A 40 AIIDGTF--RPGARLSEPDICAALDVSRNTVR----EAFQILIE 77 (239)
T ss_dssp HHHHTSS--CTTCEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHcCCC--CCcCEeCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 3444433 34578899999999999999998 67777765
No 331
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=52.56 E-value=24 Score=35.97 Aligned_cols=36 Identities=8% Similarity=0.112 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 521 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~~ 521 (532)
...|.+|||+..|||..|||+..+.-+..+...+..
T Consensus 291 ~~~t~~eIa~v~~Vse~TIr~rykel~~~~~~l~~~ 326 (345)
T 4bbr_M 291 IPITAAKVGQTLQVTEGTIKSGYKILYEHRDKLVDP 326 (345)
T ss_dssp ------------------------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCH
Confidence 789999999999999999998888777776665543
No 332
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=52.19 E-value=13 Score=35.52 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=23.4
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 485 GKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 485 ~e~~-Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
|+.+ |..|+|+.||||+.+|| +|+..|..
T Consensus 30 g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 59 (236)
T 3edp_A 30 GMLMPNETALQEIYSSSRTTIR----RAVDLLVE 59 (236)
T ss_dssp CC--CCHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 4667 99999999999999997 67777765
No 333
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=52.01 E-value=15 Score=27.70 Aligned_cols=35 Identities=9% Similarity=0.124 Sum_probs=23.5
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 472 ERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 472 ER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
|+++|..-+-- .+.+..+.|+.||||+.++...+.
T Consensus 20 E~~~i~~aL~~---~~gn~~~aA~~LGisr~tL~rklk 54 (63)
T 3e7l_A 20 EKIFIEEKLRE---YDYDLKRTAEEIGIDLSNLYRKIK 54 (63)
T ss_dssp HHHHHHHHHHH---TTTCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHH---hCCCHHHHHHHHCcCHHHHHHHHH
Confidence 45555443321 234788999999999999876543
No 334
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=51.88 E-value=88 Score=26.36 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 382 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 382 ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
++..-+.......++.++||+.+|+++..+..+...
T Consensus 15 ~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~ 50 (129)
T 1bl0_A 15 SILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKK 50 (129)
T ss_dssp HHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 334444445566789999999999999999888753
No 335
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=51.82 E-value=1.1e+02 Score=26.56 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=21.8
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 391 GNHSPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 391 ~gr~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
.+...+..+||+.+|++...+..++..
T Consensus 43 ~~~~~~~~eLa~~l~~~~~tvs~~v~~ 69 (151)
T 4aik_A 43 LPPEQSQIQLAKAIGIEQPSLVRTLDQ 69 (151)
T ss_dssp SCTTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 344567789999999999999888764
No 336
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=51.75 E-value=19 Score=34.89 Aligned_cols=43 Identities=9% Similarity=-0.022 Sum_probs=33.9
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.|++.|-.||..-+. .+|.+.|..|||+.+++++.+|..++.+
T Consensus 155 gLt~~q~~vL~~L~~-~~~~~~t~~eLa~~l~i~~~tvt~~v~r 197 (250)
T 1p4x_A 155 TLSFVEFTILAIITS-QNKNIVLLKDLIETIHHKYPQTVRALNN 197 (250)
T ss_dssp SSCHHHHHHHHHHHT-TTTCCEEHHHHHHHSSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 699999999887663 2224699999999999999999755444
No 337
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=51.65 E-value=3.1 Score=38.46 Aligned_cols=34 Identities=12% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009567 473 RCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 511 (532)
Q Consensus 473 R~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rA 511 (532)
+.|+.++- .|+|..+||+.||||+.+|.++....
T Consensus 149 ~~i~~l~~-----~G~s~~~Ia~~l~vs~~Tvyr~l~~~ 182 (193)
T 3uj3_X 149 EQAGRLLA-----QGIPRKQVALIYDVALSTLYKKHPAK 182 (193)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 34555543 67999999999999999998776553
No 338
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=51.55 E-value=18 Score=34.34 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=32.8
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 466 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 466 ~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
..+++...+.|...|.|. ++.+..+||+.||+|+.+|+ .++++|++
T Consensus 11 ~~ls~s~EdYLk~I~~L~--~~V~~~~LA~~LgvS~~SV~----~~lkkL~e 56 (200)
T 2p8t_A 11 AYPEYTVEDVLAVIFLLK--EPLGRKQISERLELGEGSVR----TLLRKLSH 56 (200)
T ss_dssp ---CCCHHHHHHHHHHTT--SCBCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHc--CCccHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 345555556666666552 67899999999999999997 56677766
No 339
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=51.36 E-value=12 Score=35.12 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=28.8
Q ss_pred HHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 475 IVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 475 VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
|+.-.| ..|+.++..++|+.||||+..|| .|+++|..
T Consensus 29 I~~g~l--~pG~~L~E~~La~~lgVSRtpVR----EAl~~L~~ 65 (222)
T 3ihu_A 29 LELGTF--VPGQRLVETDLVAHFGVGRNSVR----EALQRLAA 65 (222)
T ss_dssp HHHTSS--CTTCEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHhCCC--CCCCccCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 444443 34588899999999999999997 67877765
No 340
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=51.29 E-value=17 Score=37.03 Aligned_cols=42 Identities=29% Similarity=0.290 Sum_probs=33.2
Q ss_pred CCHHHHHHHHH--HhcccCCCCCCHHHHHHHh--CCCHHHHHHHHH
Q 009567 468 LNPKERCIVRL--RFGIEDGKPKSLSEVGNIF--GLSKERVRQLES 509 (532)
Q Consensus 468 L~~rER~VL~L--RyGL~~~e~~Tl~EIAe~L--gISrerVRqie~ 509 (532)
|++|++.||.. ...+..+++-+.+++++.+ |||..|||+-..
T Consensus 15 l~eR~~~IL~~i~~~yl~~~~pV~s~~La~~~~l~VS~aTIRrDL~ 60 (338)
T 1stz_A 15 LNDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMK 60 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccHHHHHHHhCCCCCHHHHHHHHH
Confidence 88999999983 1123445899999999999 999999996543
No 341
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=51.27 E-value=42 Score=28.11 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 520 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~ 520 (532)
-++|+.+||+.||-...+|.. |.+|+.+.+.
T Consensus 49 t~~Sl~~IG~~fgRDHsTV~h----a~~ki~~~~~ 79 (101)
T 3pvv_A 49 TDLSLPKIGQAFGRDHTTVMY----AQRKILSEMA 79 (101)
T ss_dssp CCCCHHHHHHHTTCCHHHHHH----HHHHHHHHHH
T ss_pred hCCCHHHHHHHHCCCHHHHHH----HHHHHHHHHH
Confidence 589999999999999999964 5555555443
No 342
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=51.13 E-value=15 Score=35.29 Aligned_cols=30 Identities=37% Similarity=0.459 Sum_probs=24.9
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 484 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 484 ~~e~~-Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
.|+.+ |..|+|+.||||+.+|| +|++.|..
T Consensus 30 ~g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 60 (243)
T 2wv0_A 30 PDMPLPSEREYAEQFGISRMTVR----QALSNLVN 60 (243)
T ss_dssp TTCBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CcCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 34666 89999999999999997 57777765
No 343
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=50.88 E-value=17 Score=33.99 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHH
Q 009567 470 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLE 508 (532)
Q Consensus 470 ~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie 508 (532)
+|++.|+.+-- ...-.|.+|+|+.||||..|||.=.
T Consensus 12 eR~~~i~~~l~---~~~~~~~~~la~~~~vs~~TiRrDl 47 (190)
T 4a0z_A 12 KRREAIRQQID---SNPFITDHELSDLFQVSIQTIRLDR 47 (190)
T ss_dssp HHHHHHHHHHH---HCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHH---HCCCEeHHHHHHHHCCCHHHHHHHH
Confidence 44555555533 2345799999999999999998643
No 344
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=50.55 E-value=21 Score=34.35 Aligned_cols=32 Identities=31% Similarity=0.466 Sum_probs=25.8
Q ss_pred ccCCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 482 IEDGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 482 L~~~e~~-Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
+..|+.+ |..|+|+.||||+.+|| +|+..|..
T Consensus 30 ~~~g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 62 (248)
T 3f8m_A 30 MRIGDPFPAEREIAEQFEVARETVR----QALRELLI 62 (248)
T ss_dssp CCTTCBCCCHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3344677 99999999999999997 67777755
No 345
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=50.29 E-value=15 Score=35.16 Aligned_cols=30 Identities=27% Similarity=0.352 Sum_probs=25.1
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 484 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 484 ~~e~~-Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
.|+.+ |..|+|+.||||+.+|| +|+..|..
T Consensus 25 ~g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 55 (239)
T 3bwg_A 25 QGDKLPVLETLMAQFEVSKSTIT----KSLELLEQ 55 (239)
T ss_dssp TTCBCCCHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred CCCCCcCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 34667 99999999999999997 57777765
No 346
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=50.09 E-value=47 Score=25.27 Aligned_cols=53 Identities=8% Similarity=0.093 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 009567 468 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 520 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~ 520 (532)
+++.+..+|...|..+.. ......+||..+|+|...|..+...-..|.|....
T Consensus 9 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 9 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 566677777777754322 34457899999999999999999888888877544
No 347
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=49.82 E-value=31 Score=26.41 Aligned_cols=54 Identities=17% Similarity=0.102 Sum_probs=39.3
Q ss_pred cCCHHHHHHHHHHhcccCCCC----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 009567 467 LLNPKERCIVRLRFGIEDGKP----KSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 520 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~----~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~ 520 (532)
.+|+.+..+|.-.|.-.-..+ ..-.+||..+|+|...|.........|++..+.
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 478888888887775111122 236789999999999999999999999887543
No 348
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=49.47 E-value=3.5 Score=36.85 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..|||+.+|||+.+|++++..
T Consensus 13 ~gltq~elA~~lgis~~~vs~~e~G 37 (158)
T 2p5t_A 13 HDLTQLEFARIVGISRNSLSRYENG 37 (158)
T ss_dssp -------------------------
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 6899999999999999999999764
No 349
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=49.10 E-value=9.9 Score=30.13 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=22.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 487 PKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 487 ~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.+|..|+|+.+|||..++|.++..
T Consensus 5 ~~~i~e~A~~~gvs~~tlR~ye~~ 28 (81)
T 2jml_A 5 TLRIRTIARMTGIREATLRAWERR 28 (81)
T ss_dssp CEEHHHHHHTTSTTHHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHHh
Confidence 479999999999999999999886
No 350
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.06 E-value=29 Score=27.19 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 009567 468 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 520 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~ 520 (532)
+++.+..+|...|-.+.. ......+||..+|++...|..+...-..|.|....
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 14 FKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 456666677666653211 22346789999999999999999998888887654
No 351
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=49.06 E-value=44 Score=26.64 Aligned_cols=55 Identities=13% Similarity=-0.028 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHhcccCC----CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcC
Q 009567 468 LNPKERCIVRLRFGIEDG----KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGK 522 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~----e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~~~ 522 (532)
++..+..+|.-.|.-.-. ....-.+||..+|+|...|..+...+..|.+..+...
T Consensus 14 ~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 14 LPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 566677777665541100 1225578999999999999999999999998876543
No 352
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=49.05 E-value=7.9 Score=34.59 Aligned_cols=25 Identities=8% Similarity=0.243 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.+.|.++||..+|+|+++|.++.++
T Consensus 167 ~~~t~~~iA~~lG~sretlsR~l~~ 191 (194)
T 3dn7_A 167 QRVPQYLLASYLGFTPEYLSEIRKK 191 (194)
T ss_dssp -------------------------
T ss_pred HHCCHHHHHHHhCCCHHHHHHHHHh
Confidence 5789999999999999999766543
No 353
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=49.05 E-value=9.2 Score=34.09 Aligned_cols=39 Identities=5% Similarity=0.107 Sum_probs=27.7
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLE 508 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie 508 (532)
.+++.+++++..... +.+.+..+||+.+|+|+.+|++.+
T Consensus 139 ~~~~~~~~~~~~~~~---~~~~~~~~ia~~l~is~~tv~~~l 177 (184)
T 3rqi_A 139 SVDRLEWEHIQRVLA---ENNNNISATARALNMHRRTLQRKL 177 (184)
T ss_dssp C---CHHHHHHHHHH---HTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH---hccccHHHHHHHcCCcHHHHHHHH
Confidence 455667777765543 157899999999999999997654
No 354
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=48.78 E-value=27 Score=31.51 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=31.6
Q ss_pred cCCHHHHHHHHHHhccc---CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIE---DGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~---~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
.|+.+.+-.|+.-..|. ++.+.|.+|||+.+|+|+..|+++ +.+|++
T Consensus 21 ~lS~~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~ki----l~~L~~ 70 (159)
T 3lwf_A 21 KITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQL----IGPLRN 70 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHH----HHHHHH
T ss_pred eCchHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 45555555554433332 346799999999999999988754 455555
No 355
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=48.54 E-value=63 Score=27.15 Aligned_cols=62 Identities=5% Similarity=0.142 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 347 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 347 YA~~wIr~aI~~~ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
|..+.+.+.+.+.+........++..-+..+.-+.. . ...+..+||+.+|++...+..++..
T Consensus 13 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l~~-------~--~~~t~~eLa~~l~~~~~~vs~~l~~ 74 (143)
T 3oop_A 13 FDVNTTAKKMHLFLMRSIASYDVTPEQWSVLEGIEA-------N--EPISQKEIALWTKKDTPTVNRIVDV 74 (143)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSSCHHHHHHHHHHHH-------H--SSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHH-------c--CCcCHHHHHHHHCCCHhhHHHHHHH
Confidence 444455555555655554444455544444443321 1 2568999999999999999887754
No 356
>1hkq_A REPA, replication protein; DNA binding protein, winged-helix, PPS10 plasmid, replication initiator dimer.; 2.75A {Pseudomonas syringae PV} SCOP: a.4.5.10
Probab=48.27 E-value=39 Score=29.27 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=46.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcccCCC---------CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 460 HVRNLLTLLNPKERCIVRLRFGIEDGK---------PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 460 ~L~~~L~~L~~rER~VL~LRyGL~~~e---------~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
.|-.+--.|+..|+.||.+-...-+.. ..+..|+++.+|++..+.-+.++.|.++|.+
T Consensus 11 ~Li~A~y~Ltl~E~rll~~~is~i~~~~~~~~~~~~~i~~~e~~~~~~~~~~~aY~~lk~a~~~L~~ 77 (132)
T 1hkq_A 11 KLIESSHTLTLNEKRLVLCAASLIDSRKPLPKDGYLTIRADTFAEVFGIDVKHAYAALDDAATKLFN 77 (132)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHTCCTTSCCCGGGEEEEEHHHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred hHhhccCCCCHHHHHHHHHHHHhCCcCCCCCCCCEEEEEHHHHHHHHCCCcchHHHHHHHHHHHHhh
Confidence 455667789999999998866543222 2568999999999999999999999999865
No 357
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=48.17 E-value=28 Score=26.66 Aligned_cols=53 Identities=11% Similarity=0.176 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 009567 468 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 520 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~ 520 (532)
+++.+..+|...|..+.. ......+||..+|++...|..+...-..|.|..-.
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 14 FSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 566666777777753221 22345789999999999999999988888877543
No 358
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=48.11 E-value=8.1 Score=32.48 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=22.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Q 009567 488 KSLSEVGNIFGLSKERVRQLESRAL 512 (532)
Q Consensus 488 ~Tl~EIAe~LgISrerVRqie~rAL 512 (532)
+|..|+|+.+|||..++|.++..++
T Consensus 3 ~~i~e~A~~~gvs~~tLR~ye~~Gl 27 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHYDNIEL 27 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHHHHTTS
T ss_pred ccHHHHHHHHCcCHHHHHHHHHCCC
Confidence 6899999999999999999987643
No 359
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=48.02 E-value=1e+02 Score=26.40 Aligned_cols=24 Identities=8% Similarity=0.196 Sum_probs=21.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 394 SPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 394 ~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
..+..+||+.+|++...+..++..
T Consensus 63 ~~t~~ela~~l~is~~tvs~~l~~ 86 (162)
T 2fa5_A 63 GSSASEVSDRTAMDKVAVSRAVAR 86 (162)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 678999999999999999887754
No 360
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=47.93 E-value=28 Score=28.31 Aligned_cols=50 Identities=18% Similarity=0.121 Sum_probs=37.1
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~L-----gISrerVRqie~rALkKLR~ 517 (532)
.|+++|..+|.+.. ...|+..|-++|.+.+ ..+..+|+..+.+-.+||..
T Consensus 28 ~Lt~~e~~lL~~L~-~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~ 82 (102)
T 3zq7_A 28 HLTPIEFRLLAVLL-NNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQ 82 (102)
T ss_dssp CCCHHHHHHHHHHH-HTTTCEEEHHHHHHHHTSSSCSTTHHHHHHHHHHHHHHHCS
T ss_pred EcCHHHHHHHHHHH-HCCCeeECHHHHHHHhcCCCCCCccchHHHHHHHHHHHhhc
Confidence 48999999887755 3556889999999987 35667787777766666643
No 361
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system response regulator, effector domain, DNA-binding, phosphoprotein, plasmid; NMR {Klebsiella pneumoniae}
Probab=47.87 E-value=16 Score=30.60 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=39.3
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLK 516 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~L-----gISrerVRqie~rALkKLR 516 (532)
.|+++|..+|.+.. ...|+..|.++|.+.+ ..+..+|+..+.+.++||.
T Consensus 28 ~Lt~~E~~lL~~L~-~~~g~vvsre~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 81 (112)
T 2jzy_A 28 HLTGKEYVLLELLL-QRTGEVLPRSLISSLVWNMNFDSDTNVIDVAVRRLRSKID 81 (112)
T ss_dssp CCCHHHHHHHHHHH-HTTTSCBCHHHHHHHHTCCCSSCSTTHHHHHHHHHHTTTT
T ss_pred ecCHHHHHHHHHHH-HCCCceEcHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhc
Confidence 48999999987755 3556899999999988 4677888888887777774
No 362
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=47.76 E-value=29 Score=25.35 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 468 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
+++.+..+|...|.-+.. ......+||..+|+|...|..+...-..|.|.
T Consensus 7 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 7 FTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 566777777777753321 12245789999999999999998887777654
No 363
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=47.68 E-value=17 Score=35.54 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=24.8
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 485 GKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 485 ~e~~-Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
|+.+ |..|+|+.||||+.+|| +|+..|..
T Consensus 50 g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 79 (272)
T 3eet_A 50 HTRLPSQARIREEYGVSDTVAL----EARKVLMA 79 (272)
T ss_dssp TSBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCCcCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 4667 99999999999999997 67777765
No 364
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=47.61 E-value=20 Score=27.73 Aligned_cols=55 Identities=15% Similarity=0.016 Sum_probs=39.6
Q ss_pred cCCHHHHHHHHHHhcc---cCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc
Q 009567 467 LLNPKERCIVRLRFGI---EDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 521 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL---~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~~ 521 (532)
.+++.+..+|.-.|.- +.. ....-.+||..+|+|...|..+......|.+..+..
T Consensus 13 ~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 13 VLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 3566777777776631 100 122456889999999999999999999999886644
No 365
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=47.37 E-value=12 Score=29.19 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=20.8
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q 009567 489 SLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 489 Tl~EIAe~LgISrerVRqie~r 510 (532)
|+.++|+.+|||+.+|+++++.
T Consensus 29 sq~~lA~~~gis~~~is~~E~g 50 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETG 50 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHcC
Confidence 9999999999999999999874
No 366
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=47.31 E-value=6.5 Score=33.40 Aligned_cols=35 Identities=26% Similarity=0.246 Sum_probs=29.0
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 009567 474 CIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 512 (532)
Q Consensus 474 ~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rAL 512 (532)
.||....+ ..+|+.|.++.+|||.+.|..++....
T Consensus 41 ~VV~~v~~----g~lS~~EAa~ry~Is~~ei~~W~r~y~ 75 (101)
T 2oa4_A 41 AVVRGVIY----GLITLAEAKQTYGLSDEEFNSWVSALA 75 (101)
T ss_dssp HHHHHHHH----TTCCHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHh----CCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 46665555 689999999999999999999987753
No 367
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=47.24 E-value=23 Score=31.14 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
.++++.||++.+|||+.+|.++++
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~ 59 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLR 59 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Confidence 479999999999999999975443
No 368
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=47.23 E-value=31 Score=25.48 Aligned_cols=50 Identities=10% Similarity=0.062 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 468 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
+++.+..+|...|.-+.. ......+||..+|+|...|..+...-..|.|.
T Consensus 8 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 8 FTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 566777777777753321 12346789999999999999999887777664
No 369
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=47.19 E-value=24 Score=31.16 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=23.7
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 484 DGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 484 ~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
++...|.+|||+.+|+|+..|+++ +.+|++
T Consensus 27 ~~~~~~~~~iA~~~~i~~~~l~ki----l~~L~~ 56 (149)
T 1ylf_A 27 PSSLCTSDYMAESVNTNPVVIRKI----MSYLKQ 56 (149)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHH----HHHHHH
T ss_pred CCCCcCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 346799999999999999998754 455554
No 370
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.17 E-value=27 Score=26.74 Aligned_cols=52 Identities=10% Similarity=0.014 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 009567 468 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 519 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l 519 (532)
+++.+..+|...|-.+.. ......+||..+|++...|..+...-..|.|...
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 14 FTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 456666677666643211 2234678999999999999999988888887643
No 371
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=47.12 E-value=17 Score=34.72 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 485 GKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 485 ~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
+.++|+.|||+.+|+++.+|.++..
T Consensus 21 ~~~~~~~ela~~~gl~~stv~r~l~ 45 (249)
T 1mkm_A 21 PGDVSVSEIAEKFNMSVSNAYKYMV 45 (249)
T ss_dssp SSCBCHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3579999999999999999976544
No 372
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=46.99 E-value=33 Score=26.39 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=42.0
Q ss_pred cCCHHHHHHHHHHh---cccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCc
Q 009567 467 LLNPKERCIVRLRF---GIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKA 523 (532)
Q Consensus 467 ~L~~rER~VL~LRy---GL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~~~~ 523 (532)
.+++.+..+|.-.| .-+.. ....-.+||..+|+|...|..+......|.|.......
T Consensus 7 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~~ 67 (73)
T 1puf_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQ 67 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTTT
T ss_pred cCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccccc
Confidence 46777888888877 31111 12245688999999999999999999999988665443
No 373
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=46.93 E-value=16 Score=34.97 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 485 GKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 485 ~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
+.++|+.|||+.+|+++.+|..+..
T Consensus 19 ~~~~s~~ela~~~gl~~stv~r~l~ 43 (241)
T 2xrn_A 19 PHGLSLAAIAQLVGLPRSTVQRIIN 43 (241)
T ss_dssp TTCEEHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3579999999999999999975543
No 374
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=46.86 E-value=12 Score=30.60 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=22.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 487 PKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 487 ~~Tl~EIAe~LgISrerVRqie~r 510 (532)
+++..++|+..|||+.++..|++.
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIenG 55 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIVNS 55 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHTC
T ss_pred hcCHHHHHHHcCCCHHHHHHHHcC
Confidence 689999999999999999998864
No 375
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=46.68 E-value=1.7e+02 Score=26.49 Aligned_cols=36 Identities=39% Similarity=0.570 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhhCCCCcHHHHHHHccCCHHHHHHH
Q 009567 250 RLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSE 285 (532)
Q Consensus 250 ~le~~~~~l~~~~g~~pt~~ewA~aag~~~~~L~~~ 285 (532)
++.+....+....|+.|+..+.|...|++.+.+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 135 (239)
T 1rp3_A 100 RIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKT 135 (239)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHH
Confidence 344566677788899999999999999987766443
No 376
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=46.60 E-value=1.3e+02 Score=25.06 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 348 AYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 348 A~~wIr~aI~~~ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
..+.+...+.+.+........++..-+..+..+ ... +...+..+||+.+|++...+..++..
T Consensus 14 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l-------~~~-~~~~t~~~la~~l~~s~~~vs~~l~~ 75 (146)
T 2fbh_A 14 LLAQTSRAWRAELDRRLSHLGLSQARWLVLLHL-------ARH-RDSPTQRELAQSVGVEGPTLARLLDG 75 (146)
T ss_dssp HHHHHHHHHHHHHHHHTGGGCCTTTHHHHHHHH-------HHC-SSCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH-------HHc-CCCCCHHHHHHHhCCChhhHHHHHHH
Confidence 334444445555544333334444444333332 112 23578999999999999999888764
No 377
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=46.21 E-value=11 Score=34.57 Aligned_cols=28 Identities=25% Similarity=0.560 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
-+.|.++||..+|+|+++|. |++++|++
T Consensus 163 ~~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 190 (213)
T 1o5l_A 163 LPVTLEELSRLFGCARPALS----RVFQELER 190 (213)
T ss_dssp --------------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 36899999999999999995 66666665
No 378
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=46.19 E-value=25 Score=33.85 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 485 GKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 485 ~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
+.++|+.|||+.+|+++.+|..+.+
T Consensus 27 ~~~~~~~eia~~~gl~~stv~r~l~ 51 (257)
T 2g7u_A 27 RPNPTLAELATEAGLSRPAVRRILL 51 (257)
T ss_dssp CSSCBHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4689999999999999999975543
No 379
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=46.12 E-value=14 Score=30.64 Aligned_cols=43 Identities=12% Similarity=0.066 Sum_probs=28.0
Q ss_pred HHHhcCCHHHHH-HHHHHhcccCCCCCCHHHHHHHh-CCCHHHHHHHHH
Q 009567 463 NLLTLLNPKERC-IVRLRFGIEDGKPKSLSEVGNIF-GLSKERVRQLES 509 (532)
Q Consensus 463 ~~L~~L~~rER~-VL~LRyGL~~~e~~Tl~EIAe~L-gISrerVRqie~ 509 (532)
.++..+..+-+. ||...+ + .++++.||++.+ |+|+.+|.++++
T Consensus 17 ~~l~~l~~~~~~~IL~~L~---~-~~~~~~eL~~~l~gis~~~ls~~L~ 61 (107)
T 2fsw_A 17 KSMQIFAGKWTLLIIFQIN---R-RIIRYGELKRAIPGISEKMLIDELK 61 (107)
T ss_dssp HHHHHHTSSSHHHHHHHHT---T-SCEEHHHHHHHSTTCCHHHHHHHHH
T ss_pred HHHHHHcCccHHHHHHHHH---h-CCcCHHHHHHHcccCCHHHHHHHHH
Confidence 344555555443 433332 1 579999999999 599999975443
No 380
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=44.86 E-value=4.6 Score=37.39 Aligned_cols=28 Identities=7% Similarity=0.044 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESRALY 513 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~rALk 513 (532)
.|+|..+||+.||+|+.||.+++.+.-.
T Consensus 157 ~G~s~~~Ia~~l~vs~~T~yr~l~~~~~ 184 (193)
T 3plo_X 157 QGIPRKQVALIYDVALSTLYKKHPAKRA 184 (193)
T ss_dssp ----------------------------
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHhhhHH
Confidence 6799999999999999999877655433
No 381
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=44.59 E-value=25 Score=30.92 Aligned_cols=29 Identities=24% Similarity=0.158 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 485 GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 485 ~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
+.+.|.+|||+.+|+|+..|+++ +.+|++
T Consensus 26 ~~~~s~~~IA~~~~i~~~~l~ki----l~~L~~ 54 (143)
T 3t8r_A 26 QGCISLKSIAEENNLSDLYLEQL----VGPLRN 54 (143)
T ss_dssp SCCEEHHHHHHHTTCCHHHHHHH----HHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 35789999999999999988755 455555
No 382
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=44.51 E-value=29 Score=25.72 Aligned_cols=51 Identities=8% Similarity=0.187 Sum_probs=36.6
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
.+++.+..+|...|..+.. ......+||..+|+|...|..+...-..|.|.
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 9 AFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 3567777788777753321 12345789999999999999998777776653
No 383
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=44.47 E-value=39 Score=26.35 Aligned_cols=51 Identities=12% Similarity=0.206 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 009567 469 NPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 519 (532)
Q Consensus 469 ~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l 519 (532)
+..+..+|.-.|..... .+....+||..+|+|+..|+.+...-..|+|...
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 34455666666653321 3456789999999999999999999998888643
No 384
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=44.45 E-value=36 Score=32.78 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|..+||+.+|||.++|+++++.
T Consensus 43 ~gltQ~evA~~tGISqS~ISq~e~~ 67 (221)
T 2h8r_A 43 HNIPQREVVDVTGLNQSHLSQHLNK 67 (221)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHhC
Confidence 4689999999999999999999973
No 385
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=44.08 E-value=33 Score=27.39 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=41.5
Q ss_pred cCCHHHHHHHHHHhcccCCCC----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcC
Q 009567 467 LLNPKERCIVRLRFGIEDGKP----KSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGK 522 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~----~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~~~ 522 (532)
.+++.+..+|.-.|.-....+ ..-.+||..+|++...|..+......|.|......
T Consensus 7 ~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 467788888888873111112 24568999999999999999999999998865443
No 386
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=44.07 E-value=71 Score=27.63 Aligned_cols=63 Identities=16% Similarity=0.067 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 346 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 346 TYA~~wIr~aI~~~ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
.|...++.+.+.+.+.....-..++..-+..+.-+. . .+ ..+..+||+.+|++...+..++..
T Consensus 28 ~~~l~~~~~~~~~~~~~~~~~~glt~~q~~vL~~l~-------~-~~-~~t~~eLa~~l~~~~~~vs~~l~~ 90 (161)
T 3e6m_A 28 PYLLTRITHIWSSELNQALASEKLPTPKLRLLSSLS-------A-YG-ELTVGQLATLGVMEQSTTSRTVDQ 90 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH-------H-HS-EEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH-------h-CC-CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 344444444555544443333344444444444332 1 22 578999999999999999887754
No 387
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=44.01 E-value=16 Score=29.61 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 470 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 470 ~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
.-|+.+|..-+-- .+.+..+.|+.||||+.++...++
T Consensus 50 ~~E~~~i~~aL~~---~~gn~~~aA~~LGIsr~tL~rklk 86 (91)
T 1ntc_A 50 ELERTLLTTALRH---TQGHKQEAARLLGWGAATLTAKLK 86 (91)
T ss_dssp HHHHHHHHHHHHH---TTTCTTHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---hCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4466666554432 233667999999999999975543
No 388
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=43.66 E-value=40 Score=25.17 Aligned_cols=51 Identities=8% Similarity=0.075 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 468 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
+++.+..+|...|..+.. ......+||..+|+|...|..+...-..|.|..
T Consensus 10 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 10 YTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 566677777777753321 223457899999999999999998887777653
No 389
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=43.61 E-value=1.1e+02 Score=26.69 Aligned_cols=25 Identities=8% Similarity=0.107 Sum_probs=21.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhcC
Q 009567 395 PDKEDLARRVGITVEKLERLIFITR 419 (532)
Q Consensus 395 Pt~eEIA~~lgis~e~v~~ll~~~~ 419 (532)
-+..+||+.+|++...|..++....
T Consensus 42 ~s~~~IA~~lgis~~TV~rwl~r~~ 66 (159)
T 2k27_A 42 VRPCDISRQLRVSHGCVSKILGRYY 66 (159)
T ss_dssp CCHHHHHHHHTCCSHHHHHHHCCSS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4788999999999999999987543
No 390
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=43.46 E-value=40 Score=31.68 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
.++|..++|+.+|||..+|++++.
T Consensus 42 ~gitQ~~lA~~~GiSqs~ISr~l~ 65 (194)
T 1ic8_A 42 HNIPQREVVDTTGLNQSHLSQHLN 65 (194)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCChHHHHHHHh
Confidence 689999999999999999999975
No 391
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=43.42 E-value=29 Score=27.86 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=20.6
Q ss_pred CCCHHHHHHHhCCCHH-HHHHHHHh
Q 009567 394 SPDKEDLARRVGITVE-KLERLIFI 417 (532)
Q Consensus 394 ~Pt~eEIA~~lgis~e-~v~~ll~~ 417 (532)
..+..+||+.|||+.. .|+..+..
T Consensus 25 ~~ta~eiA~~Lgit~~~aVr~hL~~ 49 (79)
T 1xmk_A 25 DSSALNLAKNIGLTKARDINAVLID 49 (79)
T ss_dssp CEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred CcCHHHHHHHcCCCcHHHHHHHHHH
Confidence 5678999999999999 99887754
No 392
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=43.41 E-value=42 Score=26.38 Aligned_cols=53 Identities=8% Similarity=0.023 Sum_probs=38.6
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 009567 467 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 519 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l 519 (532)
.+++.+..+|...|-.+.. ......+||..+|++...|+.+...-..|.|...
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (80)
T 2cue_A 13 SFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 66 (80)
T ss_dssp CSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHh
Confidence 3567777888888753221 1224578999999999999999988777777654
No 393
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=43.19 E-value=52 Score=24.95 Aligned_cols=54 Identities=11% Similarity=0.058 Sum_probs=39.6
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 009567 467 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 520 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~ 520 (532)
.+++.+..+|...|..+.. ......+||..+|+|...|..+...-..|.|....
T Consensus 8 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 8 TFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 3567777888888853321 12245789999999999999999888888776543
No 394
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=43.11 E-value=87 Score=22.88 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=37.2
Q ss_pred cCCHHHHHHHHHHhcc---cCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGI---EDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL---~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
.+++.+..+|.-.|.- +.. ....-.+||..+|+|...|..+......+.|.
T Consensus 4 ~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 4 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp SCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 4677888888887763 111 11235688999999999999999888777653
No 395
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=43.10 E-value=54 Score=26.62 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESRA 511 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~rA 511 (532)
++.|+.+||+.+|+|+.++..+.++.
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 58999999999999999998877765
No 396
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=42.76 E-value=25 Score=33.98 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 485 GKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 485 ~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
+.++|+.|||+.+|+++.+|.++..
T Consensus 36 ~~~~~~~eia~~~gl~kstv~r~l~ 60 (260)
T 2o0y_A 36 HPTRSLKELVEGTKLPKTTVVRLVA 60 (260)
T ss_dssp BSSBCHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 3689999999999999999975543
No 397
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=42.61 E-value=47 Score=27.17 Aligned_cols=54 Identities=9% Similarity=0.079 Sum_probs=40.8
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 009567 467 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 520 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~ 520 (532)
.+++.+..+|...|.-+.. ......+||..+|++...|+.+...-..|.|....
T Consensus 40 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 40 NFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 4788888888888853221 12245789999999999999999888888877644
No 398
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=42.48 E-value=37 Score=25.08 Aligned_cols=51 Identities=10% Similarity=0.059 Sum_probs=36.6
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
.+++.+..+|...|..+.. ......+||..+|+|...|..+...-..|.|.
T Consensus 5 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk 56 (60)
T 3a02_A 5 TFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRK 56 (60)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC-
T ss_pred ccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHh
Confidence 3567777788777753221 12236789999999999999998887777665
No 399
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=42.44 E-value=53 Score=27.34 Aligned_cols=44 Identities=18% Similarity=0.195 Sum_probs=30.3
Q ss_pred hcCCHHHHHHHH-HHhcc--cCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 466 TLLNPKERCIVR-LRFGI--EDGKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 466 ~~L~~rER~VL~-LRyGL--~~~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
..|++.+--|+. |...- -.|.++++.+||+.+++++.+++..+.
T Consensus 12 ~gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~ 58 (96)
T 2obp_A 12 DGIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLT 58 (96)
T ss_dssp -CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHH
Confidence 357777777766 33221 123568999999999999999975544
No 400
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=42.38 E-value=41 Score=26.24 Aligned_cols=54 Identities=11% Similarity=0.167 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc
Q 009567 468 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 521 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~~ 521 (532)
+++.+..+|...|..+.. ......+||..+|++...|..+...-..|.|.....
T Consensus 16 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 16 FTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcc
Confidence 456666677666653221 122457899999999999999998888888775544
No 401
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=42.37 E-value=28 Score=33.72 Aligned_cols=44 Identities=14% Similarity=0.198 Sum_probs=32.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.|++.|+.+|..-.-..+|.+.+..++|+.||+++.++.....+
T Consensus 244 ~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~ 287 (324)
T 1hqc_A 244 GLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEP 287 (324)
T ss_dssp CCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhH
Confidence 46777777776543222346789999999999999999875554
No 402
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=42.05 E-value=33 Score=28.49 Aligned_cols=26 Identities=19% Similarity=0.109 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESRA 511 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~rA 511 (532)
.+.|+.|+|..+|||.+.|..+...-
T Consensus 48 g~~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 48 GLITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp TSSCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 57899999999999999999988764
No 403
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=42.04 E-value=25 Score=32.93 Aligned_cols=46 Identities=30% Similarity=0.397 Sum_probs=31.6
Q ss_pred HHhcC-CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 464 LLTLL-NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 464 ~L~~L-~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
++..| ++....||.+-.. .++|..|||+.+|+|..+|.++ |++|.+
T Consensus 8 ilkaL~~~~rl~IL~~L~~----~~~s~~eLa~~l~is~stvs~h----Lk~Le~ 54 (202)
T 2p4w_A 8 LLDVLGNETRRRILFLLTK----RPYFVSELSRELGVGQKAVLEH----LRILEE 54 (202)
T ss_dssp HHHHHHSHHHHHHHHHHHH----SCEEHHHHHHHHTCCHHHHHHH----HHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 34444 3555566655432 5899999999999999999754 455544
No 404
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=41.94 E-value=45 Score=25.14 Aligned_cols=53 Identities=13% Similarity=0.136 Sum_probs=39.1
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 009567 467 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 519 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l 519 (532)
.+++.+..+|...|.-+.. ......+||..+|+|...|..+...-..|.|...
T Consensus 7 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 7 AFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSC
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhc
Confidence 3577788888888853221 1224578999999999999999988888877543
No 405
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=41.86 E-value=68 Score=28.02 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=36.0
Q ss_pred hcCCHHHHHHHHHHhcccCCC---CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 466 TLLNPKERCIVRLRFGIEDGK---PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 466 ~~L~~rER~VL~LRyGL~~~e---~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
..++++++.|....-+--|.. ..++.||++.+|++.+.|. ++++.|+.
T Consensus 15 ~~~~~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve----~vL~~iQ~ 65 (130)
T 2k9m_A 15 LELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELE----KVRQKVLR 65 (130)
T ss_dssp HHCCSHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHHHHH----HHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHH----HHHHHHhc
Confidence 468999998887655543334 4589999999999999885 56666665
No 406
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=41.60 E-value=87 Score=25.92 Aligned_cols=63 Identities=10% Similarity=0.139 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 346 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 346 TYA~~wIr~aI~~~ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
.|..+.+.+.+.+.+.+..+...++..-+..+..+. . .+ ..+..+||+.+|++...+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l~-------~-~~-~~~~~~la~~l~~~~~tvs~~l~~ 71 (138)
T 1jgs_A 9 GRLIHMVNQKKDRLLNEYLSPLDITAAQFKVLCSIR-------C-AA-CITPVELKKVLSVDLGALTRMLDR 71 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHH-------H-HS-SBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH-------h-cC-CCCHHHHHHHHCCChHHHHHHHHH
Confidence 456666666676666665544555554444444331 1 22 468999999999999999888764
No 407
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=41.28 E-value=8.8 Score=32.08 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=33.0
Q ss_pred HHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC----CCHHHHHHHHHH
Q 009567 463 NLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG----LSKERVRQLESR 510 (532)
Q Consensus 463 ~~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~Lg----ISrerVRqie~r 510 (532)
+....|++.|..|+....- ..+.|..||++.++ ++..+|..++.+
T Consensus 28 ~~~~~LT~~e~~VL~~L~~---~~~~t~~eL~~~l~~~~~~s~sTVt~~L~r 76 (99)
T 2k4b_A 28 EVEFNVSNAELIVMRVIWS---LGEARVDEIYAQIPQELEWSLATVKTLLGR 76 (99)
T ss_dssp ---CCCCCSCSHHHHHHHH---HSCEEHHHHHHTCCGGGCCCHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHh---CCCCCHHHHHHHHhcccCCCHhhHHHHHHH
Confidence 3345799999999887664 24799999999997 578999755544
No 408
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=41.28 E-value=46 Score=30.53 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 382 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 416 (532)
Q Consensus 382 ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~ 416 (532)
.....+..+.|..||..|||+.+|++...+...+.
T Consensus 12 ~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~ 46 (196)
T 3k2z_A 12 LFIEEFIEKNGYPPSVREIARRFRITPRGALLHLI 46 (196)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHH
Confidence 33444556678899999999999999888877664
No 409
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=41.22 E-value=13 Score=32.69 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=22.1
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Q 009567 488 KSLSEVGNIFGLSKERVRQLESRAL 512 (532)
Q Consensus 488 ~Tl~EIAe~LgISrerVRqie~rAL 512 (532)
+|..|+|+.+|||..++|.++...+
T Consensus 1 ~~I~e~A~~~gvs~~tLR~ye~~Gl 25 (135)
T 1q06_A 1 MNISDVAKITGLTSKAIRFYEEKGL 25 (135)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 5889999999999999999987643
No 410
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=40.95 E-value=27 Score=30.22 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHh-CCCHHHHHHHHH
Q 009567 486 KPKSLSEVGNIF-GLSKERVRQLES 509 (532)
Q Consensus 486 e~~Tl~EIAe~L-gISrerVRqie~ 509 (532)
.++++.||++.+ |||..++.+++.
T Consensus 47 g~~~~~eLa~~l~gis~~tls~~L~ 71 (131)
T 1yyv_A 47 GTHRFSDLRRXMGGVSEXMLAQSLQ 71 (131)
T ss_dssp CCEEHHHHHHHSTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHH
Confidence 579999999999 799999975543
No 411
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=40.85 E-value=1.2e+02 Score=25.46 Aligned_cols=24 Identities=8% Similarity=0.090 Sum_probs=21.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 394 SPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 394 ~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
..+..+||+.+|++...+..++..
T Consensus 56 ~~t~~ela~~l~~~~~tvs~~l~~ 79 (150)
T 2rdp_A 56 DLTVGELSNKMYLACSTTTDLVDR 79 (150)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchhHHHHHHH
Confidence 578999999999999999888764
No 412
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=40.55 E-value=91 Score=25.76 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 347 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 347 YA~~wIr~aI~~~ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
|..+.+...+...+........++...+..+.-+. .+ ...+..+||+.+|++...+..++..
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l~--------~~-~~~~~~ela~~l~~s~~tvs~~l~~ 66 (138)
T 3bpv_A 5 GLLSIILRSHRVFIGRELGHLNLTDAQVACLLRIH--------RE-PGIKQDELATFFHVDKGTIARTLRR 66 (138)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGTCCHHHHHHHHHHH--------HS-TTCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH--------Hc-CCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 33444555555555544444445444333333321 12 2578999999999999999887754
No 413
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=40.53 E-value=23 Score=31.13 Aligned_cols=34 Identities=18% Similarity=0.074 Sum_probs=27.5
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHhCC-CHHHHHHHHHHH
Q 009567 474 CIVRLRFGIEDGKPKSLSEVGNIFGL-SKERVRQLESRA 511 (532)
Q Consensus 474 ~VL~LRyGL~~~e~~Tl~EIAe~LgI-SrerVRqie~rA 511 (532)
+-|..+.. .|+|+.+|+...|| |+.||..++.+-
T Consensus 19 e~I~~~i~----~G~sl~~i~~~~~~ps~~T~~~W~~~~ 53 (140)
T 4dyq_A 19 DDICSLLS----SGESLLKVCKRPGMPDKSTVFRWLAKH 53 (140)
T ss_dssp HHHHHHHH----TTCCHHHHHTSTTCCCHHHHHHHHHHC
T ss_pred HHHHHHHH----CCCcHHHHHhcCCCCCHHHHHHHHHcC
Confidence 33444555 78999999999999 899999998763
No 414
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=40.48 E-value=28 Score=25.72 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=34.6
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYR 514 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkK 514 (532)
.+++.+..+|...|.-+.. ......+||..+|+|...|..+......+
T Consensus 11 ~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k 59 (61)
T 1akh_A 11 SISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 59 (61)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 4677888888888763321 12345789999999999999988766554
No 415
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=40.44 E-value=24 Score=31.75 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=21.0
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q 009567 489 SLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 489 Tl~EIAe~LgISrerVRqie~r 510 (532)
|.+|+|+.+|+|+.+|+++++.
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g 43 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTR 43 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHS
T ss_pred CHHHHHHHhCcCHHHHHHHHhC
Confidence 9999999999999999999875
No 416
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=40.24 E-value=1.8e+02 Score=25.16 Aligned_cols=79 Identities=15% Similarity=-0.016 Sum_probs=55.7
Q ss_pred hhhC-CCCcHHHHHHHccCCHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCCHhhHHHHHHHHHHHh-hhhhC
Q 009567 260 SQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS-VEKFK 337 (532)
Q Consensus 260 ~~~g-~~pt~~ewA~aag~~~~~L~~~l~~g~~Are~LI~~nlrLV~sIAkrY~~~g~~~eDLiQEG~iGLikA-iekFD 337 (532)
...| ...|..+.|+.+|++...+-.-..+-+.-+..++..+..-+..........+.+..+.+...+..++.. +...+
T Consensus 28 ~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 107 (212)
T 3knw_A 28 LRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWTTETSARDKLMNYLQCWVKDPATEQS 107 (212)
T ss_dssp HHHCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHC------
T ss_pred HHcCCccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhcc
Confidence 3446 468999999999999999998888777778888877777666666666555677777777776666665 44444
Q ss_pred C
Q 009567 338 P 338 (532)
Q Consensus 338 p 338 (532)
+
T Consensus 108 ~ 108 (212)
T 3knw_A 108 W 108 (212)
T ss_dssp -
T ss_pred c
Confidence 3
No 417
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=40.06 E-value=34 Score=28.92 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.8
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHh
Q 009567 395 PDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 395 Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
.+..+||+.+|++...+..++..
T Consensus 52 ~t~~eLa~~l~~s~~tvs~~l~~ 74 (146)
T 3tgn_A 52 LTNSELARRLNVSQAAVTKAIKS 74 (146)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Confidence 88999999999999999888764
No 418
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=39.80 E-value=28 Score=29.16 Aligned_cols=25 Identities=8% Similarity=0.092 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
++.|+.+||+.+|+|+.++.+..++
T Consensus 22 ~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 22 HEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 6899999999999999988776543
No 419
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=39.76 E-value=73 Score=26.10 Aligned_cols=46 Identities=13% Similarity=0.023 Sum_probs=30.5
Q ss_pred HHHHHhhCCCCCHhhHHHHHHHHHHHhhhhhCCcCCCchhhHHHHH
Q 009567 306 HVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 351 (532)
Q Consensus 306 sIAkrY~~~g~~~eDLiQEG~iGLikAiekFDp~kG~rFSTYA~~w 351 (532)
.+........++++||.+...+.--.--..|.-.-|..|..|...+
T Consensus 14 ~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~ 59 (113)
T 3oio_A 14 SLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTVPSKYYLEL 59 (113)
T ss_dssp HHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHH
Confidence 3344444556889999888777666666666666677777766543
No 420
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=39.65 E-value=35 Score=32.99 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=21.9
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 484 DGKPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 484 ~~e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
.+.++|+.|||+.+|+++.+|.++..
T Consensus 33 ~~~~~~~~eia~~~gl~~stv~r~l~ 58 (265)
T 2ia2_A 33 RNQRRTLSDVARATDLTRATARRFLL 58 (265)
T ss_dssp SCSSEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34689999999999999999975544
No 421
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=39.37 E-value=49 Score=31.78 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~ 509 (532)
.+.|..+||+.+|+++++|+....
T Consensus 177 ~~~t~~~la~~~~l~~~~V~~~l~ 200 (232)
T 2qlz_A 177 GRATVEELSDRLNLKEREVREKIS 200 (232)
T ss_dssp SEEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHH
Confidence 689999999999999999986544
No 422
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=39.10 E-value=2.3e+02 Score=26.49 Aligned_cols=77 Identities=6% Similarity=-0.021 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCCcchhhhcccCCCCChhHHHHHHHHH
Q 009567 379 KVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMR 458 (532)
Q Consensus 379 ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~iSLD~~v~~d~~~~l~d~i~d~~~~~pee~~~~~~l~ 458 (532)
.+.++..-+.+......+.+++|+.+|+|+..+..+...... +|-+-+...-+
T Consensus 170 ~~~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~G~--------------------------t~~~~l~~~Rl- 222 (276)
T 3gbg_A 170 AMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGV--------------------------KFRELINSIRI- 222 (276)
T ss_dssp HHHHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHHTTTC--------------------------CHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHHHcCC--------------------------CHHHHHHHHHH-
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCC
Q 009567 459 QHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLS 500 (532)
Q Consensus 459 ~~L~~~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgIS 500 (532)
++-.-.|.. ..+|..|||..+|-+
T Consensus 223 -------------~~A~~lL~~-----~~~si~eIA~~~Gf~ 246 (276)
T 3gbg_A 223 -------------SYSISLMKT-----GEFKIKQIAYQSGFA 246 (276)
T ss_dssp -------------HHHHHHHHH-----TCCCHHHHHHHTTCS
T ss_pred -------------HHHHHHHhC-----CCCCHHHHHHHhCCC
No 423
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=39.05 E-value=48 Score=26.07 Aligned_cols=52 Identities=12% Similarity=0.074 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 009567 468 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 519 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l 519 (532)
+++.+..+|.-.|-.+.. ......+||..+|++...|..+...-..|.|...
T Consensus 25 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 25 FSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 566677777777653211 1223568999999999999999988888887754
No 424
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=39.02 E-value=39 Score=26.25 Aligned_cols=24 Identities=8% Similarity=0.223 Sum_probs=21.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 394 SPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 394 ~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
.++..|||+.+|++...+...+..
T Consensus 14 ~~s~~eLa~~lgvs~~tv~r~L~~ 37 (81)
T 2htj_A 14 GGKTAEIAEALAVTDYQARYYLLL 37 (81)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 589999999999999999887754
No 425
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=38.85 E-value=42 Score=24.24 Aligned_cols=48 Identities=10% Similarity=0.174 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 009567 468 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRL 515 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKL 515 (532)
+++.+..+|...|-.+.. ......+||..+|++...|+.+...-..|.
T Consensus 9 ~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 57 (58)
T 3rkq_A 9 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKS 57 (58)
T ss_dssp CCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccC
Confidence 567777888887753321 123456889999999999999887665543
No 426
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=38.82 E-value=15 Score=32.77 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESRAL 512 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~rAL 512 (532)
..+|..|+|+.+|||..++|.++...+
T Consensus 3 ~~~tI~evA~~~Gvs~~tLR~ye~~GL 29 (146)
T 3hh0_A 3 LAWLISEFASVGDVTVRALRYYDKINL 29 (146)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHTTS
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHCCC
Confidence 357999999999999999999987643
No 427
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=38.79 E-value=43 Score=26.70 Aligned_cols=24 Identities=0% Similarity=0.117 Sum_probs=21.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 394 SPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 394 ~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
..+..|||+.+|+|+..|+..+..
T Consensus 16 ~vsv~eLa~~l~VS~~TIRrdL~~ 39 (78)
T 1xn7_A 16 RMEAAQISQTLNTPQPMINAMLQQ 39 (78)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHH
Confidence 578999999999999999987754
No 428
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=38.69 E-value=47 Score=25.21 Aligned_cols=53 Identities=11% Similarity=0.182 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 009567 468 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 520 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~ 520 (532)
+++.+..+|...|..+.. ......+||..+|+|...|..+...-..|.|....
T Consensus 9 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 9 FSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred cCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 566677777777753321 22345789999999999999999888888876543
No 429
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=38.48 E-value=24 Score=28.43 Aligned_cols=21 Identities=10% Similarity=0.355 Sum_probs=17.7
Q ss_pred CCHHHHHHHhCCCHHHHHHHH
Q 009567 488 KSLSEVGNIFGLSKERVRQLE 508 (532)
Q Consensus 488 ~Tl~EIAe~LgISrerVRqie 508 (532)
.+..+.|+.||||+.++...+
T Consensus 55 GN~s~AA~~LGISR~TLyrKL 75 (81)
T 1umq_A 55 RNVSETARRLNMHRRTLQRIL 75 (81)
T ss_dssp SCHHHHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 468899999999999987554
No 430
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=38.23 E-value=26 Score=27.06 Aligned_cols=20 Identities=10% Similarity=0.154 Sum_probs=19.1
Q ss_pred CHHHHHHHhCCCHHHHHHHH
Q 009567 489 SLSEVGNIFGLSKERVRQLE 508 (532)
Q Consensus 489 Tl~EIAe~LgISrerVRqie 508 (532)
|+.+.|+.||||+.+|++.+
T Consensus 15 s~t~aA~~L~vtQ~AVS~~i 34 (66)
T 2ovg_A 15 GQTKTAKDLGVYPSSINQAI 34 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999886
No 431
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=38.13 E-value=95 Score=25.66 Aligned_cols=26 Identities=12% Similarity=0.244 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhc
Q 009567 393 HSPDKEDLARRVGITVEKLERLIFIT 418 (532)
Q Consensus 393 r~Pt~eEIA~~lgis~e~v~~ll~~~ 418 (532)
..-|.+|||..+|+|...|...+..+
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rA 63 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKA 63 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 46799999999999999999886543
No 432
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=37.95 E-value=60 Score=27.56 Aligned_cols=64 Identities=9% Similarity=0.093 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 347 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 347 YA~~wIr~aI~~~ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
|..+.+.+.+.+.+........++...+..+.-+ ....+...+..+||+.+|++...+..++..
T Consensus 17 ~~l~~~~~~~~~~~~~~~~~~glt~~q~~vL~~l-------~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~ 80 (148)
T 3jw4_A 17 YLIRSIGMKLKTSADARLAELGLNSQQGRMIGYI-------YENQESGIIQKDLAQFFGRRGASITSMLQG 80 (148)
T ss_dssp HHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHH-------HHHTTTCCCHHHHHHC------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH-------HhCCCCCCCHHHHHHHHCCChhHHHHHHHH
Confidence 3334444444444443333334444444433332 222223678999999999999888777654
No 433
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=37.57 E-value=20 Score=27.43 Aligned_cols=51 Identities=12% Similarity=0.147 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 468 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
+++.+..+|...|-.+.. ......+||..+|++...|..+...-..|.|..
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da2_A 14 FTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKS 65 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhc
Confidence 566666777777653221 122457899999999999999998877776653
No 434
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=37.02 E-value=16 Score=32.21 Aligned_cols=43 Identities=19% Similarity=0.215 Sum_probs=33.5
Q ss_pred cCCHHHHHHHHHHh-cccCCCCCCHHHHHH----Hh--CCCHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRF-GIEDGKPKSLSEVGN----IF--GLSKERVRQLESRA 511 (532)
Q Consensus 467 ~L~~rER~VL~LRy-GL~~~e~~Tl~EIAe----~L--gISrerVRqie~rA 511 (532)
.|+..|+.-|..++ - ...++|..+||. .| ||++.+|+.+++.-
T Consensus 11 ~lT~~qK~~i~~~~~~--~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 11 AITEHEKRALRHYFFQ--LQNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCCSHHHHHHHHHHHS--SSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 56777777776666 2 225789999999 99 99999999998763
No 435
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=36.93 E-value=74 Score=30.34 Aligned_cols=33 Identities=18% Similarity=0.076 Sum_probs=24.7
Q ss_pred HHHHHHHhhhCCCCcHHHHHHHccCCHHHHHHH
Q 009567 253 KEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSE 285 (532)
Q Consensus 253 ~~~~~l~~~~g~~pt~~ewA~aag~~~~~L~~~ 285 (532)
++..-++..+..+++..++|+.+|++...|.+.
T Consensus 7 ~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~ 39 (292)
T 1d5y_A 7 DLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRM 39 (292)
T ss_dssp HHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHH
Confidence 344455666677889999999999988777655
No 436
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=36.80 E-value=3.5 Score=37.08 Aligned_cols=44 Identities=23% Similarity=0.272 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 468 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
+..-.+.|+. .+. .|..+|..|||+.+|+|+.+|| +++++|...
T Consensus 11 ~d~l~~~Il~-~l~--~~~~ls~~eLa~~lgvSr~~vr----~al~~L~~~ 54 (163)
T 2gqq_A 11 LDRIDRNILN-ELQ--KDGRISNVELSKRVGLSPTPCL----ERVRRLERQ 54 (163)
T ss_dssp CCSHHHHHHH-HHH--HCSSCCTTGGGTSSSCCTTTSS----STHHHHHHH
T ss_pred hhHHHHHHHH-HHH--hCCCCCHHHHHHHHCcCHHHHH----HHHHHHHHC
Confidence 5555667776 332 3367899999999999999997 466667553
No 437
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=36.66 E-value=88 Score=23.88 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHhcc-cCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 009567 468 LNPKERCIVRLRFGI-EDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 519 (532)
Q Consensus 468 L~~rER~VL~LRyGL-~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l 519 (532)
+++.+..+|...|.- +.. ......+||..+|+|...|..+...-..|.|...
T Consensus 8 ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 8 MTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 577778888888852 211 1223678999999999999999988888887754
No 438
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=36.52 E-value=40 Score=26.49 Aligned_cols=53 Identities=13% Similarity=0.029 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 009567 468 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 520 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~ 520 (532)
+++.+..+|...|-.+.. ......+||..+|++...|..+...-..|.|....
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 14 FTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 566667777777753221 12245789999999999999999888888877543
No 439
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=36.35 E-value=68 Score=25.54 Aligned_cols=70 Identities=11% Similarity=-0.014 Sum_probs=39.3
Q ss_pred CCCHHHHHHHhCCCHHH----HHHHHHhcCCCcccCCCC--CCCCCcchhhhcccCCCCChhHHHHHHHHHHHHHHHHhc
Q 009567 394 SPDKEDLARRVGITVEK----LERLIFITRMPLSMQQPV--WADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTL 467 (532)
Q Consensus 394 ~Pt~eEIA~~lgis~e~----v~~ll~~~~~~iSLD~~v--~~d~~~~l~d~i~d~~~~~pee~~~~~~l~~~L~~~L~~ 467 (532)
.-|..++|+.+|++... |..+...... .+++.-. ..--+.++.+++... + ....+...+..
T Consensus 14 glsq~~lA~~~gis~~~~~~~is~~E~g~~~-p~~~~l~~la~~l~v~~~~l~~~~------~------~~~~~~~~~~~ 80 (98)
T 3lfp_A 14 GISQEKLGVLAGIDEASASARMNQYEKGKHA-PDFEMANRLAKVLKIPVSYLYTPE------D------DLAQIILTWNE 80 (98)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHHHTSSC-CCHHHHHHHHHHHTSCGGGGGCCC------H------HHHHHHHHHTT
T ss_pred CCCHHHHHHHhCCCcchhhhHHHHHHCCCCC-CCHHHHHHHHHHHCcCHHHHhCCC------h------hHHHHHHHHHh
Confidence 35789999999999998 7777654332 2222100 000011122222211 1 11345567899
Q ss_pred CCHHHHHHH
Q 009567 468 LNPKERCIV 476 (532)
Q Consensus 468 L~~rER~VL 476 (532)
|++.++..|
T Consensus 81 l~~~~~~~~ 89 (98)
T 3lfp_A 81 LNEQERKRI 89 (98)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 999999988
No 440
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=36.28 E-value=28 Score=29.60 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESRA 511 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~rA 511 (532)
++.|+.+||+.+|+|+.++.++.++.
T Consensus 26 ~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 26 SPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp SCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 67999999999999999998877765
No 441
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=36.06 E-value=47 Score=33.82 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=29.0
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 009567 473 RCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 513 (532)
Q Consensus 473 R~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALk 513 (532)
+.||.+.+- ..+.|..|||+.+|+|+.+|.++..+-++
T Consensus 19 ~~il~~l~~---~~~~sr~~la~~~~ls~~tv~~~v~~L~~ 56 (406)
T 1z6r_A 19 GAVYRLIDQ---LGPVSRIDLSRLAQLAPASITKIVHEMLE 56 (406)
T ss_dssp HHHHHHHHS---SCSCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---cCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 446655442 25899999999999999999988765544
No 442
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=35.88 E-value=24 Score=34.05 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 009567 485 GKPKSLSEVGNIFGLSKERVRQLE 508 (532)
Q Consensus 485 ~e~~Tl~EIAe~LgISrerVRqie 508 (532)
+.++|+.|||+.+|+++++|..+.
T Consensus 19 ~~~lsl~eia~~lgl~ksT~~RlL 42 (260)
T 3r4k_A 19 RLEIGLSDLTRLSGMNKATVYRLM 42 (260)
T ss_dssp BSEEEHHHHHHHHCSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHH
Confidence 468999999999999999996544
No 443
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=35.79 E-value=77 Score=26.21 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=20.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 394 SPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 394 ~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
..+..+||+.+|++...+..++..
T Consensus 47 ~~~~~ela~~l~~~~~tvs~~l~~ 70 (139)
T 3bja_A 47 KVSMSKLIENMGCVPSNMTTMIQR 70 (139)
T ss_dssp SEEHHHHHHHCSSCCTTHHHHHHH
T ss_pred CcCHHHHHHHHCCChhHHHHHHHH
Confidence 468999999999998888777654
No 444
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=35.78 E-value=61 Score=27.21 Aligned_cols=50 Identities=12% Similarity=0.014 Sum_probs=37.9
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-C----CCHHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-G----LSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~L-g----ISrerVRqie~rALkKLR~ 517 (532)
.|+++|..+|.+.. ...|+..|.++|.+.+ | .+..+|...+.+.++||..
T Consensus 36 ~Lt~~E~~lL~~L~-~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 90 (120)
T 2z9m_A 36 ELTHREFELFHYLS-KHMGQVMTREHLLQTVWGYDYFGDVRTVDVTIRRLREKIED 90 (120)
T ss_dssp CCCHHHHHHHHHHH-TTTTCCEEHHHHHHHHHCTTCCSCTHHHHHHHHHHHHHHCS
T ss_pred eCCHHHHHHHHHHH-HCCCceEcHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhc
Confidence 58999999988765 4566889999999865 2 5677888777776666643
No 445
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=35.70 E-value=24 Score=28.68 Aligned_cols=24 Identities=17% Similarity=0.182 Sum_probs=18.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 394 SPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 394 ~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
.-|..++|+.+|++...|..+...
T Consensus 14 gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 14 GYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcC
Confidence 357788888888888888887664
No 446
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=35.69 E-value=2.8e+02 Score=26.47 Aligned_cols=114 Identities=13% Similarity=0.170 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-CCCCCHhhHHHHHHHHHHHhhhhhCCcCCCchhhHHHHHHHHHHHHHHHhhcccccc
Q 009567 291 SSREKLINANLRLVVHVAKQYQ-GRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRL 369 (532)
Q Consensus 291 ~Are~LI~~nlrLV~sIAkrY~-~~g~~~eDLiQEG~iGLikAiekFDp~kG~rFSTYA~~wIr~aI~~~ir~~~r~IRl 369 (532)
...+.+...-...+..+-.+|- ..|++.+.|.+--. ..+++ + -|....-.++... .+......+++
T Consensus 62 ~~~~~~~~~l~~~L~~~H~~~P~~~G~~~~~L~~~~~-------~~~~~-~--l~~~ll~~l~~~g---~l~~~~~~v~l 128 (258)
T 1lva_A 62 ERYQAWWQAVTRALEEFHSRYPLRPGLAREELRSRYF-------SRLPA-R--VYQALLEEWSREG---RLQLAANTVAL 128 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTSSCEEHHHHHHHHC-------TTSCH-H--HHHHHHHHHHHTT---SEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccCCCHHHHHHhcc-------ccCCH-H--HHHHHHHHHHHCC---CEEecCCEEeC
Confidence 4555555555555555555553 35788777765331 11111 0 1211111222211 13334456777
Q ss_pred chhHH---HHHH-HHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 370 PENIY---TLLS-KVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 370 P~~~~---~~l~-ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
|.|.. .... ...+....+...+-..|...+++..+|++...+..++..
T Consensus 129 ~~h~~~~~~~~~~~~~~i~~~~~~~g~~pp~~~dl~~~l~~~~~~~~~~l~~ 180 (258)
T 1lva_A 129 AGFTPSFSETQKKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHY 180 (258)
T ss_dssp TTCCCCCCHHHHHHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHhHhCCCHHHHHHHHHH
Confidence 76432 1222 223334444444545679999999999999988887654
No 447
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=35.66 E-value=88 Score=27.02 Aligned_cols=64 Identities=20% Similarity=0.207 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 345 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 345 STYA~~wIr~aI~~~ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
..|..+.+.+.+.+.+........++..-+..+.-+. ..+ ..+..+||+.+|++...+..++..
T Consensus 20 l~~~l~~~~~~~~~~~~~~l~~~glt~~q~~iL~~l~--------~~~-~~t~~eLa~~l~~~~~tvs~~l~~ 83 (162)
T 3k0l_A 20 LSYMIARVDRIISKYLTEHLSALEISLPQFTALSVLA--------AKP-NLSNAKLAERSFIKPQSANKILQD 83 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH--------HCT-TCCHHHHHHHHTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH--------HCC-CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3455566666666666554444445554444444331 233 578999999999999888877654
No 448
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=35.19 E-value=33 Score=26.80 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 468 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
+++.+..+|...|-.+.. ......+||..+|++...|+.+...-..|.|..
T Consensus 24 ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 24 ITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp CCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 344444555555532211 122347899999999999999998888887753
No 449
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=35.19 E-value=33 Score=27.76 Aligned_cols=30 Identities=27% Similarity=0.512 Sum_probs=25.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 485 GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 485 ~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
|++++-.|||+.+||.+.-| .+|+++|++.
T Consensus 32 G~PlkageIae~~GvdKKeV----dKaik~LKkE 61 (80)
T 2lnb_A 32 GSPVKLAQLVKECQAPKREL----NQVLYRMKKE 61 (80)
T ss_dssp TSCEEHHHHHHHHTSCHHHH----HHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCCCHHHH----HHHHHHHHHc
Confidence 48999999999999998777 5778888764
No 450
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=35.06 E-value=1.2e+02 Score=25.20 Aligned_cols=62 Identities=15% Similarity=0.119 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 347 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 347 YA~~wIr~aI~~~ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
|..+.+.+.+.+.+........++..-+..+..+. ..+ ..+..+||+.+|++...+..++..
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l~--------~~~-~~t~~~la~~l~~s~~~vs~~l~~ 66 (144)
T 1lj9_A 5 REIGMIARALDSISNIEFKELSLTRGQYLYLVRVC--------ENP-GIIQEKIAELIKVDRTTAARAIKR 66 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGTCTTTHHHHHHHHH--------HST-TEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH--------HCc-CcCHHHHHHHHCCCHhHHHHHHHH
Confidence 33444555555555544444445544444443331 122 468999999999999999887764
No 451
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=35.01 E-value=71 Score=26.53 Aligned_cols=45 Identities=11% Similarity=0.034 Sum_probs=28.5
Q ss_pred HHHHHhhCCCCCHhhHHHHHHHHHHHhhhhhCCcCCCchhhHHHHH
Q 009567 306 HVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 351 (532)
Q Consensus 306 sIAkrY~~~g~~~eDLiQEG~iGLikAiekFDp~kG~rFSTYA~~w 351 (532)
.+........++++||.+...+.--.--..|.-. |..|..|...+
T Consensus 14 ~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~-G~s~~~~~~~~ 58 (120)
T 3mkl_A 14 TVINNNIAHEWTLARIASELLMSPSLLKKKLREE-ETSYSQLLTEC 58 (120)
T ss_dssp HHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHHc-CCCHHHHHHHH
Confidence 3333344456888888887776665555566655 77777665543
No 452
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=34.83 E-value=69 Score=27.17 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
++.|+.+||..+|+|....++..++
T Consensus 92 ~~~sl~~lA~~~g~S~~~f~r~Fk~ 116 (133)
T 1u8b_A 92 TPVTLEALADQVAMSPFHLHRLFKA 116 (133)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 6899999999999998888765544
No 453
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=34.81 E-value=1.5e+02 Score=24.30 Aligned_cols=62 Identities=10% Similarity=0.102 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 346 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 346 TYA~~wIr~aI~~~ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
.|..+.+.+.+.+.+.....- .++..-+..+.-+. ..+ ..+..+||+.+|++...+..++..
T Consensus 14 ~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~iL~~l~--------~~~-~~t~~ela~~l~~~~~tvs~~l~~ 75 (140)
T 2nnn_A 14 GFILRQANQRYAALFANGIGN-GLTPTQWAALVRLG--------ETG-PCPQNQLGRLTAMDAATIKGVVER 75 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHCSS-CCCHHHHHHHHHHH--------HHS-SBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH--------HcC-CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 344445555566666554443 45544444443331 123 578999999999999999888764
No 454
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=34.60 E-value=33 Score=33.76 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=28.9
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHhC-------CCHHHHHHHHHHH
Q 009567 472 ERCIVRLRFGIEDGKPKSLSEVGNIFG-------LSKERVRQLESRA 511 (532)
Q Consensus 472 ER~VL~LRyGL~~~e~~Tl~EIAe~Lg-------ISrerVRqie~rA 511 (532)
.|.+|.+.|- .|+|..+|++.|+ +|+.+|..+.++-
T Consensus 11 ~R~~i~~~~~----~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~ 53 (345)
T 3hot_A 11 TRTVLIFCFH----LKKTAAESHRMLVEAFGEQVPTVKTCERWFQRF 53 (345)
T ss_dssp HHHHHHHHHH----TTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 3455666665 7899999999977 9999999988764
No 455
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=34.54 E-value=57 Score=25.40 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 009567 468 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 519 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l 519 (532)
+++.+..+|...|..+.. ......+||..+|++...|..+...-..|.|...
T Consensus 20 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 72 (77)
T 1puf_A 20 YTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKIN 72 (77)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhh
Confidence 444555566555542211 2224578999999999999999988888777654
No 456
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=34.38 E-value=36 Score=28.39 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=19.3
Q ss_pred CCCC--HHHHHHHh-CCCHHHHHHHHH
Q 009567 486 KPKS--LSEVGNIF-GLSKERVRQLES 509 (532)
Q Consensus 486 e~~T--l~EIAe~L-gISrerVRqie~ 509 (532)
.+++ +.||++.+ |||..++.+.+.
T Consensus 39 g~~~~~~~eL~~~l~gis~~~ls~~L~ 65 (111)
T 3df8_A 39 GSTRQNFNDIRSSIPGISSTILSRRIK 65 (111)
T ss_dssp SSSCBCHHHHHHTSTTCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHccCCCHHHHHHHHH
Confidence 3556 99999999 999999875443
No 457
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=34.32 E-value=1.4e+02 Score=24.76 Aligned_cols=24 Identities=17% Similarity=0.018 Sum_probs=21.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 394 SPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 394 ~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
..+..+||+.+|++...+..++..
T Consensus 50 ~~~~~ela~~l~~s~~tvs~~l~~ 73 (146)
T 2gxg_A 50 PKTMAYLANRYFVTQSAITASVDK 73 (146)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CcCHHHHHHHhCCCchhHHHHHHH
Confidence 578999999999999999887754
No 458
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.30 E-value=51 Score=27.42 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=36.3
Q ss_pred HhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 009567 465 LTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 516 (532)
Q Consensus 465 L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALkKLR 516 (532)
+..|++.|+.|+.+..- .+++|.+.++|...+|++...|. ++|++|-
T Consensus 32 ~~~Lt~~E~lVy~~I~~-aGn~GIw~kdL~~~tnL~~~~vt----kiLK~LE 78 (95)
T 2yu3_A 32 MKGSDNQEKLVYQIIED-AGNKGIWSRDVRYKSNLPLTEIN----KILKNLE 78 (95)
T ss_dssp CCSCSHHHHHHHHHHHH-HTTSCEEHHHHHHHHTCCHHHHH----HHHHHHH
T ss_pred hcCCCHHHHHHHHHHHH-hCCCCCCHHHHHHHhCCCHHHHH----HHHHHHH
Confidence 36788888888887653 24589999999999999988875 5555553
No 459
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=34.15 E-value=1.3e+02 Score=25.29 Aligned_cols=24 Identities=8% Similarity=0.183 Sum_probs=21.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 394 SPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 394 ~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
..+..+||+.+|++...+..++..
T Consensus 54 ~~t~~ela~~l~~~~~~vs~~l~~ 77 (152)
T 3bj6_A 54 GATAPQLGAALQMKRQYISRILQE 77 (152)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 568999999999999999888764
No 460
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=34.03 E-value=40 Score=34.93 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=37.8
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 458 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 458 ~~~L~~~L~--~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
...+...+. .|++.|-.||...+. ..+.++|..|||+.+++++.+|..++.|
T Consensus 390 ~~~~~~~~~~~~lt~~q~~vl~~l~~-~~~~~~~~~~l~~~~~~~~~~~t~~~~~ 443 (487)
T 1hsj_A 390 KKFFRDTKKKFNLNYEEIYILNHILR-SESNEISSKEIAKCSEFKPYYLTKALQK 443 (487)
T ss_dssp HHHHHHHSSSCCCCHHHHHHHHHHHT-CSCSEEEHHHHHHSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHh-CCCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 344455553 599999988887664 1125799999999999999999654443
No 461
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=34.02 E-value=16 Score=32.49 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=23.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHH
Q 009567 487 PKSLSEVGNIFGLSKERVRQLESRAL 512 (532)
Q Consensus 487 ~~Tl~EIAe~LgISrerVRqie~rAL 512 (532)
.+|..|+|+.+|||..++|.++...+
T Consensus 16 ~~~I~evA~~~gvs~~tLR~Ye~~Gl 41 (148)
T 3gpv_A 16 YYTIGQVAKMQHLTISQIRYYDKQGL 41 (148)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHTTC
T ss_pred ceeHHHHHHHHCcCHHHHHHHHHCCC
Confidence 47899999999999999999988765
No 462
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=33.96 E-value=19 Score=32.31 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESRAL 512 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~rAL 512 (532)
..+|..|+|+.+|||..++|.++...+
T Consensus 10 ~~~~i~e~A~~~gvs~~TLR~ye~~Gl 36 (154)
T 2zhg_A 10 ALLTPGEVAKRSGVAVSALHFYESKGL 36 (154)
T ss_dssp CCBCHHHHHHHHTSCHHHHHHHHHTTS
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHcCC
Confidence 458999999999999999999988764
No 463
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=33.91 E-value=99 Score=23.68 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHhcc-cCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 009567 468 LNPKERCIVRLRFGI-EDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 520 (532)
Q Consensus 468 L~~rER~VL~LRyGL-~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~ 520 (532)
+++.+..+|...|.. +.. ......+||..+|+|...|..+...-..|.|..-.
T Consensus 9 ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 9 PTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 567777788777752 221 12346789999999999999999888888777543
No 464
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=33.91 E-value=1.1e+02 Score=26.32 Aligned_cols=64 Identities=13% Similarity=0.090 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 345 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 345 STYA~~wIr~aI~~~ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
-.|....+.+.+.+.+........++..-+..+.-+. .. ...+..+||+.+|++...+..++..
T Consensus 24 l~~~l~~~~~~~~~~~~~~l~~~~lt~~q~~vL~~l~--------~~-~~~t~~eLa~~l~~~~~tvs~~l~~ 87 (159)
T 3s2w_A 24 IGKAISYLYRYGQIYIGKKIEPYGIGSGQFPFLMRLY--------RE-DGINQESLSDYLKIDKGTTARAIQK 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCCTTTHHHHHHHH--------HS-CSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH--------HC-CCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3455555666666666655444455554444444331 12 2468999999999999999887754
No 465
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=33.89 E-value=20 Score=35.02 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=18.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 009567 485 GKPKSLSEVGNIFGLSKERVRQLE 508 (532)
Q Consensus 485 ~e~~Tl~EIAe~LgISrerVRqie 508 (532)
+.++|+.|||+.+|+++++|..+.
T Consensus 43 ~~~ltl~eia~~lgl~ksTv~RlL 66 (275)
T 3mq0_A 43 PRDLTAAELTRFLDLPKSSAHGLL 66 (275)
T ss_dssp SSCEEHHHHHHHHTCC--CHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHH
Confidence 368999999999999999996544
No 466
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.61 E-value=28 Score=27.44 Aligned_cols=51 Identities=16% Similarity=0.168 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 468 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
+++.+..+|...|-.+.. ......+||..+|++...|+.+...-..|.|+.
T Consensus 24 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 24 FTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 455555666666643211 222457899999999999999988877776643
No 467
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling Pro; NMR {Helicobacter pylori}
Probab=33.42 E-value=14 Score=30.54 Aligned_cols=50 Identities=4% Similarity=-0.056 Sum_probs=37.8
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~L-----gISrerVRqie~rALkKLR~ 517 (532)
.|+++|..+|.+.. ...|...|.++|.+.+ .++..+|++.+.+..+||..
T Consensus 29 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 83 (109)
T 2hqn_A 29 EVKGKPFEVLTHLA-RHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDK 83 (109)
T ss_dssp ECCCSTHHHHHHHH-HHTCSEEEHHHHHHHHCCSCGGGCTTHHHHHHHHHHHHTTT
T ss_pred EcCHHHHHHHHHHH-HCCCeeEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhcc
Confidence 47888888887654 3445889999999988 46778888877777777754
No 468
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=33.31 E-value=71 Score=26.99 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.+.+..|+++.+|+++..++.+...
T Consensus 19 ~p~~~~~la~~~~~~~~~~~~~l~~ 43 (121)
T 2pjp_A 19 EPWWVRDLAKETGTDEQAMRLTLRQ 43 (121)
T ss_dssp SCEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 5779999999999999999876543
No 469
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=33.29 E-value=2e+02 Score=23.94 Aligned_cols=24 Identities=4% Similarity=0.133 Sum_probs=20.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 394 SPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 394 ~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
..+..+||+.+|++...+..++..
T Consensus 45 ~~t~~eLa~~l~~~~~tvs~~l~~ 68 (145)
T 3g3z_A 45 SRTQKHIGEKWSLPKQTVSGVCKT 68 (145)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 378999999999999999888754
No 470
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.12 E-value=46 Score=25.87 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 468 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
+++.+..+|...|..+.. ......+||..+|++...|+.+...-..|.|+.
T Consensus 15 ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~ 66 (76)
T 2dn0_A 15 KSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNL 66 (76)
T ss_dssp CCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSC
T ss_pred CCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHh
Confidence 455666666666643321 334568999999999999999998887776653
No 471
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=32.96 E-value=42 Score=26.53 Aligned_cols=52 Identities=10% Similarity=0.127 Sum_probs=38.0
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
.+++.+..+|...|.-+.. ......+||..+|++...|..+...-..|.|+.
T Consensus 26 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 26 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 4677777777777753221 122457899999999999999998888777653
No 472
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=32.82 E-value=31 Score=31.17 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 485 GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 485 ~e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
++..|.++||+.+|||+..|+++ +.+|++
T Consensus 26 ~~~~s~~~IA~~~~is~~~l~ki----l~~L~~ 54 (162)
T 3k69_A 26 DSKVASRELAQSLHLNPVMIRNI----LSVLHK 54 (162)
T ss_dssp TSCBCHHHHHHHHTSCGGGTHHH----HHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 46799999999999999888754 555655
No 473
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=32.72 E-value=22 Score=27.23 Aligned_cols=50 Identities=6% Similarity=0.013 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 468 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
+++.+..+|...|-.+.. ......+||..+|++...|..+...-..|.|.
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk 64 (70)
T 2cra_A 14 YSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 64 (70)
T ss_dssp SCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcc
Confidence 456666677776653221 12245789999999999999998877766554
No 474
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=32.47 E-value=30 Score=34.48 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
.++|.+|+|+.+|||...|.+++..
T Consensus 24 ~gLtqeelA~~~gvS~~~is~iE~G 48 (292)
T 3pxp_A 24 RVWTQEVLAERTQLPKRTIERIENG 48 (292)
T ss_dssp CBCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 7899999999999999999999974
No 475
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=32.32 E-value=25 Score=33.15 Aligned_cols=28 Identities=11% Similarity=0.259 Sum_probs=22.8
Q ss_pred cCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 009567 483 EDGKPKSLSEVGNIFGLSKERVRQLESR 510 (532)
Q Consensus 483 ~~~e~~Tl~EIAe~LgISrerVRqie~r 510 (532)
..+.+.|+.++|+.||+|+.+|++.+++
T Consensus 23 ~~~~~~s~s~aA~~L~isq~avSr~I~~ 50 (230)
T 3cta_A 23 SNRAYLTSSKLADMLGISQQSASRIIID 50 (230)
T ss_dssp SSEEECCHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 3446789999999999999999866543
No 476
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=32.27 E-value=1.3e+02 Score=25.39 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=20.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 394 SPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 394 ~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
..+..+||+.+|++...+..++..
T Consensus 51 ~~t~~ela~~l~~s~~tvs~~l~~ 74 (155)
T 1s3j_A 51 SLKVSEIAERMEVKPSAVTLMADR 74 (155)
T ss_dssp EEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 468999999999999999888764
No 477
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=32.11 E-value=36 Score=26.26 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc
Q 009567 468 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 521 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~~ 521 (532)
.++.+..+|...|-.+.. ......+||..+|++...|+.+...-..|.|+.-..
T Consensus 13 ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 13 KTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcC
Confidence 455566666666642211 233567899999999999999998888877765443
No 478
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=32.00 E-value=46 Score=27.62 Aligned_cols=22 Identities=9% Similarity=0.259 Sum_probs=18.1
Q ss_pred CCHHHHHHHhCCCHHHHHHHHH
Q 009567 488 KSLSEVGNIFGLSKERVRQLES 509 (532)
Q Consensus 488 ~Tl~EIAe~LgISrerVRqie~ 509 (532)
.+..+.|+.||||+.+++..++
T Consensus 72 gn~~~AA~~LGIsR~TL~rkLk 93 (98)
T 1eto_A 72 GNQTRAALMMGINRGTLRKKLK 93 (98)
T ss_dssp TCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHH
Confidence 4788999999999999875443
No 479
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.96 E-value=53 Score=26.54 Aligned_cols=52 Identities=12% Similarity=-0.080 Sum_probs=37.4
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
..++.+..+|...|--+.. ......+||..+|++...|..+...-..|.|..
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~ 71 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSM 71 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHH
Confidence 3566677777777753321 223467899999999999999998887776653
No 480
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=31.14 E-value=49 Score=27.07 Aligned_cols=24 Identities=8% Similarity=0.160 Sum_probs=21.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 394 SPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 394 ~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
..+..|||+.+|+|+..|+..+..
T Consensus 16 ~vsv~eLA~~l~VS~~TIRrDL~~ 39 (87)
T 2k02_A 16 RMEAKQLSARLQTPQPLIDAMLER 39 (87)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHH
Confidence 578899999999999999988764
No 481
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=30.99 E-value=93 Score=25.91 Aligned_cols=79 Identities=11% Similarity=0.106 Sum_probs=42.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCC--CCCCCCcchhhhcccCCCCChhHHHHHHHHHHHHHHHHhcCCHH
Q 009567 394 SPDKEDLARRVGITVEKLERLIFITRMPLSMQQP--VWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPK 471 (532)
Q Consensus 394 ~Pt~eEIA~~lgis~e~v~~ll~~~~~~iSLD~~--v~~d~~~~l~d~i~d~~~~~pee~~~~~~l~~~L~~~L~~L~~r 471 (532)
.-|..++|+.+|++...|..+...... .+++.- +..--+.++.+++......... .....+...+..|++.
T Consensus 25 glsq~~lA~~~gis~~~is~~E~g~~~-p~~~~l~~ia~~l~v~~~~l~~~~~~~~~~------~~~~~l~~~~~~l~~~ 97 (126)
T 3ivp_A 25 GLTREQVGAMIEIDPRYLTNIENKGQH-PSLQVLYDLVSLLNVSVDEFFLPASSQVKS------TKRRQLENKIDNFTDA 97 (126)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHSCCC-CCHHHHHHHHHHHTCCSHHHHSCCCCCCCC------HHHHHHHHHTTTCCHH
T ss_pred CCCHHHHHHHhCcCHHHHHHHHCCCCC-CCHHHHHHHHHHHCcCHHHHhCCCccccch------HHHHHHHHHHHcCCHH
Confidence 458889999999999999888764432 222210 0000011222232222211111 1223466677889988
Q ss_pred HHHHHHHH
Q 009567 472 ERCIVRLR 479 (532)
Q Consensus 472 ER~VL~LR 479 (532)
++.++.-.
T Consensus 98 ~~~~i~~~ 105 (126)
T 3ivp_A 98 DLVIMESV 105 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877543
No 482
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=30.96 E-value=65 Score=25.76 Aligned_cols=52 Identities=10% Similarity=0.122 Sum_probs=38.5
Q ss_pred hcCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 009567 466 TLLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 517 (532)
Q Consensus 466 ~~L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~ 517 (532)
..+++.+..+|...|..+.. ......+||..+|++...|..+...-..|.|+
T Consensus 33 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk 85 (88)
T 2r5y_A 33 TSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 85 (88)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHh
Confidence 34677788888888853221 12246789999999999999999887777664
No 483
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=30.61 E-value=2e+02 Score=23.91 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=17.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 394 SPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 394 ~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
..+..+||+.+|++...+..++..
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~l~~ 74 (142)
T 3ech_A 51 GLNLQDLGRQMCRDKALITRKIRE 74 (142)
T ss_dssp TCCHHHHHHHHC---CHHHHHHHH
T ss_pred CcCHHHHHHHhCCCHHHHHHHHHH
Confidence 578999999999999888877654
No 484
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=30.51 E-value=1.1e+02 Score=25.42 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=21.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 394 SPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 394 ~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
..+..+||+.+|++...+..++..
T Consensus 47 ~~~~~~la~~l~~s~~tvs~~l~~ 70 (145)
T 2a61_A 47 PKRPGELSVLLGVAKSTVTGLVKR 70 (145)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchhHHHHHHH
Confidence 578999999999999999888764
No 485
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=30.40 E-value=3.1e+02 Score=28.30 Aligned_cols=33 Identities=36% Similarity=0.654 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhhCCCCcHHHHHHHcc--CCHHHH
Q 009567 250 RLEKEKSKLQSQFGREPTLIEWAKAIG--LSCRDL 282 (532)
Q Consensus 250 ~le~~~~~l~~~~g~~pt~~ewA~aag--~~~~~L 282 (532)
++.+.+..+...+|++|+..+.|...| ++.+.+
T Consensus 270 ~lrr~~~~l~~~~~r~p~~~eiA~~l~~~~~~~~v 304 (423)
T 2a6h_F 270 KLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRV 304 (423)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHHHHCTTCCHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHH
Confidence 344556677778899999999999988 876655
No 486
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=30.31 E-value=2.1e+02 Score=23.68 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=21.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 394 SPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 394 ~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
..+..+||+.+|++...+..++..
T Consensus 50 ~~~~~~la~~l~i~~~~vs~~l~~ 73 (147)
T 2hr3_A 50 DVTPSELAAAERMRSSNLAALLRE 73 (147)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCChhhHHHHHHH
Confidence 578999999999999999887764
No 487
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=30.28 E-value=1.2e+02 Score=26.01 Aligned_cols=62 Identities=10% Similarity=0.016 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 347 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 347 YA~~wIr~aI~~~ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
|..+.+.+.+.+.+........++..-+..+.-+ ...+ ..+..+||+.+|++...+..++..
T Consensus 28 ~~l~~~~~~~~~~~~~~l~~~~lt~~~~~iL~~l--------~~~~-~~t~~ela~~l~is~~tvs~~l~~ 89 (162)
T 3cjn_A 28 YLMNRIMGRYNANLRKEMTALGLSTAKMRALAIL--------SAKD-GLPIGTLGIFAVVEQSTLSRALDG 89 (162)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHTCCHHHHHHHHHH--------HHSC-SEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH--------HHCC-CCCHHHHHHHHCCChhHHHHHHHH
Confidence 4445555555555544333333444333333322 1223 568999999999999999888764
No 488
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=30.25 E-value=68 Score=27.49 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESRAL 512 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~rAL 512 (532)
+|+|+.|||..-|++..+|-..+.+..
T Consensus 31 ~G~sleeIA~~R~L~~~TI~~Hl~~~v 57 (122)
T 3iuo_A 31 RKVALDDIAVSHGLDFPELLSEVETIV 57 (122)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHHHHH
Confidence 899999999999999999977666553
No 489
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=30.10 E-value=58 Score=25.97 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=36.4
Q ss_pred cCCHHHHHHHHHHhcc---cCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 009567 467 LLNPKERCIVRLRFGI---EDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLK 516 (532)
Q Consensus 467 ~L~~rER~VL~LRyGL---~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR 516 (532)
.+++.+..+|.-.|.- ... ....-.+||..+|++...|+.+......|.|
T Consensus 33 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 33 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp CCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 4777788888877763 111 1223568899999999999999988777654
No 490
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=29.90 E-value=72 Score=28.76 Aligned_cols=45 Identities=9% Similarity=-0.010 Sum_probs=28.2
Q ss_pred HHHhcCCHHHHH-HHHHHhcccCCCCCCHHHHHHHhC-CCHHHHHHHH
Q 009567 463 NLLTLLNPKERC-IVRLRFGIEDGKPKSLSEVGNIFG-LSKERVRQLE 508 (532)
Q Consensus 463 ~~L~~L~~rER~-VL~LRyGL~~~e~~Tl~EIAe~Lg-ISrerVRqie 508 (532)
..+.-|....|. ||.+..+ ......|..||++.++ ||+.+|++.+
T Consensus 21 ~~~~~l~~~tR~~IL~~Ll~-~p~~~~ta~eL~~~l~~lS~aTVyrhL 67 (151)
T 3u1d_A 21 ERRRFVLHETRLDVLHQILA-QPDGVLSVEELLYRNPDETEANLRYHV 67 (151)
T ss_dssp HHHHHHCCHHHHHHHHHHHH-STTSCBCHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHc-CCCCCCCHHHHHHhcCCCCHHHHHHHH
Confidence 334444444444 4444433 1123479999999999 9999998654
No 491
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=29.88 E-value=61 Score=24.79 Aligned_cols=51 Identities=8% Similarity=-0.013 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 468 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
+++.+..+|...|-.+.. ......+||..+|++...|+.+...-..|.|..
T Consensus 16 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 67 (75)
T 2m0c_A 16 FTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 67 (75)
T ss_dssp SCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHH
Confidence 455666666666643221 233567899999999999999999888777653
No 492
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=29.51 E-value=70 Score=28.38 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=17.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHH
Q 009567 395 PDKEDLARRVGITVEKLERLIF 416 (532)
Q Consensus 395 Pt~eEIA~~lgis~e~v~~ll~ 416 (532)
.+..+||+.+|++...+..++.
T Consensus 87 ~t~~eLa~~l~is~~tvs~~l~ 108 (181)
T 2fbk_A 87 LRPTELSALAAISGPSTSNRIV 108 (181)
T ss_dssp BCHHHHHHHCSCCSGGGSSHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHH
Confidence 6899999999999877665544
No 493
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.48 E-value=55 Score=25.44 Aligned_cols=51 Identities=8% Similarity=0.084 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 009567 468 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 518 (532)
Q Consensus 468 L~~rER~VL~LRyGL~~~-e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~ 518 (532)
.++.+..+|...|..+.. ......+||..+|++...|..+...-..|.|..
T Consensus 14 ~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (75)
T 2da5_A 14 RAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAE 65 (75)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHS
T ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHh
Confidence 466666777777653221 223457899999999999999998877777664
No 494
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=29.38 E-value=1.1e+02 Score=23.08 Aligned_cols=27 Identities=11% Similarity=0.004 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhc
Q 009567 392 NHSPDKEDLARRVGITVEKLERLIFIT 418 (532)
Q Consensus 392 gr~Pt~eEIA~~lgis~e~v~~ll~~~ 418 (532)
...-+..|||+.+|++...|...+...
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~~~r~ 55 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVHRANV 55 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 346789999999999999998876543
No 495
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=29.22 E-value=49 Score=28.86 Aligned_cols=45 Identities=18% Similarity=0.167 Sum_probs=30.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-CCCHHHHHHHH
Q 009567 461 VRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-GLSKERVRQLE 508 (532)
Q Consensus 461 L~~~L~~L~~rER~VL~LRyGL~~~e~~Tl~EIAe~L-gISrerVRqie 508 (532)
+..+++.|..+-+-.|..... + .++++.||++.+ |||..++.+.+
T Consensus 16 i~~~l~~lg~kW~l~IL~~L~--~-g~~rf~eL~~~l~gIs~~~Ls~~L 61 (131)
T 4a5n_A 16 VEFTLDVIGGKWKGILFYHMI--D-GKKRFNEFRRICPSITQRMLTLQL 61 (131)
T ss_dssp HHHHHHHHCSSSHHHHHHHHT--T-SCBCHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHHHHcCcCHHHHHHHHh--c-CCcCHHHHHHHhcccCHHHHHHHH
Confidence 445566677665543333221 2 589999999999 99988886544
No 496
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=28.87 E-value=54 Score=24.80 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHh
Q 009567 393 HSPDKEDLARRVGITVEKLERLIFI 417 (532)
Q Consensus 393 r~Pt~eEIA~~lgis~e~v~~ll~~ 417 (532)
..-+..|||+.+|+|...|...+..
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~r 53 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENK 53 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 5679999999999999999887654
No 497
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=28.60 E-value=57 Score=24.30 Aligned_cols=26 Identities=12% Similarity=0.244 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhc
Q 009567 393 HSPDKEDLARRVGITVEKLERLIFIT 418 (532)
Q Consensus 393 r~Pt~eEIA~~lgis~e~v~~ll~~~ 418 (532)
..-+.+|||+.+|+|...|...+...
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra 49 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKA 49 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 56899999999999999999887654
No 498
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=28.35 E-value=55 Score=33.73 Aligned_cols=38 Identities=11% Similarity=0.080 Sum_probs=28.2
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 009567 473 RCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 513 (532)
Q Consensus 473 R~VL~LRyGL~~~e~~Tl~EIAe~LgISrerVRqie~rALk 513 (532)
+.||.+.+- ..+.|..|||+.+|+|+.+|.++..+-++
T Consensus 42 ~~il~~l~~---~~~~sr~ela~~~gls~~tv~~~v~~L~~ 79 (429)
T 1z05_A 42 GRVYKLIDQ---KGPISRIDLSKESELAPASITKITRELID 79 (429)
T ss_dssp HHHHHHHHH---HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---cCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345554332 15899999999999999999988765544
No 499
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=28.06 E-value=57 Score=26.58 Aligned_cols=35 Identities=9% Similarity=0.162 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 520 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie~rALkKLR~~l~ 520 (532)
...+.+.||+.+||+.++|+++..--+.++...+.
T Consensus 23 a~~gQ~~vAe~~GvdeStISR~k~~~~~~~~~lLa 57 (83)
T 1zs4_A 23 AMLGTEKTAEAVGVDKSQISRWKRDWIPKFSMLLA 57 (83)
T ss_dssp HHHCHHHHHHHHTSCHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHhhHHHHHHhCCCHHHHhhhhhhHHHHHHHHHH
Confidence 35689999999999999999988866565555443
No 500
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=27.78 E-value=53 Score=27.98 Aligned_cols=23 Identities=17% Similarity=0.040 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q 009567 486 KPKSLSEVGNIFGLSKERVRQLE 508 (532)
Q Consensus 486 e~~Tl~EIAe~LgISrerVRqie 508 (532)
.+.|..+||+..|||+.++..+.
T Consensus 23 ~~~t~~~Ia~~agvs~~t~Y~~F 45 (170)
T 3egq_A 23 HEVSIEEIAREAKVSKSLIFYHF 45 (170)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHC
T ss_pred ccCcHHHHHHHhCCCchhHHHHc
Confidence 67899999999999999998753
Done!