BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009568
(532 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 871 bits (2251), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/507 (83%), Positives = 463/507 (91%), Gaps = 4/507 (0%)
Query: 1 MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFXX 60
MSLRP+ R EVRRNRYKVAVDA+EGRRRREDNMVEIRK++REESLLKKRREGLQ+Q
Sbjct: 3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 62
Query: 61 XXXXSNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
+ ++ KLESLPAM+ GV+SDD++LQLEATTQFRKLLSIERSPPIEEVIQSGVVP
Sbjct: 63 ASAATGVD--KKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
Query: 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
RFV+FL RED+PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL S SDDVREQA
Sbjct: 121 RFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQA 180
Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
VWALGNVAGDSP+CRDLVL+ GAL+PLLAQLNE KLSMLRNATWTLSNFCRGKPQP F+
Sbjct: 181 VWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFE 240
Query: 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
Q RPALPALA+L+HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSP
Sbjct: 241 QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSP 300
Query: 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
SVLIPALRTVGNIVTGDD QTQCII + ALP LL LLT + KKSIKKEACWTISNITAGN
Sbjct: 301 SVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGN 360
Query: 361 RDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLC 420
+DQIQAVI+AG++GPLVNLLQ AEFDIKKEAAWAISNATSGG+H+QIKYLV EGCIKPLC
Sbjct: 361 KDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLC 420
Query: 421 DLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH 480
DL +CPD RIVTVCLEGLENILKVGE +K + A DVN ++Q+++EAEGLEKIENLQSH
Sbjct: 421 DLLICPDIRIVTVCLEGLENILKVGETDKTL--AAGDVNVFSQMIDEAEGLEKIENLQSH 478
Query: 481 DNNEIYEKAVKILETYWLEEDDETIAA 507
DNNEIYEKAVKILE YW++E+D+T+ A
Sbjct: 479 DNNEIYEKAVKILEAYWMDEEDDTMGA 505
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/433 (85%), Positives = 403/433 (93%), Gaps = 2/433 (0%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
SLPAM+ GV+SDD++LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFV+FL RED+PQL
Sbjct: 37 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQL 96
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL S SDDVREQAVWALGNVAGDSP+C
Sbjct: 97 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC 156
Query: 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH 254
RDLVL+ GAL+PLLAQLNE KLSMLRNATWTLSNFCRGKPQP F+Q RPALPALA+L+H
Sbjct: 157 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH 216
Query: 255 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 314
SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALRTVGNIV
Sbjct: 217 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV 276
Query: 315 TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVG 374
TGDD QTQCII + ALP LL LLT + KKSIKKEACWTISNITAGN+DQIQAVI+AG++G
Sbjct: 277 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIG 336
Query: 375 PLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVC 434
PLVNLLQ AEFDIKKEAAWAISNATSGG+H+QIKYLV EGCIKPLCDL +CPD RIVTVC
Sbjct: 337 PLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVC 396
Query: 435 LEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE 494
LEGLENILKVGE +K + A DVN ++Q+++EAEGLEKIENLQSHDNNEIYEKAVKILE
Sbjct: 397 LEGLENILKVGETDKTL--AAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILE 454
Query: 495 TYWLEEDDETIAA 507
YW++E+D+T+ A
Sbjct: 455 AYWMDEEDDTMGA 467
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 508 bits (1307), Expect = e-144, Method: Compositional matrix adjust.
Identities = 284/512 (55%), Positives = 355/512 (69%), Gaps = 20/512 (3%)
Query: 10 EVRRNRYKVA--VDADEGRRRREDNMVEIRKNKREESLLKKRR-----EGLQSQQFXXXX 62
E RR +K ADE RRRR+ VE+RK KR+E+L K+R +G S +
Sbjct: 15 EYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESS 74
Query: 63 XXSNLNLQTKLES-LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPR 121
++ ++L+ LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR
Sbjct: 75 VSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPR 134
Query: 122 FVEFLMREDYPQ-LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
VEF MRE+ P+ LQ EAAWALTNIASGTS TKVV+D AVP+F++LL + S +V+EQA
Sbjct: 135 LVEF-MRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQA 193
Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPF 239
+WALGNVAGDS RD VL A+ P+L N K S++R ATWTLSN CRG KPQP +
Sbjct: 194 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDW 252
Query: 240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS 299
V ALP LA+L++S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S
Sbjct: 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 312
Query: 300 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359
V PALR VGNIVTG+D QTQ +I G LP L LL S K++IKKEACWTISNITAG
Sbjct: 313 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLP-ALRLLLSSPKENIKKEACWTISNITAG 371
Query: 360 NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIK 417
N +QIQAVIDA L+ PLV LL+ AE+ KKEA WAISNA+SGG + I+YLV +GCIK
Sbjct: 372 NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIK 431
Query: 418 PLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENL 477
PLCDL D RI+ V L+ LENILK+GEA+K ++N+ A +E+A G+EKI N
Sbjct: 432 PLCDLLEIADNRIIEVTLDALENILKMGEADKE--ARGLNINENADFIEKAGGMEKIFNC 489
Query: 478 QSHDNNEIYEKAVKILETYWLEED---DETIA 506
Q ++N++IYEKA KI+ETY+ EE+ DET+A
Sbjct: 490 QQNENDKIYEKAYKIIETYFGEEEDAVDETMA 521
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 482 bits (1241), Expect = e-136, Method: Compositional matrix adjust.
Identities = 260/429 (60%), Positives = 313/429 (72%), Gaps = 7/429 (1%)
Query: 79 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFE 137
M+ ++S QL AT +FRKLLS E +PPI+EVI + GVV RFVEFL R++ LQFE
Sbjct: 22 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 138 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 197
+AW LTNIASG S T++VI GAVPIF++LL+S +DV+EQAVWALGN+AGDS CRD
Sbjct: 82 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP-FDQVRPALPALAQLVHSN 256
VL L PLL +++ +L+M RNA W LSN CRGK PP F +V P L L+ L+ +
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H V+ PALR VGNIVTG
Sbjct: 202 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 261
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 376
DD QTQ I+ AL L L S K+SIKKEACWTISNITAGNR QIQ VIDA + L
Sbjct: 262 DDIQTQVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 320
Query: 377 VNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE 436
+++LQ AEF +KEAAWAI+NATSGG+ EQIKYLV GCIKPLCDL D +IV V L
Sbjct: 321 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 380
Query: 437 GLENILKVGEAE-KNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILET 495
GLENIL++GE E K GT +N Y L+EEA GL+KIE LQSH+N EIY+KA ++E
Sbjct: 381 GLENILRLGEQEAKRNGTG---INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 437
Query: 496 YWLEEDDET 504
Y+ ED+++
Sbjct: 438 YFGTEDEDS 446
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 482 bits (1240), Expect = e-136, Method: Compositional matrix adjust.
Identities = 260/429 (60%), Positives = 313/429 (72%), Gaps = 7/429 (1%)
Query: 79 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFE 137
M+ ++S QL AT +FRKLLS E +PPI+EVI + GVV RFVEFL R++ LQFE
Sbjct: 25 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 138 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 197
+AW LTNIASG S T++VI GAVPIF++LL+S +DV+EQAVWALGN+AGDS CRD
Sbjct: 85 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP-FDQVRPALPALAQLVHSN 256
VL L PLL +++ +L+M RNA W LSN CRGK PP F +V P L L+ L+ +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H V+ PALR VGNIVTG
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 376
DD QTQ I+ AL L L S K+SIKKEACWTISNITAGNR QIQ VIDA + L
Sbjct: 265 DDIQTQVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323
Query: 377 VNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE 436
+++LQ AEF +KEAAWAI+NATSGG+ EQIKYLV GCIKPLCDL D +IV V L
Sbjct: 324 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 383
Query: 437 GLENILKVGEAE-KNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILET 495
GLENIL++GE E K GT +N Y L+EEA GL+KIE LQSH+N EIY+KA ++E
Sbjct: 384 GLENILRLGEQEAKRNGTG---INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 440
Query: 496 YWLEEDDET 504
Y+ ED+++
Sbjct: 441 YFGTEDEDS 449
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 477 bits (1227), Expect = e-135, Method: Compositional matrix adjust.
Identities = 266/463 (57%), Positives = 325/463 (70%), Gaps = 17/463 (3%)
Query: 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-L 134
LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 60
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
Q EAAWALTNIASGTS TKVV+D AVP+F++LL + S +V+EQA+WALGNVAGDS
Sbjct: 61 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLV 253
RD VL A+ P+L N K S++R ATWTLSN CRG KPQP + V ALP LA+L+
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313
+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 373
VTG+D QTQ +I G LP L LL S K++IKKEACWTISNITAGN +QIQAVIDA L+
Sbjct: 240 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 374 GPLVNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIV 431
PLV LL+ AE KKEA WAISNA+SGG + I+YLV +GCIKPLCDL D RI+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358
Query: 432 TVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVK 491
V L+ LENILK+GEA+K ++N+ A +E+A G+EKI N Q ++N++IYEKA K
Sbjct: 359 EVTLDALENILKMGEADKE--ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 416
Query: 492 ILETYWLEED---DETIAAGDGPQPGFPYAGNEVQVPSGGFNF 531
I+ETY+ EE+ DET+A + F + N Q FNF
Sbjct: 417 IIETYFGEEEDAVDETMAPQNAGNT-FGFGSNVNQ----QFNF 454
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 476 bits (1224), Expect = e-134, Method: Compositional matrix adjust.
Identities = 260/438 (59%), Positives = 317/438 (72%), Gaps = 12/438 (2%)
Query: 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-L 134
LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 60
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
Q EAAWALTNIASGTS TKVV+D AVP+F++LL + S +V+EQA+WALGNVAGDS
Sbjct: 61 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLV 253
RD VL A+ P+L N K S++R ATWTLSN CRG KPQP + V ALP LA+L+
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313
+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 373
VTG+D QTQ +I G LP L LL S K++IKKEACWTISNITAGN +QIQAVIDA L+
Sbjct: 240 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 374 GPLVNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIV 431
PLV LL+ AE KKEA WAISNA+SGG + I+YLV +GCIKPLCDL D RI+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358
Query: 432 TVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVK 491
V L+ LENILK+GEA+K ++N+ A +E+A G+EKI N Q ++N++IYEKA K
Sbjct: 359 EVTLDALENILKMGEADKE--ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 416
Query: 492 ILETYWLEED---DETIA 506
I+ETY+ EE+ DET+A
Sbjct: 417 IIETYFGEEEDAVDETMA 434
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 473 bits (1218), Expect = e-134, Method: Compositional matrix adjust.
Identities = 254/426 (59%), Positives = 310/426 (72%), Gaps = 9/426 (2%)
Query: 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-L 134
LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 59
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
Q EAAWALTNIASGTS TKVV+D AVP+F++LL + S +V+EQA+WALGNVAGDS
Sbjct: 60 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLV 253
RD VL A+ P+L N K S++R ATWTLSN CRG KPQP + V ALP LA+L+
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313
+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 373
VTG+D QTQ +I G LP L LL S K++IKKEACWTISNITAGN +QIQAVIDA L+
Sbjct: 239 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 374 GPLVNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIV 431
PLV LL+ AE+ KKEA WAISNA+SGG + I+YLV +GCIKPLCDL D RI+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357
Query: 432 TVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVK 491
V L+ LENILK+GEA+K ++N+ A +E+A G+EKI N Q ++N++IYEKA K
Sbjct: 358 EVTLDALENILKMGEADKE--ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 415
Query: 492 ILETYW 497
I+ETY+
Sbjct: 416 IIETYF 421
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 473 bits (1216), Expect = e-133, Method: Compositional matrix adjust.
Identities = 253/426 (59%), Positives = 310/426 (72%), Gaps = 9/426 (2%)
Query: 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-L 134
LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 59
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
Q EAAWALTNIASGTS TKVV+D AVP+F++LL + S +V+EQA+WALGNVAGDS
Sbjct: 60 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLV 253
RD VL A+ P+L N K S++R ATWTLSN CRG KPQP + V ALP LA+L+
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313
+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 373
VTG+D QTQ +I G LP L LL S K++IKKEACWTISNITAGN +QIQAVIDA L+
Sbjct: 239 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 374 GPLVNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIV 431
PLV LL+ AE+ KKEA WAISNA+SGG + I+YLV +GCIKPLCDL D RI+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357
Query: 432 TVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVK 491
V L+ LENI+K+GEA+K ++N+ A +E+A G+EKI N Q ++N++IYEKA K
Sbjct: 358 EVTLDALENIIKMGEADKE--ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 415
Query: 492 ILETYW 497
I+ETY+
Sbjct: 416 IIETYF 421
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 471 bits (1213), Expect = e-133, Method: Compositional matrix adjust.
Identities = 254/428 (59%), Positives = 310/428 (72%), Gaps = 9/428 (2%)
Query: 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ 133
+ LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR VEF MRE+ P+
Sbjct: 1 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPE 59
Query: 134 -LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP 192
LQ EAAWALTNIASGTS TKVV+D AVP+F++LL + S +V+EQA+WALGNVAGDS
Sbjct: 60 MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 119
Query: 193 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQ 251
RD VL A+ P+L N K S++R ATWTLSN CRG KPQP + V ALP LA+
Sbjct: 120 DYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 178
Query: 252 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 311
L++S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VG
Sbjct: 179 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 238
Query: 312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAG 371
NIVTG+D QTQ +I G LP L LL S K++IKKEACWTISNITAGN +QIQAVIDA
Sbjct: 239 NIVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDAN 297
Query: 372 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPR 429
L+ PLV LL+ AE KKEA WAISNA+SGG + I+YLV +GCIKPLCDL D R
Sbjct: 298 LIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR 357
Query: 430 IVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 489
I+ V L+ LENILK+GEA+K ++N+ A +E+A G+EKI N Q ++N++IYEKA
Sbjct: 358 IIEVTLDALENILKMGEADKE--ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKA 415
Query: 490 VKILETYW 497
KI+ETY+
Sbjct: 416 YKIIETYF 423
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 471 bits (1213), Expect = e-133, Method: Compositional matrix adjust.
Identities = 254/428 (59%), Positives = 310/428 (72%), Gaps = 9/428 (2%)
Query: 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ 133
+ LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR VEF MRE+ P+
Sbjct: 1 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPE 59
Query: 134 -LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP 192
LQ EAAWALTNIASGTS TKVV+D AVP+F++LL + S +V+EQA+WALGNVAGDS
Sbjct: 60 MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 119
Query: 193 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQ 251
RD VL A+ P+L N K S++R ATWTLSN CRG KPQP + V ALP LA+
Sbjct: 120 DYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 178
Query: 252 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 311
L++S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VG
Sbjct: 179 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 238
Query: 312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAG 371
NIVTG+D QTQ +I G LP L LL S K++IKKEACWTISNITAGN +QIQAVIDA
Sbjct: 239 NIVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDAN 297
Query: 372 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPR 429
L+ PLV LL+ AE KKEA WAISNA+SGG + I+YLV +GCIKPLCDL D R
Sbjct: 298 LIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR 357
Query: 430 IVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 489
I+ V L+ LENILK+GEA+K ++N+ A +E+A G+EKI N Q ++N++IYEKA
Sbjct: 358 IIEVTLDALENILKMGEADKE--ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKA 415
Query: 490 VKILETYW 497
KI+ETY+
Sbjct: 416 YKIIETYF 423
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 443 bits (1140), Expect = e-125, Method: Compositional matrix adjust.
Identities = 253/544 (46%), Positives = 340/544 (62%), Gaps = 28/544 (5%)
Query: 1 MSLRPNAR-AEVRRNRYK-VAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQF 58
MS NA R NR+K D+ E RRRR + VE+RK K++E +LK+R
Sbjct: 1 MSTNENANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDA 60
Query: 59 XXXXXXSNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGV 118
+ N T S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G+
Sbjct: 61 TSPLQENRNNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGL 120
Query: 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178
+P+FV FL + D +QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + E
Sbjct: 121 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 180
Query: 179 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK 234
QAVWALGN+AG RDLV+ GA+ PLLA L LRN TWTLSN CR K
Sbjct: 181 QAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 240
Query: 235 -PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 293
P PP D V LP L +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+
Sbjct: 241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 300
Query: 294 LLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI 353
LLG ++ PALR +GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+
Sbjct: 301 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTM 359
Query: 354 SNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE 413
SNITAG +DQIQ V++ GLV LV +L A+F +K AAWAI+N TSGGT EQI YLV
Sbjct: 360 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHC 419
Query: 414 GCIKPLCDLFVCPDPRIVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAE 469
G I+PL +L D +I+ V L+ + NI K+GE EK + ++EE
Sbjct: 420 GIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECG 468
Query: 470 GLEKIENLQSHDNNEIYEKAVKILETYW-LEEDDETIAAGDGPQPGFPYAGNEVQVPS-G 527
GL+KIE LQ H+N +Y+ ++ ++E Y+ +EE+++ + GF + +VQ + G
Sbjct: 469 GLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSEGFAF---QVQDGAPG 525
Query: 528 GFNF 531
FNF
Sbjct: 526 TFNF 529
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 425 bits (1092), Expect = e-119, Method: Compositional matrix adjust.
Identities = 230/468 (49%), Positives = 308/468 (65%), Gaps = 26/468 (5%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +
Sbjct: 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
GLV LV +L A+F +KEAAWAI+N TSGGT EQI YLV G I+PL +L D +
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
I+ V L+ + NI K+GE EK + ++EE GL+KIE LQ H+N +
Sbjct: 417 IIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESV 465
Query: 486 YEKAVKILETYW-LEEDDETIAAGDGPQPGFPYAGNEVQVPS-GGFNF 531
Y+ ++ ++E Y+ +EE+++ + GF + +VQ + G FNF
Sbjct: 466 YKASLNLIEKYFSVEEEEDQNVVPETTSEGFAF---QVQDGAPGTFNF 510
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 425 bits (1092), Expect = e-119, Method: Compositional matrix adjust.
Identities = 230/468 (49%), Positives = 308/468 (65%), Gaps = 26/468 (5%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +
Sbjct: 44 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 103
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 104 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 163
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L
Sbjct: 164 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 223
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR
Sbjct: 224 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 283
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 284 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 342
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
GLV LV +L A+F +KEAAWAI+N TSGGT EQI YLV G I+PL +L D +
Sbjct: 343 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 402
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
I+ V L+ + NI K+GE EK + ++EE GL+KIE LQ H+N +
Sbjct: 403 IIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESV 451
Query: 486 YEKAVKILETYW-LEEDDETIAAGDGPQPGFPYAGNEVQVPS-GGFNF 531
Y+ ++ ++E Y+ +EE+++ + GF + +VQ + G FNF
Sbjct: 452 YKASLNLIEKYFSVEEEEDQNVVPETTSEGFAF---QVQDGAPGTFNF 496
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 424 bits (1090), Expect = e-119, Method: Compositional matrix adjust.
Identities = 230/468 (49%), Positives = 308/468 (65%), Gaps = 26/468 (5%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +
Sbjct: 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
GLV LV +L A+F +KEAAWAI+N TSGGT EQI YLV G I+PL +L D +
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
I+ V L+ + NI K+GE EK + ++EE GL+KIE LQ H+N +
Sbjct: 417 IIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESV 465
Query: 486 YEKAVKILETYW-LEEDDETIAAGDGPQPGFPYAGNEVQVPS-GGFNF 531
Y+ ++ ++E Y+ +EE+++ + GF + +VQ + G FNF
Sbjct: 466 YKASLNLIEKYFSVEEEEDQNVVPETTSEGFAF---QVQDGAPGTFNF 510
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 424 bits (1090), Expect = e-119, Method: Compositional matrix adjust.
Identities = 230/468 (49%), Positives = 308/468 (65%), Gaps = 26/468 (5%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +
Sbjct: 14 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 74 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 193
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR
Sbjct: 194 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 253
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 254 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 312
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
GLV LV +L A+F +KEAAWAI+N TSGGT EQI YLV G I+PL +L D +
Sbjct: 313 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 372
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
I+ V L+ + NI K+GE EK + ++EE GL+KIE LQ H+N +
Sbjct: 373 IIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESV 421
Query: 486 YEKAVKILETYW-LEEDDETIAAGDGPQPGFPYAGNEVQVPS-GGFNF 531
Y+ ++ ++E Y+ +EE+++ + GF + +VQ + G FNF
Sbjct: 422 YKASLNLIEKYFSVEEEEDQNVVPETTSEGFAF---QVQDGAPGTFNF 466
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 424 bits (1089), Expect = e-119, Method: Compositional matrix adjust.
Identities = 230/468 (49%), Positives = 308/468 (65%), Gaps = 26/468 (5%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +
Sbjct: 8 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
GLV LV +L A+F +KEAAWAI+N TSGGT EQI YLV G I+PL +L D +
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 366
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
I+ V L+ + NI K+GE EK + ++EE GL+KIE LQ H+N +
Sbjct: 367 IIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESV 415
Query: 486 YEKAVKILETYW-LEEDDETIAAGDGPQPGFPYAGNEVQVPS-GGFNF 531
Y+ ++ ++E Y+ +EE+++ + GF + +VQ + G FNF
Sbjct: 416 YKASLNLIEKYFSVEEEEDQNVVPETTSEGFAF---QVQDGAPGTFNF 460
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 422 bits (1085), Expect = e-118, Method: Compositional matrix adjust.
Identities = 224/453 (49%), Positives = 300/453 (66%), Gaps = 22/453 (4%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +
Sbjct: 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
GLV LV +L A+F +KEAAWAI+N TSGGT EQI YLV G I+PL +L D +
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
I+ V L+ + NI K+GE EK + ++EE GL+KIE LQ H+N +
Sbjct: 417 IIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESV 465
Query: 486 YEKAVKILETYW-LEEDDETIAAGDGPQPGFPY 517
Y+ ++ ++E Y+ +EE+++ + GF +
Sbjct: 466 YKASLNLIEKYFSVEEEEDQNVVPETTSEGFAF 498
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 419 bits (1078), Expect = e-117, Method: Compositional matrix adjust.
Identities = 230/471 (48%), Positives = 304/471 (64%), Gaps = 32/471 (6%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S + QL+AT RKLLS E+ PPI+ +I++G++P+FV FL R D +
Sbjct: 9 SVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPI 68
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 69 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVF 128
Query: 195 RDLVLSQGALIPLLAQLNERAKLSM----LRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L S+ LRN TWTLSN CR K P PP D V LP L
Sbjct: 129 RDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTL 188
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H +D EVL D CWA+SYL+DG N++I V++ GV P+LV+LLG ++ PALR
Sbjct: 189 VRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRA 248
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 249 IGNIVTGTDEQTQVVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 307
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
GLV LV++L A+F +KEA WA++N TSGGT EQI YLV G I+PL +L D +
Sbjct: 308 HGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTK 367
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
I+ V L+ + NI K+GE EK + ++EE GL+KIE LQ+H+N +
Sbjct: 368 IILVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQNHENESV 416
Query: 486 YEKAVKILETYWL--EEDDETIAAGDGPQPGFPYAGNEVQVPSGG---FNF 531
Y+ ++ ++E Y+ EE+D+ + P G QV G FNF
Sbjct: 417 YKASLSLIEKYFSVEEEEDQNVV------PETTSEGYTFQVQDGAPGTFNF 461
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 419 bits (1078), Expect = e-117, Method: Compositional matrix adjust.
Identities = 220/432 (50%), Positives = 290/432 (67%), Gaps = 21/432 (4%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +
Sbjct: 42 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 101
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 102 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 161
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L
Sbjct: 162 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 221
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR
Sbjct: 222 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 281
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 282 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 340
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
GLV LV +L A+F +KEAAWAI+N TSGGT EQI YLV G I+PL +L D +
Sbjct: 341 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 400
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
I+ V L+ + NI K+GE EK + ++EE GL+KIE LQ H+N +
Sbjct: 401 IIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESV 449
Query: 486 YEKAVKILETYW 497
Y+ ++ ++E Y+
Sbjct: 450 YKASLNLIEKYF 461
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 419 bits (1077), Expect = e-117, Method: Compositional matrix adjust.
Identities = 220/432 (50%), Positives = 290/432 (67%), Gaps = 21/432 (4%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +
Sbjct: 34 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 93
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 94 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 153
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L
Sbjct: 154 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 213
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR
Sbjct: 214 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 273
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 274 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 332
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
GLV LV +L A+F +KEAAWAI+N TSGGT EQI YLV G I+PL +L D +
Sbjct: 333 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 392
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
I+ V L+ + NI K+GE EK + ++EE GL+KIE LQ H+N +
Sbjct: 393 IIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESV 441
Query: 486 YEKAVKILETYW 497
Y+ ++ ++E Y+
Sbjct: 442 YKASLNLIEKYF 453
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 419 bits (1076), Expect = e-117, Method: Compositional matrix adjust.
Identities = 220/432 (50%), Positives = 290/432 (67%), Gaps = 21/432 (4%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +
Sbjct: 8 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
GLV LV +L A+F +KEAAWAI+N TSGGT EQI YLV G I+PL +L D +
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 366
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
I+ V L+ + NI K+GE EK + ++EE GL+KIE LQ H+N +
Sbjct: 367 IIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESV 415
Query: 486 YEKAVKILETYW 497
Y+ ++ ++E Y+
Sbjct: 416 YKASLNLIEKYF 427
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 418 bits (1075), Expect = e-117, Method: Compositional matrix adjust.
Identities = 220/432 (50%), Positives = 290/432 (67%), Gaps = 21/432 (4%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +
Sbjct: 7 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 67 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 186
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 305
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
GLV LV +L A+F +KEAAWAI+N TSGGT EQI YLV G I+PL +L D +
Sbjct: 306 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 365
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
I+ V L+ + NI K+GE EK + ++EE GL+KIE LQ H+N +
Sbjct: 366 IIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESV 414
Query: 486 YEKAVKILETYW 497
Y+ ++ ++E Y+
Sbjct: 415 YKASLNLIEKYF 426
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 418 bits (1075), Expect = e-117, Method: Compositional matrix adjust.
Identities = 220/432 (50%), Positives = 290/432 (67%), Gaps = 21/432 (4%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +
Sbjct: 8 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
GLV LV +L A+F +KEAAWAI+N TSGGT EQI YLV G I+PL +L D +
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 366
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
I+ V L+ + NI K+GE EK + ++EE GL+KIE LQ H+N +
Sbjct: 367 IIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESV 415
Query: 486 YEKAVKILETYW 497
Y+ ++ ++E Y+
Sbjct: 416 YKASLNLIEKYF 427
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 418 bits (1075), Expect = e-117, Method: Compositional matrix adjust.
Identities = 220/432 (50%), Positives = 290/432 (67%), Gaps = 21/432 (4%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +
Sbjct: 7 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 67 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 186
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 305
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
GLV LV +L A+F +KEAAWAI+N TSGGT EQI YLV G I+PL +L D +
Sbjct: 306 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 365
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
I+ V L+ + NI K+GE EK + ++EE GL+KIE LQ H+N +
Sbjct: 366 IIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESV 414
Query: 486 YEKAVKILETYW 497
Y+ ++ ++E Y+
Sbjct: 415 YKASLNLIEKYF 426
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 418 bits (1075), Expect = e-117, Method: Compositional matrix adjust.
Identities = 220/432 (50%), Positives = 290/432 (67%), Gaps = 21/432 (4%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +
Sbjct: 3 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 63 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 182
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 301
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
GLV LV +L A+F +KEAAWAI+N TSGGT EQI YLV G I+PL +L D +
Sbjct: 302 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 361
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
I+ V L+ + NI K+GE EK + ++EE GL+KIE LQ H+N +
Sbjct: 362 IIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESV 410
Query: 486 YEKAVKILETYW 497
Y+ ++ ++E Y+
Sbjct: 411 YKASLNLIEKYF 422
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 220/432 (50%), Positives = 290/432 (67%), Gaps = 21/432 (4%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +
Sbjct: 3 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 63 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 182
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 301
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
GLV LV +L A+F +KEAAWAI+N TSGGT EQI YLV G I+PL +L D +
Sbjct: 302 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 361
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
I+ V L+ + NI K+GE EK + ++EE GL+KIE LQ H+N +
Sbjct: 362 IIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESV 410
Query: 486 YEKAVKILETYW 497
Y+ ++ ++E Y+
Sbjct: 411 YKASLNLIEKYF 422
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/250 (41%), Positives = 146/250 (58%), Gaps = 17/250 (6%)
Query: 246 LPALAQLVHSNDEEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 304
LP + Q ++S+D + A S LSDG N++IQAVI+AG P LV+LL P+ +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364
AL + NI +G + Q Q +I GALP L+ LL+ S + I +EA W +SNI +G +QI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 365 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV 424
QAVIDAG + LV LL + I +EA WA+SN SGG +EQI+ ++ G + L L
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLS 190
Query: 425 CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNE 484
P+ +I+ L L NI G N+ Q V+EA LEK+E LQSH+N +
Sbjct: 191 SPNEQILQEALWALSNIASGG-------------NEQKQAVKEAGALEKLEQLQSHENEK 237
Query: 485 IYEKAVKILE 494
I ++A + LE
Sbjct: 238 IQKEAQEALE 247
Score = 149 bits (376), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/225 (41%), Positives = 132/225 (58%), Gaps = 8/225 (3%)
Query: 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
LP M + SDD QL AT +F ++LS + + I+ VI +G +P V+ L + LQ
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195
EA WAL+NIASG +E + VID GA+P V+LL+SP++ + ++A+WAL N+A
Sbjct: 73 -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG---KPQPPFDQVRPALPALAQL 252
V+ GAL P L QL +L+ A W LSN G + Q D ALPAL QL
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQL 188
Query: 253 VHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH 297
+ S +E++L +A WALS ++ G N++ QAV EAG +L +L H
Sbjct: 189 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 233
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 128/228 (56%), Gaps = 9/228 (3%)
Query: 173 SDDVREQ--AVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 230
SDD++EQ A + D V+ GAL P L QL +L+ A W LSN
Sbjct: 23 SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNI 81
Query: 231 CRG---KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV 287
G + Q D ALPAL QL+ S +E++L +A WALS ++ G N++IQAVI+AG
Sbjct: 82 ASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 139
Query: 288 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKK 347
P LV+LL P+ +L AL + NI +G + Q Q +I GALP L+ LL+ S + I +
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 198
Query: 348 EACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAI 395
EA W +SNI +G +Q QAV +AG + L L + I+KEA A+
Sbjct: 199 EALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
+LPA+V + S + + EA + S + I+ VI +G +P V+ L + L
Sbjct: 139 ALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQIL 197
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWAL 184
Q EA WAL+NIASG +E + V + GA+ +L + ++ ++++A AL
Sbjct: 198 Q-EALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 141 bits (356), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 117/197 (59%), Gaps = 4/197 (2%)
Query: 246 LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIP 305
LP + Q ++S D++ L A LS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 306 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ 365
AL + NI +G + Q Q +I GALP L+ LL+ S + I +EA W +SNI +G +QIQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 132
Query: 366 AVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKP-LCDLFV 424
AVIDAG + LV LL + I +EA WA+SN SGG + K V+E +P L L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGAEPALEQLQS 190
Query: 425 CPDPRIVTVCLEGLENI 441
P+ +I E LE I
Sbjct: 191 SPNEKIQKEAQEALEKI 207
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 96/151 (63%), Gaps = 1/151 (0%)
Query: 245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 304
ALPAL QL+ S +E++L +A WALS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364
AL + NI +G + Q Q +I GALP L+ LL+ S + I +EA W +SNI +G +Q
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQK 173
Query: 365 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAI 395
QAV +AG L L + I+KEA A+
Sbjct: 174 QAVKEAGAEPALEQLQSSPNEKIQKEAQEAL 204
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 106/199 (53%), Gaps = 8/199 (4%)
Query: 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIER--SPPIEEVIQSGVVPRFVEFLMREDYPQ 133
LP MV + S D Q E + RKL I + I+ VI +G +P V+ L +
Sbjct: 14 LPQMVQQLNSPD---QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR 193
LQ EA WAL+NIASG +E + VID GA+P V+LL+SP++ + ++A+WAL N+A
Sbjct: 71 LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 194 CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR-GKPQPPFDQVRPALPALAQL 252
V+ GAL P L QL +L+ A W LSN G Q + A PAL QL
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQL 188
Query: 253 VHSNDEEVLTDACWALSYL 271
S +E++ +A AL +
Sbjct: 189 QSSPNEKIQKEAQEALEKI 207
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 117/196 (59%), Gaps = 2/196 (1%)
Query: 246 LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIP 305
LP + Q ++S D++ L A LS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 306 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ 365
AL + NI +G + Q Q +I GALP L+ LL+ S + I +EA W +SNI +G +QIQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 132
Query: 366 AVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC 425
AVIDAG + LV LL + I +EA WA+SN SGG +EQ + + G ++ L L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSH 191
Query: 426 PDPRIVTVCLEGLENI 441
+ +I E LE +
Sbjct: 192 ENEKIQKEAQEALEKL 207
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 117/209 (55%), Gaps = 15/209 (7%)
Query: 288 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKK 347
P++V+ L P L ALR + I +G + Q Q +I GALP L+ LL+ S + I +
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 348 EACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQI 407
EA W +SNI +G +QIQAVIDAG + LV LL + I +EA WA+SN SGG +EQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 408 KYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEE 467
+ ++ G + L L P+ +I+ L L NI G N+ Q V+E
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKE 178
Query: 468 AEGLEKIENLQSHDNNEIYEKAVKILETY 496
A LEK+E LQSH+N +I ++A + LE
Sbjct: 179 AGALEKLEQLQSHENEKIQKEAQEALEKL 207
Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 97/151 (64%), Gaps = 1/151 (0%)
Query: 245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 304
ALPAL QL+ S +E++L +A WALS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364
AL + NI +G + Q Q +I GALP L+ LL+ S + I +EA W +SNI +G +Q
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQK 173
Query: 365 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAI 395
QAV +AG + L L + I+KEA A+
Sbjct: 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 104/199 (52%), Gaps = 8/199 (4%)
Query: 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIER--SPPIEEVIQSGVVPRFVEFLMREDYPQ 133
LP MV + S D Q E + RKL I + I+ VI +G +P V+ L +
Sbjct: 14 LPQMVQQLNSPD---QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR 193
LQ EA WAL+NIASG +E + VID GA+P V+LL+SP++ + ++A+WAL N+A
Sbjct: 71 LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 194 CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR-GKPQPPFDQVRPALPALAQL 252
V+ GAL P L QL +L+ A W LSN G Q + AL L QL
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 188
Query: 253 VHSNDEEVLTDACWALSYL 271
+E++ +A AL L
Sbjct: 189 QSHENEKIQKEAQEALEKL 207
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 116/197 (58%), Gaps = 4/197 (2%)
Query: 246 LPALAQLVHSNDEEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 304
LP + Q ++S+D + A S LSDG N++IQAVI+AG P LV+LL P+ +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364
AL + NI +G + Q Q +I GALP L+ LL+ S + I +EA W +SNI +G +QI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 365 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV 424
QAVIDAG + LV LL + I +EA WA+SN SGG +EQ + + G ++ L L
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 190
Query: 425 CPDPRIVTVCLEGLENI 441
+ +I E LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 113/207 (54%), Gaps = 15/207 (7%)
Query: 288 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKK 347
P++ + L + A R I++ + Q Q +I GALP L+ LL+ S + I +
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 348 EACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQI 407
EA W +SNI +G +QIQAVIDAG + LV LL + I +EA WA+SN SGG +EQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 408 KYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEE 467
+ ++ G + L L P+ +I+ L L NI G N+ Q V+E
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKE 178
Query: 468 AEGLEKIENLQSHDNNEIYEKAVKILE 494
A LEK+E LQSH+N +I ++A + LE
Sbjct: 179 AGALEKLEQLQSHENEKIQKEAQEALE 205
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 97/151 (64%), Gaps = 1/151 (0%)
Query: 245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 304
ALPAL QL+ S +E++L +A WALS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364
AL + NI +G + Q Q +I GALP L+ LL+ S + I +EA W +SNI +G +Q
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQK 173
Query: 365 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAI 395
QAV +AG + L L + I+KEA A+
Sbjct: 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 108/197 (54%), Gaps = 4/197 (2%)
Query: 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
LP M + SDD QL AT +F ++LS + + I+ VI +G +P V+ L + LQ
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195
EA WAL+NIASG +E + VID GA+P V+LL+SP++ + ++A+WAL N+A
Sbjct: 73 -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR-GKPQPPFDQVRPALPALAQLVH 254
V+ GAL P L QL +L+ A W LSN G Q + AL L QL
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190
Query: 255 SNDEEVLTDACWALSYL 271
+E++ +A AL L
Sbjct: 191 HENEKIQKEAQEALEKL 207
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 117/223 (52%), Gaps = 5/223 (2%)
Query: 221 RNATWTLSNFCRGKPQPPFDQVRPA--LPALAQLVHSNDEEVLTDACWALSYLSDGTNDK 278
+ A L+ G P + A + L +L+ S D EV +A AL+ ++ G ++
Sbjct: 20 KEAARDLAEIASG-PASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 78
Query: 279 IQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT 338
I+A+++AG LV+LL V A R + NI +G D + I+ G + L+ LLT
Sbjct: 79 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 138
Query: 339 HSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA 398
+ + ++KEA ++NI +G + I+A++DAG V LV LL + + +++KEAA A++N
Sbjct: 139 STDSE-VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 197
Query: 399 TSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENI 441
SG T IK +V G ++ L L D + LENI
Sbjct: 198 ASGPTS-AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 130/255 (50%), Gaps = 19/255 (7%)
Query: 249 LAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALR 308
L +L+ S D E +A L+ ++ G I+A+++AG LV+LL V A R
Sbjct: 7 LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 309 TVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI 368
+ NI +G D + I+ G + L+ LLT + + ++KEA ++NI +G + I+A++
Sbjct: 67 ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSE-VQKEAARALANIASGPDEAIKAIV 125
Query: 369 DAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDP 428
DAG V LV LL + + +++KEAA A++N S G E IK +V G ++ L L D
Sbjct: 126 DAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTDS 184
Query: 429 RIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEK 488
+ L NI A+ + +V +A G+E ++ L + ++E+ ++
Sbjct: 185 EVQKEAARALANI------------ASGPTSAIKAIV-DAGGVEVLQKLLTSTDSEVQKE 231
Query: 489 AVKILETY----WLE 499
A + LE WLE
Sbjct: 232 AQRALENIKSGGWLE 246
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 123/278 (44%), Gaps = 49/278 (17%)
Query: 85 SDDSSLQLEATTQFRKLLSIERSPP--IEEVIQSGVVPRFVEFLMREDYPQLQFEAAWAL 142
S DS Q EA R L I P I+ ++ +G V V+ L D ++Q EAA AL
Sbjct: 13 STDSETQKEAA---RDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARAL 68
Query: 143 TNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG 202
NIASG E K ++D G V + VKLL S +V+++A AL N+A ++ G
Sbjct: 69 ANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAG 128
Query: 203 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLT 262
+ L+ +L+ S D EV
Sbjct: 129 GVEVLV------------------------------------------KLLTSTDSEVQK 146
Query: 263 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ 322
+A AL+ ++ G ++ I+A+++AG LV+LL V A R + NI +G +
Sbjct: 147 EAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIK 206
Query: 323 CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
I+ G + L LLT + + ++KEA + NI +G
Sbjct: 207 AIVDAGGVEVLQKLLTSTDSE-VQKEAQRALENIKSGG 243
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 9/200 (4%)
Query: 255 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 314
+ND E L LS + + A+ ++G P LV +LG P SVL A+ T+ N++
Sbjct: 204 TNDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLL 262
Query: 315 TGDDFQTQCIITYGALPYLLGLLTHSHKKSIK-KEACWTISNITAGNRDQIQAVIDAGLV 373
+ + G L ++ LL ++ K + C I + GN++ ++ +G
Sbjct: 263 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILASGGP 320
Query: 374 GPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPDPRIV 431
LVN+++ ++ + W S +V G ++ L P R+V
Sbjct: 321 QALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV 377
Query: 432 TVCLEGLENILKVGEAEKNM 451
CL L N+ ++ M
Sbjct: 378 QNCLWTLRNLSDAATKQEGM 397
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQF----------EAAWALTNIASGTSENTK 154
+ G +PR V+ L+R Q QF EA +I + N
Sbjct: 528 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRI 587
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 588 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 623
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 105/250 (42%), Gaps = 25/250 (10%)
Query: 113 VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP 172
++ SG V + Y +L + + L + S S N +++ G + L P
Sbjct: 314 ILASGGPQALVNIMRTYTYEKLLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDP 372
Query: 173 SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF-C 231
S + + +W L N++ + + + G L+ LL ++++ A LSN C
Sbjct: 373 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTC 428
Query: 232 RG-KPQPPFDQVRPALPALAQLVHSNDEEVLTD-ACWALSYLSDGTNDKIQAV----IEA 285
K + QV + ++ + D E +T+ A AL +L+ D A +
Sbjct: 429 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHY 488
Query: 286 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITY------GALPYLLGLLTH 339
G+ P +V+LL PS LI A TVG I C + GA+P L+ LL
Sbjct: 489 GL-PVVVKLLHPPSHWPLIKA--TVGLIRN----LALCPANHAPLREQGAIPRLVQLLVR 541
Query: 340 SHKKSIKKEA 349
+H+ + ++ +
Sbjct: 542 AHQDTQRRTS 551
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 67 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 369
N++ + + G L ++ LL ++ K + C I + GN++ ++
Sbjct: 123 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 180
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 427
+G LVN+++ ++ + W S +V G ++ L P
Sbjct: 181 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 237
Query: 428 PRIVTVCLEGLENILKVGEAEKNM 451
R+V CL L N+ ++ M
Sbjct: 238 QRLVQNCLWTLRNLSDAATKQEGM 261
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 11/266 (4%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 78 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 136
Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 256
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 137 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 195
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 196 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 254
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 376
Q G L LLG S ++ A +SN+T N V G + L
Sbjct: 255 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 310
Query: 377 VNLLQNA--EFDIKKEAAWAISNATS 400
V + A DI + A A+ + TS
Sbjct: 311 VRTVLRAGDREDITEPAICALRHLTS 336
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 154
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 392 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 451
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 452 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 68 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 123
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 369
N++ + + G L ++ LL ++ K + C I + GN++ ++
Sbjct: 124 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 181
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 427
+G LVN+++ ++ + W S +V G ++ L P
Sbjct: 182 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 238
Query: 428 PRIVTVCLEGLENILKVGEAEKNM 451
R+V CL L N+ ++ M
Sbjct: 239 QRLVQNCLWTLRNLSDAATKQEGM 262
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 11/266 (4%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 79 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 137
Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 256
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 138 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 196
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 197 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 255
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 376
Q G L LLG S ++ A +SN+T N V G + L
Sbjct: 256 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 311
Query: 377 VNLLQNA--EFDIKKEAAWAISNATS 400
V + A DI + A A+ + TS
Sbjct: 312 VRTVLRAGDREDITEPAICALRHLTS 337
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 154
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 393 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 452
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 453 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 105/251 (41%), Gaps = 27/251 (10%)
Query: 113 VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP 172
++ SG V + Y +L + + L + S S N +++ G + L P
Sbjct: 179 ILASGGPQALVNIMRTYTYEKLLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDP 237
Query: 173 SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF-C 231
S + + +W L N++ + + + G L+ LL ++++ A LSN C
Sbjct: 238 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTC 293
Query: 232 RG-KPQPPFDQVRPALPALAQLVHSNDEEVLTD-ACWALSYLSDGTNDKIQAV----IEA 285
K + QV + ++ + D E +T+ A AL +L+ + A +
Sbjct: 294 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 353
Query: 286 GVCPRLVELLGHPSPSVLIPALRTVGNI-------VTGDDFQTQCIITYGALPYLLGLLT 338
G+ P +V+LL PS LI A TVG I + Q GA+P L+ LL
Sbjct: 354 GL-PVVVKLLHPPSHWPLIKA--TVGLIRNLALCPANHAPLREQ-----GAIPRLVQLLV 405
Query: 339 HSHKKSIKKEA 349
+H+ + ++ +
Sbjct: 406 RAHQDTQRRTS 416
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 18/236 (7%)
Query: 176 VREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAK------LSMLRNATWTLS 228
+R A AL N+ GD L +G + L+AQL ++ S+LRN +W +
Sbjct: 102 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-A 160
Query: 229 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 288
+ K V+ + ++ + + + A W LS + T +K G
Sbjct: 161 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS--AHCTENKADICAVDGAL 218
Query: 289 PRLVELLGHPSPSVLIPA-------LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH 341
LV L + S + + LR V +++ ++ Q + L LL L SH
Sbjct: 219 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SH 277
Query: 342 KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 397
+I AC T+ N++A N +A+ D G V L NL+ + I +A A+ N
Sbjct: 278 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 333
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 18/236 (7%)
Query: 176 VREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAK------LSMLRNATWTLS 228
+R A AL N+ GD L +G + L+AQL ++ S+LRN +W +
Sbjct: 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-A 158
Query: 229 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 288
+ K V+ + ++ + + + A W LS + T +K G
Sbjct: 159 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS--AHCTENKADICAVDGAL 216
Query: 289 PRLVELLGHPSPSVLIPA-------LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH 341
LV L + S + + LR V +++ ++ Q + L LL L SH
Sbjct: 217 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SH 275
Query: 342 KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 397
+I AC T+ N++A N +A+ D G V L NL+ + I +A A+ N
Sbjct: 276 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 331
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 18/236 (7%)
Query: 176 VREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAK------LSMLRNATWTLS 228
+R A AL N+ GD L +G + L+AQL ++ S+LRN +W +
Sbjct: 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-A 274
Query: 229 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 288
+ K V+ + ++ + + + A W LS + T +K G
Sbjct: 275 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS--AHCTENKADICAVDGAL 332
Query: 289 PRLVELLGHPSPSVLIPA-------LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH 341
LV L + S + + LR V +++ ++ Q + L LL L SH
Sbjct: 333 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SH 391
Query: 342 KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 397
+I AC T+ N++A N +A+ D G V L NL+ + I +A A+ N
Sbjct: 392 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 447
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 73 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 128
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 369
N++ + + G L ++ LL ++ K + C I + GN++ ++
Sbjct: 129 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 186
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 427
+G LVN+++ ++ + W S +V G ++ L P
Sbjct: 187 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 243
Query: 428 PRIVTVCLEGLENILKVGEAEKNM 451
R+V CL L N+ ++ M
Sbjct: 244 QRLVQNCLWTLRNLSDAATKQEGM 267
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 11/266 (4%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 84 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 142
Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 256
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 143 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 201
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 202 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 260
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 376
Q G L LLG S ++ A +SN+T N V G + L
Sbjct: 261 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 316
Query: 377 VNLLQNA--EFDIKKEAAWAISNATS 400
V + A DI + A A+ + TS
Sbjct: 317 VRTVLRAGDREDITEPAICALRHLTS 342
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 154
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 398 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 457
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 458 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 493
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 71 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 126
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 369
N++ + + G L ++ LL ++ K + C I + GN++ ++
Sbjct: 127 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 184
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 427
+G LVN+++ ++ + W S +V G ++ L P
Sbjct: 185 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 241
Query: 428 PRIVTVCLEGLENILKVGEAEKNM 451
R+V CL L N+ ++ M
Sbjct: 242 QRLVQNCLWTLRNLSDAATKQEGM 265
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 11/266 (4%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 82 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 140
Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 256
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 141 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 199
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 200 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 258
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 376
Q G L LLG S ++ A +SN+T N V G + L
Sbjct: 259 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 314
Query: 377 VNLLQNA--EFDIKKEAAWAISNATS 400
V + A DI + A A+ + TS
Sbjct: 315 VRTVLRAGDREDITEPAICALRHLTS 340
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 154
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 396 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 455
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 456 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 491
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 74 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 129
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 369
N++ + + G L ++ LL ++ K + C I + GN++ ++
Sbjct: 130 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 187
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 427
+G LVN+++ ++ + W S +V G ++ L P
Sbjct: 188 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 244
Query: 428 PRIVTVCLEGLENILKVGEAEKNM 451
R+V CL L N+ ++ M
Sbjct: 245 QRLVQNCLWTLRNLSDAATKQEGM 268
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 11/266 (4%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 85 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 143
Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 256
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 144 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 202
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 203 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 261
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 376
Q G L LLG S ++ A +SN+T N V G + L
Sbjct: 262 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 317
Query: 377 VNLLQNA--EFDIKKEAAWAISNATS 400
V + A DI + A A+ + TS
Sbjct: 318 VRTVLRAGDREDITEPAICALRHLTS 343
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 154
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 399 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 458
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 459 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 494
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 99/239 (41%), Gaps = 18/239 (7%)
Query: 173 SDDVREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAK------LSMLRNATW 225
S +R A AL N+ GD L +G + L+AQL ++ S+LRN +W
Sbjct: 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSW 156
Query: 226 TLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA 285
++ K V+ + ++ + + + A W LS + T +K
Sbjct: 157 R-ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS--AHCTENKADICAVD 213
Query: 286 GVCPRLVELLGHPSPSVLIPA-------LRTVGNIVTGDDFQTQCIITYGALPYLLGLLT 338
G LV L + S + + LR V +++ ++ Q + L LL L
Sbjct: 214 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK 273
Query: 339 HSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 397
SH +I AC T+ N++A N +A+ D G V L NL+ + I +A A+ N
Sbjct: 274 -SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 331
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 68 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 123
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 369
N++ + + G L ++ LL ++ K + C I + GN++ ++
Sbjct: 124 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 181
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 427
+G LVN+++ ++ + W S +V G ++ L P
Sbjct: 182 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 238
Query: 428 PRIVTVCLEGLENILKVGEAEKNM 451
R+V CL L N+ ++ M
Sbjct: 239 QRLVQNCLWTLRNLSDAATKQEGM 262
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 11/266 (4%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 79 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 137
Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 256
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 138 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 196
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 197 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 255
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 376
Q G L LLG S ++ A +SN+T N V G + L
Sbjct: 256 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 311
Query: 377 VNLLQNA--EFDIKKEAAWAISNATS 400
V + A DI + A A+ + TS
Sbjct: 312 VRTVLRAGDREDITEPAICALRHLTS 337
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 154
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 393 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 452
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 453 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 57 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 112
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 369
N++ + + G L ++ LL ++ K + C I + GN++ ++
Sbjct: 113 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 170
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 427
+G LVN+++ ++ + W S +V G ++ L P
Sbjct: 171 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 227
Query: 428 PRIVTVCLEGLENILKVGEAEKNM 451
R+V CL L N+ ++ M
Sbjct: 228 QRLVQNCLWTLRNLSDAATKQEGM 251
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 11/266 (4%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 68 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 126
Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 256
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 127 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 185
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 186 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 244
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 376
Q G L LLG S ++ A +SN+T N V G + L
Sbjct: 245 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 300
Query: 377 VNLLQNA--EFDIKKEAAWAISNATS 400
V + A DI + A A+ + TS
Sbjct: 301 VRTVLRAGDREDITEPAICALRHLTS 326
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 154
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 382 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 441
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 442 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 477
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 72 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 127
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 369
N++ + + G L ++ LL ++ K + C I + GN++ ++
Sbjct: 128 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 185
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 427
+G LVN+++ ++ + W S +V G ++ L P
Sbjct: 186 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 242
Query: 428 PRIVTVCLEGLENILKVGEAEKNM 451
R+V CL L N+ ++ M
Sbjct: 243 QRLVQNCLWTLRNLSDAATKQEGM 266
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 11/266 (4%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 83 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 141
Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 256
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 142 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 200
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 201 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 259
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 376
Q G L LLG S ++ A +SN+T N V G + L
Sbjct: 260 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 315
Query: 377 VNLLQNA--EFDIKKEAAWAISNATS 400
V + A DI + A A+ + TS
Sbjct: 316 VRTVLRAGDREDITEPAICALRHLTS 341
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 154
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 397 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 456
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 457 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 55 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 110
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 369
N++ + + G L ++ LL ++ K + C I + GN++ ++
Sbjct: 111 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 168
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 427
+G LVN+++ ++ + W S +V G ++ L P
Sbjct: 169 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 225
Query: 428 PRIVTVCLEGLENILKVGEAEKNM 451
R+V CL L N+ ++ M
Sbjct: 226 QRLVQNCLWTLRNLSDAATKQEGM 249
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 11/266 (4%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 66 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 124
Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 256
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 125 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 183
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 184 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 242
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 376
Q G L LLG S ++ A +SN+T N V G + L
Sbjct: 243 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 298
Query: 377 VNLLQNA--EFDIKKEAAWAISNATS 400
V + A DI + A A+ + TS
Sbjct: 299 VRTVLRAGDREDITEPAICALRHLTS 324
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 154
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 380 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 439
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 440 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 70 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 125
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 369
N++ + + G L ++ LL ++ K + C I + GN++ ++
Sbjct: 126 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 183
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 427
+G LVN+++ ++ + W S +V G ++ L P
Sbjct: 184 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 240
Query: 428 PRIVTVCLEGLENILKVGEAEKNM 451
R+V CL L N+ ++ M
Sbjct: 241 QRLVQNCLWTLRNLSDAATKQEGM 264
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 11/266 (4%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 81 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 139
Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 256
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 140 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 198
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 199 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 257
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 376
Q G L LLG S ++ A +SN+T N V G + L
Sbjct: 258 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 313
Query: 377 VNLLQNA--EFDIKKEAAWAISNATS 400
V + A DI + A A+ + TS
Sbjct: 314 VRTVLRAGDREDITEPAICALRHLTS 339
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 154
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 395 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 454
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 455 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 72 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 127
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 369
N++ + + G L ++ LL ++ K + C I + GN++ ++
Sbjct: 128 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 185
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 427
+G LVN+++ ++ + W S +V G ++ L P
Sbjct: 186 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 242
Query: 428 PRIVTVCLEGLENILKVGEAEKNM 451
R+V CL L N+ ++ M
Sbjct: 243 QRLVQNCLWTLRNLSDAATKQEGM 266
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 11/266 (4%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 83 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 141
Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 256
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 142 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 200
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 201 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 259
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 376
Q G L LLG S ++ A +SN+T N V G + L
Sbjct: 260 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 315
Query: 377 VNLLQNA--EFDIKKEAAWAISNATS 400
V + A DI + A A+ + TS
Sbjct: 316 VRTVLRAGDREDITEPAICALRHLTS 341
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 154
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 397 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 456
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 457 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 55 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 110
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 369
N++ + + G L ++ LL ++ K + C I + GN++ ++
Sbjct: 111 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 168
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 427
+G LVN+++ ++ + W S +V G ++ L P
Sbjct: 169 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 225
Query: 428 PRIVTVCLEGLENILKVGEAEKNM 451
R+V CL L N+ ++ M
Sbjct: 226 QRLVQNCLWTLRNLSDAATKQEGM 249
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 11/266 (4%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 66 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 124
Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 256
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 125 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 183
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 184 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 242
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 376
Q G L LLG S ++ A +SN+T N V G + L
Sbjct: 243 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 298
Query: 377 VNLLQNA--EFDIKKEAAWAISNATS 400
V + A DI + A A+ + TS
Sbjct: 299 VRTVLRAGDREDITEPAICALRHLTS 324
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 154
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 380 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 439
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 440 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 59 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 114
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 369
N++ + + G L ++ LL ++ K + C I + GN++ ++
Sbjct: 115 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 172
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 427
+G LVN+++ ++ + W S +V G ++ L P
Sbjct: 173 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 229
Query: 428 PRIVTVCLEGLENILKVGEAEKNM 451
R+V CL L N+ ++ M
Sbjct: 230 QRLVQNCLWTLRNLSDAATKQEGM 253
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 11/266 (4%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 70 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 128
Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 256
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 129 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 187
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 188 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 246
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 376
Q G L LLG S ++ A +SN+T N V G + L
Sbjct: 247 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 302
Query: 377 VNLLQNA--EFDIKKEAAWAISNATS 400
V + A DI + A A+ + TS
Sbjct: 303 VRTVLRAGDREDITEPAICALRHLTS 328
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 154
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 384 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 443
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 444 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 479
>pdb|3AU3|A Chain A, Crystal Structure Of Armadillo Repeat Domain Of Apc
Length = 344
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 96/236 (40%), Gaps = 18/236 (7%)
Query: 176 VREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAK------LSMLRNATWTLS 228
+R A AL N+ GD L +G L+AQL ++ S+LRN +W +
Sbjct: 109 LRRYAGXALTNLTFGDVANKATLCSXKGCXRALVAQLKSESEDLQQVIASVLRNLSWR-A 167
Query: 229 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 288
+ K V+ ++ + + + A W LS + T +K G
Sbjct: 168 DVNSKKTLREVGSVKALXECALEVKKESTLKSVLSALWNLS--AHCTENKADICAVDGAL 225
Query: 289 PRLVELLGHPSPSVLIPA-------LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH 341
LV L + S + + LR V +++ ++ Q + L LL L SH
Sbjct: 226 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SH 284
Query: 342 KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 397
+I AC T+ N++A N +A+ D G V L NL+ + I +A A+ N
Sbjct: 285 SLTIVSNACGTLWNLSARNPKDQEALWDXGAVSXLKNLIHSKHKXIAXGSAAALRN 340
>pdb|2DB0|A Chain A, Crystal Structure Of Ph0542
pdb|2DB0|B Chain B, Crystal Structure Of Ph0542
Length = 253
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 206 PLLAQLNERAKLSML----RNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVL 261
P+L R +SML R T NF + F V P LP + L+H DE V
Sbjct: 139 PMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVR 198
Query: 262 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 294
A AL +L+ NDK++ V V RL EL
Sbjct: 199 ASAVEALVHLA-TLNDKLRKV----VIKRLEEL 226
>pdb|3NMW|A Chain A, Crytal Structure Of Armadillo Repeats Domain Of Apc
pdb|3NMW|B Chain B, Crytal Structure Of Armadillo Repeats Domain Of Apc
Length = 354
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 96/236 (40%), Gaps = 18/236 (7%)
Query: 176 VREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAK------LSMLRNATWTLS 228
+R A AL N+ GD L +G L+AQL ++ S+LRN +W +
Sbjct: 100 LRRYAGXALTNLTFGDVANKATLCSXKGCXRALVAQLKSESEDLQQVIASVLRNLSWR-A 158
Query: 229 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 288
+ K V+ ++ + + + A W LS + T +K G
Sbjct: 159 DVNSKKTLREVGSVKALXECALEVKKESTLKSVLSALWNLS--AHCTENKADICAVDGAL 216
Query: 289 PRLVELLGHPSPSVLIPA-------LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH 341
LV L + S + + LR V +++ ++ Q + L LL L SH
Sbjct: 217 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SH 275
Query: 342 KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 397
+I AC T+ N++A N +A+ D G V L NL+ + I +A A+ N
Sbjct: 276 SLTIVSNACGTLWNLSARNPKDQEALWDXGAVSXLKNLIHSKHKXIAXGSAAALRN 331
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 61/161 (37%), Gaps = 30/161 (18%)
Query: 120 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQ 179
P+ VE Q Q A TN+ T+ V+ D +P+ + LL P+ DVR
Sbjct: 127 PKIVE--------QSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNW 178
Query: 180 AVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSML-----RNATWTLSNFCRG- 233
A +A+ D+ RD + L NE ++ + R LS C
Sbjct: 179 AAFAININKYDNSDIRD------CFVEXLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDEL 232
Query: 234 KPQPPFDQV---------RPALPAL-AQLVHSNDEEVLTDA 264
K +D + + LP L L +D E++T A
Sbjct: 233 KKNTVYDDIIEAAGELGDKTLLPVLDTXLYKFDDNEIITSA 273
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 66 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 121
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK 343
N++ + + G L ++ LL ++ K
Sbjct: 122 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK 154
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 77 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 135
Query: 199 LSQGALIPLLAQLNE 213
G L ++A LN+
Sbjct: 136 RLAGGLQKMVALLNK 150
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 80/194 (41%), Gaps = 17/194 (8%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV+ LG P SVL A+ T+
Sbjct: 12 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKXLGSPVDSVLFYAITTL 67
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 369
N++ + + G L + LL ++ K + C I + GN++ ++
Sbjct: 68 HNLLLHQEGAKXAVRLAGGLQKXVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 125
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 427
+G LVN+ + ++ + W S +V G + L P
Sbjct: 126 SGGPQALVNIXRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGXQALGLHLTDPS 182
Query: 428 PRIVTVCLEGLENI 441
R+V CL L N+
Sbjct: 183 QRLVQNCLWTLRNL 196
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQF----------EAAWALTNIASGTSENTK 154
+ G +PR V+ L+R Q QF E +I + N
Sbjct: 337 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRXEEIVEGCTGALHILARDVHNRI 396
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 397 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 432
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 102/290 (35%), Gaps = 63/290 (21%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK L SP D V A+ L N+ + V
Sbjct: 23 AGTLHNL-SHHREGLLAIFKSGGIPALVKXLGSPVDSVLFYAITTLHNLLLHQEGAKXAV 81
Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHSND 257
G L +A LN + + L T L G + + P AL + +
Sbjct: 82 RLAGGLQKXVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIXRTYT 140
Query: 258 -EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
E++L L LS +++K A++EAG L L PS R V N
Sbjct: 141 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGXQALGLHLTDPSQ-------RLVQN---- 188
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 376
C+ WT+ N++ Q GL+G L
Sbjct: 189 ------CL--------------------------WTLRNLSDAATKQEGX---EGLLGTL 213
Query: 377 VNLLQNAEFDIKKEAAWAISNATS------------GGTHEQIKYLVREG 414
V LL + + ++ AA +SN T GG ++ ++R G
Sbjct: 214 VQLLGSDDINVVTCAAGILSNLTCNNYKNKXXVCQVGGIEALVRTVLRAG 263
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 35.0 bits (79), Expect = 0.10, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 66 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 121
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK 343
N++ + + G L ++ LL ++ K
Sbjct: 122 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK 154
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 28/63 (44%)
Query: 151 ENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQ 210
E + G +P VK+L SP D V A+ L N+ + V G L ++A
Sbjct: 88 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 147
Query: 211 LNE 213
LN+
Sbjct: 148 LNK 150
>pdb|1QGK|B Chain B, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
Length = 44
Score = 32.7 bits (73), Expect = 0.51, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 12 RRNRYK-VAVDADEGRRRREDNMVEIRKNKREESLLKKR 49
R +R+K D+ E RRRR + VE+RK K+++ +LK+R
Sbjct: 3 RLHRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRR 41
>pdb|2ZBX|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (Wild Type) With Imidazole Bound
Length = 412
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 13/154 (8%)
Query: 343 KSIKKEACWTISNITAGNRD----QIQAVIDAGLVGPLV-NLLQNAEFDIKKEAAWAISN 397
+S ++ T N AG D Q Q AGLVG LV + L N E D ++ + A+
Sbjct: 182 QSTDAQSALTARNDLAGYLDGLITQFQTEPGAGLVGALVADQLANGEIDREELISTAMLL 241
Query: 398 ATSGGTHEQIKYLVREGCI----KPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGT 453
+G HE + I P + D +V +E L L + +
Sbjct: 242 LIAG--HETTASMTSLSVITLLDHPEQYAALRADRSLVPGAVEELLRYLAIADIAGGR-V 298
Query: 454 ATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYE 487
ATAD+ QL+ EG+ + ++ + D +YE
Sbjct: 299 ATADIEVEGQLIRAGEGVIVVNSIANRDGT-VYE 331
>pdb|2ZBY|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (R84a Mutant)
pdb|2ZBZ|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (R84a Mutant) In Complex With
1,25-Dihydroxyvitamin D3
Length = 412
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 13/154 (8%)
Query: 343 KSIKKEACWTISNITAGNRD----QIQAVIDAGLVGPLV-NLLQNAEFDIKKEAAWAISN 397
+S ++ T N AG D Q Q AGLVG LV + L N E D ++ + A+
Sbjct: 182 QSTDAQSALTARNDLAGYLDGLITQFQTEPGAGLVGALVADQLANGEIDREELISTAMLL 241
Query: 398 ATSGGTHEQIKYLVREGCI----KPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGT 453
+G HE + I P + D +V +E L L + +
Sbjct: 242 LIAG--HETTASMTSLSVITLLDHPEQYAALRADRSLVPGAVEELLRYLAIADIAGGR-V 298
Query: 454 ATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYE 487
ATAD+ QL+ EG+ + ++ + D +YE
Sbjct: 299 ATADIEVEGQLIRAGEGVIVVNSIANRDGT-VYE 331
>pdb|3CV8|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (R84f Mutant)
Length = 412
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 13/154 (8%)
Query: 343 KSIKKEACWTISNITAGNRD----QIQAVIDAGLVGPLV-NLLQNAEFDIKKEAAWAISN 397
+S ++ T N AG D Q Q AGLVG LV + L N E D ++ + A+
Sbjct: 182 QSTDAQSALTARNDLAGYLDGLITQFQTEPGAGLVGALVADQLANGEIDREELISTAMLL 241
Query: 398 ATSGGTHEQIKYLVREGCI----KPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGT 453
+G HE + I P + D +V +E L L + +
Sbjct: 242 LIAG--HETTASMTSLSVITLLDHPEQYAALRADRSLVPGAVEELLRYLAIADIAGGR-V 298
Query: 454 ATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYE 487
ATAD+ QL+ EG+ + ++ + D +YE
Sbjct: 299 ATADIEVEGQLIRAGEGVIVVNSIANRDGT-VYE 331
>pdb|1WCU|A Chain A, Cbm29_1, A Family 29 Carbohydrate Binding Module From
Piromyces Equi
Length = 153
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 461 YAQLVEEAEGLEKIENLQSHDNNEIYE----KAVKILETYWLEEDDE----TIAAGDGPQ 512
Y Q+ E EGL K++ ++ +D E + ++ Y E DDE I DGP
Sbjct: 65 YLQVKTETEGLVKVQGVRGYDETEAFNVGSFRSSSDFTEYKFEVDDEYQFDRIIVQDGPA 124
Query: 513 PGFP 516
P
Sbjct: 125 SNIP 128
>pdb|3CV9|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (R73aR84A MUTANT) IN COMPLEX WITH 1ALPHA,25-
Dihydroxyvitamin D3
Length = 412
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 13/154 (8%)
Query: 343 KSIKKEACWTISNITAGNRD----QIQAVIDAGLVGPLV-NLLQNAEFDIKKEAAWAISN 397
+S ++ T N AG D Q Q AGLVG LV + L N E D ++ + A+
Sbjct: 182 QSTDAQSALTARNDLAGYLDGLITQFQTEPGAGLVGALVADQLANGEIDREELISTAMLL 241
Query: 398 ATSGGTHEQIKYLVREGCI----KPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGT 453
+G HE + I P + D +V +E L L + +
Sbjct: 242 LIAG--HETTASMTSLSVITLLDHPEQYAALRADRSLVPGAVEELLRYLAIADIAGGR-V 298
Query: 454 ATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYE 487
ATAD+ QL+ EG+ + ++ + D +YE
Sbjct: 299 ATADIEVEGQLIRAGEGVIVVNSIANRDGT-VYE 331
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Query: 111 EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA 170
E+ I V+P E + D+ + + A A +I G N + A+P ++L+
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDW-RYRDAAVMAFGSILEGPEPNQLKPLVIQAMPTLIELMK 418
Query: 171 SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--RAKLSMLRNATWTLS 228
PS VR+ W +G + P + ++ L PLL L E A+ + N W S
Sbjct: 419 DPSVVVRDTTAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFS 475
Query: 229 NF 230
+
Sbjct: 476 SL 477
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 17/138 (12%)
Query: 162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLR 221
+P+ +LL V+E + LG +A + ++ LIP L Q K +++R
Sbjct: 399 LPLLKELLFHHEWVVKESGILVLGAIAEGC--MQGMIPYLPELIPHLIQCLSDKK-ALVR 455
Query: 222 NAT-WTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKI 279
+ T WTLS + QPP ++P + L + + +++ V AC A
Sbjct: 456 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAF----------- 504
Query: 280 QAVIEAGVCPRLVELLGH 297
A +E C LV L +
Sbjct: 505 -ATLEEEACTELVPYLAY 521
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--RAKLS 218
A+P ++L+ PS VR+ A W +G + P + ++ L PLL L E A+
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 465
Query: 219 MLRNATWTLSNF 230
+ N W S+
Sbjct: 466 VASNVCWAFSSL 477
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 17/138 (12%)
Query: 162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLR 221
+P+ +LL V+E + LG +A + ++ LIP L Q K +++R
Sbjct: 361 LPLLKELLFHHEWVVKESGILVLGAIAEGC--MQGMIPYLPELIPHLIQCLSDKK-ALVR 417
Query: 222 NAT-WTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKI 279
+ T WTLS + QPP ++P + L + + +++ V AC A
Sbjct: 418 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAF----------- 466
Query: 280 QAVIEAGVCPRLVELLGH 297
A +E C LV L +
Sbjct: 467 -ATLEEEACTELVPYLAY 483
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 17/138 (12%)
Query: 162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLR 221
+P+ +LL V+E + LG +A + ++ LIP L Q K +++R
Sbjct: 374 LPLLKELLFHHEWVVKESGILVLGAIAEGC--MQGMIPYLPELIPHLIQCLSDKK-ALVR 430
Query: 222 NAT-WTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKI 279
+ T WTLS + QPP ++P + L + + +++ V AC A
Sbjct: 431 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAF----------- 479
Query: 280 QAVIEAGVCPRLVELLGH 297
A +E C LV L +
Sbjct: 480 -ATLEEEACTELVPYLAY 496
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--RAKLS 218
A+P ++L+ PS VR+ A W +G + P + ++ L PLL L E A+
Sbjct: 284 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 340
Query: 219 MLRNATWTLSNF 230
+ N W S+
Sbjct: 341 VASNVCWAFSSL 352
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--RAKLS 218
A+P ++L+ PS VR+ A W +G + P + ++ L PLL L E A+
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 465
Query: 219 MLRNATWTLSNF 230
+ N W S+
Sbjct: 466 VASNVCWAFSSL 477
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--RAKLS 218
A+P ++L+ PS VR+ A W +G + P + ++ L PLL L E A+
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 465
Query: 219 MLRNATWTLSNF 230
+ N W S+
Sbjct: 466 VASNVCWAFSSL 477
>pdb|4B4T|N Chain N, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 945
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 33/179 (18%)
Query: 126 LMREDYPQLQFEAAWALTNIASGTSENTKVV-IDHGAVPIFVKLLASPSDDVREQAVWAL 184
++ D L++ A+ + +GT N+ V + H AV + +DDVR AV AL
Sbjct: 539 MLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV-------SDSNDDVRRAAVIAL 591
Query: 185 GNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNAT-WTLSNFCRGK--------- 234
G V +L +P + QL ++ + +R T + L C GK
Sbjct: 592 GFV----------LLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVL 641
Query: 235 ---PQPPFDQVR-PALPALAQLVHSNDEEVLTD-ACWALSYLSDGTNDKIQAVIEAGVC 288
+ P D VR A+ AL+ ++ E++ A ++LS TN + + + G C
Sbjct: 642 DPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGAC 700
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 8/133 (6%)
Query: 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178
V FVE + D + + A A +I G + + H A+P + L+ S V+E
Sbjct: 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKE 429
Query: 179 QAVWALGNVAGDSPRCRDLVLS-QGALIPLLAQLNERAKLSMLRNATWTLSN----FCRG 233
W +G +A D G + L L + K++ N +WT+ N
Sbjct: 430 TTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVA--TNCSWTIINLVEQLAEA 487
Query: 234 KPQPPFDQVRPAL 246
P P ++ PAL
Sbjct: 488 TPSPIYN-FYPAL 499
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 8/133 (6%)
Query: 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178
V FVE + D + + A A +I G + + H A+P + L+ S V+E
Sbjct: 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKE 429
Query: 179 QAVWALGNVAGDSPRCRDLVLS-QGALIPLLAQLNERAKLSMLRNATWTLSN----FCRG 233
W +G +A D G + L L + K++ N +WT+ N
Sbjct: 430 TTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVA--TNCSWTIINLVEQLAEA 487
Query: 234 KPQPPFDQVRPAL 246
P P ++ PAL
Sbjct: 488 TPSPIYN-FYPAL 499
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 23/125 (18%)
Query: 109 PIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWA---------LTNIASGTS--------- 150
P++E + V+PR V+ L++ + AA + I G +
Sbjct: 394 PLQE---AAVIPRLVQLLVKAHQDAQRHVAAGTQQPYTDGVRMEEIVEGCTGALHILARD 450
Query: 151 -ENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLA 209
N + +P+FV+LL S ++++ A L +A D D + ++GA PL+
Sbjct: 451 PMNRMEIFRLNTIPLFVQLLYSSVENIQRVAAGVLCELAQDK-EAADAIDAEGASAPLME 509
Query: 210 QLNER 214
L+ R
Sbjct: 510 LLHSR 514
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 17/138 (12%)
Query: 162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLR 221
+P+ +LL V+E + LG +A + L + LIP L Q K +++R
Sbjct: 399 LPLLKELLFHHEWVVKESGILVLGAIAEGCXQGXIPYLPE--LIPHLIQCLSDKK-ALVR 455
Query: 222 NAT-WTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKI 279
+ T WTLS + QPP ++P L + + +++ V AC A
Sbjct: 456 SITCWTLSRYAHWVVSQPPDTYLKPLXTELLKRILDSNKRVQEAACSAF----------- 504
Query: 280 QAVIEAGVCPRLVELLGH 297
A +E C LV L +
Sbjct: 505 -ATLEEEACTELVPYLAY 521
>pdb|4ADY|A Chain A, Crystal Structure Of 26s Proteasome Subunit Rpn2
pdb|4ADY|B Chain B, Crystal Structure Of 26s Proteasome Subunit Rpn2
Length = 963
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 20/121 (16%)
Query: 127 MREDYPQLQFEAAWALTNIASGTSENTKVV-IDHGAVPIFVKLLASPSDDVREQAVWALG 185
+ D L++ A+ + +GT N+ V + H AV + +DDVR AV ALG
Sbjct: 551 LASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV-------SDSNDDVRRAAVIALG 603
Query: 186 NVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNAT-WTLSNFCRGKP-QPPFDQVR 243
V +L +P + QL ++ + +R T + L C GK Q D +
Sbjct: 604 FV----------LLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLD 653
Query: 244 P 244
P
Sbjct: 654 P 654
>pdb|3IVY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125, P212121 Crystal Form
pdb|3IW0|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125, C2221 Crystal Form
pdb|3IW1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Androstenedione
pdb|3IW2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Econazole
Length = 433
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 94 ATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153
A T+ + I R + ++GV+PRF + RED +F + N+ +
Sbjct: 72 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 127
Query: 154 KVVIDHGAVPIFVKLLASPSDDVREQA 180
+ +I G P V L D+++E+A
Sbjct: 128 RKIISRGFTPRAVGRL---HDELQERA 151
>pdb|3RQZ|A Chain A, Crystal Structure Of Metallophosphoesterase From
Sphaerobacter Thermophilus
pdb|3RQZ|B Chain B, Crystal Structure Of Metallophosphoesterase From
Sphaerobacter Thermophilus
pdb|3RQZ|C Chain C, Crystal Structure Of Metallophosphoesterase From
Sphaerobacter Thermophilus
Length = 246
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 13/70 (18%)
Query: 165 FVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNAT 224
V L A SD R +W+LG++ G PR R+ V L+ +LA +S++ N
Sbjct: 16 LVALEAVLSDAGRVDDIWSLGDIVGYGPRPRECV----ELVRVLA-----PNISVIGNHD 66
Query: 225 WTLSNFCRGK 234
W C G+
Sbjct: 67 WA----CIGR 72
>pdb|2X5W|A Chain A, X-Ray Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Substrate Cholest-4-En-3-One
Length = 440
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 94 ATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153
A T+ + I R + ++GV+PRF + RED +F + N+ +
Sbjct: 79 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 134
Query: 154 KVVIDHGAVPIFVKLLASPSDDVREQA 180
+ +I G P V L D+++E+A
Sbjct: 135 RKIISRGFTPRAVGRL---HDELQERA 158
>pdb|2XC3|A Chain A, X-Ray Structure Of Mycobacterium Tuberculosis Cyp125 Bound
To The Reverse Type I Inhibitor
Length = 424
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 94 ATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153
A T+ + I R + ++GV+PRF + RED +F + N+ +
Sbjct: 63 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 118
Query: 154 KVVIDHGAVPIFVKLLASPSDDVREQA 180
+ +I G P V L D+++E+A
Sbjct: 119 RKIISRGFTPRAVGRL---HDELQERA 142
>pdb|2XN8|A Chain A, X-Ray Structure Of The Substrate-Free Mycobacterium
Tuberculosis Cytochrome P450 Cyp125
Length = 423
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 94 ATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153
A T+ + I R + ++GV+PRF + RED +F + N+ +
Sbjct: 62 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 117
Query: 154 KVVIDHGAVPIFVKLLASPSDDVREQA 180
+ +I G P V L D+++E+A
Sbjct: 118 RKIISRGFTPRAVGRL---HDELQERA 141
>pdb|2X5L|A Chain A, X-Ray Structure Of The Substrate-Free Mycobacterium
Tuberculosis Cytochrome P450 Cyp125, Alternative Crystal
Form
Length = 431
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 94 ATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153
A T+ + I R + ++GV+PRF + RED +F + N+ +
Sbjct: 70 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 125
Query: 154 KVVIDHGAVPIFVKLLASPSDDVREQA 180
+ +I G P V L D+++E+A
Sbjct: 126 RKIISRGFTPRAVGRL---HDELQERA 149
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE 213
A+P ++L+ PS VR+ A W +G + P + ++ L PLL L E
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIE 458
>pdb|1QGR|B Chain B, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 27
Score = 28.5 bits (62), Expect = 9.8, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 26 RRRREDNMVEIRKNKREESLLKKR 49
RRRR + VE+RK K+++ +LK+R
Sbjct: 1 RRRRIEVNVELRKAKKDDQMLKRR 24
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,403,577
Number of Sequences: 62578
Number of extensions: 621913
Number of successful extensions: 2613
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1650
Number of HSP's gapped (non-prelim): 187
length of query: 532
length of database: 14,973,337
effective HSP length: 103
effective length of query: 429
effective length of database: 8,527,803
effective search space: 3658427487
effective search space used: 3658427487
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)