Query 009568
Match_columns 532
No_of_seqs 418 out of 2764
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 14:41:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009568.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009568hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5064 SRP1 Karyopherin (impo 100.0 1.9E-90 4.1E-95 613.6 38.5 514 6-530 4-526 (526)
2 KOG0166 Karyopherin (importin) 100.0 5E-88 1.1E-92 647.0 49.5 508 9-531 5-514 (514)
3 KOG0166 Karyopherin (importin) 100.0 1.9E-43 4E-48 339.9 29.1 368 74-445 109-488 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 6.6E-43 1.4E-47 310.9 22.0 365 73-442 113-495 (526)
5 PLN03200 cellulose synthase-in 100.0 3.3E-40 7.2E-45 362.2 42.5 406 73-501 188-641 (2102)
6 PLN03200 cellulose synthase-in 100.0 1.5E-38 3.2E-43 349.3 42.7 416 74-500 404-862 (2102)
7 KOG4224 Armadillo repeat prote 100.0 1.3E-29 2.8E-34 228.2 23.4 364 74-447 85-450 (550)
8 KOG4224 Armadillo repeat prote 100.0 1.6E-28 3.5E-33 221.1 25.4 364 71-445 123-495 (550)
9 PF05804 KAP: Kinesin-associat 99.9 2.4E-24 5.3E-29 220.0 36.8 395 77-501 253-652 (708)
10 PF05804 KAP: Kinesin-associat 99.9 2.3E-24 4.9E-29 220.2 32.7 382 73-476 289-676 (708)
11 KOG0168 Putative ubiquitin fus 99.9 3.7E-20 7.9E-25 183.8 28.2 390 75-481 168-655 (1051)
12 KOG1048 Neural adherens juncti 99.8 5E-18 1.1E-22 169.7 25.4 366 118-501 234-687 (717)
13 KOG1048 Neural adherens juncti 99.8 4.9E-17 1.1E-21 162.7 23.8 362 75-444 234-685 (717)
14 PF10508 Proteasom_PSMB: Prote 99.8 3.3E-15 7.2E-20 151.9 36.8 398 77-498 41-462 (503)
15 PF10508 Proteasom_PSMB: Prote 99.8 2.6E-15 5.6E-20 152.7 34.8 402 77-499 6-421 (503)
16 KOG1222 Kinesin associated pro 99.8 5.3E-15 1.1E-19 139.0 31.4 388 75-484 305-698 (791)
17 KOG4199 Uncharacterized conser 99.7 1.1E-14 2.4E-19 131.1 28.9 318 115-441 102-442 (461)
18 KOG2122 Beta-catenin-binding p 99.7 2E-15 4.2E-20 157.7 27.0 366 74-446 197-604 (2195)
19 KOG4500 Rho/Rac GTPase guanine 99.7 2E-15 4.4E-20 140.0 21.3 355 85-446 53-434 (604)
20 KOG2171 Karyopherin (importin) 99.7 4.3E-14 9.3E-19 146.8 32.2 362 74-447 118-508 (1075)
21 KOG4500 Rho/Rac GTPase guanine 99.7 2.6E-14 5.7E-19 132.7 25.8 403 74-491 87-512 (604)
22 PRK09687 putative lyase; Provi 99.7 6.5E-15 1.4E-19 137.5 21.3 255 118-440 24-279 (280)
23 KOG1222 Kinesin associated pro 99.7 5.6E-14 1.2E-18 132.2 26.5 379 86-494 275-659 (791)
24 KOG4199 Uncharacterized conser 99.7 4.7E-14 1E-18 127.1 24.6 309 85-400 118-444 (461)
25 PRK09687 putative lyase; Provi 99.7 2.3E-14 4.9E-19 133.9 23.5 254 75-397 24-279 (280)
26 KOG2122 Beta-catenin-binding p 99.6 6.7E-14 1.4E-18 146.5 23.4 328 71-402 232-603 (2195)
27 KOG2023 Nuclear transport rece 99.6 6.7E-15 1.5E-19 143.3 15.2 357 74-444 128-547 (885)
28 KOG2171 Karyopherin (importin) 99.6 1.6E-12 3.4E-17 135.4 32.0 392 77-495 82-501 (1075)
29 PRK13800 putative oxidoreducta 99.6 4.8E-13 1.1E-17 145.9 29.4 274 75-439 622-895 (897)
30 KOG1293 Proteins containing ar 99.6 3.8E-12 8.3E-17 124.8 30.7 405 79-499 14-534 (678)
31 KOG2023 Nuclear transport rece 99.6 3E-13 6.5E-18 132.0 20.7 318 116-445 127-507 (885)
32 PF04826 Arm_2: Armadillo-like 99.6 7.4E-13 1.6E-17 120.8 21.2 238 241-489 9-253 (254)
33 PTZ00429 beta-adaptin; Provisi 99.5 4.9E-11 1.1E-15 124.7 35.5 338 75-446 69-436 (746)
34 PRK13800 putative oxidoreducta 99.5 4E-12 8.7E-17 138.8 28.3 278 115-495 619-896 (897)
35 PF01602 Adaptin_N: Adaptin N 99.5 1.3E-11 2.8E-16 128.9 28.5 257 74-360 42-298 (526)
36 PF04826 Arm_2: Armadillo-like 99.5 1.6E-12 3.5E-17 118.5 18.6 197 113-316 8-206 (254)
37 KOG1293 Proteins containing ar 99.5 6.9E-12 1.5E-16 123.1 23.2 372 72-447 49-537 (678)
38 cd00020 ARM Armadillo/beta-cat 99.5 1.1E-12 2.4E-17 107.5 13.9 119 112-232 2-120 (120)
39 cd00020 ARM Armadillo/beta-cat 99.5 1.5E-12 3.3E-17 106.7 13.3 118 282-400 3-120 (120)
40 PTZ00429 beta-adaptin; Provisi 99.4 6.5E-10 1.4E-14 116.4 34.4 294 74-400 32-326 (746)
41 PF01602 Adaptin_N: Adaptin N 99.4 1.4E-10 3E-15 121.1 29.0 325 79-445 9-335 (526)
42 PF01749 IBB: Importin beta bi 99.4 7.8E-14 1.7E-18 107.0 2.2 90 7-96 4-96 (97)
43 cd00256 VATPase_H VATPase_H, r 99.4 3.1E-10 6.6E-15 110.4 24.6 322 75-400 54-425 (429)
44 cd00256 VATPase_H VATPase_H, r 99.3 4.7E-10 1E-14 109.1 24.7 348 117-497 53-424 (429)
45 KOG0168 Putative ubiquitin fus 99.3 4.6E-10 1E-14 113.0 24.7 343 75-425 212-654 (1051)
46 KOG1241 Karyopherin (importin) 99.3 2E-10 4.4E-15 114.4 21.7 364 75-448 130-535 (859)
47 KOG1241 Karyopherin (importin) 99.3 1.4E-09 3E-14 108.6 23.7 370 77-466 262-682 (859)
48 KOG1061 Vesicle coat complex A 99.2 1E-08 2.3E-13 103.3 25.3 342 74-448 49-420 (734)
49 KOG0213 Splicing factor 3b, su 99.1 1.1E-09 2.3E-14 108.8 15.0 343 75-442 717-1064(1172)
50 KOG1059 Vesicle coat complex A 99.1 1.2E-07 2.7E-12 94.4 28.2 218 76-316 146-366 (877)
51 KOG0946 ER-Golgi vesicle-tethe 99.1 2.2E-07 4.8E-12 93.6 29.3 324 74-403 22-402 (970)
52 KOG2759 Vacuolar H+-ATPase V1 99.1 9.7E-08 2.1E-12 89.8 24.6 321 118-443 66-438 (442)
53 KOG2160 Armadillo/beta-catenin 99.1 4.3E-08 9.2E-13 91.0 21.8 189 256-446 95-285 (342)
54 KOG0946 ER-Golgi vesicle-tethe 99.1 5.9E-07 1.3E-11 90.6 30.5 325 118-448 23-404 (970)
55 KOG2759 Vacuolar H+-ATPase V1 99.1 3.4E-08 7.3E-13 92.8 20.6 278 76-359 116-439 (442)
56 KOG2160 Armadillo/beta-catenin 99.0 1E-08 2.2E-13 95.1 15.8 184 131-315 96-282 (342)
57 KOG1789 Endocytosis protein RM 99.0 8.5E-07 1.9E-11 91.8 30.4 328 90-425 1741-2141(2235)
58 PF03224 V-ATPase_H_N: V-ATPas 99.0 9.6E-09 2.1E-13 98.8 15.8 230 248-494 59-310 (312)
59 COG5215 KAP95 Karyopherin (imp 99.0 2.7E-07 5.9E-12 89.6 23.9 355 74-442 321-710 (858)
60 PF03224 V-ATPase_H_N: V-ATPas 99.0 1.9E-08 4.1E-13 96.7 15.7 228 203-433 56-304 (312)
61 COG5215 KAP95 Karyopherin (imp 99.0 9.8E-08 2.1E-12 92.6 19.8 357 77-447 136-533 (858)
62 KOG1517 Guanine nucleotide bin 98.9 4.5E-08 9.7E-13 101.1 18.3 271 88-369 450-743 (1387)
63 KOG1062 Vesicle coat complex A 98.9 9.7E-07 2.1E-11 89.4 26.4 362 79-497 112-494 (866)
64 KOG1242 Protein containing ada 98.9 3.1E-06 6.7E-11 84.0 27.4 314 118-448 97-449 (569)
65 KOG1062 Vesicle coat complex A 98.9 1.1E-06 2.3E-11 89.1 24.5 288 75-400 143-451 (866)
66 COG5181 HSH155 U2 snRNP splice 98.9 1E-08 2.2E-13 100.0 9.6 262 161-442 605-869 (975)
67 KOG0213 Splicing factor 3b, su 98.8 6.5E-07 1.4E-11 89.6 20.6 334 119-500 801-1144(1172)
68 KOG1059 Vesicle coat complex A 98.8 6.5E-06 1.4E-10 82.5 27.5 307 86-424 102-423 (877)
69 KOG1824 TATA-binding protein-i 98.8 1.8E-06 3.9E-11 88.8 23.2 353 78-445 9-404 (1233)
70 COG5369 Uncharacterized conser 98.8 5.9E-08 1.3E-12 93.5 11.4 304 181-496 410-739 (743)
71 KOG4413 26S proteasome regulat 98.7 3.4E-05 7.3E-10 70.5 27.5 339 76-421 84-459 (524)
72 KOG0212 Uncharacterized conser 98.7 1.1E-06 2.4E-11 85.4 18.6 363 114-495 81-461 (675)
73 COG5181 HSH155 U2 snRNP splice 98.7 1.1E-06 2.4E-11 86.2 17.1 333 75-443 605-946 (975)
74 KOG1824 TATA-binding protein-i 98.7 2.6E-06 5.5E-11 87.7 19.9 371 86-496 582-1034(1233)
75 KOG0212 Uncharacterized conser 98.7 1.5E-06 3.3E-11 84.6 17.4 318 75-404 85-410 (675)
76 KOG1061 Vesicle coat complex A 98.7 2.3E-06 4.9E-11 86.8 19.3 338 75-444 87-454 (734)
77 KOG0211 Protein phosphatase 2A 98.6 1.1E-05 2.4E-10 84.3 24.1 258 204-493 400-659 (759)
78 KOG1517 Guanine nucleotide bin 98.6 1.6E-06 3.4E-11 90.0 17.6 254 74-331 472-748 (1387)
79 KOG1242 Protein containing ada 98.6 3.8E-05 8.2E-10 76.5 26.2 328 75-424 97-463 (569)
80 KOG1060 Vesicle coat complex A 98.6 2.5E-05 5.5E-10 79.2 24.9 284 124-448 150-463 (968)
81 KOG3678 SARM protein (with ste 98.6 1.8E-06 4E-11 82.1 16.0 272 110-398 173-450 (832)
82 TIGR02270 conserved hypothetic 98.6 1.2E-05 2.6E-10 79.2 22.2 241 75-400 55-296 (410)
83 COG5369 Uncharacterized conser 98.6 7E-07 1.5E-11 86.3 11.7 282 112-398 426-739 (743)
84 KOG3678 SARM protein (with ste 98.5 3.7E-06 7.9E-11 80.1 16.2 265 74-355 180-449 (832)
85 KOG1060 Vesicle coat complex A 98.5 4.1E-05 8.9E-10 77.7 23.9 358 75-499 72-459 (968)
86 KOG1789 Endocytosis protein RM 98.5 2.7E-05 5.9E-10 81.1 22.2 303 73-383 1770-2142(2235)
87 KOG2973 Uncharacterized conser 98.5 4.3E-05 9.4E-10 69.4 20.9 278 119-444 5-316 (353)
88 TIGR02270 conserved hypothetic 98.5 5.4E-05 1.2E-09 74.6 22.9 242 118-443 55-296 (410)
89 KOG2973 Uncharacterized conser 98.5 0.00014 2.9E-09 66.3 22.7 272 205-498 6-315 (353)
90 PF05536 Neurochondrin: Neuroc 98.4 0.00057 1.2E-08 70.4 29.8 380 75-476 6-458 (543)
91 KOG1058 Vesicle coat complex C 98.4 0.00015 3.3E-09 73.4 24.2 149 328-501 317-466 (948)
92 COG1413 FOG: HEAT repeat [Ener 98.4 0.00018 4E-09 70.3 24.1 250 75-401 44-305 (335)
93 KOG2259 Uncharacterized conser 98.3 2.5E-05 5.4E-10 77.7 16.7 221 207-445 203-441 (823)
94 KOG4413 26S proteasome regulat 98.3 0.00011 2.4E-09 67.3 19.3 263 223-499 63-334 (524)
95 PF14664 RICTOR_N: Rapamycin-i 98.3 0.0002 4.4E-09 69.8 22.5 317 162-497 27-363 (371)
96 KOG0211 Protein phosphatase 2A 98.3 0.00013 2.8E-09 76.6 22.3 387 76-501 239-628 (759)
97 KOG1077 Vesicle coat complex A 98.3 0.00062 1.3E-08 68.6 25.4 324 76-433 76-423 (938)
98 PF14664 RICTOR_N: Rapamycin-i 98.3 8.2E-05 1.8E-09 72.5 19.1 314 77-400 28-364 (371)
99 KOG0915 Uncharacterized conser 98.2 6.4E-05 1.4E-09 81.6 18.4 379 76-488 820-1235(1702)
100 PF00514 Arm: Armadillo/beta-c 98.2 2.6E-06 5.6E-11 54.2 4.8 41 149-189 1-41 (41)
101 COG1413 FOG: HEAT repeat [Ener 98.2 0.00029 6.4E-09 68.9 21.1 215 117-396 43-269 (335)
102 KOG4646 Uncharacterized conser 98.2 2.9E-05 6.4E-10 61.4 10.9 153 329-497 17-169 (173)
103 KOG1240 Protein kinase contain 98.2 0.00012 2.5E-09 77.9 18.0 267 204-498 424-725 (1431)
104 PF10165 Ric8: Guanine nucleot 98.2 0.00047 1E-08 69.4 22.0 253 109-362 14-341 (446)
105 KOG1077 Vesicle coat complex A 98.2 0.0018 4E-08 65.4 25.3 338 121-497 78-436 (938)
106 PF00514 Arm: Armadillo/beta-c 98.2 4.4E-06 9.5E-11 53.1 4.9 41 360-400 1-41 (41)
107 KOG0915 Uncharacterized conser 98.1 0.0012 2.7E-08 72.1 25.5 318 117-446 998-1347(1702)
108 PF12460 MMS19_C: RNAPII trans 98.1 0.004 8.7E-08 62.6 28.1 347 77-447 2-398 (415)
109 KOG2259 Uncharacterized conser 98.1 5.7E-05 1.2E-09 75.3 14.1 250 164-436 202-468 (823)
110 KOG4646 Uncharacterized conser 98.1 2E-05 4.3E-10 62.4 8.8 115 117-234 16-130 (173)
111 KOG2062 26S proteasome regulat 98.1 9.9E-05 2.2E-09 74.5 15.9 265 117-429 413-680 (929)
112 KOG1240 Protein kinase contain 98.1 8E-05 1.7E-09 79.1 15.5 268 76-358 424-725 (1431)
113 COG5231 VMA13 Vacuolar H+-ATPa 98.1 0.00029 6.4E-09 64.3 17.1 230 124-357 156-427 (432)
114 PF12348 CLASP_N: CLASP N term 98.1 2.8E-05 6E-10 71.5 10.8 187 295-499 16-207 (228)
115 COG5096 Vesicle coat complex, 98.1 0.0043 9.3E-08 64.9 27.3 141 75-233 56-196 (757)
116 PF13513 HEAT_EZ: HEAT-like re 98.1 6.5E-06 1.4E-10 56.4 4.9 55 343-398 1-55 (55)
117 PF05536 Neurochondrin: Neuroc 98.1 0.00043 9.3E-09 71.2 19.8 235 162-399 7-260 (543)
118 PF12755 Vac14_Fab1_bd: Vacuol 98.0 3.4E-05 7.4E-10 59.2 8.5 95 345-443 2-96 (97)
119 PF12348 CLASP_N: CLASP N term 98.0 8.4E-05 1.8E-09 68.3 12.9 187 254-447 17-210 (228)
120 KOG1943 Beta-tubulin folding c 98.0 0.004 8.6E-08 66.2 24.4 258 117-400 341-611 (1133)
121 COG5231 VMA13 Vacuolar H+-ATPa 97.9 0.00076 1.6E-08 61.7 16.5 239 247-499 152-429 (432)
122 COG5240 SEC21 Vesicle coat com 97.9 0.0005 1.1E-08 67.7 16.3 278 87-400 277-555 (898)
123 COG5240 SEC21 Vesicle coat com 97.9 0.0005 1.1E-08 67.7 16.0 286 118-442 265-554 (898)
124 PF13646 HEAT_2: HEAT repeats; 97.9 3.6E-05 7.9E-10 58.7 6.5 86 76-185 1-88 (88)
125 PF13646 HEAT_2: HEAT repeats; 97.9 3.6E-05 7.9E-10 58.7 5.9 87 119-228 1-88 (88)
126 COG5096 Vesicle coat complex, 97.8 0.033 7.1E-07 58.5 27.9 169 83-274 28-196 (757)
127 KOG2734 Uncharacterized conser 97.8 0.0072 1.6E-07 58.0 21.1 240 94-338 104-371 (536)
128 KOG1991 Nuclear transport rece 97.8 0.014 3.1E-07 61.7 24.7 339 93-443 391-757 (1010)
129 PF13513 HEAT_EZ: HEAT-like re 97.7 2.8E-05 6.1E-10 53.2 3.1 55 300-356 1-55 (55)
130 KOG2734 Uncharacterized conser 97.7 0.0042 9.1E-08 59.6 17.2 223 72-295 123-370 (536)
131 KOG4535 HEAT and armadillo rep 97.7 0.00027 5.9E-09 68.0 9.4 299 133-438 270-598 (728)
132 KOG0567 HEAT repeat-containing 97.6 0.01 2.2E-07 53.2 18.3 244 85-399 16-279 (289)
133 KOG4535 HEAT and armadillo rep 97.6 0.00025 5.4E-09 68.3 8.3 309 77-400 256-603 (728)
134 KOG2274 Predicted importin 9 [ 97.5 0.014 3E-07 61.0 20.4 239 121-367 453-698 (1005)
135 KOG1991 Nuclear transport rece 97.5 0.031 6.7E-07 59.2 22.9 297 137-447 391-715 (1010)
136 PF09759 Atx10homo_assoc: Spin 97.5 0.0006 1.3E-08 52.3 8.0 67 134-200 2-70 (102)
137 PF12460 MMS19_C: RNAPII trans 97.5 0.025 5.5E-07 56.9 21.8 297 87-402 56-396 (415)
138 KOG1020 Sister chromatid cohes 97.5 0.12 2.5E-06 57.6 27.4 144 75-234 817-962 (1692)
139 KOG1943 Beta-tubulin folding c 97.5 0.12 2.6E-06 55.5 26.7 343 75-443 342-705 (1133)
140 KOG1248 Uncharacterized conser 97.5 0.04 8.6E-07 59.6 23.0 237 206-447 657-902 (1176)
141 KOG1078 Vesicle coat complex C 97.5 0.012 2.5E-07 60.7 18.2 260 118-399 246-531 (865)
142 smart00185 ARM Armadillo/beta- 97.4 0.00039 8.4E-09 44.0 5.3 39 150-188 2-40 (41)
143 KOG2274 Predicted importin 9 [ 97.4 0.013 2.7E-07 61.3 18.2 318 85-411 461-791 (1005)
144 KOG0567 HEAT repeat-containing 97.4 0.014 3E-07 52.4 16.1 256 119-441 5-278 (289)
145 KOG1058 Vesicle coat complex C 97.4 0.026 5.6E-07 57.9 19.9 142 286-445 317-465 (948)
146 PF12755 Vac14_Fab1_bd: Vacuol 97.4 0.0012 2.6E-08 50.8 8.3 92 303-398 3-94 (97)
147 KOG2062 26S proteasome regulat 97.3 0.027 5.8E-07 57.7 19.0 170 287-495 520-691 (929)
148 PF12717 Cnd1: non-SMC mitotic 97.3 0.012 2.7E-07 51.4 15.0 93 299-401 1-93 (178)
149 COG5116 RPN2 26S proteasome re 97.3 0.0076 1.7E-07 59.6 14.5 155 248-427 520-675 (926)
150 KOG4151 Myosin assembly protei 97.3 0.011 2.4E-07 61.1 16.3 223 192-421 494-719 (748)
151 smart00185 ARM Armadillo/beta- 97.3 0.0007 1.5E-08 42.8 5.2 38 362-399 3-40 (41)
152 PF12717 Cnd1: non-SMC mitotic 97.3 0.0085 1.8E-07 52.4 13.7 96 257-362 1-97 (178)
153 PF08569 Mo25: Mo25-like; Int 97.3 0.026 5.6E-07 54.2 17.8 206 280-498 70-283 (335)
154 PF08569 Mo25: Mo25-like; Int 97.3 0.0092 2E-07 57.3 14.6 202 155-358 71-283 (335)
155 KOG0414 Chromosome condensatio 97.2 0.016 3.4E-07 62.4 17.0 161 117-298 919-1083(1251)
156 PF10165 Ric8: Guanine nucleot 97.2 0.055 1.2E-06 54.7 20.2 204 84-291 42-296 (446)
157 PRK14707 hypothetical protein; 97.2 0.31 6.6E-06 56.2 26.8 355 119-494 165-525 (2710)
158 KOG1020 Sister chromatid cohes 97.2 0.52 1.1E-05 52.7 27.9 229 247-499 1124-1406(1692)
159 KOG1967 DNA repair/transcripti 97.2 0.0024 5.3E-08 66.5 10.0 190 162-356 817-1022(1030)
160 KOG0414 Chromosome condensatio 97.1 0.0099 2.1E-07 63.9 14.5 146 242-403 917-1067(1251)
161 PF05918 API5: Apoptosis inhib 97.1 0.032 6.9E-07 56.8 17.6 296 120-447 26-349 (556)
162 KOG1248 Uncharacterized conser 97.1 0.036 7.7E-07 60.0 18.3 243 122-369 658-910 (1176)
163 PF09759 Atx10homo_assoc: Spin 97.1 0.0033 7.2E-08 48.3 8.0 68 302-369 2-70 (102)
164 KOG1243 Protein kinase [Genera 97.0 0.051 1.1E-06 55.7 17.5 193 241-448 327-520 (690)
165 PF11841 DUF3361: Domain of un 97.0 0.036 7.9E-07 46.3 13.6 129 280-409 5-140 (160)
166 PF05004 IFRD: Interferon-rela 97.0 0.13 2.8E-06 49.2 19.3 195 248-447 47-261 (309)
167 KOG1078 Vesicle coat complex C 96.9 0.31 6.8E-06 50.7 22.3 285 162-497 247-531 (865)
168 PF05004 IFRD: Interferon-rela 96.9 0.025 5.4E-07 54.1 13.8 192 75-272 44-256 (309)
169 PF04078 Rcd1: Cell differenti 96.9 0.079 1.7E-06 48.1 15.9 184 257-443 8-218 (262)
170 KOG1967 DNA repair/transcripti 96.9 0.0062 1.4E-07 63.7 10.0 157 242-399 865-1023(1030)
171 PRK14707 hypothetical protein; 96.9 1.4 3.1E-05 51.2 28.3 402 76-498 165-571 (2710)
172 KOG4653 Uncharacterized conser 96.8 0.041 8.9E-07 57.4 15.3 219 213-442 737-963 (982)
173 KOG4151 Myosin assembly protei 96.8 0.023 5.1E-07 58.8 13.4 212 74-292 504-718 (748)
174 KOG3036 Protein involved in ce 96.8 0.086 1.9E-06 46.9 14.8 140 301-443 94-247 (293)
175 PF05918 API5: Apoptosis inhib 96.8 0.072 1.6E-06 54.3 16.3 251 164-444 27-298 (556)
176 KOG3036 Protein involved in ce 96.7 0.11 2.5E-06 46.1 14.6 145 88-234 93-249 (293)
177 PF11698 V-ATPase_H_C: V-ATPas 96.6 0.007 1.5E-07 47.8 6.5 70 415-497 44-114 (119)
178 PF04078 Rcd1: Cell differenti 96.6 0.12 2.7E-06 46.8 15.1 173 261-440 67-259 (262)
179 PF11841 DUF3361: Domain of un 96.6 0.054 1.2E-06 45.3 11.8 126 194-319 3-135 (160)
180 KOG2956 CLIP-associating prote 96.6 0.071 1.5E-06 51.9 14.1 147 203-358 330-477 (516)
181 KOG4653 Uncharacterized conser 96.5 0.031 6.8E-07 58.2 11.9 227 71-311 724-960 (982)
182 PF12719 Cnd3: Nuclear condens 96.5 0.26 5.6E-06 47.1 17.8 171 117-298 26-209 (298)
183 KOG2032 Uncharacterized conser 96.5 0.73 1.6E-05 45.5 20.3 171 224-400 238-415 (533)
184 KOG2032 Uncharacterized conser 96.4 0.29 6.2E-06 48.2 16.9 258 170-443 268-531 (533)
185 PF11698 V-ATPase_H_C: V-ATPas 96.4 0.0056 1.2E-07 48.4 4.5 73 328-400 43-115 (119)
186 KOG3665 ZYG-1-like serine/thre 96.3 0.37 8E-06 51.5 19.1 195 183-396 494-693 (699)
187 PF11701 UNC45-central: Myosin 96.3 0.036 7.8E-07 47.2 9.5 145 288-440 5-156 (157)
188 COG5656 SXM1 Importin, protein 96.3 1.8 3.9E-05 45.1 23.7 298 138-448 390-716 (970)
189 COG5656 SXM1 Importin, protein 96.3 0.61 1.3E-05 48.4 19.0 297 93-403 389-714 (970)
190 KOG2025 Chromosome condensatio 96.2 0.32 6.9E-06 50.1 16.5 108 241-354 82-189 (892)
191 COG5098 Chromosome condensatio 96.0 0.24 5.3E-06 50.7 14.7 172 84-276 863-1040(1128)
192 PF14668 RICTOR_V: Rapamycin-i 96.0 0.066 1.4E-06 38.4 8.0 66 346-414 4-70 (73)
193 PF12719 Cnd3: Nuclear condens 96.0 0.034 7.3E-07 53.2 8.6 114 328-447 26-147 (298)
194 PF13764 E3_UbLigase_R4: E3 ub 95.9 1.2 2.6E-05 48.1 20.4 209 158-381 115-360 (802)
195 PF08045 CDC14: Cell division 95.9 0.39 8.4E-06 44.0 14.5 102 133-234 106-209 (257)
196 PF11864 DUF3384: Domain of un 95.9 2.5 5.5E-05 43.2 26.6 253 87-358 42-330 (464)
197 PF02985 HEAT: HEAT repeat; I 95.8 0.017 3.6E-07 33.8 3.5 29 118-147 1-29 (31)
198 KOG1820 Microtubule-associated 95.8 0.19 4.1E-06 53.9 13.7 192 244-445 253-445 (815)
199 PF02985 HEAT: HEAT repeat; I 95.7 0.017 3.6E-07 33.8 3.4 29 329-358 1-29 (31)
200 PF06371 Drf_GBD: Diaphanous G 95.7 0.09 2E-06 46.4 9.6 111 75-188 67-186 (187)
201 PF11707 Npa1: Ribosome 60S bi 95.7 1.3 2.8E-05 43.0 18.3 164 280-444 51-238 (330)
202 KOG2025 Chromosome condensatio 95.7 0.92 2E-05 46.9 17.3 102 286-396 85-189 (892)
203 KOG1243 Protein kinase [Genera 95.6 0.06 1.3E-06 55.2 9.0 192 283-503 327-520 (690)
204 KOG1566 Conserved protein Mo25 95.6 1.3 2.8E-05 41.3 16.5 201 155-358 74-286 (342)
205 PF11864 DUF3384: Domain of un 95.6 3.3 7.1E-05 42.4 30.1 283 88-400 4-330 (464)
206 KOG0413 Uncharacterized conser 95.5 4.4 9.5E-05 43.7 22.1 127 302-445 947-1075(1529)
207 KOG2956 CLIP-associating prote 95.5 0.53 1.2E-05 46.1 14.5 171 219-400 303-477 (516)
208 KOG1820 Microtubule-associated 95.5 0.23 5E-06 53.3 13.2 187 163-358 256-443 (815)
209 PF08045 CDC14: Cell division 95.5 0.52 1.1E-05 43.2 13.7 103 387-503 107-212 (257)
210 KOG3665 ZYG-1-like serine/thre 95.5 1.4 2.9E-05 47.3 18.9 198 267-497 494-696 (699)
211 COG5116 RPN2 26S proteasome re 95.5 0.098 2.1E-06 52.1 9.5 151 124-298 523-674 (926)
212 PF01603 B56: Protein phosphat 95.4 0.45 9.8E-06 47.6 14.5 251 138-401 110-371 (409)
213 PF13764 E3_UbLigase_R4: E3 ub 95.4 2.9 6.3E-05 45.2 20.9 240 243-500 116-408 (802)
214 PF01603 B56: Protein phosphat 95.2 0.95 2.1E-05 45.3 15.8 261 91-366 107-378 (409)
215 PLN03076 ARF guanine nucleotid 95.0 4 8.6E-05 48.3 22.1 264 85-358 1148-1489(1780)
216 PF07814 WAPL: Wings apart-lik 95.0 0.96 2.1E-05 44.5 15.1 241 162-412 23-310 (361)
217 COG5218 YCG1 Chromosome conden 95.0 2.9 6.2E-05 42.5 17.9 109 239-353 86-194 (885)
218 KOG2933 Uncharacterized conser 95.0 0.24 5.2E-06 45.9 9.8 147 243-402 87-236 (334)
219 KOG1993 Nuclear transport rece 94.9 6.2 0.00013 41.7 20.8 318 75-405 527-869 (978)
220 COG5098 Chromosome condensatio 94.9 0.72 1.6E-05 47.4 13.7 167 256-445 908-1078(1128)
221 PF14668 RICTOR_V: Rapamycin-i 94.9 0.14 3E-06 36.8 6.5 65 135-201 4-69 (73)
222 PF11865 DUF3385: Domain of un 94.8 0.23 5.1E-06 42.3 8.9 146 118-272 11-156 (160)
223 PF07814 WAPL: Wings apart-lik 94.7 1.3 2.8E-05 43.5 15.2 264 119-402 23-357 (361)
224 PF11701 UNC45-central: Myosin 94.7 0.48 1E-05 40.3 10.7 136 255-397 16-156 (157)
225 KOG1525 Sister chromatid cohes 94.6 0.82 1.8E-05 51.5 14.7 148 286-444 259-406 (1266)
226 PF06025 DUF913: Domain of Unk 94.6 3.5 7.5E-05 40.7 17.6 143 304-448 78-237 (379)
227 KOG2933 Uncharacterized conser 94.3 0.2 4.4E-06 46.3 7.8 142 288-443 90-234 (334)
228 KOG1949 Uncharacterized conser 94.3 3.2 7E-05 43.0 16.7 184 120-314 177-369 (1005)
229 KOG1993 Nuclear transport rece 94.3 6.7 0.00015 41.5 19.0 218 217-445 629-866 (978)
230 KOG2137 Protein kinase [Signal 94.2 1.4 2.9E-05 45.9 14.2 205 221-444 291-497 (700)
231 PF14500 MMS19_N: Dos2-interac 94.2 4.4 9.6E-05 37.7 16.6 218 122-358 4-237 (262)
232 PF14500 MMS19_N: Dos2-interac 94.2 4.9 0.00011 37.4 18.1 224 163-403 2-240 (262)
233 PF03378 CAS_CSE1: CAS/CSE pro 94.0 2.3 4.9E-05 42.9 15.2 266 172-446 42-327 (435)
234 PF11707 Npa1: Ribosome 60S bi 93.9 6.6 0.00014 38.1 20.6 166 323-499 52-238 (330)
235 PLN03076 ARF guanine nucleotid 93.9 5.1 0.00011 47.5 19.5 268 172-446 1149-1492(1780)
236 PF08506 Cse1: Cse1; InterPro 93.8 1.3 2.8E-05 43.6 12.9 128 258-395 225-370 (370)
237 KOG1822 Uncharacterized conser 93.8 11 0.00024 44.0 21.1 274 162-443 878-1189(2067)
238 PF12830 Nipped-B_C: Sister ch 93.8 1.7 3.6E-05 38.3 12.5 146 75-233 9-168 (187)
239 PF04063 DUF383: Domain of unk 93.7 0.95 2E-05 39.8 10.6 106 295-402 4-134 (192)
240 PF12530 DUF3730: Protein of u 93.6 4.2 9.1E-05 37.2 15.2 203 205-429 3-218 (234)
241 KOG2137 Protein kinase [Signal 93.5 1.9 4.2E-05 44.8 13.8 173 241-425 346-519 (700)
242 KOG1949 Uncharacterized conser 93.5 1.2 2.5E-05 46.1 11.9 186 245-442 175-369 (1005)
243 COG5218 YCG1 Chromosome conden 93.4 0.86 1.9E-05 46.0 10.7 99 286-393 91-192 (885)
244 KOG2999 Regulator of Rac1, req 93.4 1.9 4E-05 43.4 12.9 157 75-235 84-245 (713)
245 PF10363 DUF2435: Protein of u 93.3 0.36 7.8E-06 36.7 6.4 84 75-170 4-87 (92)
246 PF12231 Rif1_N: Rap1-interact 93.2 9.5 0.0002 37.8 19.4 267 173-444 59-353 (372)
247 PF12530 DUF3730: Protein of u 93.2 6.7 0.00015 35.9 17.4 140 119-273 2-151 (234)
248 PF12231 Rif1_N: Rap1-interact 93.1 9.2 0.0002 37.8 17.8 307 84-400 3-352 (372)
249 PF06025 DUF913: Domain of Unk 93.1 2.3 5E-05 41.9 13.4 119 94-213 80-207 (379)
250 PF04063 DUF383: Domain of unk 93.0 0.88 1.9E-05 40.0 9.3 123 255-381 6-157 (192)
251 KOG2611 Neurochondrin/leucine- 92.9 7.4 0.00016 38.7 15.9 233 163-399 14-273 (698)
252 PF01347 Vitellogenin_N: Lipop 92.9 4.4 9.6E-05 43.3 16.5 198 118-350 396-614 (618)
253 PF13251 DUF4042: Domain of un 92.5 2.8 6E-05 36.5 11.5 141 134-274 2-175 (182)
254 KOG1566 Conserved protein Mo25 92.5 9.5 0.00021 35.8 17.8 209 280-502 73-290 (342)
255 PF13251 DUF4042: Domain of un 92.4 3.4 7.3E-05 35.9 11.9 143 302-445 2-176 (182)
256 PF11865 DUF3385: Domain of un 92.3 1.3 2.8E-05 37.8 9.2 38 328-365 10-47 (160)
257 PF14225 MOR2-PAG1_C: Cell mor 92.2 5.8 0.00013 36.9 14.1 215 79-315 12-254 (262)
258 KOG2611 Neurochondrin/leucine- 92.2 12 0.00026 37.2 16.4 132 122-256 16-164 (698)
259 PF03378 CAS_CSE1: CAS/CSE pro 92.2 4.7 0.0001 40.6 14.5 275 118-401 27-325 (435)
260 smart00638 LPD_N Lipoprotein N 92.2 4.4 9.5E-05 42.9 15.2 136 243-398 392-543 (574)
261 PF10363 DUF2435: Protein of u 91.7 1.1 2.3E-05 34.1 7.2 84 288-382 5-88 (92)
262 PF08167 RIX1: rRNA processing 91.6 1.7 3.7E-05 37.3 9.3 112 286-401 25-144 (165)
263 COG5209 RCD1 Uncharacterized p 91.0 1.2 2.6E-05 39.3 7.5 99 302-401 116-219 (315)
264 KOG2999 Regulator of Rac1, req 90.5 10 0.00022 38.4 14.2 165 245-411 84-253 (713)
265 smart00638 LPD_N Lipoprotein N 90.5 14 0.0003 39.1 16.9 236 75-349 312-569 (574)
266 PF08506 Cse1: Cse1; InterPro 90.5 19 0.00042 35.5 17.7 147 282-438 206-370 (370)
267 COG5209 RCD1 Uncharacterized p 90.4 6.2 0.00013 35.0 11.4 101 90-194 116-223 (315)
268 PF06371 Drf_GBD: Diaphanous G 90.2 1.3 2.7E-05 39.0 7.5 82 149-231 96-186 (187)
269 KOG2005 26S proteasome regulat 90.1 18 0.00038 37.7 15.7 255 119-409 454-713 (878)
270 KOG1832 HIV-1 Vpr-binding prot 89.9 3.8 8.3E-05 43.7 11.3 311 86-404 365-777 (1516)
271 PF14225 MOR2-PAG1_C: Cell mor 89.8 17 0.00037 33.8 16.7 179 162-358 66-254 (262)
272 PF08167 RIX1: rRNA processing 89.6 4 8.6E-05 35.1 9.8 116 328-447 25-147 (165)
273 PF12031 DUF3518: Domain of un 89.2 1.6 3.5E-05 39.2 7.0 81 133-214 139-228 (257)
274 PF14726 RTTN_N: Rotatin, an a 88.9 4.1 8.8E-05 31.3 8.2 70 412-495 28-97 (98)
275 KOG0413 Uncharacterized conser 88.6 36 0.00079 37.2 17.2 130 173-315 944-1073(1529)
276 cd03567 VHS_GGA VHS domain fam 88.6 5.7 0.00012 32.9 9.6 74 372-445 39-118 (139)
277 cd03568 VHS_STAM VHS domain fa 88.5 5.4 0.00012 33.2 9.5 73 372-444 38-111 (144)
278 PF01347 Vitellogenin_N: Lipop 88.4 33 0.0007 36.8 18.0 195 161-391 396-613 (618)
279 PF06685 DUF1186: Protein of u 88.1 15 0.00032 33.8 12.7 132 283-420 70-203 (249)
280 cd03572 ENTH_epsin_related ENT 87.9 8.4 0.00018 31.0 9.7 74 415-500 39-121 (122)
281 PF08324 PUL: PUL domain; Int 87.8 6.4 0.00014 36.9 10.9 155 121-278 67-236 (268)
282 KOG0891 DNA-dependent protein 87.8 4.6 0.0001 48.8 11.6 267 84-359 491-764 (2341)
283 KOG1848 Uncharacterized conser 87.7 19 0.0004 40.9 15.0 61 428-496 1070-1130(1610)
284 PF04388 Hamartin: Hamartin pr 87.4 8.9 0.00019 41.1 12.6 157 75-253 5-161 (668)
285 KOG1992 Nuclear export recepto 87.1 47 0.001 35.7 25.4 395 78-502 41-531 (960)
286 PF10274 ParcG: Parkin co-regu 87.1 4.6 0.0001 34.9 8.4 87 371-465 38-125 (183)
287 cd03569 VHS_Hrs_Vps27p VHS dom 86.7 2 4.4E-05 35.7 5.9 74 74-147 41-114 (142)
288 PF10521 DUF2454: Protein of u 86.4 6.4 0.00014 37.2 9.9 72 286-357 119-202 (282)
289 cd03569 VHS_Hrs_Vps27p VHS dom 86.3 6.1 0.00013 32.9 8.6 74 372-445 42-116 (142)
290 cd03568 VHS_STAM VHS domain fa 85.8 4.9 0.00011 33.5 7.8 72 415-498 38-110 (144)
291 KOG1525 Sister chromatid cohes 85.7 39 0.00085 38.8 16.7 73 327-401 258-330 (1266)
292 PF12830 Nipped-B_C: Sister ch 85.7 19 0.00041 31.6 11.9 71 118-194 9-79 (187)
293 COG5101 CRM1 Importin beta-rel 85.3 51 0.0011 34.3 19.2 58 85-147 204-261 (1053)
294 PF12031 DUF3518: Domain of un 85.1 4.1 8.9E-05 36.7 7.2 85 301-386 139-231 (257)
295 cd03572 ENTH_epsin_related ENT 84.8 19 0.00041 29.0 10.8 87 352-443 24-119 (122)
296 KOG0891 DNA-dependent protein 84.3 46 0.00099 40.9 17.2 255 135-402 461-721 (2341)
297 KOG1822 Uncharacterized conser 84.1 58 0.0013 38.6 17.0 231 119-357 878-1126(2067)
298 KOG1992 Nuclear export recepto 83.9 67 0.0015 34.6 18.7 184 240-424 494-705 (960)
299 PF06685 DUF1186: Protein of u 83.8 34 0.00074 31.5 12.9 90 158-259 71-169 (249)
300 PF04869 Uso1_p115_head: Uso1 83.2 44 0.00096 32.0 14.2 154 132-315 52-231 (312)
301 PF04821 TIMELESS: Timeless pr 83.1 41 0.00088 31.5 16.6 187 72-317 11-210 (266)
302 cd03561 VHS VHS domain family; 83.1 11 0.00025 30.9 8.8 74 372-445 38-114 (133)
303 PF08767 CRM1_C: CRM1 C termin 83.0 20 0.00042 34.7 11.7 182 301-499 42-245 (319)
304 smart00288 VHS Domain present 83.0 3.7 8.1E-05 33.7 5.9 74 74-147 37-111 (133)
305 PF10274 ParcG: Parkin co-regu 82.8 27 0.00058 30.3 11.1 72 328-401 38-110 (183)
306 cd03561 VHS VHS domain family; 82.6 5.9 0.00013 32.6 7.0 74 74-147 37-112 (133)
307 KOG2229 Protein required for a 82.6 16 0.00034 36.7 10.6 144 328-494 16-162 (616)
308 cd03567 VHS_GGA VHS domain fam 82.0 4.7 0.0001 33.3 6.1 74 74-147 38-116 (139)
309 PF10521 DUF2454: Protein of u 82.0 17 0.00037 34.3 10.8 116 328-444 119-254 (282)
310 PF14726 RTTN_N: Rotatin, an a 79.9 17 0.00036 27.9 8.0 93 89-184 2-95 (98)
311 KOG1848 Uncharacterized conser 79.1 44 0.00095 38.1 13.5 97 171-272 853-957 (1610)
312 PF13001 Ecm29: Proteasome sta 78.8 86 0.0019 32.5 23.9 161 329-502 320-492 (501)
313 PF12074 DUF3554: Domain of un 78.6 31 0.00068 33.6 11.8 209 116-339 21-255 (339)
314 PF13001 Ecm29: Proteasome sta 77.9 28 0.00062 36.0 11.6 213 87-318 250-491 (501)
315 PF12726 SEN1_N: SEN1 N termin 77.7 49 0.0011 36.2 13.9 143 77-234 444-587 (727)
316 smart00288 VHS Domain present 77.4 18 0.00039 29.7 8.2 73 372-444 38-112 (133)
317 PF12463 DUF3689: Protein of u 76.8 32 0.00069 32.7 10.5 79 370-448 94-178 (303)
318 PF04499 SAPS: SIT4 phosphatas 76.6 22 0.00048 36.4 10.1 85 361-445 52-150 (475)
319 PF08324 PUL: PUL domain; Int 76.5 5.1 0.00011 37.6 5.4 155 77-234 66-233 (268)
320 PF00790 VHS: VHS domain; Int 76.4 42 0.00091 27.8 10.2 70 415-496 43-116 (140)
321 KOG0301 Phospholipase A2-activ 76.0 1.1E+02 0.0024 32.2 15.7 157 132-297 558-727 (745)
322 cd00197 VHS_ENTH_ANTH VHS, ENT 75.8 16 0.00034 29.0 7.3 71 415-497 38-114 (115)
323 PF12074 DUF3554: Domain of un 75.5 83 0.0018 30.6 16.2 195 202-403 22-238 (339)
324 KOG4464 Signaling protein RIC- 75.3 59 0.0013 31.9 11.8 136 204-339 47-198 (532)
325 PF04388 Hamartin: Hamartin pr 75.1 46 0.001 35.8 12.5 81 299-380 81-161 (668)
326 PF00790 VHS: VHS domain; Int 74.3 30 0.00066 28.6 8.9 74 372-445 43-120 (140)
327 KOG1788 Uncharacterized conser 73.9 85 0.0019 35.0 13.6 256 94-358 662-982 (2799)
328 KOG2549 Transcription initiati 72.8 41 0.00089 34.3 10.5 105 75-191 208-329 (576)
329 KOG2213 Apoptosis inhibitor 5/ 72.0 1E+02 0.0022 30.2 19.0 250 173-443 37-314 (460)
330 KOG2085 Serine/threonine prote 71.8 54 0.0012 32.2 10.7 103 131-234 146-250 (457)
331 PF08767 CRM1_C: CRM1 C termin 70.9 58 0.0013 31.4 11.2 185 260-447 43-248 (319)
332 KOG1788 Uncharacterized conser 70.6 66 0.0014 35.8 11.9 279 83-381 476-784 (2799)
333 PF04821 TIMELESS: Timeless pr 70.4 95 0.002 29.1 13.2 62 384-445 133-210 (266)
334 cd08050 TAF6 TATA Binding Prot 69.1 49 0.0011 32.3 10.3 112 243-356 209-338 (343)
335 KOG1924 RhoA GTPase effector D 69.0 1.5E+02 0.0033 31.9 13.7 144 344-496 207-362 (1102)
336 PF11538 Snurportin1: Snurport 68.6 3.6 7.8E-05 25.5 1.5 38 11-49 2-39 (40)
337 PF08711 Med26: TFIIS helical 68.6 14 0.0003 24.5 4.6 35 462-496 13-48 (53)
338 KOG0301 Phospholipase A2-activ 68.4 1.6E+02 0.0036 31.0 14.1 162 255-424 555-726 (745)
339 PLN03205 ATR interacting prote 67.3 1.2E+02 0.0026 29.7 11.9 160 243-403 322-519 (652)
340 KOG2038 CAATT-binding transcri 67.2 1.9E+02 0.004 31.2 16.7 148 73-231 229-408 (988)
341 PF08389 Xpo1: Exportin 1-like 67.0 36 0.00077 28.1 8.0 49 258-310 100-148 (148)
342 KOG0392 SNF2 family DNA-depend 66.8 47 0.001 37.6 10.2 177 217-402 143-327 (1549)
343 smart00509 TFS2N Domain in the 66.4 27 0.00058 25.3 6.0 35 462-496 35-69 (75)
344 KOG2073 SAP family cell cycle 66.3 2.1E+02 0.0046 31.5 15.1 181 196-383 184-377 (838)
345 KOG2199 Signal transducing ada 65.5 49 0.0011 32.2 8.9 72 372-443 46-118 (462)
346 smart00802 UME Domain in UVSB 64.9 50 0.0011 25.9 7.6 80 328-412 11-95 (107)
347 PF11791 Aconitase_B_N: Aconit 63.6 42 0.00091 28.0 7.1 101 245-358 23-123 (154)
348 KOG1832 HIV-1 Vpr-binding prot 63.5 38 0.00082 36.7 8.5 160 107-276 591-776 (1516)
349 KOG2149 Uncharacterized conser 62.5 1.3E+02 0.0027 29.7 11.2 114 245-360 59-172 (393)
350 PF04869 Uso1_p115_head: Uso1 62.4 1.5E+02 0.0033 28.5 15.7 158 243-400 33-231 (312)
351 KOG2149 Uncharacterized conser 61.1 96 0.0021 30.5 10.2 133 287-424 59-192 (393)
352 PF08389 Xpo1: Exportin 1-like 60.6 35 0.00076 28.2 6.8 125 219-353 4-148 (148)
353 KOG2005 26S proteasome regulat 60.3 2.3E+02 0.0051 30.0 14.4 73 117-192 48-128 (878)
354 cd00183 TFIIS_I N-terminal dom 59.4 44 0.00095 24.2 6.1 35 462-496 37-71 (76)
355 PF08064 UME: UME (NUC010) dom 59.2 69 0.0015 25.1 7.6 80 328-412 11-95 (107)
356 PF08216 CTNNBL: Catenin-beta- 59.2 11 0.00023 29.5 2.9 42 136-178 64-105 (108)
357 PF08216 CTNNBL: Catenin-beta- 59.1 11 0.00023 29.4 2.9 42 390-433 65-106 (108)
358 PF09324 DUF1981: Domain of un 58.7 12 0.00026 28.0 3.1 69 200-268 15-83 (86)
359 PF12783 Sec7_N: Guanine nucle 58.2 90 0.002 26.7 9.0 109 89-201 37-158 (168)
360 COG5110 RPN1 26S proteasome re 58.0 2.3E+02 0.005 29.2 16.0 72 330-409 643-714 (881)
361 KOG0889 Histone acetyltransfer 58.0 3.5E+02 0.0075 35.0 15.8 156 241-401 1123-1307(3550)
362 KOG4464 Signaling protein RIC- 57.8 2E+02 0.0044 28.5 13.0 102 342-444 110-229 (532)
363 PF08713 DNA_alkylation: DNA a 57.2 1.2E+02 0.0026 27.0 10.1 140 246-411 53-194 (213)
364 cd03565 VHS_Tom1 VHS domain fa 57.2 1.1E+02 0.0024 25.3 10.2 72 373-444 40-116 (141)
365 PF08713 DNA_alkylation: DNA a 57.0 1.4E+02 0.0031 26.5 11.8 142 119-285 53-196 (213)
366 KOG4524 Uncharacterized conser 56.3 60 0.0013 35.6 8.6 93 75-170 804-899 (1014)
367 cd08050 TAF6 TATA Binding Prot 56.0 1.1E+02 0.0024 29.9 10.1 110 203-313 211-338 (343)
368 PF12054 DUF3535: Domain of un 55.7 1.3E+02 0.0029 30.5 10.9 305 174-491 101-436 (441)
369 cd03565 VHS_Tom1 VHS domain fa 55.1 91 0.002 25.9 8.1 72 415-498 39-115 (141)
370 KOG1988 Uncharacterized conser 55.0 3.2E+02 0.007 30.0 15.4 252 76-358 26-281 (970)
371 PF12726 SEN1_N: SEN1 N termin 54.7 3.3E+02 0.0071 29.9 26.1 114 373-501 443-556 (727)
372 KOG0392 SNF2 family DNA-depend 54.6 2.4E+02 0.0052 32.4 12.8 238 243-500 76-327 (1549)
373 KOG0803 Predicted E3 ubiquitin 54.6 2.9E+02 0.0062 32.4 14.0 198 288-498 43-263 (1312)
374 KOG3132 m3G-cap-specific nucle 54.0 12 0.00025 33.5 2.6 43 10-52 24-66 (325)
375 KOG1410 Nuclear transport rece 52.9 3.1E+02 0.0068 29.2 17.0 307 162-497 7-333 (1082)
376 KOG2073 SAP family cell cycle 52.7 3.6E+02 0.0078 29.9 15.7 178 243-425 189-376 (838)
377 PF04499 SAPS: SIT4 phosphatas 51.2 2.7E+02 0.0058 28.7 12.2 77 403-479 51-128 (475)
378 KOG2085 Serine/threonine prote 50.2 2.4E+02 0.0051 28.0 10.8 239 192-445 167-416 (457)
379 PF06012 DUF908: Domain of Unk 50.0 1.1E+02 0.0024 29.7 9.0 77 133-210 237-324 (329)
380 KOG2199 Signal transducing ada 49.6 64 0.0014 31.4 6.9 73 414-498 45-118 (462)
381 KOG2676 Uncharacterized conser 49.3 25 0.00055 33.6 4.2 63 138-200 376-440 (478)
382 KOG1087 Cytosolic sorting prot 47.4 73 0.0016 32.4 7.4 72 415-498 39-112 (470)
383 PF09324 DUF1981: Domain of un 47.4 61 0.0013 24.2 5.3 66 325-395 14-83 (86)
384 PF09758 FPL: Uncharacterised 47.2 94 0.002 26.0 6.8 123 149-271 15-147 (149)
385 PF12783 Sec7_N: Guanine nucle 47.2 1.8E+02 0.0039 24.8 10.3 80 280-360 67-148 (168)
386 KOG2011 Sister chromatid cohes 47.1 4E+02 0.0087 30.2 13.2 135 338-496 297-433 (1048)
387 PF01417 ENTH: ENTH domain; I 47.0 61 0.0013 26.2 5.8 95 384-499 16-122 (125)
388 KOG0803 Predicted E3 ubiquitin 46.9 5.5E+02 0.012 30.2 16.6 254 75-338 42-330 (1312)
389 KOG2549 Transcription initiati 46.5 3.1E+02 0.0066 28.4 11.3 99 215-314 259-369 (576)
390 COG5095 TAF6 Transcription ini 45.8 2.7E+02 0.0058 26.3 12.8 133 254-398 208-357 (450)
391 smart00567 EZ_HEAT E-Z type HE 44.4 42 0.00092 18.9 3.3 19 344-364 2-20 (30)
392 PF11791 Aconitase_B_N: Aconit 42.6 58 0.0013 27.2 4.8 29 416-444 96-124 (154)
393 KOG2011 Sister chromatid cohes 42.6 2.3E+02 0.005 32.0 10.6 98 380-493 296-394 (1048)
394 KOG1087 Cytosolic sorting prot 42.5 1.4E+02 0.003 30.5 8.5 71 372-442 39-111 (470)
395 PF11229 DUF3028: Protein of u 42.3 4E+02 0.0087 27.4 18.9 209 203-423 98-329 (589)
396 cd00197 VHS_ENTH_ANTH VHS, ENT 41.3 1.8E+02 0.0038 22.9 10.1 70 372-441 38-113 (115)
397 PF12054 DUF3535: Domain of un 41.0 1.2E+02 0.0025 31.0 7.8 78 89-171 102-179 (441)
398 PF12397 U3snoRNP10: U3 small 40.9 1.8E+02 0.004 23.1 9.3 67 118-190 7-75 (121)
399 PF12765 Cohesin_HEAT: HEAT re 39.5 23 0.0005 22.2 1.7 40 309-352 2-41 (42)
400 KOG0889 Histone acetyltransfer 39.4 7.3E+02 0.016 32.4 14.7 298 75-379 985-1327(3550)
401 PF01365 RYDR_ITPR: RIH domain 39.0 97 0.0021 27.6 6.4 96 344-445 76-171 (207)
402 KOG4524 Uncharacterized conser 38.7 1.5E+02 0.0032 32.8 8.3 94 328-424 803-899 (1014)
403 PF07923 N1221: N1221-like pro 38.6 47 0.001 31.6 4.4 58 112-170 55-126 (293)
404 PF06012 DUF908: Domain of Unk 37.5 1.6E+02 0.0034 28.6 7.9 59 109-167 255-323 (329)
405 PF12463 DUF3689: Protein of u 37.4 3.3E+02 0.0071 26.1 9.6 83 285-367 94-182 (303)
406 PF07539 DRIM: Down-regulated 36.9 1.8E+02 0.0039 24.1 7.1 81 161-254 18-98 (141)
407 PF06743 FAST_1: FAST kinase-l 36.7 84 0.0018 22.4 4.5 67 222-289 3-69 (71)
408 KOG2213 Apoptosis inhibitor 5/ 36.7 4.3E+02 0.0094 26.1 12.5 53 301-359 39-91 (460)
409 PF12397 U3snoRNP10: U3 small 36.6 2.2E+02 0.0047 22.7 9.4 65 287-358 7-74 (121)
410 PF03130 HEAT_PBS: PBS lyase H 35.8 54 0.0012 18.1 2.7 14 345-358 1-14 (27)
411 PF04510 DUF577: Family of unk 35.6 2.9E+02 0.0063 23.8 11.5 156 330-499 5-165 (174)
412 PF14663 RasGEF_N_2: Rapamycin 34.8 1.1E+02 0.0024 24.3 5.4 47 118-168 9-55 (115)
413 smart00802 UME Domain in UVSB 34.1 1.7E+02 0.0037 22.9 6.2 68 117-189 11-83 (107)
414 PF12243 CTK3: CTD kinase subu 34.1 2.7E+02 0.0059 23.0 9.3 104 375-496 12-117 (139)
415 KOG2140 Uncharacterized conser 34.1 4E+02 0.0086 27.5 9.8 62 372-439 239-300 (739)
416 KOG2038 CAATT-binding transcri 33.7 6.6E+02 0.014 27.4 20.2 103 160-272 304-408 (988)
417 PF09758 FPL: Uncharacterised 33.6 46 0.001 27.8 3.0 123 319-441 17-147 (149)
418 PRK09169 hypothetical protein; 33.0 1.1E+03 0.023 29.7 26.9 15 257-271 329-343 (2316)
419 KOG1410 Nuclear transport rece 32.5 6.6E+02 0.014 27.0 20.3 297 75-399 6-333 (1082)
420 PF13925 Katanin_con80: con80 32.5 2.3E+02 0.005 24.2 7.3 74 200-274 26-99 (164)
421 PF08064 UME: UME (NUC010) dom 32.2 1.9E+02 0.0042 22.5 6.3 68 117-189 11-83 (107)
422 PF07923 N1221: N1221-like pro 30.6 61 0.0013 30.8 3.8 54 371-424 60-126 (293)
423 KOG2021 Nuclear mRNA export fa 30.5 7.4E+02 0.016 27.0 22.3 77 111-191 179-262 (980)
424 KOG2021 Nuclear mRNA export fa 28.6 8E+02 0.017 26.8 23.4 92 87-187 206-306 (980)
425 KOG2081 Nuclear transport regu 28.3 7E+02 0.015 26.0 23.7 298 76-401 155-496 (559)
426 PF10257 RAI16-like: Retinoic 27.6 6E+02 0.013 25.0 12.1 130 280-412 3-169 (353)
427 cd01882 BMS1 Bms1. Bms1 is an 27.0 23 0.0005 32.2 0.2 24 27-50 10-33 (225)
428 PF01365 RYDR_ITPR: RIH domain 26.4 1E+02 0.0022 27.5 4.3 96 132-233 75-170 (207)
429 cd06561 AlkD_like A new struct 26.4 2.7E+02 0.0059 24.3 7.1 74 289-369 108-181 (197)
430 PF04510 DUF577: Family of unk 25.6 4.4E+02 0.0095 22.7 10.9 150 289-444 6-165 (174)
431 PF04118 Dopey_N: Dopey, N-ter 25.4 6.1E+02 0.013 24.3 12.1 99 246-354 99-197 (307)
432 KOG4231 Intracellular membrane 25.3 46 0.00099 33.6 1.9 68 331-399 331-398 (763)
433 PF04064 DUF384: Domain of unk 24.8 2.3E+02 0.0051 19.3 6.0 43 461-503 11-54 (58)
434 PF08623 TIP120: TATA-binding 24.7 2E+02 0.0044 24.7 5.5 76 258-338 41-116 (169)
435 PF08454 RIH_assoc: RyR and IP 23.7 2.6E+02 0.0057 22.0 5.6 40 299-338 66-106 (109)
436 PF06367 Drf_FH3: Diaphanous F 23.6 4.8E+02 0.01 22.8 8.1 75 414-495 21-98 (197)
437 KOG2022 Nuclear transport rece 23.5 1.1E+03 0.023 26.4 15.7 135 260-405 483-624 (982)
438 PF15573 Imm27: Immunity prote 23.4 5.5E+02 0.012 23.1 7.9 107 76-215 16-124 (259)
439 cd06561 AlkD_like A new struct 23.4 2.9E+02 0.0063 24.0 6.7 66 331-403 108-173 (197)
440 PF12243 CTK3: CTD kinase subu 22.8 4.4E+02 0.0096 21.8 7.6 99 333-443 13-119 (139)
441 KOG2676 Uncharacterized conser 20.7 1.5E+02 0.0032 28.8 4.1 60 306-366 376-437 (478)
442 KOG2256 Predicted protein invo 20.6 1E+03 0.023 25.3 10.9 35 342-382 441-475 (661)
443 COG5537 IRR1 Cohesin [Cell div 20.2 1E+03 0.023 25.1 13.7 107 291-402 280-388 (740)
No 1
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.9e-90 Score=613.56 Aligned_cols=514 Identities=56% Similarity=0.851 Sum_probs=467.5
Q ss_pred CcchHHHhhhcCC--CCCchHHhhhhhHHHHHHHHHhhHHHHHhhhhhcc-CCCCCCCCCCCccchhhhhhccHHHHHhh
Q 009568 6 NARAEVRRNRYKV--AVDADEGRRRREDNMVEIRKNKREESLLKKRREGL-QSQQFPPPAPASNLNLQTKLESLPAMVAG 82 (532)
Q Consensus 6 ~~~~~~~~~~~k~--~~~~~~~~~~r~~~~~~~Rk~~r~~~~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~lv~~ 82 (532)
.+.++.|+..||+ .+.++|+||+|+++++++||+||+|.+.|||+... .++.+++..+. .+.....+|.+.+.
T Consensus 4 rf~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss~i~m----eqq~~~elp~lt~~ 79 (526)
T COG5064 4 RFVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESSFIPM----EQQFYSELPQLTQQ 79 (526)
T ss_pred ccchHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhccCch----hHHhhhhhHHHHHH
Confidence 4567889999998 48899999999999999999999999999999833 33333333332 12222468999999
Q ss_pred hcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009568 83 VWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAV 162 (532)
Q Consensus 83 L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i 162 (532)
|.|+|.+.+..|+..+|++++.+.+||++.+++.|++|.|++++......-++++|+|+|+|+++++..+++.++++|++
T Consensus 80 l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AV 159 (526)
T COG5064 80 LFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAV 159 (526)
T ss_pred HhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCch
Confidence 99999999999999999999999999999999999999999999544436899999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhh-hhHHHHHHHHHhhhccCCC-CCCCcc
Q 009568 163 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA-KLSMLRNATWTLSNFCRGK-PQPPFD 240 (532)
Q Consensus 163 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~~~~~a~~~L~~L~~~~-~~~~~~ 240 (532)
|.++++|.+++..++++++|+|+|++++++.+|+.+++.|++.+++.++..+. +..+.+++.|+|+|||+++ |.+...
T Consensus 160 PlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~ 239 (526)
T COG5064 160 PLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWS 239 (526)
T ss_pred HHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchH
Confidence 99999999999999999999999999999999999999999999999995433 5799999999999999998 888888
Q ss_pred cccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcch
Q 009568 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 320 (532)
Q Consensus 241 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~ 320 (532)
.+...+|.|.+++.+.|+++..+|||+++|+++++.+.++.+++.|+.++|+.+|.+++..++.+|++.+||++++++.+
T Consensus 240 ~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~Q 319 (526)
T COG5064 240 NISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQ 319 (526)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009568 321 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 400 (532)
Q Consensus 321 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 400 (532)
++.++++|+++.+..+|+++ ...+|++|||+++|+++|+.++++++++.+++|+|+.+|...+..++++||||+.|..+
T Consensus 320 TqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNats 398 (526)
T COG5064 320 TQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATS 398 (526)
T ss_pred eehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999 88999999999999999999999999999999999999999999999999999999999
Q ss_pred CC--CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHh
Q 009568 401 GG--THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ 478 (532)
Q Consensus 401 ~~--~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~ 478 (532)
++ .|+.+++|+++|++++|+++|...|.++..++|+++.++++.|+....... ...|.|..++++.||+++|..+|
T Consensus 399 gg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~--~nin~ya~~vE~Aggmd~I~~~Q 476 (526)
T COG5064 399 GGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYG--KNINIYAVYVEKAGGMDAIHGLQ 476 (526)
T ss_pred cccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhcc--CCccHHHHHHHhcccHHHHHHhh
Confidence 77 578999999999999999999999999999999999999999998765432 16888999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCcccc--ccCCCCCCCCccCCCCCCCCCCCCcc
Q 009568 479 SHDNNEIYEKAVKILETYWLEEDDET--IAAGDGPQPGFPYAGNEVQVPSGGFN 530 (532)
Q Consensus 479 ~~~~~~v~~~a~~il~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (532)
.+.|.+||.+|+.||++||++||.-+ +|+..+ +.|+|+++ +.+.|.|+
T Consensus 477 ~s~n~~iy~KAYsIIe~fFgeeD~vd~lapet~g--~tftfg~~--~~~qg~f~ 526 (526)
T COG5064 477 DSVNRTIYDKAYSIIEKFFGEEDAVDELAPETAG--NTFTFGSN--VNQQGNFN 526 (526)
T ss_pred hccccHHHHHHHHHHHHHcccchhhhhcCccccC--CeeecCCC--ccccCCCC
Confidence 99999999999999999999876443 565544 38999988 45555553
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5e-88 Score=646.98 Aligned_cols=508 Identities=69% Similarity=1.040 Sum_probs=461.2
Q ss_pred hHHHhhhcCC-CCCchHHhhhhhHHHHHHHHHhhHHHHHhhhhhccCCCCCCCCCCCccchhhhhhccHHHHHhhhcCCC
Q 009568 9 AEVRRNRYKV-AVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPAMVAGVWSDD 87 (532)
Q Consensus 9 ~~~~~~~~k~-~~~~~~~~~~r~~~~~~~Rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~s~~ 87 (532)
...|+++||+ +++++|+||||++..+|+||+||+|.+.|||+...+....+.. ..........+..+..+.|++
T Consensus 5 ~~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~S~~ 79 (514)
T KOG0166|consen 5 SNNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELMLDELL-----SDSQSQASNLELMLAALYSDD 79 (514)
T ss_pred hHHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhccccccc-----chhHHHhhhhHHHHHHHhCCC
Confidence 3456667776 6999999999999999999999999999999932211111111 112222334788999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 009568 88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK 167 (532)
Q Consensus 88 ~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ 167 (532)
+..+..++..++++++.+.+|+++.++..|+||.||++|...+++.++.+|+|+|+|||+++++.+..+++.|++|.|+.
T Consensus 80 ~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~ 159 (514)
T KOG0166|consen 80 PQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQ 159 (514)
T ss_pred HHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHH
Confidence 99999999999999999988999999999999999999987666999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC-CCCCcccccchH
Q 009568 168 LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPAL 246 (532)
Q Consensus 168 lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l 246 (532)
++.+++..++++|+|+|+|++++++.+|+.++..|++.+|+.++..+....+.++++|+|+|||+++ |.+.+..+..++
T Consensus 160 Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iL 239 (514)
T KOG0166|consen 160 LLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPIL 239 (514)
T ss_pred HhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999966656689999999999999999 889999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhh
Q 009568 247 PALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT 326 (532)
Q Consensus 247 ~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~ 326 (532)
|.|..++.+.|+++..++||+++||+++.++.++.+++.|+++.|+.+|.+.+..++.+|++++||+++|++.+++.+++
T Consensus 240 p~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~ 319 (514)
T KOG0166|consen 240 PALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVIN 319 (514)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHH
Q 009568 327 YGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQ 406 (532)
Q Consensus 327 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~ 406 (532)
+|++|.|..+|..++...++++|||+|+||++|++++++.+++.|++|.|+.+|+.++.++|++|+||++|++.++++++
T Consensus 320 ~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~q 399 (514)
T KOG0166|consen 320 SGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQ 399 (514)
T ss_pred cChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHH
Confidence 99999999999955477799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHH
Q 009568 407 IKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIY 486 (532)
Q Consensus 407 ~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~ 486 (532)
..+|++.|++++|+++|...|.+++.+++++|.+|++.++.....+ . ++++.+++++||+++++.||+|+|++||
T Consensus 400 i~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~----~-n~~~~~IEe~ggldkiE~LQ~hen~~Iy 474 (514)
T KOG0166|consen 400 IKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRG----T-NPLAIMIEEAGGLDKIENLQSHENEEIY 474 (514)
T ss_pred HHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhcccc----c-cHHHHHHHHccChhHHHHhhccccHHHH
Confidence 9999999999999999999999999999999999999999875431 2 8899999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCccccccCCCCCCCCccCCCCCCCCCCCCccC
Q 009568 487 EKAVKILETYWLEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNF 531 (532)
Q Consensus 487 ~~a~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (532)
++|..||++||++|++++....+ ..+|.|..+ .|.|+|||
T Consensus 475 ~~A~~II~~yf~~e~~~~~~~~~--~~~~~~~~~---~~~~~f~f 514 (514)
T KOG0166|consen 475 KKAYKIIDTYFSEEDDEDDQQPT--TSQFTFQVQ---APDGGFNF 514 (514)
T ss_pred HHHHHHHHHhcCCCccccccccc--ccccccCCC---CCCCCCCC
Confidence 99999999999988655422211 125555533 68899999
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-43 Score=339.88 Aligned_cols=368 Identities=26% Similarity=0.412 Sum_probs=330.2
Q ss_pred ccHHHHHhhhcC-CChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009568 74 ESLPAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (532)
Q Consensus 74 ~~l~~lv~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 152 (532)
+.+|.+|+.|.. .++.++++|+++|.+++++. ....+.+++.|.+|.|+.++.+++ .+++..|+|+|+|++.+++.+
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHH
Confidence 789999999984 55899999999999999985 677888999999999999999999 999999999999999999999
Q ss_pred HHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhcc
Q 009568 153 TKVVIDHGAVPIFVKLLASPSD-DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC 231 (532)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~ 231 (532)
++.+++.|++++|+.++...+. .+.++++|+|.|+|.+....-..-.-..+++.|..++ ++.|++++..+||++++|+
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999988654 7889999999999976521122222344789999999 8999999999999999999
Q ss_pred CCC-CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhC-CCCccchhhHHHH
Q 009568 232 RGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLIPALRT 309 (532)
Q Consensus 232 ~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~al~~ 309 (532)
.+. +..+.....+++|.|+.+|.+.++.++..|+++++|++.+++.+.+.+++.|+++.|..++. ++...++..|+|+
T Consensus 266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~ 345 (514)
T KOG0166|consen 266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT 345 (514)
T ss_pred cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence 887 45556667899999999999999999999999999999999999999999999999999998 5677799999999
Q ss_pred HHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCchhHH
Q 009568 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAEFDIK 388 (532)
Q Consensus 310 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 388 (532)
|+||+.|+..+.+.+++.|++|.|+.+|++. +.++|++|+|+++|++. ++++++.++++.|+++.|+.+|...|.++.
T Consensus 346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii 424 (514)
T KOG0166|consen 346 ISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKII 424 (514)
T ss_pred HHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHH
Confidence 9999999999999999999999999999999 89999999999999998 789999999999999999999988899999
Q ss_pred HHHHHHHHHhhcCCC-------HHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568 389 KEAAWAISNATSGGT-------HEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG 445 (532)
Q Consensus 389 ~~a~~aL~nl~~~~~-------~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (532)
..++.+|.|+...+. .....++-+.|+++.+-.+=.+.+.++...|...+...+...
T Consensus 425 ~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 425 LVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 999999999986442 233455567899999998888899999999999998887654
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=6.6e-43 Score=310.89 Aligned_cols=365 Identities=25% Similarity=0.360 Sum_probs=321.1
Q ss_pred hccHHHHHhhhc-CCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009568 73 LESLPAMVAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE 151 (532)
Q Consensus 73 ~~~l~~lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 151 (532)
-+.+|++++.+. ....-.+++|+++|.+++++. ....+.+++.|.+|.|+++|.+++ .+++.+++|+|+|++.+++.
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~ 190 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEG 190 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchh
Confidence 368999999995 555668999999999999986 677778899999999999999998 89999999999999999999
Q ss_pred hHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhh
Q 009568 152 NTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS 228 (532)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~ 228 (532)
+++.+++.|++.+++.++.+ .+..+.+.+.|+|.|+|... |.--...+ ...++.|.+++ .+.|+++...|||+++
T Consensus 191 ~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i-sqalpiL~KLi-ys~D~evlvDA~WAiS 268 (526)
T COG5064 191 CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI-SQALPILAKLI-YSRDPEVLVDACWAIS 268 (526)
T ss_pred HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH-HHHHHHHHHHH-hhcCHHHHHHHHHHHH
Confidence 99999999999999999877 34688999999999999643 32222222 22588888888 8999999999999999
Q ss_pred hccCCC-CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHH
Q 009568 229 NFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPAL 307 (532)
Q Consensus 229 ~L~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al 307 (532)
+|+.++ .........++.+.|+.+|.+++..++..+++.++|+..+++.+.+.+++.|+++.+..+|.++...++..||
T Consensus 269 YlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaC 348 (526)
T COG5064 269 YLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEAC 348 (526)
T ss_pred HhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhh
Confidence 999987 4444455577888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC---CHHHHHHHHHcCCHHHHHHHHhcCc
Q 009568 308 RTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG---NRDQIQAVIDAGLVGPLVNLLQNAE 384 (532)
Q Consensus 308 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~i~~L~~ll~~~~ 384 (532)
|+++|++.++.++.+++++.+++|.|+++|.+. +-.++++|||+++|.+.| .|+.++++++.|++.+|+.+|...+
T Consensus 349 WTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~d 427 (526)
T COG5064 349 WTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVD 427 (526)
T ss_pred eeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccC
Confidence 999999999999999999999999999999988 999999999999999973 6899999999999999999999988
Q ss_pred hhHHHHHHHHHHHhhcCCCH----------HHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 009568 385 FDIKKEAAWAISNATSGGTH----------EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL 442 (532)
Q Consensus 385 ~~v~~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~ 442 (532)
.++-..++.++.|+...|.. ....++-+.|+++.+-.+-++.+..+-..|..++..+|
T Consensus 428 Nkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fF 495 (526)
T COG5064 428 NKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFF 495 (526)
T ss_pred ccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHc
Confidence 88888999999999876632 23344445899999999999999999888888877776
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=3.3e-40 Score=362.23 Aligned_cols=406 Identities=22% Similarity=0.252 Sum_probs=344.3
Q ss_pred hccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009568 73 LESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (532)
Q Consensus 73 ~~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 152 (532)
-+.+|.+++.|.++++..+..|+..+.+++... ..++..+++.|+||.|+++|.+++++.+|++|+|+|++|+.+++++
T Consensus 188 aGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~ 266 (2102)
T PLN03200 188 AGGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEA 266 (2102)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHH
Confidence 368999999999999999999999998887753 4578889999999999999987654799999999999999999999
Q ss_pred HHHHHhCCChHHHHHhhCCCC---------HHHHHHHHHHHHHhhCCCch-----------hHHH---HHhcCChHHHHH
Q 009568 153 TKVVIDHGAVPIFVKLLASPS---------DDVREQAVWALGNVAGDSPR-----------CRDL---VLSQGALIPLLA 209 (532)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~~~---------~~v~~~a~~~L~nl~~~~~~-----------~~~~---~~~~~~l~~L~~ 209 (532)
+..+++.|+++.|+.++.+++ ..++++|+|+|+|||++.+. .|+. ....|++.+++.
T Consensus 267 r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~ 346 (2102)
T PLN03200 267 KQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALM 346 (2102)
T ss_pred HHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence 999999999999999998654 34699999999999987543 2222 234577788877
Q ss_pred HhhhhhhhHHH----HHHHHHhhhccCCC-CCCCcc-------------------cccchHHHHHHhhcCCCHHHHHHHH
Q 009568 210 QLNERAKLSML----RNATWTLSNFCRGK-PQPPFD-------------------QVRPALPALAQLVHSNDEEVLTDAC 265 (532)
Q Consensus 210 ll~~~~~~~~~----~~a~~~L~~L~~~~-~~~~~~-------------------~~~~~l~~L~~lL~~~d~~v~~~a~ 265 (532)
++. ..+.... ..++|+|.+|++++ +..... ...++++.|+.++...+.+++.+++
T Consensus 347 l~d-~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av 425 (2102)
T PLN03200 347 VFD-SSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELI 425 (2102)
T ss_pred hcC-CchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHH
Confidence 773 3333333 35789999999987 333121 1135667888899989999999999
Q ss_pred HHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhH
Q 009568 266 WALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSI 345 (532)
Q Consensus 266 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v 345 (532)
|+|++++.+..+..+.+.+.|+++.|+.+|.+++..++..|+++|+|++.+++.++..++++|++|.|+++|.++ +..+
T Consensus 426 ~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~i 504 (2102)
T PLN03200 426 RALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKA 504 (2102)
T ss_pred HHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHH
Confidence 999999999999999999999999999999999999999999999999999988888999999999999999998 9999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH-HcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcC
Q 009568 346 KKEACWTISNITAGNRDQIQAVI-DAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV 424 (532)
Q Consensus 346 ~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~ 424 (532)
+++|+|+|+|++.+.++ ++.++ +.|+++.|+++|.++++++++.|+|+|.|++..++.+. ++.++.+|.
T Consensus 505 qeeAawAL~NLa~~~~q-ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~---------I~~Lv~LLl 574 (2102)
T PLN03200 505 KEDSATVLWNLCCHSED-IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT---------ISQLTALLL 574 (2102)
T ss_pred HHHHHHHHHHHhCCcHH-HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH---------HHHHHHHhc
Confidence 99999999999986444 55555 78999999999999999999999999999998776553 467888899
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCc
Q 009568 425 CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEED 501 (532)
Q Consensus 425 ~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~~ 501 (532)
++++.++..++++|.+++...+.... ........||++.|..|+.|+++++|+.|.++|.+||....
T Consensus 575 sdd~~~~~~aL~vLgnIlsl~~~~d~----------~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~ 641 (2102)
T PLN03200 575 GDLPESKVHVLDVLGHVLSVASLEDL----------VREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQ 641 (2102)
T ss_pred CCChhHHHHHHHHHHHHHhhcchhHH----------HHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCh
Confidence 99999999999999999886654321 12234457999999999999999999999999999998654
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.5e-38 Score=349.31 Aligned_cols=416 Identities=19% Similarity=0.201 Sum_probs=368.5
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 153 (532)
+.++.|+.+|...+.+.|..++++|..++.++ ...++.+++.|++|.|+++|.+++ +.+|..|+|+|++++.++++++
T Consensus 404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr 481 (2102)
T PLN03200 404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK 481 (2102)
T ss_pred cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence 45788999999999999999999999998764 566888999999999999999988 8999999999999999899999
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (532)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~ 233 (532)
..+++.|++|.|+++|.+++..+++.|+|+|+|++.+.+..+..+...|++++|+.+| .+.+...+..++|+|.+|+..
T Consensus 482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998888888888899999999999 667889999999999999753
Q ss_pred CCCCC--------------------------------------cccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 009568 234 KPQPP--------------------------------------FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT 275 (532)
Q Consensus 234 ~~~~~--------------------------------------~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~ 275 (532)
..... .....++++.|+.++.++++.++..|+|+|.+++.+.
T Consensus 561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~ 640 (2102)
T PLN03200 561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR 640 (2102)
T ss_pred cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 21100 0012578999999999999999999999999999999
Q ss_pred hhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCc-chhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHH
Q 009568 276 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD-FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS 354 (532)
Q Consensus 276 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 354 (532)
.+..+.++..|++++++.+|.+.+..++..++++|+|++.+.. .+...+++.|+++.|+.+|++. +..++..|+.+|.
T Consensus 641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa 719 (2102)
T PLN03200 641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA 719 (2102)
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence 9988999999999999999999999999999999999997544 3455678999999999999998 9999999999999
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHH-H-HHHHHcCChHHHHhhcCCCCHHHHH
Q 009568 355 NITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQ-I-KYLVREGCIKPLCDLFVCPDPRIVT 432 (532)
Q Consensus 355 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~-~-~~l~~~~~l~~L~~lL~~~d~~v~~ 432 (532)
|++... +....+.+.|+++.|+++|.+++++.|++|+|+|.+++...+.++ . .++...|.+.+|+++|+..|.+...
T Consensus 720 nLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~ 798 (2102)
T PLN03200 720 NLLSDP-EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSA 798 (2102)
T ss_pred HHHcCc-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhh
Confidence 999864 456677788999999999999999999999999999999877554 3 6667889999999999999988777
Q ss_pred H--HHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCC
Q 009568 433 V--CLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEE 500 (532)
Q Consensus 433 ~--al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~ 500 (532)
. ++++|..+.+.++.... ..++|...++.+++++.|.....|.+|.++++|.+||+++-.+.
T Consensus 799 ~~~al~~l~~l~~~~~~~~~------~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~ 862 (2102)
T PLN03200 799 TSEALEALALLARTKGGANF------SHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQ 862 (2102)
T ss_pred HHHHHHHHHHHHhhcccCCC------CCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccC
Confidence 6 99999999986554432 56789999999999999966669999999999999999997653
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.3e-29 Score=228.23 Aligned_cols=364 Identities=22% Similarity=0.243 Sum_probs=315.0
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 153 (532)
+.+..+.-.+++.++.++..|..++.+++-. ....-.++..+++..|+.-+..+. .++|..+..|++|++.- ++++
T Consensus 85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn--~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~-d~nk 160 (550)
T KOG4224|consen 85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVN--MENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATF-DSNK 160 (550)
T ss_pred hhhhHHHHHHhCcchhhhhhhhhhhccceec--cCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhcc-ccch
Confidence 4567788889999999999999999998864 344444567777777776666666 69999999999999984 7888
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (532)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~ 233 (532)
..+...|++.++..+-++.+..++..+..+|.|+. +..+.|..+...|+++.|+.++ ++.++.++..++.++++++-+
T Consensus 161 ~kiA~sGaL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaVd 238 (550)
T KOG4224|consen 161 VKIARSGALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAVD 238 (550)
T ss_pred hhhhhccchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhhh
Confidence 89999999999999888899999999999999995 4456788999999999999999 889999999999999999987
Q ss_pred CCCCCcccc--cchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHH
Q 009568 234 KPQPPFDQV--RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 311 (532)
Q Consensus 234 ~~~~~~~~~--~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~ 311 (532)
......... ..++|.|+.++.++++.++..|..+|++++.... +...++++|.+|.++.+|+++........+.|+.
T Consensus 239 ~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIr 317 (550)
T KOG4224|consen 239 RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELLQSPMGPLILASVACIR 317 (550)
T ss_pred HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHh
Confidence 633333333 3499999999999999999999999999997644 5567899999999999999998888899999999
Q ss_pred HhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHH
Q 009568 312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEA 391 (532)
Q Consensus 312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 391 (532)
|++-..- ..-.+.+.|++..|+.+|....+.+++-.|..+|.|++.........+.+.|.+|.+..++.++...+|.+.
T Consensus 318 nisihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqsei 396 (550)
T KOG4224|consen 318 NISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEI 396 (550)
T ss_pred hcccccC-cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHH
Confidence 9987654 334678899999999999988567799999999999999778888889999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 009568 392 AWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA 447 (532)
Q Consensus 392 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 447 (532)
..++..++.. .....+|.+.|+++.|+.++.+...+++..+..+|.|+...-+.
T Consensus 397 sac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~ 450 (550)
T KOG4224|consen 397 SACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH 450 (550)
T ss_pred HHHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHH
Confidence 9999999884 35678889999999999999999999999999999999865443
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.6e-28 Score=221.14 Aligned_cols=364 Identities=20% Similarity=0.266 Sum_probs=316.3
Q ss_pred hhhccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh
Q 009568 71 TKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS 150 (532)
Q Consensus 71 ~~~~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~ 150 (532)
..+..+..++..+.++.-++|..++.++.+++.. +.....+...|.+.++.++-++.+ ..+|..+..+|.|++. +.
T Consensus 123 v~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~ 198 (550)
T KOG4224|consen 123 VSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SR 198 (550)
T ss_pred EeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hh
Confidence 3456778888888888888999999999999876 566667889999999999878877 8999999999999998 88
Q ss_pred hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcC--ChHHHHHHhhhhhhhHHHHHHHHHhh
Q 009568 151 ENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG--ALIPLLAQLNERAKLSMLRNATWTLS 228 (532)
Q Consensus 151 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~--~l~~L~~ll~~~~~~~~~~~a~~~L~ 228 (532)
++++.++..|++|.|+.++++.+..++..|+.+++||+.+.. .|+.+.+.+ .++.|+.++ .+.++.++..+..+|.
T Consensus 199 EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALr 276 (550)
T KOG4224|consen 199 ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALR 276 (550)
T ss_pred hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987654 577888887 899999999 8889999999999999
Q ss_pred hccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCC-ccchhhHH
Q 009568 229 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS-PSVLIPAL 307 (532)
Q Consensus 229 ~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~al 307 (532)
+|+.+..........+.+|.++++|+++-.........|+.|++..+-. ...+.+.|++.+|+.+|...+ .+++..|.
T Consensus 277 nlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplN-e~lI~dagfl~pLVrlL~~~dnEeiqchAv 355 (550)
T KOG4224|consen 277 NLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLN-EVLIADAGFLRPLVRLLRAGDNEEIQCHAV 355 (550)
T ss_pred hhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCc-ccceecccchhHHHHHHhcCCchhhhhhHH
Confidence 9999876666666789999999999998888888888899999865432 356789999999999998864 55999999
Q ss_pred HHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhH
Q 009568 308 RTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDI 387 (532)
Q Consensus 308 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 387 (532)
.+|.|++.........+.++|.+|.+..++.+. .-.++.+...+++.++.. ......+.+.|++|.|+.++.+.+.++
T Consensus 356 stLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev 433 (550)
T KOG4224|consen 356 STLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEV 433 (550)
T ss_pred HHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhh
Confidence 999999998888889999999999999999998 889999999999998864 344668889999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHH------cCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568 388 KKEAAWAISNATSGGTHEQIKYLVR------EGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG 445 (532)
Q Consensus 388 ~~~a~~aL~nl~~~~~~~~~~~l~~------~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (532)
+.+|+.||.|+++. .+....+++ .|+-..|..++.+.+..++..+.|.+..++...
T Consensus 434 ~gNaAaAL~Nlss~--v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 434 RGNAAAALINLSSD--VEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDH 495 (550)
T ss_pred cccHHHHHHhhhhh--hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 99999999999984 455555554 345567888888999999999999999998764
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.95 E-value=2.4e-24 Score=220.02 Aligned_cols=395 Identities=21% Similarity=0.182 Sum_probs=318.9
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009568 77 PAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVV 156 (532)
Q Consensus 77 ~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i 156 (532)
.++-..+... ..+...+...|.+++.. ......+.+.|+++.|+++|++++ .++...++++|.+++. ..+++..+
T Consensus 253 kk~~~l~~kQ-eqLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m 327 (708)
T PF05804_consen 253 KKLQTLIRKQ-EQLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEM 327 (708)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 3344444443 44555778889998864 455667889999999999999987 8999999999999999 77899999
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCC
Q 009568 157 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ 236 (532)
Q Consensus 157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~ 236 (532)
.+.|+++.|.+++.+++..++..++++|.|++.+. ..|..+++.|++|.|+.+|. + +..+..++.+|.++|.....
T Consensus 328 ~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~-~~R~~mV~~GlIPkLv~LL~-d--~~~~~val~iLy~LS~dd~~ 403 (708)
T PF05804_consen 328 AESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDP-ELRSQMVSLGLIPKLVELLK-D--PNFREVALKILYNLSMDDEA 403 (708)
T ss_pred HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCH-HHHHHHHHCCCcHHHHHHhC-C--CchHHHHHHHHHHhccCHhh
Confidence 99999999999999999999999999999997665 46999999999999999994 2 34556789999999998766
Q ss_pred CCcccccchHHHHHHhhcC-CCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhc
Q 009568 237 PPFDQVRPALPALAQLVHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 315 (532)
Q Consensus 237 ~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~ 315 (532)
.......+++|.+++++.. +++.+...+++.+.|++.... +.+.+.+.+.++.|+........ ...+.++.|++.
T Consensus 404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~ 479 (708)
T PF05804_consen 404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR-NAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQ 479 (708)
T ss_pred HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH-HHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHh
Confidence 6666667899999987654 567777888899999987654 55788888899999988755433 224578999998
Q ss_pred CCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--chhHHHHHHH
Q 009568 316 GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAW 393 (532)
Q Consensus 316 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~ 393 (532)
+++. .+..+. +.+..|+.++..+.+++...++..+|+|++..+.+..+.+-+.+++|.|...|..+ ++++..+++.
T Consensus 480 h~~~-~k~~f~-~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi 557 (708)
T PF05804_consen 480 HDGP-LKELFV-DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVI 557 (708)
T ss_pred cCch-HHHHHH-HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHH
Confidence 7753 333333 46777778887765789999999999999976555444555789999999999875 5689999999
Q ss_pred HHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccH
Q 009568 394 AISNATSGGTHEQIKYLVREGCIKPLCDLFVC--PDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGL 471 (532)
Q Consensus 394 aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~--~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 471 (532)
.++.++. ++.....+.+.|+++.|+++|+. +|.+++.+++.+++.++...+. ....+.+.+..
T Consensus 558 ~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t-------------r~~ll~~~~~~ 622 (708)
T PF05804_consen 558 LLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET-------------REVLLKETEIP 622 (708)
T ss_pred HHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH-------------HHHHHhccchH
Confidence 9999987 66777888899999999999975 6789999999999999987554 24567788999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCCCCc
Q 009568 472 EKIENLQSHDNNEIYEKAVKILETYWLEED 501 (532)
Q Consensus 472 ~~l~~L~~~~~~~v~~~a~~il~~~~~~~~ 501 (532)
..+..|.++.|++|++.|...++-.-+.++
T Consensus 623 ~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 623 AYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 999999999999999888777765544443
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.94 E-value=2.3e-24 Score=220.24 Aligned_cols=382 Identities=19% Similarity=0.224 Sum_probs=310.0
Q ss_pred hccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009568 73 LESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (532)
Q Consensus 73 ~~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 152 (532)
-+.++.|++.|.+++.++...++..|.++.-. ......+.+.|++|.|++++.+++ .+++..|+++|.|++. +++.
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d~~~ 364 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-DPEL 364 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-CHHH
Confidence 36899999999999999999999999999765 456788899999999999999988 8999999999999999 8889
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568 153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (532)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~ 232 (532)
+..+++.|++|.|+.+|.++ ..+..|+.+|.+++.+. ..|..+...++++.+++++...+++.+...+++++.||+.
T Consensus 365 R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd-~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~ 441 (708)
T PF05804_consen 365 RSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDD-EARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLAL 441 (708)
T ss_pred HHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCH-hhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhc
Confidence 99999999999999999754 46677999999998755 4788999999999999998777777788889999999999
Q ss_pred CCCCCCcccccchHHHHHHhhcC-CCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC-CCccchhhHHHHH
Q 009568 233 GKPQPPFDQVRPALPALAQLVHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTV 310 (532)
Q Consensus 233 ~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L 310 (532)
+..........++++.|++.... .|+- .+..+.|++..++.... .+. +++..|+.++.. .+++....++.+|
T Consensus 442 ~~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~-~f~-~~i~~L~~~v~~~~~ee~~vE~LGiL 515 (708)
T PF05804_consen 442 NKRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKE-LFV-DFIGDLAKIVSSGDSEEFVVECLGIL 515 (708)
T ss_pred CHHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHH-HHH-HHHHHHHHHhhcCCcHHHHHHHHHHH
Confidence 98655555556788888766544 4433 33578888877644333 332 577788888766 4678999999999
Q ss_pred HHhhcCCcchhHHHhhcCchHHHHHHhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--chhH
Q 009568 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDI 387 (532)
Q Consensus 311 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v 387 (532)
+|+...+....+.+.+.+++|.+..+|..+. .+++.-+++..+|.++. ++.....+.+.|+++.|+.+|... |.++
T Consensus 516 aNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~ 594 (708)
T PF05804_consen 516 ANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEI 594 (708)
T ss_pred HhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHH
Confidence 9999876666666667899999999997542 45789999999999986 466677777999999999999875 7899
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHH-HcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHH
Q 009568 388 KKEAAWAISNATSGGTHEQIKYLV-REGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVE 466 (532)
Q Consensus 388 ~~~a~~aL~nl~~~~~~~~~~~l~-~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (532)
....++++..+..+. +.+..++ +.+++..|++++.++++.++..|-.+|.-+....+.+.. ....-....-
T Consensus 595 VlQil~~f~~ll~h~--~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~------ri~~~kF~~h 666 (708)
T PF05804_consen 595 VLQILYVFYQLLFHE--ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAE------RIRREKFRWH 666 (708)
T ss_pred HHHHHHHHHHHHcCh--HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHH------HhhHHHHHHH
Confidence 999999999999974 4455655 578999999999999999999999999999988877654 2232334444
Q ss_pred HhccHHHHHH
Q 009568 467 EAEGLEKIEN 476 (532)
Q Consensus 467 ~~g~~~~l~~ 476 (532)
...+++.++.
T Consensus 667 N~~WLe~v~~ 676 (708)
T PF05804_consen 667 NAQWLEMVES 676 (708)
T ss_pred HHHHHHHHhc
Confidence 5556666654
No 11
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.7e-20 Score=183.84 Aligned_cols=390 Identities=21% Similarity=0.299 Sum_probs=316.4
Q ss_pred cHHHHHhhhcCC-ChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568 75 SLPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (532)
Q Consensus 75 ~l~~lv~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 153 (532)
.+..|++.|+.. |+..|++|+..|..+++..+......+.-..++|.|+.+|+...+.++...|+++|++++.--|...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 568888888866 9999999999999999987666666666667999999999999889999999999999999889999
Q ss_pred HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568 154 KVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (532)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~ 232 (532)
..+++.++||.|+.-|.. +..++.++++.+|-.|+...+. .+++.|++...+..| +--...+++.|+.+..|+|.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 999999999999986655 7899999999999999877653 678999999999999 77789999999999999999
Q ss_pred CCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC---ChhHHHHHHHhCchHHHHHhhCCC----Cccchhh
Q 009568 233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLGHP----SPSVLIP 305 (532)
Q Consensus 233 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~----~~~v~~~ 305 (532)
.-+...+..+...+|.|..+|...|.+..+.+|-|+.+++++ .++..+.+...+++....++|.-. +..+...
T Consensus 324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~ 403 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG 403 (1051)
T ss_pred cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence 988888888999999999999999999999999999999854 567778899999999999998654 3345666
Q ss_pred HHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCC-------------chhHHHH------------------------
Q 009568 306 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH-------------KKSIKKE------------------------ 348 (532)
Q Consensus 306 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-------------~~~v~~~------------------------ 348 (532)
.++.+..++++.+-....++..++...|..+|.... .|.-..+
T Consensus 404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~ 483 (1051)
T KOG0168|consen 404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSL 483 (1051)
T ss_pred HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhh
Confidence 788889999888877777777788887777775320 0000000
Q ss_pred ----------HHH--------------HHHHHhc--------------------------CCHHHHHHHHHcCCHHHHHH
Q 009568 349 ----------ACW--------------TISNITA--------------------------GNRDQIQAVIDAGLVGPLVN 378 (532)
Q Consensus 349 ----------a~~--------------~L~nl~~--------------------------~~~~~~~~l~~~~~i~~L~~ 378 (532)
+.| +.+.+.. ..|+..+.++. .++|.|++
T Consensus 484 ~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLve 562 (1051)
T KOG0168|consen 484 IYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVE 562 (1051)
T ss_pred hcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHH
Confidence 000 0001111 11233333333 37899999
Q ss_pred HHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHc-CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCc
Q 009568 379 LLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVRE-GCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATA 456 (532)
Q Consensus 379 ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~ 456 (532)
++.+. ++.||..++.||..+....+.+.+..++.+ .+-..+-.+|.++|..|+.-+|....-|++.-
T Consensus 563 VYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKl----------- 631 (1051)
T KOG0168|consen 563 VYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKL----------- 631 (1051)
T ss_pred HHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHh-----------
Confidence 98876 899999999999999999898988887755 55567778999999999999999999888764
Q ss_pred cchHHHHHHHHhccHHHHHHHhcCC
Q 009568 457 DVNQYAQLVEEAEGLEKIENLQSHD 481 (532)
Q Consensus 457 ~~~~~~~~~~~~g~~~~l~~L~~~~ 481 (532)
...|...|.+.|.+..++.|....
T Consensus 632 -pd~F~~~F~REGV~~~v~~L~~~~ 655 (1051)
T KOG0168|consen 632 -PDTFSPSFRREGVFHAVKQLSVDS 655 (1051)
T ss_pred -HHHhhhhHhhhhHHHHHHHHhccC
Confidence 344888999999999999997643
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.82 E-value=5e-18 Score=169.75 Aligned_cols=366 Identities=21% Similarity=0.250 Sum_probs=281.2
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch--hH
Q 009568 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR--CR 195 (532)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~--~~ 195 (532)
-+|..+.+|.+.+ +.+|..|+.-+-.++.++.+.+..+.+.|+|+.|+.+|.+.+.+++.+|+|+|.|+...... .+
T Consensus 234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 4788899999888 89999999999999999999999999999999999999999999999999999999966544 67
Q ss_pred HHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcC--------------CCHHHH
Q 009568 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS--------------NDEEVL 261 (532)
Q Consensus 196 ~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~--------------~d~~v~ 261 (532)
-.+.+.++++.+++++....|.++++.++.+|+||+..+ ..........++.|..-+-. .+..+.
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 788899999999999987789999999999999999984 33444455566666544321 135688
Q ss_pred HHHHHHHHHhccCChhHHHHHHHh-CchHHHHHhhCC------CCccchhhHHHHHHHhhcCCc----------------
Q 009568 262 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLGH------PSPSVLIPALRTVGNIVTGDD---------------- 318 (532)
Q Consensus 262 ~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~~~---------------- 318 (532)
..+..||.|++....+..+.+.+. |.+..|+..+.+ .+......|+.++.|+...-.
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 999999999998666665666544 788888888752 455667778888888864221
Q ss_pred ---------------chhHH----------------------HhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH
Q 009568 319 ---------------FQTQC----------------------IITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNR 361 (532)
Q Consensus 319 ---------------~~~~~----------------------~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 361 (532)
...+. +....++..-..+|..+.++.+.+.++.+|-|++++..
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 00000 11112333334444433377889999999999998532
Q ss_pred ---HHH-HHH-HHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCC------CHHH
Q 009568 362 ---DQI-QAV-IDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP------DPRI 430 (532)
Q Consensus 362 ---~~~-~~l-~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~------d~~v 430 (532)
..+ ..+ .+..++|.|+++++.++..|.+.++.+|.|++.+. .. +.++..++++.|++.|... +.++
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--rn-k~ligk~a~~~lv~~Lp~~~~~~~~sedt 628 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--RN-KELIGKYAIPDLVRCLPGSGPSTSLSEDT 628 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--hh-hhhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence 222 233 36678999999999999999999999999999853 33 3345578999999999753 3578
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhc-CCCHHHHHHHHHHHHHhCCCCc
Q 009568 431 VTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS-HDNNEIYEKAVKILETYWLEED 501 (532)
Q Consensus 431 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~-~~~~~v~~~a~~il~~~~~~~~ 501 (532)
+..++..|.+++..... .+..+-+.+|+++|..|.. ..++.+.+.|..++..++...|
T Consensus 629 v~~vc~tl~niv~~~~~-------------nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 629 VRAVCHTLNNIVRKNVL-------------NAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE 687 (717)
T ss_pred HHHHHHhHHHHHHHhHH-------------HHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999965433 3556667999999999954 5667899999999998887654
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.78 E-value=4.9e-17 Score=162.72 Aligned_cols=362 Identities=20% Similarity=0.229 Sum_probs=276.7
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh--h
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE--N 152 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~--~ 152 (532)
.+|..+.+|.+.++.+|-.|+..+..+..+. +.....+-+.|.||.||.+|.+.. .+++..|+++|.|+..++.. +
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCccc
Confidence 6799999999999999999999999988763 455556678999999999999998 99999999999999997766 8
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh-h------------hhhH
Q 009568 153 TKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE-R------------AKLS 218 (532)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~------------~~~~ 218 (532)
+-.+.+.++|+.++.+|.. .|.++++.+..+|+||++. +.++..++. ..+..|...+.. . .+.+
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccce
Confidence 8899999999999999987 8999999999999999776 334444443 356666654421 1 1367
Q ss_pred HHHHHHHHhhhccCCC--CCCCcccccchHHHHHHhhc------CCCHHHHHHHHHHHHHhccCCh-----hHHH-----
Q 009568 219 MLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQLVH------SNDEEVLTDACWALSYLSDGTN-----DKIQ----- 280 (532)
Q Consensus 219 ~~~~a~~~L~~L~~~~--~~~~~~~~~~~l~~L~~lL~------~~d~~v~~~a~~~L~~l~~~~~-----~~~~----- 280 (532)
+..+++.+|.|++... ....+....|++..|+..++ ..|....+++...+.|++..-. ...+
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~ 469 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI 469 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence 8999999999999854 23334456788888887776 3366777888888888874211 0000
Q ss_pred ---------------------H----------------------HHHhCchHHHHHhh-CCCCccchhhHHHHHHHhhcC
Q 009568 281 ---------------------A----------------------VIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTG 316 (532)
Q Consensus 281 ---------------------~----------------------~~~~~~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~ 316 (532)
. +....++..-..+| .+.++.+.+.++.+|-|++.+
T Consensus 470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~ 549 (717)
T KOG1048|consen 470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG 549 (717)
T ss_pred cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence 0 11111233323333 234567888999999999987
Q ss_pred Ccch----hHHH-hhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC------ch
Q 009568 317 DDFQ----TQCI-ITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA------EF 385 (532)
Q Consensus 317 ~~~~----~~~~-~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~------~~ 385 (532)
.... +..+ ....+++.++.+|... ++.|.+.++.+|.|++.+- ..+.++....++.|++.|... +.
T Consensus 550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d~--rnk~ligk~a~~~lv~~Lp~~~~~~~~se 626 (717)
T KOG1048|consen 550 LWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRDI--RNKELIGKYAIPDLVRCLPGSGPSTSLSE 626 (717)
T ss_pred CCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccCc--hhhhhhhcchHHHHHHhCcCCCCCcCchH
Confidence 6532 2233 5678999999999999 9999999999999999863 235677788999999999764 36
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHh
Q 009568 386 DIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP-DPRIVTVCLEGLENILKV 444 (532)
Q Consensus 386 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~-d~~v~~~al~~L~~l~~~ 444 (532)
++...+|.+|.|++.. +....+.+.+.+.++.|+.+..+. +++..+.+-..|..+=.+
T Consensus 627 dtv~~vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y 685 (717)
T KOG1048|consen 627 DTVRAVCHTLNNIVRK-NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQY 685 (717)
T ss_pred HHHHHHHHhHHHHHHH-hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 8889999999999975 667788889999999999988864 457777777776666444
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.77 E-value=3.3e-15 Score=151.94 Aligned_cols=398 Identities=18% Similarity=0.200 Sum_probs=299.6
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009568 77 PAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVV 156 (532)
Q Consensus 77 ~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i 156 (532)
+.+..+|++.+.+....++..|.+++... .+... ..+..+.|...|.+++ +.++..+++.|.+++..+......+
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l--~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~ 115 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSAL--SPDSL--LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLL 115 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHH--HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHh
Confidence 34778888888888888899999998853 22222 4568899999999998 9999999999999999777778888
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCC-
Q 009568 157 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP- 235 (532)
Q Consensus 157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~- 235 (532)
.+.++++.++.++.+++..+...|+.+|.+++...+.. +.+...+.+..|..++ ...+..++..+..++.+++...+
T Consensus 116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~ 193 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPE 193 (503)
T ss_pred cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHH
Confidence 89999999999999999999999999999999876654 4566777788888888 55566788889999999987763
Q ss_pred CCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCC--c---cchhh-HHHH
Q 009568 236 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS--P---SVLIP-ALRT 309 (532)
Q Consensus 236 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~--~---~v~~~-al~~ 309 (532)
........|+++.++..+.++|.-++..++.++..++. .+...+.+.+.|+++.|..++.+.+ + .+..+ .+..
T Consensus 194 ~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f 272 (503)
T PF10508_consen 194 AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF 272 (503)
T ss_pred HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence 23333446899999999999999999999999999998 4555688999999999999996642 2 22333 3478
Q ss_pred HHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH-HHcC-----CHHHHHHHHhcC
Q 009568 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAV-IDAG-----LVGPLVNLLQNA 383 (532)
Q Consensus 310 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~~-----~i~~L~~ll~~~ 383 (532)
.++++...+....... ..++..+..++.+. ++..+..|.-+++.++.. .+....+ .+.+ ++..+.....++
T Consensus 273 ~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~ 349 (503)
T PF10508_consen 273 FGNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSG 349 (503)
T ss_pred HHHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCC
Confidence 8888875443322111 24555666777777 899999999999999864 5555555 3332 344444455556
Q ss_pred chhHHHHHHHHHHHhhcCCCH---HHH----HHHH---HcCChH-HHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcc
Q 009568 384 EFDIKKEAAWAISNATSGGTH---EQI----KYLV---REGCIK-PLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMG 452 (532)
Q Consensus 384 ~~~v~~~a~~aL~nl~~~~~~---~~~----~~l~---~~~~l~-~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~ 452 (532)
..++|..++.++.++...++. +.+ .... ..+-.. .+..+++.+=++++..++..|..++...-.
T Consensus 350 ~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg----- 424 (503)
T PF10508_consen 350 STELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG----- 424 (503)
T ss_pred chHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH-----
Confidence 778999999999999665432 111 1111 223455 788889888899999999999999875321
Q ss_pred CCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009568 453 TATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 498 (532)
Q Consensus 453 ~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 498 (532)
...+....|.++.+-+=....+.+..+.=.+++..+..
T Consensus 425 --------~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~ 462 (503)
T PF10508_consen 425 --------QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAK 462 (503)
T ss_pred --------HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 24456667777777665667788888887888887763
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.77 E-value=2.6e-15 Score=152.73 Aligned_cols=402 Identities=18% Similarity=0.188 Sum_probs=296.1
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009568 77 PAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVV 156 (532)
Q Consensus 77 ~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i 156 (532)
..+++.|... ...+.++..+..-+.. .+....+ ..+.+..+|++.+ .+....++.+|..+.... .... +
T Consensus 6 ~~~l~~l~~~--~~~~~~L~~l~~~~~~--~~~l~~~----~~~~lf~~L~~~~-~e~v~~~~~iL~~~l~~~-~~~~-l 74 (503)
T PF10508_consen 6 NELLEELSSK--AERLEALPELKTELSS--SPFLERL----PEPVLFDCLNTSN-REQVELICDILKRLLSAL-SPDS-L 74 (503)
T ss_pred HHHHHHHhcc--cchHHHHHHHHHHHhh--hhHHHhc----hHHHHHHHHhhcC-hHHHHHHHHHHHHHHhcc-CHHH-H
Confidence 3445555544 3345566666655443 1212222 2344788888776 777778888888887632 2222 2
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCC
Q 009568 157 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ 236 (532)
Q Consensus 157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~ 236 (532)
..++.+.|...|.++++.++..+++.|++++.++......+.+.++++.++.++ .+++..+...|+.+|..++...+.
T Consensus 75 -~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~ 152 (503)
T PF10508_consen 75 -LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEG 152 (503)
T ss_pred -HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchh
Confidence 446779999999999999999999999999988877778888899999999999 888999999999999999987654
Q ss_pred CCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcC
Q 009568 237 PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316 (532)
Q Consensus 237 ~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~ 316 (532)
.......+.++.|..++..+++.++..++.++.+++..+++....+.+.|+++.++..|.++|.-++..++.+|..++.
T Consensus 153 ~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~- 231 (503)
T PF10508_consen 153 LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE- 231 (503)
T ss_pred HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-
Confidence 4444455668889999988888999999999999999999999999999999999999999888899999999999999
Q ss_pred CcchhHHHhhcCchHHHHHHhcCCCchh-----HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHH
Q 009568 317 DDFQTQCIITYGALPYLLGLLTHSHKKS-----IKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEA 391 (532)
Q Consensus 317 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~-----v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 391 (532)
.+...+++.+.|+++.|..++.+..... .--......++++...+..+.... ..++..+.+++.+.|+..+..|
T Consensus 232 ~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A 310 (503)
T PF10508_consen 232 TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVA 310 (503)
T ss_pred ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHH
Confidence 6667889999999999999997652222 122334566777764444432222 2366677788888899999999
Q ss_pred HHHHHHhhcCCCHHHHHHH-HHc-----CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHH
Q 009568 392 AWAISNATSGGTHEQIKYL-VRE-----GCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLV 465 (532)
Q Consensus 392 ~~aL~nl~~~~~~~~~~~l-~~~-----~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 465 (532)
..+++.+++ +.+....| ... .++..+.........+++..++.++.+++..++...... -.+.....+
T Consensus 311 ~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~----i~~~~~~w~ 384 (503)
T PF10508_consen 311 FDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDND----ILSITESWY 384 (503)
T ss_pred HHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHH----HHHHHHHHH
Confidence 999999986 55666665 332 245666666677888999999999999997665421100 001111222
Q ss_pred HHhc--cHH-HHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009568 466 EEAE--GLE-KIENLQSHDNNEIYEKAVKILETYWLE 499 (532)
Q Consensus 466 ~~~g--~~~-~l~~L~~~~~~~v~~~a~~il~~~~~~ 499 (532)
+..+ -.. .+..+...+=+|++-.+..++...+..
T Consensus 385 ~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 385 ESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred HHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 2222 222 666777788899999999999887764
No 16
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=5.3e-15 Score=139.01 Aligned_cols=388 Identities=16% Similarity=0.152 Sum_probs=289.5
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 154 (532)
.+..+|++|..++.++.......|.++.-. ...-..+.+.|++..|++++...+ ++++...+..+.|++. +...+.
T Consensus 305 iV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF-D~glr~ 380 (791)
T KOG1222|consen 305 IVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF-DSGLRP 380 (791)
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-cccccH
Confidence 467899999988888888788888877654 455667889999999999999998 9999999999999999 677889
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (532)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~ 234 (532)
.++..|.+|.|..+|.+.. -...|+..+..++.+.. .+.++....+++.+++.+....+.++-...+....|||.+.
T Consensus 381 KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk 457 (791)
T KOG1222|consen 381 KMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK 457 (791)
T ss_pred HHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc
Confidence 9999999999999997643 34557788888876654 67788888899999988767777777777777778999888
Q ss_pred CCCCcccccchHHHHHHh-hcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC-CCccchhhHHHHHHH
Q 009568 235 PQPPFDQVRPALPALAQL-VHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGN 312 (532)
Q Consensus 235 ~~~~~~~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~n 312 (532)
.+.+.......+..|+.. ++..|+-+. ..+.+++.........++ ..+..|...+.. .+......++.+++|
T Consensus 458 RNaQlvceGqgL~~LM~ra~k~~D~lLm----K~vRniSqHeg~tqn~Fi--dyvgdLa~i~~nd~~E~F~~EClGtlan 531 (791)
T KOG1222|consen 458 RNAQLVCEGQGLDLLMERAIKSRDLLLM----KVVRNISQHEGATQNMFI--DYVGDLAGIAKNDNSESFGLECLGTLAN 531 (791)
T ss_pred ccceEEecCcchHHHHHHHhcccchHHH----HHHHHhhhccchHHHHHH--HHHHHHHHHhhcCchHHHHHHHHHHHhh
Confidence 777777667777777654 455555432 345666655443333344 345566666654 456688899999999
Q ss_pred hhcCCcchhHHHhhcCchHHHHHHhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--chhHHH
Q 009568 313 IVTGDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKK 389 (532)
Q Consensus 313 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~ 389 (532)
+.-.+-...+.+-+.+++|.+-..|...- ..++.-.....++.++.. ..+...+..+++++.|+++|+.. +.++..
T Consensus 532 L~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~ 610 (791)
T KOG1222|consen 532 LKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFVV 610 (791)
T ss_pred cccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHHH
Confidence 98866667777778899999999997542 245666777777777764 34444555789999999999875 678888
Q ss_pred HHHHHHHHhhcCCCHHHHHHHH-HcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHh
Q 009568 390 EAAWAISNATSGGTHEQIKYLV-REGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEA 468 (532)
Q Consensus 390 ~a~~aL~nl~~~~~~~~~~~l~-~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (532)
...+++..+..+ ...+..++ +...-..|++++.+.+.+++.+|-.+|.-+....+.+.+.. ..-.......
T Consensus 611 QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAKrI------~~EkFrwHNs 682 (791)
T KOG1222|consen 611 QIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAKRI------AGEKFRWHNS 682 (791)
T ss_pred HHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHHHH------hhhhcccchh
Confidence 899999988875 23445555 44566789999999999999999999998888777664321 1112223456
Q ss_pred ccHHHHHHHhcCCCHH
Q 009568 469 EGLEKIENLQSHDNNE 484 (532)
Q Consensus 469 g~~~~l~~L~~~~~~~ 484 (532)
.+++.++.=|.++++.
T Consensus 683 QWLeMVEs~q~ddsEq 698 (791)
T KOG1222|consen 683 QWLEMVESQQRDDSEQ 698 (791)
T ss_pred HHHHHHHHhhccchhh
Confidence 6777777766666554
No 17
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=1.1e-14 Score=131.10 Aligned_cols=318 Identities=18% Similarity=0.215 Sum_probs=250.4
Q ss_pred hCCcHHHHHHhh---cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhC
Q 009568 115 QSGVVPRFVEFL---MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAG 189 (532)
Q Consensus 115 ~~g~i~~Lv~lL---~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~ 189 (532)
..|..|.++..+ .+++ ..+...++.+|..+..+.|+ +.+..++..++.+|.. ++.++....+.++..-|.
T Consensus 102 ~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~ 176 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI 176 (461)
T ss_pred cCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 445555555443 3444 78888999999998886665 5677788999998865 678888888889999888
Q ss_pred CCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCC-Ccc---------cccchHHHHHHhhcCC-CH
Q 009568 190 DSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP-PFD---------QVRPALPALAQLVHSN-DE 258 (532)
Q Consensus 190 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~---------~~~~~l~~L~~lL~~~-d~ 258 (532)
..+.+|+.+++.++++.+...|.......+.+.++|++..|...+... .+. ...+++..|+..++.. ||
T Consensus 177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp 256 (461)
T KOG4199|consen 177 MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP 256 (461)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence 888899999999999999988866666689999999999998876322 111 1245677788888754 79
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCC-cc---chhhHHHHHHHhhcCCcchhHHHhhcCchHHHH
Q 009568 259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS-PS---VLIPALRTVGNIVTGDDFQTQCIITYGALPYLL 334 (532)
Q Consensus 259 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~---v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~ 334 (532)
.+...++.+|..++.. ++..+.+.+.|.+..++.++.+.+ .. ....++..|..|+- ++.....+++.|+++.++
T Consensus 257 ~~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii 334 (461)
T KOG4199|consen 257 DSLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKII 334 (461)
T ss_pred cHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHH
Confidence 9999999999999865 456688999999999999998843 33 44667888888874 666777899999999999
Q ss_pred HHh-cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--chhHHHHHHHHHHHhhcCCCHHHHHHHH
Q 009568 335 GLL-THSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAWAISNATSGGTHEQIKYLV 411 (532)
Q Consensus 335 ~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~ 411 (532)
.++ .+..+|.|..+++.+++-++-..|++-..+++.|+-...++.|+.. ...++++|||++.|++.. +.+++..++
T Consensus 335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-s~~~~~~~l 413 (461)
T KOG4199|consen 335 TLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-SAENRTILL 413 (461)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-hhhccchHH
Confidence 887 3444899999999999999998899999999999999889988764 467999999999999987 446666666
Q ss_pred HcCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 009568 412 REGCIKPLCDLFVCPDPRIVTVCLEGLENI 441 (532)
Q Consensus 412 ~~~~l~~L~~lL~~~d~~v~~~al~~L~~l 441 (532)
..| ++.|+..-+..++.....+-.+|..+
T Consensus 414 ~~G-iE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 414 ANG-IEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred hcc-HHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 654 77888777777777666666666554
No 18
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.73 E-value=2e-15 Score=157.68 Aligned_cols=366 Identities=20% Similarity=0.215 Sum_probs=278.0
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCC--CHHHHHHHHHHHHHHhcCChh
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED--YPQLQFEAAWALTNIASGTSE 151 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~--~~~~~~~a~~~L~~l~~~~~~ 151 (532)
+....++.++...|.+ .-.+.|..+.+. ......+...|.+|.|+++|.-++ ..+.+..|-.+|.||....++
T Consensus 197 ets~sllsml~t~D~e---e~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD 271 (2195)
T KOG2122|consen 197 ETSNSLLSMLGTDDEE---EMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPD 271 (2195)
T ss_pred hhhhHHhhhcccCCHH---HHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcc
Confidence 3444666666666653 445666666553 455667889999999999998554 267899999999999987776
Q ss_pred hHHHHHhCCChHHHHHh----------hCC-----C---CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh
Q 009568 152 NTKVVIDHGAVPIFVKL----------LAS-----P---SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE 213 (532)
Q Consensus 152 ~~~~i~~~g~i~~L~~l----------L~~-----~---~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~ 213 (532)
....-.+..++..|-++ +.. . +..-...|+.+|..++ .+.++|...-+.|++..+-.++.-
T Consensus 272 ~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~S-FDEEhR~aM~ELG~LqAIaeLl~v 350 (2195)
T KOG2122|consen 272 EKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLS-FDEEHRHAMNELGGLQAIAELLQV 350 (2195)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhh-ccHHHHHHHHHhhhHHHHHHHHHH
Confidence 65544444444433321 111 1 1122235566666664 456689999999999999998731
Q ss_pred -----------hhhhHHHHHHHHHhhhccCCCCC--CCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHH
Q 009568 214 -----------RAKLSMLRNATWTLSNFCRGKPQ--PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQ 280 (532)
Q Consensus 214 -----------~~~~~~~~~a~~~L~~L~~~~~~--~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~ 280 (532)
.....+++++..+|.||..++.. ...--..+++..++..|.+..+++..-....|.||+-..+...+
T Consensus 351 Dh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmK 430 (2195)
T KOG2122|consen 351 DHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMK 430 (2195)
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHH
Confidence 22457999999999999999732 23334589999999999998888988889999999977665555
Q ss_pred HHH-HhCchHHHHHhh-CCCCccchhhHHHHHHHhhcCCcchhHHHh-hcCchHHHHHHhcCCC---chhHHHHHHHHHH
Q 009568 281 AVI-EAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQTQCII-TYGALPYLLGLLTHSH---KKSIKKEACWTIS 354 (532)
Q Consensus 281 ~~~-~~~~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~ 354 (532)
.++ +.|-+-.|+... ..........++.+|+||+.+..+....+- -.|++.+|+.+|.... .-.+...|..+|.
T Consensus 431 kvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILR 510 (2195)
T KOG2122|consen 431 KVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILR 510 (2195)
T ss_pred HHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHH
Confidence 554 557777777664 455667888999999999987765554443 3599999999997541 3467788888888
Q ss_pred HHhc---CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHH
Q 009568 355 NITA---GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIV 431 (532)
Q Consensus 355 nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~ 431 (532)
|+.. .+.++.+.+.+++.+..|++.|++....+..++|.+|+||... +++..++|++.|++..|..++.+++..+.
T Consensus 511 NVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa 589 (2195)
T KOG2122|consen 511 NVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIA 589 (2195)
T ss_pred HHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhh
Confidence 8775 5678888888999999999999999999999999999999987 66778899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 009568 432 TVCLEGLENILKVGE 446 (532)
Q Consensus 432 ~~al~~L~~l~~~~~ 446 (532)
.-...+|.|++..-.
T Consensus 590 ~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 590 MGSAAALRNLLNFRP 604 (2195)
T ss_pred hhHHHHHHHHhcCCc
Confidence 999999999998763
No 19
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.71 E-value=2e-15 Score=139.97 Aligned_cols=355 Identities=15% Similarity=0.119 Sum_probs=259.1
Q ss_pred CCChHHHHHHHHHHHHHhcCCC--CCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009568 85 SDDSSLQLEATTQFRKLLSIER--SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAV 162 (532)
Q Consensus 85 s~~~~~~~~a~~~l~~l~~~~~--~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i 162 (532)
..+..+...+..++.+....+. +.....-+..+++..|.+..++++ .++..++.++|+|+|..+.+.+..+.+.|+-
T Consensus 53 ~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGa 131 (604)
T KOG4500|consen 53 TASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGA 131 (604)
T ss_pred eccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCc
Confidence 3445566667777777764320 111223356788888999888887 8999999999999999999999999999998
Q ss_pred HHHHHhhCC-------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhh-hhhhhHHHHHHHHHhhhccCCC
Q 009568 163 PIFVKLLAS-------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-ERAKLSMLRNATWTLSNFCRGK 234 (532)
Q Consensus 163 ~~L~~lL~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~~a~~~L~~L~~~~ 234 (532)
..++.+|+. .+.+....++..|.|..-++...+..+++.|+++.|...+- ...+....+.+.....||..-.
T Consensus 132 qivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~ 211 (604)
T KOG4500|consen 132 QIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFV 211 (604)
T ss_pred eehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHH
Confidence 888887764 23578888899999999999999999999999999988773 2334444444444333333221
Q ss_pred --CCCCcccccchHHHHHHhhcCC-CHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC-CCc-------cch
Q 009568 235 --PQPPFDQVRPALPALAQLVHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSP-------SVL 303 (532)
Q Consensus 235 --~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~-------~v~ 303 (532)
...++.....+...+++++.+. .+++.+-++..+.+.++++.-. -.+.+.|.+..++.+++. +.. ...
T Consensus 212 ~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~ 290 (604)
T KOG4500|consen 212 CEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLF 290 (604)
T ss_pred HHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHHHH
Confidence 0122222344555666666543 5667777778888888765533 446777999999988865 222 233
Q ss_pred hhHHHHHHHhhcCCcchhHHHhhcC-chHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc
Q 009568 304 IPALRTVGNIVTGDDFQTQCIITYG-ALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN 382 (532)
Q Consensus 304 ~~al~~L~nl~~~~~~~~~~~~~~~-~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~ 382 (532)
..++....-+..|++ ..+.+...+ ++..+...+.+. +......+..+++|+++.+.. .-.+++.+++..|+.++..
T Consensus 291 k~~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~~-ci~~v~~~~~nkL~~~l~~ 367 (604)
T KOG4500|consen 291 KRIAELDVLLLTGDE-SMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDDI-CIQLVQKDFLNKLISCLMQ 367 (604)
T ss_pred HhhhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccchH-HHHHHHHHHHHHHHHHHHH
Confidence 445555555666665 344555555 899999999998 999999999999999987554 4578888999999999865
Q ss_pred -----CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 009568 383 -----AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGE 446 (532)
Q Consensus 383 -----~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 446 (532)
++.+++..++.||.|+.... .....+...|+.+.+...++...|.+....+..+..+....+
T Consensus 368 ~~~vdgnV~~qhA~lsALRnl~IPv--~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe 434 (604)
T KOG4500|consen 368 EKDVDGNVERQHACLSALRNLMIPV--SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQE 434 (604)
T ss_pred hcCCCccchhHHHHHHHHHhccccC--CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence 36678899999999998843 345667888999999999999999999888888887765544
No 20
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=4.3e-14 Score=146.85 Aligned_cols=362 Identities=17% Similarity=0.145 Sum_probs=257.8
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh---
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS--- 150 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~--- 150 (532)
+.++-+.+..+|+++..|..|+..|..+...-.+.....+- .+.+.|.+.+.+++.+ ++..|+++++.++...+
T Consensus 118 ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~ 194 (1075)
T KOG2171|consen 118 ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNK 194 (1075)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccch
Confidence 46788888999999999999999999887642222111111 2677888888888844 99999999999987543
Q ss_pred hhHHHHHhCCChHHHHHhhC----CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhh-hhhhhHHHHHHHH
Q 009568 151 ENTKVVIDHGAVPIFVKLLA----SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-ERAKLSMLRNATW 225 (532)
Q Consensus 151 ~~~~~i~~~g~i~~L~~lL~----~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~~a~~ 225 (532)
.....+. ..+|.++..+. ..+......++.+|..++...+.+-...+. .++...+.+.. +.-+..++..|+.
T Consensus 195 ~~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe 271 (1075)
T KOG2171|consen 195 SEVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALE 271 (1075)
T ss_pred HHHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHH
Confidence 3333333 45677776654 366777788999999998766654332222 13444445443 3347889999999
Q ss_pred HhhhccCCCCC---CCcccccchHHHHHHhhcCC--C--------------HHHHHHHHHHHHHhccCChhHHHHHHHhC
Q 009568 226 TLSNFCRGKPQ---PPFDQVRPALPALAQLVHSN--D--------------EEVLTDACWALSYLSDGTNDKIQAVIEAG 286 (532)
Q Consensus 226 ~L~~L~~~~~~---~~~~~~~~~l~~L~~lL~~~--d--------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 286 (532)
+|..+++..|. ........+++.++.++... | ..--..|..+|-.++..-+.. .+-.-
T Consensus 272 ~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~---~v~p~ 348 (1075)
T KOG2171|consen 272 FLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK---QVLPP 348 (1075)
T ss_pred HHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh---hehHH
Confidence 99999887421 12224566777777776421 1 112334555555555432211 11123
Q ss_pred chHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009568 287 VCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQA 366 (532)
Q Consensus 287 ~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 366 (532)
+++.+-.++.+.+|.-|..++.+|+.++.|..+.....++ .+++.+++.|+++ +|.||..||.+++.++..-...++.
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk 426 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQK 426 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHH
Confidence 5666777789999999999999999999999877666555 7899999999999 9999999999999999876666777
Q ss_pred HHHcCCHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChH-HHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568 367 VIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIK-PLCDLFVCPDPRIVTVCLEGLENILKV 444 (532)
Q Consensus 367 l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~-~L~~lL~~~d~~v~~~al~~L~~l~~~ 444 (532)
-...-++|.|+..+.+. +++|+..|+.++.|++..+....+...+. +++. .|..++.++.+.++..++.+|..+...
T Consensus 427 ~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 427 KHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred HHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 77677888999999886 78999999999999998876655443222 3555 444466678889999999999999887
Q ss_pred hhh
Q 009568 445 GEA 447 (532)
Q Consensus 445 ~~~ 447 (532)
.+.
T Consensus 506 A~~ 508 (1075)
T KOG2171|consen 506 AQE 508 (1075)
T ss_pred Hhh
Confidence 665
No 21
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.69 E-value=2.6e-14 Score=132.69 Aligned_cols=403 Identities=12% Similarity=0.051 Sum_probs=294.4
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCC------CCHHHHHHHHHHHHHHhc
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE------DYPQLQFEAAWALTNIAS 147 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~------~~~~~~~~a~~~L~~l~~ 147 (532)
+.++.+.+...|++.++..+..++|.+++..+ ++.+..+.+.|+-..+++.|+.- .+.+.-..+...|.|..-
T Consensus 87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 45777888888999999999999999999864 77888888999977777777631 124566667788999999
Q ss_pred CChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhhhhhhhHHHHHHH
Q 009568 148 GTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNAT 224 (532)
Q Consensus 148 ~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~ 224 (532)
++.+.+..+.+.|+++.|...+.- ++....+.+.....|+.+-- ....+...+......+++++.....+++...+.
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 999999999999999999987754 67777777777777765422 223455566777888899997777889999999
Q ss_pred HHhhhccCCCCCCCcccccchHHHHHHhhcC-CC-------HHHHHHHHHHHHHhccCChhHHHHHHHhC-chHHHHHhh
Q 009568 225 WTLSNFCRGKPQPPFDQVRPALPALAQLVHS-ND-------EEVLTDACWALSYLSDGTNDKIQAVIEAG-VCPRLVELL 295 (532)
Q Consensus 225 ~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~-~d-------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-~l~~L~~lL 295 (532)
..|...+.++...-.....|.+..++.+++. .+ -.....++....-+..+++. .+.+...+ ++..+..++
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeS-Mq~L~~~p~~l~~~~sw~ 324 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDES-MQKLHADPQFLDFLESWF 324 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchH-HHHHhcCcHHHHHHHHHh
Confidence 9999999887544455557788888888764 22 12233344444444445443 45566555 899999999
Q ss_pred CCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCC----CchhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 009568 296 GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS----HKKSIKKEACWTISNITAGNRDQIQAVIDAG 371 (532)
Q Consensus 296 ~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 371 (532)
.+++......+..+|||++..++ ....+++.+++..|+.+|... .+.+++..++.+|.|++..-+. ...++..|
T Consensus 325 ~S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n-ka~~~~aG 402 (604)
T KOG4500|consen 325 RSDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN-KAHFAPAG 402 (604)
T ss_pred cCCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc-hhhccccc
Confidence 99999999999999999999666 555788889999999999541 1557888999999999874332 45677899
Q ss_pred CHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHH-HHHHHHHHHHHHHHhhhhhhh
Q 009568 372 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR-IVTVCLEGLENILKVGEAEKN 450 (532)
Q Consensus 372 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~-v~~~al~~L~~l~~~~~~~~~ 450 (532)
+.+.++..++...|.+...-...+.-+..+...-..+.......++.|++.-+++|.. +.--....+.-+++...
T Consensus 403 vteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~---- 478 (604)
T KOG4500|consen 403 VTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSK---- 478 (604)
T ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhH----
Confidence 9999999999999999998888887776643222222222335688888888888865 55555555555555431
Q ss_pred ccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHH
Q 009568 451 MGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVK 491 (532)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~ 491 (532)
.....-.+-+.||++....+....+-..++.|.-
T Consensus 479 -------~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalV 512 (604)
T KOG4500|consen 479 -------YKDVILTVPKSGGIKEKVSMFTKNHINMQNEALV 512 (604)
T ss_pred -------hhhhHhhccccccHHHHHHHHHHhhHHHhHHHHH
Confidence 1123344556888888887776666666666543
No 22
>PRK09687 putative lyase; Provisional
Probab=99.68 E-value=6.5e-15 Score=137.53 Aligned_cols=255 Identities=15% Similarity=0.147 Sum_probs=202.2
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009568 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 197 (532)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 197 (532)
-++.|..+|.+.+ ..++..|+++|..+.. ..+++.+..++.++++.+|..++|+|+.+-.... .
T Consensus 24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~--- 87 (280)
T PRK09687 24 NDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C--- 87 (280)
T ss_pred cHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c---
Confidence 5778899999888 8999999999988764 2346778888999999999999999999843221 1
Q ss_pred HHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChh
Q 009568 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND 277 (532)
Q Consensus 198 ~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~ 277 (532)
....++.|..++..++++.++..++.+|++++...... ...+++.+...+.++++.|+..++++|+.+..
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~---- 157 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND---- 157 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC----
Confidence 11246677777557889999999999999997653212 23456677778888899999999999987642
Q ss_pred HHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 009568 278 KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 357 (532)
Q Consensus 278 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 357 (532)
...++.|+.+|.++++.++..|+.+||.+..+++ .+++.|+.+|.+. ++.||..|++.|+.+-
T Consensus 158 -------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 158 -------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALRK 220 (280)
T ss_pred -------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccC
Confidence 1468899999999999999999999999943333 4567899999988 9999999999999963
Q ss_pred cCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHH
Q 009568 358 AGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV-CPDPRIVTVCLE 436 (532)
Q Consensus 358 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~d~~v~~~al~ 436 (532)
++. .+|.|+..+.+++ ++..|+.+|+++-. + ..++.|..+++ .+|+.++..+.+
T Consensus 221 --~~~---------av~~Li~~L~~~~--~~~~a~~ALg~ig~---~---------~a~p~L~~l~~~~~d~~v~~~a~~ 275 (280)
T PRK09687 221 --DKR---------VLSVLIKELKKGT--VGDLIIEAAGELGD---K---------TLLPVLDTLLYKFDDNEIITKAID 275 (280)
T ss_pred --Chh---------HHHHHHHHHcCCc--hHHHHHHHHHhcCC---H---------hHHHHHHHHHhhCCChhHHHHHHH
Confidence 332 6789999998765 77889999998854 2 26888888996 789999999998
Q ss_pred HHHH
Q 009568 437 GLEN 440 (532)
Q Consensus 437 ~L~~ 440 (532)
+|..
T Consensus 276 a~~~ 279 (280)
T PRK09687 276 KLKR 279 (280)
T ss_pred HHhc
Confidence 8764
No 23
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=5.6e-14 Score=132.21 Aligned_cols=379 Identities=19% Similarity=0.135 Sum_probs=273.8
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH
Q 009568 86 DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF 165 (532)
Q Consensus 86 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L 165 (532)
..+.+...|+..|.+++.. -..-..+...+++..||+.|...+ .++.......|..++- -.+++..+.+.|++..|
T Consensus 275 KQeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL 350 (791)
T KOG1222|consen 275 KQEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKL 350 (791)
T ss_pred HHHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHHH
Confidence 3455566677888888753 344455778899999999999888 7888888889999887 56788889999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccch
Q 009568 166 VKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPA 245 (532)
Q Consensus 166 ~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~ 245 (532)
++++...+++++...+..+.|++.++. .|...+..|.+|.+..++..+... ..|+-.+..++.++..........+
T Consensus 351 ~klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~~---~iA~~~lYh~S~dD~~K~MfayTdc 426 (791)
T KOG1222|consen 351 LKLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTKH---GIALNMLYHLSCDDDAKAMFAYTDC 426 (791)
T ss_pred HHhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCcccc---hhhhhhhhhhccCcHHHHHHHHHHH
Confidence 999999999999999999999987664 677888999999999999543332 3355566777776555555556788
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhh-CCCCccchhhHHHHHHHhhcCCcchhHH
Q 009568 246 LPALAQLVHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQTQC 323 (532)
Q Consensus 246 l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~ 323 (532)
++.+.+.+-. .+.+|-...+..-.|++.+.. +.+.+.+...+..|+..- ...++ . -...+.|++.+.......
T Consensus 427 i~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR-NaQlvceGqgL~~LM~ra~k~~D~-l---LmK~vRniSqHeg~tqn~ 501 (791)
T KOG1222|consen 427 IKLLMKDVLSGTGSEVDLALIALCINLCLNKR-NAQLVCEGQGLDLLMERAIKSRDL-L---LMKVVRNISQHEGATQNM 501 (791)
T ss_pred HHHHHHHHHhcCCceecHHHHHHHHHHHhccc-cceEEecCcchHHHHHHHhcccch-H---HHHHHHHhhhccchHHHH
Confidence 8888876644 455665555544556665433 235566656677666653 33332 2 346677888765433333
Q ss_pred HhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--chhHHHHHHHHHHHhhcC
Q 009568 324 IITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAWAISNATSG 401 (532)
Q Consensus 324 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~ 401 (532)
+++ .+.-|..+++...+...-.++..+++|++..+-+-.+.+-+.+++|.+-..|..+ ..+++.....+++.++..
T Consensus 502 Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d 579 (791)
T KOG1222|consen 502 FID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD 579 (791)
T ss_pred HHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh
Confidence 333 3455666666554677888999999999885555445555778999999999875 557788888888888763
Q ss_pred CCHHHHHHHHHcCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhc
Q 009568 402 GTHEQIKYLVREGCIKPLCDLFVC--PDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS 479 (532)
Q Consensus 402 ~~~~~~~~l~~~~~l~~L~~lL~~--~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~ 479 (532)
......+...++++.|+++|+. .|.+++..++-.+..++...-. ..-++.+...-..+..|++
T Consensus 580 --~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t-------------r~~miket~~~AylIDLMH 644 (791)
T KOG1222|consen 580 --LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT-------------RRLMIKETALGAYLIDLMH 644 (791)
T ss_pred --hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH-------------HHHHHhhccchHHHHHHHh
Confidence 3444555678999999999984 6777877788877777765222 2445677777788999999
Q ss_pred CCCHHHHHHHHHHHH
Q 009568 480 HDNNEIYEKAVKILE 494 (532)
Q Consensus 480 ~~~~~v~~~a~~il~ 494 (532)
+.|.+|++-+...++
T Consensus 645 DkN~eiRkVCDn~Ld 659 (791)
T KOG1222|consen 645 DKNAEIRKVCDNALD 659 (791)
T ss_pred cccHHHHHHHHHHHH
Confidence 999998877655444
No 24
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=4.7e-14 Score=127.05 Aligned_cols=309 Identities=12% Similarity=0.136 Sum_probs=246.4
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChH
Q 009568 85 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKVVIDHGAVP 163 (532)
Q Consensus 85 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 163 (532)
+++..+.++++.+|..+..+. | .+.+..++..++.+|.... +.++....+.++..-+.+++.+++.+++.++++
T Consensus 118 ~~~~~~l~ksL~al~~lt~~q--p---dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 118 SPNESVLKKSLEAINSLTHKQ--P---DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred CCchhHHHHHHHHHHHhhcCC--c---chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 566667777777777776542 1 2456678888899887432 368888888999999988999999999999999
Q ss_pred HHHHhhCC-CCHHHHHHHHHHHHHhhCCCc---------hhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568 164 IFVKLLAS-PSDDVREQAVWALGNVAGDSP---------RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (532)
Q Consensus 164 ~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~---------~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~ 233 (532)
.+.+.|.. ....+.+.+.|++.-+..+.. .....+...|++..|+..+.-..++.++..++.+|..|+-.
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 99987765 444577788999998876542 23456778888999999997677899999999999999877
Q ss_pred CCCCCcccccchHHHHHHhhcCC-CHH---HHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC--CCccchhhHH
Q 009568 234 KPQPPFDQVRPALPALAQLVHSN-DEE---VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLIPAL 307 (532)
Q Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~-d~~---v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~al 307 (532)
+.........|++..|++++.+. +.. ....+|..|..++.+ ++....+++.|+.+.++.++.. .+|.+...++
T Consensus 273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~-DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS-DSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM 351 (461)
T ss_pred HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC-CchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence 65556666789999999999874 333 445677777777754 4456889999999999998743 6788999999
Q ss_pred HHHHHhhcCCcchhHHHhhcCchHHHHHHhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchh
Q 009568 308 RTVGNIVTGDDFQTQCIITYGALPYLLGLLTH-SHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFD 386 (532)
Q Consensus 308 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 386 (532)
.+++-|+-..+++...+++.|+-...++.|+. +....+++.|||.+.|++..+.++...++.. .++.|+..-...++.
T Consensus 352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~t 430 (461)
T KOG4199|consen 352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHET 430 (461)
T ss_pred HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999964 3356899999999999999888887777766 568888888888888
Q ss_pred HHHHHHHHHHHhhc
Q 009568 387 IKKEAAWAISNATS 400 (532)
Q Consensus 387 v~~~a~~aL~nl~~ 400 (532)
.+..|-.||..+-.
T Consensus 431 ce~~akaALRDLGc 444 (461)
T KOG4199|consen 431 CEAAAKAALRDLGC 444 (461)
T ss_pred HHHHHHHHHHhcCc
Confidence 88888888887744
No 25
>PRK09687 putative lyase; Provisional
Probab=99.67 E-value=2.3e-14 Score=133.88 Aligned_cols=254 Identities=16% Similarity=0.114 Sum_probs=200.5
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 154 (532)
.++.|+..|.+++..++..|+..|..+-.. .+++.+..++.+++ +.+|..|+++|+.+......
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~------------~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGGQ------------DVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCcc------------hHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc---
Confidence 467899999999999999999999887532 26788899988888 99999999999998752211
Q ss_pred HHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568 155 VVIDHGAVPIFVKL-LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (532)
Q Consensus 155 ~i~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~ 233 (532)
...+++.|..+ +.++++.|+..++.+|++++...... ...++..+...+ .+.+..++..++++|..+..
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~- 157 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND- 157 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence 11346777776 67789999999999999996443211 011344455555 66688999999999976643
Q ss_pred CCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHh
Q 009568 234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313 (532)
Q Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl 313 (532)
...++.|+.++.++++.|+..++.+|+.+....+ .+++.|+..|.+.++.++..|++.|+.+
T Consensus 158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 3588999999999999999999999999843333 4567899999999999999999999985
Q ss_pred hcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh-cCchhHHHHHH
Q 009568 314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ-NAEFDIKKEAA 392 (532)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~ 392 (532)
-. + .++|.|+..|.++ + ++..++.+|+++.. +. .+|.|..++. ..|..++..|.
T Consensus 220 ~~--~---------~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~~---------a~p~L~~l~~~~~d~~v~~~a~ 274 (280)
T PRK09687 220 KD--K---------RVLSVLIKELKKG-T--VGDLIIEAAGELGD--KT---------LLPVLDTLLYKFDDNEIITKAI 274 (280)
T ss_pred CC--h---------hHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--Hh---------HHHHHHHHHhhCCChhHHHHHH
Confidence 42 2 5688999999876 4 78899999999853 33 6788999997 67999999999
Q ss_pred HHHHH
Q 009568 393 WAISN 397 (532)
Q Consensus 393 ~aL~n 397 (532)
++|..
T Consensus 275 ~a~~~ 279 (280)
T PRK09687 275 DKLKR 279 (280)
T ss_pred HHHhc
Confidence 98853
No 26
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.62 E-value=6.7e-14 Score=146.52 Aligned_cols=328 Identities=20% Similarity=0.179 Sum_probs=245.1
Q ss_pred hhhccHHHHHhhhcCCC---hHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHH----------hhcCC------CC
Q 009568 71 TKLESLPAMVAGVWSDD---SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVE----------FLMRE------DY 131 (532)
Q Consensus 71 ~~~~~l~~lv~~L~s~~---~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~----------lL~~~------~~ 131 (532)
...+.|+-+++.|+-++ .+.+..|-.+|.+++.... +....-.+..+++.|-+ ++... ..
T Consensus 232 R~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqP-D~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~ 310 (2195)
T KOG2122|consen 232 RRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQP-DEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPAS 310 (2195)
T ss_pred HhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 34478999999999654 4678889999999987642 22111112223333322 22211 11
Q ss_pred HHHHH-HHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC------------CCHHHHHHHHHHHHHhhCCCchhHH-H
Q 009568 132 PQLQF-EAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS------------PSDDVREQAVWALGNVAGDSPRCRD-L 197 (532)
Q Consensus 132 ~~~~~-~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~------------~~~~v~~~a~~~L~nl~~~~~~~~~-~ 197 (532)
.+-+. .|+..|.+++. +++++..+.+.|++.++-.++.- .+..+|..+..+|.||.......+. .
T Consensus 311 ~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~L 389 (2195)
T KOG2122|consen 311 DEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATL 389 (2195)
T ss_pred cchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhh
Confidence 24455 67778888888 89999999999999999887742 2467999999999999865554444 4
Q ss_pred HHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCccc--ccchHHHHHH-hhcCCCHHHHHHHHHHHHHhccC
Q 009568 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ--VRPALPALAQ-LVHSNDEEVLTDACWALSYLSDG 274 (532)
Q Consensus 198 ~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~--~~~~l~~L~~-lL~~~d~~v~~~a~~~L~~l~~~ 274 (532)
+-..|++..++..| .+...++......+|.||+.......... ..+-+..|+. .++...+..+..++.+|+||+..
T Consensus 390 Cs~rgfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAH 468 (2195)
T KOG2122|consen 390 CSQRGFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAH 468 (2195)
T ss_pred hhhhhHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhc
Confidence 55678999999999 66667888889999999997753222222 2344444443 45566777888999999999977
Q ss_pred ChhHHHHHH-HhCchHHHHHhhCCCC----ccchhhHHHHHHHhh---cCCcchhHHHhhcCchHHHHHHhcCCCchhHH
Q 009568 275 TNDKIQAVI-EAGVCPRLVELLGHPS----PSVLIPALRTVGNIV---TGDDFQTQCIITYGALPYLLGLLTHSHKKSIK 346 (532)
Q Consensus 275 ~~~~~~~~~-~~~~l~~L~~lL~~~~----~~v~~~al~~L~nl~---~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~ 346 (532)
+.++...+. -.|.+..|+.+|.... ..+...+-.+|.|.+ ...+.+++.+.++++|..|+..|++. +-.+.
T Consensus 469 cteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiV 547 (2195)
T KOG2122|consen 469 CTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIV 547 (2195)
T ss_pred ccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEe
Confidence 666555554 3488999999998752 345666666666654 44567888899999999999999998 99999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009568 347 KEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG 402 (532)
Q Consensus 347 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 402 (532)
.++|.+|+||.+.+++..+.+++.|.++.|..++.+++..+..-++.+|.|+...-
T Consensus 548 SNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 548 SNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred ecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 99999999999999998899999999999999999999999999999999998654
No 27
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=6.7e-15 Score=143.32 Aligned_cols=357 Identities=17% Similarity=0.212 Sum_probs=228.5
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCc-hhH-h---hhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPP-IEE-V---IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG 148 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~-~~~-~---i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~ 148 (532)
+.+|.|.++|.+++...+.-|..+|.++.... .. .+. + .-.-.+|.|+++.++++ |.+|..|+.|+..+.-.
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs--a~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDS--AQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIII 204 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhh--HHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeec
Confidence 57899999999999888899999999998642 11 111 0 01236899999999998 99999999999987763
Q ss_pred ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhh
Q 009568 149 TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS 228 (532)
Q Consensus 149 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~ 228 (532)
.+.....-++ .+++.+..+-.+++++||.+.+.++..+....+. +-.-.-.++++.++... ++.|+.+.-.||..+.
T Consensus 205 ~~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d-kl~phl~~IveyML~~t-qd~dE~VALEACEFwl 281 (885)
T KOG2023|consen 205 QTQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPD-KLVPHLDNIVEYMLQRT-QDVDENVALEACEFWL 281 (885)
T ss_pred CcHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH-hcccchHHHHHHHHHHc-cCcchhHHHHHHHHHH
Confidence 3333222222 4566777777779999999999999998754432 11111123455555555 6778889999999999
Q ss_pred hccCCCCCC--CcccccchHHHHHHhhcCCCHHH--HH------------------------------------------
Q 009568 229 NFCRGKPQP--PFDQVRPALPALAQLVHSNDEEV--LT------------------------------------------ 262 (532)
Q Consensus 229 ~L~~~~~~~--~~~~~~~~l~~L~~lL~~~d~~v--~~------------------------------------------ 262 (532)
.++..+-.. -......++|.|+.-+..++.++ ..
T Consensus 282 a~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~D 361 (885)
T KOG2023|consen 282 ALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDD 361 (885)
T ss_pred HHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccc
Confidence 999885111 11233556666654332111000 00
Q ss_pred ----HHHHHHHHhccCChhHHHHHHHhCchH----HHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhc--CchHH
Q 009568 263 ----DACWALSYLSDGTNDKIQAVIEAGVCP----RLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITY--GALPY 332 (532)
Q Consensus 263 ----~a~~~L~~l~~~~~~~~~~~~~~~~l~----~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~--~~l~~ 332 (532)
..-|-|...+...-+....+....+++ .|-..|.++++.+++.++.++|.|+.|.- +.++.+ .++|.
T Consensus 362 DdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM---~g~~p~LpeLip~ 438 (885)
T KOG2023|consen 362 DDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM---QGFVPHLPELIPF 438 (885)
T ss_pred cccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh---hhcccchHHHHHH
Confidence 001223222222222222333344444 45555677899999999999999998753 223332 47899
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHH
Q 009568 333 LLGLLTHSHKKSIKKEACWTISNITAG--NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYL 410 (532)
Q Consensus 333 L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 410 (532)
++.+|.+. .+-||.-.||+|+..+.. ... .+..+.. ++..|++.+-+++.+|++.||.|+..+-.....+.++++
T Consensus 439 l~~~L~DK-kplVRsITCWTLsRys~wv~~~~-~~~~f~p-vL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l 515 (885)
T KOG2023|consen 439 LLSLLDDK-KPLVRSITCWTLSRYSKWVVQDS-RDEYFKP-VLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYL 515 (885)
T ss_pred HHHHhccC-ccceeeeeeeeHhhhhhhHhcCC-hHhhhHH-HHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 99999998 999999999999998751 111 1122221 445566666678899999999999999887776766664
Q ss_pred HHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568 411 VREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 444 (532)
Q Consensus 411 ~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~ 444 (532)
-. ++..|+..+..-..+-.....+++..+...
T Consensus 516 ~~--IL~~l~~af~kYQ~KNLlILYDAIgtlAds 547 (885)
T KOG2023|consen 516 EY--ILDQLVFAFGKYQKKNLLILYDAIGTLADS 547 (885)
T ss_pred HH--HHHHHHHHHHHHhhcceehHHHHHHHHHHH
Confidence 33 556666555532323233344555555443
No 28
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.6e-12 Score=135.45 Aligned_cols=392 Identities=15% Similarity=0.145 Sum_probs=280.3
Q ss_pred HHHHhhhcCC-ChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009568 77 PAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV 155 (532)
Q Consensus 77 ~~lv~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 155 (532)
..++..+.+. .+.++..-+..+..+++.. -+. -..++++.|.+..++++ +..|+.|+.+|+.+...-...-..
T Consensus 82 s~lL~~~~~E~~~~vr~k~~dviAeia~~~-l~e----~WPell~~L~q~~~S~~-~~~rE~al~il~s~~~~~~~~~~~ 155 (1075)
T KOG2171|consen 82 SSLLEIIQSETEPSVRHKLADVIAEIARND-LPE----KWPELLQFLFQSTKSPN-PSLRESALLILSSLPETFGNTLQP 155 (1075)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhc-ccc----chHHHHHHHHHHhcCCC-cchhHHHHHHHHhhhhhhccccch
Confidence 4556666654 4678888888888888764 121 34568889999999998 999999999999998732222111
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc---hhHHHHHhcCChHHHHHHhh---hhhhhHHHHHHHHHhhh
Q 009568 156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP---RCRDLVLSQGALIPLLAQLN---ERAKLSMLRNATWTLSN 229 (532)
Q Consensus 156 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~---~~~~~~~~~~~l~~L~~ll~---~~~~~~~~~~a~~~L~~ 229 (532)
.+ ..+.+.+.+.+.+++..+|..++++++.++...+ ..++.+. ..+|.++..+. +..+......+..+|..
T Consensus 156 ~~-~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~E 232 (1075)
T KOG2171|consen 156 HL-DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIE 232 (1075)
T ss_pred hH-HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHH
Confidence 11 0234555566666666699999999999885442 2223222 24666666663 34466677888888888
Q ss_pred ccCCCCCCCcccccchHHHHHHhhcCC--CHHHHHHHHHHHHHhccCChhHHHHH--HHhCchHHHHHhhCCC--C----
Q 009568 230 FCRGKPQPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTNDKIQAV--IEAGVCPRLVELLGHP--S---- 299 (532)
Q Consensus 230 L~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~l~~~~~~~~~~~--~~~~~l~~L~~lL~~~--~---- 299 (532)
|....|..-......++.....+..+. ++.++..|+..|..++...+...+.. +-..+++.++.++... +
T Consensus 233 l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~ 312 (1075)
T KOG2171|consen 233 LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWS 312 (1075)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhc
Confidence 888765555555566777777777655 78899999999999988755433322 2234566666665431 1
Q ss_pred ----------ccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009568 300 ----------PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369 (532)
Q Consensus 300 ----------~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 369 (532)
......|.++|-.++.+-+.. .+-.-+++.+..++.+. ++.-|+.|..+|+-++.|+++.+...++
T Consensus 313 ~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~---~v~p~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~~l~ 388 (1075)
T KOG2171|consen 313 NEDDLDEDDEETPYRAAEQALDRLALHLGGK---QVLPPLFEALEAMLQST-EWKERHAALLALSVIAEGCSDVMIGNLP 388 (1075)
T ss_pred cccccccccccCcHHHHHHHHHHHHhcCChh---hehHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 124556777787777654421 11224567788888998 9999999999999999999998888765
Q ss_pred cCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhhhh
Q 009568 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP-DPRIVTVCLEGLENILKVGEAE 448 (532)
Q Consensus 370 ~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~-d~~v~~~al~~L~~l~~~~~~~ 448 (532)
. +++.++..+.++++.||..|+.|++.++..-.++..++ ....+++.|+..+++. ++++...+..++-+++....+.
T Consensus 389 ~-Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~ 466 (1075)
T KOG2171|consen 389 K-ILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKS 466 (1075)
T ss_pred H-HHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHH
Confidence 4 89999999999999999999999999998766665444 4556788999988864 5689999999999999877664
Q ss_pred hhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009568 449 KNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILET 495 (532)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~ 495 (532)
...+|...+.+. ++..|..++.+.+++.+...|..
T Consensus 467 --------~l~pYLd~lm~~----~l~~L~~~~~~~v~e~vvtaIas 501 (1075)
T KOG2171|consen 467 --------ILEPYLDGLMEK----KLLLLLQSSKPYVQEQAVTAIAS 501 (1075)
T ss_pred --------HHHHHHHHHHHH----HHHHHhcCCchhHHHHHHHHHHH
Confidence 466777776533 78888899999999888776643
No 29
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.61 E-value=4.8e-13 Score=145.95 Aligned_cols=274 Identities=19% Similarity=0.200 Sum_probs=219.6
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 154 (532)
.++.|+..|.++++.+|..|+..|..+.. .+.++.|+..|.+++ +.++..|+.+|..+....
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~----- 683 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVL----- 683 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcc-----
Confidence 56889999999999999999999988753 237899999998888 999999999998885411
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (532)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~ 234 (532)
...+.|...|.++++.+|..++.+|+.+.... ...++..| .+.++.++..++++|..+-.
T Consensus 684 -----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~~-- 743 (897)
T PRK13800 684 -----PPAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVDD-- 743 (897)
T ss_pred -----CchHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhcccC--
Confidence 12367788888899999999999999874221 23466677 78899999999999987622
Q ss_pred CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhh
Q 009568 235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 314 (532)
Q Consensus 235 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~ 314 (532)
.+.|..++.++++.|+..++.+|+.+..... ..++.|..++.++++.++..|+.+|+.+.
T Consensus 744 -----------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g 803 (897)
T PRK13800 744 -----------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAELG 803 (897)
T ss_pred -----------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 1456788999999999999999998865322 23678889999999999999999999885
Q ss_pred cCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHH
Q 009568 315 TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWA 394 (532)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 394 (532)
... .+.+.+...|.++ ++.||..|+++|+.+.. ++ .++.|+.+|.+++..||..|+++
T Consensus 804 ~~~----------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~--~~---------a~~~L~~~L~D~~~~VR~~A~~a 861 (897)
T PRK13800 804 CPP----------DDVAAATAALRAS-AWQVRQGAARALAGAAA--DV---------AVPALVEALTDPHLDVRKAAVLA 861 (897)
T ss_pred Ccc----------hhHHHHHHHhcCC-ChHHHHHHHHHHHhccc--cc---------hHHHHHHHhcCCCHHHHHHHHHH
Confidence 421 1235688889888 99999999999998742 22 45889999999999999999999
Q ss_pred HHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHH
Q 009568 395 ISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLE 439 (532)
Q Consensus 395 L~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~ 439 (532)
|..+. +++. ..+.|...+++.|+.|+..+..+|.
T Consensus 862 L~~~~--~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 862 LTRWP--GDPA---------ARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HhccC--CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 99972 2332 3667778899999999999999875
No 30
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.59 E-value=3.8e-12 Score=124.84 Aligned_cols=405 Identities=16% Similarity=0.095 Sum_probs=270.9
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHHHHH
Q 009568 79 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKVVI 157 (532)
Q Consensus 79 lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~ 157 (532)
++..+...+++....|..-..+++.+. +++-..+++.|.+|.++.++...+ .++++.+.+.++...+.+.......++
T Consensus 14 ~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL 92 (678)
T KOG1293|consen 14 LLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVL 92 (678)
T ss_pred HHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHH
Confidence 344555677888888999999998874 455556899999999999998654 367777777788888888889999999
Q ss_pred hCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhH--HHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568 158 DHGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSPRCR--DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (532)
Q Consensus 158 ~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~~--~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~ 234 (532)
+.+.++.|+++|.+++ ..+++.++.++.++....+..- .......++..+..++ ..+...+...-+...+++|...
T Consensus 93 ~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~~ 171 (678)
T KOG1293|consen 93 RIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSSTK 171 (678)
T ss_pred HHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccccc
Confidence 9999999999999988 8899999999999987664321 1111222333333333 2244445555566666777665
Q ss_pred CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHH---HhccCChhHHH----HHHHhCchH--HHHHhhCCCCccchhh
Q 009568 235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALS---YLSDGTNDKIQ----AVIEAGVCP--RLVELLGHPSPSVLIP 305 (532)
Q Consensus 235 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~---~l~~~~~~~~~----~~~~~~~l~--~L~~lL~~~~~~v~~~ 305 (532)
.........++...+.-++......++..++.+++ ++..+++.... ...+.|+.+ .+..++.+++...+..
T Consensus 172 ~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~ 251 (678)
T KOG1293|consen 172 DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLR 251 (678)
T ss_pred hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHH
Confidence 44444445666677766666667788999999998 66655543322 233446665 3445556666666666
Q ss_pred HHHHHHHhhcCCc-------------chhHHH--------------------------------------hhcCchHHHH
Q 009568 306 ALRTVGNIVTGDD-------------FQTQCI--------------------------------------ITYGALPYLL 334 (532)
Q Consensus 306 al~~L~nl~~~~~-------------~~~~~~--------------------------------------~~~~~l~~L~ 334 (532)
++.++.++...+. .....+ .+...++...
T Consensus 252 sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ 331 (678)
T KOG1293|consen 252 SLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTT 331 (678)
T ss_pred HHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHH
Confidence 6666666654330 000000 0000111111
Q ss_pred HHhc----------------------------------------------------CCCchhHHHHHHHHHHHHhcCCHH
Q 009568 335 GLLT----------------------------------------------------HSHKKSIKKEACWTISNITAGNRD 362 (532)
Q Consensus 335 ~lL~----------------------------------------------------~~~~~~v~~~a~~~L~nl~~~~~~ 362 (532)
+++. .. +..++..||-++-+++..-..
T Consensus 332 ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV~a 410 (678)
T KOG1293|consen 332 ELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSVSA 410 (678)
T ss_pred HHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHHHH
Confidence 1110 11 334455555555555542111
Q ss_pred HHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 009568 363 QIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL 442 (532)
Q Consensus 363 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~ 442 (532)
....+-...+..+|++++..++..|+..+..+|+|++..-+ .....++..|+++.+..++.++|+.++..++|+|.+++
T Consensus 411 L~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~ 489 (678)
T KOG1293|consen 411 LRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLM 489 (678)
T ss_pred HHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 11122235578899999999999999999999999998544 34567788999999999999999999999999999998
Q ss_pred HhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009568 443 KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLE 499 (532)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 499 (532)
-.++.... ...++. + +-..|..+.++++..|++.|..++.++...
T Consensus 490 f~~de~~k-------~~~~~k-i----~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 490 FNCDEEEK-------FQLLAK-I----PANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred hcchHHHH-------HHHHHH-h----hHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 65544321 111222 2 246678889999999999999999998765
No 31
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=3e-13 Score=132.04 Aligned_cols=318 Identities=14% Similarity=0.173 Sum_probs=223.6
Q ss_pred CCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh----CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009568 116 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID----HGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191 (532)
Q Consensus 116 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~----~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~ 191 (532)
..++|.|+++|.+++ ...+..|..+|.+|+.++++..+.-+. .-.+|.++++.+++++.+|..|+.++..+....
T Consensus 127 pelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 127 PELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred hhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC
Confidence 358999999999998 789999999999999977665544222 135799999999999999999999999887554
Q ss_pred chhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 009568 192 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYL 271 (532)
Q Consensus 192 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l 271 (532)
+..-..-+ ..++..+..+- .+.++++++++|.++..|....+..-.....+++.+++...++.|++|...||.....+
T Consensus 206 ~qal~~~i-D~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 206 TQALYVHI-DKFLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL 283 (885)
T ss_pred cHHHHHHH-HHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence 43211111 12455555555 78899999999999999999887777777889999999999999999999999999988
Q ss_pred ccCCh--hHHHHHHHhCchHHHHHhhCCC---------------------------------------------------
Q 009568 272 SDGTN--DKIQAVIEAGVCPRLVELLGHP--------------------------------------------------- 298 (532)
Q Consensus 272 ~~~~~--~~~~~~~~~~~l~~L~~lL~~~--------------------------------------------------- 298 (532)
+..+. +.....++ .++|.|+.-+...
T Consensus 284 aeqpi~~~~L~p~l~-kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD 362 (885)
T KOG2023|consen 284 AEQPICKEVLQPYLD-KLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD 362 (885)
T ss_pred hcCcCcHHHHHHHHH-HHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence 87652 11111111 4555555433211
Q ss_pred -----CccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCH
Q 009568 299 -----SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 373 (532)
Q Consensus 299 -----~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i 373 (532)
++.+|..+..+|.-++.-.. +.++. .++|.|-..|.+. ...+|+.+..++|.++.|.-...-.-+- .++
T Consensus 363 dD~~~dWNLRkCSAAaLDVLanvf~---~elL~-~l~PlLk~~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~Lp-eLi 436 (885)
T KOG2023|consen 363 DDAFSDWNLRKCSAAALDVLANVFG---DELLP-ILLPLLKEHLSSE-EWKVREAGVLALGAIAEGCMQGFVPHLP-ELI 436 (885)
T ss_pred ccccccccHhhccHHHHHHHHHhhH---HHHHH-HHHHHHHHHcCcc-hhhhhhhhHHHHHHHHHHHhhhcccchH-HHH
Confidence 03344444444444442111 12222 3456666666776 8899999999999999875443322221 378
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHhhcCCCHH-HHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568 374 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHE-QIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG 445 (532)
Q Consensus 374 ~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~-~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (532)
|.|+.+|.++.+-||.-.||+|+..+.....+ .-+++. .++..|...+-+++.+|+++|+.++..+-+.+
T Consensus 437 p~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A 507 (885)
T KOG2023|consen 437 PFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK--PVLEGLLRRLLDSNKKVQEAACSAFATLEEEA 507 (885)
T ss_pred HHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999886533111 112222 24556666666789999999999988876544
No 32
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.56 E-value=7.4e-13 Score=120.76 Aligned_cols=238 Identities=19% Similarity=0.207 Sum_probs=184.4
Q ss_pred cccchHHHHHHhhcC-CCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcc
Q 009568 241 QVRPALPALAQLVHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF 319 (532)
Q Consensus 241 ~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~ 319 (532)
...+-++.|+.+|+. .|+.+++.++.++++.+..+ .....+.+.|+++.+..+|.++++.++..|++++.|++...+.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 345677889999985 58999999999999987654 4457788999999999999999999999999999999986553
Q ss_pred hhHHHhhcCchHHHHHH-hcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009568 320 QTQCIITYGALPYLLGL-LTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA 398 (532)
Q Consensus 320 ~~~~~~~~~~l~~L~~l-L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 398 (532)
.. .++. .++.+... +.++.+..++..+..+|.|++..+.. +.++ .+.++.++.++..++..+|..++++|.|+
T Consensus 88 ~~--~Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 88 QE--QIKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred HH--HHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 32 2332 35555554 44433678999999999999875322 2333 23789999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHcCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhhhhh---hccCCCccchHHHHHHHHhc-cHHH
Q 009568 399 TSGGTHEQIKYLVREGCIKPLCDLFVCP-DPRIVTVCLEGLENILKVGEAEK---NMGTATADVNQYAQLVEEAE-GLEK 473 (532)
Q Consensus 399 ~~~~~~~~~~~l~~~~~l~~L~~lL~~~-d~~v~~~al~~L~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~g-~~~~ 473 (532)
+. ++.....++..+++..|+.+++.. +.++...++..+.||-..-.+.. ....+ ..+.....+.+.+ .-++
T Consensus 162 S~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~--~~~~L~~~~~e~~~~~~~ 237 (254)
T PF04826_consen 162 SE--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDF--SEDSLFSLFGESSQLAKK 237 (254)
T ss_pred cc--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccC--CchhHHHHHccHHHHHHH
Confidence 98 678889999999999999999875 67888889999999865443321 10111 2344446677666 7789
Q ss_pred HHHHhcCCCHHHHHHH
Q 009568 474 IENLQSHDNNEIYEKA 489 (532)
Q Consensus 474 l~~L~~~~~~~v~~~a 489 (532)
|..|..|++++|+.+.
T Consensus 238 l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 238 LQALANHPDPEVKEQV 253 (254)
T ss_pred HHHHHcCCCHHHhhhc
Confidence 9999999999999764
No 33
>PTZ00429 beta-adaptin; Provisional
Probab=99.54 E-value=4.9e-11 Score=124.70 Aligned_cols=338 Identities=14% Similarity=0.119 Sum_probs=233.2
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 154 (532)
.++.+++.+.+++..++......+.+++.. .+.. .+. +++.|.+=+.+++ |.+|..|++.+++|-. ++...
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~--~pel-alL---aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e 139 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARL--QPEK-ALL---AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLE 139 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHccc--ChHH-HHH---HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHH
Confidence 678999999999999999998888888753 2222 122 5788888888888 9999999999999876 44444
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (532)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~ 234 (532)
.+ ++.+.+.+.+.++-||..|+.++.++....+. .+...+.++.|..++ .+.++.+..+|+.+|..++...
T Consensus 140 ~l-----~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 140 YT-----LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred HH-----HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhC
Confidence 33 47788889999999999999999999765553 344567788888888 7889999999999999998765
Q ss_pred CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhh
Q 009568 235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 314 (532)
Q Consensus 235 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~ 314 (532)
+. ........+..++..+..-++..+..++.+|.......+... ..++..+...|.+.++.|...|++++.++.
T Consensus 211 ~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 211 SE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred ch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 42 233445566667777777788888888888866442222211 257788889999999999999999999988
Q ss_pred cCCc-chhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH-------------------------H
Q 009568 315 TGDD-FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAV-------------------------I 368 (532)
Q Consensus 315 ~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-------------------------~ 368 (532)
...+ .....+.. .+-+.++.++ ++ +++++.-++..|.-++...+.....- .
T Consensus 285 ~~~~~~~~~~~~~-rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~La 361 (746)
T PTZ00429 285 SRCSQELIERCTV-RVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLV 361 (746)
T ss_pred CcCCHHHHHHHHH-HHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHc
Confidence 6432 21111111 2224455553 34 56677777666655554333322111 0
Q ss_pred Hc----CCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568 369 DA----GLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 444 (532)
Q Consensus 369 ~~----~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~ 444 (532)
+. .++..|.....+.+.++++.++.+++.++.... .... .++..|+++++.... ++..++.++.+|++.
T Consensus 362 ne~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~-~~a~-----~cV~~Ll~ll~~~~~-~v~e~i~vik~Ilrk 434 (746)
T PTZ00429 362 TPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD-SVAP-----DCANLLLQIVDRRPE-LLPQVVTAAKDIVRK 434 (746)
T ss_pred CcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh-HHHH-----HHHHHHHHHhcCCch-hHHHHHHHHHHHHHH
Confidence 00 133445555556688899999999999987532 2222 367788888876444 344567778888765
Q ss_pred hh
Q 009568 445 GE 446 (532)
Q Consensus 445 ~~ 446 (532)
.+
T Consensus 435 yP 436 (746)
T PTZ00429 435 YP 436 (746)
T ss_pred Cc
Confidence 43
No 34
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.53 E-value=4e-12 Score=138.84 Aligned_cols=278 Identities=17% Similarity=0.202 Sum_probs=220.1
Q ss_pred hCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 009568 115 QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194 (532)
Q Consensus 115 ~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 194 (532)
....++.|+..|.+++ +.+|..|+..|+.+.. .++++.|...|.++++.+|..|+.+|..+....+
T Consensus 619 ~~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-- 684 (897)
T PRK13800 619 DAPSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-- 684 (897)
T ss_pred cchhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC--
Confidence 4457889999999988 9999999999998753 2467899999999999999999999998853222
Q ss_pred HHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 009568 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG 274 (532)
Q Consensus 195 ~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~ 274 (532)
..+.+...| .+.++.++..++.+|..+.... ...++..|.++|+.++..++.+|..+..
T Consensus 685 --------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 685 --------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD- 743 (897)
T ss_pred --------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC-
Confidence 134566777 6688999999999998865321 2457788999999999999999987521
Q ss_pred ChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHH
Q 009568 275 TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS 354 (532)
Q Consensus 275 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 354 (532)
.+.|..++.++++.++..++.+|+.+..... ..++.|..++.++ ++.||..|+.+|+
T Consensus 744 -------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg 800 (897)
T PRK13800 744 -------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALA 800 (897)
T ss_pred -------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 2346678999999999999999998865322 2367888999998 9999999999999
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHH
Q 009568 355 NITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVC 434 (532)
Q Consensus 355 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~a 434 (532)
.+... +. +++.+...+.++++.||..|+++|..+-.. ..++.|..+|+++++.|+..+
T Consensus 801 ~~g~~-~~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~VR~~A 858 (897)
T PRK13800 801 ELGCP-PD---------DVAAATAALRASAWQVRQGAARALAGAAAD------------VAVPALVEALTDPHLDVRKAA 858 (897)
T ss_pred hcCCc-ch---------hHHHHHHHhcCCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHHHHHHH
Confidence 99542 11 235677889989999999999999877431 256899999999999999999
Q ss_pred HHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009568 435 LEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILET 495 (532)
Q Consensus 435 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~ 495 (532)
+.+|..+ .+. ....+.|.....+++++|+..|...|+.
T Consensus 859 ~~aL~~~--~~~---------------------~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 859 VLALTRW--PGD---------------------PAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHhcc--CCC---------------------HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9999886 111 0114567788889999999999988763
No 35
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.51 E-value=1.3e-11 Score=128.90 Aligned_cols=257 Identities=21% Similarity=0.227 Sum_probs=164.6
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 153 (532)
..++.+++.+.+.+...+..+.-.+..+... ++..- +. +++.+.+-|.+++ +.++..|++++++++. ++..
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~~~~-~l---~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~ 112 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHE--DPELL-IL---IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMA 112 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTT--SHHHH-HH---HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc--chhHH-HH---HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchh
Confidence 3678888888888888888888888777654 22211 11 5677777788877 8999999999999884 5555
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (532)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~ 233 (532)
..+ ++.+.+++.++++.+|..|+.++..+....|.. +... .++.+..++ .+.++.++..|+.++..+ +.
T Consensus 113 ~~l-----~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~ 181 (526)
T PF01602_consen 113 EPL-----IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KC 181 (526)
T ss_dssp HHH-----HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HC
T ss_pred hHH-----HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-cc
Confidence 444 488888888889999999999999987655542 2222 477777888 777888898898888888 22
Q ss_pred CCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHh
Q 009568 234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313 (532)
Q Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl 313 (532)
.+..........++.|.+++...++..+..++..+..++...+..... ..+++.+..++.+.++.+...++.++..+
T Consensus 182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l 258 (526)
T PF01602_consen 182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKL 258 (526)
T ss_dssp THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 111111334455556666667778888888888888777655443311 23445555555555555555555555544
Q ss_pred hcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCC
Q 009568 314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360 (532)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 360 (532)
....+ .-..+++.+..++.++ ++.++..++.+|..++...
T Consensus 259 ~~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 259 SPSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp SSSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHC
T ss_pred hcchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhccc
Confidence 43221 1123445555555544 5555555555555555433
No 36
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.50 E-value=1.6e-12 Score=118.53 Aligned_cols=197 Identities=20% Similarity=0.251 Sum_probs=163.3
Q ss_pred hhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc
Q 009568 113 VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP 192 (532)
Q Consensus 113 ~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~ 192 (532)
..+.+-++.|+.+|+...+|.++..|+.++++.+. .+..++.+.+.|+++.+..+|.++++.+++.|+++|.|++...+
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence 35667789999999976559999999999999887 78899999999999999999999999999999999999987654
Q ss_pred hhHHHHHhcCChHHHHHHhhh-hhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 009568 193 RCRDLVLSQGALIPLLAQLNE-RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYL 271 (532)
Q Consensus 193 ~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l 271 (532)
.+..+-. .++.+++.+.. .-+..++..++.+|.+|+..... .......+|.++++|.+++..++..++++|.+|
T Consensus 87 -n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 87 -NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred -hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3444322 46666665533 34778999999999999876432 223466899999999999999999999999999
Q ss_pred ccCChhHHHHHHHhCchHHHHHhhCCC-CccchhhHHHHHHHhhcC
Q 009568 272 SDGTNDKIQAVIEAGVCPRLVELLGHP-SPSVLIPALRTVGNIVTG 316 (532)
Q Consensus 272 ~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~al~~L~nl~~~ 316 (532)
+.++. ....++.++++..++.++... +.++...++..+.||..+
T Consensus 162 S~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 162 SENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred ccCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 97754 557788889999999999875 677899999999999654
No 37
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.49 E-value=6.9e-12 Score=123.06 Aligned_cols=372 Identities=14% Similarity=0.097 Sum_probs=245.0
Q ss_pred hhccHHHHHhhhcCCC--hHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 009568 72 KLESLPAMVAGVWSDD--SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT 149 (532)
Q Consensus 72 ~~~~l~~lv~~L~s~~--~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~ 149 (532)
+.+.++.+...++..+ ++.+.+.+..+.....++ ......+.+.+.++.|.++|...++..+....+.++.++...+
T Consensus 49 k~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~e-qd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~ 127 (678)
T KOG1293|consen 49 KLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGE-QDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETS 127 (678)
T ss_pred hhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhc-cchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcc
Confidence 4578899999888665 455566777777777765 6778889999999999999998875688999999999998754
Q ss_pred hhhH--HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHh
Q 009568 150 SENT--KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTL 227 (532)
Q Consensus 150 ~~~~--~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L 227 (532)
+..- .......+++.+..++..+.......-+....++++. +..+......|+.+.+.-++ ...+..++..+..++
T Consensus 128 ~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~-~~hq~Il~Na~i~ekI~~l~-~~~s~~~RlaaL~~~ 205 (678)
T KOG1293|consen 128 KYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSST-KDHQLILCNAGILEKINILL-MYLSSKLRLAALLCL 205 (678)
T ss_pred cccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccc-chhhheeccccchhhHHHHH-HhhhHHHHHHHHHHh
Confidence 3322 2222334556555555534444444444444555443 34555666777766666555 566778888888888
Q ss_pred h---hccCCCCCCCccc-----ccchHH--HHHHhhcCCCHHHHHHHHHHHHHhccCChh----------------HH--
Q 009568 228 S---NFCRGKPQPPFDQ-----VRPALP--ALAQLVHSNDEEVLTDACWALSYLSDGTND----------------KI-- 279 (532)
Q Consensus 228 ~---~L~~~~~~~~~~~-----~~~~l~--~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~----------------~~-- 279 (532)
+ ++..+++...... ..++.+ .+.+++++++...+..++.++.++...+.+ .+
T Consensus 206 sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q 285 (678)
T KOG1293|consen 206 SRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQ 285 (678)
T ss_pred hccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHH
Confidence 8 6666654332221 234443 344555555555555555555544432200 00
Q ss_pred ---------------------------------HHHHHhCchHHHHHhh-------------------------------
Q 009568 280 ---------------------------------QAVIEAGVCPRLVELL------------------------------- 295 (532)
Q Consensus 280 ---------------------------------~~~~~~~~l~~L~~lL------------------------------- 295 (532)
....+....+.+..++
T Consensus 286 ~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~ 365 (678)
T KOG1293|consen 286 YNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGL 365 (678)
T ss_pred HhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhc
Confidence 0000001111111111
Q ss_pred ---------------------CCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHH
Q 009568 296 ---------------------GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS 354 (532)
Q Consensus 296 ---------------------~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 354 (532)
...+..++.+||.++-+++..-......+-...+...+++++..+ +..|+..+..+|+
T Consensus 366 ~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~ 444 (678)
T KOG1293|consen 366 EISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAIC 444 (678)
T ss_pred chhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHHHHH
Confidence 112334556666666666543332222223456788999999888 8899999999999
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHH
Q 009568 355 NITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVC 434 (532)
Q Consensus 355 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~a 434 (532)
|+..........++..|++..+..++.+.++.+|..+.|+|.++..+.+......+...=.-..+..+.+++|+.|++.+
T Consensus 445 NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~ 524 (678)
T KOG1293|consen 445 NLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQC 524 (678)
T ss_pred HHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHH
Confidence 99986566677899999999999999999999999999999999998766555555554445677778889999999999
Q ss_pred HHHHHHHHHhhhh
Q 009568 435 LEGLENILKVGEA 447 (532)
Q Consensus 435 l~~L~~l~~~~~~ 447 (532)
+..+.|+.....+
T Consensus 525 fqllRNl~c~~~~ 537 (678)
T KOG1293|consen 525 FQLLRNLTCNSRK 537 (678)
T ss_pred HHHHHHhhcCcHH
Confidence 9999999876443
No 38
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.47 E-value=1.1e-12 Score=107.55 Aligned_cols=119 Identities=36% Similarity=0.614 Sum_probs=110.3
Q ss_pred HhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009568 112 EVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191 (532)
Q Consensus 112 ~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~ 191 (532)
.+++.|+++.+++++.+++ +.++..++++|.+++..+++....+++.|+++.++.+|.++++.++..++|+|++++.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 4668899999999999888 899999999999999988999999999999999999999999999999999999999988
Q ss_pred chhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568 192 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (532)
Q Consensus 192 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~ 232 (532)
+..+..+...|+++.++.++ .+.+..+++.++|+|.+|+.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 77788888999999999999 66688999999999999873
No 39
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.45 E-value=1.5e-12 Score=106.70 Aligned_cols=118 Identities=37% Similarity=0.535 Sum_probs=109.7
Q ss_pred HHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH
Q 009568 282 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNR 361 (532)
Q Consensus 282 ~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 361 (532)
+++.|+++.++.+|.++++.++..++++|++++...+.....+++.|+++.+..+|.++ ++.++..++|+|+|++.+.+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence 56779999999999999999999999999999998887888888999999999999998 99999999999999999877
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009568 362 DQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 400 (532)
Q Consensus 362 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 400 (532)
.....+.+.|+++.|+.++...+.+++..++|+|.+++.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 777788899999999999999999999999999999863
No 40
>PTZ00429 beta-adaptin; Provisional
Probab=99.44 E-value=6.5e-10 Score=116.38 Aligned_cols=294 Identities=15% Similarity=0.102 Sum_probs=209.1
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 153 (532)
+.+..+.+.|.+.+...+..|++.+....... .+. ..+.+..++++.+++ .+++....-.+.+++...++..
T Consensus 32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~Dv------S~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pela 103 (746)
T PTZ00429 32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDV------SYLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKA 103 (746)
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCc------hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHH
Confidence 34567788888888888888888777666543 221 126777888888888 8999999999999988666643
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (532)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~ 233 (532)
-. +++.|.+-+.++++.+|..|++++++|-. +..-+. .+.++.+.+ .+.++.+++.|+.++..+.+.
T Consensus 104 lL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 104 LL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred HH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhh
Confidence 22 36888888999999999999999999843 222122 356667777 778999999999999999876
Q ss_pred CCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHh
Q 009568 234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313 (532)
Q Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl 313 (532)
.| ......+.++.|..+|.+.|+.|..+|+.+|..+....+.... ...+.+..++..+..-++-.+...+.+|...
T Consensus 171 ~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y 246 (746)
T PTZ00429 171 DM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQ 246 (746)
T ss_pred Cc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence 44 2333457888999999999999999999999999866544322 3345677788888776666677777777553
Q ss_pred hcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHH
Q 009568 314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAA 392 (532)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 392 (532)
...++... ..++..+...|++. ++.|.-+|+.++.++... +++.+..+... +-+.|+.+ .+++++++--++
T Consensus 247 ~P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~r-l~~pLv~L-~ss~~eiqyvaL 318 (746)
T PTZ00429 247 RPSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTVR-VNTALLTL-SRRDAETQYIVC 318 (746)
T ss_pred CCCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHHH-HHHHHHHh-hCCCccHHHHHH
Confidence 32222111 25677888889998 999999999999998753 23433333321 33455555 345677777777
Q ss_pred HHHHHhhc
Q 009568 393 WAISNATS 400 (532)
Q Consensus 393 ~aL~nl~~ 400 (532)
..|.-++.
T Consensus 319 r~I~~i~~ 326 (746)
T PTZ00429 319 KNIHALLV 326 (746)
T ss_pred HHHHHHHH
Confidence 77655554
No 41
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.43 E-value=1.4e-10 Score=121.11 Aligned_cols=325 Identities=20% Similarity=0.215 Sum_probs=235.7
Q ss_pred HHhhhcCC--ChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009568 79 MVAGVWSD--DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVV 156 (532)
Q Consensus 79 lv~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i 156 (532)
+.+.+.+. +...+..++..+..+...+ . +.. .+.+.+++++.+.+ ...+.-+.-.+..+...+++....
T Consensus 9 l~~~~~~~~~~~~~~~~~l~kli~~~~~G-~-~~~-----~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~~l- 79 (526)
T PF01602_consen 9 LAKILNSFKIDISKKKEALKKLIYLMMLG-Y-DIS-----FLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELLIL- 79 (526)
T ss_dssp HHHHHHCSSTHHHHHHHHHHHHHHHHHTT-----G-----STHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHHHH-
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcC-C-CCc-----hHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHHHH-
Confidence 34444444 6677777777777665543 1 221 47888999999777 899999999999999877773332
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCC
Q 009568 157 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ 236 (532)
Q Consensus 157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~ 236 (532)
++..+.+-|.++++.++..|++++++++ .+...+. .++.+.+++ .++++.+++.|+.++..+.+..|.
T Consensus 80 ----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p~ 147 (526)
T PF01602_consen 80 ----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLL-SDPSPYVRKKAALALLKIYRKDPD 147 (526)
T ss_dssp ----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCHC
T ss_pred ----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHh-cCCchHHHHHHHHHHHHHhccCHH
Confidence 3588888899999999999999999996 3333222 467778888 788889999999999999987432
Q ss_pred CCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcC
Q 009568 237 PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316 (532)
Q Consensus 237 ~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~ 316 (532)
..... .++.+..++.++|+.++..|+.++..+ ...+.... -+-..++..|..++...++-.+..+++++..++..
T Consensus 148 --~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~ 222 (526)
T PF01602_consen 148 --LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPM 222 (526)
T ss_dssp --CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSS
T ss_pred --HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccC
Confidence 21112 789999999999999999999999998 33332211 12224566667777888888999999999998876
Q ss_pred CcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHH
Q 009568 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAIS 396 (532)
Q Consensus 317 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 396 (532)
.+..... ..+++.+..++.+. ++.|..+++.++..+.... ... ..+++.|..++.++++.++..++.+|.
T Consensus 223 ~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~-~~~-----~~~~~~L~~lL~s~~~nvr~~~L~~L~ 292 (526)
T PF01602_consen 223 EPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSP-ELL-----QKAINPLIKLLSSSDPNVRYIALDSLS 292 (526)
T ss_dssp SHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSH-HHH-----HHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred ChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcch-HHH-----HhhHHHHHHHhhcccchhehhHHHHHH
Confidence 6544311 45778899999888 8999999999999887642 212 236788999999889999999999999
Q ss_pred HhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568 397 NATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG 445 (532)
Q Consensus 397 nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (532)
.++... +.. +. ..-..+..+..++|..++..+++.|..+....
T Consensus 293 ~l~~~~-~~~----v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~ 335 (526)
T PF01602_consen 293 QLAQSN-PPA----VF-NQSLILFFLLYDDDPSIRKKALDLLYKLANES 335 (526)
T ss_dssp HHCCHC-HHH----HG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HH
T ss_pred Hhhccc-chh----hh-hhhhhhheecCCCChhHHHHHHHHHhhccccc
Confidence 998863 121 11 11222333344888999999999999988643
No 42
>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....
Probab=99.41 E-value=7.8e-14 Score=106.97 Aligned_cols=90 Identities=48% Similarity=0.622 Sum_probs=60.3
Q ss_pred cchHHHhhhcCC-CCCchHHhhhhhHHHHHHHHHhhHHHHHhhhhhccCCCCCCCCCCCc--cchhhhhhccHHHHHhhh
Q 009568 7 ARAEVRRNRYKV-AVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPAS--NLNLQTKLESLPAMVAGV 83 (532)
Q Consensus 7 ~~~~~~~~~~k~-~~~~~~~~~~r~~~~~~~Rk~~r~~~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~lv~~L 83 (532)
...+.|++.||+ |+|++|+|+||++..++|||+||+|.|.|||+.........+..... ..........++.++..+
T Consensus 4 ~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~v 83 (97)
T PF01749_consen 4 KKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVAGV 83 (97)
T ss_dssp ---GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHHHH
T ss_pred cCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHHhc
Confidence 356789999999 68999999999999999999999999999999865443322111000 000112234678999999
Q ss_pred cCCChHHHHHHHH
Q 009568 84 WSDDSSLQLEATT 96 (532)
Q Consensus 84 ~s~~~~~~~~a~~ 96 (532)
.|+|+..++.|+.
T Consensus 84 ~S~d~~~ql~Atq 96 (97)
T PF01749_consen 84 NSDDPEVQLEATQ 96 (97)
T ss_dssp TSSCHHHHHHHHH
T ss_pred CCCCHHHHHHhhC
Confidence 9999999999875
No 43
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.37 E-value=3.1e-10 Score=110.39 Aligned_cols=322 Identities=13% Similarity=0.080 Sum_probs=223.1
Q ss_pred cHHHHHhhhc-CCChHHHHHHHHHHHHHhcCCCCCchhHhhh-----CCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC
Q 009568 75 SLPAMVAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQ-----SGVVPRFVEFLMREDYPQLQFEAAWALTNIASG 148 (532)
Q Consensus 75 ~l~~lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~-----~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~ 148 (532)
....+++.++ ....++....+..+..++... +.....+.+ ......++.+|..++ .-++..|+.+|+.+.+.
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhc
Confidence 3456666666 345677777888888888752 223344443 356778888998877 78999999999999874
Q ss_pred ChhhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhh-hhHHHHHHHHH
Q 009568 149 TSENTKVVIDHGAVPIFVKLLASP-SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA-KLSMLRNATWT 226 (532)
Q Consensus 149 ~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~~~~~a~~~ 226 (532)
++.........-.++.|...+.++ +...+..|+.+|..+.... .+|..+.+.+++++|+.+|.... +..++..++.+
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~-~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVD-EYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCc-hHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 433211111111334555666553 4777888899999987654 47888888889999999996544 67899999999
Q ss_pred hhhccCCCCCCCcccccchHHHHHHhhcCC-CHHHHHHHHHHHHHhccCC------hhHHHHHHHhCchHHHHHhhCC--
Q 009568 227 LSNFCRGKPQPPFDQVRPALPALAQLVHSN-DEEVLTDACWALSYLSDGT------NDKIQAVIEAGVCPRLVELLGH-- 297 (532)
Q Consensus 227 L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~------~~~~~~~~~~~~l~~L~~lL~~-- 297 (532)
++-|+...+........++++.++.+++.. .+.+..-++.++.|+.... ......+++.|+.+.+-.+...
T Consensus 211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~ 290 (429)
T cd00256 211 IWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY 290 (429)
T ss_pred HHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence 999998865444444578999999999855 6778899999999998643 2233456676766655444433
Q ss_pred CCccchhhHHHHHHH--------hhc--------------CCcch---------hHHHhhc--CchHHHHHHhcCCCchh
Q 009568 298 PSPSVLIPALRTVGN--------IVT--------------GDDFQ---------TQCIITY--GALPYLLGLLTHSHKKS 344 (532)
Q Consensus 298 ~~~~v~~~al~~L~n--------l~~--------------~~~~~---------~~~~~~~--~~l~~L~~lL~~~~~~~ 344 (532)
.|+++... +..|.. +++ -++.+ ...+-+. .++..|+.+|..+.++.
T Consensus 291 ~DedL~ed-l~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~ 369 (429)
T cd00256 291 DDEDLTDD-LKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI 369 (429)
T ss_pred CcHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence 34433221 111111 111 01111 1112222 35788999996554888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009568 345 IKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 400 (532)
Q Consensus 345 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 400 (532)
+..-||.=|+.++...|.....+-+.|+=..++.+|.+++++||.+|+.|+..+..
T Consensus 370 ~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 370 ILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred eeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999878777777788999999999999999999999999987754
No 44
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.35 E-value=4.7e-10 Score=109.10 Aligned_cols=348 Identities=14% Similarity=0.138 Sum_probs=230.4
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhC-----CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009568 117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH-----GAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191 (532)
Q Consensus 117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-----g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~ 191 (532)
..+..++.++.....+++....+..+..+...++.....+.+. ....+++.+|..++.-+...++.+|+.+...+
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 4677788888876667888888888888888777777777764 46678888998889999999999999998654
Q ss_pred chhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCC--CHHHHHHHHHHHH
Q 009568 192 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN--DEEVLTDACWALS 269 (532)
Q Consensus 192 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~ 269 (532)
+.........-.+.-+...+....+...+..++.+|..|.+.++........++++.|+++|... +.+++..++.+++
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW 212 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW 212 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 43211111001223344444333356777888899999998876555444566899999999753 5689999999999
Q ss_pred HhccCChhHHHHHHHhCchHHHHHhhCC-CCccchhhHHHHHHHhhcCCc------chhHHHhhcCchHHHHHHhcCCC-
Q 009568 270 YLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDD------FQTQCIITYGALPYLLGLLTHSH- 341 (532)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~------~~~~~~~~~~~l~~L~~lL~~~~- 341 (532)
-++...+ ........++++.++.++.. ....+..-++.++.|+...+. .....++++|+++.+-.+.....
T Consensus 213 lLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~ 291 (429)
T cd00256 213 LLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYD 291 (429)
T ss_pred HHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCC
Confidence 9987655 34556667999999999976 567788899999999997532 23345667777665555543321
Q ss_pred chhHHHHHHHHHHHHhc------CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc--
Q 009568 342 KKSIKKEACWTISNITA------GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE-- 413 (532)
Q Consensus 342 ~~~v~~~a~~~L~nl~~------~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-- 413 (532)
|+++....- .|..... .+-+....-+..|-+.. .-.+. ++. -| .+....+.+.
T Consensus 292 DedL~edl~-~L~e~L~~~~k~ltsfD~Y~~El~sg~L~W--Sp~H~-se~-----FW----------~EN~~kf~~~~~ 352 (429)
T cd00256 292 DEDLTDDLK-FLTEELKNSVQDLSSFDEYKSELRSGRLHW--SPVHK-SEK-----FW----------RENADRLNEKNY 352 (429)
T ss_pred cHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHhcCCccC--CCCCC-Cch-----HH----------HHHHHHHHhcch
Confidence 444433222 2222111 01111111111222110 00000 001 01 1223333332
Q ss_pred CChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHH
Q 009568 414 GCIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKI 492 (532)
Q Consensus 414 ~~l~~L~~lL~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~i 492 (532)
.++..|+++|+ +.|+.+..+|+.=+..+++..+.. ...+++.|+-+.+..|++|+|++|+..|...
T Consensus 353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~g-------------r~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~a 419 (429)
T cd00256 353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRG-------------KDVVEQLGGKQRVMRLLNHEDPNVRYEALLA 419 (429)
T ss_pred HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccH-------------HHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence 34788999995 678888888998899888875442 5678899999999999999999999999999
Q ss_pred HHHhC
Q 009568 493 LETYW 497 (532)
Q Consensus 493 l~~~~ 497 (532)
+.++.
T Consensus 420 vQklm 424 (429)
T cd00256 420 VQKLM 424 (429)
T ss_pred HHHHH
Confidence 88764
No 45
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=4.6e-10 Score=113.01 Aligned_cols=343 Identities=17% Similarity=0.177 Sum_probs=244.5
Q ss_pred cHHHHHhhhcC-CChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568 75 SLPAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (532)
Q Consensus 75 ~l~~lv~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 153 (532)
.+|.|+.+|+. .+.++...|+++|..++..- ++....+++.++||.|+.-|..-.+-++.++++.+|-.|+.. +-
T Consensus 212 lvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~---H~ 287 (1051)
T KOG0168|consen 212 LVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR---HP 287 (1051)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh---cc
Confidence 56888888885 45889999999999998753 344667789999999998887666689999999999999983 44
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (532)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~ 232 (532)
..++++|++...+.+|.--+..+++.|+.+..|+|..- ++--..+++ .+|.|..+| +..+....+.++-++..++.
T Consensus 288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~d 364 (1051)
T KOG0168|consen 288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIAD 364 (1051)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHHH
Confidence 57899999999999998878899999999999999532 222234444 688899999 77888889999999998887
Q ss_pred CC-CCCCc---ccccchHHHHHHhhcCCC----HHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCc----
Q 009568 233 GK-PQPPF---DQVRPALPALAQLVHSND----EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP---- 300 (532)
Q Consensus 233 ~~-~~~~~---~~~~~~l~~L~~lL~~~d----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~---- 300 (532)
.. +.+.. ....+++.-..+++...+ ..+..-.+..+.-++.+++.....+...++...|..+|.....
T Consensus 365 ~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~na 444 (1051)
T KOG0168|consen 365 GFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANA 444 (1051)
T ss_pred hcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCccc
Confidence 75 22222 223567777777776442 3345566777778887777776777777777777777643110
Q ss_pred c-----ch-----hhH----------------------------------------------------HHHHHHh-----
Q 009568 301 S-----VL-----IPA----------------------------------------------------LRTVGNI----- 313 (532)
Q Consensus 301 ~-----v~-----~~a----------------------------------------------------l~~L~nl----- 313 (532)
. .+ ... .+++..+
T Consensus 445 s~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~ 524 (1051)
T KOG0168|consen 445 SLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTG 524 (1051)
T ss_pred ccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcc
Confidence 0 00 000 0111100
Q ss_pred --------hcCC---------cchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHH-cCCHH
Q 009568 314 --------VTGD---------DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVID-AGLVG 374 (532)
Q Consensus 314 --------~~~~---------~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~-~~~i~ 374 (532)
..++ ++..+.++ ..++|.|+.+..++-++.||..++.+|..+.. .+.+.+..++. .++-.
T Consensus 525 t~~~~~dkl~~~~r~~~l~nqpel~q~F~-~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS 603 (1051)
T KOG0168|consen 525 TSRKQQDKLNGSAREGLLKNQPELLQSFG-KDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSS 603 (1051)
T ss_pred cchhhhhhcCCchhhhhhhcCHHHHHHHH-HHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHH
Confidence 0000 01111111 14688899999887799999999999999886 67888888885 45556
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC
Q 009568 375 PLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC 425 (532)
Q Consensus 375 ~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~ 425 (532)
.+-.+|.+++..+..-|+...--+...-..-+...+..+|++..+-++...
T Consensus 604 ~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~~ 654 (1051)
T KOG0168|consen 604 HLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSVD 654 (1051)
T ss_pred HHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhcc
Confidence 677788888888887777776666665455567778888998888887763
No 46
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=2e-10 Score=114.43 Aligned_cols=364 Identities=17% Similarity=0.207 Sum_probs=233.8
Q ss_pred cHHHHHhhhcCCChH-HHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcC-CCCHHHHHHHHHHHHHHhcCChhh
Q 009568 75 SLPAMVAGVWSDDSS-LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR-EDYPQLQFEAAWALTNIASGTSEN 152 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~-~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~-~~~~~~~~~a~~~L~~l~~~~~~~ 152 (532)
.++.++.....+.+. ++..++.++.-++..- .|..-.--...++..++.-... +.+..+|..|+.+|.|-..-...+
T Consensus 130 li~~lv~nv~~~~~~~~k~~slealGyice~i-~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~n 208 (859)
T KOG1241|consen 130 LIVTLVSNVGEEQASMVKESSLEALGYICEDI-DPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKAN 208 (859)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHccC-CHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555 6777888888887642 2321111134466666665553 334789999999999865422211
Q ss_pred H-HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhcc
Q 009568 153 T-KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC 231 (532)
Q Consensus 153 ~-~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~ 231 (532)
. ...-.+-++...+..-++++.+++..|+.+|..|..-...+-..-+....+..-+.-+ ++.++++.-.++..++++|
T Consensus 209 F~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~am-ks~~deValQaiEFWstic 287 (859)
T KOG1241|consen 209 FNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAM-KSDNDEVALQAIEFWSTIC 287 (859)
T ss_pred hccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHH
Confidence 1 1111223456667777789999999999999999764433333333333344444455 5788999999999999888
Q ss_pred CCCC-------------CCC--cc----cccchHHHHHHhhcCC-------CHHHHHHHHHHHHHhccCChhHHHHHHHh
Q 009568 232 RGKP-------------QPP--FD----QVRPALPALAQLVHSN-------DEEVLTDACWALSYLSDGTNDKIQAVIEA 285 (532)
Q Consensus 232 ~~~~-------------~~~--~~----~~~~~l~~L~~lL~~~-------d~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 285 (532)
.... .++ .. ....++|.|+.+|... ++..-..|-.||.-++....+. ++.
T Consensus 288 eEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~- 363 (859)
T KOG1241|consen 288 EEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP- 363 (859)
T ss_pred HHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc---chh-
Confidence 5431 111 11 1247788888888542 2345555556665554332221 222
Q ss_pred CchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009568 286 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ 365 (532)
Q Consensus 286 ~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 365 (532)
.++|.+-..++++++.-+..|..++|.+..+.+.....-+-.+++|.++.++.++ .-.++..+.|+++.++.+.++.+-
T Consensus 364 ~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~ 442 (859)
T KOG1241|consen 364 HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEAII 442 (859)
T ss_pred hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhhcc
Confidence 4566666677889999999999999999999987766667779999999999987 888999999999999987665432
Q ss_pred HHH-HcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC-----H----HHHHHHHHcCChHHHHhhcCC---CCHHHHH
Q 009568 366 AVI-DAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGT-----H----EQIKYLVREGCIKPLCDLFVC---PDPRIVT 432 (532)
Q Consensus 366 ~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~-----~----~~~~~l~~~~~l~~L~~lL~~---~d~~v~~ 432 (532)
.-. -...++.++.-|. +.|.+..++||++.+++.... . ...++ . ..++..|+..-+. .+..++.
T Consensus 443 n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~-y-~~ii~~Ll~~tdr~dgnqsNLR~ 519 (859)
T KOG1241|consen 443 NQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPF-Y-EAIIGSLLKVTDRADGNQSNLRS 519 (859)
T ss_pred cHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchh-H-HHHHHHHHhhccccccchhhHHH
Confidence 222 2334555555554 368999999999999984220 0 00011 0 0134444444443 3467888
Q ss_pred HHHHHHHHHHHhhhhh
Q 009568 433 VCLEGLENILKVGEAE 448 (532)
Q Consensus 433 ~al~~L~~l~~~~~~~ 448 (532)
.+-++|..+++...+.
T Consensus 520 AAYeALmElIk~st~~ 535 (859)
T KOG1241|consen 520 AAYEALMELIKNSTDD 535 (859)
T ss_pred HHHHHHHHHHHcCcHH
Confidence 8888888888776654
No 47
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=1.4e-09 Score=108.60 Aligned_cols=370 Identities=17% Similarity=0.225 Sum_probs=242.7
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHhcCCC-------------CCc-hhHhh---hCCcHHHHHHhhcCCC------CHH
Q 009568 77 PAMVAGVWSDDSSLQLEATTQFRKLLSIER-------------SPP-IEEVI---QSGVVPRFVEFLMRED------YPQ 133 (532)
Q Consensus 77 ~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~-------------~~~-~~~~i---~~g~i~~Lv~lL~~~~------~~~ 133 (532)
..-+..++|+++++..+|+.....++..+. .+| ...+. -.+++|.|+++|...+ +-.
T Consensus 262 aitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWn 341 (859)
T KOG1241|consen 262 AITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWN 341 (859)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCc
Confidence 344556779999999999999887765321 111 11111 1368899999987522 124
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh
Q 009568 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE 213 (532)
Q Consensus 134 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~ 213 (532)
....|..||.-++.- ..+.++. .++|.+-+-+++++..-++.++.+++.+-......+..-+..++++.++.++ .
T Consensus 342 p~kAAg~CL~l~A~~---~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm-~ 416 (859)
T KOG1241|consen 342 PAKAAGVCLMLFAQC---VGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLM-S 416 (859)
T ss_pred HHHHHHHHHHHHHHH---hcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHh-c
Confidence 556666666666541 1122332 3455555577789999999999999999776666666667778899999999 5
Q ss_pred hhhhHHHHHHHHHhhhccCCCC--CCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHH-----HHHhC
Q 009568 214 RAKLSMLRNATWTLSNFCRGKP--QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQA-----VIEAG 286 (532)
Q Consensus 214 ~~~~~~~~~a~~~L~~L~~~~~--~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~-----~~~~~ 286 (532)
++..-++..+.|++..++...+ ..........++.++.-|. +.|.+..++||++.+|++...+.... ... .
T Consensus 417 D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~ 494 (859)
T KOG1241|consen 417 DPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-P 494 (859)
T ss_pred CchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-h
Confidence 7788889999999999998864 2233344556666666654 57889999999999998542211100 001 2
Q ss_pred chHHHHHhh----CC---CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHH---------HhcCCC---chhHHH
Q 009568 287 VCPRLVELL----GH---PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG---------LLTHSH---KKSIKK 347 (532)
Q Consensus 287 ~l~~L~~lL----~~---~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~---------lL~~~~---~~~v~~ 347 (532)
..+.++.-| .. .+...|..|..+|+.+....+...-.++. ++...++. .+.... -.+++.
T Consensus 495 ~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~-~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs 573 (859)
T KOG1241|consen 495 FYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQ-KLTLVILEKLDQTISSQILSLADRAQLNELQS 573 (859)
T ss_pred hHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHH-HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHH
Confidence 233333322 22 34678999999999999877754433322 33333332 232220 135677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhc-CC
Q 009568 348 EACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLF-VC 425 (532)
Q Consensus 348 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL-~~ 425 (532)
..|.+|..+.+.....+....+. ++..+++++.++ +.-+...|..+++.++..-.+.+.+|+-. ..+.|..-| +.
T Consensus 574 ~Lc~~Lq~i~rk~~~~~~~~~d~-iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~--f~pyL~~gL~n~ 650 (859)
T KOG1241|consen 574 LLCNTLQSIIRKVGSDIREVSDQ-IMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPA--FKPYLLMGLSNF 650 (859)
T ss_pred HHHHHHHHHHHHccccchhHHHH-HHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHH--HHHHHHHHhhcc
Confidence 78888888876333334344433 678889999884 55688889999998888666677777543 677777777 45
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHH
Q 009568 426 PDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVE 466 (532)
Q Consensus 426 ~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (532)
.+..|...++..+..+.+.-+. ...+|+..+.
T Consensus 651 ~e~qVc~~aVglVgdl~raL~~---------~i~py~d~~m 682 (859)
T KOG1241|consen 651 QEYQVCAAAVGLVGDLARALED---------DILPYCDELM 682 (859)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh---------hhhhHHHHHH
Confidence 6778888888888888876554 4667787665
No 48
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=1e-08 Score=103.30 Aligned_cols=342 Identities=17% Similarity=0.190 Sum_probs=239.4
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 153 (532)
..++.++++....|.+.....-..+.+.+... |... .++++.++.=..+++ +.+|..|++.++.+-. +...
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~--P~~a----~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~ 119 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGK--PDLA----ILAVNTFLKDCEDPN-PLIRALALRTMGCLRV--DKIT 119 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccC--chHH----HhhhhhhhccCCCCC-HHHHHHHhhceeeEee--hHHH
Confidence 35799999999999888888888888888753 3221 246788888778888 9999999888877765 2333
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (532)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~ 233 (532)
.. +..+|...+++.++.+|..++.+..++-..++ +.+...|.+..|-.++ .+.++.+..+|+.+|..+...
T Consensus 120 ey-----~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 120 EY-----LCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHES 190 (734)
T ss_pred HH-----HHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHh
Confidence 33 35888999999999999999999999865543 4677889999999999 688999999999999999988
Q ss_pred CCC-CCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHH
Q 009568 234 KPQ-PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN 312 (532)
Q Consensus 234 ~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~n 312 (532)
.+. .........+..++..+..-++.-+...+.++.+-...++.-.. .++..+...|.+.+..+...+...+.+
T Consensus 191 ~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~ 265 (734)
T KOG1061|consen 191 HPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQ 265 (734)
T ss_pred CCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHH
Confidence 753 44444556666677777666677777777777665544332222 467788888999999999889888888
Q ss_pred hhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHH-------------------------HH
Q 009568 313 IVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ-------------------------AV 367 (532)
Q Consensus 313 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~-------------------------~l 367 (532)
+......... .+-..+-+.++.++.+. . .++.-|..-+.-+....++... .+
T Consensus 266 ~~~~~~~~~~-~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~l 342 (734)
T KOG1061|consen 266 LVKYLKQVNE-LLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIEL 342 (734)
T ss_pred HHHHHHHHHH-HHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHH
Confidence 8765543222 22224556666666654 3 5554444444333333332111 01
Q ss_pred HH-cC---CHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 009568 368 ID-AG---LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILK 443 (532)
Q Consensus 368 ~~-~~---~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~ 443 (532)
.. .+ ++..+...-..-|.+..+++.+|+++++..... .+++++.|+++++.....++..+...+..+++
T Consensus 343 a~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~-------~~~cv~~lLell~~~~~yvvqE~~vvi~dilR 415 (734)
T KOG1061|consen 343 ANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ-------SNDCVSILLELLETKVDYVVQEAIVVIRDILR 415 (734)
T ss_pred hhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh-------hhhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence 11 11 233333333445788899999999999885332 15789999999998888888888889999998
Q ss_pred hhhhh
Q 009568 444 VGEAE 448 (532)
Q Consensus 444 ~~~~~ 448 (532)
+.++.
T Consensus 416 kyP~~ 420 (734)
T KOG1061|consen 416 KYPNK 420 (734)
T ss_pred cCCCc
Confidence 76554
No 49
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.13 E-value=1.1e-09 Score=108.81 Aligned_cols=343 Identities=14% Similarity=0.128 Sum_probs=221.7
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCC-HHHHHHHHHHHHHHhcCC-hhh
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDY-PQLQFEAAWALTNIASGT-SEN 152 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~-~~~~~~a~~~L~~l~~~~-~~~ 152 (532)
.+..++..++++.+..+...+....++...-....++.-.+...+..++..++.++. ..+......++.+-..+. ..+
T Consensus 717 ~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpy 796 (1172)
T KOG0213|consen 717 IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPY 796 (1172)
T ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccc
Confidence 466777888888888888888888888765333334444444556666666655442 223333333333322210 111
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH--HHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhc
Q 009568 153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR--DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 230 (532)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~--~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L 230 (532)
.. .++..++..|+++++.+|.+|+..++.++.--..+. ..+...|. .|...| ....++++-.++.++..+
T Consensus 797 lp-----qi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI 868 (1172)
T KOG0213|consen 797 LP-----QICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAI 868 (1172)
T ss_pred hH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHH
Confidence 11 234667778899999999999999999874222221 12222222 244555 566888888888888777
Q ss_pred cCCC-CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHH
Q 009568 231 CRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309 (532)
Q Consensus 231 ~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~ 309 (532)
+... -.....-..+++|.|..+|++....|+++++..++.++...++.+..---..+.--|+.+|...+..++..|..+
T Consensus 869 ~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nT 948 (1172)
T KOG0213|consen 869 VNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNT 948 (1172)
T ss_pred HHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6554 223334457899999999999999999999999999998877665443334566668888888889999999999
Q ss_pred HHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHH
Q 009568 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKK 389 (532)
Q Consensus 310 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 389 (532)
+|.|+.. +-...++..|++-|+.. +...|.-..-+++-++..+.. -.++|.|+.-...++..|+.
T Consensus 949 fG~Iaka-------IGPqdVLatLlnnLkvq-eRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrtPe~nVQn 1013 (1172)
T KOG0213|consen 949 FGYIAKA-------IGPQDVLATLLNNLKVQ-ERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRTPEANVQN 1013 (1172)
T ss_pred hhHHHHh-------cCHHHHHHHHHhcchHH-HHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccCchhHHHH
Confidence 9999853 22234455666666544 333333222333333322111 12678887777777889999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 009568 390 EAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL 442 (532)
Q Consensus 390 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~ 442 (532)
-.+.+++.+..........|+.. +.+.|-+.|.+.|..-+..+..++..+.
T Consensus 1014 GVLkalsf~FeyigemskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 1014 GVLKALSFMFEYIGEMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHh
Confidence 99999999887544444455443 6777778888888877777777776664
No 50
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=1.2e-07 Score=94.42 Aligned_cols=218 Identities=17% Similarity=0.201 Sum_probs=160.4
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009568 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV 155 (532)
Q Consensus 76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 155 (532)
-+.++.+|++.-+-++..|+..+.++... .|.. + ...+|.|++-|.+++ |.++..|+.+++.+|..+|.+.-.
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLk--YPeA--l--r~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL~ 218 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLK--YPEA--L--RPCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYLQ 218 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHh--hhHh--H--hhhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCccccc
Confidence 46778888888888999998888887653 2321 1 126899999999998 999999999999999988776433
Q ss_pred HHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhc--cC
Q 009568 156 VIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF--CR 232 (532)
Q Consensus 156 i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L--~~ 232 (532)
.-|.+.++|.. .+.=+.-..+..+++++--.|..... .+++|..++....-.++...|+.++..- +.
T Consensus 219 -----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 219 -----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred -----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 34888888765 33334455777888887766665444 5889999995555566666666655433 32
Q ss_pred CCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHH
Q 009568 233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN 312 (532)
Q Consensus 233 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~n 312 (532)
+. ........-++..|-.++.++|+.++.-++.+++.+...++..++. .-..++.+|.+.++.++..|+..+.-
T Consensus 289 g~-~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~g 362 (877)
T KOG1059|consen 289 GM-SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLYG 362 (877)
T ss_pred CC-CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHHH
Confidence 21 2333444567777888889999999999999999999887765542 34578899999999999999999988
Q ss_pred hhcC
Q 009568 313 IVTG 316 (532)
Q Consensus 313 l~~~ 316 (532)
++..
T Consensus 363 mVsk 366 (877)
T KOG1059|consen 363 MVSK 366 (877)
T ss_pred Hhhh
Confidence 8853
No 51
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=2.2e-07 Score=93.58 Aligned_cols=324 Identities=17% Similarity=0.210 Sum_probs=238.6
Q ss_pred ccHHHHHhhhcCCC-hHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCCh-
Q 009568 74 ESLPAMVAGVWSDD-SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-DYPQLQFEAAWALTNIASGTS- 150 (532)
Q Consensus 74 ~~l~~lv~~L~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~-~~~~~~~~a~~~L~~l~~~~~- 150 (532)
+.++.|+..+.+.. .+-|..|++.|..+... -+.-+...+++.|++.|+.+ .++++...++..+.++.....
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srk-----YR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK-----YREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHH-----HHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 57889998887654 67788999999888642 23334445788899988753 348999999999999877431
Q ss_pred -----h----------hHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-CCchhHHHHHhc-CChHHHHHHhh
Q 009568 151 -----E----------NTKVVI-DHGAVPIFVKLLASPSDDVREQAVWALGNVAG-DSPRCRDLVLSQ-GALIPLLAQLN 212 (532)
Q Consensus 151 -----~----------~~~~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~-~~l~~L~~ll~ 212 (532)
+ ..+.++ ..+.|..|+..+...+-.||..++..|.++.. .++..++.++.. .++..++.+|
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL- 175 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL- 175 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-
Confidence 1 122233 35789999999999999999999999999875 445677776654 4688999999
Q ss_pred hhhhhHHHHHHHHHhhhccCCCCCCCc-ccccchHHHHHHhhcCC---CH-HHHHHHHHHHHHhccCChhHHHHHHHhCc
Q 009568 213 ERAKLSMLRNATWTLSNFCRGKPQPPF-DQVRPALPALAQLVHSN---DE-EVLTDACWALSYLSDGTNDKIQAVIEAGV 287 (532)
Q Consensus 213 ~~~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~lL~~~---d~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 287 (532)
.+..+.++..++..|..|.++.+..+. ....+++..|..++... |. -|..+++..+.|+..++..+...+.+.+.
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 777788999999999999999855544 34578888899998753 33 58889999999999888888788899999
Q ss_pred hHHHHHhhCC---CC-----cc-----chhhHHHHHHHhhcCCc-----c-hhHHHhhcCchHHHHHHhcCC-CchhHHH
Q 009568 288 CPRLVELLGH---PS-----PS-----VLIPALRTVGNIVTGDD-----F-QTQCIITYGALPYLLGLLTHS-HKKSIKK 347 (532)
Q Consensus 288 l~~L~~lL~~---~~-----~~-----v~~~al~~L~nl~~~~~-----~-~~~~~~~~~~l~~L~~lL~~~-~~~~v~~ 347 (532)
+|.|.++|.. .+ |. -...++.++..++.... . ..+.+..++++..|..++.++ -..+|+.
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence 9999988854 22 21 13446677777665322 1 224566789999999999876 3458999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCC----------HHHHHHHHhcC-chhHHHHHHHHHHHhhcCCC
Q 009568 348 EACWTISNITAGNRDQIQAVIDAGL----------VGPLVNLLQNA-EFDIKKEAAWAISNATSGGT 403 (532)
Q Consensus 348 ~a~~~L~nl~~~~~~~~~~l~~~~~----------i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~ 403 (532)
++..+++++..++......+.+..+ +-.++.+..+. .+..|..+.+++..+.....
T Consensus 336 esiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~ 402 (970)
T KOG0946|consen 336 ESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDND 402 (970)
T ss_pred HHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcch
Confidence 9999999999988776666654211 11223333333 67899999999998887643
No 52
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.08 E-value=9.7e-08 Score=89.81 Aligned_cols=321 Identities=13% Similarity=0.111 Sum_probs=221.5
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh------CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009568 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID------HGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191 (532)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~------~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~ 191 (532)
.+.+++.+++..+.++....++..+..+...+......+.. .-.-+..+.+|...+.-+.+...++++.++..+
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g 145 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFG 145 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhc
Confidence 56667777776554566666666666665544333322221 233677888998899999998999999988554
Q ss_pred chhH---HHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc--CCCHHHHHHHHH
Q 009568 192 PRCR---DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH--SNDEEVLTDACW 266 (532)
Q Consensus 192 ~~~~---~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~--~~d~~v~~~a~~ 266 (532)
+..- +.-. ....|-..+.++.+......++.||..+.+.++.........++..++..+. ..+-.++...+.
T Consensus 146 ~~~~~~~e~~~---~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsif 222 (442)
T KOG2759|consen 146 NCKMELSELDV---YKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIF 222 (442)
T ss_pred cccccchHHHH---HHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHH
Confidence 3211 1111 1233344444456778888899999999998866666666777777777773 337789999999
Q ss_pred HHHHhccCChhHHHHHHHhCchHHHHHhhCC-CCccchhhHHHHHHHhhcCCc------chhHHHhhcCchHHHHHHhcC
Q 009568 267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDD------FQTQCIITYGALPYLLGLLTH 339 (532)
Q Consensus 267 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~------~~~~~~~~~~~l~~L~~lL~~ 339 (532)
|++-|+.++.-. +.+...+.++.|..++++ ....|..-++.++.|++...+ .....++.+++++.+-.+...
T Consensus 223 ciWlLtFn~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~r 301 (442)
T KOG2759|consen 223 CIWLLTFNPHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEER 301 (442)
T ss_pred HHHHhhcCHHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhc
Confidence 999998776543 666777899999999977 467788889999999998774 334456677777766666543
Q ss_pred CC-chhHHHHHHHHHHHH-------hc----------C----CH---------HHHHHHHHc--CCHHHHHHHHhcC-ch
Q 009568 340 SH-KKSIKKEACWTISNI-------TA----------G----NR---------DQIQAVIDA--GLVGPLVNLLQNA-EF 385 (532)
Q Consensus 340 ~~-~~~v~~~a~~~L~nl-------~~----------~----~~---------~~~~~l~~~--~~i~~L~~ll~~~-~~ 385 (532)
.. ++++....-..-..+ +. | +| +....+-+. .++..|+.+|+.. ||
T Consensus 302 kysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp 381 (442)
T KOG2759|consen 302 KYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDP 381 (442)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCC
Confidence 32 333333222221111 11 0 11 223333332 3688899999887 58
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 009568 386 DIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILK 443 (532)
Q Consensus 386 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~ 443 (532)
.+-.-||.=++..+.. .|+....+.+.|+=+.+++++.++|++|+..|+.++..++-
T Consensus 382 ~iL~VAc~DIge~Vr~-yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 382 IILCVACHDIGEYVRH-YPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred ceeehhhhhHHHHHHh-CchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 8888999999999887 56777777788999999999999999999999999998874
No 53
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=4.3e-08 Score=91.03 Aligned_cols=189 Identities=20% Similarity=0.230 Sum_probs=158.7
Q ss_pred CCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHH
Q 009568 256 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG 335 (532)
Q Consensus 256 ~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~ 335 (532)
.+.+-+..++.-|.+++..-+ +...++..|++..++.++.+.+..+|..|+++||.++..++.....+++.|+++.|+.
T Consensus 95 ~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 467778888888888886544 4466888899999999999999999999999999999999988889999999999999
Q ss_pred HhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc--CchhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 009568 336 LLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN--AEFDIKKEAAWAISNATSGGTHEQIKYLVRE 413 (532)
Q Consensus 336 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 413 (532)
+|.++.+..+|..|.++++.+...++.....+...+....|...+++ .+..++..|+..+..++.... .....+...
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~-s~~d~~~~~ 252 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK-SDEDIASSL 252 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh-hhhhHHHHh
Confidence 99987566888999999999999888888899988889999999999 577889999999999987633 333344566
Q ss_pred CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 009568 414 GCIKPLCDLFVCPDPRIVTVCLEGLENILKVGE 446 (532)
Q Consensus 414 ~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 446 (532)
+....+..+....+.++...++.++..++..-.
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 777777788888888888888887777765443
No 54
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=5.9e-07 Score=90.56 Aligned_cols=325 Identities=16% Similarity=0.159 Sum_probs=237.1
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCc---
Q 009568 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSP--- 192 (532)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~--- 192 (532)
-|+.|++-+.+..-.+-|+.|+..|-.++. .++..+... ++++|++.|.. .++++...++.++.++.....
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 688999888776557889999999999987 566666654 58999999876 679999999999999986442
Q ss_pred ---hh----------HH-HHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCc---ccccchHHHHHHhhcC
Q 009568 193 ---RC----------RD-LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF---DQVRPALPALAQLVHS 255 (532)
Q Consensus 193 ---~~----------~~-~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~---~~~~~~l~~L~~lL~~ 255 (532)
.. .+ .+...+.+..++..+ ...|-.++..++..++++....|.... .....++..++.+|.+
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 11 11 233466788888888 777899999999999999887643322 2235688899999999
Q ss_pred CCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCC----CccchhhHHHHHHHhhcCCcchhHHHhhcCchH
Q 009568 256 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP----SPSVLIPALRTVGNIVTGDDFQTQCIITYGALP 331 (532)
Q Consensus 256 ~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~ 331 (532)
..+.++..++..|+.++..++...+.+.=.+++..|+.++... ..-|...|+..|.||...+......+.+.+.+|
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~ 257 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP 257 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence 9999999999999999988776656565568999999999652 235788899999999998888888889999999
Q ss_pred HHHHHhcCCC--c-----hhH-----HHHHHHHHHHHhc-CCH----HHH-HHHHHcCCHHHHHHHHhcC--chhHHHHH
Q 009568 332 YLLGLLTHSH--K-----KSI-----KKEACWTISNITA-GNR----DQI-QAVIDAGLVGPLVNLLQNA--EFDIKKEA 391 (532)
Q Consensus 332 ~L~~lL~~~~--~-----~~v-----~~~a~~~L~nl~~-~~~----~~~-~~l~~~~~i~~L~~ll~~~--~~~v~~~a 391 (532)
.|.++|.... + +.- ...+..++..+.. +++ .+. ..+...+++..|+.++.++ ..+|+..+
T Consensus 258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes 337 (970)
T KOG0946|consen 258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES 337 (970)
T ss_pred HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence 9998885321 2 111 1244555666554 332 223 3455788999999988776 56899999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHcC----------ChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhhhh
Q 009568 392 AWAISNATSGGTHEQIKYLVREG----------CIKPLCDLFVCP-DPRIVTVCLEGLENILKVGEAE 448 (532)
Q Consensus 392 ~~aL~nl~~~~~~~~~~~l~~~~----------~l~~L~~lL~~~-d~~v~~~al~~L~~l~~~~~~~ 448 (532)
..++++.+.+.. ..-..+..-. ++-.++.+..+. ....+..++.++..++-.....
T Consensus 338 iitvAevVRgn~-~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~g 404 (970)
T KOG0946|consen 338 IITVAEVVRGNA-RNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDG 404 (970)
T ss_pred HHHHHHHHHhch-HHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhh
Confidence 999999998753 3333334321 112233333443 4567888888888888766554
No 55
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.06 E-value=3.4e-08 Score=92.83 Aligned_cols=278 Identities=15% Similarity=0.145 Sum_probs=199.6
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCc-h-hHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPP-I-EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (532)
Q Consensus 76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~-~-~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 153 (532)
-+.++..|..++.-+...+.+.+.++++..+... . ..-+ ....|...+++..+++....|++||..+.. -++.+
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~---~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR 191 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDV---YKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYR 191 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHH---HHHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccchh
Confidence 4677888888888888889999998887542111 1 1111 123344555553446788889999999998 78899
Q ss_pred HHHHhCCChHHHHHhhC-C-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhcc
Q 009568 154 KVVIDHGAVPIFVKLLA-S-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC 231 (532)
Q Consensus 154 ~~i~~~g~i~~L~~lL~-~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~ 231 (532)
..++...++..++..+. + .+..++-+.+.+++-++...+ ..+.+...+.++.|..++..+..+.+.+.++.++.|++
T Consensus 192 ~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~-~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll 270 (442)
T KOG2759|consen 192 YAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPH-AAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLL 270 (442)
T ss_pred heeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999883 3 568899999999999966554 44666788899999999988889999999999999999
Q ss_pred CCCCCCCc------ccccchHHHHHHhhc---CCCHHHHHHHHHHHHHhccC------ChhH------------------
Q 009568 232 RGKPQPPF------DQVRPALPALAQLVH---SNDEEVLTDACWALSYLSDG------TNDK------------------ 278 (532)
Q Consensus 232 ~~~~~~~~------~~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~l~~~------~~~~------------------ 278 (532)
...+.... .....-++..++.|. -+|+++..+.-..-..|-.. .+++
T Consensus 271 ~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e 350 (442)
T KOG2759|consen 271 DKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSE 350 (442)
T ss_pred ccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCcccccc
Confidence 87642221 112233334444443 23666554433332222110 0111
Q ss_pred ------HHHHHHh--CchHHHHHhhCCC-CccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHH
Q 009568 279 ------IQAVIEA--GVCPRLVELLGHP-SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA 349 (532)
Q Consensus 279 ------~~~~~~~--~~l~~L~~lL~~~-~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a 349 (532)
...+-+. .++..|+.+|... ++.+...||.=||..+...|.....+.+.|+=+.++++|+++ +++||.+|
T Consensus 351 ~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~A 429 (442)
T KOG2759|consen 351 KFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHA 429 (442)
T ss_pred chHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHH
Confidence 1112211 4788899999765 588899999999999999998888888899999999999999 99999999
Q ss_pred HHHHHHHhcC
Q 009568 350 CWTISNITAG 359 (532)
Q Consensus 350 ~~~L~nl~~~ 359 (532)
..++-.+..+
T Consensus 430 LlavQ~lm~~ 439 (442)
T KOG2759|consen 430 LLAVQKLMVH 439 (442)
T ss_pred HHHHHHHHhh
Confidence 9998777643
No 56
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1e-08 Score=95.12 Aligned_cols=184 Identities=18% Similarity=0.222 Sum_probs=153.6
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHH
Q 009568 131 YPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQ 210 (532)
Q Consensus 131 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~l 210 (532)
+++-+..|+.-|..++. +-++...++..|++..++.++.+.+..+|+.|+|+|+.++..+|..+..+++.|++..|+..
T Consensus 96 ~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 37888888888888888 77888889999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHhhhccCCC-CCCCcccccchHHHHHHhhcC--CCHHHHHHHHHHHHHhccCChhHHHHHHHhCc
Q 009568 211 LNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHS--NDEEVLTDACWALSYLSDGTNDKIQAVIEAGV 287 (532)
Q Consensus 211 l~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~~--~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 287 (532)
+..+.+..++..++.+++.+.++. +........+++..|...+++ .+...+..++..+.++..........+...++
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 987778889999999999999998 444444445668999999998 56778899999999998766555454555566
Q ss_pred hHHHHHhhCCCCccchhhHHHHHHHhhc
Q 009568 288 CPRLVELLGHPSPSVLIPALRTVGNIVT 315 (532)
Q Consensus 288 l~~L~~lL~~~~~~v~~~al~~L~nl~~ 315 (532)
...+..+....+..+...++.++..+..
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 6666677777778888888777766554
No 57
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=8.5e-07 Score=91.78 Aligned_cols=328 Identities=16% Similarity=0.195 Sum_probs=225.4
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHh-----hhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHH
Q 009568 90 LQLEATTQFRKLLSIERSPPIEEV-----IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPI 164 (532)
Q Consensus 90 ~~~~a~~~l~~l~~~~~~~~~~~~-----i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~ 164 (532)
-...++.+|+++++. +|....+ .--|..+.+..+|.....+.++.-|+.++.-+.. +.++...+++.|.+..
T Consensus 1741 ~v~m~LtAL~Nli~~--nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSA--NPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHhh--CcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHH
Confidence 456799999999987 4543333 2347788888888765558999999999887777 8899999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC---CCCCccc
Q 009568 165 FVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK---PQPPFDQ 241 (532)
Q Consensus 165 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~---~~~~~~~ 241 (532)
|+.+|.+ -+..|+.++.+|..+++... .....++.|++..++.++..+..+..+..++..+..|..++ |......
T Consensus 1818 LL~lLHS-~PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL 1895 (2235)
T KOG1789|consen 1818 LLTLLHS-QPSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITL 1895 (2235)
T ss_pred HHHHHhc-ChHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeeh
Confidence 9999976 47789999999999976554 55667789999999999888888999999999999999887 2222222
Q ss_pred ccchHHHHHHhhcC-------------CCHHH------HHHHHHHHHHhccC--------------ChhHH---------
Q 009568 242 VRPALPALAQLVHS-------------NDEEV------LTDACWALSYLSDG--------------TNDKI--------- 279 (532)
Q Consensus 242 ~~~~l~~L~~lL~~-------------~d~~v------~~~a~~~L~~l~~~--------------~~~~~--------- 279 (532)
++.+-..++..+++ .+|++ +...-..+..+... -+++.
T Consensus 1896 ~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E 1975 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKE 1975 (2235)
T ss_pred HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccC
Confidence 22222233333332 12221 22222222222210 00000
Q ss_pred --------H-HHH------------HhCchHHHHHhhCCCCcc--chhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHH
Q 009568 280 --------Q-AVI------------EAGVCPRLVELLGHPSPS--VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL 336 (532)
Q Consensus 280 --------~-~~~------------~~~~l~~L~~lL~~~~~~--v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l 336 (532)
. .+. -.+++..+..++..+++. ....-..++..+....+...+.+-..|.+|.++..
T Consensus 1976 ~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~A 2055 (2235)
T KOG1789|consen 1976 CAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTA 2055 (2235)
T ss_pred cccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHH
Confidence 0 000 114556666666554432 22333344555666666666777778999999999
Q ss_pred hcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCCh
Q 009568 337 LTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCI 416 (532)
Q Consensus 337 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l 416 (532)
+... +..+-+.|..+|..++.. .-+.+.+.....+..++..|... +....-|+.+|..+......+.....+..|++
T Consensus 2056 m~~~-n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLv 2132 (2235)
T KOG1789|consen 2056 MCLQ-NTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLV 2132 (2235)
T ss_pred HHhc-CCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcH
Confidence 9877 667778999999999864 55666666666666777777643 45556889999999887677777778889999
Q ss_pred HHHHhhcCC
Q 009568 417 KPLCDLFVC 425 (532)
Q Consensus 417 ~~L~~lL~~ 425 (532)
+.|+.+|+.
T Consensus 2133 pyLL~LLd~ 2141 (2235)
T KOG1789|consen 2133 PYLLQLLDS 2141 (2235)
T ss_pred HHHHHHhcc
Confidence 999999985
No 58
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.01 E-value=9.6e-09 Score=98.76 Aligned_cols=230 Identities=17% Similarity=0.240 Sum_probs=166.9
Q ss_pred HHHHhhc--CCCHHHHHHHHHHHHHhccCChhHHHHHHH------hCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcc
Q 009568 248 ALAQLVH--SNDEEVLTDACWALSYLSDGTNDKIQAVIE------AGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF 319 (532)
Q Consensus 248 ~L~~lL~--~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~ 319 (532)
.++.+|+ +.+++++.+++..+..+....+...+.+.. ...+..++.++.+++..+...|+++++.++...+.
T Consensus 59 ~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~ 138 (312)
T PF03224_consen 59 LFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPK 138 (312)
T ss_dssp ---HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCc
Confidence 3334443 468899999999999999877766666654 23678888899999999999999999999987765
Q ss_pred hhHHHhhcCchHHHHHHhcC----CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH------hc-CchhHH
Q 009568 320 QTQCIITYGALPYLLGLLTH----SHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLL------QN-AEFDIK 388 (532)
Q Consensus 320 ~~~~~~~~~~l~~L~~lL~~----~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll------~~-~~~~v~ 388 (532)
...... .+.++.++..+.+ + +..++..|+.+|.++.. .+.....+++.++++.+..++ .+ ....++
T Consensus 139 ~~~~~~-~~~l~~ll~~L~~~l~~~-~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~ 215 (312)
T PF03224_consen 139 RSEKLV-KEALPKLLQWLSSQLSSS-DSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ 215 (312)
T ss_dssp --HHHH-HHHHHHHHHHHH-TT-HH-HH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred cccchH-HHHHHHHHHHHHHhhcCC-CcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence 443322 3556677776654 3 55677899999999985 477788888899999999999 22 267888
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHH
Q 009568 389 KEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEE 467 (532)
Q Consensus 389 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (532)
-+++.++.-++. +++....+...++++.|.++++ ...++|++.++.++.|++....+. +...+..
T Consensus 216 Y~~ll~lWlLSF--~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~------------~~~~mv~ 281 (312)
T PF03224_consen 216 YQALLCLWLLSF--EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS------------NIELMVL 281 (312)
T ss_dssp HHHHHHHHHHTT--SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT------------HHHHHHH
T ss_pred HHHHHHHHHHhc--CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH------------HHHHHHH
Confidence 999999999988 6788888888899999999997 467899999999999999765432 5677778
Q ss_pred hccHHHHHHHhc--CCCHHHHHHHHHHHH
Q 009568 468 AEGLEKIENLQS--HDNNEIYEKAVKILE 494 (532)
Q Consensus 468 ~g~~~~l~~L~~--~~~~~v~~~a~~il~ 494 (532)
+|++..++.|+. -.|+|+.+--..+-+
T Consensus 282 ~~~l~~l~~L~~rk~~Dedl~edl~~L~e 310 (312)
T PF03224_consen 282 CGLLKTLQNLSERKWSDEDLTEDLEFLKE 310 (312)
T ss_dssp H-HHHHHHHHHSS--SSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999964 588888876655544
No 59
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.98 E-value=2.7e-07 Score=89.64 Aligned_cols=355 Identities=12% Similarity=0.120 Sum_probs=224.1
Q ss_pred ccHHHHHhhhcC-------CChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 009568 74 ESLPAMVAGVWS-------DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIA 146 (532)
Q Consensus 74 ~~l~~lv~~L~s-------~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~ 146 (532)
+.+|.++++|.. +|+..-..|..+|.-.+... .+.+.+. ++..+-+-+.+++ -.-+..|+.+++.+.
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~----gd~i~~p-Vl~FvEqni~~~~-w~nreaavmAfGSvm 394 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK----GDKIMRP-VLGFVEQNIRSES-WANREAAVMAFGSVM 394 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh----hhHhHHH-HHHHHHHhccCch-hhhHHHHHHHhhhhh
Confidence 357888888875 34566666777776655421 1222222 3333444566777 577888999999998
Q ss_pred cCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh--hhhhHHHHHHH
Q 009568 147 SGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--RAKLSMLRNAT 224 (532)
Q Consensus 147 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~~~~~~a~ 224 (532)
.+..+....-+-..++|.+...+.++..-+++.++|+++.|+.+-+ ..+-..+-++..+..+.. ...+.+..+++
T Consensus 395 ~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va---~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncs 471 (858)
T COG5215 395 HGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA---MIISPCGHLVLEVSASLIGLMDCPFRSINCS 471 (858)
T ss_pred cCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH---HhcCccccccHHHHHHHhhhhccchHHhhhH
Confidence 8655444443445788999998888888899999999999986533 333344555555443322 23567888999
Q ss_pred HHhhhccCCCCCCC---cccccchHHHHHHhh-c-----CCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhh
Q 009568 225 WTLSNFCRGKPQPP---FDQVRPALPALAQLV-H-----SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 295 (532)
Q Consensus 225 ~~L~~L~~~~~~~~---~~~~~~~l~~L~~lL-~-----~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL 295 (532)
|..-||..+-+... ........+.++.-| + .++...+..+..+|+.+...+++....++. |+......-|
T Consensus 472 w~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a-~~~~~~~~kl 550 (858)
T COG5215 472 WRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILA-GFYDYTSKKL 550 (858)
T ss_pred HHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHH-HHHHHHHHHH
Confidence 99999998763322 222333334333322 1 345667888888888887665554443332 3333332222
Q ss_pred C-----------CC----CccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCC
Q 009568 296 G-----------HP----SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360 (532)
Q Consensus 296 ~-----------~~----~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 360 (532)
. .. -.+++..-+..|..+........+. ....++..++++|.+.....+-.....++++++..-
T Consensus 551 ~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~-v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl 629 (858)
T COG5215 551 DECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIED-VEDQLMELFIRILESTKPTTAFGDVYTAISALSTSL 629 (858)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-HHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHH
Confidence 1 11 1345566666676666544433322 223567888999988733455667788899998754
Q ss_pred HHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCC--HHHHHHHHHHH
Q 009568 361 RDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD--PRIVTVCLEGL 438 (532)
Q Consensus 361 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d--~~v~~~al~~L 438 (532)
.+....... .++|.|.+.|...+..+...|...++.++..-..+...+ .......|+++|+++. .++.-.+|.++
T Consensus 630 ~e~Fe~y~~-~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y--~d~~ms~LvQ~lss~~~~R~lKPaiLSvF 706 (858)
T COG5215 630 EERFEQYAS-KFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIY--ADVLMSSLVQCLSSEATHRDLKPAILSVF 706 (858)
T ss_pred HHHHHHHHh-hhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcChhhccccchHHHHHH
Confidence 555544443 489999999988899999999999999987544444443 3346788889998754 45666666666
Q ss_pred HHHH
Q 009568 439 ENIL 442 (532)
Q Consensus 439 ~~l~ 442 (532)
..|.
T Consensus 707 gDIA 710 (858)
T COG5215 707 GDIA 710 (858)
T ss_pred HHHH
Confidence 5554
No 60
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.96 E-value=1.9e-08 Score=96.70 Aligned_cols=228 Identities=14% Similarity=0.171 Sum_probs=161.5
Q ss_pred ChHHHHHHhhhh-hhhHHHHHHHHHhhhccCCCCCCCcccc-------cchHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 009568 203 ALIPLLAQLNER-AKLSMLRNATWTLSNFCRGKPQPPFDQV-------RPALPALAQLVHSNDEEVLTDACWALSYLSDG 274 (532)
Q Consensus 203 ~l~~L~~ll~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~-------~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~ 274 (532)
....++.+|... .+.++.++++..+..++...+....... ...+..+++++.++|..+...++..+..+...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 355666777665 7889999999999999988763332222 12456677788899999999999999999876
Q ss_pred ChhHHHHHHHhCchHHHHHhhCC----CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHh------cCCCchh
Q 009568 275 TNDKIQAVIEAGVCPRLVELLGH----PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLL------THSHKKS 344 (532)
Q Consensus 275 ~~~~~~~~~~~~~l~~L~~lL~~----~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL------~~~~~~~ 344 (532)
.+....... .++++.++.++.+ ++..++..++.+++++.. .+..+..+++.++++.+..++ .+.....
T Consensus 136 ~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 136 GPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp TTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred CCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 654433322 3566777777654 455677899999999996 455788889999999999999 3443678
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhc
Q 009568 345 IKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLF 423 (532)
Q Consensus 345 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL 423 (532)
++.+++.++.-++.. ++.+..+.+.++++.|+++++.. ..+|.+-++.++.|++..........++..|+++.+..+.
T Consensus 214 l~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~ 292 (312)
T PF03224_consen 214 LQYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLS 292 (312)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHh
Confidence 999999999999764 67778888888999999999876 6789999999999999987656788888888888777766
Q ss_pred C--CCCHHHHHH
Q 009568 424 V--CPDPRIVTV 433 (532)
Q Consensus 424 ~--~~d~~v~~~ 433 (532)
. ..|+++..-
T Consensus 293 ~rk~~Dedl~ed 304 (312)
T PF03224_consen 293 ERKWSDEDLTED 304 (312)
T ss_dssp SS--SSHHHHHH
T ss_pred cCCCCCHHHHHH
Confidence 5 478877653
No 61
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.96 E-value=9.8e-08 Score=92.65 Aligned_cols=357 Identities=13% Similarity=0.062 Sum_probs=218.1
Q ss_pred HHHHhhhcCCCh-HHHHHHHHHHHHHhcCCCCCchhHhhhCC-cHHHHH-HhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568 77 PAMVAGVWSDDS-SLQLEATTQFRKLLSIERSPPIEEVIQSG-VVPRFV-EFLMREDYPQLQFEAAWALTNIASGTSENT 153 (532)
Q Consensus 77 ~~lv~~L~s~~~-~~~~~a~~~l~~l~~~~~~~~~~~~i~~g-~i~~Lv-~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 153 (532)
..++.....+.| .....++..+..++... .|-..+...+ ++-.++ .-++.+.+..+|..|+.+|.+-+. ..+
T Consensus 136 ~~mv~nvg~eqp~~~k~~sl~~~gy~ces~--~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~---fv~ 210 (858)
T COG5215 136 EEMVRNVGDEQPVSGKCESLGICGYHCESE--APEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM---FVQ 210 (858)
T ss_pred HHHHHhccccCchHhHHHHHHHHHHHhhcc--CHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH---HHH
Confidence 334444444444 46777888888888653 3322222222 333333 334444447899999999988332 111
Q ss_pred HHHHhC----CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhh
Q 009568 154 KVVIDH----GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN 229 (532)
Q Consensus 154 ~~i~~~----g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~ 229 (532)
..+... -++...+..-+.++.+++..++.||..|..-...+-...++........+.+ ++++.++...++..++.
T Consensus 211 ~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m-ks~nd~va~qavEfWst 289 (858)
T COG5215 211 GNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM-KSQNDEVAIQAVEFWST 289 (858)
T ss_pred HhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchHHHHHHHHHHHH
Confidence 112211 2335555566678999999999999998754433333444433333333334 78889999999999988
Q ss_pred ccCCCCCCCc-----------------ccccchHHHHHHhhcC-------CCHHHHHHHHHHHHHhccCChhHHHHHHHh
Q 009568 230 FCRGKPQPPF-----------------DQVRPALPALAQLVHS-------NDEEVLTDACWALSYLSDGTNDKIQAVIEA 285 (532)
Q Consensus 230 L~~~~~~~~~-----------------~~~~~~l~~L~~lL~~-------~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 285 (532)
+|........ .....++|.|+++|.. +|..+-..|..||.-.+....+ .+++
T Consensus 290 iceEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd---~i~~- 365 (858)
T COG5215 290 ICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD---KIMR- 365 (858)
T ss_pred HHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh---HhHH-
Confidence 8876411100 1135689999999964 2344556666666555433222 2333
Q ss_pred CchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009568 286 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ 365 (532)
Q Consensus 286 ~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 365 (532)
.++..+-.-++++++.-+..+..++|.+..+........+-...+|.+...+.++ .-.++..++|+++.++.+-+..+.
T Consensus 366 pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~va~~i~ 444 (858)
T COG5215 366 PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIADHVAMIIS 444 (858)
T ss_pred HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHHHHHHhcC
Confidence 2555555667889999999999999999999886655556668999999999987 888999999999999865443332
Q ss_pred HHHHcCCHHHHHHHHhc---CchhHHHHHHHHHHHhhcCCCHHHH--HHHHH---cCChHHHHhhcC--CCCHHHHHHHH
Q 009568 366 AVIDAGLVGPLVNLLQN---AEFDIKKEAAWAISNATSGGTHEQI--KYLVR---EGCIKPLCDLFV--CPDPRIVTVCL 435 (532)
Q Consensus 366 ~l~~~~~i~~L~~ll~~---~~~~v~~~a~~aL~nl~~~~~~~~~--~~l~~---~~~l~~L~~lL~--~~d~~v~~~al 435 (532)
+. +-++..+....- +.+.+..+++|...|++.+-.+... ..++. ..++..|+..-+ ..+...+....
T Consensus 445 p~---~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~f 521 (858)
T COG5215 445 PC---GHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLF 521 (858)
T ss_pred cc---ccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 22 222222222211 3678888999999999865322110 11111 012333333222 34556777777
Q ss_pred HHHHHHHHhhhh
Q 009568 436 EGLENILKVGEA 447 (532)
Q Consensus 436 ~~L~~l~~~~~~ 447 (532)
.+|..++.++..
T Consensus 522 saLgtli~~~~d 533 (858)
T COG5215 522 SALGTLILICPD 533 (858)
T ss_pred HHHHHHHhhcch
Confidence 888888776654
No 62
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.95 E-value=4.5e-08 Score=101.09 Aligned_cols=271 Identities=18% Similarity=0.224 Sum_probs=210.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 009568 88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK 167 (532)
Q Consensus 88 ~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ 167 (532)
...|+.|....-...+..+.||-+ +|..++.|-+. --|..|+..|+.+..-.+-.....+.-|+.|..++
T Consensus 450 FteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLSQ---vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLK 519 (1387)
T KOG1517|consen 450 FTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLSQ---VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLK 519 (1387)
T ss_pred HHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHHH---HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 456777888888877776667764 56677766653 35778999999999878888888888999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhh--hhHHHHHHHHHhhhccCCCCCCCcc-cccc
Q 009568 168 LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA--KLSMLRNATWTLSNFCRGKPQPPFD-QVRP 244 (532)
Q Consensus 168 lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~--~~~~~~~a~~~L~~L~~~~~~~~~~-~~~~ 244 (532)
+|+++-.+++-..+.+.+.|..-++.++..+++.++...+++.|..+. +++-+..++.+|+.++++.+..+.. ...+
T Consensus 520 LLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~ 599 (1387)
T KOG1517|consen 520 LLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGN 599 (1387)
T ss_pred HhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcccc
Confidence 999999999999999999988777889888888888888888885422 5577888999999999986444433 3467
Q ss_pred hHHHHHHhhcCC-CHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcC----Ccc
Q 009568 245 ALPALAQLVHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG----DDF 319 (532)
Q Consensus 245 ~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~----~~~ 319 (532)
++..++..+.++ .+-++..+|-||+.|-.+.+...=.-.+.++...|+.+|.++-++||..|+.+||.+... .++
T Consensus 600 li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde 679 (1387)
T KOG1517|consen 600 LIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDE 679 (1387)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccch
Confidence 788888888875 688899999999999877665433445668899999999999999999999999999875 333
Q ss_pred hhHHH------------hhcCch---HHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009568 320 QTQCI------------ITYGAL---PYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369 (532)
Q Consensus 320 ~~~~~------------~~~~~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 369 (532)
.+..+ ++..+. ..++.+++.. .+-++.+..-+|+.+..+...++..+.-
T Consensus 680 ~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~ 743 (1387)
T KOG1517|consen 680 QTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAG 743 (1387)
T ss_pred hhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhh
Confidence 33222 222222 3667777888 9999999999999999887766655443
No 63
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=9.7e-07 Score=89.40 Aligned_cols=362 Identities=15% Similarity=0.138 Sum_probs=182.4
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009568 79 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID 158 (532)
Q Consensus 79 lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~ 158 (532)
+.+.|++.+.-++-.|+.++.++.+.+ ++ ..+.|-+.++|++.+ +-++..|+.|...+....|+..+.+
T Consensus 112 lknDL~s~nq~vVglAL~alg~i~s~E-------ma-rdlapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~f-- 180 (866)
T KOG1062|consen 112 LKNDLNSSNQYVVGLALCALGNICSPE-------MA-RDLAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEHF-- 180 (866)
T ss_pred HHhhccCCCeeehHHHHHHhhccCCHH-------Hh-HHhhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHHh--
Confidence 334445555555555666666665432 11 124556666666655 6666666666666666555544433
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh--------------hhhhHHHHHHH
Q 009568 159 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--------------RAKLSMLRNAT 224 (532)
Q Consensus 159 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~--------------~~~~~~~~~a~ 224 (532)
++...++|.+.+.-|.-.++..+..+|..++..-..+-+ .++.++..|++ -.+|=++..++
T Consensus 181 ---~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iL 255 (866)
T KOG1062|consen 181 ---VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRIL 255 (866)
T ss_pred ---hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHH
Confidence 355555665555555555555555555544332222111 23333333311 01233444444
Q ss_pred HHhhhccCCCCCCCcccccchHHHHHHhhcCC------CHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCC
Q 009568 225 WTLSNFCRGKPQPPFDQVRPALPALAQLVHSN------DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP 298 (532)
Q Consensus 225 ~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~------d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 298 (532)
..|.-|..+++... ..+. ..|.+..... -..+...+..++..+-.++.-+ .-++..|-.+|.+.
T Consensus 256 rlLriLGq~d~daS-d~M~---DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lr------vlainiLgkFL~n~ 325 (866)
T KOG1062|consen 256 RLLRILGQNDADAS-DLMN---DILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLR------VLAINILGKFLLNR 325 (866)
T ss_pred HHHHHhcCCCccHH-HHHH---HHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHH------HHHHHHHHHHhcCC
Confidence 44444444321110 0001 1111111111 1223444444443333222111 01344555556666
Q ss_pred CccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH
Q 009568 299 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 378 (532)
Q Consensus 299 ~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ 378 (532)
+..++..|+..|...+..++...+. -=..++.+|+++ +..+|+.|...+-.+... ..+.. ++..|+.
T Consensus 326 d~NirYvaLn~L~r~V~~d~~avqr-----Hr~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~-----mv~eLl~ 392 (866)
T KOG1062|consen 326 DNNIRYVALNMLLRVVQQDPTAVQR-----HRSTILECLKDP-DVSIKRRALELSYALVNE--SNVRV-----MVKELLE 392 (866)
T ss_pred ccceeeeehhhHHhhhcCCcHHHHH-----HHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHH-----HHHHHHH
Confidence 6666666777766666655533221 124678889999 999999999988888753 33433 4567889
Q ss_pred HHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh-hhhhhccCCCcc
Q 009568 379 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG-EAEKNMGTATAD 457 (532)
Q Consensus 379 ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~-~~~~~~~~~~~~ 457 (532)
+|...+++++...+.-+..++..-.|+..= .++.+...|...-.-|..-+...+..++..+ ...... .
T Consensus 393 fL~~~d~~~k~~~as~I~~laEkfaP~k~W------~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y-----~ 461 (866)
T KOG1062|consen 393 FLESSDEDFKADIASKIAELAEKFAPDKRW------HIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEY-----A 461 (866)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcCCcchh------HHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhH-----H
Confidence 999889999999999988888755443222 2555555665433333333333333333332 111100 1
Q ss_pred chHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009568 458 VNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW 497 (532)
Q Consensus 458 ~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~ 497 (532)
...+...+.+.+ ++.-+.+.+..-|.|+|-+|=
T Consensus 462 ~~rLy~a~~~~~-------~~~is~e~l~qVa~W~IGEYG 494 (866)
T KOG1062|consen 462 VLRLYLALSEDT-------LLDISQEPLLQVASWCIGEYG 494 (866)
T ss_pred HHHHHHHHhhhh-------hhhhhhhhHHHHHHHHhhhhh
Confidence 122222222111 333445566788899998874
No 64
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=3.1e-06 Score=83.99 Aligned_cols=314 Identities=18% Similarity=0.134 Sum_probs=210.3
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009568 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 197 (532)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 197 (532)
++..|.+-+..+. +.+|.....||..+......... ..+.+.+.+++......-+.-+.+.++.+..+... ..
T Consensus 97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~ 169 (569)
T KOG1242|consen 97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ES 169 (569)
T ss_pred HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hh
Confidence 6778888888888 89999999998887652221111 12357777888887788888899999988766543 34
Q ss_pred HHhcCChHHHHHHhhhhhhhHHHH-HHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q 009568 198 VLSQGALIPLLAQLNERAKLSMLR-NATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN 276 (532)
Q Consensus 198 ~~~~~~l~~L~~ll~~~~~~~~~~-~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~ 276 (532)
+.+.+++..+...+ .+......+ .+..+.-..+..-..........++|.++..+.+..+.++..+..+..-+...-+
T Consensus 170 ~~~~~~l~~l~~ai-~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~ 248 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAI-IDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS 248 (569)
T ss_pred hhhhhHHHHHHHHh-cccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence 55667788888877 333333333 2333333333332233333445666777777777788888888777766543322
Q ss_pred hHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHH
Q 009568 277 DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI 356 (532)
Q Consensus 277 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 356 (532)
... ++ .+++.++.-+....|.....++..+|.++...+.+.... -..++|.+...|.++ .+++|+.+..++-++
T Consensus 249 ~~a---VK-~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~-lp~iiP~lsevl~DT-~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 249 AYA---VK-LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLC-LPDLIPVLSEVLWDT-KPEVRKAGIETLLKF 322 (569)
T ss_pred cch---hh-HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHH-HhHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 110 11 345555555555588899999999999998877665443 448999999999999 999999999999988
Q ss_pred hc--CCHHHHHHHHH------------------------------cC----CHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009568 357 TA--GNRDQIQAVID------------------------------AG----LVGPLVNLLQNAEFDIKKEAAWAISNATS 400 (532)
Q Consensus 357 ~~--~~~~~~~~l~~------------------------------~~----~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 400 (532)
+. .+++ ++.++. .- ++|.|.+-+...+..+++.++..+.|++.
T Consensus 323 ~svidN~d-I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~ 401 (569)
T KOG1242|consen 323 GSVIDNPD-IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCK 401 (569)
T ss_pred HHhhccHH-HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence 86 4443 332211 01 23444444445567888999999999987
Q ss_pred CC-CHHH-HHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 009568 401 GG-THEQ-IKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAE 448 (532)
Q Consensus 401 ~~-~~~~-~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~ 448 (532)
-- ++.. .+++-+ +++.|-..+.+.+|+++..+..+|..+++.....
T Consensus 402 LveDp~~lapfl~~--Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 402 LVEDPKDLAPFLPS--LLPGLKENLDDAVPEVRAVAARALGALLERLGEV 449 (569)
T ss_pred hhcCHHHHhhhHHH--HhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh
Confidence 44 3333 333333 6777777788889999999999998888765544
No 65
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=1.1e-06 Score=89.14 Aligned_cols=288 Identities=15% Similarity=0.154 Sum_probs=199.7
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 154 (532)
..|.+.+.|+..++-++..|+.++.++... .|.... .+++...++|.+.+ .-+...++..+..++..+++...
T Consensus 143 lapeVe~Ll~~~~~~irKKA~Lca~r~irK--~P~l~e----~f~~~~~~lL~ek~-hGVL~~~l~l~~e~c~~~~~~l~ 215 (866)
T KOG1062|consen 143 LAPEVERLLQHRDPYIRKKAALCAVRFIRK--VPDLVE----HFVIAFRKLLCEKH-HGVLIAGLHLITELCKISPDALS 215 (866)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHc--CchHHH----HhhHHHHHHHhhcC-CceeeeHHHHHHHHHhcCHHHHH
Confidence 457788889999999999999999999875 344332 26788888998887 78999999999999998887777
Q ss_pred HHHhCCChHHHHHhhCC---------------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhh-----
Q 009568 155 VVIDHGAVPIFVKLLAS---------------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER----- 214 (532)
Q Consensus 155 ~i~~~g~i~~L~~lL~~---------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~----- 214 (532)
.+-+ .++.|+..|+. ++|-++...++.|.-+-.+.+...+.+- ..|-+...+.
T Consensus 216 ~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~-----DiLaqvatntdsskN 288 (866)
T KOG1062|consen 216 YFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMN-----DILAQVATNTDSSKN 288 (866)
T ss_pred HHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHH-----HHHHHHHhccccccc
Confidence 7765 66777766642 4788999999999988766665444431 2233333211
Q ss_pred hhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHh
Q 009568 215 AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 294 (532)
Q Consensus 215 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 294 (532)
....++..++.++..+-... ....-++.+|-++|.+.|..++.-++.+|......++...+. -=..++.+
T Consensus 289 ~GnAILYE~V~TI~~I~~~~-----~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqr-----Hr~tIleC 358 (866)
T KOG1062|consen 289 AGNAILYECVRTIMDIRSNS-----GLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQR-----HRSTILEC 358 (866)
T ss_pred chhHHHHHHHHHHHhccCCc-----hHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHH-----HHHHHHHH
Confidence 12456666666666554332 122345678889999999999999999999998777655442 23568899
Q ss_pred hCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCH
Q 009568 295 LGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLV 373 (532)
Q Consensus 295 L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i 373 (532)
|.+++..++..|+..+-.|+..+ .... ++..|+..|.+. +++++...+.-+..++. ..|+.... +
T Consensus 359 L~DpD~SIkrralELs~~lvn~~--Nv~~-----mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~------i 424 (866)
T KOG1062|consen 359 LKDPDVSIKRRALELSYALVNES--NVRV-----MVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWH------I 424 (866)
T ss_pred hcCCcHHHHHHHHHHHHHHhccc--cHHH-----HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhH------H
Confidence 99999999999999998888544 3333 345788888888 89999999888888886 33433322 3
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009568 374 GPLVNLLQNAEFDIKKEAAWAISNATS 400 (532)
Q Consensus 374 ~~L~~ll~~~~~~v~~~a~~aL~nl~~ 400 (532)
..+...+...-.-|+..+...+..++.
T Consensus 425 dtml~Vl~~aG~~V~~dv~~nll~LIa 451 (866)
T KOG1062|consen 425 DTMLKVLKTAGDFVNDDVVNNLLRLIA 451 (866)
T ss_pred HHHHHHHHhcccccchhhHHHHHHHHh
Confidence 344445544433334344444444433
No 66
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.86 E-value=1e-08 Score=100.04 Aligned_cols=262 Identities=16% Similarity=0.161 Sum_probs=171.7
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh--HHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCC-CC
Q 009568 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC--RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP-QP 237 (532)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~--~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~ 237 (532)
++..++.+|+++.+.+|.+|+...+.++.--..| -..+...|. .|..-| ....++++-..+.++..+..... ..
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhcccc
Confidence 4677788999999999999999888875321111 112222221 233334 45577887777777766654431 11
Q ss_pred CcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCC
Q 009568 238 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD 317 (532)
Q Consensus 238 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~ 317 (532)
...-..+++|.|..+|++....+..+.+..++.++...++.+..---..+.-.|+..|.+.+.+++..|..++|.|+..-
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence 22235789999999999999999999999999999887776543333355666888888889999999999999988632
Q ss_pred cchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHH
Q 009568 318 DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 397 (532)
Q Consensus 318 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~n 397 (532)
. ...++..|++-|+.. +...|.-..-+++-++..+.. -.++|.|+.=...++..|+.-.+.+++.
T Consensus 762 G-------PqdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvLkam~f 826 (975)
T COG5181 762 G-------PQDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVLKAMCF 826 (975)
T ss_pred C-------HHHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHHHHHHH
Confidence 2 224555666666654 433333333333333321111 1267777776677788899999999998
Q ss_pred hhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 009568 398 ATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL 442 (532)
Q Consensus 398 l~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~ 442 (532)
+..........|+.. +.+.|-+.|.+.|+.-+..+...+..+.
T Consensus 827 mFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~ 869 (975)
T COG5181 827 MFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLV 869 (975)
T ss_pred HHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence 877554444555443 5667777787888766666655555443
No 67
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.82 E-value=6.5e-07 Score=89.57 Aligned_cols=334 Identities=12% Similarity=0.111 Sum_probs=210.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh--HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009568 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN--TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD 196 (532)
Q Consensus 119 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~--~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 196 (532)
+...+..|++.+ +.++..|+..++.++.--..+ -+.+...| -.|...|....+++.-..+.++..|+..-.-.+.
T Consensus 801 ~stiL~rLnnks-a~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 801 CSTILWRLNNKS-AKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence 344556677777 899999999998887521111 11222233 4466778778888887777776666532100000
Q ss_pred HHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCC-CCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 009568 197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ-PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT 275 (532)
Q Consensus 197 ~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~ 275 (532)
.---.++++.|..+| ++....++.+++..+..+|...+. ......-.+.--|+.+|...+.+++..+..++++++..-
T Consensus 878 ~pPi~dllPrltPIL-knrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaI 956 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPIL-KNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAI 956 (1172)
T ss_pred CCChhhhcccchHhh-hhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc
Confidence 111245788999999 888899999999999999987643 222222333445677788888999999999999998432
Q ss_pred hhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 009568 276 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN 355 (532)
Q Consensus 276 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 355 (532)
. -.+++..|++-|...+-..+....-+|+-.+..+. -..++|.|+.=...+ +..|+...+.+++.
T Consensus 957 G-------PqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~-------pFtVLPalmneYrtP-e~nVQnGVLkalsf 1021 (1172)
T KOG0213|consen 957 G-------PQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCG-------PFTVLPALMNEYRTP-EANVQNGVLKALSF 1021 (1172)
T ss_pred C-------HHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcC-------chhhhHHHHhhccCc-hhHHHHhHHHHHHH
Confidence 2 12456666666655544434333333333332221 124567777777777 78899999999988
Q ss_pred HhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcC-------CCCH
Q 009568 356 ITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV-------CPDP 428 (532)
Q Consensus 356 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-------~~d~ 428 (532)
+.....+.-...+. -+.|.|-+.|.+.|.--|..|+.++.+++.+.. ..|..+.++.+|+ ...|
T Consensus 1022 ~FeyigemskdYiy-av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpNIle~sP 1092 (1172)
T KOG0213|consen 1022 MFEYIGEMSKDYIY-AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPNILETSP 1092 (1172)
T ss_pred HHHHHHHHhhhHHH-HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhhhcCCCh
Confidence 87632222222222 267888899998899999999999999988642 2255556666554 3557
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCC
Q 009568 429 RIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEE 500 (532)
Q Consensus 429 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~ 500 (532)
.++....+++..+-..-. ...+ +..+.+=.-|+...|++..-.+++.++-.+
T Consensus 1093 hviqa~~e~~eg~r~~Lg-----------~~~~---------~~Y~~QGLFHParkVR~~yw~vyn~my~~~ 1144 (1172)
T KOG0213|consen 1093 HVIQAFDEAMEGLRVALG-----------PQAM---------LKYCLQGLFHPARKVRKRYWTVYNSMYHGS 1144 (1172)
T ss_pred HHHHHHHHHHHHHHHHhc-----------hHHH---------HHHHHHhccCcHHHHHHHHHHHHHhHhhcc
Confidence 777777776665533211 1111 122233346888888888777777765543
No 68
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=6.5e-06 Score=82.51 Aligned_cols=307 Identities=16% Similarity=0.171 Sum_probs=206.1
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCch-------hHhhh----CCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568 86 DDSSLQLEATTQFRKLLSIERSPPI-------EEVIQ----SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (532)
Q Consensus 86 ~~~~~~~~a~~~l~~l~~~~~~~~~-------~~~i~----~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 154 (532)
++.++.......+++.+...+.... ..++. .++-+-++.+|++.. |-+|..|+.++..+...-|+...
T Consensus 102 ~~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr 180 (877)
T KOG1059|consen 102 DDTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR 180 (877)
T ss_pred CCccHHHHHHHHHHHHhccCccchhhheecccccccCchhhHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh
Confidence 3455666677777777663211111 11111 134566778888888 89999999999999875555433
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (532)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~ 234 (532)
.++|.|..-|.++++.|+..|+.++|.++..+|..-- ..-|.+..++..+.+.=+.-..+..+.+|+--.
T Consensus 181 -----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL-----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplE 250 (877)
T KOG1059|consen 181 -----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL-----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLE 250 (877)
T ss_pred -----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc-----cccHHHHHHHhccCCCeehHHHHHHHhhccccC
Confidence 4579999999999999999999999999988886421 245667777766667666667777777777543
Q ss_pred CCCCcccccchHHHHHHhhcCCC-HHHHHHHHHHHH--HhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHH
Q 009568 235 PQPPFDQVRPALPALAQLVHSND-EEVLTDACWALS--YLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 311 (532)
Q Consensus 235 ~~~~~~~~~~~l~~L~~lL~~~d-~~v~~~a~~~L~--~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~ 311 (532)
| ...+.+++.|..+++++. ..+...++.++. +++.+.++....+ . -.++.|-.++.+.++.++.-++.+++
T Consensus 251 P----RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi-q-LCvqKLr~fiedsDqNLKYlgLlam~ 324 (877)
T KOG1059|consen 251 P----RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI-Q-LCVQKLRIFIEDSDQNLKYLGLLAMS 324 (877)
T ss_pred c----hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH-H-HHHHHHhhhhhcCCccHHHHHHHHHH
Confidence 3 344678889999998764 345555655553 3343332221111 1 24567777888999999999999999
Q ss_pred HhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCc-hhHHHH
Q 009568 312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAE-FDIKKE 390 (532)
Q Consensus 312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~ 390 (532)
.++...+...+. --..++++|.+. ++.+|-.|...|--+.. .+.+.. ++..|+..+...+ ...|.+
T Consensus 325 KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl~gmVs--kkNl~e-----IVk~LM~~~~~ae~t~yrde 391 (877)
T KOG1059|consen 325 KILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLLYGMVS--KKNLME-----IVKTLMKHVEKAEGTNYRDE 391 (877)
T ss_pred HHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHHHHHhh--hhhHHH-----HHHHHHHHHHhccchhHHHH
Confidence 999877654443 245789999998 99999999999888765 333433 3455665555444 478888
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcC
Q 009568 391 AAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV 424 (532)
Q Consensus 391 a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~ 424 (532)
.+.-+..+|+..+...+.-|-. .+..|+++..
T Consensus 392 ll~~II~iCS~snY~~ItdFEW--YlsVlveLa~ 423 (877)
T KOG1059|consen 392 LLTRIISICSQSNYQYITDFEW--YLSVLVELAR 423 (877)
T ss_pred HHHHHHHHhhhhhhhhhhhHHH--HHHHHHHHHh
Confidence 8888888887654333222211 3555555544
No 69
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.79 E-value=1.8e-06 Score=88.78 Aligned_cols=353 Identities=13% Similarity=0.124 Sum_probs=217.3
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 009568 78 AMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI 157 (532)
Q Consensus 78 ~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~ 157 (532)
.+++.+.+.|-+.|+.|+.-|..=+... ....+.--+..++..++++|.+.+ .++|..|+.|++-+++.-++.+-.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le-- 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLE-- 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHH--
Confidence 7888899999999999999888777653 333333334568899999999988 999999999999999744433221
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhh----hhh-hhHHHHHHHHHhhhccC
Q 009568 158 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN----ERA-KLSMLRNATWTLSNFCR 232 (532)
Q Consensus 158 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~----~~~-~~~~~~~a~~~L~~L~~ 232 (532)
..+..|+.-+-+.....|..+.-.|......-+..........+++.+...+. ... ...++..++..+..+..
T Consensus 85 --~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 85 --TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred --HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 12455665544444444544443333332222211222223334444444442 222 22345455544443332
Q ss_pred CCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCC-CccchhhHHHHHH
Q 009568 233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP-SPSVLIPALRTVG 311 (532)
Q Consensus 233 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~al~~L~ 311 (532)
.....-......++..++..+.++-..|+..++.+|+.++...+.. .. .+++..|..-|..+ .+.....-+.+|+
T Consensus 163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly-~~li~~Ll~~L~~~~q~~~~rt~Iq~l~ 238 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LY-VELIEHLLKGLSNRTQMSATRTYIQCLA 238 (1233)
T ss_pred hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 2211111244567777888888888899999999999998654422 11 25566666666543 4444455667788
Q ss_pred HhhcCCcchhHHHhhcCchHHHHHHh---cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc------
Q 009568 312 NIVTGDDFQTQCIITYGALPYLLGLL---THSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN------ 382 (532)
Q Consensus 312 nl~~~~~~~~~~~~~~~~l~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~------ 382 (532)
.++.........-. ..++|.+.+.. ... +.++|+.+..++..+...+|..+-+.+.. ++..++..+..
T Consensus 239 ~i~r~ag~r~~~h~-~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~pe-i~~l~l~yisYDPNy~y 315 (1233)
T KOG1824|consen 239 AICRQAGHRFGSHL-DKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVPE-IINLCLSYISYDPNYNY 315 (1233)
T ss_pred HHHHHhcchhhccc-chhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccchH-HHHHHHHHhccCCCCCC
Confidence 88765442221111 25677777777 555 78899999999998887766655443321 33333333310
Q ss_pred -------------------------C---chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHH
Q 009568 383 -------------------------A---EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVC 434 (532)
Q Consensus 383 -------------------------~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~a 434 (532)
+ ++.||++|+.++..++.. ..+....+.+ .+-+.++.-++...+.|..-+
T Consensus 316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~q-~l~p~lI~RfkEREEnVk~dv 393 (1233)
T KOG1824|consen 316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFYQ-TLGPALISRFKEREENVKADV 393 (1233)
T ss_pred CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHHH-HhCHHHHHHHHHHhhhHHHHH
Confidence 0 246999999999998875 4455555444 466788888888888888777
Q ss_pred HHHHHHHHHhh
Q 009568 435 LEGLENILKVG 445 (532)
Q Consensus 435 l~~L~~l~~~~ 445 (532)
..++..++..-
T Consensus 394 f~~yi~ll~qt 404 (1233)
T KOG1824|consen 394 FHAYIALLKQT 404 (1233)
T ss_pred HHHHHHHHHcC
Confidence 77777777543
No 70
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=5.9e-08 Score=93.49 Aligned_cols=304 Identities=13% Similarity=0.101 Sum_probs=194.8
Q ss_pred HHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC-CCCCcccccchHHHHHHhhcCCCHH
Q 009568 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEE 259 (532)
Q Consensus 181 ~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~ 259 (532)
+.+|-.++..-...|.-+....+.++|+++| ..++.-+.-.++..++|+.-.- +-.......+++..|+.++.+.|..
T Consensus 410 ~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDda 488 (743)
T COG5369 410 VLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDA 488 (743)
T ss_pred HHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhh
Confidence 3344455554455677777888999999999 5555555555666666666544 4445556689999999999999999
Q ss_pred HHHHHHHHHHHhccCChhHHH-HHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcc---hhHHHhhc----CchH
Q 009568 260 VLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF---QTQCIITY----GALP 331 (532)
Q Consensus 260 v~~~a~~~L~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~---~~~~~~~~----~~l~ 331 (532)
++....|.+..+..++++..+ ..+..-.+..++.+..++.+.++..++.++.|+...+.. ..+..++. -+..
T Consensus 489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk 568 (743)
T COG5369 489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFK 568 (743)
T ss_pred hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHH
Confidence 999999999999877654422 244456788999999999999999999999999874432 22222222 1455
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHhcC-----------chhHHHHHHHHHHHhh
Q 009568 332 YLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID-AGLVGPLVNLLQNA-----------EFDIKKEAAWAISNAT 399 (532)
Q Consensus 332 ~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~-----------~~~v~~~a~~aL~nl~ 399 (532)
.++..+... +|-.-...|+.|.++++.+....+.++. ..++..+..+|... ...+-..-..+..++.
T Consensus 569 ~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~ 647 (743)
T COG5369 569 RLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLS 647 (743)
T ss_pred HHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccc
Confidence 677777777 7777777799999998865554444442 33444444444321 1112122222233332
Q ss_pred cCCCHHHHHHHHHcCCh--HHHHhhcC---CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHH
Q 009568 400 SGGTHEQIKYLVREGCI--KPLCDLFV---CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKI 474 (532)
Q Consensus 400 ~~~~~~~~~~l~~~~~l--~~L~~lL~---~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l 474 (532)
...+ .... +.. +.+-.+=+ .++.++-....|.+.++.+..+..+... ..-+.+..+.+.|.-+-+
T Consensus 648 e~~d--~f~r----~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtr----atveR~~iL~~~G~~e~l 717 (743)
T COG5369 648 ENSD--KFKR----LVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTR----ATVERIQILCANGIREWL 717 (743)
T ss_pred cccc--cccc----ceecCCCccccccccCCCchhhhhccceEEEecccCccCCccch----hhHHHHHHHHHccHHHHH
Confidence 2111 1111 111 22222211 2334566677777777655433322111 233567889999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHh
Q 009568 475 ENLQSHDNNEIYEKAVKILETY 496 (532)
Q Consensus 475 ~~L~~~~~~~v~~~a~~il~~~ 496 (532)
..+|.|+++.|++++..+++.+
T Consensus 718 ~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 718 VKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HHHhccCcHHHHHHHHHHHHhh
Confidence 9999999999999999998754
No 71
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=3.4e-05 Score=70.49 Aligned_cols=339 Identities=15% Similarity=0.176 Sum_probs=227.7
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCc---hhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009568 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPP---IEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (532)
Q Consensus 76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~---~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 152 (532)
.|.+-..|..++..+...++..+..++...+... +..++..+++|.++.++...+ .++...|...+..++. .+..
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpaa 161 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPAA 161 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHHH
Confidence 3555666777888899999999999987532112 445668999999999999888 8999999999999998 7778
Q ss_pred HHHHHhCCChHHHH--HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhc
Q 009568 153 TKVVIDHGAVPIFV--KLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 230 (532)
Q Consensus 153 ~~~i~~~g~i~~L~--~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L 230 (532)
...+.+......+- .+-..-+.-.|-.+...+..+.+-++.....+-.+|.+..|..-+....|.-++.+++.....|
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 88888777665443 2323345667777888888998888888888888998888888885557888888999999999
Q ss_pred cCCCCCCCcccccchHHHHHHhhcC--CCHHHHHHHHHHHHHhccCChhH---HHHHHHh--CchHHHHHhhCCCCccch
Q 009568 231 CRGKPQPPFDQVRPALPALAQLVHS--NDEEVLTDACWALSYLSDGTNDK---IQAVIEA--GVCPRLVELLGHPSPSVL 303 (532)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~L~~lL~~--~d~~v~~~a~~~L~~l~~~~~~~---~~~~~~~--~~l~~L~~lL~~~~~~v~ 303 (532)
........+....+++..+..++.- ++|--.-.++...+.+.....-. -+.+.+. -++...+..+..+++...
T Consensus 242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai 321 (524)
T KOG4413|consen 242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI 321 (524)
T ss_pred HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence 8877667777778889988888863 34544444555554443221100 0111111 123444555677889999
Q ss_pred hhHHHHHHHhhcCCcchhHHHhhcCchHHH----HHHhcCCCchhHHHHHHHHHHHHhcC---CHHHHH---------H-
Q 009568 304 IPALRTVGNIVTGDDFQTQCIITYGALPYL----LGLLTHSHKKSIKKEACWTISNITAG---NRDQIQ---------A- 366 (532)
Q Consensus 304 ~~al~~L~nl~~~~~~~~~~~~~~~~l~~L----~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~---------~- 366 (532)
..|+.++|.+.+..+ ..+.++..| -|.. ......+ ...-+..+..+|.+++.. .++++. .
T Consensus 322 eaAiDalGilGSnte-GadlllkTg-ppaaehllarafdqn-ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrcl 398 (524)
T KOG4413|consen 322 EAAIDALGILGSNTE-GADLLLKTG-PPAAEHLLARAFDQN-AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCL 398 (524)
T ss_pred HHHHHHHHhccCCcc-hhHHHhccC-ChHHHHHHHHHhccc-ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHH
Confidence 999999999987554 555555544 3333 3333333 334566777888888752 222221 1
Q ss_pred HHH-------cCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHH-HHHHHcCChHHHHh
Q 009568 367 VID-------AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQI-KYLVREGCIKPLCD 421 (532)
Q Consensus 367 l~~-------~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~-~~l~~~~~l~~L~~ 421 (532)
+.+ ..-+..+..+++.+.++++..+..++..++.. |-.. ..+...+++..+.+
T Consensus 399 ifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq--PWalkeifakeefieiVtD 459 (524)
T KOG4413|consen 399 IFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ--PWALKEIFAKEEFIEIVTD 459 (524)
T ss_pred HHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC--cHHHHHHhcCccceeeecc
Confidence 111 12245566667777899999999999999874 3333 33334566655544
No 72
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=1.1e-06 Score=85.45 Aligned_cols=363 Identities=17% Similarity=0.122 Sum_probs=218.1
Q ss_pred hhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 009568 114 IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR 193 (532)
Q Consensus 114 i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 193 (532)
...+++|+.+.++.+.+ ..+++.|+..+.|++..- .......-..+...|.++..+.+..++. ++..+-.+..+-..
T Consensus 81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv~-k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKVA-KGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVT 157 (675)
T ss_pred HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHHh-ccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcc
Confidence 45578999999999998 899999999999998721 1111112223445666666655555544 34444444222111
Q ss_pred hHHHHHhcCChHHHHHHhh---hhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 009568 194 CRDLVLSQGALIPLLAQLN---ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSY 270 (532)
Q Consensus 194 ~~~~~~~~~~l~~L~~ll~---~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~ 270 (532)
-++. .--++.++.+|. ...++..+...+.-+..|-..++..-......+++.|..+|.++.++|+.-+=.+++.
T Consensus 158 e~~~---tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~ 234 (675)
T KOG0212|consen 158 ESAS---TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSE 234 (675)
T ss_pred cccc---ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 1110 112455555553 3457777777776666655443333344557788899999999999998666665655
Q ss_pred hcc---CChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCch-hHH
Q 009568 271 LSD---GTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK-SIK 346 (532)
Q Consensus 271 l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~ 346 (532)
+.. +++.. +--...++.++..+.++++.++..|+.-+..++.-.+... ...-+|++..++.++.+. .+ .++
T Consensus 235 fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~-e~~~i~ 309 (675)
T KOG0212|consen 235 FLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDT-EEMSIK 309 (675)
T ss_pred HHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCC-ccccHH
Confidence 431 22211 1112577888899999999999999888887776544332 234457888888888776 44 344
Q ss_pred HHHHHH---HHHHhcCCHHHHHHHHHc-CCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhh
Q 009568 347 KEACWT---ISNITAGNRDQIQAVIDA-GLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDL 422 (532)
Q Consensus 347 ~~a~~~---L~nl~~~~~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~l 422 (532)
..+..+ +..++. .+...+. ++. .++..|...+.++..+.|..++.-+..+-.....+.... ...+...|..-
T Consensus 310 ~~a~~~n~~l~~l~s-~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h--~~~if~tLL~t 385 (675)
T KOG0212|consen 310 EYAQMVNGLLLKLVS-SERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVH--NDSIFLTLLKT 385 (675)
T ss_pred HHHHHHHHHHHHHHh-hhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhh--ccHHHHHHHHh
Confidence 444333 222322 1111111 322 357788888888888999888877777766533332222 34578888899
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHH------HHhccHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 009568 423 FVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLV------EEAEGLEKIENLQSH-DNNEIYEKAVKILET 495 (532)
Q Consensus 423 L~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~l~~L~~~-~~~~v~~~a~~il~~ 495 (532)
|.+.+.+|+..++..+..++...+...... .......++ -+.-|-=.+.+|+.- +.+.||..-..|+++
T Consensus 386 Lsd~sd~vvl~~L~lla~i~~s~~~~~~~~----fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~ 461 (675)
T KOG0212|consen 386 LSDRSDEVVLLALSLLASICSSSNSPNLRK----FLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILER 461 (675)
T ss_pred hcCchhHHHHHHHHHHHHHhcCcccccHHH----HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhc
Confidence 999999999999999999987654421000 011111111 223334455555433 344577777777764
No 73
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.68 E-value=1.1e-06 Score=86.22 Aligned_cols=333 Identities=16% Similarity=0.152 Sum_probs=204.8
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCC-CCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIER-SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~-~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 153 (532)
.+..+++.|++..+.++..|+.....++.--+ ......+...|. .|.+.|.... |++.-..+.+++.|.+...-..
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~y-pEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDY-PEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCccc-HHHHHHHHHHHHHHhhhhcccc
Confidence 35667788899999999999887766643210 122333444444 3667777766 8888887777777765211000
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh---HHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhc
Q 009568 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC---RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 230 (532)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L 230 (532)
..---.|++|.|..+|++.+..+..+.+..++.||..+|++ |+-. .+.-.|+..| .+.+.+++++|..++..+
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~L-ks~nKeiRR~A~~tfG~I 757 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSL-KSWNKEIRRNATETFGCI 757 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHH-HHhhHHHHHhhhhhhhhH
Confidence 00112489999999999999999999999999999777653 2221 1334567777 778899999999999998
Q ss_pred cCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHH
Q 009568 231 CRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310 (532)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L 310 (532)
++.. --..++..|+.-|+..+-..+....-+++-.+..+... .++|.|+.=-..++..++.-.++++
T Consensus 758 s~ai------GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf-------sVlP~lm~dY~TPe~nVQnGvLkam 824 (975)
T COG5181 758 SRAI------GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF-------SVLPTLMSDYETPEANVQNGVLKAM 824 (975)
T ss_pred Hhhc------CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch-------hhHHHHHhcccCchhHHHHhHHHHH
Confidence 8763 11345666666666555554444444444433322211 4677777777778888998888888
Q ss_pred HHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHH--HHHHHHcCCHHHHHHHHhcCchhHH
Q 009568 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ--IQAVIDAGLVGPLVNLLQNAEFDIK 388 (532)
Q Consensus 311 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~--~~~l~~~~~i~~L~~ll~~~~~~v~ 388 (532)
+-+...........+ ..+.|.|-..|.+. ++.-|..|..++..++-+++.. .+..+. ++..|..-+-.+.|.+.
T Consensus 825 ~fmFeyig~~s~dYv-y~itPlleDAltDr-D~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sPhvi 900 (975)
T COG5181 825 CFMFEYIGQASLDYV-YSITPLLEDALTDR-DPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSPHVI 900 (975)
T ss_pred HHHHHHHHHHHHHHH-HHhhHHHHhhhccc-chHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCcHHH
Confidence 877754332222111 24678888888888 9999999999999998654321 122221 22223322333456665
Q ss_pred HHHH---HHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 009568 389 KEAA---WAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILK 443 (532)
Q Consensus 389 ~~a~---~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~ 443 (532)
.... .++.+.... .....| +.+-|-++...|+. ..|...+++.
T Consensus 901 ~~~~Eg~e~~~~~lg~--g~~m~Y---------v~qGLFHPs~~VRk-~ywtvyn~my 946 (975)
T COG5181 901 QSFDEGMESFATVLGS--GAMMKY---------VQQGLFHPSSTVRK-RYWTVYNIMY 946 (975)
T ss_pred HHHHHHHHHHHHHhcc--HHHHHH---------HHHhccCchHHHHH-HHHHHHhhhh
Confidence 4444 444444332 223333 33334456666664 4455555543
No 74
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.67 E-value=2.6e-06 Score=87.72 Aligned_cols=371 Identities=15% Similarity=0.161 Sum_probs=207.0
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH
Q 009568 86 DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF 165 (532)
Q Consensus 86 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L 165 (532)
.|.+++..|+.++..++..-. +... .--...+|.|++-|.. .-.+..|+++++.|+...-.....-+-..+++.+
T Consensus 582 ~DqeVkeraIscmgq~i~~fg-D~l~-~eL~~~L~il~eRl~n---EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l 656 (1233)
T KOG1824|consen 582 SDQEVKERAISCMGQIIANFG-DFLG-NELPRTLPILLERLGN---EITRLTAVKALTLIAMSPLDIDLSPVLTEILPEL 656 (1233)
T ss_pred ccHHHHHHHHHHHHHHHHHHh-hhhh-hhhHHHHHHHHHHHhc---hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHH
Confidence 456788888888887776421 1111 1112367777777765 4568889999999998432222122223567888
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCCCc-hhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccc
Q 009568 166 VKLLASPSDDVREQAVWALGNVAGDSP-RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRP 244 (532)
Q Consensus 166 ~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~ 244 (532)
..++......++..++.++-.+..... ......++ .++..+..++ ...+..+...++.+|..+....|..-......
T Consensus 657 ~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e-~vL~el~~Li-sesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~ 734 (1233)
T KOG1824|consen 657 ASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLE-AVLVELPPLI-SESDLHVTQLAVAFLTTLAIIQPSSLLKISNP 734 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH-HHHHHhhhhh-hHHHHHHHHHHHHHHHHHHhcccHHHHHHhhh
Confidence 888877666777777766666642211 11111111 1344455555 66678888889999998888876555555566
Q ss_pred hHHHHHHhhcCCCHH--HHHH--------------------------------------------HHHHHHHhccCChhH
Q 009568 245 ALPALAQLVHSNDEE--VLTD--------------------------------------------ACWALSYLSDGTNDK 278 (532)
Q Consensus 245 ~l~~L~~lL~~~d~~--v~~~--------------------------------------------a~~~L~~l~~~~~~~ 278 (532)
+++.++.+++++--. .... .+.|.+.++...++.
T Consensus 735 iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~ 814 (1233)
T KOG1824|consen 735 ILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQK 814 (1233)
T ss_pred hHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhcccc
Confidence 777777766654211 1111 111111111111100
Q ss_pred HHHHHHhCchHHHHHhhC--CCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHH
Q 009568 279 IQAVIEAGVCPRLVELLG--HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI 356 (532)
Q Consensus 279 ~~~~~~~~~l~~L~~lL~--~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 356 (532)
. ..+...++.-+. ..+..++.-|+..+|.+-.+.+... ..++-..++..+.++ +.+++..|..+||++
T Consensus 815 s-----~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~----~~e~~~~iieaf~sp-~edvksAAs~ALGsl 884 (1233)
T KOG1824|consen 815 S-----KSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP----QNELKDTIIEAFNSP-SEDVKSAASYALGSL 884 (1233)
T ss_pred c-----hhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc----chhhHHHHHHHcCCC-hHHHHHHHHHHhhhh
Confidence 0 011222222222 2355677788888888887665322 224455788999999 999999999999999
Q ss_pred hcCCHHH-HHHHHH----------------------------cCCHHHHHHHHh----cCchhHHHHHHHHHHHhhcCCC
Q 009568 357 TAGNRDQ-IQAVID----------------------------AGLVGPLVNLLQ----NAEFDIKKEAAWAISNATSGGT 403 (532)
Q Consensus 357 ~~~~~~~-~~~l~~----------------------------~~~i~~L~~ll~----~~~~~v~~~a~~aL~nl~~~~~ 403 (532)
+.|+-.. +..+++ ...++.+..+|. .....+|.-.+.+|+.++...
T Consensus 885 ~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~e- 963 (1233)
T KOG1824|consen 885 AVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIE- 963 (1233)
T ss_pred hcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCC-
Confidence 9975432 211111 001122222221 123334555555555555542
Q ss_pred HHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCH
Q 009568 404 HEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNN 483 (532)
Q Consensus 404 ~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~ 483 (532)
++ .+++.|...+.++.+..+..++.++.-.+..... ...++.... +...-.+..+++.
T Consensus 964 pe--------sLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~---------~id~~lk~~-----ig~fl~~~~dpDl 1021 (1233)
T KOG1824|consen 964 PE--------SLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQ---------PIDPLLKQQ-----IGDFLKLLRDPDL 1021 (1233)
T ss_pred hH--------HHHHHHHHHhcCCCcchhhhhhheeeeeecCCCC---------ccCHHHHHH-----HHHHHHHHhCCch
Confidence 22 3577888888888888888888877655543221 122222211 2344455667777
Q ss_pred HHHHHHHHHHHHh
Q 009568 484 EIYEKAVKILETY 496 (532)
Q Consensus 484 ~v~~~a~~il~~~ 496 (532)
+|+..|...+...
T Consensus 1022 ~VrrvaLvv~nSa 1034 (1233)
T KOG1824|consen 1022 EVRRVALVVLNSA 1034 (1233)
T ss_pred hHHHHHHHHHHHH
Confidence 7777776655543
No 75
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=1.5e-06 Score=84.57 Aligned_cols=318 Identities=12% Similarity=0.108 Sum_probs=200.5
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 154 (532)
.+++++.+++..|..++..|+..+-+++..-+.... ..-..+...+.++..+.+ ..++.. +..+-.+..+-.....
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~--~~Fn~iFdvL~klsaDsd-~~V~~~-aeLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVL--VYFNEIFDVLCKLSADSD-QNVRGG-AELLDRLIKDIVTESA 160 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcc--cchHHHHHHHHHHhcCCc-cccccH-HHHHHHHHHHhccccc
Confidence 578999999999999999999999888764322111 122335566777766665 455443 3333333221100000
Q ss_pred -HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHH-HhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568 155 -VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV-LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (532)
Q Consensus 155 -~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~-~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~ 232 (532)
.+-=.+++|.|-.-+...++..|...+.-|..+-.. |. .+++ .-..+++.|+..| .+++.+++..+-.+++++..
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~-~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL~ 237 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PD-LEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFLA 237 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-Cc-HHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHH
Confidence 111123455555555557788888777777766332 32 2232 1223567777778 67778888877777777765
Q ss_pred CC-CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCcc-chhhHHHH-
Q 009568 233 GK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPS-VLIPALRT- 309 (532)
Q Consensus 233 ~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-v~~~al~~- 309 (532)
.- ..+........++.++.-+.++++.++..|+.-+..+..-.+.. -...-+|++..+++++.+.+.. ++..+...
T Consensus 238 eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n 316 (675)
T KOG0212|consen 238 EIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQMVN 316 (675)
T ss_pred HHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHHHHHHHH
Confidence 54 33444456778899999999999999988877776666444432 2233457888888888876653 44333322
Q ss_pred --HHHhhcCCcchhHHHhhc-CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchh
Q 009568 310 --VGNIVTGDDFQTQCIITY-GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFD 386 (532)
Q Consensus 310 --L~nl~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 386 (532)
+..++.......+ ++. .++..+.+.+.+. ..+.|-.+..-+..+-...+.++- .....+++.|+.-|.+.+.+
T Consensus 317 ~~l~~l~s~~~~~~~--id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql~-~h~~~if~tLL~tLsd~sd~ 392 (675)
T KOG0212|consen 317 GLLLKLVSSERLKEE--IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQLL-VHNDSIFLTLLKTLSDRSDE 392 (675)
T ss_pred HHHHHHHhhhhhccc--cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchhh-hhccHHHHHHHHhhcCchhH
Confidence 2222221111111 332 3677888888888 888888888666666554454432 22456899999999999999
Q ss_pred HHHHHHHHHHHhhcCCCH
Q 009568 387 IKKEAAWAISNATSGGTH 404 (532)
Q Consensus 387 v~~~a~~aL~nl~~~~~~ 404 (532)
|...++..+.+++...+.
T Consensus 393 vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 393 VVLLALSLLASICSSSNS 410 (675)
T ss_pred HHHHHHHHHHHHhcCccc
Confidence 999999999999986543
No 76
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=2.3e-06 Score=86.83 Aligned_cols=338 Identities=17% Similarity=0.175 Sum_probs=213.0
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 154 (532)
.++.++....++++.++..|++.+..+-- ..++ .-+...+.+.+++.+ +.+|..|+-+..++-..+. +
T Consensus 87 avnt~~kD~~d~np~iR~lAlrtm~~l~v-------~~i~-ey~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~~---~ 154 (734)
T KOG1061|consen 87 AVNTFLKDCEDPNPLIRALALRTMGCLRV-------DKIT-EYLCDPLLKCLKDDD-PYVRKTAAVCVAKLFDIDP---D 154 (734)
T ss_pred hhhhhhccCCCCCHHHHHHHhhceeeEee-------hHHH-HHHHHHHHHhccCCC-hhHHHHHHHHHHHhhcCCh---h
Confidence 34444444455556655555554433321 1111 125667888888888 9999999999988877444 4
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (532)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~ 234 (532)
.+.+.|.++.|-.++.++++.+..+|+.+|..|....+..-.. .....++..+....+.-.-..-+..|-.++...
T Consensus 155 ~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~----~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~ 230 (734)
T KOG1061|consen 155 LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL----ELNPQLINKLLEALNECTEWGQIFILDCLAEYV 230 (734)
T ss_pred hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc----cccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcC
Confidence 5678899999999999999999999999999998665431111 122233322222223333344455666666665
Q ss_pred CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhh
Q 009568 235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 314 (532)
Q Consensus 235 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~ 314 (532)
|... .....++..+...|.+.++.+...+...+.++....... ...+-..+-+.++.++.... .+...|++-+.-+.
T Consensus 231 p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~-~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil 307 (734)
T KOG1061|consen 231 PKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQV-NELLFKKVAPPLVTLLSSES-EIQYVALRNINLIL 307 (734)
T ss_pred CCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHH-HHHHHHHhcccceeeecccc-hhhHHHHhhHHHHH
Confidence 5444 444567777888888888888888888888877654443 23333367777888887776 77777777666665
Q ss_pred cCCcchhHHH-------------hhcCchHHHHHHh----------------cCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009568 315 TGDDFQTQCI-------------ITYGALPYLLGLL----------------THSHKKSIKKEACWTISNITAGNRDQIQ 365 (532)
Q Consensus 315 ~~~~~~~~~~-------------~~~~~l~~L~~lL----------------~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 365 (532)
...+.....- ++..-++.+..+. ..- +.+..+++.+++++++..-.+.
T Consensus 308 ~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatev-D~~fvrkaIraig~~aik~e~~-- 384 (734)
T KOG1061|consen 308 QKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEV-DVDFVRKAVRAIGRLAIKAEQS-- 384 (734)
T ss_pred HhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhh-CHHHHHHHHHHhhhhhhhhhhh--
Confidence 4433211100 0001112222211 122 6777889999999998743321
Q ss_pred HHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHh
Q 009568 366 AVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC-PDPRIVTVCLEGLENILKV 444 (532)
Q Consensus 366 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~d~~v~~~al~~L~~l~~~ 444 (532)
.+.++.|++++..+...+..+++..+..+...... ..+ .++..++..+++ .+|+.+....|.+..-...
T Consensus 385 ----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~-~~~-----~vv~~l~~~~~sl~epeak~amiWilg~y~~~ 454 (734)
T KOG1061|consen 385 ----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPN-KYE-----SVVAILCENLDSLQEPEAKAALIWILGEYAER 454 (734)
T ss_pred ----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCC-chh-----hhhhhhcccccccCChHHHHHHHHHHhhhhhc
Confidence 56889999999988777888888899888875432 112 245566666654 6777777777777655443
No 77
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.64 E-value=1.1e-05 Score=84.34 Aligned_cols=258 Identities=16% Similarity=0.129 Sum_probs=174.5
Q ss_pred hHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHH
Q 009568 204 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVI 283 (532)
Q Consensus 204 l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~ 283 (532)
++.+-.+. .+.+..++...+.....+.--- +....+....|.+...++..++.|+.+..+.+..+-...+..-...+
T Consensus 400 lp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~--~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~ 476 (759)
T KOG0211|consen 400 LPEVQVLV-LDNALHVRSALASVITGLSPIL--PKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTV 476 (759)
T ss_pred hHHHHHHH-hcccchHHHHHhccccccCccC--CcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhh
Confidence 34444443 4555666665555554444322 23334567788888899999999999999888666544333323345
Q ss_pred HhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc--CCH
Q 009568 284 EAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA--GNR 361 (532)
Q Consensus 284 ~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~ 361 (532)
....++.+..+-.+..+.++...++.+..++.... ..+++...-+.+...+.+. ...+++.|+..+.-++. |..
T Consensus 477 s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G~~ 552 (759)
T KOG0211|consen 477 SNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVETFGSE 552 (759)
T ss_pred hhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhCcc
Confidence 55778888888888889999999999988886433 2344545556666666665 67899999998888876 321
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 009568 362 DQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENI 441 (532)
Q Consensus 362 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l 441 (532)
-.+ ...++.++.....++...|...+.++.-++...+.+. ....+++.+.++..++.+.|+..++..|..+
T Consensus 553 w~~-----~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei----~~~~Llp~~~~l~~D~vanVR~nvak~L~~i 623 (759)
T KOG0211|consen 553 WAR-----LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI----TCEDLLPVFLDLVKDPVANVRINVAKHLPKI 623 (759)
T ss_pred hhH-----HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH----HHHHHhHHHHHhccCCchhhhhhHHHHHHHH
Confidence 111 2366777777776678899999999988776444333 2335789999999999999999999999988
Q ss_pred HHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHH
Q 009568 442 LKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKIL 493 (532)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il 493 (532)
...-... ..+......++.|-.+++.+++..|..+.
T Consensus 624 ~~~L~~~----------------~~~~~v~pll~~L~~d~~~dvr~~a~~a~ 659 (759)
T KOG0211|consen 624 LKLLDES----------------VRDEEVLPLLETLSSDQELDVRYRAILAF 659 (759)
T ss_pred HhhcchH----------------HHHHHHHHHHHHhccCcccchhHHHHHHH
Confidence 8754332 12233346667777777777776665443
No 78
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.64 E-value=1.6e-06 Score=90.05 Aligned_cols=254 Identities=17% Similarity=0.201 Sum_probs=194.7
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 153 (532)
+.+|.+++.|-|+ .-++.|+..|.+++... ...+..-..-|+.|..+++|+++- .+++..-+.+-+.|..-++.+.
T Consensus 472 eQLPiVLQVLLSQ--vHRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ 547 (1387)
T KOG1517|consen 472 EQLPIVLQVLLSQ--VHRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQ 547 (1387)
T ss_pred HhcchHHHHHHHH--HHHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhH
Confidence 4667777777663 34677899999998764 566777778899999999999998 8999999999999888788888
Q ss_pred HHHHhCCChHHHHHhhCC-C--CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhc
Q 009568 154 KVVIDHGAVPIFVKLLAS-P--SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 230 (532)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~-~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L 230 (532)
..+++.++-..+++.|.. + +++-|..|+.+|+.++..-+.-+..+++.+.+...+..+..+..+-++.-++-+|+.|
T Consensus 548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L 627 (1387)
T KOG1517|consen 548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL 627 (1387)
T ss_pred HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 889988888888888876 2 3688999999999999887777888889888888888885545677888899999999
Q ss_pred cCCCCCCC-cccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC----ChhHHHHH------------HHhCch---HH
Q 009568 231 CRGKPQPP-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG----TNDKIQAV------------IEAGVC---PR 290 (532)
Q Consensus 231 ~~~~~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~----~~~~~~~~------------~~~~~l---~~ 290 (532)
-.+.+... .-....+-..|..+|.++-++|+..|+.+|+.+..+ .+++...+ ++.-+. -.
T Consensus 628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ 707 (1387)
T KOG1517|consen 628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS 707 (1387)
T ss_pred hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence 88864333 334467788899999999999999999999998865 33332222 121122 25
Q ss_pred HHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchH
Q 009568 291 LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALP 331 (532)
Q Consensus 291 L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~ 331 (532)
++.++++..+-++.+..-+|..++.+...+...+.-...++
T Consensus 708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~n~~~~ 748 (1387)
T KOG1517|consen 708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLP 748 (1387)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhhhhccc
Confidence 66677888888888888888888877765544443333333
No 79
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=3.8e-05 Score=76.46 Aligned_cols=328 Identities=17% Similarity=0.193 Sum_probs=209.0
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 154 (532)
.+..+++.+..+.+.+|.....++..+.......... -+.+.+.+++.... ..-+..|++.+..+..+. ...
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~-----~~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g~--~i~ 168 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGE-----YVLELLLELLTSTK-IAERAGAAYGLAGLVNGL--GIE 168 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHH-----HHHHHHHHHhcccc-HHHHhhhhHHHHHHHcCc--HHh
Confidence 4677888888888999998888888776543222222 25777888888777 788999999999988754 334
Q ss_pred HHHhCCChHHHHHhhCCCCHHH-HHHHHHHHHHhhC-CCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568 155 VVIDHGAVPIFVKLLASPSDDV-REQAVWALGNVAG-DSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (532)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v-~~~a~~~L~nl~~-~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~ 232 (532)
.+.+.+++..|...+.+..... ++.+..+.-..+. -++.....+. ..++.++... .+..+.++..+..+...+.+
T Consensus 169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv--~~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIV--PILPSILTNF-GDKINKVREAAVEAAKAIMR 245 (569)
T ss_pred hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHH--hhHHHHHHHh-hccchhhhHHHHHHHHHHHH
Confidence 5666788899998887744333 3323322222221 1111111111 1244444444 44567777777776666554
Q ss_pred CCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHH
Q 009568 233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN 312 (532)
Q Consensus 233 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~n 312 (532)
.- ....++.++|.++.-+....+.....++..++.++...+.+.... -..++|.+...|.+..+.++..+..+|-.
T Consensus 246 ~~---~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~-lp~iiP~lsevl~DT~~evr~a~~~~l~~ 321 (569)
T KOG1242|consen 246 CL---SAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLC-LPDLIPVLSEVLWDTKPEVRKAGIETLLK 321 (569)
T ss_pred hc---CcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHH-HhHhhHHHHHHHccCCHHHHHHHHHHHHH
Confidence 32 122334566666665555577888899999998888888775544 44899999999999999999999998888
Q ss_pred hhcCCcc-hhHHHh------------------------------hcCchHHHHHHh----cCCCchhHHHHHHHHHHHHh
Q 009568 313 IVTGDDF-QTQCII------------------------------TYGALPYLLGLL----THSHKKSIKKEACWTISNIT 357 (532)
Q Consensus 313 l~~~~~~-~~~~~~------------------------------~~~~l~~L~~lL----~~~~~~~v~~~a~~~L~nl~ 357 (532)
+++--+. .++.++ +.-.+..++.+| ... +..+++.++.++.|++
T Consensus 322 ~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eR-st~~kr~t~~IidNm~ 400 (569)
T KOG1242|consen 322 FGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAER-STSIKRKTAIIIDNMC 400 (569)
T ss_pred HHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhc-cchhhhhHHHHHHHHH
Confidence 8753221 111110 111233333333 333 5677899999999999
Q ss_pred c--CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcC
Q 009568 358 A--GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV 424 (532)
Q Consensus 358 ~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~ 424 (532)
. .++..+..++.. ++|.|-..+....|++|..+++||+.+...-.... + .+.++-+.+.+.
T Consensus 401 ~LveDp~~lapfl~~-Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~---f--~d~~p~l~e~~~ 463 (569)
T KOG1242|consen 401 KLVEDPKDLAPFLPS-LLPGLKENLDDAVPEVRAVAARALGALLERLGEVS---F--DDLIPELSETLT 463 (569)
T ss_pred HhhcCHHHHhhhHHH-HhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhc---c--cccccHHHHhhc
Confidence 7 346555555543 67777777777789999999999988876422111 1 345555555554
No 80
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=2.5e-05 Score=79.18 Aligned_cols=284 Identities=20% Similarity=0.240 Sum_probs=181.9
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCC
Q 009568 124 EFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA 203 (532)
Q Consensus 124 ~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~ 203 (532)
++..+.. +-+|..|+.++..+-+-+++....+. ..+-.+|.+.++.|.-.|+.++-.+|-+.- +.+ .+-
T Consensus 150 ~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~qL~-----e~I~~LLaD~splVvgsAv~AF~evCPerl---dLI--Hkn 218 (968)
T KOG1060|consen 150 KAVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQLE-----EVIKKLLADRSPLVVGSAVMAFEEVCPERL---DLI--HKN 218 (968)
T ss_pred HHhcCCc-HHHHHHHHHhhHHHhcCChhhHHHHH-----HHHHHHhcCCCCcchhHHHHHHHHhchhHH---HHh--hHH
Confidence 4445566 88999999999998887777776554 555667888888888888888888875422 111 223
Q ss_pred hHHHHHHhhhhhhhHHHHHHHHHhhhccCCC-CCC-------------------------C---cccccchHHHHHHhhc
Q 009568 204 LIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQP-------------------------P---FDQVRPALPALAQLVH 254 (532)
Q Consensus 204 l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~-------------------------~---~~~~~~~l~~L~~lL~ 254 (532)
...++++| .+-+.=-+..++.+|..-|+.. +.+ + ..-..-++...-.+|.
T Consensus 219 yrklC~ll-~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~ 297 (968)
T KOG1060|consen 219 YRKLCRLL-PDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ 297 (968)
T ss_pred HHHHHhhc-cchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh
Confidence 55566666 2222222222333333333332 111 0 0111234555567788
Q ss_pred CCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHH
Q 009568 255 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLL 334 (532)
Q Consensus 255 ~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~ 334 (532)
+.++.|...++.++++++.... . ..++..|+.+|.++ ..++...+..+..++...+. ++ .|.+-
T Consensus 298 S~n~sVVmA~aql~y~lAP~~~--~-----~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~----lF----~P~lK 361 (968)
T KOG1060|consen 298 SRNPSVVMAVAQLFYHLAPKNQ--V-----TKIAKALVRLLRSN-REVQYVVLQNIATISIKRPT----LF----EPHLK 361 (968)
T ss_pred cCCcHHHHHHHhHHHhhCCHHH--H-----HHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchh----hh----hhhhh
Confidence 8999999999999999984432 1 25677888877754 46777788888877765442 22 24444
Q ss_pred HHhc-CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 009568 335 GLLT-HSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE 413 (532)
Q Consensus 335 ~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 413 (532)
.++- ++....++..-..+|++|+... .+.. +++.+...+.+.+.++...|..||+.++.... . +..
T Consensus 362 sFfv~ssDp~~vk~lKleiLs~La~es--ni~~-----ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~-s-----v~~ 428 (968)
T KOG1060|consen 362 SFFVRSSDPTQVKILKLEILSNLANES--NISE-----ILRELQTYIKSSDRSFAAAAVKAIGRCASRIG-S-----VTD 428 (968)
T ss_pred ceEeecCCHHHHHHHHHHHHHHHhhhc--cHHH-----HHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC-c-----hhh
Confidence 4442 2312356666677888887532 1222 45677778888887888888899988876432 1 223
Q ss_pred CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 009568 414 GCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAE 448 (532)
Q Consensus 414 ~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~ 448 (532)
.++.-|+.++++.|..|+..+...|..+++.....
T Consensus 429 tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~ 463 (968)
T KOG1060|consen 429 TCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAE 463 (968)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHH
Confidence 47888889999999989888888888888776554
No 81
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.61 E-value=1.8e-06 Score=82.07 Aligned_cols=272 Identities=17% Similarity=0.187 Sum_probs=181.4
Q ss_pred hhHhhhCCcHHHHHHhhcCCCC-HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHh
Q 009568 110 IEEVIQSGVVPRFVEFLMREDY-PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNV 187 (532)
Q Consensus 110 ~~~~i~~g~i~~Lv~lL~~~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl 187 (532)
.+.+...|.+..|+.++..++. ..++.+|+..|-.+.. .++++.++..| +..++.+-+. ..+++....+.+|.++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 3455667899999999998872 3569999999999886 77888888877 5555554443 5688999999999999
Q ss_pred hCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC--CCCCcccccchHHHHHHhhcCCCHHHHHHHH
Q 009568 188 AGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQLVHSNDEEVLTDAC 265 (532)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~ 265 (532)
..++......+++.|++..++-.. ...++.+++.+..+|.|++-+. .....+..+.+-..|..+-.+.|+-++.++|
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 998888888888999999988877 6678999999999999998775 2222333345556677777777888999999
Q ss_pred HHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhH
Q 009568 266 WALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSI 345 (532)
Q Consensus 266 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v 345 (532)
.+++.++.+.. .-..+..+|.+..+-.++..-++.-... --...+.+. ...-++.|+.+|.+. .-+.
T Consensus 329 lAV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~-R~EA 395 (832)
T KOG3678|consen 329 LAVAVLATNKE-VEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSN-RLEA 395 (832)
T ss_pred HHHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcc-hhhh
Confidence 99999987644 2244556666665555555544321110 000111111 113577888899866 5455
Q ss_pred HHHHHHHHHHHhc-CC-HHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009568 346 KKEACWTISNITA-GN-RDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA 398 (532)
Q Consensus 346 ~~~a~~~L~nl~~-~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 398 (532)
+.-+++-++.=+. .. ....+.+-+-|.|..|-++..+.+.--.+-|..+|.-+
T Consensus 396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI 450 (832)
T ss_pred hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 5444444443222 11 11122334667888888888876654444444444433
No 82
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.60 E-value=1.2e-05 Score=79.19 Aligned_cols=241 Identities=17% Similarity=0.053 Sum_probs=163.9
Q ss_pred cHHHHHhhhc-CCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568 75 SLPAMVAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (532)
Q Consensus 75 ~l~~lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 153 (532)
.++.++..|. .+++.+...++..+... + .+ ..+..|+..|.+.+ +.++..++.+|+.+-.
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~---~--~~-------~~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~------ 115 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQ---E--DA-------LDLRSVLAVLQAGP-EGLCAGIQAALGWLGG------ 115 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhcc---C--Ch-------HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCc------
Confidence 4566777774 45566665555444321 1 11 13788888888877 7899998888876544
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (532)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~ 233 (532)
....+.|+.+|.+.++.++..++.+++.... ...+.+..+| ++.++.++..++.+|..+...
T Consensus 116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPRR 177 (410)
T ss_pred -----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence 2356788888888888888888877776311 1345677777 688889999999999887764
Q ss_pred CCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHh
Q 009568 234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313 (532)
Q Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl 313 (532)
..++.|...+.+.++.|+..+++++..+.. + ..+..+..+...........+..+++..
T Consensus 178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLEGGPHRQRLLVLLAVA 236 (410)
T ss_pred ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhccCccHHHHHHHHHHhC
Confidence 456667788888899999999998876643 2 2233444444444444443333344333
Q ss_pred hcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHH
Q 009568 314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAW 393 (532)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 393 (532)
+.+ ..++.|..++.++ .++..++++++.+-. +. .++.|+..+... .++..|..
T Consensus 237 --~~~---------~a~~~L~~ll~d~---~vr~~a~~AlG~lg~--p~---------av~~L~~~l~d~--~~aR~A~e 289 (410)
T TIGR02270 237 --GGP---------DAQAWLRELLQAA---ATRREALRAVGLVGD--VE---------AAPWCLEAMREP--PWARLAGE 289 (410)
T ss_pred --Cch---------hHHHHHHHHhcCh---hhHHHHHHHHHHcCC--cc---------hHHHHHHHhcCc--HHHHHHHH
Confidence 111 5677888888865 389999999997743 33 567888877644 49999999
Q ss_pred HHHHhhc
Q 009568 394 AISNATS 400 (532)
Q Consensus 394 aL~nl~~ 400 (532)
++..|+-
T Consensus 290 A~~~ItG 296 (410)
T TIGR02270 290 AFSLITG 296 (410)
T ss_pred HHHHhhC
Confidence 9999875
No 83
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=7e-07 Score=86.29 Aligned_cols=282 Identities=16% Similarity=0.239 Sum_probs=193.3
Q ss_pred HhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009568 112 EVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191 (532)
Q Consensus 112 ~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~ 191 (532)
.+.+..+.+.|+++|+.++ ..+...+...++|....-+..+..+++.|+|..|+.++.+.+..++....|.+..+...+
T Consensus 426 gL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmync 504 (743)
T COG5369 426 GLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNC 504 (743)
T ss_pred hccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcC
Confidence 3456778999999999887 677888888999988877788889999999999999999989999999999999997554
Q ss_pred ch-hHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCC--CCcccc------cchHHHHHHhhcCCCHHHHH
Q 009568 192 PR-CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ--PPFDQV------RPALPALAQLVHSNDEEVLT 262 (532)
Q Consensus 192 ~~-~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~--~~~~~~------~~~l~~L~~lL~~~d~~v~~ 262 (532)
.. .+-..+..-++..++.+. .++.-.++..++..|.|+..+... ...... .-+...|+..++..+|-...
T Consensus 505 q~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~ 583 (743)
T COG5369 505 QKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEIL 583 (743)
T ss_pred cchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhh
Confidence 33 233456666789999988 778889999999999999874311 111111 22556677777777777777
Q ss_pred HHHHHHHHhccCChhHHHHHHH-hCchHHHHHhhC----C-------CCccchhhHHHHHHHhhcCCcchhHHHhhcCch
Q 009568 263 DACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLG----H-------PSPSVLIPALRTVGNIVTGDDFQTQCIITYGAL 330 (532)
Q Consensus 263 ~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~----~-------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l 330 (532)
..|..|.+++..++.....+.. ..++..+..+|. . ....+..+......++....+.....+.-.
T Consensus 584 ~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~--- 660 (743)
T COG5369 584 EGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTT--- 660 (743)
T ss_pred hhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecC---
Confidence 7788888888666655444443 344444444431 1 123344555555556655444332222210
Q ss_pred HHHHHHhc--CCCchhHHHHHHHHHHHHhc---C------CHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009568 331 PYLLGLLT--HSHKKSIKKEACWTISNITA---G------NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA 398 (532)
Q Consensus 331 ~~L~~lL~--~~~~~~v~~~a~~~L~nl~~---~------~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 398 (532)
|.+=..=. ...+.+.--+..|.+.|+.- + +.+.++.+.+.|+-+.|..+...+++.||..+-.||.++
T Consensus 661 p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 661 PHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred CCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 11111111 11144577778888888653 2 226677777888888777777777889999999999887
No 84
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.55 E-value=3.7e-06 Score=80.11 Aligned_cols=265 Identities=14% Similarity=0.089 Sum_probs=171.9
Q ss_pred ccHHHHHhhhcCCChH--HHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009568 74 ESLPAMVAGVWSDDSS--LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE 151 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~--~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 151 (532)
+.+..|++++++++.+ ++.+|.+.|..++.. .+.+.+...| +..++.+-+....++++...+.+|.++-.++.+
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 5688899999998855 589999999999885 3455555544 444444444444479999999999999999999
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhc
Q 009568 152 NTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 230 (532)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L 230 (532)
....++..|++..++-.....++.+..+|+.+|+|++.+. ...+..+++..+.+-|+.+- .+.|.-++..+|.+...|
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence 9999999999999999888888999999999999998554 34455666666666666655 566888899999999999
Q ss_pred cCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHH
Q 009568 231 CRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310 (532)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L 310 (532)
+..+.........+.+..+-.++.+-|+.--.. --...+.+ ...+-++.|+.+|.+...+.+..+..-+
T Consensus 335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG--------~~~d~LqRLvPlLdS~R~EAq~i~AF~l 403 (832)
T KOG3678|consen 335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQG--------RGPDDLQRLVPLLDSNRLEAQCIGAFYL 403 (832)
T ss_pred hhhhhhhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhcc--------CChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence 988744443334444444444554444432111 00001111 0113467788888865433332222222
Q ss_pred HHhh--cCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 009568 311 GNIV--TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN 355 (532)
Q Consensus 311 ~nl~--~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 355 (532)
+.=+ ..-....+.+-+-|.++.|-.+.+++ +..--+.|-.+|.-
T Consensus 404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtv 449 (832)
T KOG3678|consen 404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTV 449 (832)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHH
Confidence 1111 11112344555668889998888876 55433444444433
No 85
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=4.1e-05 Score=77.72 Aligned_cols=358 Identities=15% Similarity=0.159 Sum_probs=228.6
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 154 (532)
.+|.+|+...+.+.+++...-..|-+.+.. .+.. .+. -|..+-+-|.+++ +.+|..|+++|..|-.
T Consensus 72 ~Fp~VVKNVaskn~EVKkLVyvYLlrYAEe--qpdL-ALL---SIntfQk~L~DpN-~LiRasALRvlSsIRv------- 137 (968)
T KOG1060|consen 72 LFPAVVKNVASKNIEVKKLVYVYLLRYAEE--QPDL-ALL---SINTFQKALKDPN-QLIRASALRVLSSIRV------- 137 (968)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhc--CCCc-eee---eHHHHHhhhcCCc-HHHHHHHHHHHHhcch-------
Confidence 578889988899988888877777777653 2222 122 3678888899888 8899888887766543
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (532)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~ 234 (532)
.++..=++-++-+...++.+-||..|+.++-.+-+-.+...+.+ +..+-.+| .+.++-+.-.|+.++-..|-+
T Consensus 138 p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LL-aD~splVvgsAv~AF~evCPe- 210 (968)
T KOG1060|consen 138 PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLL-ADRSPLVVGSAVMAFEEVCPE- 210 (968)
T ss_pred hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHh-cCCCCcchhHHHHHHHHhchh-
Confidence 11111112333345566889999999999999876666655543 23333344 777888999999999888854
Q ss_pred CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC---ChhHHHH----------------------HHHh---C
Q 009568 235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG---TNDKIQA----------------------VIEA---G 286 (532)
Q Consensus 235 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~---~~~~~~~----------------------~~~~---~ 286 (532)
....+.+-...+.++|.+-++.-+..++..|...+.. .+..... ..+. -
T Consensus 211 ---rldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~l 287 (968)
T KOG1060|consen 211 ---RLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKL 287 (968)
T ss_pred ---HHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHH
Confidence 3455566677777777766666666666666554421 1100000 0000 1
Q ss_pred chHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009568 287 VCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQA 366 (532)
Q Consensus 287 ~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 366 (532)
++..+-.+|.+.++.+...++.+...++...+ . ..+...|+.+|.+ +..++.-.+..+..++...+....
T Consensus 288 LL~stkpLl~S~n~sVVmA~aql~y~lAP~~~--~-----~~i~kaLvrLLrs--~~~vqyvvL~nIa~~s~~~~~lF~- 357 (968)
T KOG1060|consen 288 LLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ--V-----TKIAKALVRLLRS--NREVQYVVLQNIATISIKRPTLFE- 357 (968)
T ss_pred HHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH--H-----HHHHHHHHHHHhc--CCcchhhhHHHHHHHHhcchhhhh-
Confidence 23444456677888888889999888885332 1 2456788898876 456787777777777765555333
Q ss_pred HHHcCCHHHHHHHH-hcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568 367 VIDAGLVGPLVNLL-QNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 444 (532)
Q Consensus 367 l~~~~~i~~L~~ll-~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~ 444 (532)
|.+-.+. .+. ...++..-+..|.+++...+... +++-|..+.++.|..+...++.+|......
T Consensus 358 -------P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~--------ILrE~q~YI~s~d~~faa~aV~AiGrCA~~ 422 (968)
T KOG1060|consen 358 -------PHLKSFFVRSSDPTQVKILKLEILSNLANESNISE--------ILRELQTYIKSSDRSFAAAAVKAIGRCASR 422 (968)
T ss_pred -------hhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHH--------HHHHHHHHHhcCchhHHHHHHHHHHHHHHh
Confidence 2333332 223 34566667788888887544322 566778888888888888888887776543
Q ss_pred hhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009568 445 GEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLE 499 (532)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 499 (532)
..... ...+.-|..|..++++-|-..|...|.++...
T Consensus 423 ~~sv~------------------~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~ 459 (968)
T KOG1060|consen 423 IGSVT------------------DTCLNGLVQLLSSHDELVVAEAVVVIKRLLQK 459 (968)
T ss_pred hCchh------------------hHHHHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence 32211 22345566666666777777777777777654
No 86
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=2.7e-05 Score=81.10 Aligned_cols=303 Identities=14% Similarity=0.207 Sum_probs=200.5
Q ss_pred hccHHHHHhhhc-CCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009568 73 LESLPAMVAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE 151 (532)
Q Consensus 73 ~~~l~~lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 151 (532)
++.++-+...|. ..++.++..|+..+..+.+. .+....+...|++..|+.+|.+. |..+..++.+|..+++ +++
T Consensus 1770 ig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S-~~~ 1844 (2235)
T KOG1789|consen 1770 IGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSS-NGQ 1844 (2235)
T ss_pred hcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhc-CcH
Confidence 455666676666 46788999999999888765 57788899999999999999875 6889999999999999 788
Q ss_pred hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC---chhHHHHHh----------cCChHHHHHHhhh-hhh
Q 009568 152 NTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDS---PRCRDLVLS----------QGALIPLLAQLNE-RAK 216 (532)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~---~~~~~~~~~----------~~~l~~L~~ll~~-~~~ 216 (532)
......+.|++..+..++.. .++..|.+++..++.+..+. |..+-.++. .+.-+..+..+.. +++
T Consensus 1845 i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~En 1924 (2235)
T KOG1789|consen 1845 IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSEN 1924 (2235)
T ss_pred HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCC
Confidence 88888889999888887655 67899999999999997643 332222111 0011333333321 112
Q ss_pred hH------HHHHHHHHhhhcc----CCC---CCC--------------------------------------Ccccccch
Q 009568 217 LS------MLRNATWTLSNFC----RGK---PQP--------------------------------------PFDQVRPA 245 (532)
Q Consensus 217 ~~------~~~~a~~~L~~L~----~~~---~~~--------------------------------------~~~~~~~~ 245 (532)
++ .+......+..+. +.. |.. +.....++
T Consensus 1925 PELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~L 2004 (2235)
T KOG1789|consen 1925 PELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTEL 2004 (2235)
T ss_pred cccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHH
Confidence 21 2222222222221 111 000 00111333
Q ss_pred HHHHHHhhcCCCH--HHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHH
Q 009568 246 LPALAQLVHSNDE--EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQC 323 (532)
Q Consensus 246 l~~L~~lL~~~d~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~ 323 (532)
+..+..++..+++ ........++..+....+...+.+-..|.+|.++..+...+..+-..|++.|-.++.. .-+.+.
T Consensus 2005 Lek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen-~~C~~A 2083 (2235)
T KOG1789|consen 2005 LEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSEN-QFCCDA 2083 (2235)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhc-cHHHHH
Confidence 4444455543332 2233333344444445555555566669999999999988888889999999999874 346667
Q ss_pred HhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcC
Q 009568 324 IITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNA 383 (532)
Q Consensus 324 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~ 383 (532)
+.....+..+++.++.. +...--||.+|..+.. ...+.+...++.|++|.|+.+|+..
T Consensus 2084 MA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2084 MAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 76667777788888754 3445588888888876 4456667777899999999999864
No 87
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=4.3e-05 Score=69.36 Aligned_cols=278 Identities=16% Similarity=0.164 Sum_probs=165.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHH--hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009568 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI--DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD 196 (532)
Q Consensus 119 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~--~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 196 (532)
+..++.++.+.+ |.++..|...+..++.. ..+.+. +...++.+.+++....+ .+.|+.+|.|++.+. ..|.
T Consensus 5 l~elv~ll~~~s-P~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~-~l~~ 77 (353)
T KOG2973|consen 5 LVELVELLHSLS-PPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE-ELRK 77 (353)
T ss_pred HHHHHHHhccCC-hHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH-HHHH
Confidence 456789999998 99999999999988874 111121 22457788888877555 788999999997654 4667
Q ss_pred HHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q 009568 197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN 276 (532)
Q Consensus 197 ~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~ 276 (532)
.+++. .+..++..+ .++........|..|+||++.. +.+..+...+..+ .+
T Consensus 78 ~ll~~-~~k~l~~~~-~~p~~~lad~~cmlL~NLs~~~---------~~~~~ll~~~~~~------------------~~ 128 (353)
T KOG2973|consen 78 KLLQD-LLKVLMDML-TDPQSPLADLICMLLSNLSRDD---------DEVAALLTNLTEK------------------KD 128 (353)
T ss_pred HHHHH-HHHHHHHHh-cCcccchHHHHHHHHHHhccCc---------hHHHHHHHhcccc------------------cc
Confidence 76665 566666666 4444567778888999999874 1122222111100 00
Q ss_pred hHHHHHHHhCchHHHHHhhCCCC--ccchhhHHHHHHHhhcCCcchhHHHhhcCchH-HHHHHhcCCCchhHHH-HHHHH
Q 009568 277 DKIQAVIEAGVCPRLVELLGHPS--PSVLIPALRTVGNIVTGDDFQTQCIITYGALP-YLLGLLTHSHKKSIKK-EACWT 352 (532)
Q Consensus 277 ~~~~~~~~~~~l~~L~~lL~~~~--~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~-~L~~lL~~~~~~~v~~-~a~~~ 352 (532)
.+++.....+.+++- ..-......+++||+.... .+..+.+...++ ..+..+.+. +..+|+ ..+.+
T Consensus 129 --------~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~-gR~l~~~~k~~p~~kll~ft~~-~s~vRr~Gvagt 198 (353)
T KOG2973|consen 129 --------SGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEA-GRKLLLEPKRFPDQKLLPFTSE-DSQVRRGGVAGT 198 (353)
T ss_pred --------cchHHHHHHHhCcccccccchhHHHHHHHHHhhhhh-hhhHhcchhhhhHhhhhccccc-chhhhccchHHH
Confidence 122222222222211 1112233455666665433 444444443221 122223333 555655 45677
Q ss_pred HHHHhcCCHHHHHHHH-HcCCHHHHH---------------------HHHh-----cCchhHHHHHHHHHHHhhcCCCHH
Q 009568 353 ISNITAGNRDQIQAVI-DAGLVGPLV---------------------NLLQ-----NAEFDIKKEAAWAISNATSGGTHE 405 (532)
Q Consensus 353 L~nl~~~~~~~~~~l~-~~~~i~~L~---------------------~ll~-----~~~~~v~~~a~~aL~nl~~~~~~~ 405 (532)
|.|+|.....+-..+- ..+++|.++ +++. .+++.+|+..+.+|.-++. +..
T Consensus 199 lkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca--T~~ 276 (353)
T KOG2973|consen 199 LKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA--TRA 276 (353)
T ss_pred HHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh--hhH
Confidence 8887765433322111 112222222 3333 2378899999999999988 668
Q ss_pred HHHHHHHcCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHh
Q 009568 406 QIKYLVREGCIKPLCDLFVC-PDPRIVTVCLEGLENILKV 444 (532)
Q Consensus 406 ~~~~l~~~~~l~~L~~lL~~-~d~~v~~~al~~L~~l~~~ 444 (532)
.++++.+.|+.+.+-.+-+. +|++++..+......+++.
T Consensus 277 GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~~ 316 (353)
T KOG2973|consen 277 GREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVRL 316 (353)
T ss_pred hHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHhc
Confidence 88999999999988887764 6788888777766666654
No 88
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.47 E-value=5.4e-05 Score=74.64 Aligned_cols=242 Identities=19% Similarity=0.046 Sum_probs=170.1
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009568 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 197 (532)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 197 (532)
.++.++..|.....+++...+++++..... + .++..|+..|.+.++.++..++.+|+.+-. +
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--~----- 116 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG--R----- 116 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--h-----
Confidence 688889999544337887776666542221 1 137899999999999999999999997621 1
Q ss_pred HHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChh
Q 009568 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND 277 (532)
Q Consensus 198 ~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~ 277 (532)
.....|+.++ .+.++.++..++.++.... ....+.+..+|++.++.++..++.+++.+...
T Consensus 117 ----~a~~~L~~~L-~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--- 177 (410)
T TIGR02270 117 ----QAEPWLEPLL-AASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR--- 177 (410)
T ss_pred ----HHHHHHHHHh-cCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc---
Confidence 2366788888 7778888888887776622 12356888899999999999999999987632
Q ss_pred HHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 009568 278 KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 357 (532)
Q Consensus 278 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 357 (532)
..++.|...+.+.++.|+..|+..++.+-. + ..+..+....... .......+..++...
T Consensus 178 --------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~-g~~~~~~l~~~lal~- 236 (410)
T TIGR02270 178 --------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLE-GGPHRQRLLVLLAVA- 236 (410)
T ss_pred --------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhcc-CccHHHHHHHHHHhC-
Confidence 456677888999999999999999976643 2 2234555544444 333444443344333
Q ss_pred cCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHH
Q 009568 358 AGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEG 437 (532)
Q Consensus 358 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~ 437 (532)
+.+ ..++.|..+++.+. ++..++++++.+-.. ..++.|+..++++ .+...+-++
T Consensus 237 -~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p------------~av~~L~~~l~d~--~~aR~A~eA 290 (410)
T TIGR02270 237 -GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGDV------------EAAPWCLEAMREP--PWARLAGEA 290 (410)
T ss_pred -Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCCc------------chHHHHHHHhcCc--HHHHHHHHH
Confidence 333 25677888887644 999999999977442 2577777777643 488999999
Q ss_pred HHHHHH
Q 009568 438 LENILK 443 (532)
Q Consensus 438 L~~l~~ 443 (532)
+..|.-
T Consensus 291 ~~~ItG 296 (410)
T TIGR02270 291 FSLITG 296 (410)
T ss_pred HHHhhC
Confidence 998864
No 89
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=0.00014 Score=66.25 Aligned_cols=272 Identities=14% Similarity=0.124 Sum_probs=176.6
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHH
Q 009568 205 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIE 284 (532)
Q Consensus 205 ~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~ 284 (532)
..++.++ .+.++.++..|+.-+..++......-.......++.+.+++...++ ...|..++.|++.... ..+.+++
T Consensus 6 ~elv~ll-~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~~ll~ 81 (353)
T KOG2973|consen 6 VELVELL-HSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRKKLLQ 81 (353)
T ss_pred HHHHHHh-ccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHHHHHH
Confidence 4566777 7888999999999998888772222222235577788888887777 7788899999986643 3355555
Q ss_pred hCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHh--h----cCchHHHHHHhcCCCchh-HHHHHHHHHHHHh
Q 009568 285 AGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCII--T----YGALPYLLGLLTHSHKKS-IKKEACWTISNIT 357 (532)
Q Consensus 285 ~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~--~----~~~l~~L~~lL~~~~~~~-v~~~a~~~L~nl~ 357 (532)
. ++..++..+.++.+.+...++..++|++...+.....+. . .|++........++.+.. --...+.+++|++
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS 160 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence 5 888899999999888999999999999986664332222 1 455555555555543321 2235567778887
Q ss_pred cCCHHHHHHHHHcCC--HHHHHHHHhcCchhHH-HHHHHHHHHhhcCCCH---------HHHHHHHH-------------
Q 009568 358 AGNRDQIQAVIDAGL--VGPLVNLLQNAEFDIK-KEAAWAISNATSGGTH---------EQIKYLVR------------- 412 (532)
Q Consensus 358 ~~~~~~~~~l~~~~~--i~~L~~ll~~~~~~v~-~~a~~aL~nl~~~~~~---------~~~~~l~~------------- 412 (532)
.. +.....+.+... ...+..+-. .+..+| ...+..|.|++..... ....+++-
T Consensus 161 ~~-~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm 238 (353)
T KOG2973|consen 161 QF-EAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDM 238 (353)
T ss_pred hh-hhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHH
Confidence 64 333445554332 233333333 445555 4556778887764311 11111110
Q ss_pred cCChHHHHhhcC-----CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHH-hcCCCHHHH
Q 009568 413 EGCIKPLCDLFV-----CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENL-QSHDNNEIY 486 (532)
Q Consensus 413 ~~~l~~L~~lL~-----~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L-~~~~~~~v~ 486 (532)
.+...-| ++|. .+|+.++...+++|..++. ...-++.+..-|+...+..+ ...+++++.
T Consensus 239 ~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLca--------------T~~GRe~lR~kgvYpilRElhk~e~ded~~ 303 (353)
T KOG2973|consen 239 AKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCA--------------TRAGREVLRSKGVYPILRELHKWEEDEDIR 303 (353)
T ss_pred hcCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHh--------------hhHhHHHHHhcCchHHHHHHhcCCCcHHHH
Confidence 0112222 4443 3678999999999988864 22347888999999999998 567899999
Q ss_pred HHHHHHHHHhCC
Q 009568 487 EKAVKILETYWL 498 (532)
Q Consensus 487 ~~a~~il~~~~~ 498 (532)
..+..+++-...
T Consensus 304 ~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 304 EACEQVVQMLVR 315 (353)
T ss_pred HHHHHHHHHHHh
Confidence 999988876665
No 90
>PF05536 Neurochondrin: Neurochondrin
Probab=98.42 E-value=0.00057 Score=70.39 Aligned_cols=380 Identities=16% Similarity=0.142 Sum_probs=226.3
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCc--hhHhhhCCcHHHHHHhhcCCC------CHHHHHHHHHHHHHHh
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPP--IEEVIQSGVVPRFVEFLMRED------YPQLQFEAAWALTNIA 146 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~--~~~~i~~g~i~~Lv~lL~~~~------~~~~~~~a~~~L~~l~ 146 (532)
.+...+..|++.+.+.++.|+-.+.+++...+... .+.+.+.=+.+.+-++|.++. ....+.-|+.+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 56888999999888889999999999998642211 233556656677778887622 1567888889999998
Q ss_pred cCChhhH--HHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHH
Q 009568 147 SGTSENT--KVVIDHGAVPIFVKLLASPSD-DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNA 223 (532)
Q Consensus 147 ~~~~~~~--~~i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a 223 (532)
. .++.. ..++ +-||.|+..+.+.+. .+...|..+|..++. .+.-+..+++.|.++.|+..+.+ .+.....+
T Consensus 86 ~-~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~A 159 (543)
T PF05536_consen 86 R-DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN--QSFQMEIA 159 (543)
T ss_pred C-ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh--CcchHHHH
Confidence 8 55443 2333 578999999988666 999999999999995 45567888899999999999844 55566777
Q ss_pred HHHhhhccCCCCC----CCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhH-HHHH----HHhCchHHHHHh
Q 009568 224 TWTLSNFCRGKPQ----PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK-IQAV----IEAGVCPRLVEL 294 (532)
Q Consensus 224 ~~~L~~L~~~~~~----~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~-~~~~----~~~~~l~~L~~l 294 (532)
+.+|.+++..... ........+++.+...+.......+-.+|..|..+....+.. .... .-..+...+..+
T Consensus 160 l~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i 239 (543)
T PF05536_consen 160 LNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI 239 (543)
T ss_pred HHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence 7777777665321 112223456666777777666777778888888877554211 0111 112344445555
Q ss_pred hCC-CCccchhhHHHHHHHhhcCCc-------------chhHHHhhcC------chHHHHHHhcCCCchhHH--HHHHH-
Q 009568 295 LGH-PSPSVLIPALRTVGNIVTGDD-------------FQTQCIITYG------ALPYLLGLLTHSHKKSIK--KEACW- 351 (532)
Q Consensus 295 L~~-~~~~v~~~al~~L~nl~~~~~-------------~~~~~~~~~~------~l~~L~~lL~~~~~~~v~--~~a~~- 351 (532)
|++ ..+.-|.+++...+.+..... ...-.+++.- .++.|....+.+...... -.+|+
T Consensus 240 L~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~ 319 (543)
T PF05536_consen 240 LQSRLTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFS 319 (543)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHH
Confidence 655 356667777777777764311 0111111100 011111111111011111 11222
Q ss_pred H----HHHHhc--------CCHHHHHHHHH--cCCHHHHHHHHhcC------chhHHHHHHHHHHHhhcCCCHHHHHHHH
Q 009568 352 T----ISNITA--------GNRDQIQAVID--AGLVGPLVNLLQNA------EFDIKKEAAWAISNATSGGTHEQIKYLV 411 (532)
Q Consensus 352 ~----L~nl~~--------~~~~~~~~l~~--~~~i~~L~~ll~~~------~~~v~~~a~~aL~nl~~~~~~~~~~~l~ 411 (532)
+ ++.++. -.++....+.. .+.+...+.+|..- ++.....+.++|+....-.+....+.+
T Consensus 320 ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v- 398 (543)
T PF05536_consen 320 ILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEV- 398 (543)
T ss_pred HHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHH-
Confidence 1 222222 12344444432 23455566666542 333666788888888775454444443
Q ss_pred HcCChHHHHhhcCCCCH----------HHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHH
Q 009568 412 REGCIKPLCDLFVCPDP----------RIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIEN 476 (532)
Q Consensus 412 ~~~~l~~L~~lL~~~d~----------~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~ 476 (532)
.++++.++.+...... +.+...+=+|..+.. ....+..+...||...+-+
T Consensus 399 -~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~--------------e~~gr~~l~~~~g~~~l~~ 458 (543)
T PF05536_consen 399 -YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTA--------------EEEGRKILLSNGGWKLLCD 458 (543)
T ss_pred -HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhc--------------cHHHHHHHHhCCcHHHHHH
Confidence 3688999988874322 355555666666653 2234666666777666554
No 91
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.00015 Score=73.42 Aligned_cols=149 Identities=12% Similarity=0.107 Sum_probs=95.1
Q ss_pred CchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHH
Q 009568 328 GALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQ 406 (532)
Q Consensus 328 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~ 406 (532)
|++--++.+|.++ +-++|+.+....-.++. .+.+.+-.+++..+...--. =..++.+.|+....++..++..- ++.
T Consensus 317 ~l~mDvLrvLss~-dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~F-p~~ 393 (948)
T KOG1058|consen 317 GLIMDVLRVLSSP-DLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKF-PEV 393 (948)
T ss_pred HHHHHHHHHcCcc-cccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcC-hHH
Confidence 3444566777777 88899888887777765 44444433333222111110 01123467888888888887753 343
Q ss_pred HHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHH
Q 009568 407 IKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIY 486 (532)
Q Consensus 407 ~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~ 486 (532)
.. .+++.|++.+.+.++.....++..+...++..++.. ...++ ..++.+-.-.+..++
T Consensus 394 aa-----tvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr------------~~ii~-----~l~~~~~~irS~ki~ 451 (948)
T KOG1058|consen 394 AA-----TVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR------------ASIIE-----KLLETFPQIRSSKIC 451 (948)
T ss_pred HH-----HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH------------HHHHH-----HHHHhhhhhcccccc
Confidence 33 478999999999999888888888888877655432 22222 233444444566788
Q ss_pred HHHHHHHHHhCCCCc
Q 009568 487 EKAVKILETYWLEED 501 (532)
Q Consensus 487 ~~a~~il~~~~~~~~ 501 (532)
.-|.||+..|...+.
T Consensus 452 rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 452 RGALWILGEYCEGLS 466 (948)
T ss_pred hhHHHHHHHHHhhhH
Confidence 899999999988766
No 92
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.37 E-value=0.00018 Score=70.32 Aligned_cols=250 Identities=28% Similarity=0.312 Sum_probs=172.8
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 154 (532)
.++.+++.+.+.++.++..|+..+..+-... .+|.+..++.+.+ +.+|..|+.+|+.+-. +
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~------------av~~l~~~l~d~~-~~vr~~a~~aLg~~~~--~---- 104 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGSEE------------AVPLLRELLSDED-PRVRDAAADALGELGD--P---- 104 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhchHH------------HHHHHHHHhcCCC-HHHHHHHHHHHHccCC--h----
Confidence 5788999999999999999999977765432 7999999999998 8999999998887764 2
Q ss_pred HHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhh-----------hhHHHHH
Q 009568 155 VVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA-----------KLSMLRN 222 (532)
Q Consensus 155 ~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~-----------~~~~~~~ 222 (532)
..++.|+.++. +++..+|..+.++|+.+-... .+.+++..+.+.. ...++..
T Consensus 105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~ 168 (335)
T COG1413 105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAA 168 (335)
T ss_pred -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence 35788999888 589999999999999983211 2666777763322 1134555
Q ss_pred HHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccc
Q 009568 223 ATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSV 302 (532)
Q Consensus 223 a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v 302 (532)
+...+..+-.. ..++.+...+...+..++..+..+++.+.... ..+.+.+...+.++++.+
T Consensus 169 a~~~l~~~~~~----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~v 229 (335)
T COG1413 169 AAEALGELGDP----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEV 229 (335)
T ss_pred HHHHHHHcCCh----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHH
Confidence 55555554432 45667778888888888888888888776543 245567777788888888
Q ss_pred hhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc
Q 009568 303 LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN 382 (532)
Q Consensus 303 ~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~ 382 (532)
+..++..++.+-.. ...+.+...+... +..++..+...+..+ +.. .....+...+.+
T Consensus 230 r~~~~~~l~~~~~~-----------~~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~~---------~~~~~l~~~~~~ 286 (335)
T COG1413 230 RKAALLALGEIGDE-----------EAVDALAKALEDE-DVILALLAAAALGAL--DLA---------EAALPLLLLLID 286 (335)
T ss_pred HHHHHHHhcccCcc-----------hhHHHHHHHHhcc-chHHHHHHHHHhccc--Cch---------hhHHHHHHHhhc
Confidence 88888888765532 2345667777666 555555554444411 111 123445555666
Q ss_pred CchhHHHHHHHHHHHhhcC
Q 009568 383 AEFDIKKEAAWAISNATSG 401 (532)
Q Consensus 383 ~~~~v~~~a~~aL~nl~~~ 401 (532)
....++..+..++..+...
T Consensus 287 ~~~~~~~~~~~~l~~~~~~ 305 (335)
T COG1413 287 EANAVRLEAALALGQIGQE 305 (335)
T ss_pred chhhHHHHHHHHHHhhccc
Confidence 6677777777777766553
No 93
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=2.5e-05 Score=77.72 Aligned_cols=221 Identities=14% Similarity=0.128 Sum_probs=149.1
Q ss_pred HHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCC-----hhHHHH
Q 009568 207 LLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT-----NDKIQA 281 (532)
Q Consensus 207 L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~-----~~~~~~ 281 (532)
+..+. .+.+..++..|+..|..|..+. ...+.+....++++.+++..|+..|+..++...... .+.-..
T Consensus 203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 55555 6778888888888888887642 223455667788899999999998866665444222 111111
Q ss_pred HHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHH--hcC
Q 009568 282 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI--TAG 359 (532)
Q Consensus 282 ~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl--~~~ 359 (532)
-....++..+...+.+.+..++..|..+||.+-.-+++.....++..++..+-..=... +......++- ++|
T Consensus 277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ah------krpk~l~s~GewSsG 350 (823)
T KOG2259|consen 277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAH------KRPKALYSSGEWSSG 350 (823)
T ss_pred hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcc------cchHHHHhcCCcccC
Confidence 22236788899999999999999999999999877666555555544333222111100 1111111111 111
Q ss_pred -----------CHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCH
Q 009568 360 -----------NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDP 428 (532)
Q Consensus 360 -----------~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~ 428 (532)
..+.-..++..|..-.++.-+.+.-.+||..|+.+++.++... +.+... .++.|++++.++..
T Consensus 351 k~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~FA~~-----aldfLvDMfNDE~~ 424 (823)
T KOG2259|consen 351 KEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-PGFAVR-----ALDFLVDMFNDEIE 424 (823)
T ss_pred ccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-CCcHHH-----HHHHHHHHhccHHH
Confidence 1122335677788888888888888899999999999998863 333333 68899999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 009568 429 RIVTVCLEGLENILKVG 445 (532)
Q Consensus 429 ~v~~~al~~L~~l~~~~ 445 (532)
.|+..++.+|..|....
T Consensus 425 ~VRL~ai~aL~~Is~~l 441 (823)
T KOG2259|consen 425 VVRLKAIFALTMISVHL 441 (823)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999887653
No 94
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=0.00011 Score=67.27 Aligned_cols=263 Identities=14% Similarity=0.174 Sum_probs=181.6
Q ss_pred HHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh----hHHHHHHHhCchHHHHHhhCCC
Q 009568 223 ATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN----DKIQAVIEAGVCPRLVELLGHP 298 (532)
Q Consensus 223 a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~----~~~~~~~~~~~l~~L~~lL~~~ 298 (532)
++.+|-.|..... ......+..|.|-.-|..+|..|...+|..++.+...++ ..+..+++.++++.++.++...
T Consensus 63 cVscLERLfkake--gahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge 140 (524)
T KOG4413|consen 63 CVSCLERLFKAKE--GAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE 140 (524)
T ss_pred HHHHHHHHHhhcc--chhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC
Confidence 4444544444321 122234566777777788899999999999999987665 2344566889999999999999
Q ss_pred CccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHH--HHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHH
Q 009568 299 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLL--GLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 376 (532)
Q Consensus 299 ~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~--~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L 376 (532)
+.++...|...+..++...+ ....++++..+..+. ++-... +.-+|......+..+.+-+++.....-..|++..|
T Consensus 141 ddeVAkAAiesikrialfpa-aleaiFeSellDdlhlrnlaakc-ndiaRvRVleLIieifSiSpesaneckkSGLldlL 218 (524)
T KOG4413|consen 141 DDEVAKAAIESIKRIALFPA-ALEAIFESELLDDLHLRNLAAKC-NDIARVRVLELIIEIFSISPESANECKKSGLLDLL 218 (524)
T ss_pred cHHHHHHHHHHHHHHHhcHH-HHHHhcccccCChHHHhHHHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHH
Confidence 99999999999999998654 556677777665543 333333 56678888888888888888888888889999999
Q ss_pred HHHHhc-CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhhhhhhhccC
Q 009568 377 VNLLQN-AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC--PDPRIVTVCLEGLENILKVGEAEKNMGT 453 (532)
Q Consensus 377 ~~ll~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~--~d~~v~~~al~~L~~l~~~~~~~~~~~~ 453 (532)
..-|.. .|.-|+..+......++. .....+++.+.|+++.++.++.. .||--...++-....++....-...
T Consensus 219 eaElkGteDtLVianciElvteLae--teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdv--- 293 (524)
T KOG4413|consen 219 EAELKGTEDTLVIANCIELVTELAE--TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDV--- 293 (524)
T ss_pred HHHhcCCcceeehhhHHHHHHHHHH--HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhc---
Confidence 888877 477788888888888877 44567778899999999999974 4554444456666555543222211
Q ss_pred CCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009568 454 ATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLE 499 (532)
Q Consensus 454 ~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 499 (532)
.+...++.+. -.++..-++.+..+++....|.+.+..+=+.
T Consensus 294 ---seeaiceali--iaidgsfEmiEmnDpdaieaAiDalGilGSn 334 (524)
T KOG4413|consen 294 ---SEEAICEALI--IAIDGSFEMIEMNDPDAIEAAIDALGILGSN 334 (524)
T ss_pred ---CHHHHHHHHH--HHHHhhHHhhhcCCchHHHHHHHHHHhccCC
Confidence 0111222211 1234444455677888888888887765443
No 95
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.32 E-value=0.0002 Score=69.78 Aligned_cols=317 Identities=17% Similarity=0.094 Sum_probs=194.2
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhh-hhHHHHHHHHHhhhccCCCCCCCcc
Q 009568 162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA-KLSMLRNATWTLSNFCRGKPQPPFD 240 (532)
Q Consensus 162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~~~~~a~~~L~~L~~~~~~~~~~ 240 (532)
.+.+..++-+++.+++..+.+++..+..+.... ..+.+.++-..++..|..+. +..=+.+|+..+..+...+. ....
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l-~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~~ 104 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISDEESL-QILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPKE 104 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHH-HHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Cccc
Confidence 344444444445999999999999988776543 45556665555666664332 33446678777777776632 2223
Q ss_pred cccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcch
Q 009568 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 320 (532)
Q Consensus 241 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~ 320 (532)
.-.+++..++.+..+.++..+..++.+++.++-.++ +.+..+|++..|...+.++...+....+.++-.+...+. .
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~-t 180 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR-T 180 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc-h
Confidence 457888999999999999999999999999998777 457789999999999988666677788888888886443 4
Q ss_pred hHHHhhcCchHHHHHHhcCCC------ch--hHHHHHHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHHHhcCchhHHHHH
Q 009568 321 TQCIITYGALPYLLGLLTHSH------KK--SIKKEACWTISNITAGNRDQIQAVIDA-GLVGPLVNLLQNAEFDIKKEA 391 (532)
Q Consensus 321 ~~~~~~~~~l~~L~~lL~~~~------~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~a 391 (532)
++++...--++.+..-+.+.. +. +.-..+..++..+...=+..+....+. ..+..|+..|..+.+++|+..
T Consensus 181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~I 260 (371)
T PF14664_consen 181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAI 260 (371)
T ss_pred hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHH
Confidence 444544344556655554330 22 233445555655554322211111111 367889999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHH------cCCh---HHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHH
Q 009568 392 AWAISNATSGGTHEQIKYLVR------EGCI---KPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYA 462 (532)
Q Consensus 392 ~~aL~nl~~~~~~~~~~~l~~------~~~l---~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~ 462 (532)
...+..+..-..+.....+.. .|-. ..+..-........-... ..-.+++.. ...-..
T Consensus 261 ldll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~-~~~~~l~~~------------y~aLll 327 (371)
T PF14664_consen 261 LDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRS-SKRPNLVNH------------YLALLL 327 (371)
T ss_pred HHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccc-cccccHHHH------------HHHHHH
Confidence 999998876543322211111 1111 000000000000000000 000011100 111134
Q ss_pred HHHHHhccHHHHHHHhcCC-CHHHHHHHHHHHHHhC
Q 009568 463 QLVEEAEGLEKIENLQSHD-NNEIYEKAVKILETYW 497 (532)
Q Consensus 463 ~~~~~~g~~~~l~~L~~~~-~~~v~~~a~~il~~~~ 497 (532)
..+.++|.++.|-.+..+. ++.+..+|.-+|.+++
T Consensus 328 ~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 328 AILIEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 5577899999999997766 8999999999988775
No 96
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.32 E-value=0.00013 Score=76.58 Aligned_cols=387 Identities=13% Similarity=0.086 Sum_probs=256.1
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009568 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV 155 (532)
Q Consensus 76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 155 (532)
.+..-+.-+..++.++..++..+.++++.. .......+++|.+.++..++. ..++..|...+.++...-....
T Consensus 239 r~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~----~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~-- 311 (759)
T KOG0211|consen 239 RPIVQSLCQDDTPMVRRAVASNLGNIAKVL----ESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD-- 311 (759)
T ss_pred HHHHHhhccccchhhHHHHHhhhHHHHHHH----HHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch--
Confidence 344444555667888888888888887642 225667889999999999887 7899999988888875211110
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCC
Q 009568 156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP 235 (532)
Q Consensus 156 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~ 235 (532)
=+...+.+.+++...+++..++.........+...-.. .......+++...++ .....+.+..+..-...++...+
T Consensus 312 d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~-~~~~~e~r~a~a~~~~~l~~~l~ 387 (759)
T KOG0211|consen 312 DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLL-KDEEWEVRYAIAKKVQKLACYLN 387 (759)
T ss_pred hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHh-cchhhhhhHHhhcchHHHhhhcC
Confidence 12234568888888888888887766665555421111 111122355666666 44445555555544445554432
Q ss_pred --CCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHh
Q 009568 236 --QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313 (532)
Q Consensus 236 --~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl 313 (532)
.........++|.+-.+..+.+..++...+..+..+..-.+. ...+ ....|.+...+.+..+.++....+.+..+
T Consensus 388 ~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti-~~llp~~~~~l~de~~~V~lnli~~ls~~ 464 (759)
T KOG0211|consen 388 ASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTI-SELLPLLIGNLKDEDPIVRLNLIDKLSLL 464 (759)
T ss_pred cccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCc-cccChhhhhhcchhhHHHHHhhHHHHHHH
Confidence 122233456678888888888888888887777766533220 1011 14567777788888888999888887777
Q ss_pred hcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHH
Q 009568 314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAW 393 (532)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 393 (532)
-..++...........+|.+..+-... ...++.+..+.+-.++.... ..+++...-+.+...+.+....+++.|+.
T Consensus 465 ~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~ 540 (759)
T KOG0211|consen 465 EEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAAR 540 (759)
T ss_pred HhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 665554444455667788888888777 78999999999988876322 23333334455555666677899999999
Q ss_pred HHHHhhcCCCH-HHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHH
Q 009568 394 AISNATSGGTH-EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLE 472 (532)
Q Consensus 394 aL~nl~~~~~~-~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 472 (532)
.+..++..-.. ..+. ..++.+..+...++...+...+.++..+.....+. .++ ...++
T Consensus 541 ~l~~l~~~~G~~w~~~-----~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e-----------i~~-----~~Llp 599 (759)
T KOG0211|consen 541 NLPALVETFGSEWARL-----EEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE-----------ITC-----EDLLP 599 (759)
T ss_pred HhHHHHHHhCcchhHH-----HhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH-----------HHH-----HHHhH
Confidence 99888763222 2222 35777777777777888899999998777665332 123 34468
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCCCCc
Q 009568 473 KIENLQSHDNNEIYEKAVKILETYWLEED 501 (532)
Q Consensus 473 ~l~~L~~~~~~~v~~~a~~il~~~~~~~~ 501 (532)
.+..+..++.++|+-.+.+.+..+...-.
T Consensus 600 ~~~~l~~D~vanVR~nvak~L~~i~~~L~ 628 (759)
T KOG0211|consen 600 VFLDLVKDPVANVRINVAKHLPKILKLLD 628 (759)
T ss_pred HHHHhccCCchhhhhhHHHHHHHHHhhcc
Confidence 88999999999999988888877765443
No 97
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00062 Score=68.63 Aligned_cols=324 Identities=18% Similarity=0.145 Sum_probs=192.6
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009568 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV 155 (532)
Q Consensus 76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 155 (532)
.-.-+++|+++--...+-+--.+.-++.. +.+..+. ++..+.+=|.+.+ +....-|+.+++|+.+ .+.+..
T Consensus 76 hmEaV~LLss~kysEKqIGYl~is~L~n~-n~dl~kl-----vin~iknDL~srn-~~fv~LAL~~I~niG~--re~~ea 146 (938)
T KOG1077|consen 76 HMEAVNLLSSNKYSEKQIGYLFISLLLNE-NSDLMKL-----VINSIKNDLSSRN-PTFVCLALHCIANIGS--REMAEA 146 (938)
T ss_pred hHHHHHHhhcCCccHHHHhHHHHHHHHhc-chHHHHH-----HHHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHH
Confidence 34556666665544444444444444432 1222222 3444555556666 7889999999999986 455555
Q ss_pred HHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568 156 VIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (532)
Q Consensus 156 i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~ 233 (532)
+. +-+-++|.+ ..+-++..++.+|..+-..+|. .+-..+....++.+| .+.+..+...+...+..|+..
T Consensus 147 ~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~ 217 (938)
T KOG1077|consen 147 FA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVKK 217 (938)
T ss_pred hh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHh-CccccceeeehHHHHHHHHHc
Confidence 54 223355655 3467888888888888776654 232335677888888 555566666677777777766
Q ss_pred CCCCCcccccchHHHHHHhhc-------------CCCHHHHHHHHHHHHHhccCCh-hHHHHHHHhCchHHHHHhhCCC-
Q 009568 234 KPQPPFDQVRPALPALAQLVH-------------SNDEEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLGHP- 298 (532)
Q Consensus 234 ~~~~~~~~~~~~l~~L~~lL~-------------~~d~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~- 298 (532)
.|..........+..|.++.. -+.|.+...+++.|.++-...+ .....+. .++..++...+.+
T Consensus 218 ~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~ 295 (938)
T KOG1077|consen 218 NPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPP 295 (938)
T ss_pred CCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCc
Confidence 543322222222222222221 2457788888888887743222 1111111 3444454444421
Q ss_pred -C-----ccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 009568 299 -S-----PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGL 372 (532)
Q Consensus 299 -~-----~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 372 (532)
. .......+.-.-+++...+..-..+. ..+..|-.+|.+. ...+|.-|...++.++...+ .++.+-.+
T Consensus 296 ~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~~-s~davK~h-- 369 (938)
T KOG1077|consen 296 KSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHR-ETNIRYLALESMCKLASSEF-SIDAVKKH-- 369 (938)
T ss_pred cccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcc-cccchhhhHHHHHHHHhccc-hHHHHHHH--
Confidence 1 11233344444455554443333222 4677888999888 88999999999999987532 23333333
Q ss_pred HHHHHHHHh-cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHH
Q 009568 373 VGPLVNLLQ-NAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 433 (532)
Q Consensus 373 i~~L~~ll~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~ 433 (532)
...++..|. ..|..+|+.|+..|..+|...+..+ ++.-|+++|.+.|+.++.-
T Consensus 370 ~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~--------IV~elLqYL~tAd~siree 423 (938)
T KOG1077|consen 370 QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQ--------IVAELLQYLETADYSIREE 423 (938)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHH--------HHHHHHHHHhhcchHHHHH
Confidence 567788888 5689999999999999998654332 4556777777777766643
No 98
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.29 E-value=8.2e-05 Score=72.51 Aligned_cols=314 Identities=18% Similarity=0.170 Sum_probs=191.4
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHHH
Q 009568 77 PAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKV 155 (532)
Q Consensus 77 ~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~ 155 (532)
+.+...+-+++.+++..|.+.+|.++.. ....+.+.+.++--.++.-|..++ +..=|.+|+..+..+..-.. ..+
T Consensus 28 ~~i~~~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~- 103 (371)
T PF14664_consen 28 ERIQCMLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPK- 103 (371)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Ccc-
Confidence 4444445556699999999999999985 466777777776666666666543 35568899999888876311 111
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCC
Q 009568 156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP 235 (532)
Q Consensus 156 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~ 235 (532)
.+..|++..++.+..++++.++..|+.+|+.++..+|. .+...|++..|++.+.+ ...++...++.++..+...+.
T Consensus 104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALID-GSFSISESLLDTLLYLLDSPR 179 (371)
T ss_pred cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhCCcc
Confidence 23457889999999999999999999999999988775 67889999999999954 444488889999999998864
Q ss_pred CCCcccccchHHHHHHhh-cC------CCH--HHHHHHHHHHHHhccCChhHHHHHHH-hCchHHHHHhhCCCCccchhh
Q 009568 236 QPPFDQVRPALPALAQLV-HS------NDE--EVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLGHPSPSVLIP 305 (532)
Q Consensus 236 ~~~~~~~~~~l~~L~~lL-~~------~d~--~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~v~~~ 305 (532)
.........-+..+..-+ .. ++. +....+..++..+...=+.......+ ...+..|+..|..+++.++..
T Consensus 180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 444333322233322222 11 122 34444555555444322221111111 146778888999898889998
Q ss_pred HHHHHHHhhcCCcc-hhHHH------hhcCch---HHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHH
Q 009568 306 ALRTVGNIVTGDDF-QTQCI------ITYGAL---PYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVG 374 (532)
Q Consensus 306 al~~L~nl~~~~~~-~~~~~------~~~~~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~ 374 (532)
.+.++..+..-... ..... ...+-. ..+..-.... ........ .--.++..+ ..-....+++.|+++
T Consensus 260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~-~~~~~~~~-~~~~~l~~~y~aLll~ili~~gL~~ 337 (371)
T PF14664_consen 260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEA-KSILPHRS-SKRPNLVNHYLALLLAILIEAGLLE 337 (371)
T ss_pred HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhccccccc-ccccCccc-cccccHHHHHHHHHHHHHHHcChHH
Confidence 88888887653221 11111 111111 0000000000 00000000 000111111 011233466899999
Q ss_pred HHHHHHhcC-chhHHHHHHHHHHHhhc
Q 009568 375 PLVNLLQNA-EFDIKKEAAWAISNATS 400 (532)
Q Consensus 375 ~L~~ll~~~-~~~v~~~a~~aL~nl~~ 400 (532)
.|+++.... +..+...|...|+.+..
T Consensus 338 ~L~~li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 338 ALVELIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 999999987 88899999988887653
No 99
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=6.4e-05 Score=81.63 Aligned_cols=379 Identities=13% Similarity=0.128 Sum_probs=204.5
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHhcCCC-CCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc-CChhhH
Q 009568 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIER-SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS-GTSENT 153 (532)
Q Consensus 76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~-~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~-~~~~~~ 153 (532)
...+...+.+++|..|..++.-|-.+...-. .+.+. .....+...|..+|.+.+ .-.|..|.+.++-+-. ++...+
T Consensus 820 ~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~-l~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k 897 (1702)
T KOG0915|consen 820 LKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVV-LMLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLK 897 (1702)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhh-hccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhH
Confidence 4556667779999998887655555444321 22222 223346688999999887 7888888877766543 334444
Q ss_pred HHHHhCCChHHHHHhhCC---------CCHHHHH-------------HHHHHHHHhhCCCchhHHHHHhcCChHHHHHHh
Q 009568 154 KVVIDHGAVPIFVKLLAS---------PSDDVRE-------------QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL 211 (532)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~---------~~~~v~~-------------~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll 211 (532)
+.++ ..|+.-|.. ++.++.+ ..-.-|+|+|++-.. -+.+-.++++-
T Consensus 898 ~~LV-----~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~q-------PdLVYKFM~LA 965 (1702)
T KOG0915|consen 898 KSLV-----DSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQ-------PDLVYKFMQLA 965 (1702)
T ss_pred HHHH-----HHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCC-------hHHHHHHHHHh
Confidence 4443 444544422 1111111 111224444432111 01123334443
Q ss_pred hhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHh-ccCChhHHHHHHHhCchHH
Q 009568 212 NERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYL-SDGTNDKIQAVIEAGVCPR 290 (532)
Q Consensus 212 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l-~~~~~~~~~~~~~~~~l~~ 290 (532)
+.+..-.-+.-|+.-+..++.............++|.|.+.=.+++..|+... .-|++. ...+...+..... .++..
T Consensus 966 nh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM-~sIW~~Li~D~k~~vd~y~n-eIl~e 1043 (1702)
T KOG0915|consen 966 NHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAM-TSIWNALITDSKKVVDEYLN-EILDE 1043 (1702)
T ss_pred hhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHH-HHHHHHhccChHHHHHHHHH-HHHHH
Confidence 22222222333444444444433222223345566666666667777776544 445554 4333444443333 78888
Q ss_pred HHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhc--CchHHHHHHhcCCCchhHHHH---HHHHHHHHhcC-----C
Q 009568 291 LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITY--GALPYLLGLLTHSHKKSIKKE---ACWTISNITAG-----N 360 (532)
Q Consensus 291 L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~--~~l~~L~~lL~~~~~~~v~~~---a~~~L~nl~~~-----~ 360 (532)
|+.-|.+..|.+|+.+|.+|..|..+.+.. .+.+. .+...+.+.+.+- .+.||+. ++.+|+.++.. +
T Consensus 1044 LL~~lt~kewRVReasclAL~dLl~g~~~~--~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~ 1120 (1702)
T KOG0915|consen 1044 LLVNLTSKEWRVREASCLALADLLQGRPFD--QVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTN 1120 (1702)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 999999999999999999999999987622 12221 3444455555554 5567765 45667766641 1
Q ss_pred HHHHHHHHHcCCHHHHHHH-HhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHH-HHHH
Q 009568 361 RDQIQAVIDAGLVGPLVNL-LQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVC-LEGL 438 (532)
Q Consensus 361 ~~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~a-l~~L 438 (532)
+..-+.+++ .++|.|+.- +.++-.++|+-++.++..++........+++- .+++.|++.++.-.+.+.... +.+
T Consensus 1121 ~~~~~~~l~-~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnYls~r~- 1196 (1702)
T KOG0915|consen 1121 GAKGKEALD-IILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNYLSLRL- 1196 (1702)
T ss_pred cccHHHHHH-HHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHHHHHhh-
Confidence 111222222 255655541 12556799999999999999876555444433 378888888877666554332 222
Q ss_pred HHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 009568 439 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEK 488 (532)
Q Consensus 439 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~ 488 (532)
.++=... -.+.........-..+.|+.+.++-|..+-..
T Consensus 1197 ~~~e~ea-----------lDt~R~s~aksspmmeTi~~ci~~iD~~vLee 1235 (1702)
T KOG0915|consen 1197 INIETEA-----------LDTLRASAAKSSPMMETINKCINYIDISVLEE 1235 (1702)
T ss_pred hhhHHHH-----------HHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHH
Confidence 2221100 11112233333444566777766666555443
No 100
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.22 E-value=2.6e-06 Score=54.18 Aligned_cols=41 Identities=44% Similarity=0.890 Sum_probs=38.2
Q ss_pred ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 009568 149 TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG 189 (532)
Q Consensus 149 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~ 189 (532)
+++++..+++.|++|.|+++|.++++.+++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999973
No 101
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.20 E-value=0.00029 Score=68.87 Aligned_cols=215 Identities=26% Similarity=0.341 Sum_probs=155.0
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009568 117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD 196 (532)
Q Consensus 117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 196 (532)
..++.+.+++.+++ ..++..|++.++.+.. .-+++.+..++.+.++.+|..++.+|+.+- .+.
T Consensus 43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~~--- 105 (335)
T COG1413 43 EAADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--DPE--- 105 (335)
T ss_pred hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Chh---
Confidence 36888999999987 8999999999777664 235799999999999999999999999872 121
Q ss_pred HHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCH------------HHHHHH
Q 009568 197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE------------EVLTDA 264 (532)
Q Consensus 197 ~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~------------~v~~~a 264 (532)
.++.++.++..+.+..++..+.++|..+-.. ..+..++..+.+... .++..+
T Consensus 106 ------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 106 ------AVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 4788999995578999999999999987764 335666677766542 234444
Q ss_pred HHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchh
Q 009568 265 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKS 344 (532)
Q Consensus 265 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~ 344 (532)
...++.+- +...++.+...+.+....++..+..+|+.+.... ..+.+.+...+.+. +..
T Consensus 170 ~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~ 228 (335)
T COG1413 170 AEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE 228 (335)
T ss_pred HHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence 44443332 1245677777888877788888888888877654 24456777777777 888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHH
Q 009568 345 IKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAIS 396 (532)
Q Consensus 345 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 396 (532)
+|..++..++.+-... .++.++..+...+..++..+..++.
T Consensus 229 vr~~~~~~l~~~~~~~-----------~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 229 VRKAALLALGEIGDEE-----------AVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred HHHHHHHHhcccCcch-----------hHHHHHHHHhccchHHHHHHHHHhc
Confidence 8888888888775321 3456666777776666665555554
No 102
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.19 E-value=2.9e-05 Score=61.43 Aligned_cols=153 Identities=8% Similarity=0.025 Sum_probs=120.8
Q ss_pred chHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHH
Q 009568 329 ALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIK 408 (532)
Q Consensus 329 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 408 (532)
.+..|+.-+....+.+.+.....-|.|++.. |.....+.+.+++..+++.+...+..+...+..+|+|+|. ++...+
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~~ 93 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNAK 93 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHHH
Confidence 3445555555554788888888888888754 6667788899999999999999999999999999999998 567788
Q ss_pred HHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 009568 409 YLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEK 488 (532)
Q Consensus 409 ~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~ 488 (532)
.+.+.+.++.++..++++...++..++.++..+...+.. +...+-....++.++....+.+-+.+..
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt-------------~r~ell~p~Vv~~v~r~~~s~s~~~rnL 160 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT-------------ERDELLSPAVVRTVQRWRESKSHDERNL 160 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc-------------hhHHhccHHHHHHHHHHHHHhhHHHHHH
Confidence 889999999999999999999998888877766443222 3455555666778888777777778888
Q ss_pred HHHHHHHhC
Q 009568 489 AVKILETYW 497 (532)
Q Consensus 489 a~~il~~~~ 497 (532)
|...++++-
T Consensus 161 a~~fl~~~~ 169 (173)
T KOG4646|consen 161 ASAFLDKHV 169 (173)
T ss_pred HHHHHHhhc
Confidence 888887764
No 103
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.17 E-value=0.00012 Score=77.93 Aligned_cols=267 Identities=15% Similarity=0.126 Sum_probs=175.0
Q ss_pred hHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC----ChhHH
Q 009568 204 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG----TNDKI 279 (532)
Q Consensus 204 l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~----~~~~~ 279 (532)
+..+...+..-.....+..|+..|..|+... ........++|.++.++.+++..|+..|+.+|..+... .+..
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i--~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d- 500 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYI--DDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD- 500 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhc--chHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc-
Confidence 3444444433335667888888888888763 34455678999999999999999999999999877532 2222
Q ss_pred HHHHHhCchHHHHHhhCC-CCccchhhHHHHHHHhhcCCc---chhHH-------------------------HhhcCch
Q 009568 280 QAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDD---FQTQC-------------------------IITYGAL 330 (532)
Q Consensus 280 ~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~---~~~~~-------------------------~~~~~~l 330 (532)
..++..=++|.|-.++.+ ....++..-+.+|+.|+...- ..++. -+..++-
T Consensus 501 aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~ 580 (1431)
T KOG1240|consen 501 ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVE 580 (1431)
T ss_pred chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHH
Confidence 224444678888888877 455566666666666652100 00111 0111334
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHH
Q 009568 331 PYLLGLLTHSHKKSIKKEACWTISNITA--GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIK 408 (532)
Q Consensus 331 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 408 (532)
..+..+|.++ ++.||+.....|+-||. |... -+.-+++.|+.+|.+.|+.+|..-...|.-++..-...-
T Consensus 581 ~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFGk~k-----sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs-- 652 (1431)
T KOG1240|consen 581 QMVSSLLSDS-PPIVKRALLESIIPLCVFFGKEK-----SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS-- 652 (1431)
T ss_pred HHHHHHHcCC-chHHHHHHHHHHHHHHHHhhhcc-----cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeee--
Confidence 5556667766 67788777777777764 2110 112368899999999999888776666665544222111
Q ss_pred HHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 009568 409 YLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEK 488 (532)
Q Consensus 409 ~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~ 488 (532)
+++.+++.|.+-|.+..+-|+..||.+|..+++.+--.+. +.. ..++.+--|.-|+|.=|+..
T Consensus 653 --~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~----------~v~-----~i~~~v~PlL~hPN~WIR~~ 715 (1431)
T KOG1240|consen 653 --VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP----------AVK-----DILQDVLPLLCHPNLWIRRA 715 (1431)
T ss_pred --HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH----------HHH-----HHHHhhhhheeCchHHHHHH
Confidence 2345788999999999999999999999999987643221 121 12345566788999999999
Q ss_pred HHHHHHHhCC
Q 009568 489 AVKILETYWL 498 (532)
Q Consensus 489 a~~il~~~~~ 498 (532)
+..+|-....
T Consensus 716 ~~~iI~~~~~ 725 (1431)
T KOG1240|consen 716 VLGIIAAIAR 725 (1431)
T ss_pred HHHHHHHHHh
Confidence 8887765543
No 104
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.16 E-value=0.00047 Score=69.42 Aligned_cols=253 Identities=15% Similarity=0.125 Sum_probs=166.6
Q ss_pred chhHhhhCCcHHHHHHhh---------cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCC-----CH
Q 009568 109 PIEEVIQSGVVPRFVEFL---------MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP-----SD 174 (532)
Q Consensus 109 ~~~~~i~~g~i~~Lv~lL---------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-----~~ 174 (532)
..+.+.....+..|.++- ....++.+..+|++||+|+...++..+..+++.|..+.++..|+.. +.
T Consensus 14 ~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~ 93 (446)
T PF10165_consen 14 GLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPS 93 (446)
T ss_pred cchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCCh
Confidence 444455555566666654 2233489999999999999999999999999999999999999875 67
Q ss_pred HHHHHHHHHHHHhhCCCchhHHHHHh-cCChHHHHHHhhhh----------------hhhHHHHHHHHHhhhccCCCCCC
Q 009568 175 DVREQAVWALGNVAGDSPRCRDLVLS-QGALIPLLAQLNER----------------AKLSMLRNATWTLSNFCRGKPQP 237 (532)
Q Consensus 175 ~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~~ll~~~----------------~~~~~~~~a~~~L~~L~~~~~~~ 237 (532)
++.-...++|--++...+..+..+.+ .+++..++..+... .+......++.++.|+....+..
T Consensus 94 d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~ 173 (446)
T PF10165_consen 94 DVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKS 173 (446)
T ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcc
Confidence 88888888888888777777766554 46677776665311 24456777888888988776433
Q ss_pred Cccccc----chHHHHHHhh---cC--CCHHHHHHHHHHHHHhccCChhHH-----------HHHHHhCchHHHHHhhCC
Q 009568 238 PFDQVR----PALPALAQLV---HS--NDEEVLTDACWALSYLSDGTNDKI-----------QAVIEAGVCPRLVELLGH 297 (532)
Q Consensus 238 ~~~~~~----~~l~~L~~lL---~~--~d~~v~~~a~~~L~~l~~~~~~~~-----------~~~~~~~~l~~L~~lL~~ 297 (532)
...... .++..+..++ .. +......+++.+|.++-....... ........+..|+.+|..
T Consensus 174 ~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~ 253 (446)
T PF10165_consen 174 VPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDK 253 (446)
T ss_pred cchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHH
Confidence 322333 3444444442 11 134567777777877632111110 001122355666666532
Q ss_pred -----C---CccchhhHHHHHHHhhcCCcchhHHHhh----------------cCchHHHHHHhcCCCchhHHHHHHHHH
Q 009568 298 -----P---SPSVLIPALRTVGNIVTGDDFQTQCIIT----------------YGALPYLLGLLTHSHKKSIKKEACWTI 353 (532)
Q Consensus 298 -----~---~~~v~~~al~~L~nl~~~~~~~~~~~~~----------------~~~l~~L~~lL~~~~~~~v~~~a~~~L 353 (532)
. -.....+.+.+|.+++......++.+-. ..+-..|++++.+. .+.++..+...+
T Consensus 254 ~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vaell 332 (446)
T PF10165_consen 254 RLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAELL 332 (446)
T ss_pred HHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHHHH
Confidence 1 1357888999999999876544444321 24567788888888 688999888888
Q ss_pred HHHhcCCHH
Q 009568 354 SNITAGNRD 362 (532)
Q Consensus 354 ~nl~~~~~~ 362 (532)
-.+|..+..
T Consensus 333 f~Lc~~d~~ 341 (446)
T PF10165_consen 333 FVLCKEDAS 341 (446)
T ss_pred HHHHhhhHH
Confidence 888865544
No 105
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.0018 Score=65.37 Aligned_cols=338 Identities=16% Similarity=0.143 Sum_probs=193.5
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh
Q 009568 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS 200 (532)
Q Consensus 121 ~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 200 (532)
.-+++|+++..++ +......+.-+...+.+..+.+ +..+..=|.+.++.....|+.+++|+-+. +++..+
T Consensus 78 EaV~LLss~kysE-KqIGYl~is~L~n~n~dl~klv-----in~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~-- 147 (938)
T KOG1077|consen 78 EAVNLLSSNKYSE-KQIGYLFISLLLNENSDLMKLV-----INSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAF-- 147 (938)
T ss_pred HHHHHhhcCCccH-HHHhHHHHHHHHhcchHHHHHH-----HHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHh--
Confidence 3467777766433 2223333333444344443333 35666667778888899999999999432 223332
Q ss_pred cCChHHHHHHhhh-hhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHH
Q 009568 201 QGALIPLLAQLNE-RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKI 279 (532)
Q Consensus 201 ~~~l~~L~~ll~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~ 279 (532)
-.-+-++|.. +...-++..++.+|..|.+.. ++.....+-...++.+|.+.+-.+...+...+-.++...++..
T Consensus 148 ---~~DI~KlLvS~~~~~~vkqkaALclL~L~r~s--pDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~y 222 (938)
T KOG1077|consen 148 ---ADDIPKLLVSGSSMDYVKQKAALCLLRLFRKS--PDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESY 222 (938)
T ss_pred ---hhhhHHHHhCCcchHHHHHHHHHHHHHHHhcC--ccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHH
Confidence 1222344533 335567788888888888874 3444445677889999998888888888888888886655443
Q ss_pred HHHHHhCchHHHHHhhC-------------CCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCC-c---
Q 009568 280 QAVIEAGVCPRLVELLG-------------HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH-K--- 342 (532)
Q Consensus 280 ~~~~~~~~l~~L~~lL~-------------~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~--- 342 (532)
...+. ..+..|..+.. -+.|-+....+++|.++-...+..+..-+ ..+++.++...+... .
T Consensus 223 k~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l-~evl~~iLnk~~~~~~~k~v 300 (938)
T KOG1077|consen 223 KTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARL-NEVLERILNKAQEPPKSKKV 300 (938)
T ss_pred hhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHH-HHHHHHHHhccccCccccch
Confidence 32221 11222222221 13455677788888877443332222111 123334443333110 1
Q ss_pred --hhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHH
Q 009568 343 --KSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLC 420 (532)
Q Consensus 343 --~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~ 420 (532)
...+....+-.-+++.+-...-..+.+ .+..|.+++.+.+..+|--|...++.+++.... ...+.. -.+.++
T Consensus 301 q~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s--~davK~--h~d~Ii 374 (938)
T KOG1077|consen 301 QHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFS--IDAVKK--HQDTII 374 (938)
T ss_pred HhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccch--HHHHHH--HHHHHH
Confidence 122333344444554421111112222 567889999999999999999999999986432 222222 167788
Q ss_pred hhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009568 421 DLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW 497 (532)
Q Consensus 421 ~lL~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~ 497 (532)
..|+ ..|..++..+++.|+.++..+.. ..|. .+.+..|+....+--+++.-++.-+-|+|-
T Consensus 375 ~sLkterDvSirrravDLLY~mcD~~Na---------------k~IV-~elLqYL~tAd~sireeivlKvAILaEKyA 436 (938)
T KOG1077|consen 375 NSLKTERDVSIRRRAVDLLYAMCDVSNA---------------KQIV-AELLQYLETADYSIREEIVLKVAILAEKYA 436 (938)
T ss_pred HHhccccchHHHHHHHHHHHHHhchhhH---------------HHHH-HHHHHHHhhcchHHHHHHHHHHHHHHHHhc
Confidence 8888 78999999999999999865432 2222 233445554444444555555554555553
No 106
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.16 E-value=4.4e-06 Score=53.11 Aligned_cols=41 Identities=37% Similarity=0.713 Sum_probs=37.9
Q ss_pred CHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009568 360 NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 400 (532)
Q Consensus 360 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 400 (532)
++++++.+++.|++|.|+.+|.+.+++++++|+|+|+|++.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788899999999999999999999999999999999973
No 107
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=0.0012 Score=72.12 Aligned_cols=318 Identities=16% Similarity=0.170 Sum_probs=182.3
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch--h
Q 009568 117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR--C 194 (532)
Q Consensus 117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~--~ 194 (532)
.+||.|.+.=-+++ +.+|..-..+...+..++....+.... .++.-|+.-|.+....+|+.++.+|..+....+. .
T Consensus 998 kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~ 1075 (1702)
T KOG0915|consen 998 KLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTSKEWRVREASCLALADLLQGRPFDQV 1075 (1702)
T ss_pred HhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHH
Confidence 37888888766777 888888877777777755555554443 5667777778888899999999999999865543 2
Q ss_pred HHHHHhcCChHHHHHHhhhhhhhHHHHH---HHHHhhhccCCC-C----CCCcccccchHHHHHH-hhcCCCHHHHHHHH
Q 009568 195 RDLVLSQGALIPLLAQLNERAKLSMLRN---ATWTLSNFCRGK-P----QPPFDQVRPALPALAQ-LVHSNDEEVLTDAC 265 (532)
Q Consensus 195 ~~~~~~~~~l~~L~~ll~~~~~~~~~~~---a~~~L~~L~~~~-~----~~~~~~~~~~l~~L~~-lL~~~d~~v~~~a~ 265 (532)
.+.+.+ ....+++.+ ++-.+.++.. ++.+|+.+|-.. . .........++|.|.. -+-+.-++++..++
T Consensus 1076 ~e~lpe--lw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si 1152 (1702)
T KOG0915|consen 1076 KEKLPE--LWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSI 1152 (1702)
T ss_pred HHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHH
Confidence 233221 344444444 4555566555 455666665433 1 1122233444554441 11255688999999
Q ss_pred HHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchh-hHHHH----------HH-HhhcCCcc--hhHHH-------
Q 009568 266 WALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI-PALRT----------VG-NIVTGDDF--QTQCI------- 324 (532)
Q Consensus 266 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~-~al~~----------L~-nl~~~~~~--~~~~~------- 324 (532)
.++..++........... ..++|.|+...+.-++.+.. .++++ +. +.+.+++. .....
T Consensus 1153 ~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~ 1231 (1702)
T KOG0915|consen 1153 GTLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDIS 1231 (1702)
T ss_pred HHHHHHHHhchhhhcchh-hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHH
Confidence 999999977665444322 24566666666554444322 22222 11 11222220 00000
Q ss_pred hhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCH
Q 009568 325 ITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH 404 (532)
Q Consensus 325 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~ 404 (532)
+-..++|.+.++++.+..-..|..++..++-++........+... .++..++..+.+.+..+++.-+.|.+.++....+
T Consensus 1232 vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sg-Kll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~ 1310 (1702)
T KOG0915|consen 1232 VLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSG-KLLRALFPGAKDRNESVRKAFASAMGYLAKFSSP 1310 (1702)
T ss_pred HHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchh-HHHHHHhhccccccHHHHHHHHHHHHHHHhcCCh
Confidence 112456777777766544455666666666665421111111111 1355666666777899999999999999998888
Q ss_pred HHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 009568 405 EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGE 446 (532)
Q Consensus 405 ~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 446 (532)
++...+++ .+...+-.+++.....++..+.+|.....
T Consensus 1311 dq~qKLie-----~~l~~~l~k~es~~siscatis~Ian~s~ 1347 (1702)
T KOG0915|consen 1311 DQMQKLIE-----TLLADLLGKDESLKSISCATISNIANYSQ 1347 (1702)
T ss_pred HHHHHHHH-----HHHHHHhccCCCccchhHHHHHHHHHhhH
Confidence 78777543 33332222222222445555555544433
No 108
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.14 E-value=0.004 Score=62.57 Aligned_cols=347 Identities=16% Similarity=0.137 Sum_probs=199.5
Q ss_pred HHHHhhhcCCCh---HHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh-
Q 009568 77 PAMVAGVWSDDS---SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN- 152 (532)
Q Consensus 77 ~~lv~~L~s~~~---~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~- 152 (532)
|.++..|.+.+. ......+..|..+... +.+-..+...++..+...+....+.+....++.+|.++.....+.
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~---~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~ 78 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTS---PQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK 78 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCC---hhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc
Confidence 556666665544 4455677888887763 332222222455555555544434677777888888876533222
Q ss_pred ----HHHHHhCCChHHHHHhhCC-----C--CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhh---------
Q 009568 153 ----TKVVIDHGAVPIFVKLLAS-----P--SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN--------- 212 (532)
Q Consensus 153 ----~~~i~~~g~i~~L~~lL~~-----~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~--------- 212 (532)
.....+..+++.+...... . ++.+...+..++..++..-+..+..- .+..+..+..
T Consensus 79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~----~~~~~~~lf~~~~~~~~~~ 154 (415)
T PF12460_consen 79 QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE----ILDELYSLFLSPKSFSPFQ 154 (415)
T ss_pred ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH----HHHHHHHHHccccccCCCC
Confidence 2333344477777776532 1 25666667777776665443322221 1333333331
Q ss_pred --hh----hhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc-CCCHHHHHHHHHHHHHhccCC--hhHHHHHH
Q 009568 213 --ER----AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-SNDEEVLTDACWALSYLSDGT--NDKIQAVI 283 (532)
Q Consensus 213 --~~----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~~--~~~~~~~~ 283 (532)
.+ .......-...+++.+-.. ........++..++.+.. ..++..+..++.+++-++... ++...
T Consensus 155 ~~~~~~~~~~~~~~~l~~~il~~l~~~---~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~--- 228 (415)
T PF12460_consen 155 PSSSTISEQQSRLVILFSAILCSLRKD---VSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD--- 228 (415)
T ss_pred ccccccccccccHHHHHHHHHHcCCcc---cCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH---
Confidence 00 1112222233333333333 222233446777776654 446788888888888887552 22122
Q ss_pred HhCchHHHHHhh-CCCCccchhhHHHHHHHhh----cCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568 284 EAGVCPRLVELL-GHPSPSVLIPALRTVGNIV----TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (532)
Q Consensus 284 ~~~~l~~L~~lL-~~~~~~v~~~al~~L~nl~----~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 358 (532)
.++..+...+ .......+..++.++..++ ...+.... ..+..|+.+|.+ +.+...|+..++-+..
T Consensus 229 --~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~---~~~g~~aA~~f~il~~ 298 (415)
T PF12460_consen 229 --EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS---PELGQQAAKAFGILLS 298 (415)
T ss_pred --HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC---hhhHHHHHHHHhhHhc
Confidence 3344444444 3334444555555544443 22222222 345678888875 5678888888888876
Q ss_pred CCHH--------HHHHHHHcC----CHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCC
Q 009568 359 GNRD--------QIQAVIDAG----LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP 426 (532)
Q Consensus 359 ~~~~--------~~~~l~~~~----~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~ 426 (532)
..++ .++.+.+.. ++|.|++.....+...+.....||.++..+.+...... --..++|.|++.|+.+
T Consensus 299 d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~-~l~~LlPLLlqsL~~~ 377 (415)
T PF12460_consen 299 DSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLP-ELPTLLPLLLQSLSLP 377 (415)
T ss_pred CcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHHHHhCCC
Confidence 5332 233333332 57788887777777789999999999998765443222 1134899999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhh
Q 009568 427 DPRIVTVCLEGLENILKVGEA 447 (532)
Q Consensus 427 d~~v~~~al~~L~~l~~~~~~ 447 (532)
|++++..++++|..++...+.
T Consensus 378 ~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 378 DADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred CHHHHHHHHHHHHHHHHcCHH
Confidence 999999999999999986543
No 109
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=5.7e-05 Score=75.28 Aligned_cols=250 Identities=16% Similarity=0.142 Sum_probs=159.3
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHH---HHhhhccCCC---CCC
Q 009568 164 IFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNAT---WTLSNFCRGK---PQP 237 (532)
Q Consensus 164 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~---~~L~~L~~~~---~~~ 237 (532)
.|..+..+.+..++.+|+.+|..+.. .-..-.. .....+.++ .+.+..++..|+ |.++|.+-.+ ...
T Consensus 202 ~l~~~~~~~D~~Vrt~A~eglL~L~e-g~kL~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 202 GLIYLEHDQDFRVRTHAVEGLLALSE-GFKLSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhcc-cccccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 36666677777888888887777754 2222111 345566677 677788888774 5555655322 112
Q ss_pred CcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcC-
Q 009568 238 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG- 316 (532)
Q Consensus 238 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~- 316 (532)
.......++..+...+.+-...|+..|..+|+.+..-+.+.+...++..++..+-..-... -+-..+..=|..++|
T Consensus 275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ah---krpk~l~s~GewSsGk 351 (823)
T KOG2259|consen 275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAH---KRPKALYSSGEWSSGK 351 (823)
T ss_pred hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcc---cchHHHHhcCCcccCc
Confidence 2233456777788888888889999999999988877777777777766555332211100 011111111111111
Q ss_pred ----------CcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchh
Q 009568 317 ----------DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFD 386 (532)
Q Consensus 317 ----------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 386 (532)
.+.....++.+|+--.++.-|.+. -.+||+.|...++.++...|..... .+..|++++.+....
T Consensus 352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~ 425 (823)
T KOG2259|consen 352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEV 425 (823)
T ss_pred cccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHH
Confidence 223344577888888888888877 7899999999999999876664433 456889999988889
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHH
Q 009568 387 IKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE 436 (532)
Q Consensus 387 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~ 436 (532)
||..|..+|..++.... ++...++.++..|.+..++++....+
T Consensus 426 VRL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~l~e 468 (823)
T KOG2259|consen 426 VRLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREALRE 468 (823)
T ss_pred HHHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999877531 12233555555555555555544333
No 110
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.13 E-value=2e-05 Score=62.37 Aligned_cols=115 Identities=15% Similarity=0.102 Sum_probs=99.6
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009568 117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD 196 (532)
Q Consensus 117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 196 (532)
+.+..||.-.....+.+.+.....-|.|++. +|-+-..+.+..++..++.-|..++..+.+.++..|+|+|.+.. ...
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHH
Confidence 4566777666655558999999999999999 78888899999999999999999999999999999999998765 567
Q ss_pred HHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568 197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (532)
Q Consensus 197 ~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~ 234 (532)
.+.+.++++.++..+ .++...+...++.++..|+.+.
T Consensus 94 ~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 94 FIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE 130 (173)
T ss_pred HHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence 888999999999998 7777888889999999999875
No 111
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=9.9e-05 Score=74.52 Aligned_cols=265 Identities=17% Similarity=0.177 Sum_probs=163.1
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009568 117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD 196 (532)
Q Consensus 117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 196 (532)
++...|.+.|++.+++.++.-++-.|+-...++... .+...|-..|...+...-+.|..+++-+-..+.. .+
T Consensus 413 ~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~-------eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~-~e 484 (929)
T KOG2062|consen 413 GITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE-------EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN-QE 484 (929)
T ss_pred cHHHHHHHHHHhccchhhhhhhhhhccchhcccccH-------HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc-HH
Confidence 356677777777666778887777766665544322 1235556666665565666666666655433221 11
Q ss_pred HHHhcCChHHHHHHhhhhhhhHHHHHHHH--HhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 009568 197 LVLSQGALIPLLAQLNERAKLSMLRNATW--TLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG 274 (532)
Q Consensus 197 ~~~~~~~l~~L~~ll~~~~~~~~~~~a~~--~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~ 274 (532)
++.-++..-.......+.+-..- +|....+. ...=+.+-.++.+.|+-++.....++.---.+
T Consensus 485 ------aiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrq---------e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~G 549 (929)
T KOG2062|consen 485 ------AIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQ---------EDADPLIKELLRDKDPILRYGGMYTLALAYVG 549 (929)
T ss_pred ------HHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhh---------hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhc
Confidence 23334444433444555554332 23333332 23445677788888888888877766432222
Q ss_pred ChhHHHHHHHhCchHHHHHh-hCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHH
Q 009568 275 TNDKIQAVIEAGVCPRLVEL-LGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI 353 (532)
Q Consensus 275 ~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 353 (532)
.. ..+++..|++. .++.+.+|+..|+-+||-++..+++ .++..+.+|..++++.||..++.+|
T Consensus 550 Tg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~AL 613 (929)
T KOG2062|consen 550 TG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMAL 613 (929)
T ss_pred cC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHHH
Confidence 11 12567778887 5778999999999999999887663 3567888888887999999999999
Q ss_pred HHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHH
Q 009568 354 SNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429 (532)
Q Consensus 354 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~ 429 (532)
+-.|+|+...- .+..|-.++.+...-||+-|+.++.-+....++..+.. -.++.+.+...+.+++.+
T Consensus 614 GIaCAGtG~~e-------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pk--v~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 614 GIACAGTGLKE-------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPK--VNGFRKQLEKVINDKHED 680 (929)
T ss_pred hhhhcCCCcHH-------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCch--HHHHHHHHHHHhhhhhhH
Confidence 99998643311 22334444555667799999999988876544333222 123444555555544443
No 112
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.11 E-value=8e-05 Score=79.13 Aligned_cols=268 Identities=17% Similarity=0.161 Sum_probs=173.2
Q ss_pred HHHHHhhhcC-CChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC---Chh
Q 009568 76 LPAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG---TSE 151 (532)
Q Consensus 76 l~~lv~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~---~~~ 151 (532)
++.+..++++ ...+.+..|+..|..+...-. ++..-..++|.++.++.++. .++|..|+..|+.+... -+.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~----de~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYID----DEVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcc----hHHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence 3444444443 335677888888888865421 12222348999999999998 99999999999887652 122
Q ss_pred hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHH----------------------------HhcC
Q 009568 152 NTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLV----------------------------LSQG 202 (532)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~----------------------------~~~~ 202 (532)
.-..+.-.-++|.|-.++.+ ....+|..-+..|+.+|.....+.... +-.
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~- 577 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH- 577 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH-
Confidence 22233344567888888877 445566655666666653211111000 001
Q ss_pred ChHHHH-HHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHH
Q 009568 203 ALIPLL-AQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQA 281 (532)
Q Consensus 203 ~l~~L~-~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~ 281 (532)
.+...+ .++ .++++-+++..+..+.-||.-- .......-+++.|..+|++.|+.++..-...|..++..-. ..
T Consensus 578 ~V~~~v~sLl-sd~~~~Vkr~Lle~i~~LC~FF--Gk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG---~r 651 (1431)
T KOG1240|consen 578 TVEQMVSSLL-SDSPPIVKRALLESIIPLCVFF--GKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG---WR 651 (1431)
T ss_pred HHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHh--hhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe---ee
Confidence 122222 233 4445667777777777666432 1111224578899999999999999888877776653321 11
Q ss_pred HHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568 282 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (532)
Q Consensus 282 ~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 358 (532)
-++..++|.|.+-|.++++.|...|++++..|+...--....+. .+++.+..+|-++ +.-+|..++.+|..++.
T Consensus 652 s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 652 SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence 23457889999999999999999999999999975442332333 4677788888999 99999999999988775
No 113
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.11 E-value=0.00029 Score=64.29 Aligned_cols=230 Identities=17% Similarity=0.196 Sum_probs=153.3
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-CCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHh
Q 009568 124 EFLMREDYPQLQFEAAWALTNIASGTSENTKVVID-HGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLS 200 (532)
Q Consensus 124 ~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 200 (532)
++++.-+ +-.+.-|+.|+.++.. .++.+..+.. ..+-..++.+++. ....++-..+.+++-++.. +.+.+.+-.
T Consensus 156 kl~Q~i~-~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K 232 (432)
T COG5231 156 KLSQLID-FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDK 232 (432)
T ss_pred HHHHHHH-HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHH
Confidence 3444444 5678889999999998 6777776654 3455677777766 5678888888888888644 334322221
Q ss_pred -cCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCC--cccc-cchHHHHHHhhc--CCCHHHHHHHHHHHHHhccC
Q 009568 201 -QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP--FDQV-RPALPALAQLVH--SNDEEVLTDACWALSYLSDG 274 (532)
Q Consensus 201 -~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~--~~~~-~~~l~~L~~lL~--~~d~~v~~~a~~~L~~l~~~ 274 (532)
...+.-+++++.......+.+-++..+.|++...|... .... ..+.+..--++. -.|++++.+.-..=..+..+
T Consensus 233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~ 312 (432)
T COG5231 233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQN 312 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence 23466677777667788999999999999998433221 1112 223333333332 23666554433322222111
Q ss_pred Ch------------------------------hHHHHHHHh--CchHHHHHhhCCCCcc-chhhHHHHHHHhhcCCcchh
Q 009568 275 TN------------------------------DKIQAVIEA--GVCPRLVELLGHPSPS-VLIPALRTVGNIVTGDDFQT 321 (532)
Q Consensus 275 ~~------------------------------~~~~~~~~~--~~l~~L~~lL~~~~~~-v~~~al~~L~nl~~~~~~~~ 321 (532)
.. .+...+.+. .++..|.++++..++. ....||.-++.++...|+..
T Consensus 313 ~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~ 392 (432)
T COG5231 313 TKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEIN 392 (432)
T ss_pred hhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHH
Confidence 00 111222221 4688889999887766 66778999999999999888
Q ss_pred HHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 009568 322 QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 357 (532)
Q Consensus 322 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 357 (532)
..+.+.|+=..++.+++|+ +++|+.+|..++-.+.
T Consensus 393 ~vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i 427 (432)
T COG5231 393 AVLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHH
Confidence 8888999999999999999 9999999999887664
No 114
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.09 E-value=2.8e-05 Score=71.45 Aligned_cols=187 Identities=17% Similarity=0.240 Sum_probs=119.5
Q ss_pred hCCCCccchhhHHHHHHHhhcCC--cchhHHHhhc--CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 009568 295 LGHPSPSVLIPALRTVGNIVTGD--DFQTQCIITY--GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDA 370 (532)
Q Consensus 295 L~~~~~~v~~~al~~L~nl~~~~--~~~~~~~~~~--~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 370 (532)
-.+.+|..+..++..|..++.+. ......+... .++..+...+.+. ...+.+.||.++..++......+...++.
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 36678999999999999998877 2222223221 5667777788777 78899999999999987433335555443
Q ss_pred CCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC-HHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 009568 371 GLVGPLVNLLQNAEFDIKKEAAWAISNATSGGT-HEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEK 449 (532)
Q Consensus 371 ~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~-~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~ 449 (532)
++|.|+..+.++...++..|..+|..++...+ .... .+..+.....++++.++..++..+..++.......
T Consensus 95 -~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-------~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~ 166 (228)
T PF12348_consen 95 -LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-------LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDS 166 (228)
T ss_dssp -HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-------HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----
T ss_pred -HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-------HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchH
Confidence 78999999999888999999999999998755 1111 15566778889999999999999999988765111
Q ss_pred hccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009568 450 NMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLE 499 (532)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 499 (532)
. ...... .+ ....+.+..+..+.+++|++.|...+..|+..
T Consensus 167 ~------~l~~~~-~~--~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 167 S------VLQKSA-FL--KQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp G------GG--HH-HH--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred h------hhcccc-hH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 0 011000 01 22357788889999999999999988887653
No 115
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.09 E-value=0.0043 Score=64.87 Aligned_cols=141 Identities=18% Similarity=0.160 Sum_probs=111.2
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 154 (532)
.++.+++.+.+.|.+++...-..|...... .| ...+. .++.+.+=+.+++ +.+|..|++.++.+-. ++...
T Consensus 56 Lf~dViK~~~trd~ElKrL~ylYl~~yak~--~P-~~~lL---avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~ 126 (757)
T COG5096 56 LFPDVIKNVATRDVELKRLLYLYLERYAKL--KP-ELALL---AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG 126 (757)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhcc--CH-HHHHH---HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH
Confidence 568888888888898888888888888775 23 22222 5788888889998 9999999999988765 33322
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (532)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~ 233 (532)
.+++++.+++.++++.||..|+.++.++-.-++ +.+.+.|.+..+..++ .+.++.+.++|+.+|..+...
T Consensus 127 -----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 127 -----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred -----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence 356899999999999999999999999965443 3556667777666666 889999999999999988765
No 116
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.08 E-value=6.5e-06 Score=56.36 Aligned_cols=55 Identities=25% Similarity=0.594 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009568 343 KSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA 398 (532)
Q Consensus 343 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 398 (532)
+.+|..|+|+|++++...++....... .+++.|+.+|.++++.||..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999998888887777554 4899999999999889999999999875
No 117
>PF05536 Neurochondrin: Neurochondrin
Probab=98.06 E-value=0.00043 Score=71.24 Aligned_cols=235 Identities=18% Similarity=0.164 Sum_probs=162.8
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch---hHHHHHhcCChHHHHHHhhhh------hhhHHHHHHHHHhhhccC
Q 009568 162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPR---CRDLVLSQGALIPLLAQLNER------AKLSMLRNATWTLSNFCR 232 (532)
Q Consensus 162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~---~~~~~~~~~~l~~L~~ll~~~------~~~~~~~~a~~~L~~L~~ 232 (532)
+...+.+|+..+.+-+-.++..+.+++...+. .++.+.+.=+...+-++|... +....+.-++..|+.+|+
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 56677888887777788888888888865542 233455655567777777431 345677788899999999
Q ss_pred CCCCCCcccccchHHHHHHhhcCCCH-HHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHH
Q 009568 233 GKPQPPFDQVRPALPALAQLVHSNDE-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 311 (532)
Q Consensus 233 ~~~~~~~~~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~ 311 (532)
.+.......+.+.+|.|+.++...+. ++...++.+|..++.. ++-.+.+++.|.++.|...+.+ .+.....|+.++.
T Consensus 87 ~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~ 164 (543)
T PF05536_consen 87 DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLL 164 (543)
T ss_pred ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence 76555555667889999999987776 9999999999999954 4455889999999999999987 5667888999999
Q ss_pred HhhcCCcchhHH---HhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHH-HHHH----HHcCCHHHHHHHHhcC
Q 009568 312 NIVTGDDFQTQC---IITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ-IQAV----IDAGLVGPLVNLLQNA 383 (532)
Q Consensus 312 nl~~~~~~~~~~---~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~-~~~l----~~~~~i~~L~~ll~~~ 383 (532)
+++.......-. -.-..+++.+...+... ....+-++|..|+++....+.. .... .-..+...+..++.+.
T Consensus 165 ~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr 243 (543)
T PF05536_consen 165 NLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSR 243 (543)
T ss_pred HHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcC
Confidence 988754421100 00114556677777665 6677888999999988754211 1111 1122455566667665
Q ss_pred -chhHHHHHHHHHHHhh
Q 009568 384 -EFDIKKEAAWAISNAT 399 (532)
Q Consensus 384 -~~~v~~~a~~aL~nl~ 399 (532)
.+.-|..+......+.
T Consensus 244 ~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 244 LTPSQRDPALNLAASLL 260 (543)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 4556666666555554
No 118
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.04 E-value=3.4e-05 Score=59.21 Aligned_cols=95 Identities=19% Similarity=0.328 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcC
Q 009568 345 IKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV 424 (532)
Q Consensus 345 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~ 424 (532)
.|+.+.++|+.++.+-+..+...++. ++++++..+.+++.+||..|+.+|.|++.....+...++- .+++.|..++.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~-Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~--~IF~~L~kl~~ 78 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDE-ILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFN--EIFDALCKLSA 78 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHc
Confidence 47788999999887666666666654 8999999999999999999999999998865555555443 48899999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 009568 425 CPDPRIVTVCLEGLENILK 443 (532)
Q Consensus 425 ~~d~~v~~~al~~L~~l~~ 443 (532)
++|+.|+..+ +.|.++++
T Consensus 79 D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred CCchhHHHHH-HHHHHHhc
Confidence 9999987654 77777664
No 119
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.04 E-value=8.4e-05 Score=68.25 Aligned_cols=187 Identities=18% Similarity=0.128 Sum_probs=121.5
Q ss_pred cCCCHHHHHHHHHHHHHhccCC--hhHHHHHHHh--CchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCc
Q 009568 254 HSNDEEVLTDACWALSYLSDGT--NDKIQAVIEA--GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGA 329 (532)
Q Consensus 254 ~~~d~~v~~~a~~~L~~l~~~~--~~~~~~~~~~--~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~ 329 (532)
.+.+++.+..++..|..++.+. ......+... .++..+...+.+....+...|+.++..++...........+ .+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD-IL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH-HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH-HH
Confidence 4568899999999999887655 2222222211 56677778888888889999999999999766555544433 67
Q ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC--HHHH
Q 009568 330 LPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGT--HEQI 407 (532)
Q Consensus 330 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~--~~~~ 407 (532)
+|.|+..+.++ ...++..|..+|..++...+-. ..+ +++.+...+.+.++.+|..++..+..++.... ....
T Consensus 96 l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~-~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 96 LPPLLKKLGDS-KKFIREAANNALDAIIESCSYS-PKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H---HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcH-HHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 89999999988 8889999999999999864411 111 24667777888899999999999999987544 1111
Q ss_pred H-HHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 009568 408 K-YLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA 447 (532)
Q Consensus 408 ~-~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 447 (532)
. ...-..+++.+..++.+++++|+..+-.++..+....+.
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 1 100124788899999999999999999999998766544
No 120
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.004 Score=66.19 Aligned_cols=258 Identities=14% Similarity=0.113 Sum_probs=156.7
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhH
Q 009568 117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCR 195 (532)
Q Consensus 117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~ 195 (532)
+++..|...+++.+ ..++-.|+..++.++...|.. +. ..+|...+.++.. +++..-..++.+|+.++..+--.-
T Consensus 341 ~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~---La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPE---LA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHH---HH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 57788888888888 799999999999999866522 11 1345666665554 345566688889999986542221
Q ss_pred HHHHhcCChHHHHHHhhh-------hhhhHHHHHHHHHhhhccCCCCCC-CcccccchHHH-HHHhhcCCCHHHHHHHHH
Q 009568 196 DLVLSQGALIPLLAQLNE-------RAKLSMLRNATWTLSNFCRGKPQP-PFDQVRPALPA-LAQLVHSNDEEVLTDACW 266 (532)
Q Consensus 196 ~~~~~~~~l~~L~~ll~~-------~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~-L~~lL~~~d~~v~~~a~~ 266 (532)
..+. .+++.++.-+.. +....++..+|++++.+++..... .......+.+. |...+-+.+-.++..|..
T Consensus 416 s~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 416 SLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 1221 245556655532 224578999999999999875222 11122233333 223344566677888888
Q ss_pred HHHHhccCChhHHHHHHHhCchHHHHHhhCC---CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCch
Q 009568 267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLGH---PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK 343 (532)
Q Consensus 267 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 343 (532)
++....... |-+|.=+.++.+ -....+..+-..+..-....+..+..+++. .+.+-+.|- +.
T Consensus 494 AlqE~VGR~----------~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~----L~t~Kv~HW-d~ 558 (1133)
T KOG1943|consen 494 ALQENVGRQ----------GNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNH----LLTKKVCHW-DV 558 (1133)
T ss_pred HHHHHhccC----------CCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHH----HHhcccccc-cH
Confidence 886654321 112222222222 222334444444544444444444444431 222236667 89
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009568 344 SIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 400 (532)
Q Consensus 344 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 400 (532)
.+|..++|+|.+++...++. .....+|.++....+.+...|.-+..+.+.++.
T Consensus 559 ~irelaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 559 KIRELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred HHHHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 99999999999998765543 334578888888888888888766666666654
No 121
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.94 E-value=0.00076 Score=61.68 Aligned_cols=239 Identities=15% Similarity=0.157 Sum_probs=146.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC--CCccchhhHHHHHHHhhcCCcchhHHH
Q 009568 247 PALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQCI 324 (532)
Q Consensus 247 ~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~ 324 (532)
..|-++++.-++-.+.-|..++.++......+.....+...-.+++.+++. +...++...+.++..++.... ..+.+
T Consensus 152 eyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqdi 230 (432)
T COG5231 152 EYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQDI 230 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHHH
Confidence 334445555566677778888888876544443333343444567777765 456788999999998886433 33222
Q ss_pred hh-cCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHH-HcCCHHHHHHHHhcC--chhHHHHHHHHHHHhh
Q 009568 325 IT-YGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVI-DAGLVGPLVNLLQNA--EFDIKKEAAWAISNAT 399 (532)
Q Consensus 325 ~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~-~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~ 399 (532)
-+ ...+.-++.+.+......|-+-+|.++.|++. .....+.... ..++.+..--+...+ |.+++...-..=..+.
T Consensus 231 ~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~ 310 (432)
T COG5231 231 DKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLV 310 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 11 13556677777655466788899999999997 3334444444 334555544444433 4454433222211111
Q ss_pred c---------------------CCC--------HHHHHHHHHc--CChHHHHhhcCCCCHH-HHHHHHHHHHHHHHhhhh
Q 009568 400 S---------------------GGT--------HEQIKYLVRE--GCIKPLCDLFVCPDPR-IVTVCLEGLENILKVGEA 447 (532)
Q Consensus 400 ~---------------------~~~--------~~~~~~l~~~--~~l~~L~~lL~~~d~~-v~~~al~~L~~l~~~~~~ 447 (532)
. ..+ ......+.+. .++..|..+++..++. ...+|+.-+..+++..+.
T Consensus 311 ~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE 390 (432)
T COG5231 311 QNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE 390 (432)
T ss_pred hhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch
Confidence 0 000 1223333332 3577888888877665 556666667777665443
Q ss_pred hhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009568 448 EKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLE 499 (532)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 499 (532)
....+...|+-+.|.+|.+|++++|+-.|...+..+.+.
T Consensus 391 -------------~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 391 -------------INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred -------------HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence 356788899999999999999999999999888876543
No 122
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.94 E-value=0.0005 Score=67.69 Aligned_cols=278 Identities=13% Similarity=0.076 Sum_probs=132.2
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 009568 87 DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 166 (532)
Q Consensus 87 ~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~ 166 (532)
-..+++++++.+..+.... .....++ ..+..|-.+|+++. ...|+.|.++|..++...|+.. ..++ +-+-
T Consensus 277 ~emV~lE~Ar~v~~~~~~n---v~~~~~~-~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~kv---~vcN--~evE 346 (898)
T COG5240 277 FEMVFLEAARAVCALSEEN---VGSQFVD-QTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQKV---SVCN--KEVE 346 (898)
T ss_pred chhhhHHHHHHHHHHHHhc---cCHHHHH-HHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCcee---eecC--hhHH
Confidence 3455556666555554321 0111111 13445555555555 5666666666666665333321 1111 2233
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchH
Q 009568 167 KLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPAL 246 (532)
Q Consensus 167 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l 246 (532)
.++.+.+..+...|+..|..- +..+.-+.+ +..+...+ .+.+......++.++..||-.-|.... ..+
T Consensus 347 sLIsd~Nr~IstyAITtLLKT--Gt~e~idrL-----v~~I~sfv-hD~SD~FKiI~ida~rsLsl~Fp~k~~----s~l 414 (898)
T COG5240 347 SLISDENRTISTYAITTLLKT--GTEETIDRL-----VNLIPSFV-HDMSDGFKIIAIDALRSLSLLFPSKKL----SYL 414 (898)
T ss_pred HHhhcccccchHHHHHHHHHc--CchhhHHHH-----HHHHHHHH-HhhccCceEEeHHHHHHHHhhCcHHHH----HHH
Confidence 344444444433333333322 111111111 11122222 222233333334444444433332222 233
Q ss_pred HHHHHhhc-CCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHh
Q 009568 247 PALAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCII 325 (532)
Q Consensus 247 ~~L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~ 325 (532)
..|...|. .+.-+...++..++..+....++... .++..|..++.+.. .-.-++++|+-|....+....
T Consensus 415 ~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDce--y~~I~vrIL~iLG~EgP~a~~--- 484 (898)
T COG5240 415 DFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCE--YHQITVRILGILGREGPRAKT--- 484 (898)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcc--hhHHHHHHHHHhcccCCCCCC---
Confidence 34443332 33556667777777776665544333 34455666655432 223344555555443331110
Q ss_pred hcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009568 326 TYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 400 (532)
Q Consensus 326 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 400 (532)
....+..+..-+--. +.-+|..|..+|+.++..-.+ ......+...|-+++.+.|.++|..|..+|.++-.
T Consensus 485 P~~yvrhIyNR~iLE-N~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 485 PGKYVRHIYNRLILE-NNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred cchHHHHHHHHHHHh-hhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 011233343333334 667999999999988763222 11122245567788899999999999999999864
No 123
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.92 E-value=0.0005 Score=67.72 Aligned_cols=286 Identities=14% Similarity=0.070 Sum_probs=162.4
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009568 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 197 (532)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 197 (532)
..|.|-..|++.- ..++.+++++++.++..+ .....++ ..+..|-.+|.++....|-.|+++|..++...|+.-.
T Consensus 265 ~rpfL~~wls~k~-emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~- 339 (898)
T COG5240 265 LRPFLNSWLSDKF-EMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS- 339 (898)
T ss_pred HHHHHHHHhcCcc-hhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee-
Confidence 4455666666655 689999999999988743 1122222 3467888899999999999999999999977664211
Q ss_pred HHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc---CCCHHHHHHHHHHHHHhccC
Q 009568 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH---SNDEEVLTDACWALSYLSDG 274 (532)
Q Consensus 198 ~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~l~~~ 274 (532)
. +-+.+-.++ .+.+..+-..|+. .|........ +..++..+..+++ ++-.-+..++++.|+.+
T Consensus 340 --v--cN~evEsLI-sd~Nr~IstyAIT---tLLKTGt~e~---idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~--- 405 (898)
T COG5240 340 --V--CNKEVESLI-SDENRTISTYAIT---TLLKTGTEET---IDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLL--- 405 (898)
T ss_pred --e--cChhHHHHh-hcccccchHHHHH---HHHHcCchhh---HHHHHHHHHHHHHhhccCceEEeHHHHHHHHhh---
Confidence 1 122233333 4444444433333 3333221111 2223333333333 22233445555555443
Q ss_pred ChhHHHHHHHhCchHHHHHhh-CCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHH
Q 009568 275 TNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI 353 (532)
Q Consensus 275 ~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 353 (532)
.+.... ..+..|...| +.+..+....++.+|..+....++..+ .++..|...+.+. +.-+-+..+|
T Consensus 406 Fp~k~~-----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDc---ey~~I~vrIL 472 (898)
T COG5240 406 FPSKKL-----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDC---EYHQITVRIL 472 (898)
T ss_pred CcHHHH-----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhc---chhHHHHHHH
Confidence 333322 2233444443 345667788888888888877664443 3455677777655 2333444555
Q ss_pred HHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHH
Q 009568 354 SNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 433 (532)
Q Consensus 354 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~ 433 (532)
+-+....|....+ ...+..+..-+--.+.-+|..|..||..++...+.... ...+...|-.++.+.|.+++..
T Consensus 473 ~iLG~EgP~a~~P---~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~----~~sv~~~lkRclnD~DdeVRdr 545 (898)
T COG5240 473 GILGREGPRAKTP---GKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVS----PQSVENALKRCLNDQDDEVRDR 545 (898)
T ss_pred HHhcccCCCCCCc---chHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccccc----HHHHHHHHHHHhhcccHHHHHH
Confidence 5554321110000 00122333333334667999999999988876543222 2245667888999999999999
Q ss_pred HHHHHHHHH
Q 009568 434 CLEGLENIL 442 (532)
Q Consensus 434 al~~L~~l~ 442 (532)
|--++.++=
T Consensus 546 Asf~l~~~~ 554 (898)
T COG5240 546 ASFLLRNMR 554 (898)
T ss_pred HHHHHHhhh
Confidence 988888774
No 124
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.89 E-value=3.6e-05 Score=58.67 Aligned_cols=86 Identities=34% Similarity=0.495 Sum_probs=70.1
Q ss_pred HHHHHhhh-cCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568 76 LPAMVAGV-WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (532)
Q Consensus 76 l~~lv~~L-~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 154 (532)
|+.|++.| +++++.++..++..|.++-. ..++|.|++++++++ +.++..|+++|+.+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~i~~------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD------------PEAIPALIELLKDED-PMVRRAAARALGRIGD------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------------HHHHHHHHHHHTSSS-HHHHHHHHHHHHCCHH-------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-------
Confidence 57888988 78899999999999985422 136999999998877 9999999999998842
Q ss_pred HHHhCCChHHHHHhhCC-CCHHHHHHHHHHHH
Q 009568 155 VVIDHGAVPIFVKLLAS-PSDDVREQAVWALG 185 (532)
Q Consensus 155 ~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~ 185 (532)
..+++.|.+++.+ .+..++..|+++|+
T Consensus 61 ----~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ----PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ----HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 2368999998877 45677999999885
No 125
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.85 E-value=3.6e-05 Score=58.68 Aligned_cols=87 Identities=29% Similarity=0.438 Sum_probs=69.2
Q ss_pred HHHHHHhh-cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009568 119 VPRFVEFL-MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 197 (532)
Q Consensus 119 i~~Lv~lL-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 197 (532)
||.|++.| ++++ +.+|..|+++|+.+.. + .+++.|+.+++++++.++..++++|+.+-
T Consensus 1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 68899999 5555 9999999999995532 2 34799999999999999999999999882
Q ss_pred HHhcCChHHHHHHhhhhhhhHHHHHHHHHhh
Q 009568 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLS 228 (532)
Q Consensus 198 ~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~ 228 (532)
....++.|..++.++.+..++..++++|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12268889998866666777888888874
No 126
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.81 E-value=0.033 Score=58.54 Aligned_cols=169 Identities=17% Similarity=0.189 Sum_probs=125.1
Q ss_pred hcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009568 83 VWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAV 162 (532)
Q Consensus 83 L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i 162 (532)
+.+++...+..|++.+...+... ++ . ..+.|-+++.+.+.+ .+++.-.-.-|...+...++..-. ++
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G-~d-m-----ssLf~dViK~~~trd-~ElKrL~ylYl~~yak~~P~~~lL-----av 94 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLG-ED-M-----SSLFPDVIKNVATRD-VELKRLLYLYLERYAKLKPELALL-----AV 94 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcC-CC-h-----HHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhccCHHHHHH-----HH
Confidence 55666777888886655444432 22 1 126788888888766 899999888888999877744322 36
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccc
Q 009568 163 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV 242 (532)
Q Consensus 163 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 242 (532)
+.+.+=+.++++.+|..|+++++.+ ... . + -..+++++.+++ .++++.+++.|+.++..+-+-+ ......
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l-~~~-e----l-~~~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld--~~l~~~ 164 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLL-RVK-E----L-LGNIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLD--KDLYHE 164 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhc-ChH-H----H-HHHHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcC--Hhhhhc
Confidence 8888889999999999999999987 221 1 1 122578888888 8889999999999999998654 222233
Q ss_pred cchHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 009568 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDG 274 (532)
Q Consensus 243 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~ 274 (532)
.|.+..+..++.++||.+...|+.++..+...
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 45677778888899999999999999887644
No 127
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.0072 Score=58.01 Aligned_cols=240 Identities=13% Similarity=0.133 Sum_probs=161.8
Q ss_pred HHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC---------hhhHHHHHhCCChHH
Q 009568 94 ATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT---------SENTKVVIDHGAVPI 164 (532)
Q Consensus 94 a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~---------~~~~~~i~~~g~i~~ 164 (532)
.++.+.-++.. +.-...+++.++++.|+.+|.+.+ .++....+..|..++..+ ..-.+.+++.++++.
T Consensus 104 ~IQ~mhvlAt~--PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL 180 (536)
T KOG2734|consen 104 IIQEMHVLATM--PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL 180 (536)
T ss_pred HHHHHHhhhcC--hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence 44555555543 333456788999999999999998 899999999999887633 234567788899999
Q ss_pred HHHhhCCCCHHH------HHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh-hhhhHHHHHHHHHhhhccCCCC-C
Q 009568 165 FVKLLASPSDDV------REQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE-RAKLSMLRNATWTLSNFCRGKP-Q 236 (532)
Q Consensus 165 L~~lL~~~~~~v------~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~a~~~L~~L~~~~~-~ 236 (532)
|++-+..-++.+ ...+...+-|+....+.+...+.+.|.+.-|+.-+.. ..-......+..+++-+..+.. .
T Consensus 181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~ 260 (536)
T KOG2734|consen 181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDEN 260 (536)
T ss_pred HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchh
Confidence 999886533333 3456677888888888777888888877777775432 2334456677777777776652 2
Q ss_pred CCcccccchHHHHHHhhc----CC-----CHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHH
Q 009568 237 PPFDQVRPALPALAQLVH----SN-----DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPAL 307 (532)
Q Consensus 237 ~~~~~~~~~l~~L~~lL~----~~-----d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al 307 (532)
......-.++..+++-+. ++ ..+..++...+|+.+..... ....++....+....-+++. ....+..++
T Consensus 261 ~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~-nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Sal 338 (536)
T KOG2734|consen 261 RKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPA-NRERFLKGEGLQLMNLMLRE-KKVSRGSAL 338 (536)
T ss_pred hhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChh-hhhhhhccccHHHHHHHHHH-HHHhhhhHH
Confidence 222222345555554442 11 24567778888887765544 34667776777766656655 456678899
Q ss_pred HHHHHhhcCCc--chhHHHhhcCchHHHHHHhc
Q 009568 308 RTVGNIVTGDD--FQTQCIITYGALPYLLGLLT 338 (532)
Q Consensus 308 ~~L~nl~~~~~--~~~~~~~~~~~l~~L~~lL~ 338 (532)
++|-.+..+.+ ..+..+++..++..+..++.
T Consensus 339 kvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 339 KVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 99999998877 45566777777777666654
No 128
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.014 Score=61.66 Aligned_cols=339 Identities=16% Similarity=0.136 Sum_probs=191.9
Q ss_pred HHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhc------CC-CCHHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChH
Q 009568 93 EATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLM------RE-DYPQLQFEAAWALTNIASG--TSENTKVVIDHGAVP 163 (532)
Q Consensus 93 ~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~------~~-~~~~~~~~a~~~L~~l~~~--~~~~~~~i~~~g~i~ 163 (532)
.|...+..+.++.+... -.++++.+++.|. .+ +++.-+..|+++++++++- ...--+..++.=+++
T Consensus 391 Aa~~~l~~~~~KR~ke~-----l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~ 465 (1010)
T KOG1991|consen 391 AALDFLTTLVSKRGKET-----LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVN 465 (1010)
T ss_pred HHHHHHHHHHHhcchhh-----hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHH
Confidence 44555555554321111 1346777777776 21 2367788888999888851 111111222333456
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCC---Ccc
Q 009568 164 IFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP---PFD 240 (532)
Q Consensus 164 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~---~~~ 240 (532)
.+...++++.--+|..|+|.++.++... +.+...-..++....+.|..+.+..++..|+.+|..+..+.+.. -..
T Consensus 466 hVfP~f~s~~g~Lrarac~vl~~~~~~d--f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~ 543 (1010)
T KOG1991|consen 466 HVFPEFQSPYGYLRARACWVLSQFSSID--FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSA 543 (1010)
T ss_pred HhhHhhcCchhHHHHHHHHHHHHHHhcc--CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhh
Confidence 6666778888899999999999998432 22222223356677777755778889999999999988876332 223
Q ss_pred cccchHHHHHHhhcCCCHHHHHHHHHHH-HHhccCChhHHHHHHHhCchHHHHHhhCC---CC---ccchhhHHHHHHHh
Q 009568 241 QVRPALPALAQLVHSNDEEVLTDACWAL-SYLSDGTNDKIQAVIEAGVCPRLVELLGH---PS---PSVLIPALRTVGNI 313 (532)
Q Consensus 241 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L-~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---~~---~~v~~~al~~L~nl 313 (532)
.+.+.+..|+++.+..+.+....++..+ +..+..-......+.+ .+...+.+++.. .+ ..-...|..+|..+
T Consensus 544 hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti 622 (1010)
T KOG1991|consen 544 HVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTI 622 (1010)
T ss_pred hhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHH
Confidence 3455566666676665555555444433 2333221111111111 344555556653 12 22233444444443
Q ss_pred h---cCCcchh--HHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHH
Q 009568 314 V---TGDDFQT--QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIK 388 (532)
Q Consensus 314 ~---~~~~~~~--~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 388 (532)
. ..-+... -.-++..++|.+..+|++. -.++-.+++..+.+++...++.--.+. ++++.+.+.+.....+.-
T Consensus 623 ~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf 699 (1010)
T KOG1991|consen 623 STILLSLENHPEVLKQLEPIVLPVIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYF 699 (1010)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHH
Confidence 3 2222111 1223446778888888877 778889999999888765433221222 367788888887777888
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHH-HcCChHHHHhhcCC---CCHHHHHHHHHHHHHHHH
Q 009568 389 KEAAWAISNATSGGTHEQIKYLV-REGCIKPLCDLFVC---PDPRIVTVCLEGLENILK 443 (532)
Q Consensus 389 ~~a~~aL~nl~~~~~~~~~~~l~-~~~~l~~L~~lL~~---~d~~v~~~al~~L~~l~~ 443 (532)
....-+|.|++..+.+.....-. -.-+...+..++.+ .|++. +.|.+.+..++-
T Consensus 700 ~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~-~~a~kLle~iiL 757 (1010)
T KOG1991|consen 700 TDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDC-ESACKLLEVIIL 757 (1010)
T ss_pred HHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHH-HHHHHHHHHHHH
Confidence 89999999999887654322210 01123333344444 23333 345555555544
No 129
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.73 E-value=2.8e-05 Score=53.18 Aligned_cols=55 Identities=27% Similarity=0.402 Sum_probs=46.3
Q ss_pred ccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHH
Q 009568 300 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI 356 (532)
Q Consensus 300 ~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 356 (532)
|.++..|+++||+++...+...... ...+++.|..+|.++ ++.||..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~-~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPY-LPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHH-HHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHH-HHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 3578999999999988777665553 347899999999988 889999999999976
No 130
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.0042 Score=59.55 Aligned_cols=223 Identities=13% Similarity=0.124 Sum_probs=159.4
Q ss_pred hhccHHHHHhhhcCCChHHHHHHHHHHHHHhcCC----CCC----chhHhhhCCcHHHHHHhhcCCC-----CHHHHHHH
Q 009568 72 KLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIE----RSP----PIEEVIQSGVVPRFVEFLMRED-----YPQLQFEA 138 (532)
Q Consensus 72 ~~~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~----~~~----~~~~~i~~g~i~~Lv~lL~~~~-----~~~~~~~a 138 (532)
.+.+++.++++|..++.++....+..+..+.... ... -++.+++.++++.|++.+..-+ ..+-...+
T Consensus 123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~ 202 (536)
T KOG2734|consen 123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT 202 (536)
T ss_pred HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence 3468899999999999999999999888886532 111 2677889999999999887433 12344566
Q ss_pred HHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhh----
Q 009568 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN---- 212 (532)
Q Consensus 139 ~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~---- 212 (532)
+.++-|+..-.++.+..+++.|.+..|+.-+.. +-..-...|..+|.-+..++...+...-..+++..+++-+.
T Consensus 203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~ 282 (536)
T KOG2734|consen 203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR 282 (536)
T ss_pred HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence 778889888889999999999999988885543 34556677888888887777767777777888888888774
Q ss_pred h----hhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh--hHHHHHHHhC
Q 009568 213 E----RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN--DKIQAVIEAG 286 (532)
Q Consensus 213 ~----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~ 286 (532)
+ ....+...+...+|+.+.....+........++..+.-+++. ....+..++..|-+...+++ ..+..+++..
T Consensus 283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~l 361 (536)
T KOG2734|consen 283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEIL 361 (536)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 1 124567788888888777765444444445555555444444 45567778888888877665 5666677766
Q ss_pred chHHHHHhh
Q 009568 287 VCPRLVELL 295 (532)
Q Consensus 287 ~l~~L~~lL 295 (532)
.+..++.+.
T Consensus 362 GLrtiF~~F 370 (536)
T KOG2734|consen 362 GLRTIFPLF 370 (536)
T ss_pred hHHHHHHHH
Confidence 666665554
No 131
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.65 E-value=0.00027 Score=68.02 Aligned_cols=299 Identities=16% Similarity=0.133 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh-----CCCchhHHHHHhcCChH--
Q 009568 133 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA-----GDSPRCRDLVLSQGALI-- 205 (532)
Q Consensus 133 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~-----~~~~~~~~~~~~~~~l~-- 205 (532)
.++.++..+|..++..-.-.+..+++ ....+...+....+.++..+..++..+- .+.|...+.-...+.+-
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~ 347 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM 347 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence 57788888888887633322333332 2344444556678899999988887763 22222111111222111
Q ss_pred ----HHHHHhhhhhhhHHHHHHHHHhhhccCCC-CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHH
Q 009568 206 ----PLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQ 280 (532)
Q Consensus 206 ----~L~~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~ 280 (532)
+.-....++..+......|-+++++.... ..-+.......+-.+..+=.+.+.-+...|++++.-+.-.+.-...
T Consensus 348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d 427 (728)
T KOG4535|consen 348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQD 427 (728)
T ss_pred HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhh
Confidence 11122223445667788888888887653 1111111111122222222233444777788877766655444444
Q ss_pred HHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhc----CCcc---hhHHHhhcCchHHHHHHh--cCCCchhHHHHHHH
Q 009568 281 AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT----GDDF---QTQCIITYGALPYLLGLL--THSHKKSIKKEACW 351 (532)
Q Consensus 281 ~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~----~~~~---~~~~~~~~~~l~~L~~lL--~~~~~~~v~~~a~~ 351 (532)
...-......+...+.+..-..+..+.|++|||+. +.+. ....+.. -.+..+...- .+..+.+|+..|..
T Consensus 428 ~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navr 506 (728)
T KOG4535|consen 428 VIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVR 506 (728)
T ss_pred HHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 44444666677777777777889999999999974 2221 2222221 1122222222 12225689999999
Q ss_pred HHHHHhcCCHHHHHHHHHcC-------CHHHHHH-HHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhc
Q 009568 352 TISNITAGNRDQIQAVIDAG-------LVGPLVN-LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLF 423 (532)
Q Consensus 352 ~L~nl~~~~~~~~~~l~~~~-------~i~~L~~-ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL 423 (532)
+|+|+..- .+.+.+.+ -+..+.. ..-....+||-+||++++|+..+..-.....=+...+.+.|+.++
T Consensus 507 aLgnllQv----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv 582 (728)
T KOG4535|consen 507 ALGNLLQF----LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLV 582 (728)
T ss_pred HHhhHHHH----HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHH
Confidence 99998642 22222221 1112221 122246789999999999998864211100001112456666666
Q ss_pred CC-CCHHHHHHHHHHH
Q 009568 424 VC-PDPRIVTVCLEGL 438 (532)
Q Consensus 424 ~~-~d~~v~~~al~~L 438 (532)
.+ .+-+|+..|..+|
T Consensus 583 ~~~~NFKVRi~AA~aL 598 (728)
T KOG4535|consen 583 TSCKNFKVRIRAAAAL 598 (728)
T ss_pred HHhccceEeehhhhhh
Confidence 43 4445555544444
No 132
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.01 Score=53.20 Aligned_cols=244 Identities=19% Similarity=0.265 Sum_probs=144.9
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHH
Q 009568 85 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPI 164 (532)
Q Consensus 85 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~ 164 (532)
+....-++.|+..|+++.... .+..+.+...+++ ..++.+.+.+|+.... ..+++.
T Consensus 16 s~~l~~r~rALf~Lr~l~~~~------------~i~~i~ka~~d~s-~llkhe~ay~LgQ~~~-----------~~Av~~ 71 (289)
T KOG0567|consen 16 SQPLQNRFRALFNLRNLLGPA------------AIKAITKAFIDDS-ALLKHELAYVLGQMQD-----------EDAVPV 71 (289)
T ss_pred cHHHHHHHHHHHhhhccCChH------------HHHHHHHhcccch-hhhccchhhhhhhhcc-----------chhhHH
Confidence 334456777888888876531 2555555555554 5677777778777665 245788
Q ss_pred HHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC--------
Q 009568 165 FVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-------- 234 (532)
Q Consensus 165 L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~-------- 234 (532)
|+..|.. ..+.+|..|..+|+.+. +. . .++.+-+.. +++-.++...+..++..+-...
T Consensus 72 l~~vl~desq~pmvRhEAaealga~~-~~-~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~ 139 (289)
T KOG0567|consen 72 LVEVLLDESQEPMVRHEAAEALGAIG-DP-E---------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANS 139 (289)
T ss_pred HHHHhcccccchHHHHHHHHHHHhhc-ch-h---------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhcccccccc
Confidence 8877655 55778888888888874 22 1 133333333 4444444444444444332211
Q ss_pred -------CCCCcccccchHHHHHHhh-cCCCHHH-HHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhh
Q 009568 235 -------PQPPFDQVRPALPALAQLV-HSNDEEV-LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIP 305 (532)
Q Consensus 235 -------~~~~~~~~~~~l~~L~~lL-~~~d~~v-~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~ 305 (532)
|.++ ....-+.-+-..| ..+.+.. +..+...|.|+. .++ .+..|..-+..++.-++..
T Consensus 140 ~p~~SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g--~Ee---------aI~al~~~l~~~SalfrhE 206 (289)
T KOG0567|consen 140 SPYISVDPAPP--ANLSSVHELRAELLDETKPLFERYRAMFYLRNIG--TEE---------AINALIDGLADDSALFRHE 206 (289)
T ss_pred CccccCCCCCc--cccccHHHHHHHHHhcchhHHHHHhhhhHhhccC--cHH---------HHHHHHHhcccchHHHHHH
Confidence 1111 1122233333333 3333333 445555555543 222 2444555566677778999
Q ss_pred HHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCc
Q 009568 306 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH-SHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAE 384 (532)
Q Consensus 306 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 384 (532)
+..++|.|-+. -.+|.|.+.|.. .+.+.||.+|+.+|+.++. ++ .++.|...+.+.+
T Consensus 207 vAfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~---------~~~vL~e~~~D~~ 264 (289)
T KOG0567|consen 207 VAFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--ED---------CVEVLKEYLGDEE 264 (289)
T ss_pred HHHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HH---------HHHHHHHHcCCcH
Confidence 99999987642 346677777743 3378999999999999974 44 3456777787777
Q ss_pred hhHHHHHHHHHHHhh
Q 009568 385 FDIKKEAAWAISNAT 399 (532)
Q Consensus 385 ~~v~~~a~~aL~nl~ 399 (532)
+-|+..+..+|.-+-
T Consensus 265 ~vv~esc~valdm~e 279 (289)
T KOG0567|consen 265 RVVRESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHHHHHHHH
Confidence 778887777775543
No 133
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.60 E-value=0.00025 Score=68.26 Aligned_cols=309 Identities=17% Similarity=0.185 Sum_probs=168.0
Q ss_pred HHHHhhhcCC--ChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc-----CC
Q 009568 77 PAMVAGVWSD--DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS-----GT 149 (532)
Q Consensus 77 ~~lv~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~-----~~ 149 (532)
.....++.+- ...++.++++.|.-++.. -....+....+...+...+.... +.++..++.++..+.. ..
T Consensus 256 ~~~~~~~~~~~~ps~~rle~~qvl~~~a~~---~~~~~~~~~~l~RvI~~~~~~~~-p~~~l~~a~ll~~lg~~lv~~~~ 331 (728)
T KOG4535|consen 256 SDAGSAAGSTYEPSPMRLEALQVLTLLARY---FSMTQAYLMELGRVICKCMGEAD-PSIQLHGAKLLEELGTGLIQQYK 331 (728)
T ss_pred hhHHhhhcCccCCchhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHccCCCCC-hHHHHHHHHHHHHHHHHHhhhcC
Confidence 3444444432 245777888877766643 11112222224444455556666 8999999998888754 22
Q ss_pred hhhHHHHHhCCChHHHHH-------hhCCCCHHHHHHHHHHHHHhhCCC----chhHHHHHhcCChHHHHHHhhhhhhhH
Q 009568 150 SENTKVVIDHGAVPIFVK-------LLASPSDDVREQAVWALGNVAGDS----PRCRDLVLSQGALIPLLAQLNERAKLS 218 (532)
Q Consensus 150 ~~~~~~i~~~g~i~~L~~-------lL~~~~~~v~~~a~~~L~nl~~~~----~~~~~~~~~~~~l~~L~~ll~~~~~~~ 218 (532)
|+..+.-+..|.+-.+.- .-++..+..+...+-++.+|.... +.-|.. ..+.++.-..++.+.-
T Consensus 332 P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T-----~~~~Fl~GC~d~~~~l 406 (728)
T KOG4535|consen 332 PDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQT-----LCITFLLGCNDSKNRL 406 (728)
T ss_pred CCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchh-----hhHHHHhcccchHHHH
Confidence 332222222221111111 112344566667777777775321 111111 1122222222344445
Q ss_pred HHHHHHHHhhhccCCC-CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC----Chh---HHHHHHHhCchHH
Q 009568 219 MLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG----TND---KIQAVIEAGVCPR 290 (532)
Q Consensus 219 ~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~----~~~---~~~~~~~~~~l~~ 290 (532)
+...|..++.-+.-++ ..........+...+...|.+..-..++.+.|+++++++. .+. ....+.. -.+..
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~ 485 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLK 485 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHH
Confidence 6666777777666665 3334445566667777777777778999999999999842 111 2121111 12222
Q ss_pred HHHhh---CCCCccchhhHHHHHHHhhcCCcchhHHHhhcC-------chHHHHH-HhcCCCchhHHHHHHHHHHHHhcC
Q 009568 291 LVELL---GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYG-------ALPYLLG-LLTHSHKKSIKKEACWTISNITAG 359 (532)
Q Consensus 291 L~~lL---~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~-------~l~~L~~-lL~~~~~~~v~~~a~~~L~nl~~~ 359 (532)
+...- .-.+..++..+.++|+|+...-+ .+.+.+ .+..+.. ..... ...|+.+||.+++|+..+
T Consensus 486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq----~i~~~~~~e~~~~~~~~l~~~v~~~~-~~kV~WNaCya~gNLfkn 560 (728)
T KOG4535|consen 486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQ----PIEKPTFAEIIEESIQALISTVLTEA-AMKVRWNACYAMGNLFKN 560 (728)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHH----HhhhccHHHHHHHHHHhcccceeccc-ccccchHHHHHHHHhhcC
Confidence 22222 22467899999999999985322 222222 2222222 22223 678999999999999875
Q ss_pred CHHHHHHH-HHcCCHHHHHHHHhc-CchhHHHHHHHHHHHhhc
Q 009568 360 NRDQIQAV-IDAGLVGPLVNLLQN-AEFDIKKEAAWAISNATS 400 (532)
Q Consensus 360 ~~~~~~~l-~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~ 400 (532)
..--.+.. ....+++.|+.++.+ .+.+||..|+.+|.--..
T Consensus 561 ~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 561 PALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred ccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 22101100 112357778877765 489999999999876544
No 134
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.54 E-value=0.014 Score=61.02 Aligned_cols=239 Identities=16% Similarity=0.110 Sum_probs=153.6
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHH
Q 009568 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVL 199 (532)
Q Consensus 121 ~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 199 (532)
.+...+.....|.+...|.|.+...+.........+- -++...+..+. +..+.++-.|+.+++..|+... +.. .
T Consensus 453 ~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v-l~~--~ 527 (1005)
T KOG2274|consen 453 MIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV-LLS--L 527 (1005)
T ss_pred HHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCcee-ccc--c
Confidence 3333444444477777899999877763222211111 12233333333 3456677778888877763221 111 1
Q ss_pred hcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc--CCCHHHHHHHHHHHHHhccCChh
Q 009568 200 SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH--SNDEEVLTDACWALSYLSDGTND 277 (532)
Q Consensus 200 ~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~l~~~~~~ 277 (532)
.-+++..|+++. ...+.++......+|+..|..+|.........+.|.+..++. ++||.+...+-.++-.++.....
T Consensus 528 ~p~ild~L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~ 606 (1005)
T KOG2274|consen 528 QPMILDGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAAN 606 (1005)
T ss_pred chHHHHHHHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh
Confidence 223556666666 555778888899999999999877777777788887776653 56887777776666666642221
Q ss_pred HHHHHHHhCchHHHHHhhCCCC----ccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHH
Q 009568 278 KIQAVIEAGVCPRLVELLGHPS----PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI 353 (532)
Q Consensus 278 ~~~~~~~~~~l~~L~~lL~~~~----~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 353 (532)
+ . -.....+|.+++.|..+. ......++.+|..+..+.+.-.-..+-+-++|.+.++.-|+.+...-..+..||
T Consensus 607 ~-g-~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcL 684 (1005)
T KOG2274|consen 607 Y-G-PMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECL 684 (1005)
T ss_pred h-c-chHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHH
Confidence 1 1 122367999999998766 455666788888888776644334444577888888887765788889999999
Q ss_pred HHHhcCCHHHHHHH
Q 009568 354 SNITAGNRDQIQAV 367 (532)
Q Consensus 354 ~nl~~~~~~~~~~l 367 (532)
..+...+.++...-
T Consensus 685 ra~Is~~~eq~~t~ 698 (1005)
T KOG2274|consen 685 RALISVTLEQLLTW 698 (1005)
T ss_pred HHHHhcCHHHHHhh
Confidence 99887666655443
No 135
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.031 Score=59.21 Aligned_cols=297 Identities=15% Similarity=0.154 Sum_probs=168.2
Q ss_pred HHHHHHHHHhcCC-hhhHHHHHhCCChHHHHHhhC------C--CCHHHHHHHHHHHHHhhC---CCchhHHHHHhcCCh
Q 009568 137 EAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLA------S--PSDDVREQAVWALGNVAG---DSPRCRDLVLSQGAL 204 (532)
Q Consensus 137 ~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~lL~------~--~~~~v~~~a~~~L~nl~~---~~~~~~~~~~~~~~l 204 (532)
.|..++..++... .+. + .|+++.+++.|. . .++.-.+-|+.++++++. ....+++. ++.-.+
T Consensus 391 Aa~~~l~~~~~KR~ke~---l--~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~-mE~flv 464 (1010)
T KOG1991|consen 391 AALDFLTTLVSKRGKET---L--PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQ-MEYFLV 464 (1010)
T ss_pred HHHHHHHHHHHhcchhh---h--hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHH-HHHHHH
Confidence 4555666666522 222 1 256677777776 2 456778889999999873 12222222 233345
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc-CCCHHHHHHHHHHHHHhccCChhH---HH
Q 009568 205 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-SNDEEVLTDACWALSYLSDGTNDK---IQ 280 (532)
Q Consensus 205 ~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~---~~ 280 (532)
..++..+ +++..-++..|||+++.++.-+ .........++....+.|. +.+-.|+..|+.+|..+..+.... +.
T Consensus 465 ~hVfP~f-~s~~g~Lrarac~vl~~~~~~d-f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~ 542 (1010)
T KOG1991|consen 465 NHVFPEF-QSPYGYLRARACWVLSQFSSID-FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS 542 (1010)
T ss_pred HHhhHhh-cCchhHHHHHHHHHHHHHHhcc-CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence 5555556 6777789999999999999653 3333444667777777777 667789999999999888665432 22
Q ss_pred HHHHhCchHHHHHhhCCCCccchhhHHHHH-HHhhcCCcchhHHHhhcCchHHHHHHhcCC--Cc---hhHHHHHHHHHH
Q 009568 281 AVIEAGVCPRLVELLGHPSPSVLIPALRTV-GNIVTGDDFQTQCIITYGALPYLLGLLTHS--HK---KSIKKEACWTIS 354 (532)
Q Consensus 281 ~~~~~~~l~~L~~lL~~~~~~v~~~al~~L-~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~---~~v~~~a~~~L~ 354 (532)
..+. ++++.|+.+.+.-+.+....++..+ +..+..-......+ -.++.....+++..+ .+ ..-.-.|.++|.
T Consensus 543 ~hvp-~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL-~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~ 620 (1010)
T KOG1991|consen 543 AHVP-PIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVEL-CQNLAETFLKVLQTSEDEDESDDDKAIAASGILR 620 (1010)
T ss_pred hhhh-HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHH-HHHHHHHHHHHHhccCCCCccchHHHHHHHHHHH
Confidence 2222 4555666666654444333333322 22221111111111 124455566666531 01 222334444444
Q ss_pred HHhc------CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCH
Q 009568 355 NITA------GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDP 428 (532)
Q Consensus 355 nl~~------~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~ 428 (532)
.+.. ..++..+. ++..++|.+-.++++.-.++-.+++..+.+++... ++....++ |+++.+.+++....-
T Consensus 621 Ti~Til~s~e~~p~vl~~-le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~-~~Isp~mW--~ll~li~e~~~~~~~ 696 (1010)
T KOG1991|consen 621 TISTILLSLENHPEVLKQ-LEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLS-KEISPIMW--GLLELILEVFQDDGI 696 (1010)
T ss_pred HHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhh-cccCHHHH--HHHHHHHHHHhhhhH
Confidence 4332 23333322 23345666666777766778888887777776542 22223333 366777777776666
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 009568 429 RIVTVCLEGLENILKVGEA 447 (532)
Q Consensus 429 ~v~~~al~~L~~l~~~~~~ 447 (532)
+-.....-+|.|++..|..
T Consensus 697 dyf~d~~~~l~N~vt~g~~ 715 (1010)
T KOG1991|consen 697 DYFTDMMPALHNYVTYGTP 715 (1010)
T ss_pred HHHHHHHHHHhhheeeCch
Confidence 6666677777777776655
No 136
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.52 E-value=0.0006 Score=52.33 Aligned_cols=67 Identities=16% Similarity=0.354 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCCchhHHHHHh
Q 009568 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL--ASPSDDVREQAVWALGNVAGDSPRCRDLVLS 200 (532)
Q Consensus 134 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 200 (532)
++...+.+|+|++..++...+.+.+.|++|.++... +..+|-+++.|++++.|++..++..+..+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 356778999999999999999999999999999864 4478999999999999999999998877654
No 137
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.50 E-value=0.025 Score=56.87 Aligned_cols=297 Identities=15% Similarity=0.118 Sum_probs=168.7
Q ss_pred ChHHHHHHHHHHHHHhcCCCCC----chhHhhhCCcHHHHHHhhcCC----C--CHHHHHHHHHHHHHHhcCC-hhhHHH
Q 009568 87 DSSLQLEATTQFRKLLSIERSP----PIEEVIQSGVVPRFVEFLMRE----D--YPQLQFEAAWALTNIASGT-SENTKV 155 (532)
Q Consensus 87 ~~~~~~~a~~~l~~l~~~~~~~----~~~~~i~~g~i~~Lv~lL~~~----~--~~~~~~~a~~~L~~l~~~~-~~~~~~ 155 (532)
+.......+..+..++...... ......+..++|.+.++.... . ++.+...+..++..+...- .+....
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4556667778887777653222 233344555888888776432 1 1355555566666655432 333333
Q ss_pred HHhCCChHHHHHhhC----------C------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHH
Q 009568 156 VIDHGAVPIFVKLLA----------S------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSM 219 (532)
Q Consensus 156 i~~~g~i~~L~~lL~----------~------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~ 219 (532)
++ ..+..++. . ...........+++.+-.+..- . .....+..++.+.....++..
T Consensus 136 ~~-----~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~-~---~~~~ll~~l~~~~~~~~~~~~ 206 (415)
T PF12460_consen 136 IL-----DELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSL-P---DLEELLQSLLNLALSSEDEFS 206 (415)
T ss_pred HH-----HHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCc-c---CHHHHHHHHHHHHHcCCChHH
Confidence 32 22333221 0 1111222222333333222110 0 111256667777656666778
Q ss_pred HHHHHHHhhhccCCCCCCCcccccchHHHHHHhh-cCCC----HHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHh
Q 009568 220 LRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV-HSND----EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 294 (532)
Q Consensus 220 ~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL-~~~d----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 294 (532)
+..++.+++.+...-+... ....++..+...+ ...+ .....-..|...-+.-....... .++..|+.+
T Consensus 207 ~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~l 279 (415)
T PF12460_consen 207 RLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLEL 279 (415)
T ss_pred HHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHH
Confidence 8888888887776532222 3344555554444 2223 33444445555444422222212 456778888
Q ss_pred hCCCCccchhhHHHHHHHhhcCCcc--------hhHHHhhc----CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH
Q 009568 295 LGHPSPSVLIPALRTVGNIVTGDDF--------QTQCIITY----GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD 362 (532)
Q Consensus 295 L~~~~~~v~~~al~~L~nl~~~~~~--------~~~~~~~~----~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 362 (532)
+.+ +.+...+.+.++-+....+. ..+.+... .++|.++...+.. +...+.....+|+++..+-|.
T Consensus 280 L~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs~ll~~vP~ 356 (415)
T PF12460_consen 280 LSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALSHLLKNVPK 356 (415)
T ss_pred hCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhCCH
Confidence 887 56788888999888876332 12222232 3567777777766 666888888999999987665
Q ss_pred HHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009568 363 QIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG 402 (532)
Q Consensus 363 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 402 (532)
.+-.---..++|.|++.|..++.+++..++.+|..+....
T Consensus 357 ~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 357 SVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 4311111348999999999999999999999999998865
No 138
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.50 E-value=0.12 Score=57.56 Aligned_cols=144 Identities=10% Similarity=0.050 Sum_probs=99.9
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 154 (532)
.+..++..|..+...+|..|+++|..+......--....++.|+. .-+.+.. ..+|..|+..++......++...
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh----~R~~Dss-asVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVH----GRLNDSS-ASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHH----Hhhccch-hHHHHHHHHHHhhhhhccHHHHH
Confidence 356677778888899999999999999976321112223333333 3344445 79999999999987765666655
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh--hhhhHHHHHHHHHhhhccC
Q 009568 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--RAKLSMLRNATWTLSNFCR 232 (532)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~~~~~~a~~~L~~L~~ 232 (532)
... ..+..-+.++...||..++..+..+|...|.+-.. ...+.++|.. ++...+...++.++.++..
T Consensus 892 qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 892 QYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI------VDMCAKMLRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred HHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 444 44555566678999999999999999888765332 3344455542 3334488888899988887
Q ss_pred CC
Q 009568 233 GK 234 (532)
Q Consensus 233 ~~ 234 (532)
.+
T Consensus 961 ~p 962 (1692)
T KOG1020|consen 961 TP 962 (1692)
T ss_pred cC
Confidence 76
No 139
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.12 Score=55.50 Aligned_cols=343 Identities=13% Similarity=0.134 Sum_probs=176.8
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 154 (532)
.+..+.+.+++.|..++..|++.+.++.+.....-.+. +|...++++...+.+..=..|+-+|+.++...----.
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~-----vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQ-----VIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHH-----HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 45667778888999999999999999998632111222 4555566665444345566888899998873211111
Q ss_pred HHHhCCChHHHHHhhC--------CCCHHHHHHHHHHHHHhhCCCchh-HHHHHhcCChHHHHHHhhhhhhhHHHHHHHH
Q 009568 155 VVIDHGAVPIFVKLLA--------SPSDDVREQAVWALGNVAGDSPRC-RDLVLSQGALIPLLAQLNERAKLSMLRNATW 225 (532)
Q Consensus 155 ~i~~~g~i~~L~~lL~--------~~~~~v~~~a~~~L~nl~~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~ 225 (532)
.+. .++|.+++.|. +....||+.|+.+++.++...... -+-++. .....|+..-.-+.+..+++.|..
T Consensus 417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhHhHHHHH
Confidence 111 24566666553 234689999999999987543221 111111 112222221124567788999988
Q ss_pred HhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHh-hCCCCccchh
Q 009568 226 TLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LGHPSPSVLI 304 (532)
Q Consensus 226 ~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~ 304 (532)
++-......++.+ .+++.+. ....-.-..+.++...++.-....+..... ++..++.. +.|=+..++.
T Consensus 494 AlqE~VGR~~n~p-----~Gi~Lis-~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~-----~f~~L~t~Kv~HWd~~ire 562 (1133)
T KOG1943|consen 494 ALQENVGRQGNFP-----HGISLIS-TIDYFSVTNRSNCYLDLCVSIAEFSGYREP-----VFNHLLTKKVCHWDVKIRE 562 (1133)
T ss_pred HHHHHhccCCCCC-----Cchhhhh-hcchhhhhhhhhHHHHHhHHHHhhhhHHHH-----HHHHHHhcccccccHHHHH
Confidence 8876655432211 1111111 110001112222222222222222222222 22232222 4445778899
Q ss_pred hHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH---HHHHHHH---cC---CHHH
Q 009568 305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD---QIQAVID---AG---LVGP 375 (532)
Q Consensus 305 ~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~---~~~~l~~---~~---~i~~ 375 (532)
.+.++|.+|+...+ .....+.++.++....+. +...+..+..+.+.++.+... ....+.+ ++ +++.
T Consensus 563 laa~aL~~Ls~~~p----k~~a~~~L~~lld~~ls~-~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~ 637 (1133)
T KOG1943|consen 563 LAAYALHKLSLTEP----KYLADYVLPPLLDSTLSK-DASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPP 637 (1133)
T ss_pred HHHHHHHHHHHhhH----HhhcccchhhhhhhhcCC-ChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccH
Confidence 99999999886544 334447778888877777 777777766666666542111 1111111 12 2333
Q ss_pred HHHH-HhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 009568 376 LVNL-LQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILK 443 (532)
Q Consensus 376 L~~l-l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~ 443 (532)
+... +..+ ..-++...+..+.++......-.... +-.+.-..+.+.+..++ .++..+.+++..+..
T Consensus 638 ~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~-v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s 705 (1133)
T KOG1943|consen 638 ICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDF-VIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVS 705 (1133)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHH-HHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHH
Confidence 3322 2222 23455555666666655433222222 22233334444443344 666667777666654
No 140
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.04 Score=59.62 Aligned_cols=237 Identities=13% Similarity=0.056 Sum_probs=144.6
Q ss_pred HHHHHhhhhhhhHHHHHHHHHhhhccCCCCC--CCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHH
Q 009568 206 PLLAQLNERAKLSMLRNATWTLSNFCRGKPQ--PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVI 283 (532)
Q Consensus 206 ~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~--~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~ 283 (532)
.+.....++.+..++..+...|..++..++. ........+...|..-+++.+...+...+.++..+....+.....++
T Consensus 657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3344444555788999999999999988421 12223345556666777777888888999999888866552222233
Q ss_pred HhCchHHHHHhhCCCCccchhhHHHHHHHhhc-------CCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHH
Q 009568 284 EAGVCPRLVELLGHPSPSVLIPALRTVGNIVT-------GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI 356 (532)
Q Consensus 284 ~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~-------~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 356 (532)
. ..++-++-.+.+.+...+..|..+|-.|+. +++. ....++ ..++.+...+... ...+......++..+
T Consensus 737 ~-k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~ln-efl~~Isagl~gd-~~~~~as~Ivai~~i 812 (1176)
T KOG1248|consen 737 P-KLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILN-EFLSIISAGLVGD-STRVVASDIVAITHI 812 (1176)
T ss_pred H-HHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHH-HHHHHHHhhhccc-HHHHHHHHHHHHHHH
Confidence 3 234444444477777777777777776662 1111 111222 2333343333333 333333324455555
Q ss_pred hcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHH
Q 009568 357 TAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE 436 (532)
Q Consensus 357 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~ 436 (532)
.......+..-.-.+++..+.-+|.++.+++++.|+..+.-++..-+........ ..+++.+..++++...+++..+..
T Consensus 813 l~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~d~k~~~r~Kvr~ 891 (1176)
T KOG1248|consen 813 LQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSHDHKIKVRKKVRL 891 (1176)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4321221111111235666777788899999999999999998876544433322 247888888888888899999888
Q ss_pred HHHHHHHhhhh
Q 009568 437 GLENILKVGEA 447 (532)
Q Consensus 437 ~L~~l~~~~~~ 447 (532)
.|..+++....
T Consensus 892 LlekLirkfg~ 902 (1176)
T KOG1248|consen 892 LLEKLIRKFGA 902 (1176)
T ss_pred HHHHHHHHhCH
Confidence 88888876543
No 141
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.012 Score=60.69 Aligned_cols=260 Identities=14% Similarity=0.161 Sum_probs=145.4
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH--
Q 009568 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR-- 195 (532)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~-- 195 (532)
..+.+-.++.+.. ..+..+|+.++.++...++.... ..+..|--+++++...+|-.|.++|..++...|..-
T Consensus 246 ~~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 246 LFPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred HHHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 4455556666666 78999999999999875544322 267888888999999999999999999986554321
Q ss_pred ------HHHHhcC---ChHHHHHHhhh---hhhhHHHHHHHHHhhhccCCCCCCCc-----------ccccchHHHHHHh
Q 009568 196 ------DLVLSQG---ALIPLLAQLNE---RAKLSMLRNATWTLSNFCRGKPQPPF-----------DQVRPALPALAQL 252 (532)
Q Consensus 196 ------~~~~~~~---~l~~L~~ll~~---~~~~~~~~~a~~~L~~L~~~~~~~~~-----------~~~~~~l~~L~~l 252 (532)
..+-..+ ...++..+|.. ..-..+......+.++++.+...... ......+..|..+
T Consensus 320 cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~ 399 (865)
T KOG1078|consen 320 CNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNM 399 (865)
T ss_pred cchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 1111100 12222333321 11223344444444554443211000 0112344455555
Q ss_pred hcCC-CHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchH
Q 009568 253 VHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALP 331 (532)
Q Consensus 253 L~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~ 331 (532)
|+.. .-+.+.+...++..+....++... ..+..|..++.+.. ...-+.++|.-+....+.. ......+.
T Consensus 400 Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a---~~Pskyir 469 (865)
T KOG1078|consen 400 LREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKA---PNPSKYIR 469 (865)
T ss_pred HHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCC---CCcchhhH
Confidence 5432 334455555555555543333222 23444555544332 2333444444443322211 11223344
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009568 332 YLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT 399 (532)
Q Consensus 332 ~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 399 (532)
.+.+.+.-. +..+|..|..+|.++..+++... ..+.-.|.+++.+.|.++|..|..+|.++.
T Consensus 470 ~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l~-----~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 470 FIYNRVILE-NAIVRAAAVSALAKFGAQDVVLL-----PSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCcc-----ccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 455554444 77899999999999986554322 235567788888899999999999999886
No 142
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.44 E-value=0.00039 Score=44.03 Aligned_cols=39 Identities=38% Similarity=0.760 Sum_probs=35.7
Q ss_pred hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009568 150 SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 188 (532)
Q Consensus 150 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~ 188 (532)
++.+..+++.|+++.|+.++.++++.++..++|+|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347778899999999999999999999999999999996
No 143
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.42 E-value=0.013 Score=61.34 Aligned_cols=318 Identities=12% Similarity=0.084 Sum_probs=180.2
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHH
Q 009568 85 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPI 164 (532)
Q Consensus 85 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~ 164 (532)
+.-|.....+...+.+..+.. .....+.. -++...+..+..+..+-++..|+++++..+. ....... ..+++..
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~~~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~-~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSST--VINPQLLQ-HFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSL-QPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhh--ccchhHHH-HHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceecccc-chHHHHH
Confidence 444666667777777766541 11111111 1344555555554446788888888887774 2221111 2366778
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhh-hhhhhHHHHHHHHHhhhccCCCCCCCccccc
Q 009568 165 FVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-ERAKLSMLRNATWTLSNFCRGKPQPPFDQVR 243 (532)
Q Consensus 165 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 243 (532)
|+++....+.++.-..+.+|+..+.-+|+.... .+..+.|..+.+.. .+.+|.+...+--++-.++... ........
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~e 612 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQE 612 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchHH
Confidence 888887788899999999999999888765433 35556666666553 4567777777777777776642 22223446
Q ss_pred chHHHHHHhhcCCC----HHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC-CCccchhhHHHHHHHhhcCCc
Q 009568 244 PALPALAQLVHSND----EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDD 318 (532)
Q Consensus 244 ~~l~~L~~lL~~~d----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~ 318 (532)
..+|.++..+..++ .....-++..|..+..+.+.-....+-.-++|.+.++.-| ++......+-.||..+.....
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 78999999998765 4455555555555554433223333334677888777654 566777888888888887655
Q ss_pred chhHHHhhcCchH--HHHHHhcCCCchhHHHHHHHHHHHHhc----CCHHHHHHHHHcCCHHHHHHHH-hcCchhHHHHH
Q 009568 319 FQTQCIITYGALP--YLLGLLTHSHKKSIKKEACWTISNITA----GNRDQIQAVIDAGLVGPLVNLL-QNAEFDIKKEA 391 (532)
Q Consensus 319 ~~~~~~~~~~~l~--~L~~lL~~~~~~~v~~~a~~~L~nl~~----~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a 391 (532)
++...--..++.. .++.++..--+++.-..++..+|.+.. +-+..+...++. ++..++.-| +.....+....
T Consensus 693 eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~lsviQsL 771 (1005)
T KOG2274|consen 693 EQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQQAETLSVIQSL 771 (1005)
T ss_pred HHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhhHHHHHHH
Confidence 4433222222222 333333211133344444545554432 211112221111 233333333 33467788888
Q ss_pred HHHHHHhhcCCCHHHHHHHH
Q 009568 392 AWAISNATSGGTHEQIKYLV 411 (532)
Q Consensus 392 ~~aL~nl~~~~~~~~~~~l~ 411 (532)
..+++.++..........|.
T Consensus 772 i~VfahL~~t~~~~~l~FL~ 791 (1005)
T KOG2274|consen 772 IMVFAHLVHTDLDQLLNFLS 791 (1005)
T ss_pred HHHHHHHhhCCHHHHHHHHH
Confidence 88888887754333333333
No 144
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.41 E-value=0.014 Score=52.45 Aligned_cols=256 Identities=17% Similarity=0.204 Sum_probs=159.6
Q ss_pred HHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009568 119 VPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 197 (532)
Q Consensus 119 i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 197 (532)
+..+.+.|...+ ...-++.|+..|.++... +.+..+.+...+.+..++...+.+|+.....
T Consensus 5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~-----------~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~------- 66 (289)
T KOG0567|consen 5 IETIGNILVNKSQPLQNRFRALFNLRNLLGP-----------AAIKAITKAFIDDSALLKHELAYVLGQMQDE------- 66 (289)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHhhhccCCh-----------HHHHHHHHhcccchhhhccchhhhhhhhccc-------
Confidence 445555555433 134566777777777662 2256666666666667777888888877432
Q ss_pred HHhcCChHHHHHHhh-hhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q 009568 198 VLSQGALIPLLAQLN-ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN 276 (532)
Q Consensus 198 ~~~~~~l~~L~~ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~ 276 (532)
..++.|+..+. .+..+-++..+..+|..+.. ...++.+-+..+++-..|.+.+..++.++-....
T Consensus 67 ----~Av~~l~~vl~desq~pmvRhEAaealga~~~----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~ 132 (289)
T KOG0567|consen 67 ----DAVPVLVEVLLDESQEPMVRHEAAEALGAIGD----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDI 132 (289)
T ss_pred ----hhhHHHHHHhcccccchHHHHHHHHHHHhhcc----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhc
Confidence 25778888774 34467788899999998873 3567788888877777788877777777643211
Q ss_pred hHH----HHH--H------HhCchHHHHHhhCCC-Ccc-chhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCc
Q 009568 277 DKI----QAV--I------EAGVCPRLVELLGHP-SPS-VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHK 342 (532)
Q Consensus 277 ~~~----~~~--~------~~~~l~~L~~lL~~~-~~~-v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 342 (532)
-.. ... + ..+-+..+-..|.+. .+. -+..|+..|.|+-. + ..+..|..-+..+ +
T Consensus 133 ~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--E---------eaI~al~~~l~~~-S 200 (289)
T KOG0567|consen 133 IDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--E---------EAINALIDGLADD-S 200 (289)
T ss_pred cccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--H---------HHHHHHHHhcccc-h
Confidence 000 000 0 001122222222211 111 13344444444331 1 2345666677777 8
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHH
Q 009568 343 KSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLC 420 (532)
Q Consensus 343 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~ 420 (532)
.-.|.++++++|.+-+ +. .+|.|...|... ++-||.+|+.||+.++.. .+++.|.
T Consensus 201 alfrhEvAfVfGQl~s--~~---------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e------------~~~~vL~ 257 (289)
T KOG0567|consen 201 ALFRHEVAFVFGQLQS--PA---------AIPSLIKVLLDETEHPMVRHEAAEALGAIADE------------DCVEVLK 257 (289)
T ss_pred HHHHHHHHHHHhhccc--hh---------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH------------HHHHHHH
Confidence 8999999999999854 22 456777777653 789999999999999752 2577788
Q ss_pred hhcCCCCHHHHHHHHHHHHHH
Q 009568 421 DLFVCPDPRIVTVCLEGLENI 441 (532)
Q Consensus 421 ~lL~~~d~~v~~~al~~L~~l 441 (532)
.++.++++-|+..|.-+|..+
T Consensus 258 e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 258 EYLGDEERVVRESCEVALDML 278 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHHH
Confidence 888888888877777666644
No 145
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.026 Score=57.94 Aligned_cols=142 Identities=14% Similarity=0.127 Sum_probs=88.2
Q ss_pred CchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhc------CCCchhHHHHHHHHHHHHhcC
Q 009568 286 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT------HSHKKSIKKEACWTISNITAG 359 (532)
Q Consensus 286 ~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~ 359 (532)
|++-.++..|..++-+++..++.+.-.|++... ... ++..|-+=+. +......|.....++..++..
T Consensus 317 ~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN--ved-----iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~ 389 (948)
T KOG1058|consen 317 GLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN--VED-----IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVK 389 (948)
T ss_pred HHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc--HHH-----HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhc
Confidence 455567778888999999999988888876443 111 1222222221 111346788888999999887
Q ss_pred CHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC-CCHHHHHHHHHHH
Q 009568 360 NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC-PDPRIVTVCLEGL 438 (532)
Q Consensus 360 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~d~~v~~~al~~L 438 (532)
.|+.. ..+++.|++.+.+.++......+..+......- +.. ...++..|+.-+.. ...++...++|++
T Consensus 390 Fp~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~-p~L-----r~~ii~~l~~~~~~irS~ki~rgalwi~ 458 (948)
T KOG1058|consen 390 FPEVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKF-PNL-----RASIIEKLLETFPQIRSSKICRGALWIL 458 (948)
T ss_pred ChHHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhC-chH-----HHHHHHHHHHhhhhhcccccchhHHHHH
Confidence 77644 346789999998887665544444444444321 111 22345556555542 5567778888888
Q ss_pred HHHHHhh
Q 009568 439 ENILKVG 445 (532)
Q Consensus 439 ~~l~~~~ 445 (532)
...+...
T Consensus 459 GeYce~~ 465 (948)
T KOG1058|consen 459 GEYCEGL 465 (948)
T ss_pred HHHHhhh
Confidence 8776543
No 146
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.40 E-value=0.0012 Score=50.76 Aligned_cols=92 Identities=14% Similarity=0.182 Sum_probs=67.8
Q ss_pred hhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc
Q 009568 303 LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN 382 (532)
Q Consensus 303 ~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~ 382 (532)
|..++.+|+.++.+-.......++ .+++.++..+.++ ++.||..||.+|.|++....+.+-..+ ..+++.|.+++.+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~D 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSAD 79 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence 556777788777666655544444 6889999999999 999999999999999874333332222 3488899999999
Q ss_pred CchhHHHHHHHHHHHh
Q 009568 383 AEFDIKKEAAWAISNA 398 (532)
Q Consensus 383 ~~~~v~~~a~~aL~nl 398 (532)
.++.||..| ..|-++
T Consensus 80 ~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 80 PDENVRSAA-ELLDRL 94 (97)
T ss_pred CchhHHHHH-HHHHHH
Confidence 999988665 555444
No 147
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.027 Score=57.70 Aligned_cols=170 Identities=18% Similarity=0.197 Sum_probs=112.8
Q ss_pred chHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHH-hcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009568 287 VCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL-LTHSHKKSIKKEACWTISNITAGNRDQIQ 365 (532)
Q Consensus 287 ~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 365 (532)
+=+.+-+++.+.++-+|...+.+++---.++. +.+++..|+.+ .++. +.+||+.|..+|+-++..++++
T Consensus 520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~-nDDVrRaAVialGFVl~~dp~~-- 589 (929)
T KOG2062|consen 520 ADPLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDV-NDDVRRAAVIALGFVLFRDPEQ-- 589 (929)
T ss_pred hHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhccccccc-chHHHHHHHHHheeeEecChhh--
Confidence 33445566777788788777766654333322 22456666666 4555 8899999999999999888874
Q ss_pred HHHHcCCHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568 366 AVIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 444 (532)
Q Consensus 366 ~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~ 444 (532)
+|..+.+|... ++.||.-|+.||+-.|.+..... ++..|-.+.+++..-|+..|+-++.-|+..
T Consensus 590 -------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q 654 (929)
T KOG2062|consen 590 -------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMIQ 654 (929)
T ss_pred -------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHHh
Confidence 36666777654 89999999999998887643222 233333445566677999999998888754
Q ss_pred hhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009568 445 GEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILET 495 (532)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~ 495 (532)
.... .++-...| ...++++..+.+++.-.+--.+|.+
T Consensus 655 ~t~~---------~~pkv~~f-----rk~l~kvI~dKhEd~~aK~GAilAq 691 (929)
T KOG2062|consen 655 QTEQ---------LCPKVNGF-----RKQLEKVINDKHEDGMAKFGAILAQ 691 (929)
T ss_pred cccc---------cCchHHHH-----HHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 3321 22223333 3567788888888877666556554
No 148
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.32 E-value=0.012 Score=51.35 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=74.4
Q ss_pred CccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH
Q 009568 299 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 378 (532)
Q Consensus 299 ~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ 378 (532)
++.+|..++.++|-++...+...+ ..++.+...|.++ ++.||+.|+.+|..+...+.-.. +..++..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIKV----KGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHH
Confidence 356889999999999987664433 5688999999999 99999999999999986432211 2224477778
Q ss_pred HHhcCchhHHHHHHHHHHHhhcC
Q 009568 379 LLQNAEFDIKKEAAWAISNATSG 401 (532)
Q Consensus 379 ll~~~~~~v~~~a~~aL~nl~~~ 401 (532)
++.+++++|+..|..++..+...
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHh
Confidence 88889999999999999999886
No 149
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0076 Score=59.63 Aligned_cols=155 Identities=18% Similarity=0.209 Sum_probs=110.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHh-hCCCCccchhhHHHHHHHhhcCCcchhHHHhh
Q 009568 248 ALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT 326 (532)
Q Consensus 248 ~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~ 326 (532)
.+.+++.+.|+-++.....+++---.+.. ..+++..+++. .++.+.+++..|+-+||-+|..+.
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~-------- 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR-------- 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc--------
Confidence 56677777788787777666543222211 12677888888 677899999999999998887544
Q ss_pred cCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHH
Q 009568 327 YGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQ 406 (532)
Q Consensus 327 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~ 406 (532)
..++..+.+|..++++.||...+.+|+-.|+++..+. .+..|-.++.+...-||+.|+.+++-+...++++.
T Consensus 585 -~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 585 -DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred -chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 4567788888777799999999999999998755533 34456666777788899999999999988766543
Q ss_pred HHHHHHcCChHHHHhhcCCCC
Q 009568 407 IKYLVREGCIKPLCDLFVCPD 427 (532)
Q Consensus 407 ~~~l~~~~~l~~L~~lL~~~d 427 (532)
.... .++++.+..++..+.
T Consensus 657 np~v--~~I~k~f~~vI~~Kh 675 (926)
T COG5116 657 NPNV--KRIIKKFNRVIVDKH 675 (926)
T ss_pred ChhH--HHHHHHHHHHHhhhh
Confidence 3332 235556666555443
No 150
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.30 E-value=0.011 Score=61.12 Aligned_cols=223 Identities=15% Similarity=0.108 Sum_probs=148.6
Q ss_pred chhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCC-CHHHHHHHHHHHHH
Q 009568 192 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN-DEEVLTDACWALSY 270 (532)
Q Consensus 192 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~ 270 (532)
...|...++.|+...|+++. ....+........+|.. .-..........++.+...++.. ...-...++.++.|
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~----~i~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altn 568 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAG----KIDFPGERSYEVVKPLDSALHNDEKGLENFEALEALTN 568 (748)
T ss_pred HHhcCccccccHHHHHHHHH-HHhchHHHHHHHHHHhh----hcCCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhc
Confidence 33455677888999999998 55555666666666661 11111112234444554444432 22235567888999
Q ss_pred hccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhh-cCchHHHHHHhcCCCchhHHHHH
Q 009568 271 LSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT-YGALPYLLGLLTHSHKKSIKKEA 349 (532)
Q Consensus 271 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a 349 (532)
|+..+....+.+++...++.+-.++...++..+..++..+.||..++.-....+.+ ...++.....+... +......+
T Consensus 569 Las~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~ 647 (748)
T KOG4151|consen 569 LASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAG 647 (748)
T ss_pred ccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhc
Confidence 98776666667888888888888888999999999999999999887755556666 34556666666554 77777788
Q ss_pred HHHHHHHhcCCHHHHHH-HHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHh
Q 009568 350 CWTISNITAGNRDQIQA-VIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCD 421 (532)
Q Consensus 350 ~~~L~nl~~~~~~~~~~-l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ 421 (532)
+.++.-|+.-...++.. .--......+..++.+.++.++...+..+.|+.. ...+....+.....+..+..
T Consensus 648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~-~~~ei~~~~~~~~~~~~l~~ 719 (748)
T KOG4151|consen 648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE-ALFEIAEKIFETEVMELLSG 719 (748)
T ss_pred cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH-HHHHHHHHhccchHHHHHHH
Confidence 88777676644444442 2234567888899999999999999999999443 34455555554444444443
No 151
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.30 E-value=0.0007 Score=42.82 Aligned_cols=38 Identities=50% Similarity=0.733 Sum_probs=34.5
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009568 362 DQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT 399 (532)
Q Consensus 362 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 399 (532)
+....+++.|+++.|+.++.++++++++.|+|+|.|++
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 45667889999999999999889999999999999986
No 152
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.29 E-value=0.0085 Score=52.38 Aligned_cols=96 Identities=22% Similarity=0.222 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHH
Q 009568 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL 336 (532)
Q Consensus 257 d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l 336 (532)
++.++..++.+++.++...+...+ ..++.+...|.++++.+|..|+.+|..|....-.. ++..++..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHH
Confidence 578999999999999977665443 67889999999999999999999999998753311 222344778888
Q ss_pred hcCCCchhHHHHHHHHHHHHhcC-CHH
Q 009568 337 LTHSHKKSIKKEACWTISNITAG-NRD 362 (532)
Q Consensus 337 L~~~~~~~v~~~a~~~L~nl~~~-~~~ 362 (532)
+.++ ++.|+..|..++..+... .+.
T Consensus 72 l~D~-~~~Ir~~A~~~~~e~~~~~~~~ 97 (178)
T PF12717_consen 72 LVDE-NPEIRSLARSFFSELLKKRNPN 97 (178)
T ss_pred HcCC-CHHHHHHHHHHHHHHHHhccch
Confidence 8888 999999999999999874 444
No 153
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.28 E-value=0.026 Score=54.24 Aligned_cols=206 Identities=11% Similarity=0.066 Sum_probs=144.3
Q ss_pred HHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcch-----hHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHH
Q 009568 280 QAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ-----TQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS 354 (532)
Q Consensus 280 ~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~-----~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 354 (532)
+.+...+++..|+..|..-+.+.+..+..+.+++....... .+++.. ..-..+..++..-.++++--.+...|.
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlR 148 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLR 148 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHH
Confidence 45667799999999999988899999999999998765432 223333 222333333332224556666666666
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc---CChHHHHhhcCCCCHHHH
Q 009568 355 NITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE---GCIKPLCDLFVCPDPRIV 431 (532)
Q Consensus 355 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~---~~l~~L~~lL~~~d~~v~ 431 (532)
.++.. +...+.++....+..+++.++.++.++...|..++..+..... .....++.. .....+..+|.+++.-++
T Consensus 149 ec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk-~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 149 ECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHK-KLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSH-HHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 66654 6667778888888899999999999999999999999877643 333333332 446788889999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009568 432 TVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 498 (532)
Q Consensus 432 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 498 (532)
..++..|..++-...... -....+.+..-+..+..|..+++..|+-.|..+..-|..
T Consensus 227 rqslkLL~ellldr~n~~----------vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFN----------VMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHHHHHHHSGGGHH----------HHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHchhHHH----------HHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHh
Confidence 999999999997654422 234556666778888899999999999999998876643
No 154
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.27 E-value=0.0092 Score=57.25 Aligned_cols=202 Identities=13% Similarity=0.092 Sum_probs=142.6
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh-----HHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhh
Q 009568 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC-----RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN 229 (532)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-----~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~ 229 (532)
.+...+.+..|+..|..-+-+.+..++.+..++....... .+.+.. ..-..+..++....++++.-.+...|..
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHHH
Confidence 4556688899999998888999999999999988654333 223332 2233344444445577777777777777
Q ss_pred ccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHh---CchHHHHHhhCCCCccchhhH
Q 009568 230 FCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLGHPSPSVLIPA 306 (532)
Q Consensus 230 L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~v~~~a 306 (532)
.++.............+..+...+..++=++..+|..++..+...+.......+.. .++.....+|.+++..++..+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 77764333333335556667778888899999999999999877766666666655 367788889999999999999
Q ss_pred HHHHHHhhcCCcch---hHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568 307 LRTVGNIVTGDDFQ---TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (532)
Q Consensus 307 l~~L~nl~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 358 (532)
+..||.|....... ++++-+..-+..++.+|++. +..++-+|..++--+.+
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHh
Confidence 99999998754421 23444556789999999998 99999999999888776
No 155
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.23 E-value=0.016 Score=62.41 Aligned_cols=161 Identities=23% Similarity=0.243 Sum_probs=123.7
Q ss_pred CcHHHHHHhhcCC---CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCc
Q 009568 117 GVVPRFVEFLMRE---DYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSP 192 (532)
Q Consensus 117 g~i~~Lv~lL~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~ 192 (532)
.+.|.+++..+.+ ++|++|..|.-+|+.+..-+.+.+..- +|.|+..+. ++++.+|.+++-+++-++..-|
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~-----l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESH-----LPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHH-----HHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 3678888888532 239999999999999988676665543 589999887 6899999999999999986555
Q ss_pred hhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 009568 193 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS 272 (532)
Q Consensus 193 ~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~ 272 (532)
..-+. .-+.|...| .+.++.+++.|+.+|++|...+ ...++|.++-+..+|.++++++..-|=..+..|+
T Consensus 994 nlie~-----~T~~Ly~rL-~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 994 NLIEP-----WTEHLYRRL-RDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred cccch-----hhHHHHHHh-cCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 43222 345566666 7889999999999999998763 5567899999999999999999887777777777
Q ss_pred cCChhHHHHHHHhCchHHHHHhhCCC
Q 009568 273 DGTNDKIQAVIEAGVCPRLVELLGHP 298 (532)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~L~~lL~~~ 298 (532)
...+.. + +++|.++..|+++
T Consensus 1064 ~k~n~i----y--nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1064 SKGNTI----Y--NLLPDILSRLSNG 1083 (1251)
T ss_pred hcccch----h--hhchHHHHhhccC
Confidence 554322 1 5677777777665
No 156
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.20 E-value=0.055 Score=54.68 Aligned_cols=204 Identities=15% Similarity=0.115 Sum_probs=129.4
Q ss_pred cCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCC-----CCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009568 84 WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-----DYPQLQFEAAWALTNIASGTSENTKVVID 158 (532)
Q Consensus 84 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~i~~ 158 (532)
.+.++.+..+|+++|.+++... ....+.+++.|..+.+++.|+.. + +++.+-..++|.-++...++.+..+++
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl~~RLLFLlTa~~~~~~~~L~~ 119 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFLDSRLLFLLTALRPDDRKKLIE 119 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHHHHHHHHHHhcCChhHHHHHHH
Confidence 3567889999999999999863 34456677999999999999876 4 799999999999999888888877776
Q ss_pred C-CChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhh------
Q 009568 159 H-GAVPIFVKLLAS-----------------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER------ 214 (532)
Q Consensus 159 ~-g~i~~L~~lL~~-----------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~------ 214 (532)
. +++..+...|.. .+......++.++.|+..+.+.... -.....++.++.++..-
T Consensus 120 e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~ 198 (446)
T PF10165_consen 120 EHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPS 198 (446)
T ss_pred HhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCC
Confidence 5 677777765531 1345566778888898766554322 11233455555554322
Q ss_pred --hhhHHHHHHHHHhhhccCCCC------------CCCcccccchHHHHHHhhc----CC----CHHHHHHHHHHHHHhc
Q 009568 215 --AKLSMLRNATWTLSNFCRGKP------------QPPFDQVRPALPALAQLVH----SN----DEEVLTDACWALSYLS 272 (532)
Q Consensus 215 --~~~~~~~~a~~~L~~L~~~~~------------~~~~~~~~~~l~~L~~lL~----~~----d~~v~~~a~~~L~~l~ 272 (532)
........++-+|.|+-.... ..........+..|+.+|. .. -.+.....+..|..++
T Consensus 199 ~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~ 278 (446)
T PF10165_consen 199 SPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLA 278 (446)
T ss_pred CCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHH
Confidence 234566777777777722110 0001111234445555543 21 2356777888888888
Q ss_pred cCChhHHHHHHHhCchHHH
Q 009568 273 DGTNDKIQAVIEAGVCPRL 291 (532)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~L 291 (532)
..+... ...+...++|..
T Consensus 279 ~~~~~~-Rk~lr~~lLP~~ 296 (446)
T PF10165_consen 279 RAAREV-RKYLRARLLPPD 296 (446)
T ss_pred HhcHHH-HHHHHHHhCCCh
Confidence 766443 444444444444
No 157
>PRK14707 hypothetical protein; Provisional
Probab=97.20 E-value=0.31 Score=56.22 Aligned_cols=355 Identities=17% Similarity=0.130 Sum_probs=204.2
Q ss_pred HHHHHHhhc-CCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-C-CHHHHHHHHHHHHHhhCCCchhH
Q 009568 119 VPRFVEFLM-REDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-P-SDDVREQAVWALGNVAGDSPRCR 195 (532)
Q Consensus 119 i~~Lv~lL~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~-~~~v~~~a~~~L~nl~~~~~~~~ 195 (532)
+-.+++-++ .+++.+.+..+......++.+ ...+..+ +...|..++..++. + ++..+..+...-..++.+ ...+
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~~-d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~ 241 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVASD-DRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLR 241 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcCC-hhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHH
Confidence 334444443 344477888777777777773 3444333 45567777777766 4 455554444444445444 4445
Q ss_pred HHHHhcCChHHHHHHhhhhhhhHHHHHHHHHh-hhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 009568 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTL-SNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG 274 (532)
Q Consensus 196 ~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L-~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~ 274 (532)
..+-..| +-..++.|.+-++......++.++ ..+..+........-..+-..|..+-+-+|..+-..+...|..-...
T Consensus 242 ~~~~~q~-va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~ 320 (2710)
T PRK14707 242 NELKPQE-LGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLAD 320 (2710)
T ss_pred HhCChHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc
Confidence 4444444 555566665666655555554444 45554422111111223333444444566777766666666543333
Q ss_pred ChhHHHHHHHhCchHHHHHhh-CCCCccchhhHHHH-HHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHH
Q 009568 275 TNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRT-VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWT 352 (532)
Q Consensus 275 ~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~al~~-L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 352 (532)
.++..+ -++...+...++-| +.++..+-..|... ...++. ++...+. ++...+..+++.|+.-.+..+...|+..
T Consensus 321 d~~l~~-~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~-d~~l~~~-l~~q~~a~~lNalsKWp~~~~c~~aa~~ 397 (2710)
T PRK14707 321 DPELCK-ALNARGLSTALNALSKWPDNPVCAAAVSALAERLVA-DPELRKD-LEPQGVSSVLNALSKWPDTPVCAAAASA 397 (2710)
T ss_pred cHhhhh-ccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhcc-CHhhhcc-cchhHHHHHHhhhhcCCCchHHHHHHHH
Confidence 343322 23333444444545 34554444444444 444543 4444433 3444555566666544366777777777
Q ss_pred HHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHH
Q 009568 353 ISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVT 432 (532)
Q Consensus 353 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~ 432 (532)
|..=..++++....+-..|+-..|-.+-+.++..+...++.+|.--... +.+.++.|--.++...|-.+-+.+|..+..
T Consensus 398 LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~-d~~l~~~~~p~~va~~LnalSKWPd~p~c~ 476 (2710)
T PRK14707 398 LAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAH-DTELCKALDPINVTQALDALSKWPDTPICG 476 (2710)
T ss_pred HHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhc-cHHHHhhcChHHHHHHHHHhhcCCCChhHH
Confidence 7765566677666655556655665566678889999999888877665 556665555556666666677789998888
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 009568 433 VCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE 494 (532)
Q Consensus 433 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~ 494 (532)
.+.+.|..=+..... .+..|.-.+....|..|...++......|..-|.
T Consensus 477 ~aa~~La~~l~~~~~-------------l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA 525 (2710)
T PRK14707 477 QTASALAARLAHERR-------------LRKALKPQEVVIALHSLSKWPDTPICAEAASALA 525 (2710)
T ss_pred HHHHHHHHHhcccHH-------------HHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence 777777665543322 3555666677788888888888777766644443
No 158
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.19 E-value=0.52 Score=52.73 Aligned_cols=229 Identities=15% Similarity=0.138 Sum_probs=126.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhh---CCC--------CccchhhHHHHHHHhhc
Q 009568 247 PALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL---GHP--------SPSVLIPALRTVGNIVT 315 (532)
Q Consensus 247 ~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL---~~~--------~~~v~~~al~~L~nl~~ 315 (532)
..|.+++-.........|..|++.++..-......+. .++..+...| ++. ........+.++|-++.
T Consensus 1124 e~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~--~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~R 1201 (1692)
T KOG1020|consen 1124 EDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVK--ACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSR 1201 (1692)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHH--HHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHH
Confidence 3444444444455566677777777642111111111 2223333333 222 22345667889999987
Q ss_pred CCcc-------h----hHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCc
Q 009568 316 GDDF-------Q----TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAE 384 (532)
Q Consensus 316 ~~~~-------~----~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 384 (532)
..+- . ....+..+++..|.-+.++. +..+|..|...|+.+|...+. .+.+..+...+...+.+..
T Consensus 1202 yfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~-~~~lR~~al~~Lg~~ci~hp~---l~~~~~v~nly~~ila~~n 1277 (1692)
T KOG1020|consen 1202 YFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDK-DGELRRKALINLGFICIQHPS---LFTSREVLNLYDEILADDN 1277 (1692)
T ss_pred hccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhCch---hhhhHHHHHHHHHHHhhhc
Confidence 3220 0 11134446677777777777 899999999999999986554 2333334444444554432
Q ss_pred hhH--HHHHHHHHHHhhcC---------------CCHHHHHHHHH-------cCC--------hHHHHhhcCCCCHHHHH
Q 009568 385 FDI--KKEAAWAISNATSG---------------GTHEQIKYLVR-------EGC--------IKPLCDLFVCPDPRIVT 432 (532)
Q Consensus 385 ~~v--~~~a~~aL~nl~~~---------------~~~~~~~~l~~-------~~~--------l~~L~~lL~~~d~~v~~ 432 (532)
... +..+...+.-+... ...+....+.. .|+ ++.+++..-+.|..++.
T Consensus 1278 ~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~ 1357 (1692)
T KOG1020|consen 1278 SDIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRL 1357 (1692)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHH
Confidence 222 22222222211110 01122222211 111 23333333357889999
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009568 433 VCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLE 499 (532)
Q Consensus 433 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 499 (532)
.|++.+..+++.| -++|.. .++.|..|-.++.+.+++.|..++..++..
T Consensus 1358 ~aikvl~liL~QG-----------LVhP~~-------cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~k 1406 (1692)
T KOG1020|consen 1358 VAIKVLKLILNQG-----------LVHPVH-------CVPTLIALETDPSQAIRHVADELLKEIDEK 1406 (1692)
T ss_pred HHHHHHHHHHHcc-----------CCCccc-------hhhhheeecCChHHHHHHHHHHHHHHHHHh
Confidence 9999999999876 333332 267888888999999999999988877653
No 159
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.16 E-value=0.0024 Score=66.55 Aligned_cols=190 Identities=19% Similarity=0.144 Sum_probs=130.0
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH--------HHHh----cCChHHHHHHhhhhhhhHHHHHHHHHhhh
Q 009568 162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD--------LVLS----QGALIPLLAQLNERAKLSMLRNATWTLSN 229 (532)
Q Consensus 162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~--------~~~~----~~~l~~L~~ll~~~~~~~~~~~a~~~L~~ 229 (532)
-..|+.+|+. +++-..+..++.-+..|++..+. .+.. ..++|.+++.+ ...+...+.+...+|++
T Consensus 817 a~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~-~t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 817 AEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKF-ETAPGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHh-ccCCccchhHHHHHHHH
Confidence 3556666654 44555566666666666543321 1111 34677777777 35556677778888888
Q ss_pred ccCCCCCCC-cccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCC---ccchhh
Q 009568 230 FCRGKPQPP-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS---PSVLIP 305 (532)
Q Consensus 230 L~~~~~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~---~~v~~~ 305 (532)
...+-|... ......++|.|++.|.-+|..++..++.++.-+....+.....-++ .++|.++.+=.+++ ..+|..
T Consensus 894 Vl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ 972 (1030)
T KOG1967|consen 894 VLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVRED 972 (1030)
T ss_pred HHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHH
Confidence 877544322 2234678888889999999999999999998877655544332232 56777777766654 578999
Q ss_pred HHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHH
Q 009568 306 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI 356 (532)
Q Consensus 306 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 356 (532)
|+.+|+.|.+..+...-......++..|.+.|.++ ..-||++|..+=.+.
T Consensus 973 ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 973 ALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQNW 1022 (1030)
T ss_pred HHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhhh
Confidence 99999999986664443445557888999999988 888999998775554
No 160
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.15 E-value=0.0099 Score=63.92 Aligned_cols=146 Identities=17% Similarity=0.177 Sum_probs=114.7
Q ss_pred ccchHHHHHHhhc----CCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhC-CCCccchhhHHHHHHHhhcC
Q 009568 242 VRPALPALAQLVH----SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVTG 316 (532)
Q Consensus 242 ~~~~l~~L~~lL~----~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~ 316 (532)
...+.|.++...+ .+||+++..|.-+|+.+..-+..... .-+|.|+..|. ++++.+|..++-++|-++-.
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhh
Confidence 3456677777774 45899999999999998765544333 56788999997 78999999999999999877
Q ss_pred CcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHH
Q 009568 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAIS 396 (532)
Q Consensus 317 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 396 (532)
.+...+ -.-+.|...|.+. ++.||+.|..+|++|...+. +--.|.++.+..++.+++..++.-|-..+.
T Consensus 992 fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILndm-----iKVKGql~eMA~cl~D~~~~IsdlAk~FF~ 1060 (1251)
T KOG0414|consen 992 FPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILNDM-----IKVKGQLSEMALCLEDPNAEISDLAKSFFK 1060 (1251)
T ss_pred cccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhh-----hHhcccHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 664333 3456788889988 99999999999999986432 223688999999999999999998887777
Q ss_pred HhhcCCC
Q 009568 397 NATSGGT 403 (532)
Q Consensus 397 nl~~~~~ 403 (532)
.+...++
T Consensus 1061 Els~k~n 1067 (1251)
T KOG0414|consen 1061 ELSSKGN 1067 (1251)
T ss_pred Hhhhccc
Confidence 7776653
No 161
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.15 E-value=0.032 Score=56.75 Aligned_cols=296 Identities=12% Similarity=0.084 Sum_probs=148.6
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH
Q 009568 120 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVL 199 (532)
Q Consensus 120 ~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 199 (532)
..++...+ ++ +..+.-|+..+......-|+..+.. +..++.+..+.+..||.+|+..|..+|.+++.....
T Consensus 26 ~~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-- 96 (556)
T PF05918_consen 26 KEILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-- 96 (556)
T ss_dssp HHHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH--
T ss_pred HHHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH--
Confidence 33445444 34 7889999999999888777766544 588999999999999999999999999987765444
Q ss_pred hcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc---CCCHHHHHHHHHHHHHhc-cCC
Q 009568 200 SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH---SNDEEVLTDACWALSYLS-DGT 275 (532)
Q Consensus 200 ~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~l~-~~~ 275 (532)
+...|+++| ++.++.-...+-++|..|...++ .+.+..+...+. ..|+.+++.++..|..-. .-.
T Consensus 97 ---vaDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 97 ---VADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp ---HHHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred ---HHHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence 366788888 66666666666667766665432 455555555554 568889999888775322 111
Q ss_pred hhHHH--HHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcC----CcchhHHHhhcCchHHHHHHh------cCCCch
Q 009568 276 NDKIQ--AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG----DDFQTQCIITYGALPYLLGLL------THSHKK 343 (532)
Q Consensus 276 ~~~~~--~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~----~~~~~~~~~~~~~l~~L~~lL------~~~~~~ 343 (532)
.+... .=.+.-++..+...|.+-...--...+.+|..+-.. +....+. +++.+.... ..+ ++
T Consensus 166 ~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qe-----Lv~ii~eQa~Ld~~f~~s-D~ 239 (556)
T PF05918_consen 166 PELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQE-----LVDIIEEQADLDQPFDPS-DP 239 (556)
T ss_dssp TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHH-----HHHHHHHHHTTTS---SS-SH
T ss_pred HHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHH-----HHHHHHHHhccCCCCCCc-CH
Confidence 11111 112223444555666542222222333444444331 1222222 233333222 222 33
Q ss_pred hHHHHHHHHHHH----Hhc--CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChH
Q 009568 344 SIKKEACWTISN----ITA--GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIK 417 (532)
Q Consensus 344 ~v~~~a~~~L~n----l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~ 417 (532)
+.......|+.. ++. .+...+.++.+. ++|.+-.+ ....+...+.++..++..........++. -++.
T Consensus 240 e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~k-vlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L~-~i~~ 313 (556)
T PF05918_consen 240 ESIDRLISCLRQALPFFSRGVSSSKFVNYMCEK-VLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLLP-SIFQ 313 (556)
T ss_dssp HHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHH-TCCCTT---------HHHHHHHHHHHHHTT----THHHHHH-HHHH
T ss_pred HHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHH-hcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHHH-HHHH
Confidence 333333333332 122 234444444443 66755554 44677788889988887665332333221 1223
Q ss_pred HHHhhcCC--CCH----HHHHHHHHHHHHHHHhhhh
Q 009568 418 PLCDLFVC--PDP----RIVTVCLEGLENILKVGEA 447 (532)
Q Consensus 418 ~L~~lL~~--~d~----~v~~~al~~L~~l~~~~~~ 447 (532)
.|..++-. ..+ ..++..+.++..+....+.
T Consensus 314 ~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~ 349 (556)
T PF05918_consen 314 LLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN 349 (556)
T ss_dssp HHHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred HHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence 33333322 223 3566667777777665443
No 162
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.036 Score=59.96 Aligned_cols=243 Identities=12% Similarity=0.095 Sum_probs=145.3
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hhHHHH
Q 009568 122 FVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID--HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP-RCRDLV 198 (532)
Q Consensus 122 Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~ 198 (532)
+.....+.++..+|..+..+|..++.. +.......+ ..+...|..-+++.....+...+.+|..|....+ ...+.+
T Consensus 658 v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 658 VDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred hhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 334444443489999999999999985 222111111 1233455555555566677777777777764333 222222
Q ss_pred HhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC--C---C-CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 009568 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR--G---K-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS 272 (532)
Q Consensus 199 ~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~--~---~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~ 272 (532)
.. .++-++-.+ +..+...++++..+|..++. . . ..+....+...++.+...+-.+...+....+-++..+.
T Consensus 737 ~k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il 813 (1176)
T KOG1248|consen 737 PK--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL 813 (1176)
T ss_pred HH--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 22 233333333 66678888888888888872 1 1 22223445556666555544333444433355555554
Q ss_pred cCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHH
Q 009568 273 DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWT 352 (532)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 352 (532)
.........-.-.+++..+..+|.+.++.++..|+..+..++...++..-.-....+++.+..+++.. ...+|..+-..
T Consensus 814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L 892 (1176)
T KOG1248|consen 814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL 892 (1176)
T ss_pred HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence 32222222222235677777888999999999999999999988775433333335788888888777 88888888888
Q ss_pred HHHHhc-CCHHHHHHHHH
Q 009568 353 ISNITA-GNRDQIQAVID 369 (532)
Q Consensus 353 L~nl~~-~~~~~~~~l~~ 369 (532)
|-.++. ...+.++.++.
T Consensus 893 lekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 893 LEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHhCHHHHHhhCH
Confidence 888876 34455555543
No 163
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.11 E-value=0.0033 Score=48.28 Aligned_cols=68 Identities=18% Similarity=0.308 Sum_probs=56.5
Q ss_pred chhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhc-CCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009568 302 VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT-HSHKKSIKKEACWTISNITAGNRDQIQAVID 369 (532)
Q Consensus 302 v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 369 (532)
++...+++|+|++..+....+.+.+.|++|.++..-. +..+|.+|..|.|++.|++.++++....+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4567889999999999988888999999999988763 2337999999999999999999887655443
No 164
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=97.02 E-value=0.051 Score=55.71 Aligned_cols=193 Identities=12% Similarity=0.146 Sum_probs=140.0
Q ss_pred cccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcch
Q 009568 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 320 (532)
Q Consensus 241 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~ 320 (532)
+...++|.|++++...|..++...+.-+-.....- .+.+++..++|.+..-+.+.++.++...+.++..|+..-.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~L---t~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~-- 401 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHL---TKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS-- 401 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhc---CHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc--
Confidence 55789999999999999999987776665554332 2456778999999999999999999999999999885332
Q ss_pred hHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC-HHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009568 321 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGL-VGPLVNLLQNAEFDIKKEAAWAISNAT 399 (532)
Q Consensus 321 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~-i~~L~~ll~~~~~~v~~~a~~aL~nl~ 399 (532)
...+...++..+..+-.+. +..+|-...-||+.++...... ...++ ...+.+.+.+.-..-|..+.+++....
T Consensus 402 -~~~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~----~R~~vL~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 402 -KRNLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAAS----VRKRVLASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred -hhhhcHHHHHHHHhhCccc-cCcccccceeeecccccccchh----hhccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 2244445556666555544 7889999888998887642221 12333 445555677677788888888887665
Q ss_pred cCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 009568 400 SGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAE 448 (532)
Q Consensus 400 ~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~ 448 (532)
..-.... +...+++.++-+.-+++..++..+..++...+...++.
T Consensus 476 ~~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 476 EYFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred cccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence 5332211 23468889998888999999999999888888766554
No 165
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.99 E-value=0.036 Score=46.34 Aligned_cols=129 Identities=15% Similarity=0.100 Sum_probs=99.6
Q ss_pred HHHHHhCchHHHHHhhCCCC------ccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCC-chhHHHHHHHH
Q 009568 280 QAVIEAGVCPRLVELLGHPS------PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWT 352 (532)
Q Consensus 280 ~~~~~~~~l~~L~~lL~~~~------~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~ 352 (532)
..++..+++..|+.++.++. ..+...++.++..|..+.- .....+...++..+...+..+. +..+...|...
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 45677789999999997755 3667778888888887543 2334566677888888887653 57899999999
Q ss_pred HHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHH
Q 009568 353 ISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKY 409 (532)
Q Consensus 353 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 409 (532)
|-+++..++.....+-+.=-++.|+..|+..+++++.+|...+..+...++...++.
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~ 140 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKE 140 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 999998777755555555459999999999999999999999998888776655544
No 166
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.97 E-value=0.13 Score=49.17 Aligned_cols=195 Identities=13% Similarity=0.118 Sum_probs=124.0
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCCh--hHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcC--CcchhHH
Q 009568 248 ALAQLVHSNDEEVLTDACWALSYLSDGTN--DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG--DDFQTQC 323 (532)
Q Consensus 248 ~L~~lL~~~d~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~--~~~~~~~ 323 (532)
-.+..+.......+..++..+..+..... +.+.. ....++..+...++.+...-+..|+++++-++-. .......
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~-~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVED-RRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 34445555668899999999988764322 22111 1224677788888777666667777887777644 2234445
Q ss_pred HhhcCchHHHHHHhcCCC-chhHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHH--Hhc----------CchhH
Q 009568 324 IITYGALPYLLGLLTHSH-KKSIKKEACWTISNITA---GNRDQIQAVIDAGLVGPLVNL--LQN----------AEFDI 387 (532)
Q Consensus 324 ~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~l--l~~----------~~~~v 387 (532)
+++ .+.|.|..++.+.. .+.+|..++.+|+-++. ..++.+...++ .+..+... .+. +++.+
T Consensus 126 i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l 202 (309)
T PF05004_consen 126 IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAAL 202 (309)
T ss_pred HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHH
Confidence 555 67888999887652 34566667667776543 34444432222 22222111 111 13468
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 009568 388 KKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA 447 (532)
Q Consensus 388 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 447 (532)
...|+.+.+-++...+...+....+ ..++.|..+|++.|.+|+..|-++|.-++..+..
T Consensus 203 ~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 203 VAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 8888887777776655544444333 4689999999999999999999999999887664
No 167
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.31 Score=50.66 Aligned_cols=285 Identities=15% Similarity=0.147 Sum_probs=146.7
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCccc
Q 009568 162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ 241 (532)
Q Consensus 162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~ 241 (532)
.+.+-..+.+....+.-.++.++.++....+ |...- .+..|--++ .++...++-.+..+|..++...|....
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~--r~l~p---avs~Lq~fl-ssp~~~lRfaAvRtLnkvAm~~P~~v~-- 318 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNS--RELAP---AVSVLQLFL-SSPKVALRFAAVRTLNKVAMKHPQAVT-- 318 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCH--hhcch---HHHHHHHHh-cCcHHHHHHHHHHHHHHHHHhCCcccc--
Confidence 3555556666778888888888888865443 22221 233333333 777888899999999998877543222
Q ss_pred ccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchh
Q 009568 242 VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT 321 (532)
Q Consensus 242 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~ 321 (532)
-+-.-|-.++.+.+-.+-..|..++..- +....+..+.+ -++.++.=+++...-+...|+++|++. .+.
T Consensus 319 --~cN~elE~lItd~NrsIat~AITtLLKT--G~e~sv~rLm~--qI~~fv~disDeFKivvvdai~sLc~~---fp~-- 387 (865)
T KOG1078|consen 319 --VCNLDLESLITDSNRSIATLAITTLLKT--GTESSVDRLMK--QISSFVSDISDEFKIVVVDAIRSLCLK---FPR-- 387 (865)
T ss_pred --ccchhHHhhhcccccchhHHHHHHHHHh--cchhHHHHHHH--HHHHHHHhccccceEEeHHHHHHHHhh---ccH--
Confidence 1222344455555555555555444332 22333332221 122333333333334444444444433 331
Q ss_pred HHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009568 322 QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG 401 (532)
Q Consensus 322 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 401 (532)
...+.+..|..+|.....-+.++....++..+...+++.... .+..|+.++.+. +...-+...|.-+...
T Consensus 388 ---k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDc--e~~~i~~rILhlLG~E 457 (865)
T KOG1078|consen 388 ---KHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDC--EFTQIAVRILHLLGKE 457 (865)
T ss_pred ---HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhc--cchHHHHHHHHHHhcc
Confidence 123556777788766535577778888888877765554432 344566655543 2223333344333322
Q ss_pred CCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCC
Q 009568 402 GTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHD 481 (532)
Q Consensus 402 ~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~ 481 (532)
+.... .....+..+...+--.+..++..++.+|.++....+... ....-.+.....+.
T Consensus 458 gP~a~----~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~------------------~sI~vllkRc~~D~ 515 (865)
T KOG1078|consen 458 GPKAP----NPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLL------------------PSILVLLKRCLNDS 515 (865)
T ss_pred CCCCC----CcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCcc------------------ccHHHHHHHHhcCc
Confidence 21000 001123333344444566666667777766651111110 11234556666777
Q ss_pred CHHHHHHHHHHHHHhC
Q 009568 482 NNEIYEKAVKILETYW 497 (532)
Q Consensus 482 ~~~v~~~a~~il~~~~ 497 (532)
+.+|+++|...+...-
T Consensus 516 DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 516 DDEVRDRATFYLKNLE 531 (865)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 7777777766665543
No 168
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.91 E-value=0.025 Score=54.06 Aligned_cols=192 Identities=20% Similarity=0.234 Sum_probs=123.4
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhh--hCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC--Ch
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVI--QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG--TS 150 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i--~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~--~~ 150 (532)
.|...+..+.......|..|+..+.+++... ...+.+- ...++..+.+.++.+. .+-+..|+.+++-++-. ..
T Consensus 44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~--~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g 120 (309)
T PF05004_consen 44 KLKEAIDLLTEKSSSTREAALEALIRALSSR--YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAG 120 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCC
Confidence 3677888888777899999999999999753 2222222 2347788888898887 56667777777666542 22
Q ss_pred hhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhh---CCCchhHHHHHhcCChHHHHHH--hhh---------h
Q 009568 151 ENTKVVIDHGAVPIFVKLLASP--SDDVREQAVWALGNVA---GDSPRCRDLVLSQGALIPLLAQ--LNE---------R 214 (532)
Q Consensus 151 ~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~---~~~~~~~~~~~~~~~l~~L~~l--l~~---------~ 214 (532)
.....+++ .+.|.|...+.+. ...+|..|+.+|+-++ +..+......++ .+..+... ... .
T Consensus 121 ~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 121 EDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAE 197 (309)
T ss_pred ccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCC
Confidence 33444443 4568888888763 4667777777777664 222222111111 23322221 111 1
Q ss_pred hhhHHHHHHHHHhhhccCCCCCCCc-ccccchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 009568 215 AKLSMLRNATWTLSNFCRGKPQPPF-DQVRPALPALAQLVHSNDEEVLTDACWALSYLS 272 (532)
Q Consensus 215 ~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~ 272 (532)
+++.+...|+.+++-|...-+.... ......+|.|..+|.++|.+|+..|..+|.-+.
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 2356888888777777765443212 334678999999999999999999999887664
No 169
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.89 E-value=0.079 Score=48.08 Aligned_cols=184 Identities=13% Similarity=0.174 Sum_probs=117.0
Q ss_pred CHHHHHHHHHHHHHhccCChhHHHHHHHh-CchHHHHH-------hhCCCCc-----cchhhHHHHHHHhhcCCcchhHH
Q 009568 257 DEEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVE-------LLGHPSP-----SVLIPALRTVGNIVTGDDFQTQC 323 (532)
Q Consensus 257 d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~-------lL~~~~~-----~v~~~al~~L~nl~~~~~~~~~~ 323 (532)
+++.++.|+.-|+.--+..++..-.+..+ |.+..|++ .+..+.- .-...|+..+..++.+ ++.+..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHHHH
Confidence 56778888877776655555543333332 54444433 2333221 2234466666677774 446678
Q ss_pred HhhcCchHHHHHHhcCCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009568 324 IITYGALPYLLGLLTHSH----KKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA 398 (532)
Q Consensus 324 ~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 398 (532)
++++++.-.|...|+... -+.+|-.+.++++.+.. ++++.+..+++.+++|..++.|+.++.-.+..|...+..+
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 899999888888886541 25688899999999987 6788889999999999999999999988999999999998
Q ss_pred hcCCCHHHHHHHHHc--------CChHHHHh-hcCCCCHHHHHHHHHHHHHHHH
Q 009568 399 TSGGTHEQIKYLVRE--------GCIKPLCD-LFVCPDPRIVTVCLEGLENILK 443 (532)
Q Consensus 399 ~~~~~~~~~~~l~~~--------~~l~~L~~-lL~~~d~~v~~~al~~L~~l~~ 443 (532)
... .....++++. .++..++. +.+.+++.+.+.++.|...+..
T Consensus 167 L~d--d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd 218 (262)
T PF04078_consen 167 LLD--DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD 218 (262)
T ss_dssp HHS--HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT
T ss_pred Hcc--hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc
Confidence 873 3444443321 12333332 3345677777777777666654
No 170
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.88 E-value=0.0062 Score=63.66 Aligned_cols=157 Identities=17% Similarity=0.185 Sum_probs=112.7
Q ss_pred ccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchh
Q 009568 242 VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT 321 (532)
Q Consensus 242 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~ 321 (532)
...++|.++..+.+.+...+..-+.+|.+...+-+...-.---..++|.|++.|+-++..++..++.++.-+....+...
T Consensus 865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 36788999999987777888888888888877655421111122578888888999999999999999998887655433
Q ss_pred HHHhhcCchHHHHHHhcCCCc--hhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009568 322 QCIITYGALPYLLGLLTHSHK--KSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT 399 (532)
Q Consensus 322 ~~~~~~~~l~~L~~lL~~~~~--~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 399 (532)
..-++ .++|.++.+-.+..+ ..||..|..+|..++...|...-.-....++..|...|+++..-||++|..+=.+..
T Consensus 945 t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 945 TEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred hHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence 32222 567777777766622 578999999999999833332222233447788888888888889999988765543
No 171
>PRK14707 hypothetical protein; Provisional
Probab=96.87 E-value=1.4 Score=51.19 Aligned_cols=402 Identities=16% Similarity=0.109 Sum_probs=212.0
Q ss_pred HHHHHhhhc--CCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568 76 LPAMVAGVW--SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (532)
Q Consensus 76 l~~lv~~L~--s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 153 (532)
+.-+++..+ .++...+ .++..|...+..+ ....+.+-..|+...|-.+-+-+++++.+..+...-..++. .+..+
T Consensus 165 ~~lllNafSKw~~~~~c~-~aa~~la~~~~~~-d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l~ 241 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQ-AVAPRFAALVASD-DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRLR 241 (2710)
T ss_pred HHHHHHHhhcCCCCchHH-HHHHHHHHHhcCC-hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHHH
Confidence 344555444 2344444 4444554444432 23333343333333333344456656766655555455555 44433
Q ss_pred HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhh-hcc
Q 009568 154 KVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS-NFC 231 (532)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~-~L~ 231 (532)
. -++...+...+..|+. ++...-..++.+|..=..+.+..+..+-..+ +...++-|.+-.+..+.+.+...|. .|.
T Consensus 242 ~-~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~-vanalNalSKwpd~~vc~~Aa~~la~rl~ 319 (2710)
T PRK14707 242 N-ELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPIN-VTQALNALSKWADLPVCAEAAIALAERLA 319 (2710)
T ss_pred H-hCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHH-HHHHHhhhhcCCCchHHHHHHHHHHHHHh
Confidence 3 3344456666666666 5554555555544433334455555443333 4444555556667777666665554 444
Q ss_pred CCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhh-CCCCccchhhHHHHH
Q 009568 232 RGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTV 310 (532)
Q Consensus 232 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~al~~L 310 (532)
.+..........++-..|..+-+-+|..+-..+..+|..-...+++..+.+ +...+..+++-| +.++...-..+...|
T Consensus 320 ~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l-~~q~~a~~lNalsKWp~~~~c~~aa~~L 398 (2710)
T PRK14707 320 DDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDL-EPQGVSSVLNALSKWPDTPVCAAAASAL 398 (2710)
T ss_pred ccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhccc-chhHHHHHHhhhhcCCCchHHHHHHHHH
Confidence 432212222222333344444445666666666666654443444443333 333444444544 446655555555555
Q ss_pred HHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHH
Q 009568 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKE 390 (532)
Q Consensus 311 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 390 (532)
..=..++.+..+. ++...+..+++.|+.-.+..+...++..|.--..++.+..+.+--.++...|-.+-+.+|..+...
T Consensus 399 A~~l~~d~~l~~~-~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~ 477 (2710)
T PRK14707 399 AEHVVDDLELRKG-LDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQ 477 (2710)
T ss_pred HHHhccChhhhhh-cchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHH
Confidence 5544455545443 444555555555554336677777777777666666665544443444445544555678788888
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhcc
Q 009568 391 AAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEG 470 (532)
Q Consensus 391 a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 470 (532)
|+.+|..-... +++..+.|--.++...|-.+-+.+|......++..|..=+-... .....|...+.
T Consensus 478 aa~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~-------------~l~~~~~~~~~ 543 (2710)
T PRK14707 478 TASALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDEL-------------QLRKAFDAHQV 543 (2710)
T ss_pred HHHHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccch-------------hhhhhhhhHHH
Confidence 88887765554 44455555445566667666677776644444333322221111 12344444555
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009568 471 LEKIENLQSHDNNEIYEKAVKILETYWL 498 (532)
Q Consensus 471 ~~~l~~L~~~~~~~v~~~a~~il~~~~~ 498 (532)
...+..|..+++.+....|..-|...+-
T Consensus 544 ~~~lnalSKwp~s~~C~~A~~~iA~~l~ 571 (2710)
T PRK14707 544 VNTLKALSKWPDKQLCAVAASGLAERLA 571 (2710)
T ss_pred HHHHHhhhcCCchhHHHHHHHHHHHHhh
Confidence 6677888888888877777766666554
No 172
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.041 Score=57.42 Aligned_cols=219 Identities=10% Similarity=0.058 Sum_probs=138.7
Q ss_pred hhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHH
Q 009568 213 ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 292 (532)
Q Consensus 213 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 292 (532)
.++.+.++..++..|..+.+...........+++......+.+.|+-+--.|+..+..+|+-.+ ..++|.+.
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e~il~dL~ 808 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------EDILPDLS 808 (982)
T ss_pred cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------hhhHHHHH
Confidence 4455678889999999999876555566668899999999999999999999998888875533 35677777
Q ss_pred Hhh-CCC---CccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009568 293 ELL-GHP---SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI 368 (532)
Q Consensus 293 ~lL-~~~---~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 368 (532)
..- +.. ..+.+...-.++++++..-.+......+ -++..++..+.++ +...|..++..++++|.-..-.....+
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a~~vsd~~ 886 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP-DHEFRASSLANLGQLCQLLAFQVSDFF 886 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence 743 222 1233444446666666543333222222 4566777777877 888899999999999874332222222
Q ss_pred HcCCHHHHHHHHhc-CchhHHHHHHHHHHHhhcCCCHHHHHHH--HHcCChHHHHhhcCC-CCHHHHHHHHHHHHHHH
Q 009568 369 DAGLVGPLVNLLQN-AEFDIKKEAAWAISNATSGGTHEQIKYL--VREGCIKPLCDLFVC-PDPRIVTVCLEGLENIL 442 (532)
Q Consensus 369 ~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l--~~~~~l~~L~~lL~~-~d~~v~~~al~~L~~l~ 442 (532)
. .++..++.+... +.+-+|+.|+..+..+..+-..+..+.+ .-.+....+..+... +|..++..+..++..+-
T Consensus 887 ~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 887 H-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred H-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 1 244555555544 4788999999999999886554444432 122344444444443 33444444544544443
No 173
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.81 E-value=0.023 Score=58.83 Aligned_cols=212 Identities=15% Similarity=0.081 Sum_probs=139.5
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 153 (532)
+....++.+..-+.+...+.+..+|..-........ ..+++.+.+.+.......-..+++.+++|+++.+...+
T Consensus 504 ~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r 577 (748)
T KOG4151|consen 504 GGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDEKGLENFEALEALTNLASISESDR 577 (748)
T ss_pred cHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhH
Confidence 455666666666666667777777662222111111 23566666666654323446788999999999888888
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcC-ChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG-ALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (532)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~-~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~ 232 (532)
..++..-.++.+-.++...++.++..++..+.||.....-+...+.+.. .++.....+ ...+......++.++..+..
T Consensus 578 ~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~-e~~~E~~~lA~a~a~a~I~s 656 (748)
T KOG4151|consen 578 QKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNL-EVADEKFELAGAGALAAITS 656 (748)
T ss_pred HHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHH-HhhhhHHhhhccccccchhh
Confidence 8888887888877778888999999999999999876655555566633 344444444 45666666666666664444
Q ss_pred CC-CCCC-cccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHH
Q 009568 233 GK-PQPP-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 292 (532)
Q Consensus 233 ~~-~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 292 (532)
.. .... ..........+..++.+.+++++...+..+.++.....+....+.....++.+.
T Consensus 657 v~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~ 718 (748)
T KOG4151|consen 657 VVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLS 718 (748)
T ss_pred cchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHH
Confidence 33 1112 333455667888899999999999999999886665555555555555444443
No 174
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.79 E-value=0.086 Score=46.92 Aligned_cols=140 Identities=11% Similarity=0.187 Sum_probs=101.8
Q ss_pred cchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCC----CchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHH
Q 009568 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS----HKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGP 375 (532)
Q Consensus 301 ~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~ 375 (532)
.-...|+..+..++++.+ .+..++++.+--.+..+|... ..+.+|-.+.++|+.+.. ++.+.+..++..+++|.
T Consensus 94 nRVcnaL~LlQcvASHpd-Tr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPD-TRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred chHHHHHHHHHHHhcCcc-hHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 344567777777776555 666788888777777777432 246789999999999997 67788888889999999
Q ss_pred HHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHH--------cCChH-HHHhhcCCCCHHHHHHHHHHHHHHHH
Q 009568 376 LVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVR--------EGCIK-PLCDLFVCPDPRIVTVCLEGLENILK 443 (532)
Q Consensus 376 L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~--------~~~l~-~L~~lL~~~d~~v~~~al~~L~~l~~ 443 (532)
.++.++.++...+.-|...+..+.... ....|+++ .-++. .+..+.+.+++.+.+.++.+..++..
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD--~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDD--VGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD 247 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhcc--ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999887743 22333222 01222 33445567888888888888777753
No 175
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.76 E-value=0.072 Score=54.25 Aligned_cols=251 Identities=13% Similarity=0.089 Sum_probs=134.0
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCccccc
Q 009568 164 IFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR 243 (532)
Q Consensus 164 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 243 (532)
.++...+ .+...+..|+..+.....+-|...+. ++..++.++ .+.+..++..|+..|..+|.+. ...+.
T Consensus 27 ~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~~----~~~v~ 95 (556)
T PF05918_consen 27 EILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLC-EDEDVQIRKQAIKGLPQLCKDN----PEHVS 95 (556)
T ss_dssp HHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHH-T-SSHHHHHHHHHHGGGG--T------T-HH
T ss_pred HHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhHHHHHHhH----HHHHh
Confidence 3444444 57889999999999999988887666 478899999 7889999999999999999874 24556
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhC---CCCccchhhHHHHHHHhhc-CCcc
Q 009568 244 PALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG---HPSPSVLIPALRTVGNIVT-GDDF 319 (532)
Q Consensus 244 ~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~---~~~~~v~~~al~~L~nl~~-~~~~ 319 (532)
.+..+|+++|.++++.-...+=++|..+...++. +.+..++..+. ..+..+|..++..|..=.. -...
T Consensus 96 kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~ 167 (556)
T PF05918_consen 96 KVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPE 167 (556)
T ss_dssp HHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TT
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHH
Confidence 7888999999999887777777777766644332 22333333332 4567788888877754322 1111
Q ss_pred hhH--HHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc----CCHHHHHHHHHcCCHHHHHHHH------hcCchhH
Q 009568 320 QTQ--CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA----GNRDQIQAVIDAGLVGPLVNLL------QNAEFDI 387 (532)
Q Consensus 320 ~~~--~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~----~~~~~~~~l~~~~~i~~L~~ll------~~~~~~v 387 (532)
... .-.+.-++..+-++|.+- ...--.....+|..+-. .+....+.+++ .+.... ...+++.
T Consensus 168 ~~~p~~E~e~~i~~~ikkvL~DV-TaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~-----ii~eQa~Ld~~f~~sD~e~ 241 (556)
T PF05918_consen 168 LLTPQKEMEEFIVDEIKKVLQDV-TAEEFELFMSLLKSLKIYGGKQTIEGRQELVD-----IIEEQADLDQPFDPSDPES 241 (556)
T ss_dssp TS---HHHHHHHHHHHHHHCTT---HHHHHHHHHHHHTSGG---GSSHHHHHHHHH-----HHHHHHTTTS---SSSHHH
T ss_pred HhhchHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhCccccccCChHHHHHHHH-----HHHHHhccCCCCCCcCHHH
Confidence 111 112223445566666553 33333334445555443 24444444443 222222 2234444
Q ss_pred HHHHHHHHHHh----hcCC-CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568 388 KKEAAWAISNA----TSGG-THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 444 (532)
Q Consensus 388 ~~~a~~aL~nl----~~~~-~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~ 444 (532)
....+.++..- ..+. +.....++++ .++|.+-++ ++..+...|..+..+..+
T Consensus 242 Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~ 298 (556)
T PF05918_consen 242 IDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPF 298 (556)
T ss_dssp HHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCC
Confidence 44444444331 2221 4456666655 366655554 333333444555444443
No 176
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.65 E-value=0.11 Score=46.15 Aligned_cols=145 Identities=12% Similarity=0.141 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCC----CCHHHHHHHHHHHHHHhc-CChhhHHHHHhCCCh
Q 009568 88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE----DYPQLQFEAAWALTNIAS-GTSENTKVVIDHGAV 162 (532)
Q Consensus 88 ~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~----~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i 162 (532)
..-...|+..|..+++. .+....+.++.+=-.|-.+|... ...-+|..++.+++.+.. ++.+....+...++|
T Consensus 93 snRVcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIV 170 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIV 170 (293)
T ss_pred cchHHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhH
Confidence 33455677888888875 45566666665544445555432 236799999999999987 456677778889999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh-------cCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568 163 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS-------QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (532)
Q Consensus 163 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-------~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~ 234 (532)
|..++.+..+++.-+..|..++..|..++....-.+.. ...+..++..+.+.++..+...++.+..+|+.+.
T Consensus 171 PlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 171 PLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 99999999999999999999999998776543222111 1134444444446678888999999999998873
No 177
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.63 E-value=0.007 Score=47.84 Aligned_cols=70 Identities=17% Similarity=0.307 Sum_probs=57.7
Q ss_pred ChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHH
Q 009568 415 CIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKIL 493 (532)
Q Consensus 415 ~l~~L~~lL~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il 493 (532)
++..|+.+|. +.|+.++.+|+.=|..+++..+.. ...+++.|+-+.+..|+.|+|++|+..|...+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-------------r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~av 110 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-------------RNIIEKLGAKERVMELMNHEDPEVRYEALLAV 110 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-------------HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-------------HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHH
Confidence 5788899994 567888889999999999876543 66788999999999999999999999999988
Q ss_pred HHhC
Q 009568 494 ETYW 497 (532)
Q Consensus 494 ~~~~ 497 (532)
.++.
T Consensus 111 Qklm 114 (119)
T PF11698_consen 111 QKLM 114 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8763
No 178
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.62 E-value=0.12 Score=46.84 Aligned_cols=173 Identities=16% Similarity=0.168 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCC-----ccchhhHHHHHHHhhcCCc-chhHHHhhcCchHHHH
Q 009568 261 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS-----PSVLIPALRTVGNIVTGDD-FQTQCIITYGALPYLL 334 (532)
Q Consensus 261 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-----~~v~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~ 334 (532)
..+++..+..++.. ++....++++.+.-.|.++|...+ +.+|..++.++|.++..++ +....+++..++|..+
T Consensus 67 VcnaLaLlQ~vAsh-petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL 145 (262)
T PF04078_consen 67 VCNALALLQCVASH-PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL 145 (262)
T ss_dssp HHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHcC-hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence 34445455555654 555578999999989999986543 4578899999999998655 4567788999999999
Q ss_pred HHhcCCCchhHHHHHHHHHHHHhcC---------CHHHHHHHHHcCCHHHHHHHH-hcCchhHHHHHHHHHHHhhcCCCH
Q 009568 335 GLLTHSHKKSIKKEACWTISNITAG---------NRDQIQAVIDAGLVGPLVNLL-QNAEFDIKKEAAWAISNATSGGTH 404 (532)
Q Consensus 335 ~lL~~~~~~~v~~~a~~~L~nl~~~---------~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~aL~nl~~~~~~ 404 (532)
+.+..+ +.--|..|.+++..+..+ +++....+.. ++..++..+ ...++++-+.+.++-..++.+.
T Consensus 146 r~me~G-selSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~--vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp-- 220 (262)
T PF04078_consen 146 RIMEFG-SELSKTVATFILQKILLDDVGLNYICQTAERFFAVAM--VLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP-- 220 (262)
T ss_dssp HHHHHS--HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHH--HHHHHHHHHHHS--HHHHHHHHHHHHHHTTST--
T ss_pred HHHHhc-cHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHH--HHHHHHHHHccCCChhHHHHHHHHHHHHccCH--
Confidence 999988 888888899998877653 3333333322 344444433 4458889999999999998853
Q ss_pred HHHHHHHHcCChHHHHhh----cCCCCHHHHHHHHHHHHH
Q 009568 405 EQIKYLVREGCIKPLCDL----FVCPDPRIVTVCLEGLEN 440 (532)
Q Consensus 405 ~~~~~l~~~~~l~~L~~l----L~~~d~~v~~~al~~L~~ 440 (532)
..+..+.. ...+.|.+- +-..|+.+.......+.+
T Consensus 221 rar~aL~~-~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~n 259 (262)
T PF04078_consen 221 RAREALRQ-CLPDQLRDGTFSNILKDDPSTKRWLQQLLSN 259 (262)
T ss_dssp THHHHHHH-HS-GGGTSSTTTTGGCS-HHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCcHHHhcHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33444332 222222211 112466666655554444
No 179
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.61 E-value=0.054 Score=45.33 Aligned_cols=126 Identities=14% Similarity=0.091 Sum_probs=97.9
Q ss_pred hHHHHHhcCChHHHHHHhhhhhh-----hHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCC--CHHHHHHHHH
Q 009568 194 CRDLVLSQGALIPLLAQLNERAK-----LSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN--DEEVLTDACW 266 (532)
Q Consensus 194 ~~~~~~~~~~l~~L~~ll~~~~~-----~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~ 266 (532)
+...++..+++..|++++..+.. .++...++.++..|..+.-.........++..++..+... |..+...++.
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 34567788899999999965442 4788888899999888753333344456677777777643 7889999999
Q ss_pred HHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcc
Q 009568 267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF 319 (532)
Q Consensus 267 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~ 319 (532)
.|-+++.+++.....+.+.=-++.|+.+|..+++.++..++..+..|....++
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 99999998888777777766789999999999999999999888887766553
No 180
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.58 E-value=0.071 Score=51.93 Aligned_cols=147 Identities=12% Similarity=0.148 Sum_probs=101.6
Q ss_pred ChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHH-HhccCChhHHHH
Q 009568 203 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALS-YLSDGTNDKIQA 281 (532)
Q Consensus 203 ~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~-~l~~~~~~~~~~ 281 (532)
++..++..|.++.+...+..|+..|..+|+..+..-+....-.+..++..-.+.++++...|..+.. -++...+..
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--- 406 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--- 406 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh---
Confidence 4566777776668889999999999999999776666555666666666666666666555554433 333333322
Q ss_pred HHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568 282 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (532)
Q Consensus 282 ~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 358 (532)
-+..+..++...+......++..+..++..-....-..+-..+.|.+++...+. +..||+.|++||..+..
T Consensus 407 -----~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 407 -----CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred -----HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence 123344444446667777888888888876553322233347899999999998 99999999999988864
No 181
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.031 Score=58.25 Aligned_cols=227 Identities=13% Similarity=0.134 Sum_probs=142.3
Q ss_pred hhhccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh
Q 009568 71 TKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS 150 (532)
Q Consensus 71 ~~~~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~ 150 (532)
.+.+.+...+..++++.+.++-.|+..+++++.. ......+...+++..+++.|++.+ +-+-..|+..+..+|.-
T Consensus 724 ~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~--r~~~~~~~~ekvl~i~ld~Lkded-syvyLnaI~gv~~Lcev-- 798 (982)
T KOG4653|consen 724 VDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEK--RKKATLIQGEKVLAIALDTLKDED-SYVYLNAIRGVVSLCEV-- 798 (982)
T ss_pred ccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHHhcccC-ceeeHHHHHHHHHHHHh--
Confidence 3445678888888999999999999999999974 244445567789999999999998 78888899988888873
Q ss_pred hhHHHHHhCCChHHHHHhh-CC---CCHHHHHHHHHHHHHhhCC-CchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHH
Q 009568 151 ENTKVVIDHGAVPIFVKLL-AS---PSDDVREQAVWALGNVAGD-SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATW 225 (532)
Q Consensus 151 ~~~~~i~~~g~i~~L~~lL-~~---~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~ 225 (532)
....++|.|...- +. ..++.+-.+..++.+++.. ++-+..... -.+...+..+ .+++...+..++.
T Consensus 799 ------y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~--~Li~tfl~gv-repd~~~RaSS~a 869 (982)
T KOG4653|consen 799 ------YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA--VLINTFLSGV-REPDHEFRASSLA 869 (982)
T ss_pred ------cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH--HHHHHHHHhc-CCchHHHHHhHHH
Confidence 3446778888743 32 1134444455666666522 121111111 1345555555 4567778999999
Q ss_pred HhhhccCCCCCCCcccccchHHHHHHhhcCC-CHHHHHHHHHHHHHhccCChhHHHHHHHh---CchHHHHHhhCC-CCc
Q 009568 226 TLSNFCRGKPQPPFDQVRPALPALAQLVHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLGH-PSP 300 (532)
Q Consensus 226 ~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~-~~~ 300 (532)
.++++|.-....-......++..++.+...+ ...++..|...+..+..+.....-.+... +....+.+.... ++.
T Consensus 870 ~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd 949 (982)
T KOG4653|consen 870 NLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDD 949 (982)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 9999987643222234455666666666654 56688888888888775544222222211 223333333332 344
Q ss_pred cchhhHHHHHH
Q 009568 301 SVLIPALRTVG 311 (532)
Q Consensus 301 ~v~~~al~~L~ 311 (532)
.++..|+.++-
T Consensus 950 ~~klhaql~le 960 (982)
T KOG4653|consen 950 GLKLHAQLCLE 960 (982)
T ss_pred HHHHHHHHHHH
Confidence 45555555543
No 182
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.50 E-value=0.26 Score=47.12 Aligned_cols=171 Identities=16% Similarity=0.127 Sum_probs=109.6
Q ss_pred CcHHHHH-HhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-CCchh
Q 009568 117 GVVPRFV-EFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG-DSPRC 194 (532)
Q Consensus 117 g~i~~Lv-~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~-~~~~~ 194 (532)
+++..|+ ..+.+.+ +.+|..|+.||+-.+--+.+.... .++.+...+...+..++..|+.++..+.. ++...
T Consensus 26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4555555 6777888 899999999999998855544333 35777777777789999999999998863 22211
Q ss_pred HHHH-------HhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcC----CCHHHHHH
Q 009568 195 RDLV-------LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS----NDEEVLTD 263 (532)
Q Consensus 195 ~~~~-------~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~----~d~~v~~~ 263 (532)
-+.. ....++..+...+ .+.+++++..++..++.|.-...... ...++..|+-+.-+ ++..++..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 1111 1233555666666 55688899999999999877652222 23344444333322 24556655
Q ss_pred HHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCC
Q 009568 264 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP 298 (532)
Q Consensus 264 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 298 (532)
....+-..+..+... +..+...+++.+..+...+
T Consensus 176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence 555666666666655 4555557777777776553
No 183
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.73 Score=45.51 Aligned_cols=171 Identities=13% Similarity=0.144 Sum_probs=96.8
Q ss_pred HHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHH-hhCCCCccc
Q 009568 224 TWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLGHPSPSV 302 (532)
Q Consensus 224 ~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~v 302 (532)
...++.+.+............++..+..-..+++..++..|+.+|++.+...++....... ..+..++. +....+.+|
T Consensus 238 ~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V 316 (533)
T KOG2032|consen 238 IAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEV 316 (533)
T ss_pred HHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHH
Confidence 3344444444322233333444555555556777889999999999999886665554443 33444444 445567889
Q ss_pred hhhHHHHHHHhhcCCcc--hhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc--CC--HHHHHHHHHcCCHHHH
Q 009568 303 LIPALRTVGNIVTGDDF--QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA--GN--RDQIQAVIDAGLVGPL 376 (532)
Q Consensus 303 ~~~al~~L~nl~~~~~~--~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~--~~~~~~l~~~~~i~~L 376 (532)
...++.+|..+...-.. ....++ ++.-.+..++.+. ++++|..|...++.++. |. .+.....+..++.|.+
T Consensus 317 ~leam~~Lt~v~~~~~~~~l~~~~l--~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~ll 393 (533)
T KOG2032|consen 317 QLEAMKCLTMVLEKASNDDLESYLL--NIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLL 393 (533)
T ss_pred HHHHHHHHHHHHHhhhhcchhhhch--hHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccce
Confidence 99999888877643221 111111 2334456677777 89999999988888764 21 2222222333344433
Q ss_pred HHHHhcCchhHHHHHHHHHHHhhc
Q 009568 377 VNLLQNAEFDIKKEAAWAISNATS 400 (532)
Q Consensus 377 ~~ll~~~~~~v~~~a~~aL~nl~~ 400 (532)
+ .+.+.++.+- .||.+....+.
T Consensus 394 l-hl~d~~p~va-~ACr~~~~~c~ 415 (533)
T KOG2032|consen 394 L-HLQDPNPYVA-RACRSELRTCY 415 (533)
T ss_pred e-eeCCCChHHH-HHHHHHHHhcC
Confidence 3 3555555443 34555444443
No 184
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.29 Score=48.22 Aligned_cols=258 Identities=14% Similarity=0.140 Sum_probs=139.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCch-hHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCc-ccccchHH
Q 009568 170 ASPSDDVREQAVWALGNVAGDSPR-CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF-DQVRPALP 247 (532)
Q Consensus 170 ~~~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~l~ 247 (532)
.+++..++..|+..|+|.+...|. ++.. ..-.+..++.-|.++.+.++.-.++.+|..+......... ....++.-
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ial 345 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIAL 345 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHH
Confidence 347889999999999999988553 2222 2224666666665666788888888888777655422221 12233334
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHh---CchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHH
Q 009568 248 ALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCI 324 (532)
Q Consensus 248 ~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~ 324 (532)
.+..+..+.+++.+..+...++.|+.......+...-. +-...++-.+.++++.+ ..||+.....+..+- ..+.+
T Consensus 346 rlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~~c~p~l-~rke~ 423 (533)
T KOG2032|consen 346 RLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELRTCYPNL-VRKEL 423 (533)
T ss_pred HHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHHhcCchh-HHHHH
Confidence 45667778899999999998888774322221222211 22333444455666544 345666555553221 11111
Q ss_pred hhcCchHHHHHHhcCCCchhHHH-HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC
Q 009568 325 ITYGALPYLLGLLTHSHKKSIKK-EACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGT 403 (532)
Q Consensus 325 ~~~~~l~~L~~lL~~~~~~~v~~-~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 403 (532)
.++++ +.+ +..-+..+. ..-|+ -.+....++....+.. ....++.+.-+.+|..|..--.+....-.
T Consensus 424 --~~~~q---~~l-d~~~~~~q~Fyn~~c-~~L~~i~~d~l~~~~t-----~~~~~f~sswe~vr~aavl~t~~~vd~l~ 491 (533)
T KOG2032|consen 424 --YHLFQ---ESL-DTDMARFQAFYNQWC-IQLNHIHPDILMLLLT-----EDQHIFSSSWEQVREAAVLKTTRSVDSLV 491 (533)
T ss_pred --HHHHh---hhh-HHhHHHHHHHHHHHH-HHHhhhCHHHHHHHHH-----hchhheecchHHHHHHHHHHHHHHHHHhH
Confidence 01111 111 110111111 11121 1222223333322222 12223444444566655555555555545
Q ss_pred HHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 009568 404 HEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILK 443 (532)
Q Consensus 404 ~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~ 443 (532)
+..+.+.-..-+...+..+...+-+++...+..++..+..
T Consensus 492 ~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 492 RAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 5555554444456778888888999999999999887764
No 185
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.39 E-value=0.0056 Score=48.37 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=60.2
Q ss_pred CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009568 328 GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 400 (532)
Q Consensus 328 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 400 (532)
.++..|+.+|..+.++.+..-||.-|+.++...|.....+-+.|+-..++.+|.+++++||.+|+.|+..+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4678899999555488889999999999999777777666678899999999999999999999999987754
No 186
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.33 E-value=0.37 Score=51.46 Aligned_cols=195 Identities=18% Similarity=0.161 Sum_probs=119.1
Q ss_pred HHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHH--HHHHhhcCCCH-H
Q 009568 183 ALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP--ALAQLVHSNDE-E 259 (532)
Q Consensus 183 ~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~--~L~~lL~~~d~-~ 259 (532)
+|+++....+.....+++.+++..+...+......++...++..+.+++...+..........+. .+-.++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 45577777777788889999999999999766788899999999999998763333332222222 33334444444 6
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCc-chhHHHhhcCchHHHHHHhc
Q 009568 260 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD-FQTQCIITYGALPYLLGLLT 338 (532)
Q Consensus 260 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~ 338 (532)
.-..++..++.+...+++... ...+..+...+......-. .........-..+.+..++.
T Consensus 574 rsY~~~siLa~ll~~~~~~~~-------------------~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~ 634 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTE-------------------CVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILR 634 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCcc-------------------ccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhc
Confidence 777777777776654332111 1122223222222222111 11111222222222666676
Q ss_pred CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-chhHHHHHHHHHH
Q 009568 339 HSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAIS 396 (532)
Q Consensus 339 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~ 396 (532)
.+..+..+..|.|++.+++..+++..+.+.+.++++.+...-... ..+++.++...+.
T Consensus 635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 693 (699)
T KOG3665|consen 635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE 693 (699)
T ss_pred ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence 665788999999999999998888777788888888877654433 3455555554443
No 187
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.31 E-value=0.036 Score=47.17 Aligned_cols=145 Identities=17% Similarity=0.193 Sum_probs=102.1
Q ss_pred hHHHHHhhC--CCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009568 288 CPRLVELLG--HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ 365 (532)
Q Consensus 288 l~~L~~lL~--~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 365 (532)
+..++..|. ...+.++..++-++..+. + ....-....+-+.+-..+... +.+-...++.++..+.-+.++...
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~-~~~~~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---D-AAREEFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH---H-HhHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHH
Confidence 344555554 356788999999988885 2 222223334456666677666 666788899999999989898888
Q ss_pred HHH-HcCCHHHHHHHHh--cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcC-CCCHH-HHHHHHHHHHH
Q 009568 366 AVI-DAGLVGPLVNLLQ--NAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV-CPDPR-IVTVCLEGLEN 440 (532)
Q Consensus 366 ~l~-~~~~i~~L~~ll~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~d~~-v~~~al~~L~~ 440 (532)
.++ ..|+++.+..++. ..+..++..++.+|..-+.. +.+...+...+++.|.++++ ++++. ++..++-+|.+
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d---~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID---KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS---HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 887 6788999999999 67889999999999888773 33444444567899999996 45555 67666666543
No 188
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=1.8 Score=45.10 Aligned_cols=298 Identities=15% Similarity=0.078 Sum_probs=166.8
Q ss_pred HHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhC--CCchhHHHHHhcCChHHH
Q 009568 138 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--------PSDDVREQAVWALGNVAG--DSPRCRDLVLSQGALIPL 207 (532)
Q Consensus 138 a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~nl~~--~~~~~~~~~~~~~~l~~L 207 (532)
|+.++..+....++. .+ .|+++.+...|.. .+..-.+-|++.++++.. +.+..-..+++.=+++.+
T Consensus 390 al~fl~~~~sKrke~--Tf--qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv 465 (970)
T COG5656 390 ALFFLIISKSKRKEE--TF--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHV 465 (970)
T ss_pred HHHHHHHHhcccchh--hh--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHh
Confidence 445555554422221 12 3888999998832 234556678888887764 222222334444455555
Q ss_pred HHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCc
Q 009568 208 LAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV 287 (532)
Q Consensus 208 ~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 287 (532)
+..+ ++...-++..+|.+++.+..+ -+.......+......++++++-.|+..|+.++..+..+. +....+...+
T Consensus 466 ~P~f-~s~ygfL~Srace~is~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~--q~h~k~sahV 540 (970)
T COG5656 466 IPAF-RSNYGFLKSRACEFISTIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE--QSHEKFSAHV 540 (970)
T ss_pred hHhh-cCcccchHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch--hhhHHHHhhh
Confidence 5555 666677888999999998443 3344445567777788888888889999999998877553 2333344333
Q ss_pred hHHHHHhh---CCCCccchhhHHHHH-HHhhcCCcchhHHHhh---cCchHHHHHHhcCCCc-----hhHHHHHHHHHHH
Q 009568 288 CPRLVELL---GHPSPSVLIPALRTV-GNIVTGDDFQTQCIIT---YGALPYLLGLLTHSHK-----KSIKKEACWTISN 355 (532)
Q Consensus 288 l~~L~~lL---~~~~~~v~~~al~~L-~nl~~~~~~~~~~~~~---~~~l~~L~~lL~~~~~-----~~v~~~a~~~L~n 355 (532)
.+.+-++| +.-+.++...++..+ +..+..-......+.. ...+.....++..+.+ .+-+-.|.+.|..
T Consensus 541 p~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T 620 (970)
T COG5656 541 PETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRT 620 (970)
T ss_pred hHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHH
Confidence 33333333 333333333333222 2222111111111111 1223333334433211 1233445555554
Q ss_pred Hhc------CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCH-
Q 009568 356 ITA------GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDP- 428 (532)
Q Consensus 356 l~~------~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~- 428 (532)
+.. ..+...+.+. ....|.+--.+.+.-.++-.+|+..+-+++... .+.... -=|+.+.+.+++.+++.
T Consensus 621 ~~smiLSlen~p~vLk~le-~slypvi~Filkn~i~dfy~Ea~dildg~tf~s-keI~pi--mwgi~Ell~~~l~~~~t~ 696 (970)
T COG5656 621 IESMILSLENRPLVLKYLE-VSLYPVISFILKNEISDFYQEALDILDGYTFMS-KEIEPI--MWGIFELLLNLLIDEITA 696 (970)
T ss_pred HHHHHHhcccchHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH-HHhhhh--hhHHHHHHHhcccccchh
Confidence 432 3444443333 335666656677777788889998888776531 121111 22678888888888775
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 009568 429 RIVTVCLEGLENILKVGEAE 448 (532)
Q Consensus 429 ~v~~~al~~L~~l~~~~~~~ 448 (532)
.-...+..++.|++.+|.+.
T Consensus 697 ~y~ee~~~al~nfityG~~e 716 (970)
T COG5656 697 VYSEEVADALDNFITYGKTE 716 (970)
T ss_pred hhHHHHHHHHHHHHHhCccc
Confidence 66777888999999998654
No 189
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.61 Score=48.37 Aligned_cols=297 Identities=17% Similarity=0.116 Sum_probs=164.3
Q ss_pred HHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCC-------CCHHHHHHHHHHHHHHhc--CChhhHHHHHhCCChH
Q 009568 93 EATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-------DYPQLQFEAAWALTNIAS--GTSENTKVVIDHGAVP 163 (532)
Q Consensus 93 ~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~-------~~~~~~~~a~~~L~~l~~--~~~~~~~~i~~~g~i~ 163 (532)
.|+..+..+.+.. ..-.-.|+++.++..|... +++.-.+.|++.+.++.. ....-...+.+.-+++
T Consensus 389 aal~fl~~~~sKr-----ke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~ 463 (970)
T COG5656 389 AALFFLIISKSKR-----KEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVN 463 (970)
T ss_pred HHHHHHHHHhccc-----chhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 4555555554432 1122347899999998421 234555667777777765 2333344455555677
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCccc--
Q 009568 164 IFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ-- 241 (532)
Q Consensus 164 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~-- 241 (532)
.++..++++.--++..++..+..+..+ .++..+-..+.+....++ ++.+..++-.|+.++.-+..+. ......
T Consensus 464 hv~P~f~s~ygfL~Srace~is~~eeD---fkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~-q~h~k~sa 538 (970)
T COG5656 464 HVIPAFRSNYGFLKSRACEFISTIEED---FKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNE-QSHEKFSA 538 (970)
T ss_pred HhhHhhcCcccchHHHHHHHHHHHHHh---cccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhch-hhhHHHHh
Confidence 777788888888999999999998544 334444444566777777 5577788888888888888775 122222
Q ss_pred -ccchHHHHHHhhcCCCHHHHHHHHHHH-HHhccC----ChhHHHHHHHhCchHHHHHhhCCCC------ccchhhHHHH
Q 009568 242 -VRPALPALAQLVHSNDEEVLTDACWAL-SYLSDG----TNDKIQAVIEAGVCPRLVELLGHPS------PSVLIPALRT 309 (532)
Q Consensus 242 -~~~~l~~L~~lL~~~d~~v~~~a~~~L-~~l~~~----~~~~~~~~~~~~~l~~L~~lL~~~~------~~v~~~al~~ 309 (532)
+.+.++.|+.+-+.-+.++...+...+ .+.+.. .++....+++ .++.....++..++ .+-+..|..+
T Consensus 539 hVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~-qFlkiaq~l~ens~d~~s~vDDKqmaasGi 617 (970)
T COG5656 539 HVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVR-QFLKIAQSLLENSSDTSSVVDDKQMAASGI 617 (970)
T ss_pred hhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHH-HHHHHHHHHHcCCccccccccHHHHHHHHH
Confidence 223333333333333444444444333 222222 1122111111 22333333333321 1234445555
Q ss_pred HHHhhc---CCc--chhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCc
Q 009568 310 VGNIVT---GDD--FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAE 384 (532)
Q Consensus 310 L~nl~~---~~~--~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 384 (532)
|..+.+ .-+ ...-.-+.....|.+--+|++. ...+-.+|+-.+-+++-...+ +.. +--|+.+.+.+++.+..
T Consensus 618 L~T~~smiLSlen~p~vLk~le~slypvi~Filkn~-i~dfy~Ea~dildg~tf~ske-I~p-imwgi~Ell~~~l~~~~ 694 (970)
T COG5656 618 LRTIESMILSLENRPLVLKYLEVSLYPVISFILKNE-ISDFYQEALDILDGYTFMSKE-IEP-IMWGIFELLLNLLIDEI 694 (970)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHH-hhh-hhhHHHHHHHhcccccc
Confidence 544432 111 1111223446677777777777 778888999988887653222 111 11245555555555554
Q ss_pred -hhHHHHHHHHHHHhhcCCC
Q 009568 385 -FDIKKEAAWAISNATSGGT 403 (532)
Q Consensus 385 -~~v~~~a~~aL~nl~~~~~ 403 (532)
...-.++.-++.|+...|.
T Consensus 695 t~~y~ee~~~al~nfityG~ 714 (970)
T COG5656 695 TAVYSEEVADALDNFITYGK 714 (970)
T ss_pred hhhhHHHHHHHHHHHHHhCc
Confidence 3667888999999988774
No 190
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.18 E-value=0.32 Score=50.06 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=80.2
Q ss_pred cccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcch
Q 009568 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 320 (532)
Q Consensus 241 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~ 320 (532)
.+.+.+..+++...+++..|+..+|..|..+....... ...+-.++...+...+.+..+.||..|+.+|+.+=..+...
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~ei-dd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEI-DDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccccc-CHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 56777778888888999999999999999998743332 22333367777888888899999999999999987322211
Q ss_pred hHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHH
Q 009568 321 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS 354 (532)
Q Consensus 321 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 354 (532)
+..+...+..+++...+++||+.|...+.
T Consensus 161 -----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 -----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred -----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 23456678888876658999998866554
No 191
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.01 E-value=0.24 Score=50.67 Aligned_cols=172 Identities=19% Similarity=0.134 Sum_probs=118.1
Q ss_pred cCCChHHHHHHHHHHH--HHhcCCCCCchhHhhhCCcHHHHHHhhcC---CCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009568 84 WSDDSSLQLEATTQFR--KLLSIERSPPIEEVIQSGVVPRFVEFLMR---EDYPQLQFEAAWALTNIASGTSENTKVVID 158 (532)
Q Consensus 84 ~s~~~~~~~~a~~~l~--~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~ 158 (532)
....++....|...++ .++.+++ -+-..+-|...+...+ .+++.++..|.-+|..+.+-+.+.+..
T Consensus 863 ggtsEddf~da~~fikE~ElLyGek------svLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~e--- 933 (1128)
T COG5098 863 GGTSEDDFVDAFFFIKEKELLYGEK------SVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSE--- 933 (1128)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhchh------HHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHH---
Confidence 3333444455555554 3444431 1122345556666654 124899999999999987756555443
Q ss_pred CCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCC
Q 009568 159 HGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP 237 (532)
Q Consensus 159 ~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~ 237 (532)
-+|.|+..+. +++|.+|.+|+-.|+.++..-....+. .-..|.+-| .+.+..+++.|..++.+|.-..
T Consensus 934 --hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLyrrL-~De~~~V~rtclmti~fLilag--- 1002 (1128)
T COG5098 934 --HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLYRRL-GDEDADVRRTCLMTIHFLILAG--- 1002 (1128)
T ss_pred --HHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc---
Confidence 3589999887 699999999999999876432222121 245566666 6778899999999999887543
Q ss_pred CcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q 009568 238 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN 276 (532)
Q Consensus 238 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~ 276 (532)
...++|-++.++.+|.++|.++..-|-..+..++....
T Consensus 1003 -q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdN 1040 (1128)
T COG5098 1003 -QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDN 1040 (1128)
T ss_pred -ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhccc
Confidence 34568889999999999999998888778877775544
No 192
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=96.00 E-value=0.066 Score=38.44 Aligned_cols=66 Identities=24% Similarity=0.356 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHcC
Q 009568 346 KKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREG 414 (532)
Q Consensus 346 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~ 414 (532)
.|.|.|++++++.. +..+..+.+.++++.++++.... ...+|-.|.++|+-++. +.+..+.|.+.|
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence 57899999999874 55566666789999999998865 67899999999998887 667777666655
No 193
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.97 E-value=0.034 Score=53.21 Aligned_cols=114 Identities=15% Similarity=0.172 Sum_probs=84.6
Q ss_pred CchHH-HHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHH
Q 009568 328 GALPY-LLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQ 406 (532)
Q Consensus 328 ~~l~~-L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~ 406 (532)
+++.. +...+.+. ++.+|..|..+||-++--+.+.... .++.+...+..++..++..|+.++..+........
T Consensus 26 ~ll~~lI~P~v~~~-~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSS-DPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 34434 34777888 8999999999999998755443222 45677888877799999999999999876433332
Q ss_pred HHHHH-------HcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 009568 407 IKYLV-------REGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA 447 (532)
Q Consensus 407 ~~~l~-------~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 447 (532)
..... ...+++.+...+++.+++++..+.+++.+++-.+.-
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i 147 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI 147 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 22211 235688888999999999999999999999876643
No 194
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.93 E-value=1.2 Score=48.07 Aligned_cols=209 Identities=15% Similarity=0.189 Sum_probs=123.0
Q ss_pred hCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhh---hhhh----hHHHHHHHH
Q 009568 158 DHGAVPIFVKLLAS-----PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN---ERAK----LSMLRNATW 225 (532)
Q Consensus 158 ~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~----~~~~~~a~~ 225 (532)
+.|++..|+.++.+ ....+....+..|...| .-+.+|..+++.++++.|+..+. +... ..+.+..+.
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~-Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC-KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH-hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 56889999988876 23445555565555554 44678999999999999999885 2222 455555555
Q ss_pred HhhhccCCCCCCCc-------------ccccchHHHHHHhhcC----CCHHHHHHHHHHHHHhccCChhHHHHHHHhCch
Q 009568 226 TLSNFCRGKPQPPF-------------DQVRPALPALAQLVHS----NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 288 (532)
Q Consensus 226 ~L~~L~~~~~~~~~-------------~~~~~~l~~L~~lL~~----~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l 288 (532)
++-.+......... .....-+..++..+.+ .++.+....++.|-+|+.+..+..+.+++. +
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F 271 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--F 271 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--H
Confidence 55444333211000 0123346666666654 368899999999999999988887766642 2
Q ss_pred HHHHHhhCCC--CccchhhHHHHHHHhhcCCc------chhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCC
Q 009568 289 PRLVELLGHP--SPSVLIPALRTVGNIVTGDD------FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360 (532)
Q Consensus 289 ~~L~~lL~~~--~~~v~~~al~~L~nl~~~~~------~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 360 (532)
.+.+.+=.-+ ...--...+.+++.++.+-+ ...+.+++.|++...+..|... -|.. .+. .
T Consensus 272 ~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~--------~~~--~- 339 (802)
T PF13764_consen 272 KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSL--------KNT--D- 339 (802)
T ss_pred HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-Cccc--------ccC--C-
Confidence 2222221111 11111234677777776543 3456788889998888888655 4433 111 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHh
Q 009568 361 RDQIQAVIDAGLVGPLVNLLQ 381 (532)
Q Consensus 361 ~~~~~~l~~~~~i~~L~~ll~ 381 (532)
.......+....+|.++++|.
T Consensus 340 s~eWk~~l~~psLp~iL~lL~ 360 (802)
T PF13764_consen 340 SPEWKEFLSRPSLPYILRLLR 360 (802)
T ss_pred CHHHHHHhcCCcHHHHHHHHH
Confidence 223344444555666665554
No 195
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.91 E-value=0.39 Score=43.97 Aligned_cols=102 Identities=13% Similarity=0.072 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHh
Q 009568 133 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL 211 (532)
Q Consensus 133 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll 211 (532)
.+...|+.+|--++--++..+..+.....+..|+.+|.. ..+.++..++.+|..+..+++.+...+-+.+++..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 456667888888888889999999999999999999954 6789999999999999999999888999999999999999
Q ss_pred hh-hhhhHHHHHHHHHhhhccCCC
Q 009568 212 NE-RAKLSMLRNATWTLSNFCRGK 234 (532)
Q Consensus 212 ~~-~~~~~~~~~a~~~L~~L~~~~ 234 (532)
+. +.+.+++-.++.+|.-.....
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHccc
Confidence 63 347788888887777555443
No 196
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.86 E-value=2.5 Score=43.21 Aligned_cols=253 Identities=13% Similarity=0.082 Sum_probs=136.2
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 009568 87 DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 166 (532)
Q Consensus 87 ~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~ 166 (532)
..+.|..+...+..++....... . ... ..+.+.+.....++.-..-+.+|..++.+..+. ...+.++.+.|.
T Consensus 42 p~e~R~~~~~ll~~~i~~~~~~~-~-~~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~ 113 (464)
T PF11864_consen 42 PSEARRAALELLIACIKRQDSSS-G-LMR----AEFFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLL 113 (464)
T ss_pred CHHHHHHHHHHHHHHHHcccccc-H-HHH----HHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHH
Confidence 45678888888888887642211 0 111 122233333322332223334444455433333 224556777777
Q ss_pred HhhCC---------------------------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHH
Q 009568 167 KLLAS---------------------------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSM 219 (532)
Q Consensus 167 ~lL~~---------------------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~ 219 (532)
..|.. .+.......+..+.|+...+...-+.-.-.+.+..++.+..+..++..
T Consensus 114 ~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~d 193 (464)
T PF11864_consen 114 SWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDD 193 (464)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHH
Confidence 76631 022333445555666654433221211123345555556545555555
Q ss_pred HHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC--
Q 009568 220 LRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-- 297 (532)
Q Consensus 220 ~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-- 297 (532)
...++.++-.+.... ..+......++..|....... +....+-.++.||+...... ..+..|..+|..
T Consensus 194 i~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~ 263 (464)
T PF11864_consen 194 IEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPD 263 (464)
T ss_pred HHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccC
Confidence 666777666666553 122233344555555543322 55556666778887554322 346677777732
Q ss_pred ----CCccchhhHHHHHHHhhcCCcchhHHHhhc---CchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568 298 ----PSPSVLIPALRTVGNIVTGDDFQTQCIITY---GALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (532)
Q Consensus 298 ----~~~~v~~~al~~L~nl~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 358 (532)
.+..+..-|+..++.+..+.......-+.. -+++.+...++.. ++.+-.+....+.++..
T Consensus 264 ~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 264 PQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLLD 330 (464)
T ss_pred ccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHHh
Confidence 234456678899999887773222222222 2788888999887 77788888888888774
No 197
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.77 E-value=0.017 Score=33.83 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=25.8
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 009568 118 VVPRFVEFLMREDYPQLQFEAAWALTNIAS 147 (532)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~ 147 (532)
++|.+++++++++ +++|..|+++|+.++.
T Consensus 1 llp~l~~~l~D~~-~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPS-PEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SS-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCC-HHHHHHHHHHHHHHHh
Confidence 4799999999998 9999999999999875
No 198
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.77 E-value=0.19 Score=53.91 Aligned_cols=192 Identities=14% Similarity=0.102 Sum_probs=129.2
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHh-hCCCCccchhhHHHHHHHhhcCCcchhH
Q 009568 244 PALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LGHPSPSVLIPALRTVGNIVTGDDFQTQ 322 (532)
Q Consensus 244 ~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~ 322 (532)
.+-+.+..-+.+.++.-+..++..+.-.......... ....+.+..++.. +.+.+..+...++.+|.-|+........
T Consensus 253 ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~-~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~ 331 (815)
T KOG1820|consen 253 KITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIV-KGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR 331 (815)
T ss_pred hcChHHHHhhhccchHHHHHHHHHHHHHHhccccccc-cCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence 3334455556678888888888888777655431101 1111333333333 3556778888999999999987654432
Q ss_pred HHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009568 323 CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG 402 (532)
Q Consensus 323 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 402 (532)
. ...++.|.++.-+... .+.++..+..++-.++..++- ..+.+.+...+.++++.++.++...+.......
T Consensus 332 ~-~~~~v~p~lld~lkek-k~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~ 402 (815)
T KOG1820|consen 332 K-YAKNVFPSLLDRLKEK-KSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKL 402 (815)
T ss_pred H-HHHhhcchHHHHhhhc-cHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhc
Confidence 2 2337788999999887 777887777777666653322 125678888999999999999887777776543
Q ss_pred CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568 403 THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG 445 (532)
Q Consensus 403 ~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (532)
++.....-.-.++++.++....+.+.+|+.++++++..+++..
T Consensus 403 ~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 403 GPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred CCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 3211111112357888888889999999999999999888754
No 199
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.70 E-value=0.017 Score=33.81 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=25.7
Q ss_pred chHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568 329 ALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (532)
Q Consensus 329 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 358 (532)
++|.+.+++.++ ++.||..|+++|+.++.
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence 478999999999 99999999999999975
No 200
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.68 E-value=0.09 Score=46.38 Aligned_cols=111 Identities=18% Similarity=0.205 Sum_probs=80.0
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcC--------CCCHHHHHHHHHHHHHHh
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR--------EDYPQLQFEAAWALTNIA 146 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~--------~~~~~~~~~a~~~L~~l~ 146 (532)
....+++.+.+..... ..+..|+..+......-++.+++.|++..|+++|.. .....++..++.||..|.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 4466788887765443 566666666664322237778889999999998853 122688999999999999
Q ss_pred cCChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009568 147 SGTSENTKVVID-HGAVPIFVKLLASPSDDVREQAVWALGNVA 188 (532)
Q Consensus 147 ~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~ 188 (532)
. +......++. .+++..|+..|.+++..++..++.+|+.+|
T Consensus 145 n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 N-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp S-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred c-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 8 5555666665 688999999999999999999999999886
No 201
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=95.68 E-value=1.3 Score=42.99 Aligned_cols=164 Identities=17% Similarity=0.178 Sum_probs=115.0
Q ss_pred HHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhc-CCcchhHHHhhc-C-chHHHHHHhcCCC----c--------hh
Q 009568 280 QAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT-GDDFQTQCIITY-G-ALPYLLGLLTHSH----K--------KS 344 (532)
Q Consensus 280 ~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~-~~~~~~~~~~~~-~-~l~~L~~lL~~~~----~--------~~ 344 (532)
+.+++.. +..+...|......+..++++.|..++. ........++.. + -.+.+.+++.... . +.
T Consensus 51 ~~iL~~~-~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~s 129 (330)
T PF11707_consen 51 RSILQNH-LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPS 129 (330)
T ss_pred HHHHHHH-HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcC
Confidence 3344433 7888888998888899999999999998 444555555543 1 2345566653221 1 27
Q ss_pred HHHHHHHHHHHH-hcCCHHHHHHHH-HcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCC---CHHHHHHHHHcCChHHH
Q 009568 345 IKKEACWTISNI-TAGNRDQIQAVI-DAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG---THEQIKYLVREGCIKPL 419 (532)
Q Consensus 345 v~~~a~~~L~nl-~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~---~~~~~~~l~~~~~l~~L 419 (532)
+|......+..+ ..+++.....++ +.+.+..+.+-|..+++++....+.+|..-+... .....-.+.....+..|
T Consensus 130 iR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l 209 (330)
T PF11707_consen 130 IRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQL 209 (330)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHH
Confidence 888877655554 457777777777 4567889999999888999999999998644432 22333344455678899
Q ss_pred HhhcCCCCH----HHHHHHHHHHHHHHHh
Q 009568 420 CDLFVCPDP----RIVTVCLEGLENILKV 444 (532)
Q Consensus 420 ~~lL~~~d~----~v~~~al~~L~~l~~~ 444 (532)
..+....++ .+...+-+.|..++..
T Consensus 210 ~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 210 ASLYSRDGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred HHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence 998888777 8888888888888753
No 202
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.68 E-value=0.92 Score=46.88 Aligned_cols=102 Identities=17% Similarity=0.173 Sum_probs=74.8
Q ss_pred CchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc--CCHHH
Q 009568 286 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA--GNRDQ 363 (532)
Q Consensus 286 ~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~ 363 (532)
+++.+++....+++..||..+|.+|..+.......-+.+ -.++...+..-+.+. .|.||.+|..+|+.+-. ++++
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~v-fn~l~e~l~~Rl~Dr-ep~VRiqAv~aLsrlQ~d~~dee- 161 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDV-FNKLNEKLLIRLKDR-EPNVRIQAVLALSRLQGDPKDEE- 161 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHH-HHHHHHHHHHHHhcc-CchHHHHHHHHHHHHhcCCCCCc-
Confidence 667777777788899999999999999887443322333 336777777777777 89999999999999964 2222
Q ss_pred HHHHHHcCCHHHHHHHHhcC-chhHHHHHHHHHH
Q 009568 364 IQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAIS 396 (532)
Q Consensus 364 ~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~ 396 (532)
..++..+..+++++ +++||+.|+..+.
T Consensus 162 ------~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 162 ------CPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred ------ccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 23567778888775 7899988765543
No 203
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.63 E-value=0.06 Score=55.18 Aligned_cols=192 Identities=11% Similarity=0.153 Sum_probs=134.0
Q ss_pred HHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CH
Q 009568 283 IEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NR 361 (532)
Q Consensus 283 ~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~ 361 (532)
+..+++|.|++++...+..+|..-+.-+-... +...+..++..++|.+..-+.+. ++.+|..++.++..++.. +.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i---~~Lt~~~~~d~I~phv~~G~~DT-n~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI---DHLTKQILNDQIFPHVALGFLDT-NATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHh---hhcCHHhhcchhHHHHHhhcccC-CHHHHHHHHHHHHHHHhhhch
Confidence 44589999999999999999876665555554 34556778889999999999999 999999999999888752 22
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCC-hHHHHhhcCCCCHHHHHHHHHHHHH
Q 009568 362 DQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGC-IKPLCDLFVCPDPRIVTVCLEGLEN 440 (532)
Q Consensus 362 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~-l~~L~~lL~~~d~~v~~~al~~L~~ 440 (532)
. .++..++..+.++-.+.+..+|.+...+|+.+...-.+.. ..++ ..++..-++++-..-+...+.++..
T Consensus 403 ~----~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~-----R~~vL~~aftralkdpf~paR~a~v~~l~a 473 (690)
T KOG1243|consen 403 R----NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV-----RKRVLASAFTRALKDPFVPARKAGVLALAA 473 (690)
T ss_pred h----hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh-----hccccchhhhhhhcCCCCCchhhhhHHHhh
Confidence 1 2223344444444444577899999989988877644332 2233 4466666666666677777776665
Q ss_pred HHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCccc
Q 009568 441 ILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDE 503 (532)
Q Consensus 441 l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~~~~ 503 (532)
..+.-+... .+ ...+..+.-+.-++++.+...|...++.|++..+..
T Consensus 474 t~~~~~~~~-----------va-----~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 474 TQEYFDQSE-----------VA-----NKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred cccccchhh-----------hh-----hhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence 544332211 12 334567777788999999999999999998865544
No 204
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=95.61 E-value=1.3 Score=41.32 Aligned_cols=201 Identities=12% Similarity=0.103 Sum_probs=131.1
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH----HHHHhcCChHHHHHHhhhhhh-hHHHHHHHHHhhh
Q 009568 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR----DLVLSQGALIPLLAQLNERAK-LSMLRNATWTLSN 229 (532)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~----~~~~~~~~l~~L~~ll~~~~~-~~~~~~a~~~L~~ 229 (532)
.+.++|.+..|++.+..-+-+-+..++.+..|+-...-..| +.+.. -...+-.++....+ +++.-.+...+..
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t--~~e~~~~lv~~~~~~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLET--NPEILDNLVKGYENTPEIALTCGNMLRE 151 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHh--CHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 56678999999999988778888888888888753322222 22211 12223333322222 5555555555555
Q ss_pred ccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCc---hHH-HHHhhCCCCccchhh
Q 009568 230 FCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV---CPR-LVELLGHPSPSVLIP 305 (532)
Q Consensus 230 L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~---l~~-L~~lL~~~~~~v~~~ 305 (532)
..+...-.........+......++.+.=++..+|..++..+.......+..++.... ++. --.++.+.+.-++..
T Consensus 152 cirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq 231 (342)
T KOG1566|consen 152 CIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ 231 (342)
T ss_pred HHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence 4444322222333445555556666676788889999988887665555555554432 333 556678889999999
Q ss_pred HHHHHHHhhcCCcc---hhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568 306 ALRTVGNIVTGDDF---QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (532)
Q Consensus 306 al~~L~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 358 (532)
++..+|.+.-+.+. .++++....-+..++.+|+.+ +..++-+|..+..-..+
T Consensus 232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvA 286 (342)
T KOG1566|consen 232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVA 286 (342)
T ss_pred HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhc
Confidence 99999998866552 344555557789999999998 99999999988877766
No 205
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.57 E-value=3.3 Score=42.41 Aligned_cols=283 Identities=14% Similarity=0.132 Sum_probs=145.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 009568 88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK 167 (532)
Q Consensus 88 ~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ 167 (532)
...+..|+..++..+..- + ...+.+ +....-.++.....++.|..+...|..+..+......... ..+..
T Consensus 4 l~~R~~a~~~l~~~i~~~--~-~~~i~~--iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R-----~~fF~ 73 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKY--P-LSSIEE--IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMR-----AEFFR 73 (464)
T ss_pred HHHHHHHHHHHHHHHHhC--C-chHHHH--HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH-----HHHHH
Confidence 345777888888877642 1 122211 3344445666655578999999998888874433111111 11222
Q ss_pred hhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhh--------------------------hhHHH
Q 009568 168 LLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA--------------------------KLSML 220 (532)
Q Consensus 168 lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~--------------------------~~~~~ 220 (532)
.+.. ..++-...-+.+|..|+.++... ...+.++.+.|...+...- +....
T Consensus 74 ~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l 151 (464)
T PF11864_consen 74 DISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNL 151 (464)
T ss_pred HHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhH
Confidence 2232 33433445566677776666544 2246667777777663211 11222
Q ss_pred HHHHHHhhhccCCC-CCCCcccccchHHHHHHhhc-CCCHHHHHHHHHHHHHhccCChhHHHHHHHhC-----chHHHHH
Q 009568 221 RNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVIEAG-----VCPRLVE 293 (532)
Q Consensus 221 ~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-----~l~~L~~ 293 (532)
...+..+.++.+.. .......+.+++..++.+.. +..+.....++..+-. ++..| .++.++.
T Consensus 152 ~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vlda-----------ii~y~~iP~~sl~~~i~ 220 (464)
T PF11864_consen 152 SDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDA-----------IITYGDIPSESLSPCIE 220 (464)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH-----------HHHcCcCChHHHHHHHH
Confidence 23333333333332 11222222333333333321 1222222222222222 22222 2223333
Q ss_pred hhCC--CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCC-----CchhHHHHHHHHHHHHhcCCHHHHHH
Q 009568 294 LLGH--PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS-----HKKSIKKEACWTISNITAGNRDQIQA 366 (532)
Q Consensus 294 lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~ 366 (532)
.|-+ ........+-.++.||+...-.+ ..+..|..+|.++ .+..+.+.|...+..+..+..+....
T Consensus 221 vLCsi~~~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~ 293 (464)
T PF11864_consen 221 VLCSIVNSVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYP 293 (464)
T ss_pred HHhhHhcccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcc
Confidence 3322 23367777888888888643322 2345677777321 14567788999999888765222211
Q ss_pred HHH-c--CCHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009568 367 VID-A--GLVGPLVNLLQNAEFDIKKEAAWAISNATS 400 (532)
Q Consensus 367 l~~-~--~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 400 (532)
-+. . -+++.+...++.++..+-.+++..+.++..
T Consensus 294 ~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 294 SLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred eecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 121 1 268888999998888888888888888874
No 206
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=95.54 E-value=4.4 Score=43.70 Aligned_cols=127 Identities=13% Similarity=0.178 Sum_probs=73.6
Q ss_pred chhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh
Q 009568 302 VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ 381 (532)
Q Consensus 302 v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 381 (532)
++..+.-+|+++|-..+...+ ..+|.|++-|.......+|.+..-+++.+|.... .+++ ..+|.+-..|.
T Consensus 947 vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT----am~d-~YiP~I~~~L~ 1016 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT----AMTD-RYIPMIAASLC 1016 (1529)
T ss_pred HHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH----HHHH-HhhHHHHHHhc
Confidence 344455556666544332222 3456666666554345566666666666654311 1222 26777877888
Q ss_pred cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCC--hHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568 382 NAEFDIKKEAAWAISNATSGGTHEQIKYLVREGC--IKPLCDLFVCPDPRIVTVCLEGLENILKVG 445 (532)
Q Consensus 382 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~--l~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (532)
++++-||+.+...|.++...+ ++.-.|. +..+..++ +.+++++..+--++..++...
T Consensus 1017 Dp~~iVRrqt~ilL~rLLq~~------~vKw~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1017 DPSVIVRRQTIILLARLLQFG------IVKWNGELFIRFMLALL-DANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred CchHHHHHHHHHHHHHHHhhh------hhhcchhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhhc
Confidence 888888888888888887632 2222333 33333333 456777777777777777654
No 207
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=95.53 E-value=0.53 Score=46.14 Aligned_cols=171 Identities=10% Similarity=0.106 Sum_probs=103.7
Q ss_pred HHHHHHH-HhhhccCCCCCCCcccccchHHHHHHhhcC-CCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhC
Q 009568 219 MLRNATW-TLSNFCRGKPQPPFDQVRPALPALAQLVHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG 296 (532)
Q Consensus 219 ~~~~a~~-~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 296 (532)
-+..+.. ...-+|.+.-.........++-.++..|.. .++..+..|++.|..++...+.....-.+ -++..+++.-.
T Consensus 303 ~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Leaa~ 381 (516)
T KOG2956|consen 303 ERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLEAAK 381 (516)
T ss_pred HHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHHHHh
Confidence 3444444 333444443333333445666777788877 67888999999999999776644221111 23444555555
Q ss_pred CCCccchhhHHHH-HHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHH
Q 009568 297 HPSPSVLIPALRT-VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVG 374 (532)
Q Consensus 297 ~~~~~v~~~al~~-L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~ 374 (532)
+..+.+...|... +.-+++..+.. .+..+..++... +...-..+...+..++.. ..+..-.++ ..+.|
T Consensus 382 ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~diaP 451 (516)
T KOG2956|consen 382 DSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLL-PDIAP 451 (516)
T ss_pred CCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhh-hhhhh
Confidence 5555555555444 44444444422 133444455445 555556666677777763 334333334 35899
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHhhc
Q 009568 375 PLVNLLQNAEFDIKKEAAWAISNATS 400 (532)
Q Consensus 375 ~L~~ll~~~~~~v~~~a~~aL~nl~~ 400 (532)
.+++..++.+..||+.|+++|..+..
T Consensus 452 ~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 452 CVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 99999999999999999999998865
No 208
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.51 E-value=0.23 Score=53.31 Aligned_cols=187 Identities=14% Similarity=0.077 Sum_probs=130.4
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccc
Q 009568 163 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV 242 (532)
Q Consensus 163 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 242 (532)
+.+..-+.+++..-|..++..+..+..... ........+.+..++.....+.+..+...++.+|..++..-......+.
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 444445556777888888888887765443 1111122344555566665777888899999999888877644455556
Q ss_pred cchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcc-hh
Q 009568 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF-QT 321 (532)
Q Consensus 243 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~-~~ 321 (532)
..++|.++..+......++..+..++-.++.... -..+.+.+..++.+.++.++..+...+.......+. ..
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 7888888888888888887777666655543221 125678888999999999999988888887765552 11
Q ss_pred HHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568 322 QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (532)
Q Consensus 322 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 358 (532)
..---.+++|.++....+. +..||..|..+++-+..
T Consensus 408 ~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK 443 (815)
T ss_pred chhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence 1112236788888888888 99999999999888765
No 209
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.50 E-value=0.52 Score=43.17 Aligned_cols=103 Identities=23% Similarity=0.276 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHH
Q 009568 387 IKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLV 465 (532)
Q Consensus 387 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 465 (532)
....|+..|.-++.- .+.....+-+...+..|+++|+ ...+.+...++.+|..++-..... ...|
T Consensus 107 li~~aL~vLQGl~LL-Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N-------------~r~F 172 (257)
T PF08045_consen 107 LIALALRVLQGLCLL-HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPEN-------------QRDF 172 (257)
T ss_pred HHHHHHHHHHHHHHc-CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHH-------------HHHH
Confidence 345566777776665 3455566678889999999995 467889999999999998766543 5679
Q ss_pred HHhccHHHHHHHhc--CCCHHHHHHHHHHHHHhCCCCccc
Q 009568 466 EEAEGLEKIENLQS--HDNNEIYEKAVKILETYWLEEDDE 503 (532)
Q Consensus 466 ~~~g~~~~l~~L~~--~~~~~v~~~a~~il~~~~~~~~~~ 503 (532)
++.+|+..+-.+.. +-+.+++-++.+.+--|+.+|...
T Consensus 173 E~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~ 212 (257)
T PF08045_consen 173 EELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPS 212 (257)
T ss_pred HHhCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCC
Confidence 99999999999964 456779999999998888876544
No 210
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.48 E-value=1.4 Score=47.30 Aligned_cols=198 Identities=17% Similarity=0.201 Sum_probs=118.0
Q ss_pred HHHHhccCChhHHHHHHHhCchHHHHHhhCC-CCccchhhHHHHHHHhhcCCcchhHHHhhcCc-hHHHHHHhcCCCchh
Q 009568 267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDDFQTQCIITYGA-LPYLLGLLTHSHKKS 344 (532)
Q Consensus 267 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~-l~~L~~lL~~~~~~~ 344 (532)
++++++...++....+++.+++..+...+.. .+..++..++..++|++...+..........+ ...+..++......+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7778888889999999999999999999975 56778999999999999765422211111111 123333444441336
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHH-HHhhc
Q 009568 345 IKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKP-LCDLF 423 (532)
Q Consensus 345 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~-L~~lL 423 (532)
.-..|+.+|+.+...+++.. ..+.-+ .+......++........ .. .....+.+ +..++
T Consensus 574 rsY~~~siLa~ll~~~~~~~----~~~~r~-----------~~~~~l~e~i~~~~~~~~----~~-~~~~~f~~~~~~il 633 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTT----ECVFRN-----------SVNELLVEAISRWLTSEI----RV-INDRSFFPRILRIL 633 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCc----cccchH-----------HHHHHHHHHhhccCccce----ee-hhhhhcchhHHHHh
Confidence 66777777777766433211 111111 111222222222222111 00 11112233 44445
Q ss_pred C-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHHHHhC
Q 009568 424 V-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH-DNNEIYEKAVKILETYW 497 (532)
Q Consensus 424 ~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~-~~~~v~~~a~~il~~~~ 497 (532)
. +..+..+.+|++++.+++....+ |+..+.+.|++..++++..+ .-.++...+..+++...
T Consensus 634 ~~s~~~g~~lWal~ti~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 696 (699)
T KOG3665|consen 634 RLSKSDGSQLWALWTIKNVLEQNKE-------------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE 696 (699)
T ss_pred cccCCCchHHHHHHHHHHHHHcChh-------------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence 4 45577888999999999875332 68888899999999988432 35667777777776543
No 211
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.098 Score=52.14 Aligned_cols=151 Identities=22% Similarity=0.315 Sum_probs=102.9
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcC
Q 009568 124 EFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL-LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG 202 (532)
Q Consensus 124 ~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~ 202 (532)
+++.+.+ +-+|...+..++---.++. ..|++..|+.. .++.+.++|+.|+-+|+-+|.+.+.
T Consensus 523 ell~d~d-s~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------- 585 (926)
T COG5116 523 ELLYDKD-SILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------- 585 (926)
T ss_pred HHhcCch-HHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence 3444444 5666665555443333222 23677778876 6668899999999999999877654
Q ss_pred ChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHH
Q 009568 203 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAV 282 (532)
Q Consensus 203 ~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~ 282 (532)
.+...+++|..+.+..++.-.+.+|.-.|.+.. ...++..|-.+..++..-|+..|+-+++.+.....+....-
T Consensus 586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G------~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~ 659 (926)
T COG5116 586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTG------DKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN 659 (926)
T ss_pred hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc------cHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence 466678888778899999999999998887742 23456677788888888999999999988775443322222
Q ss_pred HHhCchHHHHHhhCCC
Q 009568 283 IEAGVCPRLVELLGHP 298 (532)
Q Consensus 283 ~~~~~l~~L~~lL~~~ 298 (532)
+. ++...+...+.+.
T Consensus 660 v~-~I~k~f~~vI~~K 674 (926)
T COG5116 660 VK-RIIKKFNRVIVDK 674 (926)
T ss_pred HH-HHHHHHHHHHhhh
Confidence 21 4556666666543
No 212
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.42 E-value=0.45 Score=47.59 Aligned_cols=251 Identities=12% Similarity=0.061 Sum_probs=131.0
Q ss_pred HHHHHHHHhcCChhh-HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhh
Q 009568 138 AAWALTNIASGTSEN-TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAK 216 (532)
Q Consensus 138 a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 216 (532)
+...|..+....+.. ....++...+..|+.++.++++.=|+....+|.++-+.....|..+.. .+...+.+.+.....
T Consensus 110 vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~ 188 (409)
T PF01603_consen 110 VYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETER 188 (409)
T ss_dssp HHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCccc
Confidence 444555554422211 223444566788999999999999999999999987655555555433 345556666644455
Q ss_pred hHHHHHHHHHhhhccCCCCCCCcc-cccchHHHHHHhhcCCCHH-HHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHh
Q 009568 217 LSMLRNATWTLSNFCRGKPQPPFD-QVRPALPALAQLVHSNDEE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 294 (532)
Q Consensus 217 ~~~~~~a~~~L~~L~~~~~~~~~~-~~~~~l~~L~~lL~~~d~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 294 (532)
..-...++..++.+..+-..+-.. ...-....++++...+.-. .-.....++..+...++..... ++..++..
T Consensus 189 ~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~llk~ 263 (409)
T PF01603_consen 189 HNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKGLLKH 263 (409)
T ss_dssp -STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHHHHHh
Confidence 556667777788777765323222 2233334556666554322 2333344444444333333221 22223332
Q ss_pred hCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc---C
Q 009568 295 LGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDA---G 371 (532)
Q Consensus 295 L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~---~ 371 (532)
=-..+..-...-+.-+..+....+...-.-+...+...+...+.+. +..|-..|+..+.|= . +-.++.. .
T Consensus 264 WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~-----~-~~~li~~~~~~ 336 (409)
T PF01603_consen 264 WPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNE-----Y-FLSLISQNSRV 336 (409)
T ss_dssp S-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSH-----H-HHHHHHCTHHH
T ss_pred CCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCH-----H-HHHHHHhChHH
Confidence 2223333333445556666654432211222235667788888888 888888887664432 1 1122211 1
Q ss_pred CHHHHHHHHhc----C-chhHHHHHHHHHHHhhcC
Q 009568 372 LVGPLVNLLQN----A-EFDIKKEAAWAISNATSG 401 (532)
Q Consensus 372 ~i~~L~~ll~~----~-~~~v~~~a~~aL~nl~~~ 401 (532)
++|.++..+.. . +..|+..|..++.-+..-
T Consensus 337 i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 337 ILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEM 371 (409)
T ss_dssp HHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 45666665543 2 567888888777766553
No 213
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.42 E-value=2.9 Score=45.20 Aligned_cols=240 Identities=16% Similarity=0.179 Sum_probs=145.4
Q ss_pred cchHHHHHHhhcC-----CCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhC----CCC----ccchhhHHHH
Q 009568 243 RPALPALAQLVHS-----NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG----HPS----PSVLIPALRT 309 (532)
Q Consensus 243 ~~~l~~L~~lL~~-----~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~----~~~----~~v~~~al~~ 309 (532)
.+++..++.++.+ .+.+....++..|.+++.- ..+.+.+++.+.++.|+..+. .+. ..+....+.+
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 3566777777653 2345666677777776655 445677888999999888773 333 5667777777
Q ss_pred HHHhhcCCcchhHHH----h--------hcCchHHHHHHhcCCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Q 009568 310 VGNIVTGDDFQTQCI----I--------TYGALPYLLGLLTHSH---KKSIKKEACWTISNITAGNRDQIQAVIDAGLVG 374 (532)
Q Consensus 310 L~nl~~~~~~~~~~~----~--------~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~ 374 (532)
+..+........... . +..-+..++..+.+.. ++.+....+.+|.+++.|+++..+.+++. +.
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~ 272 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FK 272 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HH
Confidence 777664322110000 0 1122566666665442 57889999999999999999988888863 23
Q ss_pred HHHHHHhcC---chhHHHHHHHHHHHhhcCC-----CHHHHHHHHHcCChHHHHhhcCCCC--------HH--------H
Q 009568 375 PLVNLLQNA---EFDIKKEAAWAISNATSGG-----THEQIKYLVREGCIKPLCDLFVCPD--------PR--------I 430 (532)
Q Consensus 375 ~L~~ll~~~---~~~v~~~a~~aL~nl~~~~-----~~~~~~~l~~~~~l~~L~~lL~~~d--------~~--------v 430 (532)
..+++=.-+ ..+- ...+.+++.++.+- .......+++.|++...+++|...- ++ -
T Consensus 273 p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps 351 (802)
T PF13764_consen 273 PYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS 351 (802)
T ss_pred HhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence 333322111 1111 22355555555432 2356677789999998888875321 22 2
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHh-cCCCHHHHHHHHHHHHHhCCCC
Q 009568 431 VTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ-SHDNNEIYEKAVKILETYWLEE 500 (532)
Q Consensus 431 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~-~~~~~~v~~~a~~il~~~~~~~ 500 (532)
...+|..|.-+...... .+.+...+++..+-.|- -+....|-..|.++|+.+-+.+
T Consensus 352 Lp~iL~lL~GLa~gh~~--------------tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 352 LPYILRLLRGLARGHEP--------------TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred HHHHHHHHHHHHhcCHH--------------HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 34566666666654332 22233456677777773 3446778888888888776543
No 214
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.17 E-value=0.95 Score=45.32 Aligned_cols=261 Identities=13% Similarity=0.111 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC
Q 009568 91 QLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA 170 (532)
Q Consensus 91 ~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~ 170 (532)
....-..|..++......+.+..++...+..|+.++.++| +.-|.....+|.++-......+..+.. .+...+.+++.
T Consensus 107 L~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~ 184 (409)
T PF01603_consen 107 LQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIY 184 (409)
T ss_dssp HHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhc
Confidence 3345566666665432223555777789999999999999 898999888998887655555555543 34466666665
Q ss_pred C-CCHHHHHHHHHHHHHhhCCCc-hhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHH
Q 009568 171 S-PSDDVREQAVWALGNVAGDSP-RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPA 248 (532)
Q Consensus 171 ~-~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~ 248 (532)
. ....-...++.+++.+..+-. ..+..-.. -....++.+.....-.........++..++..+| .....++..
T Consensus 185 e~~~~~gI~elLeil~sii~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp----~l~~~~i~~ 259 (409)
T PF01603_consen 185 ETERHNGIAELLEILGSIINGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP----SLAEPVIKG 259 (409)
T ss_dssp TTS--STHHHHHHHHHHHHTT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G----GGHHHHHHH
T ss_pred CcccccCHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc----hhHHHHHHH
Confidence 4 334445667778888765421 12111100 0122333344222233344555555555554432 112233333
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhccCCh-hHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhc
Q 009568 249 LAQLVHSNDEEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITY 327 (532)
Q Consensus 249 L~~lL~~~d~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~ 327 (532)
+++.=-..++.-....+.-+..+....+ ..... +...++..+...+.+++..|...|+..+.| +... .++..
T Consensus 260 llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~-i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~-~li~~ 332 (409)
T PF01603_consen 260 LLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQK-IMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFL-SLISQ 332 (409)
T ss_dssp HHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHH-HHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHH-HHHHC
T ss_pred HHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHH-HHHHh
Confidence 4333334455544555555555554332 33222 233677888888899998898888876643 2122 22222
Q ss_pred ---CchHHHHHHhcC-----CCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009568 328 ---GALPYLLGLLTH-----SHKKSIKKEACWTISNITAGNRDQIQA 366 (532)
Q Consensus 328 ---~~l~~L~~lL~~-----~~~~~v~~~a~~~L~nl~~~~~~~~~~ 366 (532)
.++|.+...|.. - +..|+..|..++.-+..-++.....
T Consensus 333 ~~~~i~p~i~~~L~~~~~~HW-n~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 333 NSRVILPIIFPALYRNSKNHW-NQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp THHHHHHHHHHHHSSTTSS-S-STTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 356777776633 3 6789999999999998877765544
No 215
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=95.05 E-value=4 Score=48.28 Aligned_cols=264 Identities=14% Similarity=0.098 Sum_probs=140.3
Q ss_pred CCChHHHHHHHHHHHHHhcCC--CCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009568 85 SDDSSLQLEATTQFRKLLSIE--RSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAV 162 (532)
Q Consensus 85 s~~~~~~~~a~~~l~~l~~~~--~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i 162 (532)
+.+..+...|+..|+.++..- ..+....-.+..++.+|..++....+.+++...+.|+.++..... ..+ .. +.
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~nI-kS-GW 1222 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---NNV-KS-GW 1222 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---hhh-hc-Cc
Confidence 345678888888888876531 011111122345788888878766558999999999999876322 223 22 56
Q ss_pred HHHHHhhC----CCCHHHHHHHHHHHHHhhCCCchh-----HHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhc---
Q 009568 163 PIFVKLLA----SPSDDVREQAVWALGNVAGDSPRC-----RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF--- 230 (532)
Q Consensus 163 ~~L~~lL~----~~~~~v~~~a~~~L~nl~~~~~~~-----~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L--- 230 (532)
..+..++. ..++.+.+.|..++..|+.+.-.. .+.+. .++..+.....+..+..+--.++..|+++
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence 66777665 357888899999888886442110 01111 12333333332222333333333333322
Q ss_pred -cCCC----------C-------------CC------CcccccchHH---HHHHhhcCCCHHHHHHHHHHHHHhccC---
Q 009568 231 -CRGK----------P-------------QP------PFDQVRPALP---ALAQLVHSNDEEVLTDACWALSYLSDG--- 274 (532)
Q Consensus 231 -~~~~----------~-------------~~------~~~~~~~~l~---~L~~lL~~~d~~v~~~a~~~L~~l~~~--- 274 (532)
+.+. . .. .......-+| .|..+....+.+|+..|+.+|..+...
T Consensus 1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076 1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence 1110 0 00 0000122333 344445677899999999999877633
Q ss_pred --ChhHHHHHHHhCchHHHHHhhCCC----------------C---cc----chhh---HHHHHHHhhcCCcchhHHHhh
Q 009568 275 --TNDKIQAVIEAGVCPRLVELLGHP----------------S---PS----VLIP---ALRTVGNIVTGDDFQTQCIIT 326 (532)
Q Consensus 275 --~~~~~~~~~~~~~l~~L~~lL~~~----------------~---~~----v~~~---al~~L~nl~~~~~~~~~~~~~ 326 (532)
+++....++. +++-+++..+++. + .+ +... |++.+..+....-.....+++
T Consensus 1381 ~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~ 1459 (1780)
T PLN03076 1381 LFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK 1459 (1780)
T ss_pred cCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444444 4555555544311 0 00 1233 344444443322112222222
Q ss_pred cCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568 327 YGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (532)
Q Consensus 327 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 358 (532)
+++..|..++..+ +..+-+-++.+|.++..
T Consensus 1460 -~~l~ll~~ci~q~-n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076 1460 -KVLMLLVSFIKRP-HQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred -HHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence 5555556666666 77888888888888875
No 216
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.01 E-value=0.96 Score=44.46 Aligned_cols=241 Identities=17% Similarity=0.188 Sum_probs=126.5
Q ss_pred hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhh-hccCCCCCCCc
Q 009568 162 VPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS-NFCRGKPQPPF 239 (532)
Q Consensus 162 i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~-~L~~~~~~~~~ 239 (532)
+..++.-|.+ ....+|..++--|+.-+.+ +.+|..+..+|....+++.+....+..+...++.++. -++++......
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 4555655553 4567888888888888764 5689999999999999999954444435444444444 44444444444
Q ss_pred ccccchHHHHHHhhcCC-CHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhC---------CCCccchhhHHHH
Q 009568 240 DQVRPALPALAQLVHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG---------HPSPSVLIPALRT 309 (532)
Q Consensus 240 ~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~---------~~~~~v~~~al~~ 309 (532)
.........+..++... ...+..... . ..........+ ..+..+...+. +....-+..|+.+
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~-~~~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------S-SRKKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchh------h-hhhhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 34456666667777611 000000000 0 00000011111 12222222221 2234456677777
Q ss_pred HHHhhcC--------------CcchhHHHhhcCchHHHHHHhcC----CC------c-----hhHHHHHHHHHHHHhcCC
Q 009568 310 VGNIVTG--------------DDFQTQCIITYGALPYLLGLLTH----SH------K-----KSIKKEACWTISNITAGN 360 (532)
Q Consensus 310 L~nl~~~--------------~~~~~~~~~~~~~l~~L~~lL~~----~~------~-----~~v~~~a~~~L~nl~~~~ 360 (532)
+-.++.. .+...+.+...|++..++.++.. .. . ...-..+.++|-|.+..+
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 7777410 11223445566788888888752 10 1 112345667777777654
Q ss_pred HHHHHHHHH--cCCHHHHHH----HHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 009568 361 RDQIQAVID--AGLVGPLVN----LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVR 412 (532)
Q Consensus 361 ~~~~~~l~~--~~~i~~L~~----ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 412 (532)
.+...+++. .+.++.+.. ........+...++..+.|++.+. +..+..+..
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n-~~~c~~~~s 310 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN-PSACEEFAS 310 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC-ccchHhhhh
Confidence 444444443 233333332 222233455678888999998764 344444333
No 217
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.00 E-value=2.9 Score=42.48 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=79.5
Q ss_pred cccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCc
Q 009568 239 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 318 (532)
Q Consensus 239 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~ 318 (532)
...+.+.+..+++.+.++|..|+..+|..|+.+++.-.+. ...+-.+++..|...+-+.++.++..|+.+|+.+-....
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 4556778888888888999999999999999988664432 444555888888888888899999999999998764332
Q ss_pred chhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHH
Q 009568 319 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI 353 (532)
Q Consensus 319 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 353 (532)
.. +..+...+..+++...+.+||+.|..-+
T Consensus 165 ne-----en~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 165 NE-----ENRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred Ch-----HHHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 11 1123446667776654778988775443
No 218
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.95 E-value=0.24 Score=45.86 Aligned_cols=147 Identities=18% Similarity=0.178 Sum_probs=104.9
Q ss_pred cchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhH
Q 009568 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ 322 (532)
Q Consensus 243 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~ 322 (532)
...+...+..|.+.|++...+++..+..|+....+.....+. .++-.++.-+.+....+-..|+.+++.|.+.-.....
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677788899999999999999999877766555554 5667777778888888999999999999876554443
Q ss_pred HHhhcCchHHHHHHh-cCC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009568 323 CIITYGALPYLLGLL-THS--HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT 399 (532)
Q Consensus 323 ~~~~~~~l~~L~~lL-~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 399 (532)
. -+..++..| ... .+.-|+..|-.+|..+..+-..+. +++.|+..+.+..+.++..++.++.++.
T Consensus 166 ~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~-------~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 166 Q-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK-------LLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred H-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH-------HHHHHHHHHhhhchhhhhhhhccccccc
Confidence 3 233333333 221 134578888888888876422221 5677888888889999999988887776
Q ss_pred cCC
Q 009568 400 SGG 402 (532)
Q Consensus 400 ~~~ 402 (532)
...
T Consensus 234 ~rl 236 (334)
T KOG2933|consen 234 IRL 236 (334)
T ss_pred eec
Confidence 543
No 219
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.89 E-value=6.2 Score=41.72 Aligned_cols=318 Identities=13% Similarity=0.114 Sum_probs=173.0
Q ss_pred cHHHHHhhhcCC-ChHHHHHHHHHHHHHhcCCCCCchhHh--hhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009568 75 SLPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEV--IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE 151 (532)
Q Consensus 75 ~l~~lv~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~--i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 151 (532)
....+++.++.. |..++..+++.++-++..- +-.-+.+ .-..+...+.+++..-..-+.+...+..|+.+.....+
T Consensus 527 ~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~-nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e 605 (978)
T KOG1993|consen 527 LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDW-NFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSE 605 (978)
T ss_pred HHHHHHHhcCccccceeehHHHHHHHHhhhhc-cCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 456777888866 7778889999998887643 1111111 12334445555665433245677777777777653333
Q ss_pred hHHHHHhCCChHHHHHhh---CCCCHHHHHHHHHHHHHhhC----CCchhHHHHHhcCChHHHHHHhhhh---hhhHHHH
Q 009568 152 NTKVVIDHGAVPIFVKLL---ASPSDDVREQAVWALGNVAG----DSPRCRDLVLSQGALIPLLAQLNER---AKLSMLR 221 (532)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL---~~~~~~v~~~a~~~L~nl~~----~~~~~~~~~~~~~~l~~L~~ll~~~---~~~~~~~ 221 (532)
...... +-+-.++..| .++.+-++...+.+|.|+.. .++.+. .++-+++.+-.+. +..-+.+
T Consensus 606 ~I~P~~--~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~------~fL~pVIel~~D~~sP~hv~L~E 677 (978)
T KOG1993|consen 606 HIAPYA--STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFY------PFLYPVIELSTDPSSPEHVYLLE 677 (978)
T ss_pred hhhHHH--HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccch------HHHHHHHHHhcCCCCCceeehhh
Confidence 332111 1111122222 12567788888888888862 112111 1233333333221 1223455
Q ss_pred HHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHH-HhccCChhHHHHHHHhCchHHHHHhhCCCCc
Q 009568 222 NATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300 (532)
Q Consensus 222 ~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~-~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 300 (532)
.+.........+.+ .-....-.++|.+...+....+.+. -++..+. |+.-.+... -.....|++..+..++.+-..
T Consensus 678 DgmeLW~~~L~n~~-~l~p~ll~L~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~~f-l~~y~~~i~k~~~~~l~dvr~ 754 (978)
T KOG1993|consen 678 DGMELWLTTLMNSQ-KLTPELLLLFPHLLYIIEQSTENLP-TVLMIISSYILLDNTVF-LNDYAFGIFKKLNDLLDDVRN 754 (978)
T ss_pred hHHHHHHHHHhccc-ccCHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhccHHH-HHHHHHHHHHHHHHHHHHhhH
Confidence 55544444444331 1122335677888888765544433 2333332 333223322 223344788888888887666
Q ss_pred cchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhc-CCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cC-------
Q 009568 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT-HSHKKSIKKEACWTISNITAGNRDQIQAVID-AG------- 371 (532)
Q Consensus 301 ~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~------- 371 (532)
+-....+.++..+...++ ........++++.+..-+- ....|.+-..-..+++.+.-.+++.+..+++ ..
T Consensus 755 egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~ 833 (978)
T KOG1993|consen 755 EGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIA 833 (978)
T ss_pred HHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHH
Confidence 667778888888887665 3334455678887765542 2226777778888888888777776665553 12
Q ss_pred -CHHHHHHHHhc-CchhHHHHHHHHHHHhhcCCCHH
Q 009568 372 -LVGPLVNLLQN-AEFDIKKEAAWAISNATSGGTHE 405 (532)
Q Consensus 372 -~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~~~ 405 (532)
++...+.++.+ .+++-|+--+-|+..+...+.+.
T Consensus 834 ~li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~ 869 (978)
T KOG1993|consen 834 MLIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPD 869 (978)
T ss_pred HHHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcH
Confidence 12222222222 36666776677777776655443
No 220
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.88 E-value=0.72 Score=47.43 Aligned_cols=167 Identities=17% Similarity=0.204 Sum_probs=114.4
Q ss_pred CCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhC-CCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHH
Q 009568 256 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLL 334 (532)
Q Consensus 256 ~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~ 334 (532)
+|++++..|..+|..+..-+.+... .-+|.++..+. +++|.+|..|+-.+|.++-......+ ..-..|.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~d-----e~t~yLy 977 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTAD-----EHTHYLY 977 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhH-----HHHHHHH
Confidence 6888988888888776544333322 56788888886 79999999999999988765443333 2234677
Q ss_pred HHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcC
Q 009568 335 GLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREG 414 (532)
Q Consensus 335 ~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~ 414 (532)
.-|.+. +..||+.+..++.++.-.+. +--.|-++.+..+|.+++.++...|-..+..++...+. +-.|
T Consensus 978 rrL~De-~~~V~rtclmti~fLilagq-----~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt------~yn~ 1045 (1128)
T COG5098 978 RRLGDE-DADVRRTCLMTIHFLILAGQ-----LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNT------MYNG 1045 (1128)
T ss_pred HHhcch-hhHHHHHHHHHHHHHHHccc-----eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccc------hhhh
Confidence 888887 89999999999999875322 11256788999999999999999999999999876442 1234
Q ss_pred ChHHHHhhcCC---CCHHHHHHHHHHHHHHHHhh
Q 009568 415 CIKPLCDLFVC---PDPRIVTVCLEGLENILKVG 445 (532)
Q Consensus 415 ~l~~L~~lL~~---~d~~v~~~al~~L~~l~~~~ 445 (532)
.++.+-.+-++ .+.. -..++..|..++...
T Consensus 1046 fidifs~ls~~ae~g~e~-fk~II~FLt~fI~ke 1078 (1128)
T COG5098 1046 FIDIFSTLSSDAENGQEP-FKLIIGFLTDFISKE 1078 (1128)
T ss_pred hHHHHHHcCchhhcCCCc-HHHHHHHHHHHHHHH
Confidence 44444333321 2222 334555566565543
No 221
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.87 E-value=0.14 Score=36.80 Aligned_cols=65 Identities=18% Similarity=0.308 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhc
Q 009568 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQ 201 (532)
Q Consensus 135 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~ 201 (532)
...|+|+++++++ ++.....+.+.++++.++++..+ +...+|-.|+++|+-++.... -.+.+.+.
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~-G~~~L~~~ 69 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEE-GAEILDEL 69 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHH-HHHHHHHc
Confidence 4678999999998 66666666678999999998875 778999999999999976543 34444443
No 222
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=94.76 E-value=0.23 Score=42.32 Aligned_cols=146 Identities=10% Similarity=0.054 Sum_probs=85.7
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009568 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 197 (532)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 197 (532)
+++.|.++|+.+.+..+|.+++++|+.|..-+|-..+.+... .+.-. -...+.......... .+.....+ .
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~~~~~~~~~l~~-~~~~~~~e----e 81 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENSNDESTDISLPM-MGISPSSE----E 81 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccccccchhhHHhh-ccCCCchH----H
Confidence 678889999987668999999999999988666544422211 11000 011112222222211 11111111 2
Q ss_pred HHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 009568 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS 272 (532)
Q Consensus 198 ~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~ 272 (532)
..-..++..|++.|.+..-..-...++.++.++..............++|.++..+++.++..++..++-|+.+.
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 222335778888885444344444566666666644433446667889999999999777788887777776654
No 223
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=94.71 E-value=1.3 Score=43.52 Aligned_cols=264 Identities=19% Similarity=0.155 Sum_probs=136.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHH-HHhhCCCchhHH
Q 009568 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWAL-GNVAGDSPRCRD 196 (532)
Q Consensus 119 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L-~nl~~~~~~~~~ 196 (532)
+..+++-|.+.....+|..++--|+.-+. +++.+..+..+|.+..+++.+.. ++..+...++.++ .-++.+.. .-.
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence 45566666644446889998888888888 89999999999999999999855 4442444444444 44444443 333
Q ss_pred HHHhcCChHHHHHHhh--hh----hhh-----HHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc---------CC
Q 009568 197 LVLSQGALIPLLAQLN--ER----AKL-----SMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH---------SN 256 (532)
Q Consensus 197 ~~~~~~~l~~L~~ll~--~~----~~~-----~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~---------~~ 256 (532)
.+...+....++.++. .. .+. ....... ...+..+.+.+. ..
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~------------------~~~~~~~~~~~~~~~~~~~~~~~ 162 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQ------------------QKSRSLCKELLSSGSSWKSPKPP 162 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHH------------------HHHHHHHHHHHhccccccccCCc
Confidence 4444555555566663 00 000 0000000 011111111110 01
Q ss_pred CHHHHHHHHHHHHHhc--------------cCChhHHHHHHHhCchHHHHHhhC----CC-------C-----ccchhhH
Q 009568 257 DEEVLTDACWALSYLS--------------DGTNDKIQAVIEAGVCPRLVELLG----HP-------S-----PSVLIPA 306 (532)
Q Consensus 257 d~~v~~~a~~~L~~l~--------------~~~~~~~~~~~~~~~l~~L~~lL~----~~-------~-----~~v~~~a 306 (532)
...-+..++.++-.++ ...+.....+...|++..++..+. .. . ......+
T Consensus 163 ~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~c 242 (361)
T PF07814_consen 163 ELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERC 242 (361)
T ss_pred ccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHH
Confidence 1112222222222221 111122234555677888887764 11 1 1234568
Q ss_pred HHHHHHhhcCCcchhHHHhhc--CchHHHHHH-hcCC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH-
Q 009568 307 LRTVGNIVTGDDFQTQCIITY--GALPYLLGL-LTHS--HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLL- 380 (532)
Q Consensus 307 l~~L~nl~~~~~~~~~~~~~~--~~l~~L~~l-L~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll- 380 (532)
+++|-+.+..+.....+++.. +.++.+... +... ..+.+...++..+.|++..++.....+...++...+..+.
T Consensus 243 l~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~ 322 (361)
T PF07814_consen 243 LSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVT 322 (361)
T ss_pred HHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHH
Confidence 888888887766555455443 333333322 2222 0234456788999999988876666555443322211111
Q ss_pred ------h-------cCchhHHHHHHHHHHHhhcCC
Q 009568 381 ------Q-------NAEFDIKKEAAWAISNATSGG 402 (532)
Q Consensus 381 ------~-------~~~~~v~~~a~~aL~nl~~~~ 402 (532)
. ....+...-++.++.|++...
T Consensus 323 ~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s 357 (361)
T PF07814_consen 323 SFFCVLSLPNYVPEESSFDILILALGLLINLVEHS 357 (361)
T ss_pred hhcccccccccccccccchHHHHHHHhHHHheeeC
Confidence 1 113456667777777777653
No 224
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.71 E-value=0.48 Score=40.32 Aligned_cols=136 Identities=22% Similarity=0.206 Sum_probs=93.2
Q ss_pred CCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHH-hhcCchHHH
Q 009568 255 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCI-ITYGALPYL 333 (532)
Q Consensus 255 ~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~-~~~~~l~~L 333 (532)
...++++..+.-++..+.+ ....-....+-..+..++...+.+-...++.++..+..+.++....+ ...|+++.+
T Consensus 16 ~~~~~~r~~a~v~l~k~l~----~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l 91 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLD----AAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESL 91 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHH
Confidence 3567788888888887742 22222333344556666666666678888999999988887655444 467999999
Q ss_pred HHHhc--CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc-Cchh-HHHHHHHHHHH
Q 009568 334 LGLLT--HSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN-AEFD-IKKEAAWAISN 397 (532)
Q Consensus 334 ~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~-v~~~a~~aL~n 397 (532)
..++. .. +..++..++.+|+.-|.. .... ..+....++.|-..+.. ++.. +|..|+-+|+.
T Consensus 92 ~~~~~~~~~-~~~~~~~~lell~aAc~d-~~~r-~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 92 LPLASRKSK-DRKVQKAALELLSAACID-KSCR-TFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHHH-CTS--HHHHHHHHHHHHHHTTS-HHHH-HCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHhcccC-CHHHHHHHHHHHHHHHcc-HHHH-HHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 99998 55 778888888888776643 4444 44444578999999854 4555 88888887764
No 225
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.61 E-value=0.82 Score=51.53 Aligned_cols=148 Identities=16% Similarity=0.150 Sum_probs=95.6
Q ss_pred CchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009568 286 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ 365 (532)
Q Consensus 286 ~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 365 (532)
+++|.|..-|.+.+..+|..|+..+|.+......+.. =-...+....+.-+.+. +..||.++.....++...++....
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence 7889999999999999999999999999976553321 00124455666667777 889999999999998877666443
Q ss_pred HHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568 366 AVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 444 (532)
Q Consensus 366 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~ 444 (532)
... +...+- ..+.|+++|.....++..+.. . ...-.+... ++..+-+.+.+....|+..|+..|..+.+.
T Consensus 337 ~~~---~~~~l~--~~~~D~~~rir~~v~i~~~~v--~-~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 337 AST---ILLALR--ERDLDEDVRVRTQVVIVACDV--M-KFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHH---HHHHHH--hhcCChhhhheeeEEEEEeeh--h-HhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 322 112222 122344544333322222211 1 111112222 667777778889999999999999999874
No 226
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.56 E-value=3.5 Score=40.74 Aligned_cols=143 Identities=12% Similarity=0.185 Sum_probs=102.8
Q ss_pred hhHHHHHHHhhc---CCcchhHHHhh-cCchHHHHHHhcCCC--chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHH
Q 009568 304 IPALRTVGNIVT---GDDFQTQCIIT-YGALPYLLGLLTHSH--KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLV 377 (532)
Q Consensus 304 ~~al~~L~nl~~---~~~~~~~~~~~-~~~l~~L~~lL~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~ 377 (532)
+..++++..+.. +......-+++ ..++..|..++.+.. -+.+-..|+.+++.+....|.....+.+.|+++.++
T Consensus 78 K~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L 157 (379)
T PF06025_consen 78 KSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFL 157 (379)
T ss_pred HHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHH
Confidence 445566666666 22334445667 566777888887652 367888999999999998898888888999999999
Q ss_pred HHHh-cC---chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCH-------HHHHHHHHHHHHHHHhhh
Q 009568 378 NLLQ-NA---EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDP-------RIVTVCLEGLENILKVGE 446 (532)
Q Consensus 378 ~ll~-~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~-------~v~~~al~~L~~l~~~~~ 446 (532)
+.+. .+ +.++-...-.+|+.+|. +....+.+.+.+.++.+++++.+++. ++....=.++..|++..+
T Consensus 158 ~~i~~~~i~~s~e~l~~lP~~l~AicL--N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p 235 (379)
T PF06025_consen 158 DAITAKGILPSSEVLTSLPNVLSAICL--NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHP 235 (379)
T ss_pred HHHhccCCCCcHHHHHHHHHHHhHHhc--CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCH
Confidence 9998 43 45666667777888887 56888888899999999999876542 233333345556666555
Q ss_pred hh
Q 009568 447 AE 448 (532)
Q Consensus 447 ~~ 448 (532)
..
T Consensus 236 ~L 237 (379)
T PF06025_consen 236 SL 237 (379)
T ss_pred HH
Confidence 44
No 227
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.33 E-value=0.2 Score=46.28 Aligned_cols=142 Identities=13% Similarity=0.190 Sum_probs=97.7
Q ss_pred hHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009568 288 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAV 367 (532)
Q Consensus 288 l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 367 (532)
+...+..|.+.+|.....++..|..++...++.....+. .++-.+++-+++. ...|-+.||.+++.++..-...+...
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788889999999999999998876644333333 3455566666777 77899999999999987444444443
Q ss_pred HHcCCHHHHHHHHhcC---chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 009568 368 IDAGLVGPLVNLLQNA---EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILK 443 (532)
Q Consensus 368 ~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~ 443 (532)
++ ..+..++... +.-++..|-.+|..++.+.++.. +++.|...+...++.++..+.-++.+...
T Consensus 168 ld----~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------~L~~L~~~~~~~n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 168 LD----DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------LLRKLIPILQHSNPRVRAKAALCFSRCVI 234 (334)
T ss_pred HH----HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHhhhchhhhhhhhccccccce
Confidence 22 2333344433 34588999999999988766543 56677777888888888777666555543
No 228
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.32 E-value=3.2 Score=43.04 Aligned_cols=184 Identities=15% Similarity=0.108 Sum_probs=113.6
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhcC-Ch----hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 009568 120 PRFVEFLMREDYPQLQFEAAWALTNIASG-TS----ENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194 (532)
Q Consensus 120 ~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~-~~----~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 194 (532)
|.|..-|+-.+ ..+|..|+..+.++--- ++ +..+.+++.. ...|..+|.++.+.+|..|+..++.+.+. +
T Consensus 177 p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL~d~~p~VRS~a~~gv~k~~s~---f 251 (1005)
T KOG1949|consen 177 PILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLLEDPYPMVRSTAILGVCKITSK---F 251 (1005)
T ss_pred HHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHHH---H
Confidence 34455566677 89999999999997541 22 3445555533 57788899999999999999888887542 2
Q ss_pred HHHHHhcCCh----HHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 009568 195 RDLVLSQGAL----IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSY 270 (532)
Q Consensus 195 ~~~~~~~~~l----~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~ 270 (532)
-.. +-..++ ..+..-+..++..+++......|..+..++ ........++|.+-..+.++.+.|+..+...|..
T Consensus 252 We~-iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ 328 (1005)
T KOG1949|consen 252 WEM-IPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLK 328 (1005)
T ss_pred HHH-cCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHHH
Confidence 111 112222 333333334455678888888888887763 2233445677777788888889999888888776
Q ss_pred hccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhh
Q 009568 271 LSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 314 (532)
Q Consensus 271 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~ 314 (532)
+-.... ..+.+-=-...++..|..++..+....+..|-+.+
T Consensus 329 ik~vra---~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 329 IKAVRA---AKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred HHhhhh---hhhhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 643211 11222122344555566665555555555555544
No 229
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.25 E-value=6.7 Score=41.46 Aligned_cols=218 Identities=12% Similarity=0.113 Sum_probs=109.8
Q ss_pred hHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHH---HHHHHHH----HHHHhccCChhHHHHHHHhCchH
Q 009568 217 LSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEE---VLTDACW----ALSYLSDGTNDKIQAVIEAGVCP 289 (532)
Q Consensus 217 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~---v~~~a~~----~L~~l~~~~~~~~~~~~~~~~l~ 289 (532)
+-++...+.+|.++...-.........-++|.+-.....+.|+ ..+++.. +|.|...-.++ ++ +++|
T Consensus 629 ~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~----ll--~L~p 702 (978)
T KOG1993|consen 629 PLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPE----LL--LLFP 702 (978)
T ss_pred cHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHH----HH--HHHH
Confidence 3455556778888877654444433333444443333222222 2333322 23333222222 22 5677
Q ss_pred HHHHhhCCCCccchhhHHHHHHHhhc-CCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009568 290 RLVELLGHPSPSVLIPALRTVGNIVT-GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI 368 (532)
Q Consensus 290 ~L~~lL~~~~~~v~~~al~~L~nl~~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 368 (532)
.+..++....... ..++.++..-.- .+.... .-...|+...+..++.+- ..+-....+.++..+...++ ......
T Consensus 703 ~l~~~iE~ste~L-~t~l~Ii~sYilLd~~~fl-~~y~~~i~k~~~~~l~dv-r~egl~avLkiveili~t~~-il~~~~ 778 (978)
T KOG1993|consen 703 HLLYIIEQSTENL-PTVLMIISSYILLDNTVFL-NDYAFGIFKKLNDLLDDV-RNEGLQAVLKIVEILIKTNP-ILGSLL 778 (978)
T ss_pred HHHHHHHhhhhhH-HHHHHHHHHHHhhccHHHH-HHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhhH-HHHhhh
Confidence 7777776544333 233444433221 111111 111236677777777654 44444556666666665544 455566
Q ss_pred HcCCHHHHHHHHhc--CchhHHHHHHHHHHHhhcCCCHHHHHHHHH-cCChHHHH--------hhcC-CCCHHHHHHHHH
Q 009568 369 DAGLVGPLVNLLQN--AEFDIKKEAAWAISNATSGGTHEQIKYLVR-EGCIKPLC--------DLFV-CPDPRIVTVCLE 436 (532)
Q Consensus 369 ~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~l~~L~--------~lL~-~~d~~v~~~al~ 436 (532)
..+++|.++.-+-. +.|.+...-+..++.+.... ++..-.+++ ..-.+.++ .+.+ -.+++-++.-.-
T Consensus 779 ~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n-~~~~msvlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~L 857 (978)
T KOG1993|consen 779 FSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRN-PSLFMSVLQTKNTYDILIAMLIGNWILLFDHINHPKDRKLNTL 857 (978)
T ss_pred cchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcC-hHHHHHHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHH
Confidence 67788877776533 35677777788888877663 333333332 22222222 2233 245666666666
Q ss_pred HHHHHHHhh
Q 009568 437 GLENILKVG 445 (532)
Q Consensus 437 ~L~~l~~~~ 445 (532)
++..++..+
T Consensus 858 alsSll~t~ 866 (978)
T KOG1993|consen 858 ALSSLLRTN 866 (978)
T ss_pred HHHHHhccC
Confidence 677776653
No 230
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.23 E-value=1.4 Score=45.91 Aligned_cols=205 Identities=15% Similarity=0.135 Sum_probs=120.2
Q ss_pred HHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC-CC
Q 009568 221 RNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PS 299 (532)
Q Consensus 221 ~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~ 299 (532)
......|..+... .+.......++|.|+..+.. ....-..+-.+..++...+ +......+++.|...++. ..
T Consensus 291 s~Flk~Ls~~ip~--fp~rv~~~kiLP~L~~el~n--~~~vp~~LP~v~~i~~~~s---~~~~~~~~~p~l~pi~~~~~~ 363 (700)
T KOG2137|consen 291 SSFLKGLSKLIPT--FPARVLFQKILPTLVAELVN--TKMVPIVLPLVLLIAEGLS---QNEFGPKMLPALKPIYSASDP 363 (700)
T ss_pred HHHHHHHHHhhcc--CCHHHHHHhhhhHHHHHhcc--ccccccccchhhhhhhccc---hhhhhhhhhHHHHHHhccCCc
Confidence 3334445444433 23334446777777777633 2233333333444443333 223344678888888874 23
Q ss_pred ccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH
Q 009568 300 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNL 379 (532)
Q Consensus 300 ~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l 379 (532)
..+..-.+.-+--|....+ ..-+...++|.|...+++. +..++..++..+..++..-+ -..+..-++|.+..+
T Consensus 364 ~~~~l~i~e~mdlL~~Kt~---~e~~~~~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l 436 (700)
T KOG2137|consen 364 KQALLFILENMDLLKEKTP---PEEVKEKILPLLYRSLEDS-DVQIQELALQILPTVAESID---VPFVKQAILPRLKNL 436 (700)
T ss_pred ccchhhHHhhHHHHHhhCC---hHHHHHHHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcc
Confidence 3333222222222332222 2234457899999999988 99999999999999876322 123445578888776
Q ss_pred H-hcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568 380 L-QNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 444 (532)
Q Consensus 380 l-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~ 444 (532)
. ...+..++.+++.|+..++...+.. .--..+.++....+..|+.++...+.+..++.-.
T Consensus 437 ~~~tt~~~vkvn~L~c~~~l~q~lD~~-----~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~ 497 (700)
T KOG2137|consen 437 AFKTTNLYVKVNVLPCLAGLIQRLDKA-----AVLDELLPILKCIKTRDPAIVMGFLRIYEALALI 497 (700)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Confidence 4 3457899999999999887322111 1112355666677788999888888877776543
No 231
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=94.21 E-value=4.4 Score=37.73 Aligned_cols=218 Identities=15% Similarity=0.158 Sum_probs=120.6
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHH
Q 009568 122 FVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVL 199 (532)
Q Consensus 122 Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 199 (532)
|=..|.+++ +.+|..|+.+|..+...-+.. .+...-+..|+.++.+ .+......++.++..+.....-....
T Consensus 4 Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-- 77 (262)
T PF14500_consen 4 LGEYLTSED-PIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-- 77 (262)
T ss_pred hhhhhCCCC-HHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh--
Confidence 445677877 899999999999987644422 1222334556655443 45555555566666665322211111
Q ss_pred hcCChHHHHHHhh-hhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcC-CCHHHHHHHHHHHHHhccCChh
Q 009568 200 SQGALIPLLAQLN-ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS-NDEEVLTDACWALSYLSDGTND 277 (532)
Q Consensus 200 ~~~~l~~L~~ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~ 277 (532)
...++..+.+... +......+..+...+..+.......-.......+..+++.+.. .||.-...+...+..+...-+-
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 1112223332221 1223455666777777776653211122234566667777764 4888777777777666543321
Q ss_pred HHHHHHHhCchHHHHHhhC--------C-C-Cc-c-chhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhH
Q 009568 278 KIQAVIEAGVCPRLVELLG--------H-P-SP-S-VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSI 345 (532)
Q Consensus 278 ~~~~~~~~~~l~~L~~lL~--------~-~-~~-~-v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v 345 (532)
....+.+...+. . + ++ . .+..--..|.+....++.. ..-++|.|+.-|.++ .+.+
T Consensus 158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~-~~~~ 224 (262)
T PF14500_consen 158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDST-SPSV 224 (262)
T ss_pred -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCC-CcHH
Confidence 123333333321 1 1 21 1 2333334454444444422 235789999999998 8899
Q ss_pred HHHHHHHHHHHhc
Q 009568 346 KKEACWTISNITA 358 (532)
Q Consensus 346 ~~~a~~~L~nl~~ 358 (532)
+..++.+|..++.
T Consensus 225 K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 225 KLDSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998876
No 232
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=94.16 E-value=4.9 Score=37.44 Aligned_cols=224 Identities=14% Similarity=0.096 Sum_probs=133.8
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh-hhhhHHHHHHHHHhhhccCCCCCCCccc
Q 009568 163 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE-RAKLSMLRNATWTLSNFCRGKPQPPFDQ 241 (532)
Q Consensus 163 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~ 241 (532)
..|-..|.++++.+|..|+.+|+.+...-+.. .+...-+..|+..+.. -.|......++.++..|.+... .....
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~-~~~~~ 77 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN-FSPES 77 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC-CChhh
Confidence 34556788899999999999999987655431 1222235555555432 1345555555666666664432 11122
Q ss_pred ccchHHHHHHhhc--CCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC-CCccchhhHHHHHHHhhcCCc
Q 009568 242 VRPALPALAQLVH--SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDD 318 (532)
Q Consensus 242 ~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~ 318 (532)
...++..+.+-.. +-....|..+...+..+.......... ...+++..+++.+.. .||.....+...+..+....+
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 2333333333222 223557888888888887665433322 233677778887755 578888888888887776554
Q ss_pred chhHHHhhcCchHHHHHHhc--------CCC-ch--hHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhH
Q 009568 319 FQTQCIITYGALPYLLGLLT--------HSH-KK--SIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDI 387 (532)
Q Consensus 319 ~~~~~~~~~~~l~~L~~lL~--------~~~-~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 387 (532)
. ....+-+...+. .+. ++ -.+..-...|.++...++... .-.+|.|++-|.++.+.+
T Consensus 157 ~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~ 224 (262)
T PF14500_consen 157 I-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSV 224 (262)
T ss_pred c-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHH
Confidence 1 223333443332 111 22 234555566666665555432 226899999999999999
Q ss_pred HHHHHHHHHHhhcCCC
Q 009568 388 KKEAAWAISNATSGGT 403 (532)
Q Consensus 388 ~~~a~~aL~nl~~~~~ 403 (532)
+..++.+|..++..-.
T Consensus 225 K~D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 225 KLDSLQTLKACIENYG 240 (262)
T ss_pred HHHHHHHHHHHHHHCC
Confidence 9999999998876433
No 233
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=93.96 E-value=2.3 Score=42.88 Aligned_cols=266 Identities=11% Similarity=0.079 Sum_probs=128.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC----CCCCcccccchHH
Q 009568 172 PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK----PQPPFDQVRPALP 247 (532)
Q Consensus 172 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~----~~~~~~~~~~~l~ 247 (532)
+|+-+....++++..+-.+.......++.. ....+.....+..++..-.....+++.+.+.. +.........++|
T Consensus 42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P 120 (435)
T PF03378_consen 42 ENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP 120 (435)
T ss_dssp C-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 567777777777776654444443343332 22333333334456766666666666655442 2222345577889
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCCh-hHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhh
Q 009568 248 ALAQLVHSNDEEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT 326 (532)
Q Consensus 248 ~L~~lL~~~d~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~ 326 (532)
.+..+|+.+=.+..-++...++.+.+..+ ....... ..+++.|+.-.-.....-.-+..+.|..+....+.. +..
T Consensus 121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y-~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~---i~~ 196 (435)
T PF03378_consen 121 PFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAY-KQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSF---IVA 196 (435)
T ss_dssp HHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTT-GGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHH-HHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchh---hcc
Confidence 99999988878888888888888875544 1111000 022222222111112222334455666665543322 222
Q ss_pred cC----chHHHHHHhcCCCchhHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHHhcC-chhHHHHHHHHHHHhhc
Q 009568 327 YG----ALPYLLGLLTHSHKKSIKKEACWTISNITAGN-RDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATS 400 (532)
Q Consensus 327 ~~----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~ 400 (532)
.+ ++..+-+++.+. . --.++...|..+...- .+..+..+.. ++..++.-|++. ..+..+..+..++.++.
T Consensus 197 ~~~l~~iLgvFQkLi~sk-~--~D~~gF~LL~~iv~~~p~~~l~~yl~~-I~~lll~RLq~skT~kf~~~fv~F~~~~~~ 272 (435)
T PF03378_consen 197 NNQLEPILGVFQKLIASK-A--NDHYGFDLLESIVENLPPEALEPYLKQ-IFTLLLTRLQSSKTEKFVKRFVVFLSLFAI 272 (435)
T ss_dssp -S-CHHHHHHHHHHHT-T-T--CHHHHHHHHHHHHHHS-HHHHGGGHHH-HHHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHCCC-C--cchHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHhhCCcHHHHHHHHHHHHHHHH
Confidence 23 334444566554 2 2245667777776533 3334444432 555666666643 56666666666666655
Q ss_pred CCCHHHHHHHHH---cCChHHHHhh-----cC-CCCHHHHHHHHHHHHHHHHhhh
Q 009568 401 GGTHEQIKYLVR---EGCIKPLCDL-----FV-CPDPRIVTVCLEGLENILKVGE 446 (532)
Q Consensus 401 ~~~~~~~~~l~~---~~~l~~L~~l-----L~-~~d~~v~~~al~~L~~l~~~~~ 446 (532)
..+++.....++ .|+...+..- ++ -..+.=++.+.-++.+++...+
T Consensus 273 ~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es~ 327 (435)
T PF03378_consen 273 KYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCESP 327 (435)
T ss_dssp HH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSST
T ss_pred HcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhccH
Confidence 434444444443 2333333321 11 1233345666667777775443
No 234
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=93.91 E-value=6.6 Score=38.10 Aligned_cols=166 Identities=18% Similarity=0.192 Sum_probs=119.2
Q ss_pred HHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHc-CC-HHHHHHHHhcC-----c--------hh
Q 009568 323 CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDA-GL-VGPLVNLLQNA-----E--------FD 386 (532)
Q Consensus 323 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~-~~-i~~L~~ll~~~-----~--------~~ 386 (532)
.+++.. +..+.+.|.+. .+.+...+...|..++. ........++.. ++ .+.+..++... . +.
T Consensus 52 ~iL~~~-~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~s 129 (330)
T PF11707_consen 52 SILQNH-LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPS 129 (330)
T ss_pred HHHHHH-HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcC
Confidence 344433 78899999988 78888899999999998 666666666642 33 44555555321 1 28
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHH-cCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHH
Q 009568 387 IKKEAAWAISNATSGGTHEQIKYLVR-EGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLV 465 (532)
Q Consensus 387 v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 465 (532)
+|...+..+..+...+++.....+++ .+.+..+..-+..++++++..++++|..-+-..+..... .-+..|
T Consensus 130 iR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~--------~K~~~f 201 (330)
T PF11707_consen 130 IRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRS--------TKCKLF 201 (330)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChh--------hhhhhc
Confidence 99999998888888888887777764 577889999999988899999999998644333332211 112333
Q ss_pred HHhccHHHHHHHhcCCCH----HHHHHHHHHHHHhCCC
Q 009568 466 EEAEGLEKIENLQSHDNN----EIYEKAVKILETYWLE 499 (532)
Q Consensus 466 ~~~g~~~~l~~L~~~~~~----~v~~~a~~il~~~~~~ 499 (532)
. ...+.+|-.|-...++ .+.+.+.+.+..+...
T Consensus 202 n-~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 202 N-EWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred C-HHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence 3 4467888888888777 8999999999988753
No 235
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=93.86 E-value=5.1 Score=47.46 Aligned_cols=268 Identities=9% Similarity=0.068 Sum_probs=143.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCc---hhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHH
Q 009568 172 PSDDVREQAVWALGNVAGDSP---RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPA 248 (532)
Q Consensus 172 ~~~~v~~~a~~~L~nl~~~~~---~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~ 248 (532)
++..+...|+..|..++...- +....-.+..++.++..++..+.+.+++..++.++.++.......-..-...++..
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~V 1228 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMV 1228 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 455666666666666653211 11111223456788888887777889999999999988766422112223344444
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHH--hC----chHHHHHhhCCC-CccchhhHHHHHHHhhcCC----
Q 009568 249 LAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIE--AG----VCPRLVELLGHP-SPSVLIPALRTVGNIVTGD---- 317 (532)
Q Consensus 249 L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~----~l~~L~~lL~~~-~~~v~~~al~~L~nl~~~~---- 317 (532)
+.......++.+...+..++..+....- ..+.. .+ .+..+..+.... +..+-..|+..|.+++..-
T Consensus 1229 Ls~aa~d~~e~iV~lAFetl~~I~~d~f---~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~ 1305 (1780)
T PLN03076 1229 FTTAAYDDHKNIVLLAFEIIEKIIREYF---PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGD 1305 (1780)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHhhh---hhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcc
Confidence 4444445677888888888776653211 11110 12 233333333332 4566677777777552100
Q ss_pred c-----------------------chhH-----HHhhcCchHHHH---HHhcCCCchhHHHHHHHHHHHHhc--C---CH
Q 009568 318 D-----------------------FQTQ-----CIITYGALPYLL---GLLTHSHKKSIKKEACWTISNITA--G---NR 361 (532)
Q Consensus 318 ~-----------------------~~~~-----~~~~~~~l~~L~---~lL~~~~~~~v~~~a~~~L~nl~~--~---~~ 361 (532)
- .... .......+|.|. .+..+. +++||..|+.+|-.+.. | ++
T Consensus 1306 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~~Fs~ 1384 (1780)
T PLN03076 1306 LGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGHLFSL 1384 (1780)
T ss_pred ccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhccCCH
Confidence 0 0000 000112344443 334555 89999999999887764 1 23
Q ss_pred HHHHHHHHcCCHHHHHHHHhcC------------------c--------hhHHHHHHHHHHHhhcCCCHHHHHHHHHcCC
Q 009568 362 DQIQAVIDAGLVGPLVNLLQNA------------------E--------FDIKKEAAWAISNATSGGTHEQIKYLVREGC 415 (532)
Q Consensus 362 ~~~~~l~~~~~i~~L~~ll~~~------------------~--------~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~ 415 (532)
+....++. +++.+++..+... + .+....|+..+.++...- -+.+..++ .++
T Consensus 1385 ~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~f-Fd~L~~~L-~~~ 1461 (1780)
T PLN03076 1385 PLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKF-YPTVNPLL-KKV 1461 (1780)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHH
Confidence 33333444 3555555555421 0 122233333333333310 01122222 245
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 009568 416 IKPLCDLFVCPDPRIVTVCLEGLENILKVGE 446 (532)
Q Consensus 416 l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 446 (532)
+..|..++..++..+......+|.+++..+.
T Consensus 1462 l~ll~~ci~q~n~~la~ig~~~l~~li~~ng 1492 (1780)
T PLN03076 1462 LMLLVSFIKRPHQSLAGIGIAAFVRLMSNAG 1492 (1780)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHHHhh
Confidence 6667777778889999999999999886544
No 236
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=93.85 E-value=1.3 Score=43.59 Aligned_cols=128 Identities=19% Similarity=0.176 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhC------CCCccchhhHHHHHHHhhcCCcc------------
Q 009568 258 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG------HPSPSVLIPALRTVGNIVTGDDF------------ 319 (532)
Q Consensus 258 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~------~~~~~v~~~al~~L~nl~~~~~~------------ 319 (532)
..-+..|+..+..++.........++. ..+..++. ..++.-+..|++.++.++.....
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~----~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v 300 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILM----QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELV 300 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccc
Confidence 345677777888887543332222221 22223332 34667788899999999875532
Q ss_pred hhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHH
Q 009568 320 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAI 395 (532)
Q Consensus 320 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 395 (532)
....++...++|-|. --.+. .|-++..|++.+..+-..-+. +.+. +++|.++..|.+++.-|...|+.|+
T Consensus 301 ~v~~Ff~~~v~peL~-~~~~~-~piLka~aik~~~~Fr~~l~~--~~l~--~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 301 DVVDFFSQHVLPELQ-PDVNS-HPILKADAIKFLYTFRNQLPK--EQLL--QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -HHHHHHHHTCHHHH--SS-S--HHHHHHHHHHHHHHGGGS-H--HHHH--HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred cHHHHHHHHhHHHhc-ccCCC-CcchHHHHHHHHHHHHhhCCH--HHHH--HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 123334445555554 11133 678999999999998764332 1222 3789999999999999999998875
No 237
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.84 E-value=11 Score=44.03 Aligned_cols=274 Identities=16% Similarity=0.143 Sum_probs=143.9
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC-CCCCcc
Q 009568 162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFD 240 (532)
Q Consensus 162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~ 240 (532)
+..++..|..+++..+..+..+++.++...+.. .. -.+..+.++.-+....++-.+.--..++..+-++. ......
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~-~f--~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA-PF--VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc-ch--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 344455566678888888888888887543321 11 12235566666645556666666667777777665 444555
Q ss_pred cccchHHHHHHhhcCC-CHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC-CC--ccchhh-----------
Q 009568 241 QVRPALPALAQLVHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PS--PSVLIP----------- 305 (532)
Q Consensus 241 ~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~--~~v~~~----------- 305 (532)
.....+..+..+-+++ ++.|+..++.++..+.+.........+. ..+..+..+|.. +. .++...
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence 5566677777777665 5699999999999998665444332222 333333444432 21 111111
Q ss_pred --HHHHHHHhhcCCcc-hhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc
Q 009568 306 --ALRTVGNIVTGDDF-QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN 382 (532)
Q Consensus 306 --al~~L~nl~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~ 382 (532)
...++|+=..++.. ..-.-+..-.+-...-++.++ ++.++.++..++-++--..+.+... .-+|+.|+.++.+
T Consensus 1034 ~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSLLSS 1109 (2067)
T ss_pred HHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHHhcc
Confidence 12222222222221 011111222233333344555 8889999999988875433321110 1145566665555
Q ss_pred CchhHHHHHHHHHHHhhcCCCHHHHH-----------------HHH-HcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHH
Q 009568 383 AEFDIKKEAAWAISNATSGGTHEQIK-----------------YLV-REGCIKPLCDLFV-CPDPRIVTVCLEGLENILK 443 (532)
Q Consensus 383 ~~~~v~~~a~~aL~nl~~~~~~~~~~-----------------~l~-~~~~l~~L~~lL~-~~d~~v~~~al~~L~~l~~ 443 (532)
...-.|+....++..+......+.+. ... +.|+--.+..+|+ ..|.+.+..+++.+.+++.
T Consensus 1110 ~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~~~ 1189 (2067)
T KOG1822|consen 1110 SYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRMLN 1189 (2067)
T ss_pred hhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 43334343333333333221111100 011 3344445556665 4677788888888888554
No 238
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.81 E-value=1.7 Score=38.29 Aligned_cols=146 Identities=16% Similarity=0.151 Sum_probs=94.1
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 154 (532)
-++.+++...+++..++..|+..+..++...=-.|.. .+|.++.+..+++ +.++..|...+..+....+....
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHH
Confidence 3678888888999999999999999998764223332 6899999999988 99999999999999886655444
Q ss_pred HHHhCCChHHHHHhhCC--CCHH--H---HHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhh-------hhHHH
Q 009568 155 VVIDHGAVPIFVKLLAS--PSDD--V---REQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA-------KLSML 220 (532)
Q Consensus 155 ~i~~~g~i~~L~~lL~~--~~~~--v---~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~-------~~~~~ 220 (532)
.-...| +..-..+-.. .+.. . ....+..+..+...+...|..+ +..+++.+.... ...-.
T Consensus 82 ~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l 155 (187)
T PF12830_consen 82 SRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDL 155 (187)
T ss_pred HHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHH
Confidence 433333 2222222111 1111 1 4555666777777666666654 566676664321 23344
Q ss_pred HHHHHHhhhccCC
Q 009568 221 RNATWTLSNFCRG 233 (532)
Q Consensus 221 ~~a~~~L~~L~~~ 233 (532)
..++++..||+.-
T Consensus 156 ~~~~Fla~nLA~l 168 (187)
T PF12830_consen 156 DFLLFLAENLATL 168 (187)
T ss_pred HHHHHHHHHHhcC
Confidence 5555555566554
No 239
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=93.69 E-value=0.95 Score=39.78 Aligned_cols=106 Identities=16% Similarity=0.110 Sum_probs=73.4
Q ss_pred hCCCCccchhhHHHHHHHhhcCCcchhHHHhh----------------cCchHHHHHHhcCC-----CchhHHHHHHHHH
Q 009568 295 LGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT----------------YGALPYLLGLLTHS-----HKKSIKKEACWTI 353 (532)
Q Consensus 295 L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~----------------~~~l~~L~~lL~~~-----~~~~v~~~a~~~L 353 (532)
+.+++......++..|+|++.... ....+++ ...+..|+..+..+ ....-....+.++
T Consensus 4 i~~~~~~~adl~~MLLsNlT~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl 82 (192)
T PF04063_consen 4 ITDPKSPLADLACMLLSNLTRSDS-GCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVL 82 (192)
T ss_pred ecCCCcchHHHHHHHHHHhccchH-HHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHH
Confidence 344556677778888999987544 3332322 23567777777551 1334556788999
Q ss_pred HHHhcCCHHHHHHHHHc--CC--HHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009568 354 SNITAGNRDQIQAVIDA--GL--VGPLVNLLQNAEFDIKKEAAWAISNATSGG 402 (532)
Q Consensus 354 ~nl~~~~~~~~~~l~~~--~~--i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 402 (532)
+|++.. ++.++.+++. +. +..|+.++++.+..-|.-++.+|.|++...
T Consensus 83 ~NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~ 134 (192)
T PF04063_consen 83 ANLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDT 134 (192)
T ss_pred HHhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccH
Confidence 999875 6677777743 34 778888888887777888999999999853
No 240
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=93.57 E-value=4.2 Score=37.23 Aligned_cols=203 Identities=16% Similarity=0.101 Sum_probs=113.9
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHH
Q 009568 205 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIE 284 (532)
Q Consensus 205 ~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~ 284 (532)
+.|+.-+.+..++++....+.+|..++..+ . .....++..+..+...+..+...-+...+..+....+...
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~---~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f----- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHK---N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF----- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccC---c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-----
Confidence 344444556778899999999999999875 1 3345566777777777777665556666666655444222
Q ss_pred hCchHHHHHh-----h---C--CCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHh-cCCCchhHHHHHHHHH
Q 009568 285 AGVCPRLVEL-----L---G--HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLL-THSHKKSIKKEACWTI 353 (532)
Q Consensus 285 ~~~l~~L~~l-----L---~--~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~~v~~~a~~~L 353 (532)
+.+..++.. . . +...........++..+|...++... .+++.+..+| .+. ++.++..+...|
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-----~ll~~ls~~L~~~~-~~~~~alale~l 146 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-----DLLPLLSGCLNQSC-DEVAQALALEAL 146 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-----HHHHHHHHHHhccc-cHHHHHHHHHHH
Confidence 223333332 1 1 11233444445677777776665222 4577888888 666 888899999999
Q ss_pred HHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-chhHHHHHHHHHHHhhcCC-CHHHHHHHHHcCChHHHHhhcCCCCHH
Q 009568 354 SNITAGNRDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATSGG-THEQIKYLVREGCIKPLCDLFVCPDPR 429 (532)
Q Consensus 354 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~-~~~~~~~l~~~~~l~~L~~lL~~~d~~ 429 (532)
..++...--.+.. ....+..-+..+ .+.+.+..+..+..+..+. +.+.... ....++..+-++..+.+.+
T Consensus 147 ~~Lc~~~vvd~~s-----~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~-~~~~~l~~lW~~~~~~~~~ 218 (234)
T PF12530_consen 147 APLCEAEVVDFYS-----AWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEE-LKRQILQLLWEYTSSSDVN 218 (234)
T ss_pred HHHHHHhhccHHH-----HHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhH-HHHHHHHHHHhhccccccc
Confidence 9998421111111 122233333332 4455444333333332222 2233333 2335677777777766643
No 241
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.52 E-value=1.9 Score=44.83 Aligned_cols=173 Identities=14% Similarity=0.107 Sum_probs=104.2
Q ss_pred cccchHHHHHHhhcCCCH-HHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcc
Q 009568 241 QVRPALPALAQLVHSNDE-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF 319 (532)
Q Consensus 241 ~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~ 319 (532)
....++|.|...++..++ ++....+.-+--|...-+ ..-+...+++.|..-+.+.+..++..++..+...+..-|.
T Consensus 346 ~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~---~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~ 422 (700)
T KOG2137|consen 346 FGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTP---PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV 422 (700)
T ss_pred hhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCC---hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH
Confidence 345667777777774332 222111111111111111 1123347788888888999999999999999999876552
Q ss_pred hhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009568 320 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT 399 (532)
Q Consensus 320 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 399 (532)
..+..-++|.|..+.....+..++..++-|++-+.. .++...-...+..+...+...++.+......+..++.
T Consensus 423 ---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q----~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 423 ---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ----RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred ---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 345667888888876555478899999999998872 1222111123455566666678888887777777776
Q ss_pred cCCCHHHHHHHHHcCChHHHHhhcCC
Q 009568 400 SGGTHEQIKYLVREGCIKPLCDLFVC 425 (532)
Q Consensus 400 ~~~~~~~~~~l~~~~~l~~L~~lL~~ 425 (532)
...... ..+....+++.++-+...
T Consensus 496 ~~~~~g--~ev~~~~VlPlli~ls~~ 519 (700)
T KOG2137|consen 496 LIIYSG--VEVMAENVLPLLIPLSVA 519 (700)
T ss_pred hhcccc--eeeehhhhhhhhhhhhhc
Confidence 532211 222334566666655543
No 242
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.49 E-value=1.2 Score=46.11 Aligned_cols=186 Identities=12% Similarity=0.085 Sum_probs=115.8
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhcc--CCh---hHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcc
Q 009568 245 ALPALAQLVHSNDEEVLTDACWALSYLSD--GTN---DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF 319 (532)
Q Consensus 245 ~l~~L~~lL~~~d~~v~~~a~~~L~~l~~--~~~---~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~ 319 (532)
.-|.|.+-|+..+..|+.+|+..+.++-- +++ +..+.+++ .=...+..+|.++-+.+|..|..-+..+.+..
T Consensus 175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f-- 251 (1005)
T KOG1949|consen 175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKF-- 251 (1005)
T ss_pred HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH--
Confidence 33567778888999999999999988752 211 22344444 34677889999999999999988777776522
Q ss_pred hhHHHhhcC----chHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHH
Q 009568 320 QTQCIITYG----ALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAI 395 (532)
Q Consensus 320 ~~~~~~~~~----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 395 (532)
..++... ++..+..-+.......||-.....|-.+...... ..+++. ++|.|=..|.+....||..+...|
T Consensus 252 --We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s--h~~le~-~Lpal~~~l~D~se~VRvA~vd~l 326 (1005)
T KOG1949|consen 252 --WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS--HPLLEQ-LLPALRYSLHDNSEKVRVAFVDML 326 (1005)
T ss_pred --HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc--hhHHHH-HHHhcchhhhccchhHHHHHHHHH
Confidence 1233333 3333333333332567888888888887764221 233333 566777778888889999998888
Q ss_pred HHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 009568 396 SNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL 442 (532)
Q Consensus 396 ~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~ 442 (532)
..+-... ...+..---.+.++.-|..++..+....+..|.+.+
T Consensus 327 l~ik~vr----a~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 327 LKIKAVR----AAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred HHHHhhh----hhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 7774321 111122223556666676666666555555444443
No 243
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.42 E-value=0.86 Score=46.00 Aligned_cols=99 Identities=17% Similarity=0.169 Sum_probs=73.2
Q ss_pred CchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc--CCHHH
Q 009568 286 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA--GNRDQ 363 (532)
Q Consensus 286 ~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~ 363 (532)
+++.+++..+.+++..++..++.+|+-++..-.+ .+..+-++++..|..-+-+. .+.||.+|..+|+.+-. ++++.
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DR-E~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDR-EKAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhccCChHH
Confidence 6777788888889999999999999988864442 33445558888888888777 88999999999999865 44443
Q ss_pred HHHHHHcCCHHHHHHHHhcC-chhHHHHHHH
Q 009568 364 IQAVIDAGLVGPLVNLLQNA-EFDIKKEAAW 393 (532)
Q Consensus 364 ~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~ 393 (532)
. +...|..+++.+ +.+||+.|+.
T Consensus 169 ~-------~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 169 R-------IVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred H-------HHHHHHHHHhcCcHHHHHHHHHH
Confidence 2 344566666654 5678876653
No 244
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.42 E-value=1.9 Score=43.36 Aligned_cols=157 Identities=13% Similarity=0.101 Sum_probs=111.0
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCC---HHHHHHHHHHHHHHhcCChh
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDY---PQLQFEAAWALTNIASGTSE 151 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~---~~~~~~a~~~L~~l~~~~~~ 151 (532)
....+.+.+.+++...+..|+..+..+... ...+.+++...++..|.+++.++.. .++...++.++..+-...-
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d--~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv- 160 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLD--PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV- 160 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhcccc--HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-
Confidence 457788899999999999999988887653 4558889999999999999988751 3555555556555544221
Q ss_pred hHHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhh
Q 009568 152 NTKVVIDHGAVPIFVKLLA--SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN 229 (532)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~ 229 (532)
..-..+...+|.....+.. ..+..+-..|+..|-++...++..+..+.+.-.+..|+..+ +..+..+...+...+..
T Consensus 161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~na 239 (713)
T KOG2999|consen 161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNA 239 (713)
T ss_pred eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence 1111122233344444432 24566778888899998887777888888888999999999 67777777778777777
Q ss_pred ccCCCC
Q 009568 230 FCRGKP 235 (532)
Q Consensus 230 L~~~~~ 235 (532)
+....+
T Consensus 240 l~~~a~ 245 (713)
T KOG2999|consen 240 LFRKAP 245 (713)
T ss_pred HHhhCC
Confidence 776654
No 245
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.31 E-value=0.36 Score=36.65 Aligned_cols=84 Identities=18% Similarity=0.241 Sum_probs=63.9
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 154 (532)
.+...+..|.++.+.+|-.|+..|++++... + ....-..+++..+...|++++ +-+-..|+.+|..++...++
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~-~--~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~--- 76 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESK-S--EPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPD--- 76 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcC-C--cchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChH---
Confidence 4677888899999999999999999999864 3 111223467888899999998 89999999999999985443
Q ss_pred HHHhCCChHHHHHhhC
Q 009568 155 VVIDHGAVPIFVKLLA 170 (532)
Q Consensus 155 ~i~~~g~i~~L~~lL~ 170 (532)
.+++.|++...
T Consensus 77 -----~vl~~L~~~y~ 87 (92)
T PF10363_consen 77 -----EVLPILLDEYA 87 (92)
T ss_pred -----HHHHHHHHHHh
Confidence 23455655443
No 246
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=93.23 E-value=9.5 Score=37.76 Aligned_cols=267 Identities=12% Similarity=0.050 Sum_probs=135.6
Q ss_pred CHHHHHHHHHHHHHhhCCCchhHHHHHhcC---ChHHHHHHhh-hhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHH
Q 009568 173 SDDVREQAVWALGNVAGDSPRCRDLVLSQG---ALIPLLAQLN-ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPA 248 (532)
Q Consensus 173 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~---~l~~L~~ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~ 248 (532)
+..+..+|+.+|+.+..+..- -..+-... ++...+..+. .+.+..+....+|+|+.=--............++..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i-~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEI-VSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA 137 (372)
T ss_pred chHHHHHHHHHHHHHHccHHH-HhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence 678999999999998654322 11111111 2333444442 334567777788887652222111111112223333
Q ss_pred HHHhhc-CCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhc--CCcc-hh---
Q 009568 249 LAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT--GDDF-QT--- 321 (532)
Q Consensus 249 L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~--~~~~-~~--- 321 (532)
+..+-+ -+...+....+.++.++....+.....-.+ .-++.++..+-+....++..|..++..+.. +... ..
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~ 216 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHAD-IWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSV 216 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence 333332 346678888999999998776654332222 357777777777777777776555544432 1111 11
Q ss_pred HHHhhc----C-----chHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHcCCHHHHHHHHhcCchhHHHHH
Q 009568 322 QCIITY----G-----ALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD-QIQAVIDAGLVGPLVNLLQNAEFDIKKEA 391 (532)
Q Consensus 322 ~~~~~~----~-----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 391 (532)
...++. + +.+.+..++.+. +.....--.|..--+.-+++. .-...+ ...+...-..+.++++.+|..|
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~d~~~k~~A 294 (372)
T PF12231_consen 217 LEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSSDPQVKIQA 294 (372)
T ss_pred HHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCCCHHHHHHH
Confidence 111221 2 223366666663 333333334443333323221 111111 1234444456677899999999
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHcCChHHHHhhcCCC-CH----HHHHHHHHHHHHHHHh
Q 009568 392 AWAISNATSGG--THEQIKYLVREGCIKPLCDLFVCP-DP----RIVTVCLEGLENILKV 444 (532)
Q Consensus 392 ~~aL~nl~~~~--~~~~~~~l~~~~~l~~L~~lL~~~-d~----~v~~~al~~L~~l~~~ 444 (532)
..|-..++... +.......+.- +..++...++.. .. .+...++..+.+++-+
T Consensus 295 ~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~ 353 (372)
T PF12231_consen 295 FKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY 353 (372)
T ss_pred HHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence 88777766421 11111111111 234444445432 22 6777888888888744
No 247
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=93.19 E-value=6.7 Score=35.91 Aligned_cols=140 Identities=24% Similarity=0.220 Sum_probs=92.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHH
Q 009568 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198 (532)
Q Consensus 119 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 198 (532)
+|.|+.-+....++..+...+.+|..++..+...... ++..|..+...+....+..+.+.+..+...++..-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 5566664554445999999999999999844222222 24566666666667776677788888765544321
Q ss_pred HhcCChHHHHHHh---------hhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhh-cCCCHHHHHHHHHHH
Q 009568 199 LSQGALIPLLAQL---------NERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV-HSNDEEVLTDACWAL 268 (532)
Q Consensus 199 ~~~~~l~~L~~ll---------~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L 268 (532)
+.+..++..+ ..+...+.......++..+|...|. ....+++.+..++ ++.++.++..++.++
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 2344444331 0122334445556788888887655 4567788888888 788888999999999
Q ss_pred HHhcc
Q 009568 269 SYLSD 273 (532)
Q Consensus 269 ~~l~~ 273 (532)
..++.
T Consensus 147 ~~Lc~ 151 (234)
T PF12530_consen 147 APLCE 151 (234)
T ss_pred HHHHH
Confidence 99983
No 248
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=93.13 E-value=9.2 Score=37.84 Aligned_cols=307 Identities=16% Similarity=0.145 Sum_probs=157.0
Q ss_pred cCCChHHHHHHHHHHHHHhcCCCC-CchhHhhhCCcHHHHHHhhc----C------CCCHHHHHHHHHHHHHHhcCChhh
Q 009568 84 WSDDSSLQLEATTQFRKLLSIERS-PPIEEVIQSGVVPRFVEFLM----R------EDYPQLQFEAAWALTNIASGTSEN 152 (532)
Q Consensus 84 ~s~~~~~~~~a~~~l~~l~~~~~~-~~~~~~i~~g~i~~Lv~lL~----~------~~~~~~~~~a~~~L~~l~~~~~~~ 152 (532)
.+.+...+..|-..|.+.+....+ +....+.+ -++.|+++++ . +.+..+..+|+.+|+.+.. +++.
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~-~~~i 79 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLY-HPEI 79 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHc-cHHH
Confidence 345556677777777777765433 33333332 3455555443 1 1126888999999999887 4544
Q ss_pred HHHHHhCC---ChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh----hhhhHHHHHH
Q 009568 153 TKVVIDHG---AVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE----RAKLSMLRNA 223 (532)
Q Consensus 153 ~~~i~~~g---~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~----~~~~~~~~~a 223 (532)
...+-+.- ++...+..+.+ .+..+...++|+|..--. + ..++....+..++..+.. -.+..+....
T Consensus 80 ~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f-~----~~~~~~~~~~~l~~~l~~i~~~~~s~si~~er 154 (372)
T PF12231_consen 80 VSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKF-S----PKIMTSDRVERLLAALHNIKNRFPSKSIISER 154 (372)
T ss_pred HhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-C----CcccchhhHHHHHHHHHHhhccCCchhHHHHH
Confidence 44333221 33445555544 345677777777765321 1 123344445555555421 2345677777
Q ss_pred HHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhcc--CChhHHH----HHHHh----C-----ch
Q 009568 224 TWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSD--GTNDKIQ----AVIEA----G-----VC 288 (532)
Q Consensus 224 ~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~--~~~~~~~----~~~~~----~-----~l 288 (532)
+.++.+|....|..-......-+|.++..+-+....++..|...+..+.. +...... ...+. + +.
T Consensus 155 L~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 234 (372)
T PF12231_consen 155 LNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYC 234 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHH
Confidence 77888877765433333334456677666666666676665555444331 1111111 11111 1 33
Q ss_pred HHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc---CCHHHHH
Q 009568 289 PRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA---GNRDQIQ 365 (532)
Q Consensus 289 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~~ 365 (532)
+.|..++.+.+.....+-+|..--+.-+......--.-...+...-..++++ ++.+|..|..+-..+.. .++....
T Consensus 235 ~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy~~~~~~~~~~ 313 (372)
T PF12231_consen 235 ERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIYASNPNELTSP 313 (372)
T ss_pred HHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcCCccccH
Confidence 3455566663444443434443333323321110111124556666677888 99999988776665543 2222222
Q ss_pred HHHHcCCHHHHHHHHhcC-ch----hHHHHHHHHHHHhhc
Q 009568 366 AVIDAGLVGPLVNLLQNA-EF----DIKKEAAWAISNATS 400 (532)
Q Consensus 366 ~l~~~~~i~~L~~ll~~~-~~----~v~~~a~~aL~nl~~ 400 (532)
..+.. +..++...+... .. +++..+...++++..
T Consensus 314 k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 314 KRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred HHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence 22222 222333334432 33 566777777777654
No 249
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=93.10 E-value=2.3 Score=41.94 Aligned_cols=119 Identities=13% Similarity=0.171 Sum_probs=89.6
Q ss_pred HHHHHHHHhc--CCCCCchhHhhh-CCcHHHHHHhhcCCCC--HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh
Q 009568 94 ATTQFRKLLS--IERSPPIEEVIQ-SGVVPRFVEFLMREDY--PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL 168 (532)
Q Consensus 94 a~~~l~~l~~--~~~~~~~~~~i~-~g~i~~Lv~lL~~~~~--~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 168 (532)
-++.+.++.. .......+.+++ ..++..|..++.+... +.+-..|+.++..+....|.....+.+.|+++.+++.
T Consensus 80 lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~ 159 (379)
T PF06025_consen 80 LLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDA 159 (379)
T ss_pred HHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHH
Confidence 3344445554 222344555677 5667777777776542 6888899999999999899999999999999999998
Q ss_pred hC-C---CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh
Q 009568 169 LA-S---PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE 213 (532)
Q Consensus 169 L~-~---~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~ 213 (532)
+. . ++.++....-.+|+.||-.... .+.+.+.+.+..+++++..
T Consensus 160 i~~~~i~~s~e~l~~lP~~l~AicLN~~G-l~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 160 ITAKGILPSSEVLTSLPNVLSAICLNNRG-LEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred HhccCCCCcHHHHHHHHHHHhHHhcCHHH-HHHHHhcChHHHHHHHhCC
Confidence 87 4 5678888788889999877665 5667778999999999843
No 250
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=93.01 E-value=0.88 Score=39.98 Aligned_cols=123 Identities=15% Similarity=0.097 Sum_probs=79.5
Q ss_pred CCCHHHHHHHHHHHHHhccCChhHHHHHH----------------HhCchHHHHHhhCC------CCccchhhHHHHHHH
Q 009568 255 SNDEEVLTDACWALSYLSDGTNDKIQAVI----------------EAGVCPRLVELLGH------PSPSVLIPALRTVGN 312 (532)
Q Consensus 255 ~~d~~v~~~a~~~L~~l~~~~~~~~~~~~----------------~~~~l~~L~~lL~~------~~~~v~~~al~~L~n 312 (532)
.++......+|..|+|++...... ..++ +...+..|+.++.. +...-......++.|
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGC-EKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHH-HHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 344445666777788887654332 2122 12356667777644 234456667899999
Q ss_pred hhcCCcchhHHHhhc--Cc--hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---cCCHHHHHHHHh
Q 009568 313 IVTGDDFQTQCIITY--GA--LPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID---AGLVGPLVNLLQ 381 (532)
Q Consensus 313 l~~~~~~~~~~~~~~--~~--l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~ 381 (532)
++... ..++.+++. +. +..|+..+.+. +..-|..++.+|.|+|.....+ ..++. .+++|.|+--+.
T Consensus 85 lS~~~-~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 85 LSQLP-EGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred hcCCH-HHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhcc
Confidence 99754 466677654 33 77888888888 8777888999999999875555 34443 356666665554
No 251
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=92.91 E-value=7.4 Score=38.66 Aligned_cols=233 Identities=17% Similarity=0.182 Sum_probs=134.5
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCc---hhHHHHHhcCChHHHHHHhhh------hhhhHHHHHHHHHhhhccCC
Q 009568 163 PIFVKLLASPSDDVREQAVWALGNVAGDSP---RCRDLVLSQGALIPLLAQLNE------RAKLSMLRNATWTLSNFCRG 233 (532)
Q Consensus 163 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~---~~~~~~~~~~~l~~L~~ll~~------~~~~~~~~~a~~~L~~L~~~ 233 (532)
..+..++...+.+-+-.++.....++.... ..+..+.+.-+.+.+-+++.. .++.-.+..++..|..+|+.
T Consensus 14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 335666666777777788888888874332 235556666566666677642 23444556677888899998
Q ss_pred CCCCCcccccchHHHHHHhhcCC-CHH------HHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccc-hhh
Q 009568 234 KPQPPFDQVRPALPALAQLVHSN-DEE------VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSV-LIP 305 (532)
Q Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~-d~~------v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v-~~~ 305 (532)
+.-.....+-.-+|.|..++... |++ +..++..+|..++...... ..++..|.++.+.++-.-++... ..-
T Consensus 94 pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~-~~Lia~G~~~~~~Q~y~~~~~~~d~al 172 (698)
T KOG2611|consen 94 PELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGL-MTLIASGGLRVIAQMYELPDGSHDMAL 172 (698)
T ss_pred hhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchh-HHHHhcCchHHHHHHHhCCCCchhHHH
Confidence 75555555667788888888643 333 6788888888887765544 67888899999998765544332 222
Q ss_pred HHHHHHHhhcCCc---chhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH--HHHHHHH----cCCHHHH
Q 009568 306 ALRTVGNIVTGDD---FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD--QIQAVID----AGLVGPL 376 (532)
Q Consensus 306 al~~L~nl~~~~~---~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~--~~~~l~~----~~~i~~L 376 (532)
++.++--...+.+ +....+.. ++..+..-+... +...+.+.|..|+.+....+. .+..+.. ..+..-+
T Consensus 173 al~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~-~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G~ 249 (698)
T KOG2611|consen 173 ALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVL-HNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTGV 249 (698)
T ss_pred HHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHh-hhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHHH
Confidence 3333333333222 11111111 233444444444 567888999999976653221 1111111 1122344
Q ss_pred HHHHhcC-chhHHHHHHHHHHHhh
Q 009568 377 VNLLQNA-EFDIKKEAAWAISNAT 399 (532)
Q Consensus 377 ~~ll~~~-~~~v~~~a~~aL~nl~ 399 (532)
..+|++. .+.-|..|+....|+.
T Consensus 250 ~~IL~~kv~p~qr~pAL~Laa~~~ 273 (698)
T KOG2611|consen 250 VAILQNKVAPSQRLPALILAANMM 273 (698)
T ss_pred HHHHhcccCchhcChHHHHHHHHH
Confidence 5566654 4444555555555543
No 252
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.86 E-value=4.4 Score=43.32 Aligned_cols=198 Identities=17% Similarity=0.119 Sum_probs=109.2
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCCch
Q 009568 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS----PSDDVREQAVWALGNVAGDSPR 193 (532)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~~~~~ 193 (532)
.+..+.+++....- --..|++.|..+......-... .+..+..++.+ .++.++..|+.+++.++.....
T Consensus 396 av~~i~~~I~~~~~--~~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKKL--TDDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT-S---HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCC--CHHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 45566777776541 1233455555554422122222 23555566654 4677888888888887532111
Q ss_pred h---------HHHHHhcCChHHHHHHhh---hhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCC---CH
Q 009568 194 C---------RDLVLSQGALIPLLAQLN---ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN---DE 258 (532)
Q Consensus 194 ~---------~~~~~~~~~l~~L~~ll~---~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~---d~ 258 (532)
. .........++.+...+. ...+..-+..++.+|+|+... ..++.+.+++... +.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-H
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccch
Confidence 1 111222345667777664 233557788889999998653 5778888888766 67
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC--CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHH
Q 009568 259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL 336 (532)
Q Consensus 259 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l 336 (532)
.++..|+|++..+....++.+ .+.++.++.+ .+.++|..|+.+|.. ..+.. ..+..+...
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~---~~P~~-------~~l~~i~~~ 600 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMR---CNPSP-------SVLQRIAQS 600 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHH---T---H-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHh---cCCCH-------HHHHHHHHH
Confidence 899999999998876665443 3555666644 356688888766643 22211 235567777
Q ss_pred hcCCCchhHHHHHH
Q 009568 337 LTHSHKKSIKKEAC 350 (532)
Q Consensus 337 L~~~~~~~v~~~a~ 350 (532)
+....+..|.....
T Consensus 601 l~~E~~~QV~sfv~ 614 (618)
T PF01347_consen 601 LWNEPSNQVASFVY 614 (618)
T ss_dssp HTT-S-HHHHHHHH
T ss_pred HhhCchHHHHHHHH
Confidence 76553555554443
No 253
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=92.46 E-value=2.8 Score=36.47 Aligned_cols=141 Identities=18% Similarity=0.172 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhcC-Chh----hHHHHH------hCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc
Q 009568 134 LQFEAAWALTNIASG-TSE----NTKVVI------DHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ 201 (532)
Q Consensus 134 ~~~~a~~~L~~l~~~-~~~----~~~~i~------~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~ 201 (532)
+|..|+.+|..++.. ++. +...++ ..+.-+.|+. ++.++++.+|..|+.++..+-.+...+-...-+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 566777777777663 111 111111 1223444454 5677899999999999999876543221111111
Q ss_pred -------------------CChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCc--ccccchHHHHHHhhcCCCHHH
Q 009568 202 -------------------GALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF--DQVRPALPALAQLVHSNDEEV 260 (532)
Q Consensus 202 -------------------~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~--~~~~~~l~~L~~lL~~~d~~v 260 (532)
..-..|+..|....+..+...++.++..|...-|.... .....++..+..++.+.|..+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 12334455554555778888999999999988654433 334556666677788899999
Q ss_pred HHHHHHHHHHhccC
Q 009568 261 LTDACWALSYLSDG 274 (532)
Q Consensus 261 ~~~a~~~L~~l~~~ 274 (532)
+..++.+++.+...
T Consensus 162 ~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 162 RVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999887644
No 254
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=92.45 E-value=9.5 Score=35.79 Aligned_cols=209 Identities=13% Similarity=0.110 Sum_probs=140.7
Q ss_pred HHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcc----hhHHHhh-cCchHHHHHHhcCCCc-hhHHHHHHHHH
Q 009568 280 QAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF----QTQCIIT-YGALPYLLGLLTHSHK-KSIKKEACWTI 353 (532)
Q Consensus 280 ~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~----~~~~~~~-~~~l~~L~~lL~~~~~-~~v~~~a~~~L 353 (532)
+.+.++|++..++..+..-+...+..++.+..|+-...-. ..+++.. ..++..++.- -.+ +++--.+...+
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~---~~~~~~iaL~cg~ml 149 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG---YENTPEIALTCGNML 149 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh---hccchHHHHHHHHHH
Confidence 5577889999999999999999999999999998754321 1222221 1233333333 212 33333333334
Q ss_pred HHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc--CC-hHHHHhhcCCCCHHH
Q 009568 354 SNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE--GC-IKPLCDLFVCPDPRI 430 (532)
Q Consensus 354 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--~~-l~~L~~lL~~~d~~v 430 (532)
..+..+ +.....++...-+.....+++.+..++...|......+......-..+++..+ .. .+..-.++.+.+.-+
T Consensus 150 rEcirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvt 228 (342)
T KOG1566|consen 150 RECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVT 228 (342)
T ss_pred HHHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceeh
Confidence 444333 44455566777788889999999999999999998888776543344444432 12 334666888999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCcc
Q 009568 431 VTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDD 502 (532)
Q Consensus 431 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~~~ 502 (532)
+..++..+..++....+.. .-...+.....+..+..|+..+...++-.|..+...|......
T Consensus 229 krqs~kllg~llldr~N~~----------~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK 290 (342)
T KOG1566|consen 229 KRQSLKLLGELLLDRSNSA----------VMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNK 290 (342)
T ss_pred HHHHHHhHHHHHhCCCcHH----------HHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCC
Confidence 9999999999987654432 2344555556678889999999999999999988877665443
No 255
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=92.38 E-value=3.4 Score=35.94 Aligned_cols=143 Identities=13% Similarity=0.163 Sum_probs=90.3
Q ss_pred chhhHHHHHHHhhcCCcch-h----HHHhhc-------CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009568 302 VLIPALRTVGNIVTGDDFQ-T----QCIITY-------GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369 (532)
Q Consensus 302 v~~~al~~L~nl~~~~~~~-~----~~~~~~-------~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 369 (532)
+|..|+.+|..++...+.. . ..++-. .-...+.-++.++ ++.+|..|+.++..+..|........-+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp-~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP-SPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC-chhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 5777888888887762211 0 111111 2233444555666 9999999999999999876554433221
Q ss_pred cC-------------------CHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHH
Q 009568 370 AG-------------------LVGPLVNLLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429 (532)
Q Consensus 370 ~~-------------------~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~ 429 (532)
.. +-..|+..++.+ +..+....+.++..++.....+..+.=+-..++..+..++.+.|++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 11 223455555554 6778888899999888875443322200112456666677889999
Q ss_pred HHHHHHHHHHHHHHhh
Q 009568 430 IVTVCLEGLENILKVG 445 (532)
Q Consensus 430 v~~~al~~L~~l~~~~ 445 (532)
++..++.++..++...
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999887654
No 256
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=92.33 E-value=1.3 Score=37.83 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=30.2
Q ss_pred CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009568 328 GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ 365 (532)
Q Consensus 328 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 365 (532)
.+++.|.++|+.+.+..+|.++..+||.|.+-+|...+
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k 47 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK 47 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence 46778888998876789999999999999885554433
No 257
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=92.23 E-value=5.8 Score=36.86 Aligned_cols=215 Identities=20% Similarity=0.163 Sum_probs=121.1
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHhcCCC--CCchhH-h-----------hhCCcHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 009568 79 MVAGVWSDDSSLQLEATTQFRKLLSIER--SPPIEE-V-----------IQSGVVPRFVEFLMREDYPQLQFEAAWALTN 144 (532)
Q Consensus 79 lv~~L~s~~~~~~~~a~~~l~~l~~~~~--~~~~~~-~-----------i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~ 144 (532)
-+.+|.+..+..-..|+..+.+++..-+ .+.... + .-.|+-+.+++-+.+.. ....++..|..
T Consensus 12 ~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~---t~e~tl~lL~~ 88 (262)
T PF14225_consen 12 AVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS---TYELTLRLLSR 88 (262)
T ss_pred HHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC---cHHHHHHHHHH
Confidence 3567777777777778888887776521 111111 1 11244455555555544 34445555555
Q ss_pred HhcC-------ChhhHHHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh
Q 009568 145 IASG-------TSENTKVVIDHGAVPIFVKLLASPS----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE 213 (532)
Q Consensus 145 l~~~-------~~~~~~~i~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~ 213 (532)
++.- ..+.+-.+.-.+.+|.++..+.+++ ......++..|+.+|.... ...+..++....+
T Consensus 89 L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~ 160 (262)
T PF14225_consen 89 LTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAK 160 (262)
T ss_pred HhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHh
Confidence 5441 2222323332356788888777765 2344556677888873221 1123334444322
Q ss_pred h---hhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHH
Q 009568 214 R---AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 290 (532)
Q Consensus 214 ~---~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 290 (532)
. ...+....++..|..-.. | ......+-.++.+|.++.+.++..++..|..+....+-... ...+++..
T Consensus 161 ~~fr~~~dfl~~v~~~l~~~f~--P----~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlisp 232 (262)
T PF14225_consen 161 GRFRDKDDFLSQVVSYLREAFF--P----DHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISP 232 (262)
T ss_pred cCCCCHHHHHHHHHHHHHHHhC--c----hhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHH
Confidence 2 234455555555443221 1 12245677888999999899999999999988755432212 44568888
Q ss_pred HHHhhCCCCccchhhHHHHHHHhhc
Q 009568 291 LVELLGHPSPSVLIPALRTVGNIVT 315 (532)
Q Consensus 291 L~~lL~~~~~~v~~~al~~L~nl~~ 315 (532)
+..++..+. -..|+.+|-++.+
T Consensus 233 llrlL~t~~---~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 233 LLRLLQTDL---WMEALEVLDEIVT 254 (262)
T ss_pred HHHHhCCcc---HHHHHHHHHHHHh
Confidence 888887664 4456666655544
No 258
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=92.23 E-value=12 Score=37.24 Aligned_cols=132 Identities=15% Similarity=0.148 Sum_probs=94.9
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhcCC---hhhHHHHHhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHhhCCC
Q 009568 122 FVEFLMREDYPQLQFEAAWALTNIASGT---SENTKVVIDHGAVPIFVKLLAS-------PSDDVREQAVWALGNVAGDS 191 (532)
Q Consensus 122 Lv~lL~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~i~~~g~i~~L~~lL~~-------~~~~v~~~a~~~L~nl~~~~ 191 (532)
+..++...+ .+-|+.|+...+.++.+. ...++.+.+.-+.+.+-++|.+ ++...+..++..|..+|.+.
T Consensus 16 ~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 16 CLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred HHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 556666666 678999999999998743 3456667887778888888865 34566778888888888765
Q ss_pred chh-HHHHHhcCChHHHHHHhhhhhhhH------HHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCC
Q 009568 192 PRC-RDLVLSQGALIPLLAQLNERAKLS------MLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN 256 (532)
Q Consensus 192 ~~~-~~~~~~~~~l~~L~~ll~~~~~~~------~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~ 256 (532)
.-. ...++ +.+|.|+..+.+..+++ +...+..+|..++...+........|.++.+.++-.-.
T Consensus 95 ElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~ 164 (698)
T KOG2611|consen 95 ELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELP 164 (698)
T ss_pred hhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCC
Confidence 321 11222 25888888886554444 88889999999998877777777789999998776533
No 259
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=92.23 E-value=4.7 Score=40.64 Aligned_cols=275 Identities=12% Similarity=0.109 Sum_probs=118.5
Q ss_pred cHHHHHHhhcC---CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCch
Q 009568 118 VVPRFVEFLMR---EDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPR 193 (532)
Q Consensus 118 ~i~~Lv~lL~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~ 193 (532)
++..|..++.. ..|+.+-....+++..+-.+-......++. ..+..+....++ .++..-.....+++.+......
T Consensus 27 ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~-~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~ 105 (435)
T PF03378_consen 27 LLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQ-HLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCE 105 (435)
T ss_dssp HHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHH-HHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-G
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccC
Confidence 34444444443 223445555555555444433344443432 122333333344 4566666666666665432211
Q ss_pred h-HH--HHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCC-CCCcccccchHHHHHH-hhcCCCHHHHHHHHHHH
Q 009568 194 C-RD--LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP-QPPFDQVRPALPALAQ-LVHSNDEEVLTDACWAL 268 (532)
Q Consensus 194 ~-~~--~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~l~~L~~-lL~~~d~~v~~~a~~~L 268 (532)
. .. .-.+...++.+..+| +..-.+..-.+...|+.|.+..+ .........++|.|+. .+-.....+ -...+.|
T Consensus 106 ~~~~~v~~~E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL 183 (435)
T PF03378_consen 106 ADPEAVSQFEEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLL 183 (435)
T ss_dssp GGHH---HHHHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHH
Confidence 1 11 123444677777777 44445566666666666655543 2222233344444331 111111111 1112222
Q ss_pred HHhccCChhHHHHHHHhC----chHHHHHhhCCCCccchhhHHHHHHHhhcCCcch-hHHHhhcCchHHHHHHhcCCCch
Q 009568 269 SYLSDGTNDKIQAVIEAG----VCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ-TQCIITYGALPYLLGLLTHSHKK 343 (532)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~----~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~-~~~~~~~~~l~~L~~lL~~~~~~ 343 (532)
..+....+.. +...+ ++..+-.++.+.. .-..+...|..+...-+.. .+..+. .++..+..-|+++..+
T Consensus 184 ~a~i~k~~~~---i~~~~~l~~iLgvFQkLi~sk~--~D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~ 257 (435)
T PF03378_consen 184 QAYIKKDPSF---IVANNQLEPILGVFQKLIASKA--NDHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTE 257 (435)
T ss_dssp HHHHHHHGGG-------S-CHHHHHHHHHHHT-TT--CHHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--H
T ss_pred HHHHHhCchh---hcchhhHHHHHHHHHHHHCCCC--cchHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcH
Confidence 2222111111 11122 2333334454443 2345777787777655532 111222 3555556666655466
Q ss_pred hHHHHHHHHHHHHhc-CCHHHHHHHHH---cCCHHHHHHH--H---hc-CchhHHHHHHHHHHHhhcC
Q 009568 344 SIKKEACWTISNITA-GNRDQIQAVID---AGLVGPLVNL--L---QN-AEFDIKKEAAWAISNATSG 401 (532)
Q Consensus 344 ~v~~~a~~~L~nl~~-~~~~~~~~l~~---~~~i~~L~~l--l---~~-~~~~v~~~a~~aL~nl~~~ 401 (532)
+..+.-+..++.++. .+++..-..++ .|++..++.- + .. ..+.-|+-++-+++++...
T Consensus 258 kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~e 325 (435)
T PF03378_consen 258 KFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCE 325 (435)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhc
Confidence 677666666776654 34544444443 4554444432 1 11 1334566777777776654
No 260
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.21 E-value=4.4 Score=42.90 Aligned_cols=136 Identities=18% Similarity=0.167 Sum_probs=82.6
Q ss_pred cchHHHHHHhhcCC----CHHHHHHHHHHHHHhcc----CChhHHHHHHHhCchHHHHHhhC----CCCccchhhHHHHH
Q 009568 243 RPALPALAQLVHSN----DEEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLVELLG----HPSPSVLIPALRTV 310 (532)
Q Consensus 243 ~~~l~~L~~lL~~~----d~~v~~~a~~~L~~l~~----~~~~~~~~~~~~~~l~~L~~lL~----~~~~~v~~~al~~L 310 (532)
...+..+..++.++ .+.+...++.+++.+.. ..+.. ...+-..+++.+...|. ..+...+..++++|
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL 470 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSC-PDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKAL 470 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhh
Confidence 34566666777643 45567777777776653 11110 01112245566665553 34555677889999
Q ss_pred HHhhcCCcchhHHHhhcCchHHHHHHhc--CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--chh
Q 009568 311 GNIVTGDDFQTQCIITYGALPYLLGLLT--HSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFD 386 (532)
Q Consensus 311 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~ 386 (532)
||+.... .++.+...+. ...+..+|..|+|+|.+++...+..+ -+.|+.++.+. +++
T Consensus 471 GN~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~E 531 (574)
T smart00638 471 GNAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPE 531 (574)
T ss_pred hccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChH
Confidence 9987532 2334444443 12256899999999999986555533 34556666553 788
Q ss_pred HHHHHHHHHHHh
Q 009568 387 IKKEAAWAISNA 398 (532)
Q Consensus 387 v~~~a~~aL~nl 398 (532)
+|..|+.+|...
T Consensus 532 vRiaA~~~lm~t 543 (574)
T smart00638 532 VRMAAVLVLMET 543 (574)
T ss_pred HHHHHHHHHHhc
Confidence 999888887655
No 261
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.74 E-value=1.1 Score=34.09 Aligned_cols=84 Identities=14% Similarity=0.178 Sum_probs=63.9
Q ss_pred hHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009568 288 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAV 367 (532)
Q Consensus 288 l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 367 (532)
+...+..+.++.+.+|..++..|..+..... ....-..+++..+...|+++ ++.|--.|..+|+.++...++.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~~---- 77 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPDE---- 77 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChHH----
Confidence 4566777888999999999999999998766 11222347788889999999 9999999999999999755542
Q ss_pred HHcCCHHHHHHHHhc
Q 009568 368 IDAGLVGPLVNLLQN 382 (532)
Q Consensus 368 ~~~~~i~~L~~ll~~ 382 (532)
+++.|++...+
T Consensus 78 ----vl~~L~~~y~~ 88 (92)
T PF10363_consen 78 ----VLPILLDEYAD 88 (92)
T ss_pred ----HHHHHHHHHhC
Confidence 45556555443
No 262
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=91.58 E-value=1.7 Score=37.31 Aligned_cols=112 Identities=18% Similarity=0.200 Sum_probs=78.8
Q ss_pred CchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhc--CchHHHHHHhcCCCchhHHHHHHHHHHHHhc---CC
Q 009568 286 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITY--GALPYLLGLLTHSHKKSIKKEACWTISNITA---GN 360 (532)
Q Consensus 286 ~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~--~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~ 360 (532)
..+..+..+|.++++.-+..++..+.-++..++. +.+.++ ..+..++.+|+.+..+.+++.++.++..+.. +.
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 5667788899999999999999999998876532 233332 4678889999887567889999999998875 55
Q ss_pred HHHHHHHHHc---CCHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009568 361 RDQIQAVIDA---GLVGPLVNLLQNAEFDIKKEAAWAISNATSG 401 (532)
Q Consensus 361 ~~~~~~l~~~---~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 401 (532)
++..+.+... ++++.++.+++. ......++.+|..+...
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 6655555433 235555555553 46667777777777653
No 263
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=91.02 E-value=1.2 Score=39.31 Aligned_cols=99 Identities=10% Similarity=0.109 Sum_probs=72.5
Q ss_pred chhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcC----CCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHH
Q 009568 302 VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH----SHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPL 376 (532)
Q Consensus 302 v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~----~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L 376 (532)
-...|+..|..+++.++ ....++++.+--.+...|.. +..+.+|-.+..+++.+.. +++..+..+....++|.+
T Consensus 116 RvcnaL~lLQclaShPe-tk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 116 RVCNALNLLQCLASHPE-TKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred HHHHHHHHHHHHhcCcc-hheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 34556777777776544 55566776655455555532 2245788899999999988 677778888888999999
Q ss_pred HHHHhcCchhHHHHHHHHHHHhhcC
Q 009568 377 VNLLQNAEFDIKKEAAWAISNATSG 401 (532)
Q Consensus 377 ~~ll~~~~~~v~~~a~~aL~nl~~~ 401 (532)
+++++.++.--+.-|+..+..+...
T Consensus 195 LrIme~gSElSktvaifI~qkil~d 219 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILGD 219 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 9999999877777888888777653
No 264
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=90.53 E-value=10 Score=38.44 Aligned_cols=165 Identities=12% Similarity=0.067 Sum_probs=110.3
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCc----cchhhHHHHHHHhhcCCcch
Q 009568 245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP----SVLIPALRTVGNIVTGDDFQ 320 (532)
Q Consensus 245 ~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~----~v~~~al~~L~nl~~~~~~~ 320 (532)
....+...+.+++...+..++..+..++.. ......++....+..|..++.++.. .+...+++++..+....- .
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-v 161 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-V 161 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-e
Confidence 344567777777777777788888887754 4456778888899999999977643 455556666665554322 1
Q ss_pred hHHHhhcCchHHHHHHhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009568 321 TQCIITYGALPYLLGLLTH-SHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT 399 (532)
Q Consensus 321 ~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 399 (532)
.-..+...++.....+.+- ..+..+-..|...|-++..+++...+.+.+.--+..|+..++..+..++..|...+..+.
T Consensus 162 sW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 162 SWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred eeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 1111222233333333321 114567778888888888887766666777777999999999999999988888887787
Q ss_pred cCCCHHHHHHHH
Q 009568 400 SGGTHEQIKYLV 411 (532)
Q Consensus 400 ~~~~~~~~~~l~ 411 (532)
..+.++.+..+.
T Consensus 242 ~~a~~~~R~~~~ 253 (713)
T KOG2999|consen 242 RKAPDDKRFEMA 253 (713)
T ss_pred hhCChHHHHHHH
Confidence 776655544444
No 265
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=90.53 E-value=14 Score=39.14 Aligned_cols=236 Identities=17% Similarity=0.152 Sum_probs=122.6
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhc-CCCCCchhHhhhCC---cHHHHHHhhcCCCCHH-HHHHHHHHHHHHh-cC
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLS-IERSPPIEEVIQSG---VVPRFVEFLMREDYPQ-LQFEAAWALTNIA-SG 148 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~-~~~~~~~~~~i~~g---~i~~Lv~lL~~~~~~~-~~~~a~~~L~~l~-~~ 148 (532)
.+-.|++.|+.-+.+........+.. .. .......+.+...| .+..+.+++....-+. ....++..+.... ..
T Consensus 312 ~f~~lv~~lR~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~P 390 (574)
T smart00638 312 KFLRLVRLLRTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYP 390 (574)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcC
Confidence 45566666665554443333333322 10 00011233344333 4556666666654221 1222222222222 22
Q ss_pred ChhhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhC----CCchhHHHHHhcCChHHHHHHhhh---hhhh
Q 009568 149 TSENTKVVIDHGAVPIFVKLLAS----PSDDVREQAVWALGNVAG----DSPRCRDLVLSQGALIPLLAQLNE---RAKL 217 (532)
Q Consensus 149 ~~~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~----~~~~~~~~~~~~~~l~~L~~ll~~---~~~~ 217 (532)
+++ .+..+..++.+ ....++..|+.++++++. +.+.+... .....++.+...|.. ..+.
T Consensus 391 t~~---------~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~ 460 (574)
T smart00638 391 TEE---------ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDF-VLEELLKYLHELLQQAVSKGDE 460 (574)
T ss_pred CHH---------HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChh-hHHHHHHHHHHHHHHHHhcCCc
Confidence 222 34566666654 456788888888887753 22211111 112345666665532 2344
Q ss_pred HHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc-C--CCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHh
Q 009568 218 SMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-S--NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 294 (532)
Q Consensus 218 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~-~--~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 294 (532)
.-+..++.+|+|+... ..++.+.+.+. . ....++..|+|+|..++...+.. +-+.++.+
T Consensus 461 ~~~~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i 522 (574)
T smart00638 461 EEIQLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPI 522 (574)
T ss_pred hheeeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHH
Confidence 4566677888887754 45566666665 2 25679999999999887655543 23455566
Q ss_pred hCC--CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHH
Q 009568 295 LGH--PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA 349 (532)
Q Consensus 295 L~~--~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a 349 (532)
+.+ .+.++|..|+..|... .+.. ..+..+...+....+..|+...
T Consensus 523 ~~n~~e~~EvRiaA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv 569 (574)
T smart00638 523 YLNRAEPPEVRMAAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVASFV 569 (574)
T ss_pred HcCCCCChHHHHHHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHHHh
Confidence 544 4567888777666432 2211 2355666666655355555433
No 266
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=90.47 E-value=19 Score=35.48 Aligned_cols=147 Identities=14% Similarity=0.079 Sum_probs=89.0
Q ss_pred HHHhCchHHHHHhhCC-CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhc----C-CCchhHHHHHHHHHHH
Q 009568 282 VIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT----H-SHKKSIKKEACWTISN 355 (532)
Q Consensus 282 ~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~----~-~~~~~v~~~a~~~L~n 355 (532)
+.+.+-.+.+-.-+.. +...-+..|+..+..++.........++ ...+..+|. + ..++.-+..|+..++.
T Consensus 206 lfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~a 281 (370)
T PF08506_consen 206 LFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGA 281 (370)
T ss_dssp HHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHH
T ss_pred HHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHH
Confidence 4444555555555543 3356678888999888865443322222 233444443 1 2266778889999999
Q ss_pred HhcCCHH------------HHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhc
Q 009568 356 ITAGNRD------------QIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLF 423 (532)
Q Consensus 356 l~~~~~~------------~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL 423 (532)
++..... .+..++...++|.|. --.+..+-++..|++.+..+-..-+++.... +++.++..|
T Consensus 282 la~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~-----~~~~l~~~L 355 (370)
T PF08506_consen 282 LASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQ-----IFPLLVNHL 355 (370)
T ss_dssp HHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHH-----HHHHHHHHT
T ss_pred HHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHh
Confidence 9873211 244555556777765 2223467799999999998887666554443 799999999
Q ss_pred CCCCHHHHHHHHHHH
Q 009568 424 VCPDPRIVTVCLEGL 438 (532)
Q Consensus 424 ~~~d~~v~~~al~~L 438 (532)
.+++.-|...|..++
T Consensus 356 ~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 356 QSSSYVVHTYAAIAI 370 (370)
T ss_dssp TSS-HHHHHHHHHHH
T ss_pred CCCCcchhhhhhhhC
Confidence 999988877776553
No 267
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=90.43 E-value=6.2 Score=34.98 Aligned_cols=101 Identities=15% Similarity=0.275 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhcCCCCCchhH-hhhCCcHHH-HHHhhcCC----CCHHHHHHHHHHHHHHhc-CChhhHHHHHhCCCh
Q 009568 90 LQLEATTQFRKLLSIERSPPIEE-VIQSGVVPR-FVEFLMRE----DYPQLQFEAAWALTNIAS-GTSENTKVVIDHGAV 162 (532)
Q Consensus 90 ~~~~a~~~l~~l~~~~~~~~~~~-~i~~g~i~~-Lv~lL~~~----~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i 162 (532)
-...|+..|..+++. |.++. ++++. +|. +-.+|... ...-+|..++.+++.+.. +++.....+....++
T Consensus 116 RvcnaL~lLQclaSh---Petk~~Fl~Ah-iplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeiv 191 (315)
T COG5209 116 RVCNALNLLQCLASH---PETKKVFLDAH-IPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIV 191 (315)
T ss_pred HHHHHHHHHHHHhcC---cchheeeeecc-cceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHH
Confidence 344677777777774 44444 33443 332 23344322 125688999999999987 456667777788999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 009568 163 PIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194 (532)
Q Consensus 163 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 194 (532)
|.+++++...++--+..++.++..+.+++...
T Consensus 192 PLcLrIme~gSElSktvaifI~qkil~dDvGL 223 (315)
T COG5209 192 PLCLRIMELGSELSKTVAIFIFQKILGDDVGL 223 (315)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccchhH
Confidence 99999999988888889999999988776543
No 268
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=90.19 E-value=1.3 Score=39.00 Aligned_cols=82 Identities=10% Similarity=0.186 Sum_probs=62.2
Q ss_pred ChhhHHHHHhCCChHHHHHhhCC---------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHH
Q 009568 149 TSENTKVVIDHGAVPIFVKLLAS---------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSM 219 (532)
Q Consensus 149 ~~~~~~~i~~~g~i~~L~~lL~~---------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~ 219 (532)
.......+++.|++..|+.+|.. .+..+...++.||..|..........+-..+++..|+..+ .+.+..+
T Consensus 96 ~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~ 174 (187)
T PF06371_consen 96 PISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSL-DSPNIKT 174 (187)
T ss_dssp -HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT---TTSHHH
T ss_pred CchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHH-CCCCHHH
Confidence 45667788888999999998853 3457888899999998776665555555577888888888 7888999
Q ss_pred HHHHHHHhhhcc
Q 009568 220 LRNATWTLSNFC 231 (532)
Q Consensus 220 ~~~a~~~L~~L~ 231 (532)
+..++..|..+|
T Consensus 175 r~~~leiL~~lc 186 (187)
T PF06371_consen 175 RKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998876
No 269
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=90.07 E-value=18 Score=37.71 Aligned_cols=255 Identities=13% Similarity=0.194 Sum_probs=131.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCCchhHH
Q 009568 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP--SDDVREQAVWALGNVAGDSPRCRD 196 (532)
Q Consensus 119 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~~ 196 (532)
+-.|...+.+++ ..++..|+..|+-.-.++. ++.+. ..|..++.+. ..++...|...|+.+...+.. .+
T Consensus 454 lALLsdyv~~~~-s~~ri~aIlGLglayaGsq--~e~V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn-~d 524 (878)
T KOG2005|consen 454 LALLSDYLQSSS-SIHRIGAILGLGLAYAGSQ--REEVL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCN-ED 524 (878)
T ss_pred HHHHHHhccCCC-ceeehHHhhhhHHhhcCCc--hHHHH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEecCC-hH
Confidence 445566677777 6788888777776555332 22332 1445555553 356777777778877644321 11
Q ss_pred HHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q 009568 197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN 276 (532)
Q Consensus 197 ~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~ 276 (532)
. ...++..++..-.........+.....|.-+.-+.. ..+...+..+..-...+...+-..+..++....
T Consensus 525 v--ts~ilqtlmekse~El~d~~~RFL~LGL~llflgkq--------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGT 594 (878)
T KOG2005|consen 525 V--TSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQ--------ESVDAVVETIKAIEGPIRKHESILVKSCAYAGT 594 (878)
T ss_pred H--HHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhccc--------chHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Confidence 1 112333333322111122233333333333333221 122222222222222232222222222111111
Q ss_pred hHHHHHHHhCchHHHHHhhCCCC---ccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHH
Q 009568 277 DKIQAVIEAGVCPRLVELLGHPS---PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI 353 (532)
Q Consensus 277 ~~~~~~~~~~~l~~L~~lL~~~~---~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 353 (532)
...-.+-+ ..+..+-.... ..-...|+.-++-++.+.+-..+. .+..+-.+|... ++.+|+..=-++
T Consensus 595 Gnvl~Iq~----q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM-----~lR~f~h~l~yg-e~~iRravPLal 664 (878)
T KOG2005|consen 595 GNVLKIQS----QLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEM-----VLRHFGHLLHYG-EPHIRRAVPLAL 664 (878)
T ss_pred CceEEech----hhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHH-----HHHHHHHHHHcC-CHHHHHHHHHHH
Confidence 00000000 12222222221 122335666666666666544332 355677888888 999999999999
Q ss_pred HHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHH
Q 009568 354 SNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKY 409 (532)
Q Consensus 354 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 409 (532)
+-++..+|.. +++..|-++.+..+.++..++..+++-+-.+.+...+..
T Consensus 665 ~llsvSNPq~-------~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARla~ 713 (878)
T KOG2005|consen 665 GLLSVSNPQV-------NVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARLAQ 713 (878)
T ss_pred hhhccCCCcc-------hHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHHHH
Confidence 9999887753 377888888899999999999999988776655444333
No 270
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.93 E-value=3.8 Score=43.65 Aligned_cols=311 Identities=16% Similarity=0.117 Sum_probs=152.0
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh------C
Q 009568 86 DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID------H 159 (532)
Q Consensus 86 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~------~ 159 (532)
+|..+...+++.+..++.. ......+++.|+|..|+.. +...+.-.....||+.|.. .....+.++. .
T Consensus 365 ~d~~l~~~~~k~~~~l~~h--~kfa~~fv~~~gi~kll~v---pr~s~~~~g~s~cly~~~~-~q~~mervc~~p~~v~~ 438 (1516)
T KOG1832|consen 365 DDSPLLPDVMKLICALAAH--RKFAAMFVERRGILKLLAV---PRVSETFYGLSSCLYTIGS-LQGIMERVCALPLVVIH 438 (1516)
T ss_pred ccccccHHHHHHHHHHHHh--hHHHHHHHHhhhhHHHhcC---CCchhhhhhHHHHHHHHhh-hhhHHHHHhhccHHHHH
Confidence 3444556777777777764 4566677888887666554 3313444445567777766 3333333322 2
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhh------------------hhhHHHH
Q 009568 160 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER------------------AKLSMLR 221 (532)
Q Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~------------------~~~~~~~ 221 (532)
.++..-+.+|......-+.++...+...... ...-+.+-..+.+..|+.++..- .+.....
T Consensus 439 ~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~f-rail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~ 517 (1516)
T KOG1832|consen 439 QVVKLAIELLDCSQDQARKNSALFFAAAFVF-RAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAF 517 (1516)
T ss_pred HHHHHHHHHHhcchhhccchHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhh
Confidence 3344445555543333333332222211110 01123344455677777776310 1122333
Q ss_pred HHHHHhhhccCCC-----CC-CCcccccchHHHHHHhhcCC------CHHHHHHHHHHHHHhccCCh-------hHHHHH
Q 009568 222 NATWTLSNFCRGK-----PQ-PPFDQVRPALPALAQLVHSN------DEEVLTDACWALSYLSDGTN-------DKIQAV 282 (532)
Q Consensus 222 ~a~~~L~~L~~~~-----~~-~~~~~~~~~l~~L~~lL~~~------d~~v~~~a~~~L~~l~~~~~-------~~~~~~ 282 (532)
..|.+|....+.. .. .......+..+..++-+... ..+..+.++|-+-.+....+ .-...+
T Consensus 518 htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenf 597 (1516)
T KOG1832|consen 518 HTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENF 597 (1516)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHH
Confidence 4444444322211 00 00111112222222222211 12234455555544433222 122346
Q ss_pred HHhCchHHHHHhhCC-CCcc-------chhhHHHHHHHhhcCCcchhHHHhhc--------CchHHHHHHhcC---CCch
Q 009568 283 IEAGVCPRLVELLGH-PSPS-------VLIPALRTVGNIVTGDDFQTQCIITY--------GALPYLLGLLTH---SHKK 343 (532)
Q Consensus 283 ~~~~~l~~L~~lL~~-~~~~-------v~~~al~~L~nl~~~~~~~~~~~~~~--------~~l~~L~~lL~~---~~~~ 343 (532)
++.+.+..++.+... .+|. ....|+.+|..+..-++.+ ..+... .++..++..-.- -.++
T Consensus 598 lkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq-~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dp 676 (1516)
T KOG1832|consen 598 LKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQ-KALAHATLSNNRAYDGIAIILDAANGSNSIVDP 676 (1516)
T ss_pred HHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHH-HHHHHHHhhcccccCceEEEeecccccccccCH
Confidence 666777777777643 2332 3445565555554433322 233221 133333333221 1278
Q ss_pred hHHHHHHHHHHHHhcCCHHHH-------------------------------H----HHHHcCCHHHHHHHHhcCc----
Q 009568 344 SIKKEACWTISNITAGNRDQI-------------------------------Q----AVIDAGLVGPLVNLLQNAE---- 384 (532)
Q Consensus 344 ~v~~~a~~~L~nl~~~~~~~~-------------------------------~----~l~~~~~i~~L~~ll~~~~---- 384 (532)
++++.|+.+|.|+..+.|+.. . .+...+.|..|+.+++...
T Consensus 677 ei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~ 756 (1516)
T KOG1832|consen 677 EIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTT 756 (1516)
T ss_pred HHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCc
Confidence 999999999999876542211 1 1223567899999998753
Q ss_pred -hhHHHHHHHHHHHhhcCCCH
Q 009568 385 -FDIKKEAAWAISNATSGGTH 404 (532)
Q Consensus 385 -~~v~~~a~~aL~nl~~~~~~ 404 (532)
..+|.-||.+|.-++...+.
T Consensus 757 aD~IRalAc~~L~GLaR~~tV 777 (1516)
T KOG1832|consen 757 ADCIRALACRVLLGLARDDTV 777 (1516)
T ss_pred HHHHHHHHHHHHhccccCcHH
Confidence 36899999999999986543
No 271
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=89.81 E-value=17 Score=33.84 Aligned_cols=179 Identities=18% Similarity=0.163 Sum_probs=98.9
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-------chhHHHHHhcCChHHHHHHhhhhh---hhHHHHHHHHHhhhcc
Q 009568 162 VPIFVKLLASPSDDVREQAVWALGNVAGDS-------PRCRDLVLSQGALIPLLAQLNERA---KLSMLRNATWTLSNFC 231 (532)
Q Consensus 162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-------~~~~~~~~~~~~l~~L~~ll~~~~---~~~~~~~a~~~L~~L~ 231 (532)
-+.+++-+.+ ....+.++..|..++... ...|-.+.-.+.+|.++..+.+.. .......++..|+.+|
T Consensus 66 q~Ll~KGL~S--s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a 143 (262)
T PF14225_consen 66 QPLLLKGLRS--SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVA 143 (262)
T ss_pred HHHHhCccCC--CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHH
Confidence 3444444544 334556667777765321 112322222334555555553222 1245566778888888
Q ss_pred CCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHH
Q 009568 232 RGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 311 (532)
Q Consensus 232 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~ 311 (532)
...... ....++....+--..+..+....++..|+.-.. ++ .+..++..++.+|.++-+.++..++.+|.
T Consensus 144 ~~~~~~---~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~ 213 (262)
T PF14225_consen 144 EAQGLP---NLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PD-----HEFQILTFLLGLLENGPPWLRRKTLQILK 213 (262)
T ss_pred HhCCCc---cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--ch-----hHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 653221 111222222211112334445555555543221 11 12356778889998888899999999999
Q ss_pred HhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568 312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (532)
Q Consensus 312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 358 (532)
.+....+-... ...+++..+.+++.++ ...+|..+|-++..
T Consensus 214 ~ll~~~d~~~~--~~~dlispllrlL~t~----~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 214 VLLPHVDMRSP--HGADLISPLLRLLQTD----LWMEALEVLDEIVT 254 (262)
T ss_pred HHhccccCCCC--cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence 99877664332 5557888999999776 45667777766543
No 272
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=89.62 E-value=4 Score=35.06 Aligned_cols=116 Identities=10% Similarity=0.087 Sum_probs=77.6
Q ss_pred CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHHhcC-chhHHHHHHHHHHHhhcC--CC
Q 009568 328 GALPYLLGLLTHSHKKSIKKEACWTISNITAGN-RDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATSG--GT 403 (532)
Q Consensus 328 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~--~~ 403 (532)
.....+..+|+++ ++.-|..++..+.-++..+ .+....-. ...+..++..++.. .+.+...++.++..+... +.
T Consensus 25 ~l~~ri~~LL~s~-~~~~rw~G~~Ll~~~~~~~~~e~l~~~~-~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSK-SAYSRWAGLCLLKVTVEQCSWEILLSHG-SQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4567788999988 8888888888888877654 33221111 23578888888876 457888899999888752 23
Q ss_pred HHHHHHHHHc---CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 009568 404 HEQIKYLVRE---GCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA 447 (532)
Q Consensus 404 ~~~~~~l~~~---~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 447 (532)
++..+.+.-. +++..++.+++. ......++++|..++.....
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 3433333322 345555555554 66777899999999987654
No 273
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=89.17 E-value=1.6 Score=39.17 Aligned_cols=81 Identities=22% Similarity=0.271 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhCCCh-------HHHHHhhCC-CCHHHHHHHHHHHHHhhCCCc-hhHHHHHhcCC
Q 009568 133 QLQFEAAWALTNIASGTSENTKVVIDHGAV-------PIFVKLLAS-PSDDVREQAVWALGNVAGDSP-RCRDLVLSQGA 203 (532)
Q Consensus 133 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i-------~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~ 203 (532)
.-|..|+.+|++++- .+.+.+.++..+-. ..|..+|.. ++...|+.|+-.|.++|..+. .+|....+.+.
T Consensus 139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 468899999999998 55566666665543 444445544 788999999999999996554 45566778899
Q ss_pred hHHHHHHhhhh
Q 009568 204 LIPLLAQLNER 214 (532)
Q Consensus 204 l~~L~~ll~~~ 214 (532)
+..|+.++.+.
T Consensus 218 i~~Li~FiE~a 228 (257)
T PF12031_consen 218 ISHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999999543
No 274
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=88.89 E-value=4.1 Score=31.28 Aligned_cols=70 Identities=19% Similarity=0.220 Sum_probs=57.5
Q ss_pred HcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHH
Q 009568 412 REGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVK 491 (532)
Q Consensus 412 ~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~ 491 (532)
...++..|+..+..+.+.....++..+..+++... ....+.+.|+.+-+.++..+-+++.+.....
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~--------------a~~~l~~iG~~~fL~klr~~~~~~~~~~id~ 93 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPY--------------AAQILRDIGAVRFLSKLRPNVEPNLQAEIDE 93 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcH--------------HHHHHHHccHHHHHHHHHhcCCHHHHHHHHH
Confidence 44578888888888888888889999999876432 2567888999999999999999999998888
Q ss_pred HHHH
Q 009568 492 ILET 495 (532)
Q Consensus 492 il~~ 495 (532)
+++.
T Consensus 94 il~~ 97 (98)
T PF14726_consen 94 ILDQ 97 (98)
T ss_pred HHhc
Confidence 8864
No 275
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=88.62 E-value=36 Score=37.20 Aligned_cols=130 Identities=15% Similarity=0.129 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHh
Q 009568 173 SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQL 252 (532)
Q Consensus 173 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~l 252 (532)
.+.++.++.-+|+++|--.... ....+|.|++-|..++...++.+.+-++.-+|... .......+|.+...
T Consensus 944 ~~~vra~~vvTlakmcLah~~L-----aKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHDRL-----AKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAAS 1014 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHH
Confidence 3578889999999998543322 22358889999988888889998888888888652 23456788999999
Q ss_pred hcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhc
Q 009568 253 VHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 315 (532)
Q Consensus 253 L~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~ 315 (532)
|.++++-|+..++-.|.+|....--. ....++-+++.-|-+.++.++.-|=.+++.+..
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~~~vK----w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFGIVK----WNGELFIRFMLALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhhhhhh----cchhhHHHHHHHHcccCHHHHHHHHHHHHHHHh
Confidence 99999999999999999987432211 111233334444455666777777777776653
No 276
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=88.57 E-value=5.7 Score=32.86 Aligned_cols=74 Identities=12% Similarity=-0.027 Sum_probs=59.4
Q ss_pred CHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHhh
Q 009568 372 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC------PDPRIVTVCLEGLENILKVG 445 (532)
Q Consensus 372 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~d~~v~~~al~~L~~l~~~~ 445 (532)
.+..+..-+.++++.++..|+..|-.+..++...+-..+...+.+..|+.++.. .++.|+..++..+...-...
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 355677778889999999999999999998887777777788888889998853 56789998888877765433
No 277
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=88.53 E-value=5.4 Score=33.25 Aligned_cols=73 Identities=8% Similarity=0.047 Sum_probs=61.1
Q ss_pred CHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHh
Q 009568 372 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC-PDPRIVTVCLEGLENILKV 444 (532)
Q Consensus 372 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~d~~v~~~al~~L~~l~~~ 444 (532)
.+..|..-+.++++.++..|+..|-.++.++....-..+...+.+..|..++.. .++.|+..++..+......
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 355667778888999999999999999998888887788888899999999987 7888998888887776543
No 278
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=88.38 E-value=33 Score=36.75 Aligned_cols=195 Identities=15% Similarity=0.112 Sum_probs=99.4
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhhh---hhhhHHHHHHHHHhhhccCCC-C
Q 009568 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNE---RAKLSMLRNATWTLSNFCRGK-P 235 (532)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~---~~~~~~~~~a~~~L~~L~~~~-~ 235 (532)
++..+.+++.+....-.+ +.+.|..+.... ....+ .+..+..++.. ..++.+...++.+++.+.... .
T Consensus 396 av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt~e------~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPTEE------LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----HH------HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCCHH------HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 455666666653322222 334444443222 11112 24445555532 224456666666666554332 1
Q ss_pred ---------CCCcccccchHHHHHHhhc----CCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCC---C
Q 009568 236 ---------QPPFDQVRPALPALAQLVH----SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP---S 299 (532)
Q Consensus 236 ---------~~~~~~~~~~l~~L~~lL~----~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~---~ 299 (532)
.........+++.+...+. ..|.+-+..++.+|+|+... ..++.+..++... .
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~ 537 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGKEEVP 537 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTSS-S-
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhccccc
Confidence 1122333455555555554 55778888899999998531 4677788887665 5
Q ss_pred ccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH
Q 009568 300 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS-HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 378 (532)
Q Consensus 300 ~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ 378 (532)
..+|..|+++|..++...+.. +.+.++.++.+. .+.++|-.|..+|... +|..- .+..+..
T Consensus 538 ~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~~~-------~l~~i~~ 599 (618)
T PF01347_consen 538 HFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILMRC---NPSPS-------VLQRIAQ 599 (618)
T ss_dssp HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHHT------HH-------HHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHhc---CCCHH-------HHHHHHH
Confidence 678899999999887654422 345677777543 2567888887666553 23211 3445555
Q ss_pred HHhcC-chhHHHHH
Q 009568 379 LLQNA-EFDIKKEA 391 (532)
Q Consensus 379 ll~~~-~~~v~~~a 391 (532)
.+... +..|....
T Consensus 600 ~l~~E~~~QV~sfv 613 (618)
T PF01347_consen 600 SLWNEPSNQVASFV 613 (618)
T ss_dssp HHTT-S-HHHHHHH
T ss_pred HHhhCchHHHHHHH
Confidence 66543 45554433
No 279
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=88.06 E-value=15 Score=33.84 Aligned_cols=132 Identities=15% Similarity=0.160 Sum_probs=68.8
Q ss_pred HHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCC-chhHHHHHHHHHHHHhcCCH
Q 009568 283 IEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNR 361 (532)
Q Consensus 283 ~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~ 361 (532)
.+...++.++.+++.++.. .-..+|-.++..-...-+.+-.|-++.|..++.++. +.-+|..|+.+|..++...+
T Consensus 70 re~~A~~~li~l~~~~~~~----~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~ 145 (249)
T PF06685_consen 70 REERALPPLIRLFSQDDDF----LEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGP 145 (249)
T ss_pred hhhhhHHHHHHHHcCCcch----HHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 3447789999999766541 122233322211111112233366777777787652 46789999999999998666
Q ss_pred HHHHHHHHcCCHHHHHHH-HhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHH
Q 009568 362 DQIQAVIDAGLVGPLVNL-LQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLC 420 (532)
Q Consensus 362 ~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~ 420 (532)
.....+++ .+..++.. +...+..+-..-+..++.+-...-...++.+.+.|+++..+
T Consensus 146 ~~Re~vi~--~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~~~ 203 (249)
T PF06685_consen 146 ISREEVIQ--YFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDPSF 203 (249)
T ss_pred CCHHHHHH--HHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCccc
Confidence 65666554 34444444 33332222222222222222211223344455667765543
No 280
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=87.86 E-value=8.4 Score=30.96 Aligned_cols=74 Identities=11% Similarity=0.247 Sum_probs=51.7
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHh-ccHHHHHHHhc--------CCCHHH
Q 009568 415 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEA-EGLEKIENLQS--------HDNNEI 485 (532)
Q Consensus 415 ~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~l~~L~~--------~~~~~v 485 (532)
+++.|..-|+.+++.|...+|.+|..++..|... |...+.+. ..+..+.+... ..+..|
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~------------f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~V 106 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD------------FKRELQRNSAQIRECANYKGPPDPLKGDSLNEKV 106 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH------------HHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHH
Confidence 5778888888888999899999999999887542 34333322 22333333333 245579
Q ss_pred HHHHHHHHHHhCCCC
Q 009568 486 YEKAVKILETYWLEE 500 (532)
Q Consensus 486 ~~~a~~il~~~~~~~ 500 (532)
+..|.++++-.|+++
T Consensus 107 R~~A~El~~~if~~~ 121 (122)
T cd03572 107 REEAQELIKAIFSYS 121 (122)
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999999864
No 281
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=87.84 E-value=6.4 Score=36.92 Aligned_cols=155 Identities=19% Similarity=0.198 Sum_probs=89.1
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCC--ChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCCchh
Q 009568 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG--AVPIFVKLLAS----PSDDVREQAVWALGNVAGDSPRC 194 (532)
Q Consensus 121 ~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g--~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~~~~~~ 194 (532)
.+...+..-. ++-++-++..+.-++. ++.....+...+ +...+..++.. ..+..+-.++++++|+..... .
T Consensus 67 ~~~~~~~~Wp-~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~ 143 (268)
T PF08324_consen 67 LLLKILLSWP-PESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-G 143 (268)
T ss_dssp HHHHHHCCS--CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-C
T ss_pred HHHHHHHhCC-CccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-c
Confidence 3344443322 3446666666655555 444444443332 23344443322 567888899999999987655 4
Q ss_pred HHHHHhcC--ChHHHHHHhhhh---hhhHHHHHHHHHhhhccCCC-CCC-CcccccchHHHHHHhhc-C-CCHHHHHHHH
Q 009568 195 RDLVLSQG--ALIPLLAQLNER---AKLSMLRNATWTLSNFCRGK-PQP-PFDQVRPALPALAQLVH-S-NDEEVLTDAC 265 (532)
Q Consensus 195 ~~~~~~~~--~l~~L~~ll~~~---~~~~~~~~a~~~L~~L~~~~-~~~-~~~~~~~~l~~L~~lL~-~-~d~~v~~~a~ 265 (532)
+..+.... .+...+..+..+ .+..++..++..+.|++-.. ... .......++..+...+. . .|++....++
T Consensus 144 ~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~L 223 (268)
T PF08324_consen 144 RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLL 223 (268)
T ss_dssp HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence 55554432 233333333232 27788888888888887554 111 22233346666777443 2 5999999999
Q ss_pred HHHHHhccCChhH
Q 009568 266 WALSYLSDGTNDK 278 (532)
Q Consensus 266 ~~L~~l~~~~~~~ 278 (532)
-+++++...++..
T Consensus 224 vAlGtL~~~~~~~ 236 (268)
T PF08324_consen 224 VALGTLLSSSDSA 236 (268)
T ss_dssp HHHHHHHCCSHHH
T ss_pred HHHHHHhccChhH
Confidence 9999999665544
No 282
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=87.79 E-value=4.6 Score=48.79 Aligned_cols=267 Identities=14% Similarity=0.162 Sum_probs=138.7
Q ss_pred cCCChHHHHHHHHHHHHHhcCCCC-----CchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009568 84 WSDDSSLQLEATTQFRKLLSIERS-----PPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID 158 (532)
Q Consensus 84 ~s~~~~~~~~a~~~l~~l~~~~~~-----~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~ 158 (532)
...+.+.+..+...+..++..... +..-. ....++..+..+-....++.++......+. ...-.....
T Consensus 491 ~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~-~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~~laQ 563 (2341)
T KOG0891|consen 491 EADDSEIRKNAALTCCELLKYDIICSQTSPHALQ-VVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDAQLAQ 563 (2341)
T ss_pred hcccHHHHHHHHHHHHHHHhhhhhhhcccchHHH-HHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhhhhcC
Confidence 345677777777777766654211 00000 011223333332222222555554443333 222223444
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCC
Q 009568 159 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 238 (532)
Q Consensus 159 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~ 238 (532)
.+.+..+...+..+.-.+++.+...+++++..+|.+.-..+....+..+-.+- .+.-.-+...+..-+..+....+.-.
T Consensus 564 ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~-~sg~~r~~~~~a~~~~~~i~~~~~~i 642 (2341)
T KOG0891|consen 564 PDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELE-FSGMARTKEESAKLLCELIISSPVLI 642 (2341)
T ss_pred chhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhh-hcchHHhHHHHHHHhhHHHHHHHHHH
Confidence 45556666777777888999999999999886663322211111111111111 11111111111111111111101111
Q ss_pred cccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC-CCccchhhHHHHHHHhhcCC
Q 009568 239 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGD 317 (532)
Q Consensus 239 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~ 317 (532)
...+...+..++..+...+..+...+..+++.|+..........++ ..++.+...+.+ .+..-+..++++++++....
T Consensus 643 ~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~ 721 (2341)
T KOG0891|consen 643 SPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESST 721 (2341)
T ss_pred HhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhccc
Confidence 1223445567777777888888888899999988654433333444 455555555544 45667888999999998765
Q ss_pred cchhHHHhh-cCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 009568 318 DFQTQCIIT-YGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359 (532)
Q Consensus 318 ~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 359 (532)
........+ .-++..+...+.......++.++...++++...
T Consensus 722 ~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 722 GYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred ceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence 432222221 234556666666665677888888888876653
No 283
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.70 E-value=19 Score=40.86 Aligned_cols=61 Identities=20% Similarity=0.264 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009568 428 PRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETY 496 (532)
Q Consensus 428 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~ 496 (532)
.+.....+.+|..++...-+.-. ..|.|....++. ++-+..+..+.++++...|...+++.
T Consensus 1070 tet~~ltisgIaklf~e~fk~ll------nln~f~~vwe~l--l~flkrl~s~~s~e~slsai~~~qel 1130 (1610)
T KOG1848|consen 1070 TETSCLTISGIAKLFSENFKLLL------NLNGFLDVWEEL--LQFLKRLHSDISPEISLSAIKALQEL 1130 (1610)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHH------hcccHHHHHHHH--HHHHHHHHhcCChHhHHHHHHHHHHH
Confidence 45566777888888764433322 344466655543 66777788889999998888777664
No 284
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=87.44 E-value=8.9 Score=41.09 Aligned_cols=157 Identities=17% Similarity=0.211 Sum_probs=107.7
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 154 (532)
.|..++..|.|++..+...+-..+...+..++.+ -++..||...-+..+. .|+.+|..+-. +..+
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~l~~y~~~t~s~----~~~~il~~~~~--P~~K- 69 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDREP--------WLVNGLVDYYLSTNSQ----RALEILVGVQE--PHDK- 69 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH--------HHHHHHHHHHhhcCcH----HHHHHHHhcCC--ccHH-
Confidence 5788999999999998888888888887754222 1466777765544422 34455555433 2111
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (532)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~ 234 (532)
.++..|-..+.. +.-|-.++..|+.+....|..-..+.+...+..|+++|..+.+..+...|+.+|..|.-..
T Consensus 70 -----~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 70 -----HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred -----HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence 223455555653 5677889999999998777667788899999999999988889999999998888887654
Q ss_pred CCCCcccccchHHHHHHhh
Q 009568 235 PQPPFDQVRPALPALAQLV 253 (532)
Q Consensus 235 ~~~~~~~~~~~l~~L~~lL 253 (532)
|..-......++.+..+++
T Consensus 143 p~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 143 PSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred cchhhHHHHHHHHHHHHHH
Confidence 4433334445555555555
No 285
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.15 E-value=47 Score=35.71 Aligned_cols=395 Identities=13% Similarity=0.184 Sum_probs=190.7
Q ss_pred HHHhhhcCC--ChHHHHHHHHHHHHHhcCC---CCCchhHhhhC--CcHH-HHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 009568 78 AMVAGVWSD--DSSLQLEATTQFRKLLSIE---RSPPIEEVIQS--GVVP-RFVEFLMREDYPQLQFEAAWALTNIASGT 149 (532)
Q Consensus 78 ~lv~~L~s~--~~~~~~~a~~~l~~l~~~~---~~~~~~~~i~~--g~i~-~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~ 149 (532)
.+++.+.++ |+.++..|+..+.+.++.+ ..+....+.+. ..+. .++.++-+.. ..+|..--.+|+-++..+
T Consensus 41 ~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~-~~iQ~qlseal~~Ig~~D 119 (960)
T KOG1992|consen 41 LLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSP-FNIQKQLSEALSLIGKRD 119 (960)
T ss_pred HHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHhccc
Confidence 455555543 6889999999999998842 11111122221 1233 3455555554 688888888888888633
Q ss_pred -hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-CCchhHHH------HHh-cCChHHHHHHhhhh------
Q 009568 150 -SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG-DSPRCRDL------VLS-QGALIPLLAQLNER------ 214 (532)
Q Consensus 150 -~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~-~~~~~~~~------~~~-~~~l~~L~~ll~~~------ 214 (532)
|+....+ +|-|+.-+++.|-.+....+.+-..|.. -.+.+|.. ... .....++..++.+.
T Consensus 120 FP~kWptL-----l~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~ 194 (960)
T KOG1992|consen 120 FPDKWPTL-----LPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQR 194 (960)
T ss_pred cchhhHHH-----HHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhh
Confidence 3333322 4666666666554443333333332321 11111111 000 01223444444211
Q ss_pred --hhhH-------HHHHHHHHhhhccCCC-CCCCcccccchHHHHHHhhcCCC-------------HHHHHHHHHHHHHh
Q 009568 215 --AKLS-------MLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSND-------------EEVLTDACWALSYL 271 (532)
Q Consensus 215 --~~~~-------~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~~~d-------------~~v~~~a~~~L~~l 271 (532)
.+.. ++.-++.....|+..+ |.--.......++.+.+++..+. .+++...|..+.-.
T Consensus 195 ~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY 274 (960)
T KOG1992|consen 195 HANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLY 274 (960)
T ss_pred cccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHH
Confidence 1111 2223333444454443 22222334556666666665221 23455666666655
Q ss_pred ccCChhHHHHHHHhCchHHHHHhhCCCCc-----cchhhHHHHHHHhhcCCcc--------------------------h
Q 009568 272 SDGTNDKIQAVIEAGVCPRLVELLGHPSP-----SVLIPALRTVGNIVTGDDF--------------------------Q 320 (532)
Q Consensus 272 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-----~v~~~al~~L~nl~~~~~~--------------------------~ 320 (532)
+...++..+.++. .++...-.+|.+..+ .....|+..|.+++..... .
T Consensus 275 ~~kYeEef~~fl~-~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~e 353 (960)
T KOG1992|consen 275 ATKYEEEFQPFLP-DFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREE 353 (960)
T ss_pred HHhhHHHHHhhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchh
Confidence 5555555553333 334334445543222 2344556666666542211 1
Q ss_pred hHHHhhcCchHHHHHHhcCCCchhH-HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH-HHhc--CchhHHHHHHHHHH
Q 009568 321 TQCIITYGALPYLLGLLTHSHKKSI-KKEACWTISNITAGNRDQIQAVIDAGLVGPLVN-LLQN--AEFDIKKEAAWAIS 396 (532)
Q Consensus 321 ~~~~~~~~~l~~L~~lL~~~~~~~v-~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~-ll~~--~~~~v~~~a~~aL~ 396 (532)
-..+.+.+-+..+-+-|..+ |... |+.||-.+.-++......+..++.. .+..+++ ...+ .+..-+..|.+.+.
T Consensus 354 DeElFED~pleYiRRDlEGs-DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~-~v~~~l~~y~~nPS~nWk~kd~aiyL~t 431 (960)
T KOG1992|consen 354 DEELFEDNPLEYIRRDLEGS-DVDTRRRAAIDLVRGLCKNFEGQVTGVFSS-EVQRLLDQYSKNPSGNWKKKDRAIYLVT 431 (960)
T ss_pred hHHHhccCHHHHHHHhcccC-CcchhHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHhccCCCccccccchhhhhhH
Confidence 12233445566666666666 5444 5667778888887655555444433 2233333 2222 35566677777777
Q ss_pred HhhcCCCHH------------HHHHHHHcCChHHHHhhcC---CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHH
Q 009568 397 NATSGGTHE------------QIKYLVREGCIKPLCDLFV---CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQY 461 (532)
Q Consensus 397 nl~~~~~~~------------~~~~l~~~~~l~~L~~lL~---~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~ 461 (532)
.++..+... ...+ ....+++ ++++ ...|-+.. ++|.-++.+-... +
T Consensus 432 alaik~~t~~~Gvtstn~lvdv~~F-f~~~ilp---~L~s~~vn~~pilka---~aIKy~~~FR~ql----------~-- 492 (960)
T KOG1992|consen 432 ALAIKGQTAKHGVTSTNELVDVVDF-FANQILP---DLLSPNVNEFPILKA---DAIKYIYTFRNQL----------G-- 492 (960)
T ss_pred HHHhhcchhhcceeeccccccHHHH-HHHHhhH---HhccCccccccchhh---cccceeeeecccC----------C--
Confidence 776654211 0111 1111111 1222 11122222 2222222221111 1
Q ss_pred HHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCcc
Q 009568 462 AQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDD 502 (532)
Q Consensus 462 ~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~~~ 502 (532)
...+ ...+..+......+..-|+.+|...+++.+.-.++
T Consensus 493 ~~~l--m~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~ 531 (960)
T KOG1992|consen 493 KEHL--MALLPRLIRFLEAESRVVHSYAAIAIEKLLTVREN 531 (960)
T ss_pred hHHH--HHHHHHHHHhccCcchHHHHHHHHHHHhccccccC
Confidence 1111 22356677778888899999999999999887654
No 286
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=87.08 E-value=4.6 Score=34.94 Aligned_cols=87 Identities=16% Similarity=0.214 Sum_probs=65.3
Q ss_pred CCHHHHHHHHhcCchhHHHHHHHHHHHhhcC-CCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 009568 371 GLVGPLVNLLQNAEFDIKKEAAWAISNATSG-GTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEK 449 (532)
Q Consensus 371 ~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~-~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~ 449 (532)
-.+|.+++-+...+...+--|...+..+... +.......+- .++.+|...|.+.|+++...+|.+|..++..++...
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlP--qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLP--QLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 3678888888888888888888888888876 3333333332 378889999999999999999999999977766553
Q ss_pred hccCCCccchHHHHHH
Q 009568 450 NMGTATADVNQYAQLV 465 (532)
Q Consensus 450 ~~~~~~~~~~~~~~~~ 465 (532)
. ...+|...+
T Consensus 116 ~------aLvPyyrqL 125 (183)
T PF10274_consen 116 E------ALVPYYRQL 125 (183)
T ss_pred H------HHHHHHHHH
Confidence 2 455666554
No 287
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=86.70 E-value=2 Score=35.74 Aligned_cols=74 Identities=11% Similarity=0.072 Sum_probs=60.4
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~ 147 (532)
+.+..+.+.|+++++.++..|+..|..++..-.......+...+++..|+.++....++.++..++..+...+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 56788889999999999999999999988864344566677888999999999854448899999888887764
No 288
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=86.36 E-value=6.4 Score=37.22 Aligned_cols=72 Identities=13% Similarity=0.157 Sum_probs=49.3
Q ss_pred CchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchh-HHHhhcCchHHHHHHhcC-----------CCchhHHHHHHHHH
Q 009568 286 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT-QCIITYGALPYLLGLLTH-----------SHKKSIKKEACWTI 353 (532)
Q Consensus 286 ~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~-~~~~~~~~l~~L~~lL~~-----------~~~~~v~~~a~~~L 353 (532)
-++|.++.++++.++.++..++.+|..+....+... ..+...|..+.+...+.. .+...+-..|.-++
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 478999999999999999999999999998655332 235566665555444321 11445666666666
Q ss_pred HHHh
Q 009568 354 SNIT 357 (532)
Q Consensus 354 ~nl~ 357 (532)
..++
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 6663
No 289
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=86.25 E-value=6.1 Score=32.88 Aligned_cols=74 Identities=11% Similarity=0.027 Sum_probs=60.2
Q ss_pred CHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhh
Q 009568 372 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV-CPDPRIVTVCLEGLENILKVG 445 (532)
Q Consensus 372 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~d~~v~~~al~~L~~l~~~~ 445 (532)
.+..|..-+.++++.++..|+..|-.++.++....-..+...+.+..|..++. ..++.|+..++..+.......
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 45567777888999999999999999999877777777778889999999887 567789999888887776543
No 290
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=85.80 E-value=4.9 Score=33.53 Aligned_cols=72 Identities=15% Similarity=0.221 Sum_probs=58.7
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHH
Q 009568 415 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH-DNNEIYEKAVKIL 493 (532)
Q Consensus 415 ~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~-~~~~v~~~a~~il 493 (532)
++..|..-|.++++.++..+|..|..+++.+... |...+...+.++.|..+... .++.|+.++..+|
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~------------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li 105 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR------------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVV 105 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 5667777788899999999999999999876542 56666677788888888766 8899999999999
Q ss_pred HHhCC
Q 009568 494 ETYWL 498 (532)
Q Consensus 494 ~~~~~ 498 (532)
..+-.
T Consensus 106 ~~W~~ 110 (144)
T cd03568 106 KQWAD 110 (144)
T ss_pred HHHHH
Confidence 98743
No 291
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.72 E-value=39 Score=38.80 Aligned_cols=73 Identities=11% Similarity=0.166 Sum_probs=55.5
Q ss_pred cCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009568 327 YGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG 401 (532)
Q Consensus 327 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 401 (532)
.+++|.|..-|.+. +..+|..|...+|.+......+.. =-...+....+.-+.+.+.+||.+++....++...
T Consensus 258 ~~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred HHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence 47888888888888 899999999999999875444332 00123455666666777899999999999988876
No 292
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=85.66 E-value=19 Score=31.64 Aligned_cols=71 Identities=21% Similarity=0.277 Sum_probs=55.7
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 009568 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194 (532)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 194 (532)
.++.++++..+++ ..++..|+.++.-+....--+-. .++|.|+.+..++++.++..|...+..+....+..
T Consensus 9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 5677778777887 89999999999888763322211 25799999999999999999999999997655543
No 293
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=85.31 E-value=51 Score=34.34 Aligned_cols=58 Identities=19% Similarity=0.303 Sum_probs=45.1
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 009568 85 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147 (532)
Q Consensus 85 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~ 147 (532)
+.++.+....+..+...+. .-|.+.+.+.+++..+..-+.+. |+.|..++.||+.++.
T Consensus 204 ~~~~SLi~ATLesllrfl~---wiPl~yIfeTnIieLv~~~f~s~--pd~r~~tl~CLtEi~~ 261 (1053)
T COG5101 204 SRDESLIEATLESLLRFLE---WIPLDYIFETNIIELVLEHFNSM--PDTRVATLSCLTEIVD 261 (1053)
T ss_pred cCChHHHHHHHHHHHHHHh---hCchhHHHHHHHHHHHHHHhccC--CchhHHHHHHHHHHHh
Confidence 5577777777888877764 57888888989999888776653 4678888889888876
No 294
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=85.06 E-value=4.1 Score=36.67 Aligned_cols=85 Identities=18% Similarity=0.248 Sum_probs=61.7
Q ss_pred cchhhHHHHHHHhhcCCcchhHHHhhc-------CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HcCC
Q 009568 301 SVLIPALRTVGNIVTGDDFQTQCIITY-------GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI-DAGL 372 (532)
Q Consensus 301 ~v~~~al~~L~nl~~~~~~~~~~~~~~-------~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~ 372 (532)
.-+..|+.+|+.|+-... ..+.++.. .++..|.+++...+++..|+-|.-.|++++.++......+. +.+.
T Consensus 139 SPqrlaLEaLcKLsV~e~-NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIEN-NVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhheecc-CcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 347779999999986332 33333322 35667777777776888999999999999998776665544 6788
Q ss_pred HHHHHHHHhcCchh
Q 009568 373 VGPLVNLLQNAEFD 386 (532)
Q Consensus 373 i~~L~~ll~~~~~~ 386 (532)
|..|+.+++..+..
T Consensus 218 i~~Li~FiE~a~~~ 231 (257)
T PF12031_consen 218 ISHLIAFIEDAEQN 231 (257)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876433
No 295
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=84.83 E-value=19 Score=28.98 Aligned_cols=87 Identities=20% Similarity=0.237 Sum_probs=59.9
Q ss_pred HHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc-CChHHHHhhcCCCCH--
Q 009568 352 TISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE-GCIKPLCDLFVCPDP-- 428 (532)
Q Consensus 352 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~l~~L~~lL~~~d~-- 428 (532)
-|.+++..++..... ++..|..-|++.++.|+..++..|..++..|++.+...+... ..|..+.++-..+|+
T Consensus 24 Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~ 98 (122)
T cd03572 24 EIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLK 98 (122)
T ss_pred HHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCccc
Confidence 445555554444433 456788888888999999999999999999988887776643 445555555443332
Q ss_pred ------HHHHHHHHHHHHHHH
Q 009568 429 ------RIVTVCLEGLENILK 443 (532)
Q Consensus 429 ------~v~~~al~~L~~l~~ 443 (532)
.|+..|-+++..|+.
T Consensus 99 Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 99 GDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred CcchhHHHHHHHHHHHHHHhc
Confidence 477777777777764
No 296
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=84.30 E-value=46 Score=40.93 Aligned_cols=255 Identities=15% Similarity=0.077 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH---HHH--hcCChHHHHH
Q 009568 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD---LVL--SQGALIPLLA 209 (532)
Q Consensus 135 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~---~~~--~~~~l~~L~~ 209 (532)
...|.+.+.++-.........+- ..+...+...+.+++..+...++.+......+.+ ... ....+..+..
T Consensus 461 ~~~a~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~ 535 (2341)
T KOG0891|consen 461 IQLAFKTLGGFKFSGYSLTLFVQ-----QCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLT 535 (2341)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHH-----HHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHH
Confidence 44466777666552222211111 2234455667888888887666655432221110 001 1122333333
Q ss_pred HhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchH
Q 009568 210 QLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 289 (532)
Q Consensus 210 ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 289 (532)
+-..++++.++......+. ............+..+...++...-.++..+...+++++..++...-..+....+.
T Consensus 536 ~aia~~~~~i~~~v~~~l~-----~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~ 610 (2341)
T KOG0891|consen 536 VAIADTDPDIRIRVLSSLN-----ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLE 610 (2341)
T ss_pred HhccCCCcchhhhHHhhhc-----cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHH
Confidence 3333444444433332222 11111122233444455555666667788888888888877664433333322222
Q ss_pred HHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009568 290 RLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369 (532)
Q Consensus 290 ~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 369 (532)
.+-.+..+....+...+..-+..+..+.+......++ ..+..++..+... +..+.+.+..+++.+|.-+.+......+
T Consensus 611 ~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~-~~l~~~~~~~~~~-~s~~~~~~~~~~~eL~~v~g~~~~~~~~ 688 (2341)
T KOG0891|consen 611 LLTELEFSGMARTKEESAKLLCELIISSPVLISPYVG-PILLVLLPKLQDP-SSGVEKAVLETIGELCAVGGEEMVKWVD 688 (2341)
T ss_pred HhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcC-chHHHHHHHHhcc-chhhHHHHHHHHHHHHHhccchhhhccc
Confidence 2222222222222222333333333323322222222 4556777788887 7889999999999999833332333334
Q ss_pred cCCHHHHHHHHhc-CchhHHHHHHHHHHHhhcCC
Q 009568 370 AGLVGPLVNLLQN-AEFDIKKEAAWAISNATSGG 402 (532)
Q Consensus 370 ~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~ 402 (532)
..++.+.+.+.. +...-+..+.+++.++....
T Consensus 689 -~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~ 721 (2341)
T KOG0891|consen 689 -ELFSLIIKMLQDQSSLGKRLAALKALGQLESST 721 (2341)
T ss_pred -hHHHHHHHHHHHhhhhhchhHHHHHhhhhhccc
Confidence 455666665554 35667788999999998754
No 297
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.05 E-value=58 Score=38.56 Aligned_cols=231 Identities=16% Similarity=0.079 Sum_probs=117.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHH
Q 009568 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDL 197 (532)
Q Consensus 119 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~ 197 (532)
+..++..|..++ |..+..+..+++.++..-++. .++ .+....++.-+.+ .++..|.--..+++.+-.+....-..
T Consensus 878 ~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~~--~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 878 LTLIVNSLINPN-PKLRCAAAEALARLAQVVGSA--PFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHhhhhccCC-hHHHHHHHHHHHHHHHhcccc--chH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 444555556666 788888888888877621111 011 1223455555555 45555554455555553222111111
Q ss_pred HHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCC---HHHHHHH----------
Q 009568 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSND---EEVLTDA---------- 264 (532)
Q Consensus 198 ~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d---~~v~~~a---------- 264 (532)
-.....+..++.+-.++.++.++..++.++..+...........+...+..+..++.+.. .++...-
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence 112234566777775666779999999999888876522223444555555555554321 2222111
Q ss_pred ---HHHHHHhccCChh-HHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCC
Q 009568 265 ---CWALSYLSDGTND-KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS 340 (532)
Q Consensus 265 ---~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~ 340 (532)
..+++.=...+.. ..-..+....+-...-++.++++-++..+..++-++-...+.... -.-+++.+..++.++
T Consensus 1034 ~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s~ 1110 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSSS 1110 (2067)
T ss_pred HHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcch
Confidence 1112111111111 011122223344444456777888999999999998876663221 113455666666655
Q ss_pred CchhHHHHHHHHHHHHh
Q 009568 341 HKKSIKKEACWTISNIT 357 (532)
Q Consensus 341 ~~~~v~~~a~~~L~nl~ 357 (532)
.--.|+....++..+.
T Consensus 1111 -~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1111 -YLILRRASFSCLRQLV 1126 (2067)
T ss_pred -hhhhhhhHHhhhhHHh
Confidence 3334444444444443
No 298
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.88 E-value=67 Score=34.61 Aligned_cols=184 Identities=13% Similarity=0.110 Sum_probs=87.2
Q ss_pred ccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhC-chH-------HHHHhhCCCCccchhhHHHHHH
Q 009568 240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAG-VCP-------RLVELLGHPSPSVLIPALRTVG 311 (532)
Q Consensus 240 ~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-~l~-------~L~~lL~~~~~~v~~~al~~L~ 311 (532)
.....++|.+++.|+.+..-+-.+|+.++-.+..-.+..-..+...+ +.| .|+..++.+...--....+++.
T Consensus 494 ~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaIm 573 (960)
T KOG1992|consen 494 EHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIM 573 (960)
T ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHH
Confidence 34457889999999998888988998888766532222111122222 222 2222233332222223333333
Q ss_pred HhhcCCcchhHHHhh---cCchHHHHHHhcCCCchhHHH---HHHHHHHHH-hcCCHHHHHHHHHcCCHHHHHHHHhcCc
Q 009568 312 NIVTGDDFQTQCIIT---YGALPYLLGLLTHSHKKSIKK---EACWTISNI-TAGNRDQIQAVIDAGLVGPLVNLLQNAE 384 (532)
Q Consensus 312 nl~~~~~~~~~~~~~---~~~l~~L~~lL~~~~~~~v~~---~a~~~L~nl-~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 384 (532)
.+..-.++.+..... .++-+.+...-+++.+|..-. ++..++-+. +..++..+..+. ..++|.+...+..+-
T Consensus 574 Rii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e-~aL~p~fq~Il~eDI 652 (960)
T KOG1992|consen 574 RIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLE-EALFPVFQTILSEDI 652 (960)
T ss_pred HHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHH-HHHHHHHHHHHHHHH
Confidence 333322222211111 122223333334443443333 333333333 334555444433 347777777777664
Q ss_pred hhHHHHHHHHHHHhhcCC---CHHHH---------HHHH-HcCChHHHHhhcC
Q 009568 385 FDIKKEAAWAISNATSGG---THEQI---------KYLV-REGCIKPLCDLFV 424 (532)
Q Consensus 385 ~~v~~~a~~aL~nl~~~~---~~~~~---------~~l~-~~~~l~~L~~lL~ 424 (532)
.+.--.+...++-+.... -++.. +.++ ..|-+++++.+|.
T Consensus 653 ~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~ 705 (960)
T KOG1992|consen 653 QEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQ 705 (960)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHH
Confidence 555555555555544322 11211 2233 2577888888775
No 299
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=83.85 E-value=34 Score=31.47 Aligned_cols=90 Identities=18% Similarity=0.220 Sum_probs=52.7
Q ss_pred hCCChHHHHHhhCCCCHH--------HHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhh-hhhHHHHHHHHHhh
Q 009568 158 DHGAVPIFVKLLASPSDD--------VREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER-AKLSMLRNATWTLS 228 (532)
Q Consensus 158 ~~g~i~~L~~lL~~~~~~--------v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~~a~~~L~ 228 (532)
+..+++.++++++.++.. +.+....++..+ -.|-+..|..++.+. .+.-++..++.+|.
T Consensus 71 e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv------------~~G~~~~L~~li~~~~~~~yvR~aa~~aL~ 138 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASV------------GDGDIEPLKELIEDPDADEYVRMAAISALA 138 (249)
T ss_pred hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHH------------hCCCHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 346789999999765432 122222222222 345577777777433 36678888999999
Q ss_pred hccCCCCCCCcccccchHHHHHHhhcCCCHH
Q 009568 229 NFCRGKPQPPFDQVRPALPALAQLVHSNDEE 259 (532)
Q Consensus 229 ~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~ 259 (532)
.+....+......+.-+-..+-..+..++..
T Consensus 139 ~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~ 169 (249)
T PF06685_consen 139 FLVHEGPISREEVIQYFRELLNYFLERNPSF 169 (249)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHhccCchH
Confidence 9998876555444433333443435444444
No 300
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=83.22 E-value=44 Score=32.02 Aligned_cols=154 Identities=12% Similarity=0.063 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhCC-----------ChHHHHHhhC------CCCHHHHHHHHHHHHHhhCCCchh
Q 009568 132 PQLQFEAAWALTNIASGTSENTKVVIDHG-----------AVPIFVKLLA------SPSDDVREQAVWALGNVAGDSPRC 194 (532)
Q Consensus 132 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g-----------~i~~L~~lL~------~~~~~v~~~a~~~L~nl~~~~~~~ 194 (532)
-++|..|+.|+.....++++.+..+++.- ....|+..|- +.++--..-|+.+|..+..+++..
T Consensus 52 f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~~ 131 (312)
T PF04869_consen 52 FDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPEA 131 (312)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHHH
Confidence 68999999999999998999888877521 1112333332 122322334445555555555554
Q ss_pred HHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc-----CCCHHHHHHHHHHHH
Q 009568 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-----SNDEEVLTDACWALS 269 (532)
Q Consensus 195 ~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~-----~~d~~v~~~a~~~L~ 269 (532)
|+.+..- ........ ......++.+..+|. ..++.++.--+..|+
T Consensus 132 Ke~al~V--------------------------~~~~~~~g----e~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~ 181 (312)
T PF04869_consen 132 KEQALRV--------------------------TEGDESSG----EEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLI 181 (312)
T ss_dssp HHHHTT----------------------------EE--STT----S--EEHHHHHHHHTTT----T--HHHHHHHHHHHH
T ss_pred HHHHHcc--------------------------cCCCCCCC----CCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Confidence 4443321 00011101 111223444444332 346777777777777
Q ss_pred HhccCChhHHHHHHHh-CchHHHHHhhCC-C--CccchhhHHHHHHHhhc
Q 009568 270 YLSDGTNDKIQAVIEA-GVCPRLVELLGH-P--SPSVLIPALRTVGNIVT 315 (532)
Q Consensus 270 ~l~~~~~~~~~~~~~~-~~l~~L~~lL~~-~--~~~v~~~al~~L~nl~~ 315 (532)
....+++..+..++.. ..++.|+..... + +.-++--++..||-+..
T Consensus 182 ~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 182 VWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp HHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 7666777777777766 478888887533 2 33345555555665544
No 301
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=83.06 E-value=41 Score=31.48 Aligned_cols=187 Identities=17% Similarity=0.230 Sum_probs=102.1
Q ss_pred hhccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009568 72 KLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE 151 (532)
Q Consensus 72 ~~~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 151 (532)
-++.+..|...|+.+|+..+ ...+++... .+++..++|.|+..=. + +.+-..++..|.+++. |-
T Consensus 11 cl~~LkdL~r~lr~dd~~~~-~v~r~lg~~----------~iv~~DLiPiL~~~~~--~-~~l~~~~l~LLV~LT~--P~ 74 (266)
T PF04821_consen 11 CLECLKDLKRFLRRDDEDQR-DVRRQLGEW----------NIVQKDLIPILISYKD--D-DKLFLACLRLLVNLTW--PI 74 (266)
T ss_pred HHHHHHHHHHHHHHhCcchH-HHHHHHHHh----------chhhhhHHHHHHhccC--c-hHHHHHHHHHHHHhCC--CH
Confidence 45678888888888877665 344444332 1455668887776533 4 7899999999999987 11
Q ss_pred hHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhh----------hhhhhHH
Q 009568 152 NTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN----------ERAKLSM 219 (532)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~----------~~~~~~~ 219 (532)
.+- ... .+..-+.........+. .++..+...+++..++.++. ...+..+
T Consensus 75 -------------~~~-~~~~~~~~~~~~~~~~l~~~l~----~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~i 136 (266)
T PF04821_consen 75 -------------ELL-VESQPKDKNQRRNIPELLKYLQ----SYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLI 136 (266)
T ss_pred -------------HHh-ccCCCCChHHHHHHHHHHHHHH----HHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHH
Confidence 110 111 12222222222222222 24455555555565555542 2235667
Q ss_pred HHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCC-
Q 009568 220 LRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP- 298 (532)
Q Consensus 220 ~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~- 298 (532)
.+.++..+.|+..-++.+....... .+...+...+|+ +.+.|+...|+.+.++.
T Consensus 137 i~lvL~LiRNlL~Ip~~~~~~~~~~-----------~~~~~~d~li~~--------------l~~~~v~~lLL~l~s~~~ 191 (266)
T PF04821_consen 137 IELVLTLIRNLLAIPDPPSASKRSD-----------EDSSLHDQLIWA--------------LFESGVLDLLLTLASSPQ 191 (266)
T ss_pred HHHHHHHHHHHhcCCCCcccccccc-----------hhHHHHHHHHHH--------------HHHcCHHHHHHHHHhCcc
Confidence 7778888888877643222111111 223334444433 34457777888777765
Q ss_pred CccchhhHHHHHHHhhcCC
Q 009568 299 SPSVLIPALRTVGNIVTGD 317 (532)
Q Consensus 299 ~~~v~~~al~~L~nl~~~~ 317 (532)
........+.++..+..+.
T Consensus 192 ~~~f~~~lLEIi~ll~k~~ 210 (266)
T PF04821_consen 192 ESDFNLLLLEIIYLLFKGQ 210 (266)
T ss_pred ccchhhHHHHHHHHHHcCC
Confidence 3334445566666655543
No 302
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=83.06 E-value=11 Score=30.86 Aligned_cols=74 Identities=8% Similarity=-0.037 Sum_probs=59.4
Q ss_pred CHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC---CCHHHHHHHHHHHHHHHHhh
Q 009568 372 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC---PDPRIVTVCLEGLENILKVG 445 (532)
Q Consensus 372 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~---~d~~v~~~al~~L~~l~~~~ 445 (532)
.+..|-.-|.++++.++..|+..|-.+..++...+...+.....+..|..++.. .++.|+..++..+...-...
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 355677778889999999999999999998887776776776777778888875 47789999988888776543
No 303
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=82.99 E-value=20 Score=34.65 Aligned_cols=182 Identities=13% Similarity=0.146 Sum_probs=104.5
Q ss_pred cchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHH-Hh---cCC----CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 009568 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG-LL---THS----HKKSIKKEACWTISNITAGNRDQIQAVIDAGL 372 (532)
Q Consensus 301 ~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~-lL---~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 372 (532)
.++...++.+.......+.. .. +...++|.++. +| +.+ .+++|-.-...++..+-....+.+..+++. +
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~-~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~-v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDP-EE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEA-V 118 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-H-HH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhccCCH-HH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHH-H
Confidence 36777888888887765533 22 34466676666 33 222 133333333333334433223334445543 5
Q ss_pred HHHHHHHHhcC---chhHHHHHHHHHHHhhcCC-------CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 009568 373 VGPLVNLLQNA---EFDIKKEAAWAISNATSGG-------THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL 442 (532)
Q Consensus 373 i~~L~~ll~~~---~~~v~~~a~~aL~nl~~~~-------~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~ 442 (532)
+...+.++..+ -|+.|..-...|..+.... ++++... ++..++-.+++.+.++...++.++..++
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~-----~idsi~wg~kh~~~~I~~~~L~~l~~ll 193 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKL-----VIDSIVWGFKHTNREISETGLNILLELL 193 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 66677777654 4688877777777766532 2222222 5667777788999999999999999999
Q ss_pred HhhhhhhhccCCCccchHHHHHHHHhccHHHH----HHHhcCCCHHHHHHHHHHHHHhCCC
Q 009568 443 KVGEAEKNMGTATADVNQYAQLVEEAEGLEKI----ENLQSHDNNEIYEKAVKILETYWLE 499 (532)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l----~~L~~~~~~~v~~~a~~il~~~~~~ 499 (532)
....+.. ..+...+-+...++.+ .-+....+....+....++..+|.-
T Consensus 194 ~~~~~~~---------~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ 245 (319)
T PF08767_consen 194 NNVSKTN---------PEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRL 245 (319)
T ss_dssp HHHHH-S---------HHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHH
T ss_pred HHHHhcC---------HHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHH
Confidence 8877611 1123333333333333 4445556666667777888888854
No 304
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=82.97 E-value=3.7 Score=33.74 Aligned_cols=74 Identities=11% Similarity=0.022 Sum_probs=57.5
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHH-HHHHHHHHHHHHhc
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQFEAAWALTNIAS 147 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~-~~~~a~~~L~~l~~ 147 (532)
+.+..+.+.|+++++.++..|+..|-.++.....+....+....++..|+.++....... ++..++..+...+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 467788888899999999999999999888643445566667888999999888755333 88888877777654
No 305
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=82.84 E-value=27 Score=30.33 Aligned_cols=72 Identities=17% Similarity=0.201 Sum_probs=54.0
Q ss_pred CchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009568 328 GALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG 401 (532)
Q Consensus 328 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 401 (532)
..+|.+..-|... +...+--|...+..+... ..+.+-.++.. ++..|-..|.+.++++...++.+|..++..
T Consensus 38 ~~Lpif~dGL~Et-~~Py~flA~~g~~dll~~~~~~kilPvlPq-LI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 38 HYLPIFFDGLRET-EHPYRFLARQGIKDLLERGGGEKILPVLPQ-LIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred hHHHHHHhhhhcc-CccHHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 5677788878777 555666777777766653 55656566543 778888899999999999999999999553
No 306
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=82.64 E-value=5.9 Score=32.57 Aligned_cols=74 Identities=16% Similarity=0.096 Sum_probs=58.1
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCC--CCHHHHHHHHHHHHHHhc
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE--DYPQLQFEAAWALTNIAS 147 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~--~~~~~~~~a~~~L~~l~~ 147 (532)
+.+..+.+.|+++++.++..|+..|-.++.....+....+.....+..|+.++... .++.++..++..+...+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999999998865333455555657888899999763 337899999988888765
No 307
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=82.60 E-value=16 Score=36.73 Aligned_cols=144 Identities=10% Similarity=0.085 Sum_probs=80.7
Q ss_pred CchHHHHHHhcCCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCH
Q 009568 328 GALPYLLGLLTHSH---KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH 404 (532)
Q Consensus 328 ~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~ 404 (532)
.+-..|..+|.... ++.++...+.+|.-|-..+.-. -..++..++.++..++...|.-+..-+...+.+.+.
T Consensus 16 ~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~~i~-----~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~ 90 (616)
T KOG2229|consen 16 NFPSELKDLLRTNHTVLPPELREKIVKALILLRNKNLIV-----AEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINK 90 (616)
T ss_pred hhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCcCC-----HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHh
Confidence 34445666775432 5788888888877665432111 122566778888888877776555444333322111
Q ss_pred HHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHH
Q 009568 405 EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNE 484 (532)
Q Consensus 405 ~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~ 484 (532)
....-=+...+-..+..+|+.+|+.--..++..+..+-+.+... +...+..+-.-.-|.++.
T Consensus 91 ~~kn~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~iW~------------------d~~tV~i~~~acf~~~~k 152 (616)
T KOG2229|consen 91 KHKNDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRNIWN------------------DSKTVNIITTACFSKVPK 152 (616)
T ss_pred hcccchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcccc------------------cchhHHHHHHHHhccCcH
Confidence 11111011123346677899999876667777777666554332 122233344447788888
Q ss_pred HHHHHHHHHH
Q 009568 485 IYEKAVKILE 494 (532)
Q Consensus 485 v~~~a~~il~ 494 (532)
|.-.+...+-
T Consensus 153 i~vs~l~FfL 162 (616)
T KOG2229|consen 153 ILVSGLRFFL 162 (616)
T ss_pred HHHhhhHHhc
Confidence 8776665433
No 308
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=81.96 E-value=4.7 Score=33.34 Aligned_cols=74 Identities=9% Similarity=0.006 Sum_probs=58.6
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcC-----CCCHHHHHHHHHHHHHHhc
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR-----EDYPQLQFEAAWALTNIAS 147 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~-----~~~~~~~~~a~~~L~~l~~ 147 (532)
+.+..+.+.|+++++.+++.|+..|-.++..-.......+...+++..|++++.. ..++.++..++..+...+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4678888899999999999999999999886544556667788899999999963 1237899988888777664
No 309
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=81.95 E-value=17 Score=34.32 Aligned_cols=116 Identities=19% Similarity=0.244 Sum_probs=74.6
Q ss_pred CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHH-HHHHHcCCHHHHHHH----Hh--------cCchhHHHHHHHH
Q 009568 328 GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI-QAVIDAGLVGPLVNL----LQ--------NAEFDIKKEAAWA 394 (532)
Q Consensus 328 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~-~~l~~~~~i~~L~~l----l~--------~~~~~v~~~a~~a 394 (532)
-++|.++.++.+. ++.+|..+|.+|..+....+... ..+...|+.+.+.+. +. .....+-..|.-|
T Consensus 119 liiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 119 LIIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred HHHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 4689999999998 99999999999999987544322 224566665444443 33 2345677777777
Q ss_pred HHHhhcC-------CCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568 395 ISNATSG-------GTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 444 (532)
Q Consensus 395 L~nl~~~-------~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~ 444 (532)
|..++.. ........++..|++..+...-+.+.+.++...++.+..++..
T Consensus 198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~ 254 (282)
T PF10521_consen 198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDE 254 (282)
T ss_pred HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHH
Confidence 7777431 1223334444555555554444445688888888877777654
No 310
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=79.88 E-value=17 Score=27.95 Aligned_cols=93 Identities=14% Similarity=0.159 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhHhh-hCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 009568 89 SLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK 167 (532)
Q Consensus 89 ~~~~~a~~~l~~l~~~~~~~~~~~~i-~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ 167 (532)
+++..|+..+..=+... --....+. ...++..|++.++.++ +..+..++..+..++. ++.....+.+-|+...|-+
T Consensus 2 EIR~RAL~~I~~Kl~~~-Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~k 78 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHG-LISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSK 78 (98)
T ss_pred hHHHHHHHHHHHHHHhc-cccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHH
Confidence 35555555554333321 12222233 4567888888888888 5688899999999888 6777788888899888776
Q ss_pred hhCCCCHHHHHHHHHHH
Q 009568 168 LLASPSDDVREQAVWAL 184 (532)
Q Consensus 168 lL~~~~~~v~~~a~~~L 184 (532)
+=..-++..+...-.++
T Consensus 79 lr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 79 LRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHhcCCHHHHHHHHHHH
Confidence 66555666655544443
No 311
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.09 E-value=44 Score=38.14 Aligned_cols=97 Identities=15% Similarity=0.112 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhh---h---hhhhHHHHHHHHHhhhccCCC-CCCCccccc
Q 009568 171 SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN---E---RAKLSMLRNATWTLSNFCRGK-PQPPFDQVR 243 (532)
Q Consensus 171 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~---~---~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~ 243 (532)
.+..+++.....++.++....-+ .++ .| .+.+++.+. . .....+.+.+..+|.-++.+. +..+.....
T Consensus 853 ~~~~evr~~sl~~l~silet~ge---~ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~ 927 (1610)
T KOG1848|consen 853 SRGVEVRISSLEALVSILETVGE---HLL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL 927 (1610)
T ss_pred CccceeeHHHHHHHHHHHhccch---hhc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH
Confidence 35667777777788777543211 111 12 444444442 1 124567777778888777776 666666677
Q ss_pred chHHHHHHhhcC-CCHHHHHHHHHHHHHhc
Q 009568 244 PALPALAQLVHS-NDEEVLTDACWALSYLS 272 (532)
Q Consensus 244 ~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~ 272 (532)
+++..+...-.. .|..+--.|+..++.++
T Consensus 928 ~lidtl~~fs~QktdlNISltAi~lfWtvs 957 (1610)
T KOG1848|consen 928 DLIDTLLVFSRQKTDLNISLTAIGLFWTVS 957 (1610)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHHH
Confidence 788877776653 46666666665555554
No 312
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=78.81 E-value=86 Score=32.52 Aligned_cols=161 Identities=12% Similarity=-0.026 Sum_probs=92.3
Q ss_pred chHHHHHHhcCC-CchhHHHHHHHHH---HHHhc-CCHHHH---HHHHHcCCHHHHHH----HHhcCchhHHHHHHHHHH
Q 009568 329 ALPYLLGLLTHS-HKKSIKKEACWTI---SNITA-GNRDQI---QAVIDAGLVGPLVN----LLQNAEFDIKKEAAWAIS 396 (532)
Q Consensus 329 ~l~~L~~lL~~~-~~~~v~~~a~~~L---~nl~~-~~~~~~---~~l~~~~~i~~L~~----ll~~~~~~v~~~a~~aL~ 396 (532)
++..+..-|.+. .+..++..+...+ ..... ..+..+ ...+..++.|.+-. --...+...|..+..+|+
T Consensus 320 ~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG 399 (501)
T PF13001_consen 320 ILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLG 399 (501)
T ss_pred HHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHH
Confidence 333444444333 1346666665555 44444 233333 33344555555410 011246789999999999
Q ss_pred HhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHH
Q 009568 397 NATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIEN 476 (532)
Q Consensus 397 nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~ 476 (532)
.++.....-.. -+-+++..|.+-|+.++++++..+-++|..+.......... ...... ......+..
T Consensus 400 ~L~~~~p~l~~---~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~-------~~~~~~---~~~~~l~~~ 466 (501)
T PF13001_consen 400 LLAKRAPSLFS---KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDD-------EDEQKR---LLLELLLLS 466 (501)
T ss_pred HHHccCccccc---ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccc-------hhHHHH---HHHHHHHHh
Confidence 99987532211 12356888888888899999999999999998765442110 000000 000112222
Q ss_pred HhcCCCHHHHHHHHHHHHHhCCCCcc
Q 009568 477 LQSHDNNEIYEKAVKILETYWLEEDD 502 (532)
Q Consensus 477 L~~~~~~~v~~~a~~il~~~~~~~~~ 502 (532)
...+....++..|.+-....|+.++.
T Consensus 467 ~~~~~~~~~R~~avk~an~~fpf~d~ 492 (501)
T PF13001_consen 467 YIQSEVRSCRYAAVKYANACFPFSDV 492 (501)
T ss_pred hccchhHHHHHHHHHHHHHhCCccch
Confidence 23456666888888888999987764
No 313
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=78.63 E-value=31 Score=33.59 Aligned_cols=209 Identities=20% Similarity=0.151 Sum_probs=106.4
Q ss_pred CCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 009568 116 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195 (532)
Q Consensus 116 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 195 (532)
..++..|..++..+.++......+.+|+.-+..- ..-+...++..+.+-+.+..+.+|..-+..++.+........
T Consensus 21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~ 96 (339)
T PF12074_consen 21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSD 96 (339)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCch
Confidence 3466777777776655666666666666544311 001122345666777777666689888888888764111100
Q ss_pred HHHHhcCChHHHHHHhhhh---hhhHHH---HHHHHHhhhccCCC-----------------CCCCcccccchHHHHHHh
Q 009568 196 DLVLSQGALIPLLAQLNER---AKLSML---RNATWTLSNFCRGK-----------------PQPPFDQVRPALPALAQL 252 (532)
Q Consensus 196 ~~~~~~~~l~~L~~ll~~~---~~~~~~---~~a~~~L~~L~~~~-----------------~~~~~~~~~~~l~~L~~l 252 (532)
....-..+++.|+..+..- +-+... -.++.++..++... +.+.+.... ++
T Consensus 97 ~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~-------kv 169 (339)
T PF12074_consen 97 SLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSE-------KV 169 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCH-------HH
Confidence 1111223567777776321 111100 01111111111111 011111000 22
Q ss_pred hcC-CCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCC--CccchhhHHHHHHHhhcCCcchhHHHhhcCc
Q 009568 253 VHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP--SPSVLIPALRTVGNIVTGDDFQTQCIITYGA 329 (532)
Q Consensus 253 L~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~ 329 (532)
+.. .+++.....+.++..+..........-.....-..++.++.++ .+.+|..|+.++..+....+.. +...+
T Consensus 170 yskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~l 245 (339)
T PF12074_consen 170 YSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSL 245 (339)
T ss_pred HhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHH
Confidence 222 4455555666666665544332211111223456677778777 8899999999999998877743 33345
Q ss_pred hHHHHHHhcC
Q 009568 330 LPYLLGLLTH 339 (532)
Q Consensus 330 l~~L~~lL~~ 339 (532)
+..+-..+..
T Consensus 246 i~~l~~~l~~ 255 (339)
T PF12074_consen 246 ISGLWKWLSS 255 (339)
T ss_pred HHHHHHHHHh
Confidence 5556666643
No 314
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=77.86 E-value=28 Score=36.01 Aligned_cols=213 Identities=15% Similarity=0.111 Sum_probs=112.7
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhc--C--------CCCHHHHHHHHHHHHHHhc--CChhhHH
Q 009568 87 DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLM--R--------EDYPQLQFEAAWALTNIAS--GTSENTK 154 (532)
Q Consensus 87 ~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~--~--------~~~~~~~~~a~~~L~~l~~--~~~~~~~ 154 (532)
+.++.-.|-..|+++... +-+..+|..|..+.. . +-++.+|...+..|+.-.. ....
T Consensus 250 ~~~V~~~ae~~LKr~~~~--------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~~~--- 318 (501)
T PF13001_consen 250 NSSVSDRAEDLLKRLSVS--------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATSFP--- 318 (501)
T ss_pred cchHHHHHHHHHhhcCCC--------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhCCc---
Confidence 344545555556555432 223446777777766 2 1237788777766665311 1111
Q ss_pred HHHhCCChHHHHHhhCCC--CHHHHHHHHHHH---HHhhCCCchh-----HHHHHhcCChHHHHHHh----hhhhhhHHH
Q 009568 155 VVIDHGAVPIFVKLLASP--SDDVREQAVWAL---GNVAGDSPRC-----RDLVLSQGALIPLLAQL----NERAKLSML 220 (532)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L---~nl~~~~~~~-----~~~~~~~~~l~~L~~ll----~~~~~~~~~ 220 (532)
.++......|.+. +..++..++..+ .....+.+.. +..+ ..++.+.+ ..- ....+...+
T Consensus 319 -----~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i-~~~g~p~~-~~~~~~~~~~~~~~lR 391 (501)
T PF13001_consen 319 -----NILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVI-LSQGWPLI-QDSSSQSNSSEDIELR 391 (501)
T ss_pred -----cHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHH-HhcCcccc-ccccccCCCcccHHHH
Confidence 2233333345454 667777777777 5554443321 1222 22333322 100 123467889
Q ss_pred HHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHH--HHHHhCchHH-HHHhhCC
Q 009568 221 RNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQ--AVIEAGVCPR-LVELLGH 297 (532)
Q Consensus 221 ~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~l~~-L~~lL~~ 297 (532)
..+..+|+.|++..|.. +...-.++..|..-|..++++++..+-.+|..++........ .......... +.....+
T Consensus 392 ~~aYe~lG~L~~~~p~l-~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~ 470 (501)
T PF13001_consen 392 SLAYETLGLLAKRAPSL-FSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQS 470 (501)
T ss_pred HHHHHHHHHHHccCccc-ccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccc
Confidence 99999999999986433 222356777777777888899988888888887643221111 0000011111 1112223
Q ss_pred CCccchhhHHHHHHHhhcCCc
Q 009568 298 PSPSVLIPALRTVGNIVTGDD 318 (532)
Q Consensus 298 ~~~~v~~~al~~L~nl~~~~~ 318 (532)
....+|..|++....+.-.++
T Consensus 471 ~~~~~R~~avk~an~~fpf~d 491 (501)
T PF13001_consen 471 EVRSCRYAAVKYANACFPFSD 491 (501)
T ss_pred hhHHHHHHHHHHHHHhCCccc
Confidence 445567777776666655444
No 315
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=77.71 E-value=49 Score=36.22 Aligned_cols=143 Identities=20% Similarity=0.210 Sum_probs=90.8
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009568 77 PAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVV 156 (532)
Q Consensus 77 ~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i 156 (532)
..+...+.++++......+.++..+..-+.-++.. ...-++.-..-.+..- ..+......+|..++.-+++....+
T Consensus 444 ~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~-~~~~~~~~~il~rls~~~~~~L~~l 519 (727)
T PF12726_consen 444 KALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSL-GQITDLISQILERLSDFDPSHLKEL 519 (727)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 44555666777776667777777766544222222 1112222222223222 4667778889999999888887777
Q ss_pred Hh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568 157 ID-HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (532)
Q Consensus 157 ~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~ 234 (532)
+. .++...++.++-+++.++.+.|...|..+.... .| ...+-.++ +..-........+.|..+....
T Consensus 520 ~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~--~R--------~e~i~~ll-~~~~~~tL~ai~~~l~~~~~~~ 587 (727)
T PF12726_consen 520 LSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD--GR--------LEAIQALL-QSNFSPTLSAINWSLRQLTKLK 587 (727)
T ss_pred HcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC--cH--------HHHHHHHH-HHhHHHHHHHHHHHHHHHHhhh
Confidence 76 588899999999999999999999999987422 22 22333334 2333445666677777776653
No 316
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=77.38 E-value=18 Score=29.71 Aligned_cols=73 Identities=14% Similarity=0.038 Sum_probs=57.7
Q ss_pred CHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCC--HHHHHHHHHHHHHHHHh
Q 009568 372 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD--PRIVTVCLEGLENILKV 444 (532)
Q Consensus 372 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d--~~v~~~al~~L~~l~~~ 444 (532)
.+..|-.-+.++++.++..|+..|-.+..++...+...+...+++..|..++..+. +.|+..++..+......
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 34567777888999999999999999999887777777778889999999888644 33788877777666543
No 317
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=76.84 E-value=32 Score=32.66 Aligned_cols=79 Identities=14% Similarity=0.292 Sum_probs=63.5
Q ss_pred cCCHHHHHHHHhcC--chhHHHHHHHHHHHhhcCCCH-HHHHHHHHcCChHHHHhhcCCC---CHHHHHHHHHHHHHHHH
Q 009568 370 AGLVGPLVNLLQNA--EFDIKKEAAWAISNATSGGTH-EQIKYLVREGCIKPLCDLFVCP---DPRIVTVCLEGLENILK 443 (532)
Q Consensus 370 ~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~-~~~~~l~~~~~l~~L~~lL~~~---d~~v~~~al~~L~~l~~ 443 (532)
.|++..++..+... +...|...+.|+-.+..++++ ....++.+.|+++.++..+-++ +..+.....+.|..+++
T Consensus 94 ~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK 173 (303)
T PF12463_consen 94 KGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIK 173 (303)
T ss_pred ccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHC
Confidence 56788888887654 667899999999999999887 5666788999999999876543 34688899999999998
Q ss_pred hhhhh
Q 009568 444 VGEAE 448 (532)
Q Consensus 444 ~~~~~ 448 (532)
.....
T Consensus 174 ~n~~~ 178 (303)
T PF12463_consen 174 FNRDA 178 (303)
T ss_pred CCHHH
Confidence 76543
No 318
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=76.55 E-value=22 Score=36.36 Aligned_cols=85 Identities=15% Similarity=0.199 Sum_probs=58.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHhcC-chhHHHHHHHHHHHhhcCC------------CHHHHHHHHHcCChHHHHhh-cCCC
Q 009568 361 RDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATSGG------------THEQIKYLVREGCIKPLCDL-FVCP 426 (532)
Q Consensus 361 ~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~------------~~~~~~~l~~~~~l~~L~~l-L~~~ 426 (532)
...++.+.+.++++.|+.+|... +..++..|+..|+.++... .......|.....+..|++. |...
T Consensus 52 ~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~ 131 (475)
T PF04499_consen 52 TGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQ 131 (475)
T ss_pred HHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCC
Confidence 34555566889999999999754 7789999999888876422 23455666767777777774 4323
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q 009568 427 DPRIVTVCLEGLENILKVG 445 (532)
Q Consensus 427 d~~v~~~al~~L~~l~~~~ 445 (532)
.......++.++..+++..
T Consensus 132 ~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 132 GGSSLVNGVSILIELIRKN 150 (475)
T ss_pred CcchHHHHHHHHHHHHHhc
Confidence 3555556677777777554
No 319
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=76.48 E-value=5.1 Score=37.57 Aligned_cols=155 Identities=15% Similarity=0.099 Sum_probs=87.2
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCC--cHHHHHHhhcCC---CCHHHHHHHHHHHHHHhcCChh
Q 009568 77 PAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSG--VVPRFVEFLMRE---DYPQLQFEAAWALTNIASGTSE 151 (532)
Q Consensus 77 ~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g--~i~~Lv~lL~~~---~~~~~~~~a~~~L~~l~~~~~~ 151 (532)
..+...+.+=.++.++.++..+|-++.. .+....+...+ +...+..++... ..+..+..++++++|+.. ++.
T Consensus 66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~-~~~ 142 (268)
T PF08324_consen 66 ILLLKILLSWPPESRFPALDLLRLAALH--PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFS-HPP 142 (268)
T ss_dssp HHHHHHHCCS-CCC-HHHHHHHHHHCCC--HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTT-SCC
T ss_pred HHHHHHHHhCCCccchhHHhHHHHHHhC--ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhC-CCc
Confidence 3344444443344567777888777663 22223332221 244444444332 347899999999999988 566
Q ss_pred hHHHHHhCC--ChHHHHHhhCCC----CHHHHHHHHHHHHHhhCCCchhH-HHHHhcCChHHHHHH-hhhhhhhHHHHHH
Q 009568 152 NTKVVIDHG--AVPIFVKLLASP----SDDVREQAVWALGNVAGDSPRCR-DLVLSQGALIPLLAQ-LNERAKLSMLRNA 223 (532)
Q Consensus 152 ~~~~i~~~g--~i~~L~~lL~~~----~~~v~~~a~~~L~nl~~~~~~~~-~~~~~~~~l~~L~~l-l~~~~~~~~~~~a 223 (532)
.+..+.+.. .+...+..+... +..++..++.++.|++......+ +.-.....+..+... .....+++....+
T Consensus 143 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~ 222 (268)
T PF08324_consen 143 GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRL 222 (268)
T ss_dssp CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHH
T ss_pred cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHH
Confidence 666666543 233333333333 78899999999999974211111 000011124444552 2234688888899
Q ss_pred HHHhhhccCCC
Q 009568 224 TWTLSNFCRGK 234 (532)
Q Consensus 224 ~~~L~~L~~~~ 234 (532)
+-++++|...+
T Consensus 223 LvAlGtL~~~~ 233 (268)
T PF08324_consen 223 LVALGTLLSSS 233 (268)
T ss_dssp HHHHHHHHCCS
T ss_pred HHHHHHHhccC
Confidence 99999999553
No 320
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=76.36 E-value=42 Score=27.78 Aligned_cols=70 Identities=19% Similarity=0.324 Sum_probs=53.5
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHh-cCCCHH---HHHHHH
Q 009568 415 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ-SHDNNE---IYEKAV 490 (532)
Q Consensus 415 ~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~-~~~~~~---v~~~a~ 490 (532)
++..|..-|.+.++.++..||..|..+++.+.. .|...+.....++.|..+. ...... |++++.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~------------~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l 110 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGP------------RFHREVASKEFLDELVKLIKSKKTDPETPVKEKIL 110 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHH------------HHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCH------------HHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHH
Confidence 567777888889999999999999999986533 2566666667778888864 344444 899999
Q ss_pred HHHHHh
Q 009568 491 KILETY 496 (532)
Q Consensus 491 ~il~~~ 496 (532)
.+|..+
T Consensus 111 ~ll~~W 116 (140)
T PF00790_consen 111 ELLQEW 116 (140)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988875
No 321
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=76.02 E-value=1.1e+02 Score=32.24 Aligned_cols=157 Identities=17% Similarity=0.137 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHH---hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHH
Q 009568 132 PQLQFEAAWALTNIASGTSENTKVVI---DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLL 208 (532)
Q Consensus 132 ~~~~~~a~~~L~~l~~~~~~~~~~i~---~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~ 208 (532)
++.++-|+.+|.-+....+-.-..+. .+.++..++..+. .++..+-.++++|.|+..+ +..+..+... ...++
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~ 633 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESIL 633 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHh
Confidence 68899999988888774433222221 2234555555554 4567778899999999877 5556655443 33333
Q ss_pred HHhh---hhhhhHHHHHHHHHhhhccCC--CCCCCcccccchHHHHHHhh----cC-CCHHHHHHHHHHHHHhccCChhH
Q 009568 209 AQLN---ERAKLSMLRNATWTLSNFCRG--KPQPPFDQVRPALPALAQLV----HS-NDEEVLTDACWALSYLSDGTNDK 278 (532)
Q Consensus 209 ~ll~---~~~~~~~~~~a~~~L~~L~~~--~~~~~~~~~~~~l~~L~~lL----~~-~d~~v~~~a~~~L~~l~~~~~~~ 278 (532)
..+. ...+..++........|++-- ....+ .+..+.+...+ .. +|-+.....+.+|++|+......
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~ 709 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASV 709 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHH
Confidence 3321 112223333322222222211 11111 23333333333 22 24455677788888888776544
Q ss_pred HHHHHHhCchHHHHHhhCC
Q 009568 279 IQAVIEAGVCPRLVELLGH 297 (532)
Q Consensus 279 ~~~~~~~~~l~~L~~lL~~ 297 (532)
.+ +.+.--+..++.-+.+
T Consensus 710 ~~-~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 710 IQ-LAKNRSVDSIAKKLKE 727 (745)
T ss_pred HH-HHHhcCHHHHHHHHHH
Confidence 33 3333345555555543
No 322
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=75.79 E-value=16 Score=29.05 Aligned_cols=71 Identities=15% Similarity=0.208 Sum_probs=51.0
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHH------hcCCCHHHHHH
Q 009568 415 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENL------QSHDNNEIYEK 488 (532)
Q Consensus 415 ~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L------~~~~~~~v~~~ 488 (532)
++..|..-|.+.++.++..+|..|..+++.+... |...+.....+..+..+ ....+..|+.+
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~------------f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k 105 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER------------FHQEVASNDFAVELLKFDKSKLLGDDVSTNVREK 105 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH------------HHHHHHHhHHHHHHHHhhccccccCCCChHHHHH
Confidence 5667777778889999999999999999876543 45555555444444321 23458899999
Q ss_pred HHHHHHHhC
Q 009568 489 AVKILETYW 497 (532)
Q Consensus 489 a~~il~~~~ 497 (532)
+..+++.+.
T Consensus 106 ~~~l~~~w~ 114 (115)
T cd00197 106 AIELVQLWA 114 (115)
T ss_pred HHHHHHHHh
Confidence 999998764
No 323
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=75.53 E-value=83 Score=30.64 Aligned_cols=195 Identities=9% Similarity=0.024 Sum_probs=95.7
Q ss_pred CChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC-ChhHHH
Q 009568 202 GALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG-TNDKIQ 280 (532)
Q Consensus 202 ~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~-~~~~~~ 280 (532)
.++..+..++.+..++..+...+.++..=+..- .......++..+.+-+.+..+.++..-+.+++.+... ......
T Consensus 22 ~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~ 98 (339)
T PF12074_consen 22 KIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL 98 (339)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence 356777777767777776666665554322211 2223356778888888888777888777777776541 011111
Q ss_pred HHHHhCchHHHHHhhC----CCCccch---hhHHHHHHHhhcCCcchhHH-------Hh-hc--Cc--hHHHHHHhcCCC
Q 009568 281 AVIEAGVCPRLVELLG----HPSPSVL---IPALRTVGNIVTGDDFQTQC-------II-TY--GA--LPYLLGLLTHSH 341 (532)
Q Consensus 281 ~~~~~~~l~~L~~lL~----~~~~~v~---~~al~~L~nl~~~~~~~~~~-------~~-~~--~~--l~~L~~lL~~~~ 341 (532)
.+. ..+++.|...+. ++-.... ..+..++..+.......... +. +. .+ -+.+..-+ .
T Consensus 99 ~~~-~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl--~- 174 (339)
T PF12074_consen 99 KFA-EPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL--A- 174 (339)
T ss_pred HHH-HHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--C-
Confidence 122 246677777663 3322211 11222221111111111000 00 00 00 01111111 2
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--chhHHHHHHHHHHHhhcCCC
Q 009568 342 KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAWAISNATSGGT 403 (532)
Q Consensus 342 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~ 403 (532)
+++.....+.++..+..+.......-....+-..++.++-+. .+++|+.|..++..+.....
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~ 238 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNP 238 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCh
Confidence 233333444444444433222111111112445677777777 88999999999999887643
No 324
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=75.33 E-value=59 Score=31.94 Aligned_cols=136 Identities=16% Similarity=0.060 Sum_probs=81.9
Q ss_pred hHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc----------CCCHHHHHHHHHHHHHhcc
Q 009568 204 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH----------SNDEEVLTDACWALSYLSD 273 (532)
Q Consensus 204 l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~----------~~d~~v~~~a~~~L~~l~~ 273 (532)
-..++..|.+......+..++.++..|+++...-........+..|+.+-. ..|..+...++.||+|+..
T Consensus 47 ~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf 126 (532)
T KOG4464|consen 47 GERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVF 126 (532)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHh
Confidence 344566664444455666777788888887644444444555555555432 2356789999999999998
Q ss_pred CChhHHHHHHHhCchHHHHHhhCC----C-CccchhhHHHHHHHhhcCC-cchhHHHhhcCchHHHHHHhcC
Q 009568 274 GTNDKIQAVIEAGVCPRLVELLGH----P-SPSVLIPALRTVGNIVTGD-DFQTQCIITYGALPYLLGLLTH 339 (532)
Q Consensus 274 ~~~~~~~~~~~~~~l~~L~~lL~~----~-~~~v~~~al~~L~nl~~~~-~~~~~~~~~~~~l~~L~~lL~~ 339 (532)
.+...............+.+.+.. . -..+...=++.|--+..-. +...+.+.+.++++.+.+++.+
T Consensus 127 ~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 127 HSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLED 198 (532)
T ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhc
Confidence 888777777777766666666532 1 1122222233333332222 3344556677788888888754
No 325
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=75.11 E-value=46 Score=35.80 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=59.2
Q ss_pred CccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH
Q 009568 299 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 378 (532)
Q Consensus 299 ~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ 378 (532)
.+..|..++..|+.++...+.....+.+..+++.|+++|....+..+...|+.+|..+.=.-+......+. .++..+.+
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~-~Lf~If~R 159 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLP-DLFNIFGR 159 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHH-HHHHHHHH
Confidence 45688999999999999888888889999999999999987757778888888888776443332222221 14444445
Q ss_pred HH
Q 009568 379 LL 380 (532)
Q Consensus 379 ll 380 (532)
++
T Consensus 160 l~ 161 (668)
T PF04388_consen 160 LL 161 (668)
T ss_pred HH
Confidence 54
No 326
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=74.26 E-value=30 Score=28.62 Aligned_cols=74 Identities=11% Similarity=0.031 Sum_probs=55.9
Q ss_pred CHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCC-CHH---HHHHHHHHHHHHHHhh
Q 009568 372 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP-DPR---IVTVCLEGLENILKVG 445 (532)
Q Consensus 372 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~-d~~---v~~~al~~L~~l~~~~ 445 (532)
++..|..-|.++++.++..|+..|-.+..++.+.+...+.....+..|..++... ... |+..++..|...-...
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 3456777788899999999999999999887777777766677888888877743 333 7888777776665443
No 327
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.94 E-value=85 Score=34.96 Aligned_cols=256 Identities=14% Similarity=0.150 Sum_probs=145.1
Q ss_pred HHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--
Q 009568 94 ATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-- 171 (532)
Q Consensus 94 a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-- 171 (532)
+..+|..++... ..+.+.+.+..++..++.++-+ .+-|...++++..+....+.+.. ..-+-.++..|++
T Consensus 662 gwDcLisllKnn-teNqklFreanGvklilpflin---dehRSslLrivscLitvdpkqvh----hqelmalVdtLksgm 733 (2799)
T KOG1788|consen 662 GWDCLISLLKNN-TENQKLFREANGVKLILPFLIN---DEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGM 733 (2799)
T ss_pred hHHHHHHHHhcc-chhhHHHHhhcCceEEEEeeec---hHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcc
Confidence 355677777653 4556667777888877777743 35566666666666554444211 1112334444443
Q ss_pred ------C----CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh---------hhhh----HHHHHHHHHhh
Q 009568 172 ------P----SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE---------RAKL----SMLRNATWTLS 228 (532)
Q Consensus 172 ------~----~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~---------~~~~----~~~~~a~~~L~ 228 (532)
. ...+....+.+++.+.+.+-..+..+-+.+++..|+..|.. ..|. ++.......+.
T Consensus 734 vt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfT 813 (2799)
T KOG1788|consen 734 VTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFT 813 (2799)
T ss_pred eeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHH
Confidence 1 23455666778888887777777888888888888777621 1121 11221111111
Q ss_pred -hccCCCCCCCccc---ccc-------------------hHHHHH----HhhcCCCHHHHHHHHHHHHHhccC-------
Q 009568 229 -NFCRGKPQPPFDQ---VRP-------------------ALPALA----QLVHSNDEEVLTDACWALSYLSDG------- 274 (532)
Q Consensus 229 -~L~~~~~~~~~~~---~~~-------------------~l~~L~----~lL~~~d~~v~~~a~~~L~~l~~~------- 274 (532)
.+|.+..+..... ... .+..+. +.+-.++-.--..||..+..+-++
T Consensus 814 lavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntP 893 (2799)
T KOG1788|consen 814 LAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTP 893 (2799)
T ss_pred HHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccC
Confidence 1222221111110 011 111111 111122222233445544443221
Q ss_pred ---ChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhc---CCCchhHHHH
Q 009568 275 ---TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT---HSHKKSIKKE 348 (532)
Q Consensus 275 ---~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~---~~~~~~v~~~ 348 (532)
.....+.+..+|++..++..+-...+..+..-++.+..++..++......-..|+++.++.++. +. +......
T Consensus 894 sGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsg-sspfLsh 972 (2799)
T KOG1788|consen 894 SGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSG-SSPFLSH 972 (2799)
T ss_pred CCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcC-CchHhhc
Confidence 1122356788899999999988888899999999999999988877766666788888877763 33 3446666
Q ss_pred HHHHHHHHhc
Q 009568 349 ACWTISNITA 358 (532)
Q Consensus 349 a~~~L~nl~~ 358 (532)
+..++.-++.
T Consensus 973 alkIvemLga 982 (2799)
T KOG1788|consen 973 ALKIVEMLGA 982 (2799)
T ss_pred cHHHHHHHhh
Confidence 6666666665
No 328
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=72.81 E-value=41 Score=34.34 Aligned_cols=105 Identities=15% Similarity=0.194 Sum_probs=68.9
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCC-------CCHHHHHHHHHHHHHHhc
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-------DYPQLQFEAAWALTNIAS 147 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~-------~~~~~~~~a~~~L~~l~~ 147 (532)
-+..+.+.+-++++..+..|+..|+. ++-++. ++|.|+.++... ++-.+.....+.+..+..
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~T------DsGL~~-----LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~ 276 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLET------DSGLQQ-----LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD 276 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcc------CccHHH-----HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc
Confidence 35667777778888888888888743 333433 678888888643 235666666677777766
Q ss_pred CChhhHHHHHhCCChHHHHHhhCC----------CCHHHHHHHHHHHHHhhCCC
Q 009568 148 GTSENTKVVIDHGAVPIFVKLLAS----------PSDDVREQAVWALGNVAGDS 191 (532)
Q Consensus 148 ~~~~~~~~i~~~g~i~~L~~lL~~----------~~~~v~~~a~~~L~nl~~~~ 191 (532)
++...-.-.=..++|.++.++-+ .+..+|..|+..+..+|.+-
T Consensus 277 -Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f 329 (576)
T KOG2549|consen 277 -NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNF 329 (576)
T ss_pred -CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhh
Confidence 55443333334567888776633 34678888888888887543
No 329
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=71.96 E-value=1e+02 Score=30.15 Aligned_cols=250 Identities=13% Similarity=0.120 Sum_probs=124.9
Q ss_pred CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHh
Q 009568 173 SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQL 252 (532)
Q Consensus 173 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~l 252 (532)
...-++.|...+.+...+-|...+. ++.+-+.++ .+.+..+++.|+.-|-.+|.++ ....+.+.|+++
T Consensus 37 ~~k~k~lasq~ip~~fk~fp~la~~-----a~da~~d~~-ed~d~~ir~qaik~lp~fc~~d------~~~rv~d~l~qL 104 (460)
T KOG2213|consen 37 TSKEKRLASQFIPRFFKHFPSLADE-----AIDAQLDLC-EDDDVGIRRQAIKGLPLFCKGD------ALSRVNDVLVQL 104 (460)
T ss_pred chHHHHHHHHHHHHHHhhCchhhhH-----HHHhhhccc-cccchhhHHHHHhccchhccCc------hhhhhHHHHHHH
Confidence 3455666777788776666654333 456666777 7778888999998888888873 223334444444
Q ss_pred hc------------CCCHHHHHHHHHHHHH-hccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCc-
Q 009568 253 VH------------SNDEEVLTDACWALSY-LSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD- 318 (532)
Q Consensus 253 L~------------~~d~~v~~~a~~~L~~-l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~- 318 (532)
|+ ..|..+++.++..|.. +..-.++....-++..++..+...|.+-...-....+..|+++.....
T Consensus 105 Lnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k 184 (460)
T KOG2213|consen 105 LNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTK 184 (460)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCC
Confidence 43 2466677777666543 222233333333444555555555555443344445566666654431
Q ss_pred chhHHHhhc-CchHHHHHH--hcCCCchhHHHHHHHHHH----HHhcCCHHH-HHHHHHcCCHHHHHHHHhcCchhHHHH
Q 009568 319 FQTQCIITY-GALPYLLGL--LTHSHKKSIKKEACWTIS----NITAGNRDQ-IQAVIDAGLVGPLVNLLQNAEFDIKKE 390 (532)
Q Consensus 319 ~~~~~~~~~-~~l~~L~~l--L~~~~~~~v~~~a~~~L~----nl~~~~~~~-~~~l~~~~~i~~L~~ll~~~~~~v~~~ 390 (532)
.....+.+. ....-+..+ +.-+ ++.+...-..|+. -++.+-+.. .-..+...++|. -......+.+..
T Consensus 185 ~~~a~lqeLa~~~e~~a~ldaf~~s-D~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~---~fdkl~e~rkL~ 260 (460)
T KOG2213|consen 185 AGEARLQELAEEQEGLADLDAFNVS-DADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPH---HFDKLTEERKLD 260 (460)
T ss_pred CCHHHHHHHHHHHhhhhccCcccCC-ChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhccc---ccccchHHHHHH
Confidence 111111110 001111111 2233 4444333333332 233332221 112223334443 111113577888
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC----CC--HHHHHHHHHHHHHHHH
Q 009568 391 AAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC----PD--PRIVTVCLEGLENILK 443 (532)
Q Consensus 391 a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~----~d--~~v~~~al~~L~~l~~ 443 (532)
.+.+|..++...+.+.... .++.++++|.. .+ ++....-++|+.+++.
T Consensus 261 lLK~lAEMss~ttaq~a~q-----~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h 314 (460)
T KOG2213|consen 261 LLKALAEMSSYTTAQAARQ-----MLPSIVELLKEYMPAPKTGEEMQFSYVECLLYALH 314 (460)
T ss_pred HHHHHHHhCccchHHHHHH-----HHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHH
Confidence 8999999988765544444 45555555542 22 3444444454444443
No 330
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=71.84 E-value=54 Score=32.21 Aligned_cols=103 Identities=19% Similarity=0.156 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHHhc--CChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHH
Q 009568 131 YPQLQFEAAWALTNIAS--GTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLL 208 (532)
Q Consensus 131 ~~~~~~~a~~~L~~l~~--~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~ 208 (532)
||.+|..=-..|.-+.+ -++...+..++..++-.|+.+++++++.-|+..-.+|.++-+.-...|..+ ..++-..+.
T Consensus 146 wphLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~fi-rk~iNNif~ 224 (457)
T KOG2085|consen 146 WPHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFI-RKSINNIFL 224 (457)
T ss_pred chHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHH-HHhhcchhh
Confidence 45555443333333333 235566677788899999999999999999999999999876444444333 223333444
Q ss_pred HHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568 209 AQLNERAKLSMLRNATWTLSNFCRGK 234 (532)
Q Consensus 209 ~ll~~~~~~~~~~~a~~~L~~L~~~~ 234 (532)
+.+.....-.=....+..|+.+..+.
T Consensus 225 ~FIyEte~hnGIaELLEIlgSiIngf 250 (457)
T KOG2085|consen 225 RFIYETERHNGIAELLEILGSIINGF 250 (457)
T ss_pred hhcccccccCCHHHHHHHHHHhcCcc
Confidence 44422222222333444444444443
No 331
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=70.95 E-value=58 Score=31.42 Aligned_cols=185 Identities=11% Similarity=0.121 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHh-hCC---CCccchhh-HHHHHHHhh----cCCcchhHHHhhcCch
Q 009568 260 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LGH---PSPSVLIP-ALRTVGNIV----TGDDFQTQCIITYGAL 330 (532)
Q Consensus 260 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~---~~~~v~~~-al~~L~nl~----~~~~~~~~~~~~~~~l 330 (532)
++...+..+.......++. .. +...+++.++.. |.+ ..+..|.+ ++.+++.++ .........+++ .++
T Consensus 43 iKkeIL~Li~t~i~~~~~~-~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~vf 119 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDP-EE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-H-HH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHhccCCH-HH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HHH
Confidence 4455555555554443322 22 334667776663 322 23333322 333343333 322333444444 455
Q ss_pred HHHHHHhcCCC--chhHHHHHHHHHHHHhcCCHHHHHHHHH---cCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCC---
Q 009568 331 PYLLGLLTHSH--KKSIKKEACWTISNITAGNRDQIQAVID---AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG--- 402 (532)
Q Consensus 331 ~~L~~lL~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~--- 402 (532)
...+.++.... -|+.|..-...|.++...+....-.+-. ..++..++..+++.+.++...++.++..+....
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~ 199 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKT 199 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 66667775432 4788888888888777543322211100 124566777788889999999999998887533
Q ss_pred CHHHHHHHHHcCChHHHHhh---cCCC-CHHHHHHHHHHHHHHHHhhhh
Q 009568 403 THEQIKYLVREGCIKPLCDL---FVCP-DPRIVTVCLEGLENILKVGEA 447 (532)
Q Consensus 403 ~~~~~~~l~~~~~l~~L~~l---L~~~-d~~v~~~al~~L~~l~~~~~~ 447 (532)
+++....+.+.-.++.|.++ +.++ +...-......|..++...+.
T Consensus 200 ~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve~ 248 (319)
T PF08767_consen 200 NPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVES 248 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHc
Confidence 34555556655444444433 3333 333444445677777765443
No 332
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.58 E-value=66 Score=35.76 Aligned_cols=279 Identities=17% Similarity=0.125 Sum_probs=146.0
Q ss_pred hcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc---CChhhHHHHHhC
Q 009568 83 VWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS---GTSENTKVVIDH 159 (532)
Q Consensus 83 L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~i~~~ 159 (532)
|++.+.+.+...+..+.++.+.. ..+-...-+.--+|.|+.-+..-. ..+|...+.+|-.-.. .-|+.
T Consensus 476 LkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvncvPeq------- 546 (2799)
T KOG1788|consen 476 LKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVNCVPEQ------- 546 (2799)
T ss_pred HHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhccCcHH-------
Confidence 45677778888888888887642 233333335567888887777655 5677666655533221 01111
Q ss_pred CChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhh---hhHHHHHHHHHhhhccCCC-
Q 009568 160 GAVPIFVKLLASP-SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA---KLSMLRNATWTLSNFCRGK- 234 (532)
Q Consensus 160 g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~---~~~~~~~a~~~L~~L~~~~- 234 (532)
-+-.|+-+|+.+ ...+....+.....+...+..+++.+.+-|.+..|...+.++. .++-. .-++.....+
T Consensus 547 -ELlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqy----sgvsehydrnp 621 (2799)
T KOG1788|consen 547 -ELLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQY----SGVSEHYDRNP 621 (2799)
T ss_pred -HHHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchh----hhHHHHhhcCC
Confidence 123456667664 2445555555556666667778888999999988888775421 00000 0011111111
Q ss_pred CCCCccc---ccchHHHHHHhhcCC---CHH--H---HHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccch
Q 009568 235 PQPPFDQ---VRPALPALAQLVHSN---DEE--V---LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVL 303 (532)
Q Consensus 235 ~~~~~~~---~~~~l~~L~~lL~~~---d~~--v---~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~ 303 (532)
..+.+.. ....+-.--++.++. ++- + ..-.-.+|..+..++.++...+.++..+..+++++- +...|
T Consensus 622 ss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfli--ndehR 699 (2799)
T KOG1788|consen 622 SSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLI--NDEHR 699 (2799)
T ss_pred CCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeee--chHHH
Confidence 1111100 001110111122221 110 0 111123555666666666677777777777777773 44567
Q ss_pred hhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCC-----------chhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 009568 304 IPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH-----------KKSIKKEACWTISNITAGNRDQIQAVIDAGL 372 (532)
Q Consensus 304 ~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-----------~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 372 (532)
...++++..+....+.+. ++.-+-.++..|++.. ..........++..+..-+......+-+++.
T Consensus 700 SslLrivscLitvdpkqv----hhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatG 775 (2799)
T KOG1788|consen 700 SSLLRIVSCLITVDPKQV----HHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATG 775 (2799)
T ss_pred HHHHHHHHHHhccCcccc----cHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhcccc
Confidence 788899988887766532 1223445666665521 1123444555566665433333334456666
Q ss_pred HHHHHHHHh
Q 009568 373 VGPLVNLLQ 381 (532)
Q Consensus 373 i~~L~~ll~ 381 (532)
+..|...|.
T Consensus 776 FslLlttLh 784 (2799)
T KOG1788|consen 776 FSLLLTTLH 784 (2799)
T ss_pred HHHHHHHHH
Confidence 666666553
No 333
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=70.42 E-value=95 Score=29.06 Aligned_cols=62 Identities=19% Similarity=0.090 Sum_probs=40.7
Q ss_pred chhHHHHHHHHHHHhhcCC---------------CHHHHHHHHHcCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhh
Q 009568 384 EFDIKKEAAWAISNATSGG---------------THEQIKYLVREGCIKPLCDLFVCP-DPRIVTVCLEGLENILKVG 445 (532)
Q Consensus 384 ~~~v~~~a~~aL~nl~~~~---------------~~~~~~~l~~~~~l~~L~~lL~~~-d~~v~~~al~~L~~l~~~~ 445 (532)
+..+.+.++..+.|+..-. ....+..|.++|+++.|+.+..+. ..+....+++++..+++..
T Consensus 133 d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~ 210 (266)
T PF04821_consen 133 DNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQ 210 (266)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCC
Confidence 3445566666777766431 123344556789999999988876 3445557888888888754
No 334
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=69.14 E-value=49 Score=32.30 Aligned_cols=112 Identities=15% Similarity=0.120 Sum_probs=66.0
Q ss_pred cchHHHHHHhhcCC-------CHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhC----------CCCccchhh
Q 009568 243 RPALPALAQLVHSN-------DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG----------HPSPSVLIP 305 (532)
Q Consensus 243 ~~~l~~L~~lL~~~-------d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~----------~~~~~v~~~ 305 (532)
..++|.++.++... +.......+..+..|..+..-.....+. .++|.++.++- .+.+.+|..
T Consensus 209 ~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh-~Lip~vltclv~~~l~~~~~~~~h~~LRd~ 287 (343)
T cd08050 209 QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLH-QLIPSVLTCLVAKQLCSRPPDDNHWALRDY 287 (343)
T ss_pred hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHH-HHHHHHHHHhhhHhhcCCCCCchHHHHHHH
Confidence 45666666666421 4566677777777777665544443333 47777777662 234688999
Q ss_pred HHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCch-hHHHHHHHHHHHH
Q 009568 306 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK-SIKKEACWTISNI 356 (532)
Q Consensus 306 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl 356 (532)
|..+|+.++........ -+...+...+.+.|.++..+ .....|...|+.+
T Consensus 288 AA~ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 288 AARLLAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99999999965442211 12334444566666554233 2355666666555
No 335
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=69.04 E-value=1.5e+02 Score=31.89 Aligned_cols=144 Identities=8% Similarity=0.090 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHH-HcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHH-------cC-
Q 009568 344 SIKKEACWTISNITAGNRDQIQAVI-DAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVR-------EG- 414 (532)
Q Consensus 344 ~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-------~~- 414 (532)
....++..||..+....-. +..++ ...-+-.|...++...+.+...++..++.+|..+.....+.++. ..
T Consensus 207 k~~~eiIrClka~mNn~~G-l~~vL~~e~~lllla~aldpr~pnmm~dvvkllsalciV~ee~~~ekvl~aiT~~ae~~~ 285 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAFMNNKFG-LVLVLRRERSLLLLARALDPREPNMMTDVVKLLSALCIVGEENGLEKVLEAITTIAEAKP 285 (1102)
T ss_pred HHHHHHHHHHHHHhccccc-eeeeecCCccHHHHHHhcCccCccHHHHHHHHHHHHheeehhhHHHHHHHHHHHHHhhcc
Confidence 4556777777766543221 22222 22235566677777778888888888888887654333333221 11
Q ss_pred --ChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHH
Q 009568 415 --CIKPLCDLFVCP-DPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVK 491 (532)
Q Consensus 415 --~l~~L~~lL~~~-d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~ 491 (532)
-...+++.|... +..+...|...|..+........ .--.....+.+.|.-+.|.++....|.. ...+.+
T Consensus 286 veRF~piv~gl~~~e~~~l~vacmq~INal~t~p~dld-------fRlhlR~E~mr~gL~~~l~~l~~i~n~~-ldvqlk 357 (1102)
T KOG1924|consen 286 VERFRPIVEGLDFLEKQQLQVACMQFINALVTSPSDLD-------FRLHLRSEFMRDGLHKYLPDLTEINNDI-LDVQLK 357 (1102)
T ss_pred hhhhhhHHHHHhccchHHHHHHHHHHHHHhcCCHHHhh-------HHHHHHHHHHHHhHHHHHHHhhhhccHH-HHHHHH
Confidence 145677777765 45555555565555544433332 1122455677799999999997775443 444555
Q ss_pred HHHHh
Q 009568 492 ILETY 496 (532)
Q Consensus 492 il~~~ 496 (532)
++++.
T Consensus 358 vfdE~ 362 (1102)
T KOG1924|consen 358 VFDEH 362 (1102)
T ss_pred HHhhh
Confidence 55444
No 336
>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []. Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.
Probab=68.63 E-value=3.6 Score=25.45 Aligned_cols=38 Identities=32% Similarity=0.372 Sum_probs=22.0
Q ss_pred HHhhhcCCCCCchHHhhhhhHHHHHHHHHhhHHHHHhhh
Q 009568 11 VRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKR 49 (532)
Q Consensus 11 ~~~~~~k~~~~~~~~~~~r~~~~~~~Rk~~r~~~~~~~r 49 (532)
+|...||+..+..+.-+|| +...+.-|++|-+.+..-|
T Consensus 2 PR~sqYK~~~~~~~Q~eRR-~~~Le~QK~kR~d~~~~aR 39 (40)
T PF11538_consen 2 PRLSQYKNKGSALDQEERR-REFLERQKNKRLDYVNHAR 39 (40)
T ss_dssp TTCSCTT-TTTSCSHHHHH-HHHHHHHHSHHSHHHHHHH
T ss_pred ccHHHhhcccchHhHHHHH-HHHHHHHHHHhHHHHHhcc
Confidence 4778899854444444434 4455666777766665544
No 337
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=68.60 E-value=14 Score=24.54 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=30.5
Q ss_pred HHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHHHHh
Q 009568 462 AQLVEEAEGLEKIENLQSH-DNNEIYEKAVKILETY 496 (532)
Q Consensus 462 ~~~~~~~g~~~~l~~L~~~-~~~~v~~~a~~il~~~ 496 (532)
...+.+.|.-..+..|..| ++++|...|..++.++
T Consensus 13 ~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~W 48 (53)
T PF08711_consen 13 VELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKKW 48 (53)
T ss_dssp HHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 5678889999999999998 9999999999999875
No 338
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=68.37 E-value=1.6e+02 Score=31.01 Aligned_cols=162 Identities=10% Similarity=0.073 Sum_probs=76.6
Q ss_pred CCCHHHHHHHHHHHHHhccCChhHHHH---HHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhc--Cc
Q 009568 255 SNDEEVLTDACWALSYLSDGTNDKIQA---VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITY--GA 329 (532)
Q Consensus 255 ~~d~~v~~~a~~~L~~l~~~~~~~~~~---~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~--~~ 329 (532)
.-..+.+..|+-+|..+.......... .....++..++..+. .++..+..++++|.|+..+ +...+.+... .+
T Consensus 555 ~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~~~~i 632 (745)
T KOG0301|consen 555 QWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSRLESI 632 (745)
T ss_pred cCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHHHHHH
Confidence 344556666666666665443322111 112235555555555 5567788899999999986 4343333221 11
Q ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc-----CchhHHHHHHHHHHHhhcCCCH
Q 009568 330 LPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN-----AEFDIKKEAAWAISNATSGGTH 404 (532)
Q Consensus 330 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-----~~~~v~~~a~~aL~nl~~~~~~ 404 (532)
+..+...-..+ +..++...+....|++.. .++.--+.+..+.|...+.. .+.+..-.++.||++++...
T Consensus 633 ~~~~~~~~s~~-~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~-- 706 (745)
T KOG0301|consen 633 LDPVIEASSLS-NKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD-- 706 (745)
T ss_pred hhhhhhhhccc-chhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc--
Confidence 12222222222 345555444444454421 01111112344444444432 13344556677888887753
Q ss_pred HHHHHHHHcCChHHHHhhcC
Q 009568 405 EQIKYLVREGCIKPLCDLFV 424 (532)
Q Consensus 405 ~~~~~l~~~~~l~~L~~lL~ 424 (532)
.....+...--+..+..-++
T Consensus 707 ~~~~~~A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 707 ASVIQLAKNRSVDSIAKKLK 726 (745)
T ss_pred HHHHHHHHhcCHHHHHHHHH
Confidence 23333344333444444443
No 339
>PLN03205 ATR interacting protein; Provisional
Probab=67.27 E-value=1.2e+02 Score=29.71 Aligned_cols=160 Identities=14% Similarity=0.201 Sum_probs=87.7
Q ss_pred cchHHHHHHhhcCCCHHHHHHHHHHHHHhcc---CChhHHHHHHHhCchH---HHHHh-hCCCCccchhhHHHHHHHhhc
Q 009568 243 RPALPALAQLVHSNDEEVLTDACWALSYLSD---GTNDKIQAVIEAGVCP---RLVEL-LGHPSPSVLIPALRTVGNIVT 315 (532)
Q Consensus 243 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~---~L~~l-L~~~~~~v~~~al~~L~nl~~ 315 (532)
..++..|+.+-.-++.-+...+++.|..+.. ++..+...-.+.+.+. .+.+. ..+....++..|+.++.-|..
T Consensus 322 qtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlm 401 (652)
T PLN03205 322 KSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVM 401 (652)
T ss_pred HHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhh
Confidence 3445555555555555565666655544331 1222222222322222 22222 134567789999999888877
Q ss_pred CCcch--hHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHH----------hcCCHHH-H-------------HHHHH
Q 009568 316 GDDFQ--TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI----------TAGNRDQ-I-------------QAVID 369 (532)
Q Consensus 316 ~~~~~--~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl----------~~~~~~~-~-------------~~l~~ 369 (532)
.++.. ++.+....+++.+..+|+...-..|+++|...|--+ +.++.+. + ..-+
T Consensus 402 ssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~f- 480 (652)
T PLN03205 402 STDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAF- 480 (652)
T ss_pred ccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHhcCCccccccccccccccccccHHHH-
Confidence 66643 334444567788888897664567888887654322 2221100 0 0000
Q ss_pred cCCHHHHHHHHhc-----CchhHHHHHHHHHHHhhcCCC
Q 009568 370 AGLVGPLVNLLQN-----AEFDIKKEAAWAISNATSGGT 403 (532)
Q Consensus 370 ~~~i~~L~~ll~~-----~~~~v~~~a~~aL~nl~~~~~ 403 (532)
..++.-|.+.+.. .+.++++.+...|.-+++.|.
T Consensus 481 SsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk 519 (652)
T PLN03205 481 GKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGN 519 (652)
T ss_pred HHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCC
Confidence 0134455555543 266888999999998888764
No 340
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=67.19 E-value=1.9e+02 Score=31.22 Aligned_cols=148 Identities=14% Similarity=0.141 Sum_probs=89.8
Q ss_pred hccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhH--hhh-----------------------------CCcHHH
Q 009568 73 LESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEE--VIQ-----------------------------SGVVPR 121 (532)
Q Consensus 73 ~~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~--~i~-----------------------------~g~i~~ 121 (532)
+..+..|+....+......++|+.+|..++-..--|.++. +-+ ..+|..
T Consensus 229 lk~lEtLls~c~KKsk~~a~~~l~~LkdlfI~~LLPdRKLk~f~qrp~~~l~~~~~~~k~Ll~WyfE~~LK~ly~rfiev 308 (988)
T KOG2038|consen 229 LKSLETLLSSCKKKSKRDALQALPALKDLFINGLLPDRKLKYFSQRPLLELTNKRLRDKILLMWYFEHELKILYFRFIEV 308 (988)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCcchhhHHHhhChhhhccccccccceehHHHHHHHHHHHHHHHHHH
Confidence 4566777777776655556667777766654321111110 000 123344
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc
Q 009568 122 FVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ 201 (532)
Q Consensus 122 Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~ 201 (532)
|..+-.++- ++++..|+..+..+....|++-..+ +..|+.-|-++...+...|...|.+|....|..+..+
T Consensus 309 Le~lS~D~L-~~vk~raL~ti~~lL~~kPEqE~~L-----L~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv--- 379 (988)
T KOG2038|consen 309 LEELSKDPL-EEVKKRALKTIYDLLTNKPEQENNL-----LVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV--- 379 (988)
T ss_pred HHHHccccH-HHHHHHHHHHHHHHHhCCcHHHHHH-----HHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh---
Confidence 444444444 7899999999999988788875544 4677888888888999999999999988878765543
Q ss_pred CChHHHHHHhh-hhhhhHHHHHHHHHhhhcc
Q 009568 202 GALIPLLAQLN-ERAKLSMLRNATWTLSNFC 231 (532)
Q Consensus 202 ~~l~~L~~ll~-~~~~~~~~~~a~~~L~~L~ 231 (532)
+..+.+++- .+.+.....+++-+|..+.
T Consensus 380 --i~EIer~~FRpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 380 --IDEIERLAFRPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred --HHHHHHHHcccCccccceeehhhhhhhhH
Confidence 333444432 2223334444444444443
No 341
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=66.95 E-value=36 Score=28.13 Aligned_cols=49 Identities=20% Similarity=0.231 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHH
Q 009568 258 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310 (532)
Q Consensus 258 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L 310 (532)
.++...++.++.......+ ...+...++++.+..+|.+ +..+..|+.||
T Consensus 100 ~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCC--HHHHHHHHHhC
Confidence 6788888888888776443 3556677889999998844 44577777765
No 342
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=66.80 E-value=47 Score=37.57 Aligned_cols=177 Identities=13% Similarity=0.090 Sum_probs=97.7
Q ss_pred hHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhC
Q 009568 217 LSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG 296 (532)
Q Consensus 217 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 296 (532)
..++..++|+|..+..+- ........+.++..++..+..+++.-.+..+.+......+... ..-..+++..+..|.
T Consensus 143 apVre~caq~L~~~l~~~---~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~-~~~~~vl~~~i~~L~ 218 (1549)
T KOG0392|consen 143 APVREACAQALGAYLKHM---DESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLF-QLLNLVLDFVIEGLE 218 (1549)
T ss_pred hhhHHHHHHHHHHHHHhh---hhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhh
Confidence 357788888888877653 1223355667777777777777776666666554431111111 111245667777788
Q ss_pred CCCccchhhHHHHHHHhhcCCcch-hHHHhhcCchHHHHHHhcCCCchh--HHHHHHHHHHHHhcCCHHHHHHHH-----
Q 009568 297 HPSPSVLIPALRTVGNIVTGDDFQ-TQCIITYGALPYLLGLLTHSHKKS--IKKEACWTISNITAGNRDQIQAVI----- 368 (532)
Q Consensus 297 ~~~~~v~~~al~~L~nl~~~~~~~-~~~~~~~~~l~~L~~lL~~~~~~~--v~~~a~~~L~nl~~~~~~~~~~l~----- 368 (532)
+.+..++..|...+..++...... .+.+. .++..+...+..- +.- -.......+..++... ....+.
T Consensus 219 ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~--~lv~~l~~~l~~l-ddl~~s~~si~~ll~~l~~~~--evl~l~~~~n~ 293 (1549)
T KOG0392|consen 219 DSDDDVRSVAAQFLVPAPSIQVKLMVQKIA--KLVHTLWSFLLEL-DDLSSSTASIMHLLDELCIEN--EVLDLFEQQNL 293 (1549)
T ss_pred hcchHHHHHHHHHhhhhhHHHHhhhHhHHH--HHHHHHHHHHHHh-hhcchhhHHHHHHHHHHhhhH--HHHHHHHHhhh
Confidence 888888888888877766533111 11110 1222233332221 110 0111112223333322 122221
Q ss_pred HcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009568 369 DAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG 402 (532)
Q Consensus 369 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 402 (532)
+.|++|.+..++.+.-..++..++..+..+.+..
T Consensus 294 ~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 294 EVGLVPRLWPFLRHTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2578899999998887788888888888887643
No 343
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=66.43 E-value=27 Score=25.30 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=30.4
Q ss_pred HHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009568 462 AQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETY 496 (532)
Q Consensus 462 ~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~ 496 (532)
...+.....-..+..|..|+|++|...|..++..+
T Consensus 35 ~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~W 69 (75)
T smart00509 35 VDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSW 69 (75)
T ss_pred HHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56677777788899999999999999999999875
No 344
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=66.33 E-value=2.1e+02 Score=31.55 Aligned_cols=181 Identities=18% Similarity=0.151 Sum_probs=84.3
Q ss_pred HHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC-----CCC--CcccccchHHHHHHhhcCC--CHHHHHHHHH
Q 009568 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-----PQP--PFDQVRPALPALAQLVHSN--DEEVLTDACW 266 (532)
Q Consensus 196 ~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~-----~~~--~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~ 266 (532)
+.+-+...++.++.++..+.++.+..++..+|+.+.+.. |.+ ........+..|+..+-.+ ........+.
T Consensus 184 q~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~s~lVs~i~ 263 (838)
T KOG2073|consen 184 QWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGTSLSVLVSGII 263 (838)
T ss_pred HHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCcchhhHHHHHH
Confidence 344456689999999977777888888888888877763 211 1122244555444433322 2222333333
Q ss_pred HHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcC---chHHHHHHhcCCCch
Q 009568 267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYG---ALPYLLGLLTHSHKK 343 (532)
Q Consensus 267 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~---~l~~L~~lL~~~~~~ 343 (532)
.+..+........... .....+.+-....++.+....+.++..-.. ...+.+.+.. .++.=...|..+ -.
T Consensus 264 vlI~ll~~~r~~~~~~---~~~~i~~q~~~~~d~~~~~~~l~~~~p~L~---dF~~lL~~~~~~~~l~tt~g~l~pP-LG 336 (838)
T KOG2073|consen 264 VLISLLNPRRDTVETN---STTTILSQPPSERDPIVLNELLGAMEPRLG---DFVQLLLEPEKLDLLETTYGELEPP-LG 336 (838)
T ss_pred HHHHhcCccccccccc---ceeeeecCCccccCccchHHHHHHHHHHHH---HHHHHhcCCccchhhhhhhhccCCC-cc
Confidence 3322221111000000 000011111112233444444444432221 1222222211 222222233322 34
Q ss_pred hHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcC
Q 009568 344 SIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNA 383 (532)
Q Consensus 344 ~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~ 383 (532)
..|...|..+.-+.. ++......+...+++..+++++...
T Consensus 337 ~~Rlki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y 377 (838)
T KOG2073|consen 337 FERLKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEY 377 (838)
T ss_pred hHHHHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhc
Confidence 567777777776655 5566666666777777777766554
No 345
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=65.52 E-value=49 Score=32.17 Aligned_cols=72 Identities=7% Similarity=0.038 Sum_probs=58.7
Q ss_pred CHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHH
Q 009568 372 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV-CPDPRIVTVCLEGLENILK 443 (532)
Q Consensus 372 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~d~~v~~~al~~L~~l~~ 443 (532)
.+..+.+-|...++.|...|+..+..++.++.......+........|..++. ...+.|....-..+.....
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999888888888888888888888888 6677777766666665554
No 346
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=64.93 E-value=50 Score=25.90 Aligned_cols=80 Identities=19% Similarity=0.139 Sum_probs=54.8
Q ss_pred CchHHHHHHhcCCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--chhHHHHHHHHHHHhhcCC
Q 009568 328 GALPYLLGLLTHSH---KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAWAISNATSGG 402 (532)
Q Consensus 328 ~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~ 402 (532)
|++..+...+.+.. +..-|+.+..+++.+..-....+.. +.|.++..|++. .++++..|..+...+...-
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~-----a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISS-----ALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 56667777776652 2355888988888887632233322 467777777764 6789999999998888776
Q ss_pred CHHHHHHHHH
Q 009568 403 THEQIKYLVR 412 (532)
Q Consensus 403 ~~~~~~~l~~ 412 (532)
+.+....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T smart00802 86 KEEELGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 6666666554
No 347
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=63.62 E-value=42 Score=27.97 Aligned_cols=101 Identities=15% Similarity=0.097 Sum_probs=50.7
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHH
Q 009568 245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCI 324 (532)
Q Consensus 245 ~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~ 324 (532)
-...|+.+|+.+...-....+..|.+=..-.-+. ..-++.+++..++.-=.....--...|+..||.+.-|..
T Consensus 23 Qt~~lielLk~~~~~~~~~lldLL~~RV~PGVD~-AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYN------ 95 (154)
T PF11791_consen 23 QTAELIELLKNPPAGEEAFLLDLLTNRVPPGVDE-AAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYN------ 95 (154)
T ss_dssp HHHHHHHHHHS--TT-HHHHHHHHHHSS--TT-H-HHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTT------
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHhcCCCCCCh-HHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCc------
Confidence 3445666666554333334444444433221111 223444444444433222222335667888887765543
Q ss_pred hhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568 325 ITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (532)
Q Consensus 325 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 358 (532)
+..|+.+|.+. ++.+...|+.+|.+..-
T Consensus 96 -----V~~LI~~L~~~-d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 96 -----VQPLIDLLKSD-DEELAEEAAEALKNTLL 123 (154)
T ss_dssp -----HHHHHHGG--G--TTTHHHHHHHHHT--T
T ss_pred -----HHHHHHHHcCC-cHHHHHHHHHHHHhhHH
Confidence 56899999888 88999999999998654
No 348
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=63.52 E-value=38 Score=36.69 Aligned_cols=160 Identities=16% Similarity=0.145 Sum_probs=95.2
Q ss_pred CCchhHhhhCCcHHHHHHhhcCCC-C------HHHHHHHHHHHHHHhcCChhhHHHHHhC--------CChHHHHHhhCC
Q 009568 107 SPPIEEVIQSGVVPRFVEFLMRED-Y------PQLQFEAAWALTNIASGTSENTKVVIDH--------GAVPIFVKLLAS 171 (532)
Q Consensus 107 ~~~~~~~i~~g~i~~Lv~lL~~~~-~------~~~~~~a~~~L~~l~~~~~~~~~~i~~~--------g~i~~L~~lL~~ 171 (532)
-++...+...+.+..++++...+. | .++...|+.+|+-+.. -|..+..+... .+|..++..-..
T Consensus 591 w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~-iP~iq~~La~~~~~n~~aydGiaIiL~~a~g 669 (1516)
T KOG1832|consen 591 WPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS-IPDIQKALAHATLSNNRAYDGIAIILDAANG 669 (1516)
T ss_pred chHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe-cchHHHHHHHHHhhcccccCceEEEeecccc
Confidence 355666777788888888876432 1 2556666766666555 45554444431 134444443221
Q ss_pred ----CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCCh--HHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccch
Q 009568 172 ----PSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL--IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPA 245 (532)
Q Consensus 172 ----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l--~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~ 245 (532)
-+++++..|+.+|-|+....|.+|...+..-+- ..=-..+...+......+.+.-+++-.+. ..+
T Consensus 670 ~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~---------ndG 740 (1516)
T KOG1832|consen 670 SNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRG---------NDG 740 (1516)
T ss_pred cccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhc---------Ccc
Confidence 379999999999999988777766543321000 00000111223334556666666666655 467
Q ss_pred HHHHHHhhcCC-----CHHHHHHHHHHHHHhccCCh
Q 009568 246 LPALAQLVHSN-----DEEVLTDACWALSYLSDGTN 276 (532)
Q Consensus 246 l~~L~~lL~~~-----d~~v~~~a~~~L~~l~~~~~ 276 (532)
+.+|+++|+.. -..++..||.+|.-|+..+.
T Consensus 741 IkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~t 776 (1516)
T KOG1832|consen 741 IKILLKLLQYKNPPTTADCIRALACRVLLGLARDDT 776 (1516)
T ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcH
Confidence 78888888743 34588888888888886544
No 349
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.45 E-value=1.3e+02 Score=29.71 Aligned_cols=114 Identities=17% Similarity=0.152 Sum_probs=80.4
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHH
Q 009568 245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCI 324 (532)
Q Consensus 245 ~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~ 324 (532)
.+.-|+..+.+.+..++.+++..|..+....+.... .--..+++.+..+..+.+..+|......+-.+...........
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 455677778889999999999999887765443322 2223567778888888888899888888877664333222222
Q ss_pred hhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCC
Q 009568 325 ITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360 (532)
Q Consensus 325 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 360 (532)
.-.=+++.+...|.+. .+.++..+...++-+....
T Consensus 138 ~~~l~~~yi~~AMThi-t~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHI-TPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred hHHHHHHHHHHHHhhc-cHHHHHhhHHHHHHHHHHc
Confidence 2223467777788888 8999999999999888643
No 350
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=62.38 E-value=1.5e+02 Score=28.47 Aligned_cols=158 Identities=11% Similarity=0.089 Sum_probs=95.4
Q ss_pred cchHHHHHHhhcCC----CHHHHHHHHHHHHHhccCChhHHHHHHHh-----------CchHHHHHhhCC------CCcc
Q 009568 243 RPALPALAQLVHSN----DEEVLTDACWALSYLSDGTNDKIQAVIEA-----------GVCPRLVELLGH------PSPS 301 (532)
Q Consensus 243 ~~~l~~L~~lL~~~----d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----------~~l~~L~~lL~~------~~~~ 301 (532)
.+++..|+.++-.. .-.++..|+.++.....++++....+++. .....|+..|-+ .++-
T Consensus 33 ~pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy 112 (312)
T PF04869_consen 33 VPVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPY 112 (312)
T ss_dssp EEHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HH
T ss_pred ccHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHH
Confidence 44555555544322 45688999999988887766665555543 112234444432 2333
Q ss_pred chhhHHHHHHHhhcCCcchhHHHhhc------------CchHHHHHHhcC----CCchhHHHHHHHHHHHHhcCCHHHHH
Q 009568 302 VLIPALRTVGNIVTGDDFQTQCIITY------------GALPYLLGLLTH----SHKKSIKKEACWTISNITAGNRDQIQ 365 (532)
Q Consensus 302 v~~~al~~L~nl~~~~~~~~~~~~~~------------~~l~~L~~lL~~----~~~~~v~~~a~~~L~nl~~~~~~~~~ 365 (532)
-..-|+.+|..+...++.....++.- ..++.+..+|.. ..++.++..-...|+-...+++..+.
T Consensus 113 ~~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~ 192 (312)
T PF04869_consen 113 RCWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVN 192 (312)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHH
Confidence 34568888899988887665554321 235666666643 33677888888888888889999999
Q ss_pred HHHHcC-CHHHHHHHHhc---CchhHHHHHHHHHHHhhc
Q 009568 366 AVIDAG-LVGPLVNLLQN---AEFDIKKEAAWAISNATS 400 (532)
Q Consensus 366 ~l~~~~-~i~~L~~ll~~---~~~~v~~~a~~aL~nl~~ 400 (532)
.++..+ .++.|+..... .+.-|+.-++..|+-+..
T Consensus 193 ~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 193 DFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp HHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred HHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 998654 68888887533 245566666666665544
No 351
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.13 E-value=96 Score=30.47 Aligned_cols=133 Identities=12% Similarity=0.163 Sum_probs=88.6
Q ss_pred chHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHH
Q 009568 287 VCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQ 365 (532)
Q Consensus 287 ~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~ 365 (532)
-+..|+..+.+.+..++..|+.-|-.+....+.... .--..+++.+..+..+. +..+|.....++-.+.. ..++...
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~-~~~vR~~~~qll~~~i~~~~~e~~s 136 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDD-DSLVRDALYQLLDSLILPACKEDQS 136 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCc-cccHHHHHHHHHHHHHhhcchhhhc
Confidence 466788888999999999999999888776443222 11224567777777777 88899988888887654 2333322
Q ss_pred HHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcC
Q 009568 366 AVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV 424 (532)
Q Consensus 366 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~ 424 (532)
.++.. +++.+...|.+-.+.+|..+...|.-++....+....+... +++.+.+++.
T Consensus 137 p~~~l-~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~--il~n~~d~i~ 192 (393)
T KOG2149|consen 137 PMVSL-LMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASK--ILENFKDVIS 192 (393)
T ss_pred chHHH-HHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHH--HHHHHHHHHH
Confidence 22221 45566666777789999999999988887666655555333 4444444443
No 352
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=60.61 E-value=35 Score=28.18 Aligned_cols=125 Identities=18% Similarity=0.248 Sum_probs=71.3
Q ss_pred HHHHHHHHhhhccCCC-CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCC---------hhHHHHH---H-H
Q 009568 219 MLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT---------NDKIQAV---I-E 284 (532)
Q Consensus 219 ~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~---------~~~~~~~---~-~ 284 (532)
++...+.+++.++... |.. ....++.++.++.+ ++......+..|..+...- ..+...+ + +
T Consensus 4 i~~kl~~~l~~i~~~~~P~~----Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQ----WPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTT----STTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhh----CchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH
Confidence 4455556666666543 222 23466677777666 3444444555554443210 1111111 1 1
Q ss_pred --hCchHHHHHhhCCCC----ccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHH
Q 009568 285 --AGVCPRLVELLGHPS----PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI 353 (532)
Q Consensus 285 --~~~l~~L~~lL~~~~----~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 353 (532)
..++..+...+.... ..+...++.++.....-. ....+.+.++++.+..+|.+ +.++..|+.+|
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~--~~~~i~~~~~l~~~~~~l~~---~~~~~~A~~cl 148 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWI--PIELIINSNLLNLIFQLLQS---PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTS---CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhC--CHHHhccHHHHHHHHHHcCC---HHHHHHHHHhC
Confidence 134444555554422 678889999999988733 34567777899999999954 45688887765
No 353
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=60.32 E-value=2.3e+02 Score=30.01 Aligned_cols=73 Identities=18% Similarity=0.166 Sum_probs=47.2
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh-------HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhh
Q 009568 117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN-------TKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVA 188 (532)
Q Consensus 117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~-------~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~ 188 (532)
+-+..+|+-+++++ ++++..|+..+......+... .+.+. .-...|..+..+ .+...+..++-+|.-||
T Consensus 48 ~dLellVervqdpd-~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLr--phy~~Lk~i~~~~~~~n~Kk~laDIlSvLa 124 (878)
T KOG2005|consen 48 GDLELLVERVQDPD-PDLQKAALESLREEIRSSTSSMTSVPKPLKFLR--PHYGVLKEIYESMADSNLKKWLADILSVLA 124 (878)
T ss_pred hhHHHHHHHhcCCC-hHHHHHHHHHHHHHHHhcccccccCCchhhhhc--cchhHHHHHHHhccCchhHhHHHHHHHHHh
Confidence 45788999999999 999999999998876533211 11111 112233333333 45677888888888887
Q ss_pred CCCc
Q 009568 189 GDSP 192 (532)
Q Consensus 189 ~~~~ 192 (532)
....
T Consensus 125 mt~s 128 (878)
T KOG2005|consen 125 MTMS 128 (878)
T ss_pred eeec
Confidence 5443
No 354
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=59.42 E-value=44 Score=24.24 Aligned_cols=35 Identities=20% Similarity=0.426 Sum_probs=30.7
Q ss_pred HHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009568 462 AQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETY 496 (532)
Q Consensus 462 ~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~ 496 (532)
...+.+.+.-..+..|..|+++.|...|..++..+
T Consensus 37 ~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~W 71 (76)
T cd00183 37 VEILKETRIGKKVNSLRKHSNEKIRKLAKALIKSW 71 (76)
T ss_pred HHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 55677788888999999999999999999999865
No 355
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=59.24 E-value=69 Score=25.07 Aligned_cols=80 Identities=19% Similarity=0.158 Sum_probs=54.7
Q ss_pred CchHHHHHHhcC---CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--chhHHHHHHHHHHHhhcCC
Q 009568 328 GALPYLLGLLTH---SHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAWAISNATSGG 402 (532)
Q Consensus 328 ~~l~~L~~lL~~---~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~ 402 (532)
|++..+...+.+ ..+...|+.+...++.+..-....+.. +.|.++..|++. .++++..|+.+...+...-
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~-----~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISS-----ARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 555666666655 325678889999999887633333322 457777777764 5689999999988888766
Q ss_pred CHHHHHHHHH
Q 009568 403 THEQIKYLVR 412 (532)
Q Consensus 403 ~~~~~~~l~~ 412 (532)
+.+....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T PF08064_consen 86 DEEDLGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 6666665544
No 356
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=59.23 E-value=11 Score=29.45 Aligned_cols=42 Identities=26% Similarity=0.335 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHH
Q 009568 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178 (532)
Q Consensus 136 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~ 178 (532)
...+..+..++. .|+.-..+++.|+++.|+.+|.+++..+..
T Consensus 64 d~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 345667777777 788888899999999999999998877643
No 357
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=59.10 E-value=11 Score=29.44 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=33.4
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHH
Q 009568 390 EAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 433 (532)
Q Consensus 390 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~ 433 (532)
..+..+..++. .|+....|++.|++..|+.+|.+++.++...
T Consensus 65 ~~Ik~l~~La~--~P~LYp~lv~l~~v~sL~~LL~HeN~DIai~ 106 (108)
T PF08216_consen 65 EEIKKLSVLAT--APELYPELVELGAVPSLLGLLSHENTDIAID 106 (108)
T ss_pred HHHHHHHHccC--ChhHHHHHHHcCCHHHHHHHHCCCCcceehc
Confidence 44556666666 5688999999999999999999999887543
No 358
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=58.69 E-value=12 Score=28.00 Aligned_cols=69 Identities=10% Similarity=0.074 Sum_probs=43.5
Q ss_pred hcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHH
Q 009568 200 SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWAL 268 (532)
Q Consensus 200 ~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L 268 (532)
+..++.|+..++....+.+++...+.++.++.......-..-...++..+.....++++.+...|..++
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 445688888887677788999999999998887642111112233333444444455666766666554
No 359
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=58.21 E-value=90 Score=26.66 Aligned_cols=109 Identities=14% Similarity=0.119 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHhcCC-----CCC---chhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHH-hC
Q 009568 89 SLQLEATTQFRKLLSIE-----RSP---PIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI-DH 159 (532)
Q Consensus 89 ~~~~~a~~~l~~l~~~~-----~~~---~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~-~~ 159 (532)
..+..|+..+..++... +.+ ....+++..+.+.+.+.+.+++ +.+-..+++++..+... .+..+. +.
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~~---~~~~Lk~el 112 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLSR---FRSHLKLEL 112 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 34455666665555432 112 4455667778899999888877 88999999999998852 222221 11
Q ss_pred C-ChHHHHH-hhCCCC--HHHHHHHHHHHHHhhCCCchhHHHHHhc
Q 009568 160 G-AVPIFVK-LLASPS--DDVREQAVWALGNVAGDSPRCRDLVLSQ 201 (532)
Q Consensus 160 g-~i~~L~~-lL~~~~--~~v~~~a~~~L~nl~~~~~~~~~~~~~~ 201 (532)
+ .++.++. ++.++. ..-++.++.++..++.+..-..+.....
T Consensus 113 e~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~lf~NY 158 (168)
T PF12783_consen 113 EVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDLFVNY 158 (168)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHHHHHc
Confidence 2 2344444 565533 4678889999999998766555554443
No 360
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=58.03 E-value=2.3e+02 Score=29.24 Aligned_cols=72 Identities=8% Similarity=0.127 Sum_probs=52.3
Q ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHH
Q 009568 330 LPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKY 409 (532)
Q Consensus 330 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 409 (532)
+..+-..+... ++.+|+..-.+++-+...+|.. +++..|-+....++.++..++..+++-+-.+........
T Consensus 643 lRhf~h~mhyg-~~hiR~~~PLa~gils~SnPQm-------~vfDtL~r~shd~dl~v~~ntIfamGLiGAGT~NaRlaq 714 (881)
T COG5110 643 LRHFSHSMHYG-SSHIRSVLPLAYGILSPSNPQM-------NVFDTLERSSHDGDLNVIINTIFAMGLIGAGTLNARLAQ 714 (881)
T ss_pred HHHhhhHhhcC-cHHHHHHHHHHHhcccCCCcch-------HHHHHHHHhccccchhHHHHHHHHhhccccCcchHHHHH
Confidence 34555666666 8889988888888887776652 366788888888899999999999987766544443333
No 361
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=57.98 E-value=3.5e+02 Score=35.00 Aligned_cols=156 Identities=6% Similarity=-0.004 Sum_probs=76.6
Q ss_pred cccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhh---------CCCCccchhhHHHHHH
Q 009568 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL---------GHPSPSVLIPALRTVG 311 (532)
Q Consensus 241 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL---------~~~~~~v~~~al~~L~ 311 (532)
....++..++.-+.++++.|+..+..+|.+++.....-+. .++.++.+++ ....-..+.-.+.++.
T Consensus 1123 ~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~-----~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~ 1197 (3550)
T KOG0889|consen 1123 SAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVV-----KLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAIT 1197 (3550)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHH-----HHHHHHHHHHhccccccccccCCHHHHhhhHHHHH
Confidence 3456777778888888889999999999988755421111 1222222222 2222223333333333
Q ss_pred HhhcCCcch---hHHHhh------c---CchHH---HHHHhcCCC---chhHHHHHHHHHHHHhcCCHHHHHH--HHHcC
Q 009568 312 NIVTGDDFQ---TQCIIT------Y---GALPY---LLGLLTHSH---KKSIKKEACWTISNITAGNRDQIQA--VIDAG 371 (532)
Q Consensus 312 nl~~~~~~~---~~~~~~------~---~~l~~---L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~--l~~~~ 371 (532)
.++.-.+.. ...+.. . ..-.. +.+...... ....|..+..+++......+..... -...+
T Consensus 1198 fC~~l~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~k 1277 (3550)
T KOG0889|consen 1198 FCLSLGPCLFDFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREK 1277 (3550)
T ss_pred HHHHcCCcccCchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhH
Confidence 333322211 111100 0 00000 111111110 1234555555555554422211111 11234
Q ss_pred CHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009568 372 LVGPLVNLLQNAEFDIKKEAAWAISNATSG 401 (532)
Q Consensus 372 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 401 (532)
++..++..+....+++...+..++......
T Consensus 1278 ii~v~fk~l~~~~~Ei~~~~~~~l~~v~~~ 1307 (3550)
T KOG0889|consen 1278 IIAVFFKSLYKRSSELIEVALEGLRKVLAQ 1307 (3550)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhhhhc
Confidence 677888888888889999998888887764
No 362
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=57.75 E-value=2e+02 Score=28.47 Aligned_cols=102 Identities=13% Similarity=0.077 Sum_probs=61.3
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC----ch-hHHHHHHHHHHHhhcCCCHHHHH-HHHHcCC
Q 009568 342 KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA----EF-DIKKEAAWAISNATSGGTHEQIK-YLVREGC 415 (532)
Q Consensus 342 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~----~~-~v~~~a~~aL~nl~~~~~~~~~~-~l~~~~~ 415 (532)
+..+..++..||+|+..+++...+...+......+++.+... .+ .+...=+..|.-+..- .+..+. .+.+.++
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltal-e~~~Rsql~~~l~G 188 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTAL-ETDHRSQLIAELLG 188 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHh-hHHHHHHHHHHhcc
Confidence 457889999999999998888777777776666666655332 11 2222222222222222 334443 4456788
Q ss_pred hHHHHhhcCCC---C---------HHHHHHHHHHHHHHHHh
Q 009568 416 IKPLCDLFVCP---D---------PRIVTVCLEGLENILKV 444 (532)
Q Consensus 416 l~~L~~lL~~~---d---------~~v~~~al~~L~~l~~~ 444 (532)
++.+.+.|+++ | ++-...|.++|..++..
T Consensus 189 l~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNv 229 (532)
T KOG4464|consen 189 LELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNV 229 (532)
T ss_pred cHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhhe
Confidence 88888888642 1 24455666666666654
No 363
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=57.24 E-value=1.2e+02 Score=26.96 Aligned_cols=140 Identities=14% Similarity=0.122 Sum_probs=80.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC-CCccchhhH-HHHHHHhhcCCcchhHH
Q 009568 246 LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPA-LRTVGNIVTGDDFQTQC 323 (532)
Q Consensus 246 l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a-l~~L~nl~~~~~~~~~~ 323 (532)
...+..+..++..+.+..++..+.......+. ..++.+-.++.. +++.+.... -.+++.+....
T Consensus 53 ~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~--------~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------ 118 (213)
T PF08713_consen 53 YELADELWESGYREERYLALLILDKRRKKLTE--------EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------ 118 (213)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHHHCGGG--H--------HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------
T ss_pred HHHHHHHcCCchHHHHHHHHHHhHHHhhhhhH--------HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------
Confidence 34455566777777777777766543321110 134455555554 344444433 33444443211
Q ss_pred HhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC
Q 009568 324 IITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGT 403 (532)
Q Consensus 324 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 403 (532)
....+.+...+.+. ++-+++.++-++........ ... ++..+...+.+++..|+..+.|+|..+... +
T Consensus 119 ---~~~~~~~~~W~~s~-~~w~rR~~~v~~~~~~~~~~--~~~-----~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~-~ 186 (213)
T PF08713_consen 119 ---PEALELLEKWAKSD-NEWVRRAAIVMLLRYIRKED--FDE-----LLEIIEALLKDEEYYVQKAIGWALREIGKK-D 186 (213)
T ss_dssp ---GGHHHHHHHHHHCS-SHHHHHHHHHCTTTHGGGCH--HHH-----HHHHHHHCTTGS-HHHHHHHHHHHHHHCTT--
T ss_pred ---HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHhcC--HHH-----HHHHHHHHcCCchHHHHHHHHHHHHHHHHh-C
Confidence 34567788888888 88888888777666554311 111 234445556777899999999999999887 4
Q ss_pred HHHHHHHH
Q 009568 404 HEQIKYLV 411 (532)
Q Consensus 404 ~~~~~~l~ 411 (532)
++....++
T Consensus 187 ~~~v~~~l 194 (213)
T PF08713_consen 187 PDEVLEFL 194 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444333
No 364
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=57.17 E-value=1.1e+02 Score=25.33 Aligned_cols=72 Identities=14% Similarity=0.094 Sum_probs=54.5
Q ss_pred HHHHHHHHhc-CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHH-HHhhcCC---CCHHHHHHHHHHHHHHHHh
Q 009568 373 VGPLVNLLQN-AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKP-LCDLFVC---PDPRIVTVCLEGLENILKV 444 (532)
Q Consensus 373 i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~-L~~lL~~---~d~~v~~~al~~L~~l~~~ 444 (532)
+..|..-+.. .++.++..|+..|-.++.++....-..+...+.+.. |+.++.. .+..|...++..+...-..
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 3445555553 588899999999999999888887788788888987 8888863 2357888888877776543
No 365
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=56.96 E-value=1.4e+02 Score=26.47 Aligned_cols=142 Identities=16% Similarity=0.139 Sum_probs=88.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHH-HHHHHHhhCCCchhHH
Q 009568 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQA-VWALGNVAGDSPRCRD 196 (532)
Q Consensus 119 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a-~~~L~nl~~~~~~~~~ 196 (532)
...+..+..++. .+.+..|+.++......... . .++.+-..+.. .+..+.... ..+++.+....+
T Consensus 53 ~~l~~~L~~~~~-~E~~~la~~il~~~~~~~~~---~-----~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~~---- 119 (213)
T PF08713_consen 53 YELADELWESGY-REERYLALLILDKRRKKLTE---E-----DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKHP---- 119 (213)
T ss_dssp HHHHHHHHCSSC-HHHHHHHHHHHHHCGGG--H---H-----HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHHG----
T ss_pred HHHHHHHcCCch-HHHHHHHHHHhHHHhhhhhH---H-----HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhH----
Confidence 344556677776 88898888887664431111 0 24555566655 566666655 455565532111
Q ss_pred HHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q 009568 197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN 276 (532)
Q Consensus 197 ~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~ 276 (532)
...+.+...+ .+.++-.++.++-++...... .....++..+...+.+++..++..+.|+|..++...+
T Consensus 120 -----~~~~~~~~W~-~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 120 -----EALELLEKWA-KSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp -----GHHHHHHHHH-HCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred -----HHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCH
Confidence 1234444455 777888888887666555543 2334566666677788899999999999999998888
Q ss_pred hHHHHHHHh
Q 009568 277 DKIQAVIEA 285 (532)
Q Consensus 277 ~~~~~~~~~ 285 (532)
+.....+..
T Consensus 188 ~~v~~~l~~ 196 (213)
T PF08713_consen 188 DEVLEFLQK 196 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666654
No 366
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.30 E-value=60 Score=35.62 Aligned_cols=93 Identities=12% Similarity=0.108 Sum_probs=63.5
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHh---cCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLL---SIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE 151 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~---~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 151 (532)
.+.+.+..|.+.+..+|.+|+..|...+ +..++.-.. .-....|.++..+...+ +-+...|..++.+++....+
T Consensus 804 Il~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlP--lvhq~W~~vie~~~~k~-~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 804 ILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLP--LVHQTWPSVIECLLCKD-PLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhH--HHHhhhhHHHHHHhcCc-hHHHHHHHHHHHHHHHHhhh
Confidence 3456667788889999999999887532 221111111 12347889999999888 89999999999999885555
Q ss_pred hHHHHHhCCChHHHHHhhC
Q 009568 152 NTKVVIDHGAVPIFVKLLA 170 (532)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL~ 170 (532)
....-+-..++|.+-.++.
T Consensus 881 Fv~sR~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 881 FVASRFLEDVLPWLKHLCQ 899 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5444333466677666553
No 367
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=56.01 E-value=1.1e+02 Score=29.87 Aligned_cols=110 Identities=11% Similarity=0.097 Sum_probs=65.5
Q ss_pred ChHHHHHHhhhh-----h-hhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc----------CCCHHHHHHHHH
Q 009568 203 ALIPLLAQLNER-----A-KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH----------SNDEEVLTDACW 266 (532)
Q Consensus 203 ~l~~L~~ll~~~-----~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~----------~~d~~v~~~a~~ 266 (532)
.+|.++..+... . +.......+.++..|..++...-......++|.++.++- .++..++..|+.
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 356666665321 1 466677777888888887644444556778888887662 134578999999
Q ss_pred HHHHhccCChhHHHHHHHhCchHHHHHhhCCCCc--cchhhHHHHHHHh
Q 009568 267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP--SVLIPALRTVGNI 313 (532)
Q Consensus 267 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~--~v~~~al~~L~nl 313 (532)
.+..++........ -+...++..+...+.++.. ....-|+..|..+
T Consensus 291 ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 291 LLAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99998854332212 1233555566655554432 2245555555544
No 368
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=55.74 E-value=1.3e+02 Score=30.54 Aligned_cols=305 Identities=14% Similarity=0.155 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHhhCCCchhHHHHHhcCChH-HHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCC-cccccchHHHHHH
Q 009568 174 DDVREQAVWALGNVAGDSPRCRDLVLSQGALI-PLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP-FDQVRPALPALAQ 251 (532)
Q Consensus 174 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~-~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~ 251 (532)
...|..++.+||.++..-+..... .+.. .|+..| .+....-+..++.++...+....... ......+.+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~----~~~~~~L~~~L-~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQ----EIFQPLLLPYL-NSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHH----HHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 455778888999887643221100 1233 466666 55544445555556665555431111 1113455567777
Q ss_pred hhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchH-----HHHHhhC---CCCcc--chhhHHHHHHHh----hcCC
Q 009568 252 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP-----RLVELLG---HPSPS--VLIPALRTVGNI----VTGD 317 (532)
Q Consensus 252 lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~-----~L~~lL~---~~~~~--v~~~al~~L~nl----~~~~ 317 (532)
+|..+.+..-......+..+-..+......+.+.|.++ .|-.... ...+. -...|-.+.+.. ...-
T Consensus 176 ~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l 255 (441)
T PF12054_consen 176 ILENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSL 255 (441)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhc
Confidence 77755433333344444444444445555666666633 1111111 11111 112222222221 1100
Q ss_pred c-ch----hHHHhhc-CchHHHHHHhc---CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-chhH
Q 009568 318 D-FQ----TQCIITY-GALPYLLGLLT---HSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA-EFDI 387 (532)
Q Consensus 318 ~-~~----~~~~~~~-~~l~~L~~lL~---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v 387 (532)
. .. .+.+-+. .-+...+...+ ...+..|+..++.++..+-.- |+.. .-+|..|++-++.+ +..+
T Consensus 256 ~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~l-P~KL-----nPiIrpLMdSIK~Een~~L 329 (441)
T PF12054_consen 256 SPSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGL-PKKL-----NPIIRPLMDSIKREENELL 329 (441)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCc-----cHHHHHHHHHhhccccHHH
Confidence 0 00 0000000 00001111110 011233444444444444321 2211 12566777777765 7889
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCC---CHHHH--HHHHHHHHHHHHhhhhhhhccCCCccchHHH
Q 009568 388 KKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP---DPRIV--TVCLEGLENILKVGEAEKNMGTATADVNQYA 462 (532)
Q Consensus 388 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~---d~~v~--~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~ 462 (532)
|..++.+|..++.... . ...=....++..||.+|-.+ .|.+. ...-+.+-.+.+.................-.
T Consensus 330 Q~rsA~slA~Li~~~~-~-rkp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~gILsl~k~~~~~~~~~~~~~~~~~~~ 407 (441)
T PF12054_consen 330 QQRSAESLARLIQLCV-D-RKPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKDGILSLRKEEDKADHADAASEEREQKE 407 (441)
T ss_pred HHHHHHHHHHHHHHHh-C-CCCCCcHHHHHHHhhhhccCcccCCCCCCCcchhhcccchhhhcccccccccccchhhhhh
Confidence 9999999988865321 0 00001123677777777422 22221 1111222222221111100000000122234
Q ss_pred HHHHHhccHHHHHHHhcCCCHHHHHHHHH
Q 009568 463 QLVEEAEGLEKIENLQSHDNNEIYEKAVK 491 (532)
Q Consensus 463 ~~~~~~g~~~~l~~L~~~~~~~v~~~a~~ 491 (532)
..+.+-|+...|+.|..+-.+++.++--.
T Consensus 408 a~I~RrGA~~aL~~l~~~FG~~Lf~~lP~ 436 (441)
T PF12054_consen 408 ARIQRRGAELALEQLAKRFGSSLFEKLPK 436 (441)
T ss_pred hHHHhcCHHHHHHHHHHHHhHHHHHhhhH
Confidence 56888999999999988877777665443
No 369
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=55.12 E-value=91 Score=25.88 Aligned_cols=72 Identities=15% Similarity=0.211 Sum_probs=51.7
Q ss_pred ChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHH-HHHHhc---CCCHHHHHHH
Q 009568 415 CIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEK-IENLQS---HDNNEIYEKA 489 (532)
Q Consensus 415 ~l~~L~~lL~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-l~~L~~---~~~~~v~~~a 489 (532)
++..|..-|. ..++.++..+|..|..+++.+... |-..+..-+.++. |..+.. +.+..|+.+.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~------------fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~ki 106 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHR------------FHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKV 106 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHH------------HHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHH
Confidence 4555666565 468999999999999998866432 5555666677775 777654 2456899999
Q ss_pred HHHHHHhCC
Q 009568 490 VKILETYWL 498 (532)
Q Consensus 490 ~~il~~~~~ 498 (532)
..+|..+-.
T Consensus 107 l~li~~W~~ 115 (141)
T cd03565 107 LALIQAWAD 115 (141)
T ss_pred HHHHHHHHH
Confidence 999998753
No 370
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.96 E-value=3.2e+02 Score=29.95 Aligned_cols=252 Identities=14% Similarity=0.114 Sum_probs=144.7
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009568 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV 155 (532)
Q Consensus 76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 155 (532)
+..+=+.++++....+-+++..+-++.... |.- .++. ..+=.|.+.+..++ -.+|...+++... +..+...
T Consensus 26 ~~~ldkGlr~~~t~eqpeavvr~~RLFek~--Pfp-ifiN-s~llrLaDaF~~Gn-~llRf~V~rv~~q----~g~hln~ 96 (970)
T KOG1988|consen 26 LMELDKGLRSGKTSEQPEAVVRFPRLFEKY--PFP-IFIN-SQLLRLADAFPVGN-NLLRFAVLRVDQQ----SGKHLNK 96 (970)
T ss_pred HHHHhhcccccccccchHHHHHHHHHHhhC--Cch-hhhh-HHHHHHHHHhccCc-HHHHHHHHHHHhh----ccccchh
Confidence 344556777777777778888887776542 221 2332 23445666667777 6888877777663 2222223
Q ss_pred HHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568 156 VID-HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (532)
Q Consensus 156 i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~ 234 (532)
+.. ...+..+.....+.|+.-|..++..++.+..--| +.+..+.++..-..+.+.--.+.++.+...++...
T Consensus 97 v~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lip-------Efn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~s 169 (970)
T KOG1988|consen 97 VLNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIP-------EFNQVHHLIRISLDSHHELEVEAAEFAAACFAAQS 169 (970)
T ss_pred hhhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcc-------cccchhHHHHHHhcCccchhhHHHHHHHhhhhhhh
Confidence 332 1233334444556889999999999998754333 34455666655434444444556666666666542
Q ss_pred CCCCcccccchHHHHHHhhcCCC--HHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC-CCccchhhHHHHHH
Q 009568 235 PQPPFDQVRPALPALAQLVHSND--EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVG 311 (532)
Q Consensus 235 ~~~~~~~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~ 311 (532)
.....++.-.+..++...+ +......+.++..+.... .....+....+.++.. +..+....-+.++.
T Consensus 170 ----k~FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~a------t~A~ra~~l~m~lv~~tps~d~~v~fL~stT 239 (970)
T KOG1988|consen 170 ----KDFACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHA------TGASRAFGLCMSLVSGTPSIDRVVAFLYSTT 239 (970)
T ss_pred ----hhhHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchh------hhhHHHHHHHHHHhcCCCcccceeeehhhhH
Confidence 1122233444555555443 344556666777765321 1222444555666543 45555666778888
Q ss_pred HhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568 312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (532)
Q Consensus 312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 358 (532)
+++...- ..-.+-+..+...++.+....++..+.|.+.+++.
T Consensus 240 ~Lasrs~-----~ai~eq~d~l~q~~ked~~kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 240 NLASRSL-----VAISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK 281 (970)
T ss_pred HHHHHHH-----HHhHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence 8875322 11224566788888755356677778888887764
No 371
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=54.75 E-value=3.3e+02 Score=29.94 Aligned_cols=114 Identities=15% Similarity=0.173 Sum_probs=65.5
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcc
Q 009568 373 VGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMG 452 (532)
Q Consensus 373 i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~ 452 (532)
...+...+..+++...+.++.++.+++.-....... ...-++.-..-.+..-..+...+..+|.++....
T Consensus 443 W~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~------- 512 (727)
T PF12726_consen 443 WKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFD------- 512 (727)
T ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCC-------
Confidence 344555556667777777777777775432100000 0000111110011111123333344444444332
Q ss_pred CCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCc
Q 009568 453 TATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEED 501 (532)
Q Consensus 453 ~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~~ 501 (532)
.......+.+.+....+..+.-|+++++|+.|.++|...|+.+.
T Consensus 513 -----~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~ 556 (727)
T PF12726_consen 513 -----PSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG 556 (727)
T ss_pred -----HHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc
Confidence 33467788888999999999999999999999999999997543
No 372
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=54.60 E-value=2.4e+02 Score=32.42 Aligned_cols=238 Identities=15% Similarity=0.131 Sum_probs=121.1
Q ss_pred cchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHH-HHHHhCch--------HHHHHhhCC-CCccchhhHHHHHHH
Q 009568 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQ-AVIEAGVC--------PRLVELLGH-PSPSVLIPALRTVGN 312 (532)
Q Consensus 243 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~l--------~~L~~lL~~-~~~~v~~~al~~L~n 312 (532)
.+.+..|+..+-++..+++.-+..+++.+......... ..++.-++ ..+-.+..+ --..++..+.++|+.
T Consensus 76 ~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~ 155 (1549)
T KOG0392|consen 76 LSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGA 155 (1549)
T ss_pred HHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHH
Confidence 44556666666677778877777777766533221111 11111111 111111111 123678889999998
Q ss_pred hhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHH
Q 009568 313 IVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAA 392 (532)
Q Consensus 313 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 392 (532)
+....+... -...+..+..++..+ ..+++......+....+-..+....+.. .+++..++-+.+.+.+++..|+
T Consensus 156 ~l~~~~~s~----~~~~~~il~q~~~q~-~w~ir~Ggll~iky~~air~d~l~~~~~-~vl~~~i~~L~ds~ddv~~~aa 229 (1549)
T KOG0392|consen 156 YLKHMDESL----IKETLDILLQMLRQP-NWEIRHGGLLGIKYNVAIRQDLLFQLLN-LVLDFVIEGLEDSDDDVRSVAA 229 (1549)
T ss_pred HHHhhhhHh----hHHHHHHHHHHHcCc-chhheechHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhcchHHHHHHH
Confidence 887544211 124566788888776 6667666555555443321222222222 2567777888888999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHH--cCChHHHHhhcC--CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHh
Q 009568 393 WAISNATSGGTHEQIKYLVR--EGCIKPLCDLFV--CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEA 468 (532)
Q Consensus 393 ~aL~nl~~~~~~~~~~~l~~--~~~l~~L~~lL~--~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (532)
..+.-+++.-.......+.. .-+...+..+.+ +....+. ..+..++...+... -+...=.+-
T Consensus 230 ~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~----~ll~~l~~~~evl~----------l~~~~n~~~ 295 (1549)
T KOG0392|consen 230 QFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIM----HLLDELCIENEVLD----------LFEQQNLEV 295 (1549)
T ss_pred HHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHH----HHHHHHhhhHHHHH----------HHHHhhhhh
Confidence 98887765321111111111 112222222222 1111111 11222222111100 011111124
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCC
Q 009568 469 EGLEKIENLQSHDNNEIYEKAVKILETYWLEE 500 (532)
Q Consensus 469 g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~ 500 (532)
|....+.....|.-..++..+...+..+.+.+
T Consensus 296 ~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 296 GLVPRLWPFLRHTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66677777777777778888888888777655
No 373
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.57 E-value=2.9e+02 Score=32.36 Aligned_cols=198 Identities=12% Similarity=0.179 Sum_probs=105.6
Q ss_pred hHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHH----HHHHhcCCCchhHHHHHHHHHHHHhcCCHHH
Q 009568 288 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPY----LLGLLTHSHKKSIKKEACWTISNITAGNRDQ 363 (532)
Q Consensus 288 l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~----L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~ 363 (532)
+..++.-|...++..+..|+..++.+....+.. ... +++|. +.++..+. +..||...-.++..+...-...
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e--~~~--~il~~w~~i~~kl~~d~-~~~VR~~t~~v~s~l~t~lkk~ 117 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTE--ELK--GILPEWLVIYAKLIIDE-DRTVRLLTHDVFSKLLTKLKKK 117 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccch--HHh--hhHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677788899999999999999755422 222 23333 33444555 8899999999999987654444
Q ss_pred HHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhc-------------------C
Q 009568 364 IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLF-------------------V 424 (532)
Q Consensus 364 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL-------------------~ 424 (532)
+.+.++. ++|...-.-.+.+..|-..|-..+............-.+.+..+...+.+.+ +
T Consensus 118 lsp~LK~-li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E 196 (1312)
T KOG0803|consen 118 LSPFLKS-LIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELE 196 (1312)
T ss_pred hhHHHHh-hhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHH
Confidence 4444443 3443332223334556566655555554422111111111111222222221 1
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009568 425 CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 498 (532)
Q Consensus 425 ~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 498 (532)
..-.++...++.++..+++......+ .......+.-.-.-+.+..+..|+.+.+.....+++-.+.+
T Consensus 197 ~k~~Rvi~ssLl~l~~l~~~~~~~~e-------l~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~ 263 (1312)
T KOG0803|consen 197 SKYQRVISSSLLLLLKLFKITGDEEE-------LHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLID 263 (1312)
T ss_pred HhhHHHHHHHHHHHHHHHHHhCchHh-------hhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHh
Confidence 12234666677777777643221111 01001111112235778888899998888777776655443
No 374
>KOG3132 consensus m3G-cap-specific nuclear import receptor (Snurportin1) [RNA processing and modification]
Probab=53.97 E-value=12 Score=33.49 Aligned_cols=43 Identities=26% Similarity=0.384 Sum_probs=35.5
Q ss_pred HHHhhhcCCCCCchHHhhhhhHHHHHHHHHhhHHHHHhhhhhc
Q 009568 10 EVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREG 52 (532)
Q Consensus 10 ~~~~~~~k~~~~~~~~~~~r~~~~~~~Rk~~r~~~~~~~r~~~ 52 (532)
..|...||+-.+..|.|.||++...++.|.+|-+...+.|+..
T Consensus 24 hpR~sQykn~~s~aeQ~arrr~~llelQks~r~D~~~~~r~lA 66 (325)
T KOG3132|consen 24 HPRQSQYKNLTSDAEQRARRRASLLELQKSSRPDVDPEIRSLA 66 (325)
T ss_pred CchhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCccHHHHhhc
Confidence 4788999995555677777777799999999999999999764
No 375
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.90 E-value=3.1e+02 Score=29.19 Aligned_cols=307 Identities=14% Similarity=0.111 Sum_probs=140.4
Q ss_pred hHHHHHhh-CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcc
Q 009568 162 VPIFVKLL-ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240 (532)
Q Consensus 162 i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 240 (532)
++.|++-| .+.++.-|..|-.+|..++ ++|++-. ...-++.++..+--.--|..+|..+.......+..
T Consensus 7 Le~lCk~LY~s~D~~~R~~AE~~L~e~s-~specls---------kCqlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~ 76 (1082)
T KOG1410|consen 7 LESLCKDLYESTDPTARHRAEKALAELS-ESPECLS---------KCQLLLERGSYPYSQMLASTCLMKLVSRKTPLPLE 76 (1082)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHc-cCHHHHH---------HHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHH
Confidence 34455533 4467777888888888774 4444322 22222323333444444555666665554322222
Q ss_pred cccchHHHHHHhhcCCC----HHHHHHHHHHHHHhccC---ChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHh
Q 009568 241 QVRPALPALAQLVHSND----EEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313 (532)
Q Consensus 241 ~~~~~l~~L~~lL~~~d----~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl 313 (532)
..-.+-..++..+.+.. +-+....+..++.++.- .....+.... +.+..+...|..++.+--.-++.+|..+
T Consensus 77 qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FR-d~v~~~~kfl~~~~ve~~~igv~iLsqL 155 (1082)
T KOG1410|consen 77 QRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFR-DPVDDVTKFLQMDNVEHCIIGVQILSQL 155 (1082)
T ss_pred HHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhh-hhHHHHHHHhccCchHHHHHHHHHHHHH
Confidence 22333445555555433 33444555555555421 1111122222 5667777777777666556666666666
Q ss_pred hcCCcchhHHHhhcCch-----HHHHHHhcCCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHcCCHHHHHHHH-----h
Q 009568 314 VTGDDFQTQCIITYGAL-----PYLLGLLTHSHKKSIKKEACWTISNITAG--NRDQIQAVIDAGLVGPLVNLL-----Q 381 (532)
Q Consensus 314 ~~~~~~~~~~~~~~~~l-----~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~ll-----~ 381 (532)
+..-. + ..+.. ..+..-+.+..-.+|-.-||..|.....- +.....-+... ++..-++.+ .
T Consensus 156 vqemN-~-----~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~-vL~L~l~Cl~FDfiG 228 (1082)
T KOG1410|consen 156 VQEMN-Q-----ADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQ-VLKLNLNCLNFDFIG 228 (1082)
T ss_pred HHHhh-C-----CCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHH-HHHHHhhhccccccc
Confidence 53211 0 00111 11111111110122333344444333310 01100011100 111111111 1
Q ss_pred cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHH
Q 009568 382 NAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQY 461 (532)
Q Consensus 382 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~ 461 (532)
+...+ ...-+++. ......+..+.+...++.+.++..+-.+..-..++.+|..+.......-+ +++-..|
T Consensus 229 ss~DE----ssed~ctV--QIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN----~aeRa~y 298 (1082)
T KOG1410|consen 229 SSTDE----SSEDLCTV--QIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFN----GAERAKY 298 (1082)
T ss_pred ccccc----ccccccce--ecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhC----CHHHHHH
Confidence 11000 00011111 11223444455566788888888887777777888887777554333211 1122335
Q ss_pred HHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009568 462 AQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW 497 (532)
Q Consensus 462 ~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~ 497 (532)
...+. .|..+.|++=+.-.+++-|..-..++.++-
T Consensus 299 l~~Lv-~Gvk~il~np~~LsD~~nyHeFCRllaRlk 333 (1082)
T KOG1410|consen 299 LQHLV-EGVKRILENPQGLSDPANYHEFCRLLARLK 333 (1082)
T ss_pred HHHHH-HHHHHHHhCCcCCCCcchHHHHHHHHHHHH
Confidence 55554 566777777777777777776666666653
No 376
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=52.71 E-value=3.6e+02 Score=29.85 Aligned_cols=178 Identities=13% Similarity=0.093 Sum_probs=90.5
Q ss_pred cchHHHHHHhhcCC-CHHHHHHHHHHHHHhccC------ChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhc
Q 009568 243 RPALPALAQLVHSN-DEEVLTDACWALSYLSDG------TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 315 (532)
Q Consensus 243 ~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~------~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~ 315 (532)
...++.++.++... ++.+...+...|+.++.. ++.....+...+.+..|+..+-.+. .-....+..+.-+.+
T Consensus 189 ~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~-~s~s~lVs~i~vlI~ 267 (838)
T KOG2073|consen 189 QELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDG-TSLSVLVSGIIVLIS 267 (838)
T ss_pred HHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCC-cchhhHHHHHHHHHH
Confidence 56888899888744 677888888888777654 3445555666677777666654422 112222222222222
Q ss_pred CCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC---HHHHHHHHhcCchhHHHHHH
Q 009568 316 GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGL---VGPLVNLLQNAEFDIKKEAA 392 (532)
Q Consensus 316 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~---i~~L~~ll~~~~~~v~~~a~ 392 (532)
.....+..+........+.+-.... ++.+....+.++..-. .+..+.+.+... ++.=...+..+=...|...+
T Consensus 268 ll~~~r~~~~~~~~~~i~~q~~~~~-d~~~~~~~l~~~~p~L---~dF~~lL~~~~~~~~l~tt~g~l~pPLG~~Rlki~ 343 (838)
T KOG2073|consen 268 LLNPRRDTVETNSTTTILSQPPSER-DPIVLNELLGAMEPRL---GDFVQLLLEPEKLDLLETTYGELEPPLGFERLKIV 343 (838)
T ss_pred hcCcccccccccceeeeecCCcccc-CccchHHHHHHHHHHH---HHHHHHhcCCccchhhhhhhhccCCCcchHHHHHH
Confidence 1111111000000011111112222 3444444444443322 122222222211 12112222223346788888
Q ss_pred HHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC
Q 009568 393 WAISNATSGGTHEQIKYLVREGCIKPLCDLFVC 425 (532)
Q Consensus 393 ~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~ 425 (532)
..+..+....+......+...+++..+++++..
T Consensus 344 eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~ 376 (838)
T KOG2073|consen 344 ELIAELLHCSNMTLLNELRAEGIAERLLDLFFE 376 (838)
T ss_pred HHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHh
Confidence 888888887777777777777888777777664
No 377
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=51.24 E-value=2.7e+02 Score=28.66 Aligned_cols=77 Identities=14% Similarity=0.232 Sum_probs=56.1
Q ss_pred CHHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhc
Q 009568 403 THEQIKYLVREGCIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS 479 (532)
Q Consensus 403 ~~~~~~~l~~~~~l~~L~~lL~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~ 479 (532)
......+|.+.++++.|+++|+ ..++.+...|.+.|..|+..........+...+.++....+.....+++|-..+-
T Consensus 51 ~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL 128 (475)
T PF04499_consen 51 PTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIML 128 (475)
T ss_pred hHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHh
Confidence 3456777788999999999997 4567888999999999988776432211111146888888888888887777654
No 378
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=50.15 E-value=2.4e+02 Score=28.00 Aligned_cols=239 Identities=12% Similarity=0.080 Sum_probs=104.0
Q ss_pred chhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCC-CHHHHHHHHHHHHH
Q 009568 192 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN-DEEVLTDACWALSY 270 (532)
Q Consensus 192 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~ 270 (532)
+......++..++-.|+.++ +++|+.-+...-.+|.++...-.........++-..+.+.+... .-.-....+..++.
T Consensus 167 ~~vaK~yid~~FvlkLLdLF-dSEDpRERe~LKT~LhrIygKfl~~r~firk~iNNif~~FIyEte~hnGIaELLEIlgS 245 (457)
T KOG2085|consen 167 PSVAKKYIDQKFVLKLLDLF-DSEDPREREFLKTILHRIYGKFLVHRPFIRKSINNIFLRFIYETERHNGIAELLEILGS 245 (457)
T ss_pred HHHHHHHhhHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHhhhHHHHHHhhcchhhhhcccccccCCHHHHHHHHHH
Confidence 34445566777888888888 78888777766666665554221111111111112233333322 11223445555555
Q ss_pred hccCChhHHHHHHHhCchHHHHHhhCCCC-ccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHH
Q 009568 271 LSDGTNDKIQAVIEAGVCPRLVELLGHPS-PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA 349 (532)
Q Consensus 271 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a 349 (532)
+..+..--.+.=..--.+..|+.+-.... .-......+|+..++..++..+..++. .|++.--.. +..-...-
T Consensus 246 iIngfAlPlKEEhkiFL~rvLipLhk~k~l~~yh~QLaYcivQfveKd~kl~~~VIr-----glLK~WP~t-nS~KEVmF 319 (457)
T KOG2085|consen 246 IINGFALPLKEEHKLFLVRVLIPLHKPKSLSLYHKQLAYCIVQFVEKDPKLTETVIR-----GLLKYWPKT-NSSKEVMF 319 (457)
T ss_pred hcCcccCcchhHHHHHHHHhhhccccCCCccccccccceeeeeeeccCccccHHHHH-----HHHHhcCCC-CCcceeee
Confidence 55432100000000011222333322211 112233345555555555544443322 122211111 00000011
Q ss_pred HHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcC---ChHHHHhhcCC
Q 009568 350 CWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREG---CIKPLCDLFVC 425 (532)
Q Consensus 350 ~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~---~l~~L~~lL~~ 425 (532)
+.-|..+.. -.+...+.+... +...+...+.+.+..|...|+....| +++..|+..+ +++.+...|..
T Consensus 320 L~ElEEILe~iep~eFqk~~~P-Lf~qia~c~sS~HFQVAEraL~~wnN-------e~i~~Li~~n~~~ilPiiFpaLyr 391 (457)
T KOG2085|consen 320 LNELEEILEVIEPSEFQKIMVP-LFRQIARCVSSPHFQVAERALYLWNN-------EYIRSLISQNAEVILPIVFPALYR 391 (457)
T ss_pred HhhHHHHHHhcCHHHHHHHhHH-HHHHHHHHcCChhHHHHHHHHHHHhh-------HHHHHHHHhccceeeehhhHHHHH
Confidence 122222222 234434333322 45556666777888898888876543 4444444332 34444444431
Q ss_pred -----CCHHHHHHHHHHHHHHHHhh
Q 009568 426 -----PDPRIVTVCLEGLENILKVG 445 (532)
Q Consensus 426 -----~d~~v~~~al~~L~~l~~~~ 445 (532)
=+..+...++.++..++...
T Consensus 392 ~sk~hWN~~i~~l~~nvlk~f~emd 416 (457)
T KOG2085|consen 392 NSKSHWNQAIHNLILNVLKTFMEMD 416 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 13446666667777666554
No 379
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=50.03 E-value=1.1e+02 Score=29.70 Aligned_cols=77 Identities=27% Similarity=0.428 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhCC--ChHHHHHhhCCC---CHHHHHHHHHHHHHhhCCCchhHHHHH------hc
Q 009568 133 QLQFEAAWALTNIASGTSENTKVVIDHG--AVPIFVKLLASP---SDDVREQAVWALGNVAGDSPRCRDLVL------SQ 201 (532)
Q Consensus 133 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g--~i~~L~~lL~~~---~~~v~~~a~~~L~nl~~~~~~~~~~~~------~~ 201 (532)
.+|..|+.++..+.. .+.....++..+ ++..|+.++..+ ...++..|+.+|..++.+.....+.+. .+
T Consensus 237 ~iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~H 315 (329)
T PF06012_consen 237 QIRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSH 315 (329)
T ss_pred HHHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCc
Confidence 455555555555554 566777777776 889999998763 478999999999999987776655443 34
Q ss_pred CChHHHHHH
Q 009568 202 GALIPLLAQ 210 (532)
Q Consensus 202 ~~l~~L~~l 210 (532)
|++..+++.
T Consensus 316 GiL~~llR~ 324 (329)
T PF06012_consen 316 GILPQLLRK 324 (329)
T ss_pred ccHHHHHHH
Confidence 555555543
No 380
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=49.61 E-value=64 Score=31.43 Aligned_cols=73 Identities=15% Similarity=0.243 Sum_probs=58.2
Q ss_pred CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhc-CCCHHHHHHHHHH
Q 009568 414 GCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS-HDNNEIYEKAVKI 492 (532)
Q Consensus 414 ~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~-~~~~~v~~~a~~i 492 (532)
++++.+..-|...|+.|+..++..+..+...+.+. |...+..-.+...|..|.. +..+.|.++...+
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~------------~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~l 112 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKR------------FRLEVSSRDFTTELRALIESKAHPKVCEKMRDL 112 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchH------------HHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHH
Confidence 46888999999999999999999888887766543 4555666667777888877 7888999998888
Q ss_pred HHHhCC
Q 009568 493 LETYWL 498 (532)
Q Consensus 493 l~~~~~ 498 (532)
+.++-+
T Consensus 113 v~eWse 118 (462)
T KOG2199|consen 113 VKEWSE 118 (462)
T ss_pred HHHHHH
Confidence 887755
No 381
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.32 E-value=25 Score=33.62 Aligned_cols=63 Identities=8% Similarity=0.062 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCChhhHHHHHhCCChHHHHHh--hCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh
Q 009568 138 AAWALTNIASGTSENTKVVIDHGAVPIFVKL--LASPSDDVREQAVWALGNVAGDSPRCRDLVLS 200 (532)
Q Consensus 138 a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l--L~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 200 (532)
..+.+++++...++..+.+.+.|+++.++.- +++.+|-+++..+.++.++..++...++.+..
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 5668899999899999999999999988873 45578999999999999999888887776543
No 382
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.39 E-value=73 Score=32.41 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=54.0
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHH-hcC-CCHHHHHHHHHH
Q 009568 415 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENL-QSH-DNNEIYEKAVKI 492 (532)
Q Consensus 415 ~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L-~~~-~~~~v~~~a~~i 492 (532)
++..|..-+...++.+...||..|..+++.+... |...+.+.++++-+..+ .++ .+..|++++..+
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~------------fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~L 106 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYS------------FHLQVASKEFLNEMVKRPKNKPRDLKVREKILEL 106 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHH------------HHHHHHHHHHHHHHHhccccCCcchhHHHHHHHH
Confidence 4667777788888899999999888888766543 55566666666665554 566 788999999999
Q ss_pred HHHhCC
Q 009568 493 LETYWL 498 (532)
Q Consensus 493 l~~~~~ 498 (532)
|+.+..
T Consensus 107 I~~W~~ 112 (470)
T KOG1087|consen 107 IDTWQQ 112 (470)
T ss_pred HHHHHH
Confidence 998754
No 383
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=47.37 E-value=61 Score=24.18 Aligned_cols=66 Identities=11% Similarity=0.127 Sum_probs=43.1
Q ss_pred hhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh----cCchhHHHHHHHHH
Q 009568 325 ITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ----NAEFDIKKEAAWAI 395 (532)
Q Consensus 325 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~----~~~~~v~~~a~~aL 395 (532)
.+..++.++..++.+..+.++|.....++.++.....+.+ ..| .+.++..+. +++..+...|-.++
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i----~SG-W~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENI----KSG-WKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHH----Hhc-cHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 3446777888887665588999999999999987544433 444 455555543 33556666555544
No 384
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=47.22 E-value=94 Score=26.02 Aligned_cols=123 Identities=14% Similarity=0.099 Sum_probs=77.7
Q ss_pred ChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhC--CCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHH
Q 009568 149 TSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAG--DSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATW 225 (532)
Q Consensus 149 ~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~--~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~ 225 (532)
+++.-+.+++...+..+++++.. ....++.+.+..+.-+.. .++..-..+...+.+..++..--+-.++++...-+.
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 45677788888999999999887 566777777776665542 222222345566667777665445567788888888
Q ss_pred HhhhccCCCCCC--Ccccc--cchHH---HHHHhhcCCCHHHHHHHHHHHHHh
Q 009568 226 TLSNFCRGKPQP--PFDQV--RPALP---ALAQLVHSNDEEVLTDACWALSYL 271 (532)
Q Consensus 226 ~L~~L~~~~~~~--~~~~~--~~~l~---~L~~lL~~~d~~v~~~a~~~L~~l 271 (532)
.|..|+-.-... .+... .+-+| .-++++.++|.-++..+-..+.++
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 887777553211 11111 23344 445667788888887776655554
No 385
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=47.17 E-value=1.8e+02 Score=24.78 Aligned_cols=80 Identities=13% Similarity=0.150 Sum_probs=52.7
Q ss_pred HHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHH-HhcCCC-chhHHHHHHHHHHHHh
Q 009568 280 QAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG-LLTHSH-KKSIKKEACWTISNIT 357 (532)
Q Consensus 280 ~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~-lL~~~~-~~~v~~~a~~~L~nl~ 357 (532)
..+++..+++.+...+.++++.+...+++++..+........+.-++ -+++.++. ++.++. ...-|..+..++..++
T Consensus 67 ~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele-~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 67 INLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE-VFLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 44666688888888888877889999999999998543222211111 23444444 665542 2356677888999998
Q ss_pred cCC
Q 009568 358 AGN 360 (532)
Q Consensus 358 ~~~ 360 (532)
...
T Consensus 146 ~~p 148 (168)
T PF12783_consen 146 KDP 148 (168)
T ss_pred hCh
Confidence 753
No 386
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.11 E-value=4e+02 Score=30.21 Aligned_cols=135 Identities=8% Similarity=0.033 Sum_probs=85.0
Q ss_pred cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCH-HHHHHHHHcCCh
Q 009568 338 THSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH-EQIKYLVREGCI 416 (532)
Q Consensus 338 ~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~-~~~~~l~~~~~l 416 (532)
++- .+.+|..+.-.|+-.+..-|+ .+++...+..+-..|.+.+..||..++.+|..+...... ..+..+. ...=
T Consensus 297 RDV-~~~IRaiCiqeLgiWi~~yP~---~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFt-sRFK 371 (1048)
T KOG2011|consen 297 RDV-DPDIRAICIQELGIWIKSYPE---IFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFT-SRFK 371 (1048)
T ss_pred ccC-chHHHHHHHHHHHHHHHhccH---HHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHH-HHHH
Confidence 344 789999999999988875554 456666777777788888999999999999999875321 1222222 2234
Q ss_pred HHHHhhc-CCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009568 417 KPLCDLF-VCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILET 495 (532)
Q Consensus 417 ~~L~~lL-~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~ 495 (532)
..++++. .+.+..|+.+.+..+......+ .+. ..-+..+-.|..+.++.+...|...+-.
T Consensus 372 ~RIVeMadrd~~~~Vrav~L~~~~~~~~~g------------------~L~-d~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 372 DRIVEMADRDRNVSVRAVGLVLCLLLSSSG------------------LLS-DKDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHhccc------------------ccC-hhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 4555555 3344455544443332221111 111 2225678888999999999888766654
Q ss_pred h
Q 009568 496 Y 496 (532)
Q Consensus 496 ~ 496 (532)
-
T Consensus 433 k 433 (1048)
T KOG2011|consen 433 K 433 (1048)
T ss_pred H
Confidence 3
No 387
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=46.99 E-value=61 Score=26.16 Aligned_cols=95 Identities=21% Similarity=0.204 Sum_probs=56.9
Q ss_pred chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhc---CCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchH
Q 009568 384 EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLF---VCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQ 460 (532)
Q Consensus 384 ~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL---~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~ 460 (532)
+...-...+.-|+..+... ..+.. ++..|..-| +.+++.++..+|..|..|+..|...
T Consensus 16 ~~gp~~~~l~eIa~~t~~~--~~~~~-----I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~------------ 76 (125)
T PF01417_consen 16 PWGPPGKLLAEIAQLTYNS--KDCQE-----IMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSER------------ 76 (125)
T ss_dssp SSS--HHHHHHHHHHTTSC--HHHHH-----HHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HH------------
T ss_pred CCCcCHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHH------------
Confidence 3344455556666666642 33333 455666666 5677889999999999999987653
Q ss_pred HHHHHHHhccHHHHHHHh---c------CCCHHHHHHHHHHHHHhCCC
Q 009568 461 YAQLVEEAEGLEKIENLQ---S------HDNNEIYEKAVKILETYWLE 499 (532)
Q Consensus 461 ~~~~~~~~g~~~~l~~L~---~------~~~~~v~~~a~~il~~~~~~ 499 (532)
|...+. .....|..|. . +....|+++|..+++-..++
T Consensus 77 ~~~~~~--~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d~ 122 (125)
T PF01417_consen 77 FVDELR--DHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLNDD 122 (125)
T ss_dssp HHHHHH--HTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTSH
T ss_pred HHHHHH--HHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCCc
Confidence 333332 1234444442 2 11235999999999877553
No 388
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.86 E-value=5.5e+02 Score=30.23 Aligned_cols=254 Identities=13% Similarity=0.157 Sum_probs=124.7
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHH----HHHhhcCCCCHHHHHHHHHHHHHHhcCCh
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPR----FVEFLMREDYPQLQFEAAWALTNIASGTS 150 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~----Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~ 150 (532)
.+..+++.|..-|+..+..|+..|..+....+.+... |++|. +.+++.+++ ..+|..+-.++..+...-.
T Consensus 42 el~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~-----~il~~w~~i~~kl~~d~~-~~VR~~t~~v~s~l~t~lk 115 (1312)
T KOG0803|consen 42 ELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELK-----GILPEWLVIYAKLIIDED-RTVRLLTHDVFSKLLTKLK 115 (1312)
T ss_pred HHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHh-----hhHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999998753222221 23433 234555666 8999999999988876322
Q ss_pred hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh--cCChHHHHHHhh----------------
Q 009568 151 ENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS--QGALIPLLAQLN---------------- 212 (532)
Q Consensus 151 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~--~~~l~~L~~ll~---------------- 212 (532)
......++ ..++..+-.-.+.+..+...|...+..... ....+..... ..+...+.+.+.
T Consensus 116 k~lsp~LK-~li~~wl~~~~d~~~~vs~aa~~sf~~~f~-~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~E 193 (1312)
T KOG0803|consen 116 KKLSPFLK-SLIPPWLGGQFDLDYPVSEAAKASFKDGFA-EEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSE 193 (1312)
T ss_pred HHhhHHHH-hhhhhhhheecccchHHHHHHHHHHHhhcC-hhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchH
Confidence 22122221 233333333333455555555555555432 1111222111 111111112210
Q ss_pred --hhhhhHHHHHHHHHhhhccCCC-CCCCcc----cccchH--HHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHH
Q 009568 213 --ERAKLSMLRNATWTLSNFCRGK-PQPPFD----QVRPAL--PALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVI 283 (532)
Q Consensus 213 --~~~~~~~~~~a~~~L~~L~~~~-~~~~~~----~~~~~l--~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~ 283 (532)
......+...++-++..+.... +..... ..+..+ ..+-+++.+..+.+......++..++..-.... .-.
T Consensus 194 e~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~-~~~ 272 (1312)
T KOG0803|consen 194 ELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRV-MES 272 (1312)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhc-chh
Confidence 0112234445555555544322 111111 111111 245566777888888888888888775533321 111
Q ss_pred HhCchHHHHHh-hCCCCccchhhHHHHHHHhhc-CCcchhHH--HhhcCchHHHHHHhc
Q 009568 284 EAGVCPRLVEL-LGHPSPSVLIPALRTVGNIVT-GDDFQTQC--IITYGALPYLLGLLT 338 (532)
Q Consensus 284 ~~~~l~~L~~l-L~~~~~~v~~~al~~L~nl~~-~~~~~~~~--~~~~~~l~~L~~lL~ 338 (532)
+...+...+.. ..+.+ .+......++.+... ..+..... ....+++|.+..++.
T Consensus 273 ~~~~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir 330 (1312)
T KOG0803|consen 273 EKNYLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR 330 (1312)
T ss_pred hhhHhhHHHHccccccc-cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence 22333333332 23333 333344444442222 22211111 144577788777776
No 389
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=46.49 E-value=3.1e+02 Score=28.41 Aligned_cols=99 Identities=11% Similarity=0.042 Sum_probs=65.6
Q ss_pred hhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc----------CCCHHHHHHHHHHHHHhccCChhHHHHHHH
Q 009568 215 AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH----------SNDEEVLTDACWALSYLSDGTNDKIQAVIE 284 (532)
Q Consensus 215 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~----------~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~ 284 (532)
.+..++.++...++.|..++...-..+...++|.++.++- ++...++.-|+..+..++......... +.
T Consensus 259 ~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~ 337 (576)
T KOG2549|consen 259 NNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQ 337 (576)
T ss_pred ccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HH
Confidence 4667778888888888888655555566788888777663 224567888888888888765555443 55
Q ss_pred hCchHHHHHhhCCC--CccchhhHHHHHHHhh
Q 009568 285 AGVCPRLVELLGHP--SPSVLIPALRTVGNIV 314 (532)
Q Consensus 285 ~~~l~~L~~lL~~~--~~~v~~~al~~L~nl~ 314 (532)
..++..+...+.++ ......-++..|..+.
T Consensus 338 ~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg 369 (576)
T KOG2549|consen 338 PRITRTLSKALLDNKKPLSTHYGAIAGLSELG 369 (576)
T ss_pred HHHHHHHHHHhcCCCCCchhhhhHHHHHHHhh
Confidence 56777777777664 3344454555554443
No 390
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=45.80 E-value=2.7e+02 Score=26.35 Aligned_cols=133 Identities=11% Similarity=0.142 Sum_probs=66.3
Q ss_pred cCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC------CCccchhhHHHHHHHhhcCCcchhHHHhhc
Q 009568 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH------PSPSVLIPALRTVGNIVTGDDFQTQCIITY 327 (532)
Q Consensus 254 ~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~ 327 (532)
...+.+.+..|+.+|.+=+ -.+ .++|.++.++.. .+.......+.....+.....-..+..+.
T Consensus 208 dEs~~~~r~aAl~sLr~ds-----Glh-----QLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~h- 276 (450)
T COG5095 208 DESDEQTRDAALESLRNDS-----GLH-----QLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLH- 276 (450)
T ss_pred HHHHHHHHHHHHHHhccCc-----cHH-----HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHH-
Confidence 3445666666666665411 111 345666666543 23344444555555555544323332222
Q ss_pred CchHHHHHHhc-----CC-C---chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH-HHhcC-chhHHHHHHHHHH
Q 009568 328 GALPYLLGLLT-----HS-H---KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN-LLQNA-EFDIKKEAAWAIS 396 (532)
Q Consensus 328 ~~l~~L~~lL~-----~~-~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~-ll~~~-~~~v~~~a~~aL~ 396 (532)
.++|.++.++- +. . .-.+|.-|+..+..++...+..... ++..+...+.. +|+.. ....+--|+.++.
T Consensus 277 qlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~Ykt-LkPRvtrTllKafLD~~k~~sT~YGalkgls 355 (450)
T COG5095 277 QLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKT-LKPRVTRTLLKAFLDREKTESTQYGALKGLS 355 (450)
T ss_pred HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhh-hchHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 56666666652 11 0 1248888888888887643332222 22223333333 33333 3456666666666
Q ss_pred Hh
Q 009568 397 NA 398 (532)
Q Consensus 397 nl 398 (532)
-+
T Consensus 356 ~l 357 (450)
T COG5095 356 IL 357 (450)
T ss_pred hh
Confidence 55
No 391
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=44.37 E-value=42 Score=18.86 Aligned_cols=19 Identities=16% Similarity=0.641 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHhcCCHHHH
Q 009568 344 SIKKEACWTISNITAGNRDQI 364 (532)
Q Consensus 344 ~v~~~a~~~L~nl~~~~~~~~ 364 (532)
.+|..|+++|+++ +++..+
T Consensus 2 ~vR~~aa~aLg~~--~~~~a~ 20 (30)
T smart00567 2 LVRHEAAFALGQL--GDEEAV 20 (30)
T ss_pred HHHHHHHHHHHHc--CCHhHH
Confidence 5899999999998 345433
No 392
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=42.65 E-value=58 Score=27.15 Aligned_cols=29 Identities=34% Similarity=0.531 Sum_probs=19.9
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568 416 IKPLCDLFVCPDPRIVTVCLEGLENILKV 444 (532)
Q Consensus 416 l~~L~~lL~~~d~~v~~~al~~L~~l~~~ 444 (532)
+..|+++|.++|+.+...+.++|.+.+-.
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~TlLv 124 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTLLV 124 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--TT
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhHHH
Confidence 77888888888888888888888877654
No 393
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=42.56 E-value=2.3e+02 Score=31.98 Aligned_cols=98 Identities=9% Similarity=0.164 Sum_probs=66.5
Q ss_pred HhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccch
Q 009568 380 LQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVN 459 (532)
Q Consensus 380 l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~ 459 (532)
..+-++++|..++..|+-.+..-+ .++++...++.+-=.|.+.+..|+..++.+|..++...+... ...
T Consensus 296 YRDV~~~IRaiCiqeLgiWi~~yP----~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~-------~L~ 364 (1048)
T KOG2011|consen 296 YRDVDPDIRAICIQELGIWIKSYP----EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKD-------KLE 364 (1048)
T ss_pred cccCchHHHHHHHHHHHHHHHhcc----HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccch-------HHH
Confidence 344578999999999988876422 344555567777777889999999999999999998743322 345
Q ss_pred HHHHHHHHhccHHHHHHHh-cCCCHHHHHHHHHHH
Q 009568 460 QYAQLVEEAEGLEKIENLQ-SHDNNEIYEKAVKIL 493 (532)
Q Consensus 460 ~~~~~~~~~g~~~~l~~L~-~~~~~~v~~~a~~il 493 (532)
.|...|. ++|.++. ..-+..|..-+..+.
T Consensus 365 lFtsRFK-----~RIVeMadrd~~~~Vrav~L~~~ 394 (1048)
T KOG2011|consen 365 LFTSRFK-----DRIVEMADRDRNVSVRAVGLVLC 394 (1048)
T ss_pred HHHHHHH-----HHHHHHHhhhcchhHHHHHHHHH
Confidence 5666665 5555554 555555555554433
No 394
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.46 E-value=1.4e+02 Score=30.46 Aligned_cols=71 Identities=10% Similarity=0.002 Sum_probs=55.8
Q ss_pred CHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCC--CHHHHHHHHHHHHHHH
Q 009568 372 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP--DPRIVTVCLEGLENIL 442 (532)
Q Consensus 372 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~--d~~v~~~al~~L~~l~ 442 (532)
++..|.+.+.+..+.++..|+..|-.|+.++...+-..+.+.+++.-++.+.+.. +..|+..+|..|...-
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQ 111 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHH
Confidence 4556677788888899999999888888877767666778889999988888754 6788888888776553
No 395
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=42.32 E-value=4e+02 Score=27.40 Aligned_cols=209 Identities=14% Similarity=0.109 Sum_probs=104.5
Q ss_pred ChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC---------CCCCcc--cccchHHHHHHhhc----CCC----HHHHHH
Q 009568 203 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGK---------PQPPFD--QVRPALPALAQLVH----SND----EEVLTD 263 (532)
Q Consensus 203 ~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~---------~~~~~~--~~~~~l~~L~~lL~----~~d----~~v~~~ 263 (532)
++..+.+++..+....++.++.|.|..|--.. -..++. -...++...+.++- ... +....-
T Consensus 98 vir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvkv 177 (589)
T PF11229_consen 98 VIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVKV 177 (589)
T ss_pred HHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHHH
Confidence 56677777766777888889999888663211 111111 22455555555553 222 233333
Q ss_pred HHHHHHHhcc---CChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCC
Q 009568 264 ACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS 340 (532)
Q Consensus 264 a~~~L~~l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~ 340 (532)
++.-+..... .++-+-. -++.+|+.+ +-..+++..++.+...=+..+. ....++..=+.|.++.-|+.
T Consensus 178 vl~~ia~vgeS~qyPPVNWa-----alLsPLMRl--nfGeEvq~lCLeiAvtQaqSSq-sAa~fLg~WlsPpli~sLs~- 248 (589)
T PF11229_consen 178 VLKPIATVGESYQYPPVNWA-----ALLSPLMRL--NFGEEVQQLCLEIAVTQAQSSQ-SAAMFLGSWLSPPLIHSLSV- 248 (589)
T ss_pred HHHHhhhcCCCCCCCCccHH-----HHhhHHHhc--cccHHHHHHHHHHHHHhccccc-cHHHHHHhhcCcchhhhhhH-
Confidence 3333333221 1222222 233344443 2245677777665544443332 33345555555666655543
Q ss_pred CchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHH
Q 009568 341 HKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPL 419 (532)
Q Consensus 341 ~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L 419 (532)
..++..+..+.-... -.+++++.+++.-++..+-..-...++++...++..|.......+|.+--+-.=+.....+
T Consensus 249 ---~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~P~~h~Ws~Lc~ttekI 325 (589)
T PF11229_consen 249 ---NTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLPSPAQHCWSLLCETTEKI 325 (589)
T ss_pred ---HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH
Confidence 466666666666555 3566667666532222221111124677777787777775554443322211112345555
Q ss_pred Hhhc
Q 009568 420 CDLF 423 (532)
Q Consensus 420 ~~lL 423 (532)
.++|
T Consensus 326 F~lL 329 (589)
T PF11229_consen 326 FDLL 329 (589)
T ss_pred HHhC
Confidence 5555
No 396
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=41.29 E-value=1.8e+02 Score=22.94 Aligned_cols=70 Identities=7% Similarity=-0.010 Sum_probs=51.2
Q ss_pred CHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhh-----c-CCCCHHHHHHHHHHHHHH
Q 009568 372 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDL-----F-VCPDPRIVTVCLEGLENI 441 (532)
Q Consensus 372 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~l-----L-~~~d~~v~~~al~~L~~l 441 (532)
++..|..-|.+.++.++..|+..|-.++.+++......+.....+..++.. . ...+..|+..++..+...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 445666777788999999999999999999988888877776666555442 1 123567888877766543
No 397
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=40.96 E-value=1.2e+02 Score=30.96 Aligned_cols=78 Identities=19% Similarity=0.278 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh
Q 009568 89 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL 168 (532)
Q Consensus 89 ~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 168 (532)
..+..|+++|..+++.-..+....+.+ +.|+..|++.. ..-|..|+.++...+...........-..+.+.|...
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~s-a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPS-ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchh-HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 457789999999988642333333222 26889999887 6677778888888876332211110001234666666
Q ss_pred hCC
Q 009568 169 LAS 171 (532)
Q Consensus 169 L~~ 171 (532)
|..
T Consensus 177 L~~ 179 (441)
T PF12054_consen 177 LEN 179 (441)
T ss_pred HcC
Confidence 664
No 398
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=40.93 E-value=1.8e+02 Score=23.09 Aligned_cols=67 Identities=21% Similarity=0.249 Sum_probs=42.9
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhCCCCHHH-HHHHHHHHHHhhCC
Q 009568 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSDDV-REQAVWALGNVAGD 190 (532)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v-~~~a~~~L~nl~~~ 190 (532)
++|.+.+.|.....++.+..+..+++.++...+ -.+.+ +..++. ++.+....- ...++.+|..++..
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-L~~~~-----l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-LSDEV-----LNALMESILKNWTQETVQRQALICLIVLCQS 75 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-CcHHH-----HHHHHHHHHhccccchhHHHHHHHHHHHHHc
Confidence 688889999944448999999999999998332 22222 333343 223222222 47788888888743
No 399
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=39.50 E-value=23 Score=22.23 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=26.7
Q ss_pred HHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHH
Q 009568 309 TVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWT 352 (532)
Q Consensus 309 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 352 (532)
+|+.++..++.. +-...+...+...|.++ ++.||+.|..+
T Consensus 2 ~l~~iv~~dp~l---l~~~~v~~~i~~rl~D~-s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTL---LDSSDVQSAIIRRLSDS-SPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccc---cchHHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 456666655422 22235667788888888 89999988754
No 400
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=39.39 E-value=7.3e+02 Score=32.43 Aligned_cols=298 Identities=9% Similarity=0.055 Sum_probs=135.2
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCC------CCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIE------RSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG 148 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~------~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~ 148 (532)
.++.++..+...+.+....+..++..+.... .......-+-.++++.++++..++. -.-+...+-.|..+...
T Consensus 985 ~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~-wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen 985 FLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDST-WYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHh-HHHHcCCCceeeeehhh
Confidence 5788888888888877777777777665431 0111111122345555555554443 12232222233333332
Q ss_pred ChhhHHHHHh--CCChHHHHHhhCC-----CC--HHHHHHHHH-HHHHhhC--CCchhHHHHHhcCChHHHHHHhhhhhh
Q 009568 149 TSENTKVVID--HGAVPIFVKLLAS-----PS--DDVREQAVW-ALGNVAG--DSPRCRDLVLSQGALIPLLAQLNERAK 216 (532)
Q Consensus 149 ~~~~~~~i~~--~g~i~~L~~lL~~-----~~--~~v~~~a~~-~L~nl~~--~~~~~~~~~~~~~~l~~L~~ll~~~~~ 216 (532)
.+ ...+.+ ..++..+...|.. ++ .+.....+. .+..+.. ..+..+... ..+++.+++.-+ .+++
T Consensus 1064 ~~--~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-~~~~~~~lv~eL-~npN 1139 (3550)
T KOG0889|consen 1064 MP--SLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKS-AMNVFSPLVLEL-FNPN 1139 (3550)
T ss_pred ch--HHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHH-cCCc
Confidence 22 111111 1334444444433 11 112222222 2222211 111222222 234666777777 5667
Q ss_pred hHHHHHHHHHhhhccCCCCCCCcccccchHHH-----HHHhhcCCCHHHHHHHHHHHHHhccCCh-------hHHHHHHH
Q 009568 217 LSMLRNATWTLSNFCRGKPQPPFDQVRPALPA-----LAQLVHSNDEEVLTDACWALSYLSDGTN-------DKIQAVIE 284 (532)
Q Consensus 217 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~-----L~~lL~~~d~~v~~~a~~~L~~l~~~~~-------~~~~~~~~ 284 (532)
..++..+..+|.+++............+.-.. ..+-+....-.++.-.+.++.++....+ +.......
T Consensus 1140 ~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~ 1219 (3550)
T KOG0889|consen 1140 SDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRF 1219 (3550)
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHH
Confidence 78888888888888776421111111111111 1111222222233333333333222111 11110000
Q ss_pred h---------CchHHHHHhhCCC----CccchhhHHHHHHHhhcCCcchh--HHHhhcCchHHHHHHhcCCCchhHHHHH
Q 009568 285 A---------GVCPRLVELLGHP----SPSVLIPALRTVGNIVTGDDFQT--QCIITYGALPYLLGLLTHSHKKSIKKEA 349 (532)
Q Consensus 285 ~---------~~l~~L~~lL~~~----~~~v~~~al~~L~nl~~~~~~~~--~~~~~~~~l~~L~~lL~~~~~~~v~~~a 349 (532)
. ..+- +....... ....+..++.+++......+... ..-...+++..+.+.|... .+++...+
T Consensus 1220 ~~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~-~~Ei~~~~ 1297 (3550)
T KOG0889|consen 1220 LIALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKR-SSELIEVA 1297 (3550)
T ss_pred HHHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCC-hHHHHHHH
Confidence 0 0000 11111111 12346677777777665554322 2223457788888888887 88899888
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCCHHHHHHH
Q 009568 350 CWTISNITAGNRDQIQAVIDAGLVGPLVNL 379 (532)
Q Consensus 350 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l 379 (532)
..++......++..-...++.+.=|.|..+
T Consensus 1298 ~~~l~~v~~~~~~~~ke~lq~~lrplL~~l 1327 (3550)
T KOG0889|consen 1298 LEGLRKVLAQDVKLPKELLQSHLRPLLMNL 1327 (3550)
T ss_pred HHHHHhhhhccccccHHHHHhhHHHHHHhh
Confidence 888888877644444444444333444443
No 401
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=39.04 E-value=97 Score=27.59 Aligned_cols=96 Identities=11% Similarity=0.146 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhc
Q 009568 344 SIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLF 423 (532)
Q Consensus 344 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL 423 (532)
.+-..++..|..++.++.+....+.+. ++.++..+.......-..+..++..+..+ +++.+..+.+. .+..+++++
T Consensus 76 ~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~d-N~~L~~~i~e~-~I~~~i~ll 151 (207)
T PF01365_consen 76 ELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRD-NPELCESISEE-HIEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT----------------------
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHC-cHHHHHHhhHH-HHHHHHHHH
Confidence 566788899999999988777666653 33333333322211223466677777765 44555554443 488888888
Q ss_pred CCCCHHHHHHHHHHHHHHHHhh
Q 009568 424 VCPDPRIVTVCLEGLENILKVG 445 (532)
Q Consensus 424 ~~~d~~v~~~al~~L~~l~~~~ 445 (532)
.....+ ...++.|..++..+
T Consensus 152 ~~~gr~--~~~L~~L~~lc~~~ 171 (207)
T PF01365_consen 152 RKHGRQ--PRYLDFLSSLCVCN 171 (207)
T ss_dssp ----------------------
T ss_pred HHcCCC--hHHHHHHhhhcccC
Confidence 763322 23566666666544
No 402
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.69 E-value=1.5e+02 Score=32.82 Aligned_cols=94 Identities=15% Similarity=0.026 Sum_probs=69.6
Q ss_pred CchHHHHHHhcCCCchhHHHHHHHHHHHH---hcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCH
Q 009568 328 GALPYLLGLLTHSHKKSIKKEACWTISNI---TAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH 404 (532)
Q Consensus 328 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl---~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~ 404 (532)
.++.....+|++. +..+|..|..+++.. .+..++..-+++.. ..|.++..+..+++-+...|..+|.++...+..
T Consensus 803 kIl~r~~~~LS~e-~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq-~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 803 KILGRGIHLLSHE-SLRIRVKALDVLSLGLPLLATYHNLLLPLVHQ-TWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHhcch-hHHHHHHHHHHHHhccHHHhccchhHhHHHHh-hhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhh
Confidence 4566777888888 889999999888753 33445555556654 789999999999999999999999999987665
Q ss_pred HHHHHHHHcCChHHHHhhcC
Q 009568 405 EQIKYLVREGCIKPLCDLFV 424 (532)
Q Consensus 405 ~~~~~l~~~~~l~~L~~lL~ 424 (532)
....++++ +++|.+-.++.
T Consensus 881 Fv~sR~l~-dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 881 FVASRFLE-DVLPWLKHLCQ 899 (1014)
T ss_pred HHHHHHHH-HHHHHHHHHHH
Confidence 55555444 46666655443
No 403
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=38.63 E-value=47 Score=31.62 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=43.7
Q ss_pred HhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC--------------hhhHHHHHhCCChHHHHHhhC
Q 009568 112 EVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT--------------SENTKVVIDHGAVPIFVKLLA 170 (532)
Q Consensus 112 ~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~--------------~~~~~~i~~~g~i~~L~~lL~ 170 (532)
...+...+..+++-|...+ ...+..|+.+|..++.|. ..+...+.+.|+++.|..+|.
T Consensus 55 ~~~~~~~i~~ll~~L~~~~-~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 55 FDQRKDFIEKLLDQLESSD-SEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred hhhHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3445567888999999887 889999999999999875 234445566777777777774
No 404
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=37.45 E-value=1.6e+02 Score=28.63 Aligned_cols=59 Identities=22% Similarity=0.357 Sum_probs=40.5
Q ss_pred chhHhhhCC--cHHHHHHhhcCCC--CHHHHHHHHHHHHHHhcCChhhHHHHH------hCCChHHHHH
Q 009568 109 PIEEVIQSG--VVPRFVEFLMRED--YPQLQFEAAWALTNIASGTSENTKVVI------DHGAVPIFVK 167 (532)
Q Consensus 109 ~~~~~i~~g--~i~~Lv~lL~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~i~------~~g~i~~L~~ 167 (532)
....+...+ ++..|++++..++ ...+|..|+.+|..++.......+.+- .+|+++.+++
T Consensus 255 ~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGiL~~llR 323 (329)
T PF06012_consen 255 FSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGILPQLLR 323 (329)
T ss_pred HHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcccHHHHHH
Confidence 345555555 9999999998654 368999999999999985554444332 2455555554
No 405
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=37.36 E-value=3.3e+02 Score=26.05 Aligned_cols=83 Identities=16% Similarity=0.205 Sum_probs=62.3
Q ss_pred hCchHHHHHhhCC--CCccchhhHHHHHHHhhcCCcc-hh-HHHhhcCchHHHHHHhcCCC--chhHHHHHHHHHHHHhc
Q 009568 285 AGVCPRLVELLGH--PSPSVLIPALRTVGNIVTGDDF-QT-QCIITYGALPYLLGLLTHSH--KKSIKKEACWTISNITA 358 (532)
Q Consensus 285 ~~~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~-~~-~~~~~~~~l~~L~~lL~~~~--~~~v~~~a~~~L~nl~~ 358 (532)
.|.+..++..+.. .+...+..-..|+-.+..+... .. ..+.+.|+++.++..+-++. +..+...+.-.||-+..
T Consensus 94 ~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK 173 (303)
T PF12463_consen 94 KGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIK 173 (303)
T ss_pred ccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHC
Confidence 4677777777754 3566788888999999988876 23 36678899999998886552 23588888999999999
Q ss_pred CCHHHHHHH
Q 009568 359 GNRDQIQAV 367 (532)
Q Consensus 359 ~~~~~~~~l 367 (532)
++......+
T Consensus 174 ~n~~~f~~l 182 (303)
T PF12463_consen 174 FNRDAFQRL 182 (303)
T ss_pred CCHHHHHHH
Confidence 887755444
No 406
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=36.92 E-value=1.8e+02 Score=24.11 Aligned_cols=81 Identities=15% Similarity=0.123 Sum_probs=45.1
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcc
Q 009568 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240 (532)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 240 (532)
.-..+..+|.+++.+++..|+.||...- .+.. .. .-..|..++. ....+.-+..+. +..+.......
T Consensus 18 l~~~~~~LL~~~d~~vQklAL~cll~~k--~~~l----~p--Y~d~L~~Lld----d~~frdeL~~f~-~~~~~~~I~~e 84 (141)
T PF07539_consen 18 LYDALLRLLSSRDPEVQKLALDCLLTWK--DPYL----TP--YKDNLENLLD----DKTFRDELTTFN-LSDESSVIEEE 84 (141)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC--cHHH----Hh--HHHHHHHHcC----cchHHHHHHhhc-ccCCcCCCCHH
Confidence 3467788999999999999999998752 1111 11 1233444552 222222222221 22222234444
Q ss_pred cccchHHHHHHhhc
Q 009568 241 QVRPALPALAQLVH 254 (532)
Q Consensus 241 ~~~~~l~~L~~lL~ 254 (532)
....++|.++++|.
T Consensus 85 hR~~l~pvvlRILy 98 (141)
T PF07539_consen 85 HRPELMPVVLRILY 98 (141)
T ss_pred HHhHHHHHHHHHHH
Confidence 55778888888773
No 407
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=36.70 E-value=84 Score=22.39 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=42.8
Q ss_pred HHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchH
Q 009568 222 NATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 289 (532)
Q Consensus 222 ~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 289 (532)
..+|+.+.|--. |.........+...+..-+..-++....+++|.++.+-..+.+.++.+.+..++.
T Consensus 3 ~il~~fa~LNy~-P~~~~~f~~~~~~~L~~~l~~~~p~~ll~~v~Sl~~l~~~p~~~l~~vf~~~Fl~ 69 (71)
T PF06743_consen 3 SILLPFARLNYQ-PPNAEEFFEKLIERLESYLDEFSPEDLLDLVWSLCLLQRFPEDLLNKVFSPDFLQ 69 (71)
T ss_pred HHHHHHHhcCCC-CCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhCCHHHHHHHcCHHHHh
Confidence 345556555533 3222233344555555666666789999999999998888777777776655443
No 408
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=36.65 E-value=4.3e+02 Score=26.13 Aligned_cols=53 Identities=11% Similarity=0.004 Sum_probs=36.9
Q ss_pred cchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 009568 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359 (532)
Q Consensus 301 ~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 359 (532)
.-..-|...|.+.....++..... +..-+.+..+. +..+|+.|..-|--+|.+
T Consensus 39 k~k~lasq~ip~~fk~fp~la~~a-----~da~~d~~ed~-d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 39 KEKRLASQFIPRFFKHFPSLADEA-----IDAQLDLCEDD-DVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred HHHHHHHHHHHHHHhhCchhhhHH-----HHhhhcccccc-chhhHHHHHhccchhccC
Confidence 344556677777777666554433 34556666777 888999999998888876
No 409
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=36.65 E-value=2.2e+02 Score=22.67 Aligned_cols=65 Identities=14% Similarity=0.169 Sum_probs=42.4
Q ss_pred chHHHHHhhC-CCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHh-cCCCchhH-HHHHHHHHHHHhc
Q 009568 287 VCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLL-THSHKKSI-KKEACWTISNITA 358 (532)
Q Consensus 287 ~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~~v-~~~a~~~L~nl~~ 358 (532)
++|.+...|. +..++.+..+..+++.++...+ ... .++..++..+ .+. ...- .+.+..++..++.
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-L~~-----~~l~~l~~~i~~~~-~~~~~~~~~l~~L~~l~q 74 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-LSD-----EVLNALMESILKNW-TQETVQRQALICLIVLCQ 74 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-CcH-----HHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHH
Confidence 5677777777 6678899999999999997554 222 3333444333 333 3322 4788888888875
No 410
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=35.81 E-value=54 Score=18.10 Aligned_cols=14 Identities=14% Similarity=0.404 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhc
Q 009568 345 IKKEACWTISNITA 358 (532)
Q Consensus 345 v~~~a~~~L~nl~~ 358 (532)
||..|+++|+++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 68899999999853
No 411
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=35.59 E-value=2.9e+02 Score=23.79 Aligned_cols=156 Identities=11% Similarity=0.117 Sum_probs=84.6
Q ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHH
Q 009568 330 LPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKY 409 (532)
Q Consensus 330 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 409 (532)
=|.|+..|... .++......|+.+...-...+ ...+.|..+-|.+.+.+....-...|......+...-..+.+..
T Consensus 5 kplLIsCL~~q---~~k~s~~KiL~~iVs~Va~~v-~~~~~~~W~eL~d~Ils~~~~e~~kA~~IF~~L~~~l~~efl~~ 80 (174)
T PF04510_consen 5 KPLLISCLTMQ---ETKESDFKILRRIVSHVAYEV-FDLQEGGWDELSDCILSLSENEPVKAFHIFICLPMPLYGEFLIP 80 (174)
T ss_pred HHHHHHHHHhh---cccHhHHHHHHHHHHHHHHHH-HhcCCCCchhHHHHHHHhhccchHHHHHHHHhCCchhhhhHHHH
Confidence 36677777644 233444444444443211111 11255667777777766433334677777777774334456555
Q ss_pred HHHcCChHHHHhhcCCCC-HHHHHH--HH-HHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCH-H
Q 009568 410 LVREGCIKPLCDLFVCPD-PRIVTV--CL-EGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNN-E 484 (532)
Q Consensus 410 l~~~~~l~~L~~lL~~~d-~~v~~~--al-~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~-~ 484 (532)
+.+. +++.+...|..+. .++-.. |+ .++...++.-+... ....+...+.. .++.+.++.+.+.+ .
T Consensus 81 ~~~~-L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~-------~~~~vk~L~~~--mv~Sv~elV~~g~E~~ 150 (174)
T PF04510_consen 81 FMEN-LLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSM-------RVDLVKELLPK--MVKSVKELVERGMEVG 150 (174)
T ss_pred HHHH-HHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhcccc-------HHHHHHHHHHH--HHHHHHHHHHcccHHH
Confidence 5554 7777777776652 233222 22 33343444333221 11222333222 46778888888888 8
Q ss_pred HHHHHHHHHHHhCCC
Q 009568 485 IYEKAVKILETYWLE 499 (532)
Q Consensus 485 v~~~a~~il~~~~~~ 499 (532)
.-.+|..-+++|+..
T Consensus 151 ~l~rgl~~~e~~v~~ 165 (174)
T PF04510_consen 151 FLRRGLRDFESFVSR 165 (174)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888887754
No 412
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=34.81 E-value=1.1e+02 Score=24.29 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=0.0
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh
Q 009568 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL 168 (532)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 168 (532)
+|+.|+.-|.+++ +++...|+.+|...+... .....++... |.|..+
T Consensus 9 ~i~lLv~QL~D~~-~~V~~~A~~iL~e~c~~~-~~le~~v~~~--p~l~~L 55 (115)
T PF14663_consen 9 GIELLVTQLYDPS-PEVVAAALEILEEACEDK-EYLEYLVSLR--PSLDHL 55 (115)
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHhch-hhHHHHHHcC--cHHHHH
No 413
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=34.14 E-value=1.7e+02 Score=22.91 Aligned_cols=68 Identities=15% Similarity=0.159 Sum_probs=44.3
Q ss_pred CcHHHHHHhhcCCC---CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhC
Q 009568 117 GVVPRFVEFLMRED---YPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAG 189 (532)
Q Consensus 117 g~i~~Lv~lL~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~ 189 (532)
|++..+.+.+.+.+ ...-+..++.++..+....... +. .+.|.+...|++ ..++++..|+.+...+..
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~---i~--~a~pQI~acL~saL~~~eL~~~al~~W~~~i~ 83 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKH---IS--SALPQIMACLQSALEIPELRSLALRCWHVLIK 83 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 56666766666543 3466888888887776522222 21 345677777766 677899999988887753
No 414
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=34.09 E-value=2.7e+02 Score=23.04 Aligned_cols=104 Identities=13% Similarity=0.186 Sum_probs=64.5
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCC
Q 009568 375 PLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTA 454 (532)
Q Consensus 375 ~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~ 454 (532)
.+++-|......+++.|.+||-+ ... +..+.+.+++-|+.++-..+...+..+..++......+.
T Consensus 12 ~~L~~L~aS~qSi~kaa~fAlk~--~~~---------~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~---- 76 (139)
T PF12243_consen 12 QLLRRLNASQQSIQKAAQFALKN--RDM---------EEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKK---- 76 (139)
T ss_pred HHHHHcchhHHHHHHHHHHHHHc--ccc---------HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhccc----
Confidence 34455555666788889999888 221 123567778888888888888888888888777665431
Q ss_pred CccchHHHHHHHHhccHHHHHHHhcCCCH--HHHHHHHHHHHHh
Q 009568 455 TADVNQYAQLVEEAEGLEKIENLQSHDNN--EIYEKAVKILETY 496 (532)
Q Consensus 455 ~~~~~~~~~~~~~~g~~~~l~~L~~~~~~--~v~~~a~~il~~~ 496 (532)
...+|...+. ......+....-.++. .-...+.++|..+
T Consensus 77 --~~~~Yv~~l~-~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~ 117 (139)
T PF12243_consen 77 --YNYPYVSMLQ-RDLPRIVDAVAPPDNSGAANLKSVRKVLKNW 117 (139)
T ss_pred --ccchhHHHHH-HHHHHHHHHhCCCCCccchHHHHHHHHHHHH
Confidence 2455777775 4444555544444333 2334455555543
No 415
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=34.08 E-value=4e+02 Score=27.49 Aligned_cols=62 Identities=16% Similarity=0.104 Sum_probs=37.0
Q ss_pred CHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHH
Q 009568 372 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLE 439 (532)
Q Consensus 372 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~ 439 (532)
++-.+.+-+...|..+...+..+++.++.. .....++ +++.|.-+|..+..+-+.+|+..+.
T Consensus 239 Lilqf~r~f~RnDk~~c~~~~kfiahLinq---~VahEIv---~Leil~lLLe~PTddSvevaI~flk 300 (739)
T KOG2140|consen 239 LILQFKRSFRRNDKVSCLNASKFIAHLINQ---QVAHEIV---ALEILTLLLERPTDDSVEVAIAFLK 300 (739)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHhcCCCCchHHHHHHHHH
Confidence 444455556667777778888888887653 2222222 3667777777765555555554443
No 416
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=33.69 E-value=6.6e+02 Score=27.39 Aligned_cols=103 Identities=15% Similarity=0.239 Sum_probs=67.4
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCc
Q 009568 160 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 239 (532)
Q Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 239 (532)
.+|..|..+...+-+.++..++.++.++....|+.... .+..++..| .+++..+...|...|.+|....|+-..
T Consensus 304 rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKl-GDpqnKiaskAsylL~~L~~~HPnMK~ 377 (988)
T KOG2038|consen 304 RFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKL-GDPQNKIASKASYLLEGLLAKHPNMKI 377 (988)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhc-CCcchhhhhhHHHHHHHHHhhCCccee
Confidence 45666666666677899999999999998777764333 356677777 566777888888888888877665443
Q ss_pred ccccchHHHHHHhhcCC--CHHHHHHHHHHHHHhc
Q 009568 240 DQVRPALPALAQLVHSN--DEEVLTDACWALSYLS 272 (532)
Q Consensus 240 ~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~l~ 272 (532)
.+ +..+.+++-.+ +.....+++.+|..+.
T Consensus 378 Vv----i~EIer~~FRpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 378 VV----IDEIERLAFRPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred eh----HHHHHHHHcccCccccceeehhhhhhhhH
Confidence 33 23344444333 3334555555555543
No 417
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=33.62 E-value=46 Score=27.80 Aligned_cols=123 Identities=10% Similarity=0.124 Sum_probs=78.4
Q ss_pred chhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHH-hcCchhHHHHHHHHH
Q 009568 319 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA--GNRDQIQAVIDAGLVGPLVNLL-QNAEFDIKKEAAWAI 395 (532)
Q Consensus 319 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~aL 395 (532)
..-+.+.+.+++..+.++++......++.....+++-+.. .++..+-.++..+.+..++..- .-.+.++...-...|
T Consensus 17 ~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIsfL 96 (149)
T PF09758_consen 17 SFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYISFL 96 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHHHH
Confidence 4556778889999999999875467888888888777665 3444555566666666665542 334677777777777
Q ss_pred HHhhcCCCHHHHHHHHH--cCChHHH---HhhcCCCCHHHHHHHHHHHHHH
Q 009568 396 SNATSGGTHEQIKYLVR--EGCIKPL---CDLFVCPDPRIVTVCLEGLENI 441 (532)
Q Consensus 396 ~nl~~~~~~~~~~~l~~--~~~l~~L---~~lL~~~d~~v~~~al~~L~~l 441 (532)
..++..-+.+....+.. .+-.|.+ +.+..++|+-++.++-..+-++
T Consensus 97 K~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 97 KTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 77776554444444432 2344444 3455677777776655554444
No 418
>PRK09169 hypothetical protein; Validated
Probab=33.01 E-value=1.1e+03 Score=29.67 Aligned_cols=15 Identities=27% Similarity=0.262 Sum_probs=7.7
Q ss_pred CHHHHHHHHHHHHHh
Q 009568 257 DEEVLTDACWALSYL 271 (532)
Q Consensus 257 d~~v~~~a~~~L~~l 271 (532)
++.-+.+++|+|+..
T Consensus 329 ~aQ~vAN~LNALSKW 343 (2316)
T PRK09169 329 NAQAVANALNALSKW 343 (2316)
T ss_pred CHHHHHHHHHHHhcC
Confidence 444455555555543
No 419
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.48 E-value=6.6e+02 Score=26.98 Aligned_cols=297 Identities=14% Similarity=0.115 Sum_probs=140.9
Q ss_pred cHHHHHhhhc-CCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568 75 SLPAMVAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (532)
Q Consensus 75 ~l~~lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 153 (532)
.++.+.+.|. +.|+..+..|=.+|+.+... |. .+....-++..++.|--+.-|..+|.++.++....
T Consensus 6 qLe~lCk~LY~s~D~~~R~~AE~~L~e~s~s---pe--------clskCqlll~~gs~pYs~mlAst~L~Klvs~~t~l- 73 (1082)
T KOG1410|consen 6 QLESLCKDLYESTDPTARHRAEKALAELSES---PE--------CLSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPL- 73 (1082)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHccC---HH--------HHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCC-
Confidence 3456666554 77899999999999988643 21 34444455666666778888889999887744311
Q ss_pred HHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHHHhhCCC--chhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHh
Q 009568 154 KVVIDHGAVPIFVKLLASPS----DDVREQAVWALGNVAGDS--PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTL 227 (532)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~nl~~~~--~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L 227 (532)
.......+-..++..|.... +-+....+..++.+..-+ ...++...=.+.+..+.+.+ +..+.+-...++..|
T Consensus 74 pl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl-~~~~ve~~~igv~iL 152 (1082)
T KOG1410|consen 74 PLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFL-QMDNVEHCIIGVQIL 152 (1082)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHh-ccCchHHHHHHHHHH
Confidence 00111122355666665533 334444445555554211 11111111123455566666 444444444455555
Q ss_pred hhccCCCCCCCcccccchHHHHHHhhcCC-CHHHHHHHHHHHHHhccCC-hhHHHHHHHhCchHHHHHhhC-----C-CC
Q 009568 228 SNFCRGKPQPPFDQVRPALPALAQLVHSN-DEEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLG-----H-PS 299 (532)
Q Consensus 228 ~~L~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~-----~-~~ 299 (532)
+.|...-..+....-..-=..+..-++++ --++..-+|..|.....-+ .+..+.-+-..++..-...+. + .+
T Consensus 153 sqLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~D 232 (1082)
T KOG1410|consen 153 SQLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTD 232 (1082)
T ss_pred HHHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccccccc
Confidence 55554321111100000000111111111 1223344444444443111 111111111111111112211 1 00
Q ss_pred ------ccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc------CCHHHHHHH
Q 009568 300 ------PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA------GNRDQIQAV 367 (532)
Q Consensus 300 ------~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~------~~~~~~~~l 367 (532)
-.++.+. ..+..+.+...++.+.++..+- .+..-+.|..+|..+++ .+++. ...
T Consensus 233 Essed~ctVQIPT------------sWRs~f~d~stlqlfFdly~sl-p~~~S~~alsclvqlASvRRsLFN~aeR-a~y 298 (1082)
T KOG1410|consen 233 ESSEDLCTVQIPT------------SWRSSFLDSSTLQLFFDLYHSL-PPELSELALSCLVQLASVRRSLFNGAER-AKY 298 (1082)
T ss_pred cccccccceecCc------------HHHHHhcCchHHHHHHHHhccC-CchhhHHHHHHHHHHHHHHHHHhCCHHH-HHH
Confidence 0122221 2334556777888889999887 88888999999988875 22332 222
Q ss_pred HHcCCHHHHHHHHhcC----chhHHHHHHHHHHHhh
Q 009568 368 IDAGLVGPLVNLLQNA----EFDIKKEAAWAISNAT 399 (532)
Q Consensus 368 ~~~~~i~~L~~ll~~~----~~~v~~~a~~aL~nl~ 399 (532)
+.+ ++....+++.++ |+.--.+-|+.|+.+-
T Consensus 299 l~~-Lv~Gvk~il~np~~LsD~~nyHeFCRllaRlk 333 (1082)
T KOG1410|consen 299 LQH-LVEGVKRILENPQGLSDPANYHEFCRLLARLK 333 (1082)
T ss_pred HHH-HHHHHHHHHhCCcCCCCcchHHHHHHHHHHHH
Confidence 221 455555666553 4555555555555553
No 420
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=32.45 E-value=2.3e+02 Score=24.18 Aligned_cols=74 Identities=15% Similarity=0.096 Sum_probs=50.8
Q ss_pred hcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 009568 200 SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG 274 (532)
Q Consensus 200 ~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~ 274 (532)
..+-+...+..+..-.|..+...++.++.+.... ..-.......++|.+..+|.+..+.-...++.++..+...
T Consensus 26 ~~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~-~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~ 99 (164)
T PF13925_consen 26 RRNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKP-EKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKK 99 (164)
T ss_pred hcCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCc-CcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 3444555555555556777777777777644443 2344445577889999999999998888888888776643
No 421
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=32.19 E-value=1.9e+02 Score=22.53 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=44.7
Q ss_pred CcHHHHHHhhcC---CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhC
Q 009568 117 GVVPRFVEFLMR---EDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAG 189 (532)
Q Consensus 117 g~i~~Lv~lL~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~ 189 (532)
|++..+-+.+.+ ......+..++.++..+..-...... .+.|.++..|++ ..++++..|+.+...+..
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~ 83 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIK 83 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 456666666665 23367788888888888763333322 234667777765 556888888888877753
No 422
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=30.65 E-value=61 Score=30.83 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=42.0
Q ss_pred CCHHHHHHHHhcCchhHHHHHHHHHHHhhcCC------CH-------HHHHHHHHcCChHHHHhhcC
Q 009568 371 GLVGPLVNLLQNAEFDIKKEAAWAISNATSGG------TH-------EQIKYLVREGCIKPLCDLFV 424 (532)
Q Consensus 371 ~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~------~~-------~~~~~l~~~~~l~~L~~lL~ 424 (532)
..+..+++-|...+...|..|+.+|..++.|. .. .....|.+.|+++.|..+|.
T Consensus 60 ~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 60 DFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 45677888888888899999999999998765 12 33445667899999999884
No 423
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=30.54 E-value=7.4e+02 Score=27.01 Aligned_cols=77 Identities=13% Similarity=0.203 Sum_probs=53.1
Q ss_pred hHhhhCCcHHHHHHh----h---cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHH
Q 009568 111 EEVIQSGVVPRFVEF----L---MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWA 183 (532)
Q Consensus 111 ~~~i~~g~i~~Lv~l----L---~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~ 183 (532)
+..+..+.+|.+++. + +...+|.+...++.|++...+ --....+++...++.|.+++. .+++|..|+.|
T Consensus 179 KDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVS--WIdInLIaNd~f~nLLy~fl~--ieelR~aac~c 254 (980)
T KOG2021|consen 179 KDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVS--WIDINLIANDYFLNLLYKFLN--IEELRIAACNC 254 (980)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhh--hhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHH
Confidence 334455667766653 2 223137888888888888775 233445666677888888886 67899999999
Q ss_pred HHHhhCCC
Q 009568 184 LGNVAGDS 191 (532)
Q Consensus 184 L~nl~~~~ 191 (532)
+..+....
T Consensus 255 ilaiVsKk 262 (980)
T KOG2021|consen 255 ILAIVSKK 262 (980)
T ss_pred HHHHHhcC
Confidence 99887544
No 424
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=28.56 E-value=8e+02 Score=26.77 Aligned_cols=92 Identities=13% Similarity=0.093 Sum_probs=60.1
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 009568 87 DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 166 (532)
Q Consensus 87 ~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~ 166 (532)
++.+.-.++.+++...| --.+..++..-.++.|.+++.. .++|..|+.|+..+....-+-.+.+ ..+..|.
T Consensus 206 npgl~~~cLdc~g~fVS---WIdInLIaNd~f~nLLy~fl~i---eelR~aac~cilaiVsKkMkP~dKL---~lln~L~ 276 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVS---WIDINLIANDYFLNLLYKFLNI---EELRIAACNCILAIVSKKMKPMDKL---ALLNMLN 276 (980)
T ss_pred CchHHHHHHHHHHHHhh---hhhhhhhhchhHHHHHHHHHhH---HHHHHHHHHHHHHHHhcCCChhHHH---HHHHHHH
Confidence 67777788888888876 3556667777889999999983 7899999999999987432222222 2233332
Q ss_pred HhhC---------CCCHHHHHHHHHHHHHh
Q 009568 167 KLLA---------SPSDDVREQAVWALGNV 187 (532)
Q Consensus 167 ~lL~---------~~~~~v~~~a~~~L~nl 187 (532)
+.++ ..+.++.+.....+...
T Consensus 277 q~l~lfg~~s~dq~~d~df~e~vskLitg~ 306 (980)
T KOG2021|consen 277 QTLELFGYHSADQMDDLDFWESVSKLITGF 306 (980)
T ss_pred HHHHHHhhhccccccCchHHHHHHHHHhhc
Confidence 2221 14566666666555543
No 425
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.28 E-value=7e+02 Score=25.98 Aligned_cols=298 Identities=14% Similarity=0.084 Sum_probs=146.6
Q ss_pred HHHHHhhhcCCC---hHHHHHHHHHHHHHhcCCCCCchhHhhhC-CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC--
Q 009568 76 LPAMVAGVWSDD---SSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFEAAWALTNIASGT-- 149 (532)
Q Consensus 76 l~~lv~~L~s~~---~~~~~~a~~~l~~l~~~~~~~~~~~~i~~-g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~-- 149 (532)
+..+..+|+..+ .....+.++++...++.. .-+.+.+... -.+..+...++ + ..+...|+.++..+-...
T Consensus 155 L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~-~~~~d~v~a~~pLi~l~F~sl~--~-~~lhe~At~cic~ll~~~~~ 230 (559)
T KOG2081|consen 155 LVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLH-VFPPDQVLASFPLITLAFRSLS--D-DELHEEATECICALLYCSLD 230 (559)
T ss_pred HHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhc-cCCHHHHHhhhHHHHHHHHHcc--c-chhhHHHHHHHHHHHHHhhh
Confidence 344444454322 344455666666665532 2334444433 45666666666 2 467777777776664411
Q ss_pred -hhh--HHHHH--hCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCCchhHHHHHh-cCChHHHHHHhh--hhhhhHHH
Q 009568 150 -SEN--TKVVI--DHGAVPIFVKLL-ASPSDDVREQAVWALGNVAGDSPRCRDLVLS-QGALIPLLAQLN--ERAKLSML 220 (532)
Q Consensus 150 -~~~--~~~i~--~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~~ll~--~~~~~~~~ 220 (532)
++. ...++ ..-.++...++- ...+.+-.+..++++..++.. ........ .+.++.+-.+|. ...+.++.
T Consensus 231 ~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~ea--f~~~i~~np~~~l~~vellLl~~~h~~~evi 308 (559)
T KOG2081|consen 231 RSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEA--FVVLISTNPEEFLRIVELLLLVAGHNDTEVI 308 (559)
T ss_pred hhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHH--HHHHHhhCCCcchhHHHHHHHhccCCchhhh
Confidence 111 11111 112233333322 235677777778888877431 11122222 233333323332 34455777
Q ss_pred HHHHHHhhhccCCCCCCCcccc----cchHHHHHHhhc----C-CC-----------HHHHHHHHHHHHHhccCChhHHH
Q 009568 221 RNATWTLSNFCRGKPQPPFDQV----RPALPALAQLVH----S-ND-----------EEVLTDACWALSYLSDGTNDKIQ 280 (532)
Q Consensus 221 ~~a~~~L~~L~~~~~~~~~~~~----~~~l~~L~~lL~----~-~d-----------~~v~~~a~~~L~~l~~~~~~~~~ 280 (532)
.......+.+.+.-........ .+....+++++. - ++ .+.+..+...+..++
T Consensus 309 e~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~-------- 380 (559)
T KOG2081|consen 309 EASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVA-------- 380 (559)
T ss_pred hhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHH--------
Confidence 7777777777765422221111 233333333331 0 00 112222222222211
Q ss_pred HHH-HhCchHHHHHhhCC--CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCC-CchhHHHHHHHHHHHH
Q 009568 281 AVI-EAGVCPRLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS-HKKSIKKEACWTISNI 356 (532)
Q Consensus 281 ~~~-~~~~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl 356 (532)
.++ ....+..+...+.. ..+...+.++.++..++..-+ .-++.++|.+++++.+- +...++..++-.++.+
T Consensus 381 ~iigs~e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~-----~~e~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~ 455 (559)
T KOG2081|consen 381 FIIGSDECLKQMYIRLKENNASWEEVEAALFILRAVAKNVS-----PEENTIMPEVLKLICNLPEQAPLRYTSILLLGEY 455 (559)
T ss_pred HHhCcHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCC-----ccccchHHHHHHHHhCCccchhHHHHHHHHHHHH
Confidence 111 11223333334433 467889999999999986543 23457788888887542 2345899999999888
Q ss_pred hc---CCHHHHHHHHHcCCHHHHHHHHhcC--chhHHHHHHHHHHHhhcC
Q 009568 357 TA---GNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAWAISNATSG 401 (532)
Q Consensus 357 ~~---~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~ 401 (532)
+. ..|+- +..+.+++..+ .......|+.++.+++..
T Consensus 456 ~ew~~~~p~~---------le~v~~~~~~~~~~~~~as~~a~~~~~i~~~ 496 (559)
T KOG2081|consen 456 SEWVEQHPEL---------LEPVLRYIRQGLQLKRLASAAALAFHRICSA 496 (559)
T ss_pred HHHHHhCcHH---------HHHHHHHHHHHhhhcchhHHHHHHHHHHHHH
Confidence 74 23332 22223322221 122666777777777664
No 426
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=27.62 E-value=6e+02 Score=24.95 Aligned_cols=130 Identities=12% Similarity=0.114 Sum_probs=80.4
Q ss_pred HHHHHhCchHHHHHhhCC-CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHH-hcCCC----chhHHHHHHHHH
Q 009568 280 QAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL-LTHSH----KKSIKKEACWTI 353 (532)
Q Consensus 280 ~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l-L~~~~----~~~v~~~a~~~L 353 (532)
+.+++.+++..|+.+-.. ..+.++..+++.+.++....... .+....+...+.++ +.... .+.+.++-...+
T Consensus 3 Eyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p--lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL 80 (353)
T PF10257_consen 3 EYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP--LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELL 80 (353)
T ss_pred HHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc--cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHH
Confidence 446667888888887655 45678888999999988755432 23344566677777 53221 234566666666
Q ss_pred HHHhc---CCHHHHHHHHHcC--------------------------CHHHHHHHHhcCchhHHHHHHHHHHHhhcCC--
Q 009568 354 SNITA---GNRDQIQAVIDAG--------------------------LVGPLVNLLQNAEFDIKKEAAWAISNATSGG-- 402 (532)
Q Consensus 354 ~nl~~---~~~~~~~~l~~~~--------------------------~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~-- 402 (532)
..+|. .+|.....+++.+ ++..|+.++.+. -++-..|..+|.-+..-.
T Consensus 81 ~~lc~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~Are~LLll~~l~~~ 159 (353)
T PF10257_consen 81 NTLCSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFAREGLLLLMSLASE 159 (353)
T ss_pred HHHHHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHHHHHHHHHHhCCCC
Confidence 66654 5666555555321 356677777765 566677777776666544
Q ss_pred CHHHHHHHHH
Q 009568 403 THEQIKYLVR 412 (532)
Q Consensus 403 ~~~~~~~l~~ 412 (532)
++....++++
T Consensus 160 ~~~~~~~i~~ 169 (353)
T PF10257_consen 160 DPALAQYIVE 169 (353)
T ss_pred CcHHHHHHHH
Confidence 5555566665
No 427
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=26.97 E-value=23 Score=32.17 Aligned_cols=24 Identities=13% Similarity=0.015 Sum_probs=21.0
Q ss_pred hhhhHHHHHHHHHhhHHHHHhhhh
Q 009568 27 RRREDNMVEIRKNKREESLLKKRR 50 (532)
Q Consensus 27 ~~r~~~~~~~Rk~~r~~~~~~~r~ 50 (532)
.-|+.++.++|++||++.+..+|.
T Consensus 10 ~~r~~~~~~~~~~k~~~~~~~~r~ 33 (225)
T cd01882 10 AARQFQRTADIEEKKLHVPVVDRT 33 (225)
T ss_pred HHHHHHHHHHhhhccccceeeccc
Confidence 346678999999999999999996
No 428
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=26.45 E-value=1e+02 Score=27.53 Aligned_cols=96 Identities=16% Similarity=0.173 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHh
Q 009568 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL 211 (532)
Q Consensus 132 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll 211 (532)
..+...+...|..++.++.++...+.+. ++.++..+.......--.+..++..+..+++.....+.+.. +..++.++
T Consensus 75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll 151 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHH
Confidence 4677888899999999998888887752 34333333221111223456677777788777665554443 78888888
Q ss_pred hhhhhhHHHHHHHHHhhhccCC
Q 009568 212 NERAKLSMLRNATWTLSNFCRG 233 (532)
Q Consensus 212 ~~~~~~~~~~~a~~~L~~L~~~ 233 (532)
.... -....+..|+.+|..
T Consensus 152 ~~~g---r~~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 152 RKHG---RQPRYLDFLSSLCVC 170 (207)
T ss_dssp ----------------------
T ss_pred HHcC---CChHHHHHHhhhccc
Confidence 5422 112244455555554
No 429
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=26.35 E-value=2.7e+02 Score=24.26 Aligned_cols=74 Identities=14% Similarity=0.165 Sum_probs=51.5
Q ss_pred HHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009568 289 PRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI 368 (532)
Q Consensus 289 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 368 (532)
+.+.....+++.-++..++.++...... ..... .+++.+-.++.+. +..|++...|+|..++...++.+..++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~d~-~~~Vqkav~w~L~~~~~~~~~~v~~~l 180 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-ETDFD-----LLLEIIERLLHDE-EYFVQKAVGWALREYGKKDPERVIAFL 180 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cccHH-----HHHHHHHHhCCCH-HHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 5677778888887888777777665543 11111 2345556666666 889999999999999987777665555
Q ss_pred H
Q 009568 369 D 369 (532)
Q Consensus 369 ~ 369 (532)
+
T Consensus 181 ~ 181 (197)
T cd06561 181 E 181 (197)
T ss_pred H
Confidence 3
No 430
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=25.63 E-value=4.4e+02 Score=22.74 Aligned_cols=150 Identities=13% Similarity=0.131 Sum_probs=71.3
Q ss_pred HHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHh-cCCHHHHHHH
Q 009568 289 PRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT-AGNRDQIQAV 367 (532)
Q Consensus 289 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~-~~~~~~~~~l 367 (532)
|.|+..|...+ +.......|+.++..-.... .....|.-+-|...+.+. ...-...|..+...+. ....+.+.++
T Consensus 6 plLIsCL~~q~--~k~s~~KiL~~iVs~Va~~v-~~~~~~~W~eL~d~Ils~-~~~e~~kA~~IF~~L~~~l~~efl~~~ 81 (174)
T PF04510_consen 6 PLLISCLTMQE--TKESDFKILRRIVSHVAYEV-FDLQEGGWDELSDCILSL-SENEPVKAFHIFICLPMPLYGEFLIPF 81 (174)
T ss_pred HHHHHHHHhhc--ccHhHHHHHHHHHHHHHHHH-HhcCCCCchhHHHHHHHh-hccchHHHHHHHHhCCchhhhhHHHHH
Confidence 55666665543 22334455555443221111 112445555555555432 2223356777777776 3445666666
Q ss_pred HHcCCHHHHHHHHhcC-chhHHHHHHH---HHH---HhhcCCC-HHHHHHHHHcCChHHHHhhcCCCCH-HHHHHHHHHH
Q 009568 368 IDAGLVGPLVNLLQNA-EFDIKKEAAW---AIS---NATSGGT-HEQIKYLVREGCIKPLCDLFVCPDP-RIVTVCLEGL 438 (532)
Q Consensus 368 ~~~~~i~~L~~ll~~~-~~~v~~~a~~---aL~---nl~~~~~-~~~~~~l~~~~~l~~L~~lL~~~d~-~v~~~al~~L 438 (532)
++. +++...+.|.++ +.++....+. +++ .+..... .+..+.+.. ..+..+.+++..+.. ..+..++.-+
T Consensus 82 ~~~-L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~-~mv~Sv~elV~~g~E~~~l~rgl~~~ 159 (174)
T PF04510_consen 82 MEN-LLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLP-KMVKSVKELVERGMEVGFLRRGLRDF 159 (174)
T ss_pred HHH-HHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH-HHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 665 777777777665 2333321111 111 1112111 122222222 145555555555555 6666666666
Q ss_pred HHHHHh
Q 009568 439 ENILKV 444 (532)
Q Consensus 439 ~~l~~~ 444 (532)
..++..
T Consensus 160 e~~v~~ 165 (174)
T PF04510_consen 160 ESFVSR 165 (174)
T ss_pred HHHHHH
Confidence 666543
No 431
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=25.38 E-value=6.1e+02 Score=24.33 Aligned_cols=99 Identities=11% Similarity=-0.005 Sum_probs=57.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHh
Q 009568 246 LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCII 325 (532)
Q Consensus 246 l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~ 325 (532)
.+.|.+++......|+...+..+-...-.-+........ |++..++.-|.+++.++...+...+-.+...-...
T Consensus 99 ~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~-~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~----- 172 (307)
T PF04118_consen 99 SPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLK-GLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK----- 172 (307)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHH-HHHHHhccccccCCchHHHHHHHHHHHHHHhcChh-----
Confidence 455666666666677777766665433222223233333 67777777788788888888888888887542211
Q ss_pred hcCchHHHHHHhcCCCchhHHHHHHHHHH
Q 009568 326 TYGALPYLLGLLTHSHKKSIKKEACWTIS 354 (532)
Q Consensus 326 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 354 (532)
-+...+-..+-. ++.+|..|...+.
T Consensus 173 --~F~~~lwl~ii~--sp~~Rl~al~~l~ 197 (307)
T PF04118_consen 173 --YFWQCLWLCIIT--SPSRRLGALNYLL 197 (307)
T ss_pred --HHHHHHHHHHhc--CcchhHHHHHHHH
Confidence 223344444432 4567766654443
No 432
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=25.32 E-value=46 Score=33.60 Aligned_cols=68 Identities=19% Similarity=0.228 Sum_probs=46.6
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009568 331 PYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT 399 (532)
Q Consensus 331 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 399 (532)
..+-.+..+. +++++.+|..++++++.........+-+..+-..+++++....+++-+.+..|+.-+.
T Consensus 331 ~~lk~~~a~~-n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 331 KALKSLCAHK-NPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILG 398 (763)
T ss_pred HHHHHHhccc-ChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhh
Confidence 3333444455 8999999999999998764432222223334556777788888888888888887665
No 433
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=24.76 E-value=2.3e+02 Score=19.32 Aligned_cols=43 Identities=14% Similarity=0.243 Sum_probs=34.3
Q ss_pred HHHHHHHhccHHHHHHHh-cCCCHHHHHHHHHHHHHhCCCCccc
Q 009568 461 YAQLVEEAEGLEKIENLQ-SHDNNEIYEKAVKILETYWLEEDDE 503 (532)
Q Consensus 461 ~~~~~~~~g~~~~l~~L~-~~~~~~v~~~a~~il~~~~~~~~~~ 503 (532)
-...+.+.|+-..|..+- ..++++|...+..+++-+..+|.++
T Consensus 11 GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE~e~ 54 (58)
T PF04064_consen 11 GREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDEPEE 54 (58)
T ss_pred HHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCcc
Confidence 477788899999999984 5578999999999998777665443
No 434
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=24.66 E-value=2e+02 Score=24.68 Aligned_cols=76 Identities=13% Similarity=0.033 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHh
Q 009568 258 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLL 337 (532)
Q Consensus 258 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL 337 (532)
-+++..|..++..+.+....... + ..++..+..-|.+ +.+++..+..++.+++...+.....-++ .+++.+-..|
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~-~--~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld-~l~~~l~~~L 115 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRID-I--SEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLD-SLVEPLRKTL 115 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS--H--HHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-H--HHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHh
Confidence 46888888888887654433322 1 1346667777777 8899999999999999887755443333 6777777777
Q ss_pred c
Q 009568 338 T 338 (532)
Q Consensus 338 ~ 338 (532)
+
T Consensus 116 ~ 116 (169)
T PF08623_consen 116 S 116 (169)
T ss_dssp H
T ss_pred h
Confidence 4
No 435
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=23.72 E-value=2.6e+02 Score=21.97 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=27.5
Q ss_pred CccchhhHHHHHHHhhcC-CcchhHHHhhcCchHHHHHHhc
Q 009568 299 SPSVLIPALRTVGNIVTG-DDFQTQCIITYGALPYLLGLLT 338 (532)
Q Consensus 299 ~~~v~~~al~~L~nl~~~-~~~~~~~~~~~~~l~~L~~lL~ 338 (532)
+..+...++.+|.-++.| ..+....+.+..++..+..+|.
T Consensus 66 ~~~~~~q~~~tL~E~iQGPC~eNQ~~l~~s~~~~~i~~lL~ 106 (109)
T PF08454_consen 66 NIELIIQCFDTLTEFIQGPCIENQIALANSKFLDIINDLLS 106 (109)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHhHHHHHHccHHHHHHHHHh
Confidence 345566677777778877 3455566677777777777774
No 436
>PF06367 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR010472 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain (IPR003104 from INTERPRO) is required to inhibit actin polymerisation. The FH3 domain is less well conserved and is required for directing formins to the correct intracellular location, such the mitotic spindle [], or the projection tip during conjugation []. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH3 domain.; GO: 0003779 actin binding, 0016043 cellular component organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=23.64 E-value=4.8e+02 Score=22.81 Aligned_cols=75 Identities=17% Similarity=0.237 Sum_probs=50.2
Q ss_pred CChHHHHhhcCC---CCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHH
Q 009568 414 GCIKPLCDLFVC---PDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAV 490 (532)
Q Consensus 414 ~~l~~L~~lL~~---~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~ 490 (532)
+=...++..+.. .+.+....++..+..++...+.... --.....+...|..+.++.|...+++.+.....
T Consensus 21 ~RF~~lv~~l~~~~~~~~e~~~~~l~~IN~li~~~~d~~~-------R~~lr~e~~~~GL~~il~~l~~~~~~~L~~Qi~ 93 (197)
T PF06367_consen 21 GRFQSLVGALESVDSSDIEYKTACLQFINSLINSPEDLNF-------RVHLRNEFERLGLLDILEKLRNLEDDDLQEQID 93 (197)
T ss_dssp -TTHHHHHHCS--TTS-HHHHHHHHHHHHHHHTT-SSHHH-------HHHHHHHHHHTTHHHHHHHHTTS--HHHHHHHH
T ss_pred ccHHHHHHHHHccccCcHHHHHHHHHHHHHHHcCCCCHHH-------HHHHHHHHHHCCcHHHHHHHHhcchHHHHHHHH
Confidence 346677777773 5567888888888888877755432 122566788899999999999999998877655
Q ss_pred HHHHH
Q 009568 491 KILET 495 (532)
Q Consensus 491 ~il~~ 495 (532)
...+.
T Consensus 94 ~f~~~ 98 (197)
T PF06367_consen 94 IFEEN 98 (197)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 437
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.50 E-value=1.1e+03 Score=26.42 Aligned_cols=135 Identities=16% Similarity=0.169 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC-----CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHH
Q 009568 260 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-----PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLL 334 (532)
Q Consensus 260 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-----~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~ 334 (532)
..+.++..+..++...... +...++.++....+ .++.....+...+|.++..-.+.- +.-.-.+|.|.
T Consensus 483 ~tEaci~~~~sva~~~~~t-----~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P--~~ln~sl~~L~ 555 (982)
T KOG2022|consen 483 RTEACIFQFQSVAEYLGET-----ESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHP--MYLNPSLPLLF 555 (982)
T ss_pred HHHHHHHHHHHHHhhcCcc-----hhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCC--cccCchHHHHH
Confidence 3444555554444332221 12346777766533 367777778888887774322111 11224678888
Q ss_pred HHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--chhHHHHHHHHHHHhhcCCCHH
Q 009568 335 GLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAWAISNATSGGTHE 405 (532)
Q Consensus 335 ~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~~ 405 (532)
+-|..+ +.-..+...|..+|...++......+ +++..+-..+... .+..+..+..+++.+...-.++
T Consensus 556 ~~Lh~s---k~s~q~i~tl~tlC~~C~~~L~py~d-~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pE 624 (982)
T KOG2022|consen 556 QGLHNS---KESEQAISTLKTLCETCPESLDPYAD-QFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPE 624 (982)
T ss_pred HHhcCc---hHHHHHHHHHHHHHHhhhhhCchHHH-HHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHH
Confidence 888644 34556666688888877766655543 2555555555443 4567888888888887755433
No 438
>PF15573 Imm27: Immunity protein 27
Probab=23.43 E-value=5.5e+02 Score=23.12 Aligned_cols=107 Identities=18% Similarity=0.147 Sum_probs=58.4
Q ss_pred HHHHHhhhcC-CChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568 76 LPAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (532)
Q Consensus 76 l~~lv~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 154 (532)
+..+.+.|.+ .++ .+++-.+.+++... +. .+-+.|++++++..+..+..-+.+.++.+|.+ .+
T Consensus 16 ~~~lK~~ll~~~tE---~E~~lli~El~K~G--DF-------svK~LLiqLMN~TkDE~vLNLCiRlFcSV~TH-dD--- 79 (259)
T PF15573_consen 16 ISELKENLLSVQTE---KECLLLIIELLKKG--DF-------SVKNLLIQLMNQTKDEAVLNLCIRLFCSVATH-DD--- 79 (259)
T ss_pred HHHHHHHHhhcchh---HHHHHHHHHHHHhC--Cc-------hhhHHHHHHHhcchhHHHHHHHHHHHHhhcch-Hh---
Confidence 4455554443 333 34455555555532 11 14577899999877577888888999999873 32
Q ss_pred HHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhh
Q 009568 155 VVIDHGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA 215 (532)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~ 215 (532)
+.+.+- +.+|.+.+ ..+-.-+..+...+ ...++|.|+.++..-.
T Consensus 80 -L~~~nN----l~FLs~asE~~v~TF~s~A~~tl------------SyeVIPYLLaLleeWe 124 (259)
T PF15573_consen 80 -LRDSNN----LRFLSSASEFGVFTFASGAITTL------------SYEVIPYLLALLEEWE 124 (259)
T ss_pred -hhcccc----eehHhhhhHHHHHHHHHHhhccc------------hhhHHHHHHHHHHHHh
Confidence 222222 23343322 23333333333333 2346899999996433
No 439
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=23.39 E-value=2.9e+02 Score=24.04 Aligned_cols=66 Identities=14% Similarity=0.253 Sum_probs=44.8
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC
Q 009568 331 PYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGT 403 (532)
Q Consensus 331 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 403 (532)
+.+.....++ +.-+++.++.++...... ...... +++.+-.++.+++.-|++.+.|+|..+.....
T Consensus 108 ~~~~~w~~s~-~~~~rR~~~~~~~~~~~~-~~~~~~-----~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 108 DLLEEWAKSE-NEWVRRAAIVLLLRLIKK-ETDFDL-----LLEIIERLLHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHhCC-cHHHHHHHHHHHHHHHHh-cccHHH-----HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH
Confidence 6777888887 888888887777665543 011111 23444445555788999999999999988733
No 440
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=22.76 E-value=4.4e+02 Score=21.80 Aligned_cols=99 Identities=18% Similarity=0.240 Sum_probs=56.7
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCC---C--HHHH
Q 009568 333 LLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG---T--HEQI 407 (532)
Q Consensus 333 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~---~--~~~~ 407 (532)
+++-|+.+ ...+++.|.++|-+ .+..+ .+.+.+++.++.++...|.+..+.+-.++... . ....
T Consensus 13 ~L~~L~aS-~qSi~kaa~fAlk~--~~~~e--------dL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~~~Y 81 (139)
T PF12243_consen 13 LLRRLNAS-QQSIQKAAQFALKN--RDMEE--------DLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYNYPY 81 (139)
T ss_pred HHHHcchh-HHHHHHHHHHHHHc--cccHH--------HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccccchh
Confidence 44445545 56788888888887 32222 25678888899888888888888877765422 1 1112
Q ss_pred HHHHHcCChHHHHhhcCCCC-H--HHHHHHHHHHHHHHH
Q 009568 408 KYLVREGCIKPLCDLFVCPD-P--RIVTVCLEGLENILK 443 (532)
Q Consensus 408 ~~l~~~~~l~~L~~lL~~~d-~--~v~~~al~~L~~l~~ 443 (532)
..+++. .++.+++..-.++ . .-+..+..+|.++-.
T Consensus 82 v~~l~~-dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~~ 119 (139)
T PF12243_consen 82 VSMLQR-DLPRIVDAVAPPDNSGAANLKSVRKVLKNWSK 119 (139)
T ss_pred HHHHHH-HHHHHHHHhCCCCCccchHHHHHHHHHHHHHH
Confidence 222332 3444444443333 2 344555666666544
No 441
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.66 E-value=1.5e+02 Score=28.76 Aligned_cols=60 Identities=7% Similarity=0.030 Sum_probs=47.7
Q ss_pred HHHHHHHhhcCCcchhHHHhhcCchHHHHHHh--cCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009568 306 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLL--THSHKKSIKKEACWTISNITAGNRDQIQA 366 (532)
Q Consensus 306 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL--~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 366 (532)
..+.++++|...+...+.+-+.|+++.++.-- .+. +|-++.....++.++...+.+..+.
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~-nPfi~e~sI~c~r~Ll~nN~~NQ~~ 437 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDW-NPFIREISILCTRLLLQNNIENQKI 437 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCC-ChHHHHHHHHHHHHHHhcchhhHHH
Confidence 67899999998888888888888888876543 445 8899999999999999876655433
No 442
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=20.63 E-value=1e+03 Score=25.32 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=21.2
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc
Q 009568 342 KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN 382 (532)
Q Consensus 342 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~ 382 (532)
--.+|-.++..|.+|++.+...| -+.|.|++++..
T Consensus 441 y~PLRlhcir~Li~Ls~ssg~fI------Pi~~ll~Eml~~ 475 (661)
T KOG2256|consen 441 YYPLRLHCIRSLISLSRSSGTFI------PLSPLLVEMLKS 475 (661)
T ss_pred chhHHHHHHHHHHHHHhhcCcee------ecHHHHHHHHHH
Confidence 44678888888888887543322 134555665543
No 443
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=20.19 E-value=1e+03 Score=25.15 Aligned_cols=107 Identities=7% Similarity=-0.013 Sum_probs=70.8
Q ss_pred HHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH--HHHHHH
Q 009568 291 LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD--QIQAVI 368 (532)
Q Consensus 291 L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~--~~~~l~ 368 (532)
+++-..+-++.++..+...++-.+..-|. .++.-.++...--.|.+. +..+|.....++-.++...|. .+..+.
T Consensus 280 fvsRy~Dv~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~LSDn-~~~vRl~v~Kil~~L~s~~p~~d~ir~f~ 355 (740)
T COG5537 280 FVSRYIDVDDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSLSDN-HEGVRLLVSKILLFLCSRIPHTDAIRRFV 355 (740)
T ss_pred HhhhccchhHHHHHHHHHHHHHHHhcchH---HHHhhhcccccccccccc-hHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 44445556777888888888877765553 344444666666777777 889999999999999985443 233333
Q ss_pred HcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009568 369 DAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG 402 (532)
Q Consensus 369 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 402 (532)
+. +-..+++++..+..-||..+...++.+-..|
T Consensus 356 eR-Fk~rILE~~r~D~d~VRi~sik~l~~lr~lg 388 (740)
T COG5537 356 ER-FKDRILEFLRTDSDCVRICSIKSLCYLRILG 388 (740)
T ss_pred HH-HHHHHHHHHhhccchhhHHHHHHHHHHHHhc
Confidence 22 4455666666554348888888777775544
Done!