Query 009568
Match_columns 532
No_of_seqs 418 out of 2764
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 08:07:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009568.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009568hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 100.0 1.3E-78 4.4E-83 629.4 44.5 519 1-531 1-529 (529)
2 3ul1_B Importin subunit alpha- 100.0 8.4E-67 2.9E-71 537.7 45.7 486 32-531 17-510 (510)
3 4b8j_A Importin subunit alpha- 100.0 3.3E-65 1.1E-69 530.9 46.6 500 1-504 3-502 (528)
4 1wa5_B Importin alpha subunit; 100.0 4.8E-60 1.6E-64 492.0 39.7 494 5-503 10-515 (530)
5 2jdq_A Importin alpha-1 subuni 100.0 1.4E-47 4.9E-52 390.4 45.6 425 76-503 22-448 (450)
6 3nmz_A APC variant protein; pr 100.0 1.8E-40 6.3E-45 330.3 27.5 366 71-445 29-452 (458)
7 3now_A UNC-45 protein, SD10334 100.0 2.9E-40 1E-44 346.6 28.0 366 75-448 378-787 (810)
8 1xm9_A Plakophilin 1; armadill 100.0 1.9E-39 6.5E-44 328.8 30.8 365 118-501 3-452 (457)
9 3tpo_A Importin subunit alpha- 100.0 1E-38 3.5E-43 330.4 34.2 369 73-445 118-499 (529)
10 3ul1_B Importin subunit alpha- 100.0 5.4E-39 1.8E-43 330.6 31.6 369 73-445 99-480 (510)
11 1jdh_A Beta-catenin; beta-cate 100.0 1.1E-37 3.8E-42 324.1 37.3 402 74-496 101-528 (529)
12 2z6h_A Catenin beta-1, beta-ca 100.0 4.1E-37 1.4E-41 326.4 38.4 405 74-501 98-550 (644)
13 3now_A UNC-45 protein, SD10334 100.0 7.3E-38 2.5E-42 328.4 28.5 406 76-500 332-784 (810)
14 1xm9_A Plakophilin 1; armadill 100.0 6.3E-38 2.2E-42 317.6 22.6 361 75-444 3-450 (457)
15 1wa5_B Importin alpha subunit; 100.0 3.6E-36 1.2E-40 312.3 32.1 369 74-446 130-513 (530)
16 2jdq_A Importin alpha-1 subuni 100.0 1.5E-36 5.2E-41 309.0 28.5 367 74-445 64-445 (450)
17 4b8j_A Importin subunit alpha- 100.0 4.8E-36 1.6E-40 311.4 30.8 366 74-444 117-497 (528)
18 3l6x_A Catenin delta-1; cateni 100.0 4.5E-36 1.5E-40 305.0 27.4 365 74-446 48-479 (584)
19 2z6g_A B-catenin; FULL-length, 100.0 2.2E-34 7.5E-39 310.0 41.8 393 74-489 234-654 (780)
20 3l6x_A Catenin delta-1; cateni 100.0 1.7E-35 5.7E-40 300.8 30.2 372 112-501 43-479 (584)
21 3nmz_A APC variant protein; pr 100.0 1.5E-34 5.2E-39 287.8 23.5 328 71-402 67-452 (458)
22 1jdh_A Beta-catenin; beta-cate 100.0 6.7E-34 2.3E-38 295.6 27.5 403 74-498 59-489 (529)
23 2z6h_A Catenin beta-1, beta-ca 100.0 8.7E-33 3E-37 293.2 29.5 403 74-498 56-486 (644)
24 2z6g_A B-catenin; FULL-length, 100.0 1.8E-32 6.2E-37 295.1 29.0 402 74-497 192-621 (780)
25 3nmw_A APC variant protein; AR 100.0 3.6E-30 1.2E-34 249.1 24.4 273 172-447 44-338 (354)
26 3nmw_A APC variant protein; AR 100.0 2.1E-30 7.2E-35 250.7 20.2 270 132-404 46-338 (354)
27 4hxt_A De novo protein OR329; 100.0 6.7E-27 2.3E-31 218.2 27.2 242 117-402 2-243 (252)
28 4db8_A Armadillo-repeat protei 99.9 3E-27 1E-31 220.7 18.1 239 117-358 12-251 (252)
29 1xqr_A HSPBP1 protein; armadil 99.9 1.1E-26 3.6E-31 218.8 21.8 235 258-501 54-290 (296)
30 4hxt_A De novo protein OR329; 99.9 5.9E-26 2E-30 211.8 25.3 241 74-359 2-242 (252)
31 4db8_A Armadillo-repeat protei 99.9 1.2E-26 3.9E-31 216.7 18.4 239 74-315 12-251 (252)
32 3opb_A SWI5-dependent HO expre 99.9 6E-24 2E-28 218.8 22.6 358 75-445 297-730 (778)
33 3opb_A SWI5-dependent HO expre 99.9 5.4E-24 1.8E-28 219.1 19.6 321 75-400 335-728 (778)
34 4db6_A Armadillo repeat protei 99.9 3.8E-23 1.3E-27 187.1 23.0 198 243-442 11-208 (210)
35 4db6_A Armadillo repeat protei 99.9 2.2E-22 7.4E-27 182.1 23.2 200 115-358 10-209 (210)
36 1xqr_A HSPBP1 protein; armadil 99.9 2.5E-22 8.6E-27 189.0 20.6 226 132-358 54-287 (296)
37 3tt9_A Plakophilin-2; cell adh 99.8 7.6E-21 2.6E-25 170.9 13.3 197 118-316 9-230 (233)
38 3tt9_A Plakophilin-2; cell adh 99.8 3.2E-20 1.1E-24 166.9 12.4 197 74-274 8-230 (233)
39 1b3u_A Protein (protein phosph 99.8 6.2E-18 2.1E-22 177.6 23.8 342 117-496 242-585 (588)
40 4fdd_A Transportin-1; heat rep 99.8 3E-18 1E-22 187.8 19.7 354 76-447 92-475 (852)
41 2vgl_B AP-2 complex subunit be 99.8 1.5E-17 5E-22 174.0 22.4 333 75-446 87-422 (591)
42 4fdd_A Transportin-1; heat rep 99.8 2.1E-17 7.1E-22 181.1 22.9 393 77-498 51-471 (852)
43 1b3u_A Protein (protein phosph 99.8 2.1E-17 7.4E-22 173.4 21.9 381 75-498 165-548 (588)
44 3grl_A General vesicular trans 99.7 4.1E-15 1.4E-19 149.4 33.4 414 74-501 60-553 (651)
45 2vgl_B AP-2 complex subunit be 99.7 1.9E-15 6.7E-20 157.9 27.8 332 74-445 49-384 (591)
46 1oyz_A Hypothetical protein YI 99.7 3.1E-16 1.1E-20 148.2 19.5 257 115-439 21-278 (280)
47 3grl_A General vesicular trans 99.7 1.3E-14 4.6E-19 145.7 29.5 368 74-448 21-454 (651)
48 1w63_A Adapter-related protein 99.7 5E-15 1.7E-19 155.3 25.6 227 15-276 18-266 (618)
49 1oyz_A Hypothetical protein YI 99.7 4.5E-15 1.5E-19 140.2 22.2 254 74-396 23-278 (280)
50 2bpt_A Importin beta-1 subunit 99.6 1.4E-14 4.6E-19 159.2 24.4 355 75-446 325-714 (861)
51 2bpt_A Importin beta-1 subunit 99.6 1.4E-14 4.9E-19 159.0 23.0 396 76-498 371-811 (861)
52 1ibr_B P95, importin beta-1 su 99.6 6.5E-14 2.2E-18 142.2 22.5 389 76-499 3-438 (462)
53 1qgr_A Protein (importin beta 99.6 7.5E-14 2.6E-18 153.6 24.4 274 76-358 174-479 (876)
54 1qgr_A Protein (importin beta 99.6 1.8E-13 6E-18 150.6 26.0 405 76-498 368-827 (876)
55 1u6g_C TIP120 protein, CAND1; 99.6 2.1E-13 7.1E-18 155.3 26.2 405 75-498 7-463 (1230)
56 1ibr_B P95, importin beta-1 su 99.6 1.1E-14 3.8E-19 147.9 12.4 359 76-447 37-441 (462)
57 1w63_A Adapter-related protein 99.6 9.8E-13 3.3E-17 137.9 26.9 327 76-443 36-414 (618)
58 1u6g_C TIP120 protein, CAND1; 99.5 4E-13 1.4E-17 153.0 20.0 398 75-497 87-547 (1230)
59 3ltj_A Alpharep-4; protein eng 99.5 5.6E-12 1.9E-16 112.5 19.7 184 160-399 14-197 (201)
60 3ltm_A Alpha-REP4; protein eng 99.4 2.2E-12 7.7E-17 116.0 16.6 187 116-359 18-204 (211)
61 3ltm_A Alpha-REP4; protein eng 99.4 2.5E-12 8.6E-17 115.7 16.9 188 159-402 18-205 (211)
62 3ltj_A Alpharep-4; protein eng 99.4 3.8E-12 1.3E-16 113.6 16.2 186 115-357 12-197 (201)
63 2vgl_A Adaptor protein complex 99.4 8.3E-11 2.9E-15 122.9 26.5 328 74-443 74-433 (621)
64 2vgl_A Adaptor protein complex 99.3 4.4E-09 1.5E-13 109.9 31.8 320 87-443 51-398 (621)
65 4ady_A RPN2, 26S proteasome re 99.2 2.1E-09 7.1E-14 113.6 20.9 273 75-403 393-679 (963)
66 4gmo_A Putative uncharacterize 99.1 7.8E-10 2.7E-14 117.1 17.1 214 118-357 36-257 (684)
67 2db0_A 253AA long hypothetical 99.1 1E-08 3.5E-13 84.7 17.1 218 158-401 30-247 (253)
68 3b2a_A TON_1937, putative unch 99.0 5.8E-09 2E-13 90.1 15.0 226 243-496 32-259 (265)
69 3tjz_B Coatomer subunit gamma; 99.0 1.7E-08 6E-13 96.1 19.2 277 75-396 69-349 (355)
70 3tjz_B Coatomer subunit gamma; 98.9 4.8E-08 1.7E-12 93.0 16.8 275 118-437 69-347 (355)
71 4gmo_A Putative uncharacterize 98.9 5E-09 1.7E-13 110.9 10.7 197 244-444 35-259 (684)
72 4ady_A RPN2, 26S proteasome re 98.9 4.2E-07 1.4E-11 96.2 24.0 270 118-443 393-676 (963)
73 2db0_A 253AA long hypothetical 98.8 3.7E-07 1.3E-11 75.5 17.8 217 114-358 29-246 (253)
74 2qk2_A LP04448P; mini spindles 98.8 6.9E-09 2.4E-13 95.2 7.7 189 245-445 16-207 (242)
75 2qk2_A LP04448P; mini spindles 98.7 6.6E-08 2.2E-12 88.6 11.3 186 205-401 18-206 (242)
76 1ho8_A Vacuolar ATP synthase s 98.7 5.6E-06 1.9E-10 80.6 23.8 322 159-497 76-475 (480)
77 3b2a_A TON_1937, putative unch 98.6 1.3E-06 4.3E-11 75.7 15.1 187 74-274 33-219 (265)
78 2qk1_A Protein STU2; STU2P, XM 98.6 2.6E-07 8.8E-12 84.6 10.7 190 208-400 22-220 (249)
79 1te4_A Conserved protein MTH18 98.5 1.9E-08 6.5E-13 82.5 1.4 120 285-440 11-130 (131)
80 2qk1_A Protein STU2; STU2P, XM 98.5 3.9E-07 1.3E-11 83.4 9.9 193 164-358 20-220 (249)
81 4hat_C Exportin-1; heat repeat 98.5 1.6E-05 5.5E-10 87.4 23.8 340 85-446 206-621 (1023)
82 2iw3_A Elongation factor 3A; a 98.5 9.6E-06 3.3E-10 87.1 21.3 301 74-399 14-323 (986)
83 1te4_A Conserved protein MTH18 98.5 2.3E-08 8E-13 81.9 0.7 121 116-271 11-131 (131)
84 2x1g_F Cadmus; transport prote 98.4 1.4E-05 4.8E-10 88.6 21.9 329 89-444 204-616 (971)
85 1wa5_C Importin alpha RE-expor 98.3 6.2E-05 2.1E-09 83.2 24.4 296 133-445 376-712 (960)
86 1ho8_A Vacuolar ATP synthase s 98.3 0.00018 6.2E-09 70.1 22.3 324 116-444 76-477 (480)
87 1wa5_C Importin alpha RE-expor 98.2 4.6E-05 1.6E-09 84.2 19.5 335 85-435 416-783 (960)
88 3m1i_C Exportin-1; heat repeat 98.2 0.00031 1.1E-08 78.3 26.0 340 86-445 207-620 (1049)
89 2iw3_A Elongation factor 3A; a 98.2 5.2E-05 1.8E-09 81.5 18.2 298 165-499 19-325 (986)
90 2x19_B Importin-13; nuclear tr 98.1 6.8E-05 2.3E-09 83.1 19.1 331 89-445 217-601 (963)
91 2x1g_F Cadmus; transport prote 98.1 4.9E-05 1.7E-09 84.3 17.6 290 133-444 436-761 (971)
92 2x19_B Importin-13; nuclear tr 98.1 0.00014 4.8E-09 80.5 21.2 339 127-499 459-847 (963)
93 3m1i_C Exportin-1; heat repeat 98.1 0.0013 4.6E-08 73.3 27.6 355 75-447 139-573 (1049)
94 3dad_A FH1/FH2 domain-containi 98.0 0.0001 3.5E-09 68.2 14.9 188 291-488 123-326 (339)
95 4hat_C Exportin-1; heat repeat 98.0 0.0003 1E-08 77.3 21.1 357 75-447 139-573 (1023)
96 3ibv_A Exportin-T; karyopherin 98.0 1.4E-05 4.7E-10 87.7 10.2 345 84-445 203-630 (980)
97 3dad_A FH1/FH2 domain-containi 98.0 0.00012 4E-09 67.9 14.3 185 247-433 121-326 (339)
98 3gjx_A Exportin-1; transport, 97.7 0.0067 2.3E-07 66.6 24.1 296 85-403 218-598 (1073)
99 3gjx_A Exportin-1; transport, 97.7 0.0041 1.4E-07 68.3 21.9 359 119-494 208-644 (1073)
100 2of3_A ZYG-9; multifunctional 97.5 0.0013 4.5E-08 59.6 13.4 181 248-445 50-238 (266)
101 4ffb_C Protein STU2; tubulin f 97.5 0.00095 3.2E-08 62.0 12.8 192 74-274 10-213 (278)
102 3oc3_A Helicase MOT1, MOT1; re 97.5 0.001 3.4E-08 65.4 12.0 259 70-395 170-431 (800)
103 4ffb_C Protein STU2; tubulin f 97.4 0.0058 2E-07 56.6 16.4 191 288-499 12-213 (278)
104 3ibv_A Exportin-T; karyopherin 97.4 0.0017 6E-08 71.2 14.2 307 129-447 205-570 (980)
105 1upk_A MO25 protein; transfera 97.3 0.0099 3.4E-07 55.0 16.3 201 155-358 73-283 (341)
106 3c2g_A SYS-1 protein; beta-cat 97.2 0.031 1.1E-06 51.5 18.1 294 184-496 266-616 (619)
107 2fv2_A RCD1 required for cell 97.2 0.021 7.2E-07 50.5 16.2 184 257-443 14-224 (268)
108 2of3_A ZYG-9; multifunctional 97.2 0.0052 1.8E-07 55.6 12.8 178 163-358 49-236 (266)
109 3c2g_A SYS-1 protein; beta-cat 97.2 0.07 2.4E-06 49.1 19.9 364 77-443 9-473 (619)
110 1lrv_A LRV, leucine-rich repea 97.0 0.00031 1.1E-08 63.2 3.4 185 81-395 57-241 (244)
111 3u0r_A Apoptosis inhibitor 5; 97.0 0.071 2.4E-06 51.8 18.9 247 172-445 40-300 (507)
112 1upk_A MO25 protein; transfera 96.9 0.076 2.6E-06 49.2 18.1 204 280-497 72-282 (341)
113 1lrv_A LRV, leucine-rich repea 96.9 0.00037 1.3E-08 62.8 2.2 185 124-438 57-241 (244)
114 3oc3_A Helicase MOT1, MOT1; re 96.8 0.0039 1.3E-07 61.4 8.7 246 161-439 175-432 (800)
115 3l9t_A Putative uncharacterize 96.4 0.16 5.3E-06 44.6 15.8 145 118-284 72-218 (240)
116 2f31_A Diaphanous protein homo 96.3 0.042 1.4E-06 49.1 11.7 141 342-490 67-220 (233)
117 2fv2_A RCD1 required for cell 95.8 0.67 2.3E-05 41.0 16.6 193 299-497 14-223 (268)
118 3eg5_B Protein diaphanous homo 95.8 0.086 2.9E-06 50.9 12.1 161 319-488 101-284 (383)
119 3l9t_A Putative uncharacterize 95.6 0.14 4.8E-06 44.9 11.5 142 243-412 70-218 (240)
120 3a6p_A Exportin-5; exportin-5, 95.4 0.64 2.2E-05 52.4 19.4 293 122-444 17-381 (1204)
121 3a6p_A Exportin-5; exportin-5, 95.1 2.1 7.2E-05 48.2 22.3 300 75-401 12-381 (1204)
122 2bnx_A Diaphanous protein homo 94.7 1.1 3.7E-05 43.2 16.1 139 342-488 71-222 (386)
123 3u0r_A Apoptosis inhibitor 5; 94.6 1.1 3.7E-05 43.6 15.5 122 215-356 40-161 (507)
124 3ebb_A Phospholipase A2-activa 94.5 0.6 2E-05 43.2 13.4 173 118-296 104-286 (304)
125 3ebb_A Phospholipase A2-activa 94.3 0.18 6.2E-06 46.7 9.2 141 89-233 117-264 (304)
126 1lsh_A Lipovitellin (LV-1N, LV 94.2 2.2 7.4E-05 47.2 19.2 172 204-404 393-580 (1056)
127 3o2t_A Symplekin; heat repeat, 94.0 4.3 0.00015 38.7 18.6 88 89-187 40-127 (386)
128 3eg5_B Protein diaphanous homo 93.8 1.3 4.3E-05 42.7 14.5 156 77-234 69-248 (383)
129 3gs3_A Symplekin, LD45768P; he 93.8 3.6 0.00012 36.9 20.7 100 77-187 18-117 (257)
130 2f31_A Diaphanous protein homo 93.8 1.1 3.8E-05 39.7 13.2 97 93-191 20-127 (233)
131 3fga_B Serine/threonine-protei 92.4 2 6.8E-05 41.1 13.1 259 129-400 96-366 (403)
132 1lsh_A Lipovitellin (LV-1N, LV 91.9 13 0.00045 41.0 21.1 239 75-360 312-578 (1056)
133 3qml_C Protein SLS1, nucleotid 91.3 0.91 3.1E-05 41.3 9.0 134 302-443 44-189 (315)
134 2bnx_A Diaphanous protein homo 90.9 4.9 0.00017 38.6 14.4 154 79-234 9-186 (386)
135 2npp_B PP2A, B subunit, serine 89.7 7.7 0.00026 37.8 14.6 255 131-400 131-399 (449)
136 2p8q_B Snurportin-1; heat repe 88.7 0.32 1.1E-05 29.0 2.5 38 11-50 2-40 (40)
137 1vdy_A Hypothetical protein (R 86.6 1.5 5.2E-05 35.0 6.2 73 415-501 50-133 (140)
138 3o2t_A Symplekin; heat repeat, 84.4 7.8 0.00027 36.9 11.0 120 370-497 62-182 (386)
139 3g2s_A C-terminal fragment of 83.7 3.1 0.00011 33.8 6.9 73 373-445 50-128 (149)
140 1x5b_A Signal transducing adap 83.2 3.1 0.00011 34.3 6.9 71 415-497 53-124 (163)
141 3ldz_A STAM-1, signal transduc 82.7 3 0.0001 33.5 6.5 72 373-444 44-115 (140)
142 3ldz_A STAM-1, signal transduc 81.1 3 0.0001 33.4 5.9 71 415-497 43-113 (140)
143 1mhq_A ADP-ribosylation factor 80.9 6.2 0.00021 31.9 7.7 71 373-443 40-116 (148)
144 3qml_C Protein SLS1, nucleotid 80.8 13 0.00045 33.8 10.4 150 244-399 22-188 (315)
145 3gs3_A Symplekin, LD45768P; he 80.7 31 0.001 30.8 14.6 141 344-497 30-172 (257)
146 1juq_A ADP-ribosylation factor 80.3 5.3 0.00018 33.2 7.4 71 415-497 51-127 (171)
147 1x5b_A Signal transducing adap 78.8 2.8 9.7E-05 34.6 5.1 74 74-147 52-125 (163)
148 1mhq_A ADP-ribosylation factor 78.8 5.7 0.00019 32.2 6.9 71 415-497 39-115 (148)
149 3g2s_A C-terminal fragment of 77.9 5.9 0.0002 32.1 6.7 71 415-497 49-125 (149)
150 1juq_A ADP-ribosylation factor 77.0 7.7 0.00026 32.3 7.3 71 373-443 52-128 (171)
151 1vsy_5 Proteasome activator BL 76.6 9.8 0.00033 41.5 9.9 187 162-358 135-365 (997)
152 1w9c_A CRM1 protein, exportin 74.9 52 0.0018 30.3 13.7 187 301-501 44-248 (321)
153 3ut4_A CTHE_2751, putative unc 70.7 6 0.00021 31.1 4.8 95 372-499 32-131 (134)
154 2jak_A Serine/threonine-protei 69.9 17 0.00059 34.5 8.7 103 130-234 142-247 (392)
155 3zyq_A Hepatocyte growth facto 69.6 3.4 0.00012 36.3 3.6 74 74-147 45-118 (226)
156 3zyq_A Hepatocyte growth facto 66.5 13 0.00045 32.5 6.8 70 415-496 46-116 (226)
157 1vsy_5 Proteasome activator BL 65.8 20 0.00069 39.1 9.4 219 204-444 135-366 (997)
158 1dvp_A HRS, hepatocyte growth 65.4 15 0.00052 31.9 7.0 71 415-497 43-114 (220)
159 1dvp_A HRS, hepatocyte growth 63.5 5.1 0.00018 35.0 3.5 74 74-147 42-115 (220)
160 2jak_A Serine/threonine-protei 62.5 66 0.0023 30.6 11.1 183 243-437 173-361 (392)
161 1vdy_A Hypothetical protein (R 61.5 23 0.00077 28.2 6.5 73 372-444 50-131 (140)
162 3pst_A Protein DOA1; protein d 59.6 58 0.002 31.3 10.1 135 302-447 242-393 (425)
163 1elk_A Target of MYB1; superhe 58.7 25 0.00087 28.6 6.7 71 415-497 54-129 (157)
164 2xpp_A IWS1, ECU08_0440; trans 57.4 30 0.001 27.7 6.6 74 406-496 53-134 (145)
165 3fga_B Serine/threonine-protei 54.0 1.5E+02 0.0052 28.2 18.4 231 243-499 128-367 (403)
166 1vsy_4 Proteasome activator BL 53.0 1.7E+02 0.0058 31.0 13.4 115 152-272 332-454 (799)
167 2b6c_A Hypothetical protein EF 52.1 1.1E+02 0.0039 26.2 10.7 134 248-408 59-195 (220)
168 1elk_A Target of MYB1; superhe 51.2 52 0.0018 26.7 7.4 71 373-443 55-130 (157)
169 2npp_B PP2A, B subunit, serine 50.5 1.8E+02 0.0063 28.1 18.0 230 242-497 160-398 (449)
170 3pst_A Protein DOA1; protein d 50.2 39 0.0013 32.5 7.3 131 135-276 243-392 (425)
171 3s4w_B Protein FACD2, fanconi 49.6 3.2E+02 0.011 30.7 16.6 131 301-444 325-468 (1323)
172 3jxy_A Alkylpurine DNA glycosy 48.8 1.3E+02 0.0046 26.0 10.4 138 248-412 65-206 (232)
173 3l3f_X Protein DOA1, DOA1/UFD3 45.9 28 0.00097 32.7 5.5 102 297-401 210-327 (362)
174 3l3f_X Protein DOA1, DOA1/UFD3 45.6 37 0.0013 31.9 6.3 130 135-275 180-328 (362)
175 3s4w_B Protein FACD2, fanconi 44.5 3.8E+02 0.013 30.1 17.7 101 334-442 406-506 (1323)
176 3gae_A Protein DOA1; UFD3, CDC 43.2 49 0.0017 29.4 6.5 100 171-274 101-218 (253)
177 1wjt_A Transcription elongatio 43.1 30 0.001 25.8 4.3 38 462-499 47-85 (103)
178 3gae_A Protein DOA1; UFD3, CDC 42.5 1.8E+02 0.0061 25.7 12.2 135 302-448 70-222 (253)
179 2xpp_A IWS1, ECU08_0440; trans 41.5 85 0.0029 25.0 6.9 75 279-357 54-135 (145)
180 3nfq_A Transcription factor IW 37.6 89 0.003 25.6 6.6 77 405-498 67-151 (170)
181 3nfq_A Transcription factor IW 33.7 1.6E+02 0.0054 24.2 7.5 77 278-358 68-151 (170)
182 3gjx_B Snurportin-1; transport 33.4 8.3 0.00028 35.8 -0.2 44 8-52 28-71 (365)
183 2b6c_A Hypothetical protein EF 31.5 2.5E+02 0.0084 24.0 13.1 145 120-289 58-204 (220)
184 2g7o_A Protein TRAM; four heli 30.5 45 0.0016 22.6 3.1 19 484-502 51-69 (70)
185 3jxy_A Alkylpurine DNA glycosy 29.6 2.7E+02 0.0093 24.0 11.6 141 121-286 65-208 (232)
186 1sz9_A PCF11 protein; RNA poly 28.0 2.1E+02 0.0071 22.6 7.3 88 306-399 26-113 (144)
187 3rru_A TOM1L1 protein; structu 25.1 1.1E+02 0.0039 24.5 5.2 72 373-444 55-131 (152)
188 1a92_A Delta antigen; leucine 23.3 69 0.0024 19.7 2.6 19 24-42 11-29 (50)
189 4atg_A TAF6; transcription, TF 23.2 3.4E+02 0.011 22.8 8.8 128 203-338 41-178 (196)
190 4atg_A TAF6; transcription, TF 21.8 2.6E+02 0.009 23.5 7.0 112 160-272 40-161 (196)
191 2km4_A Regulator of TY1 transp 21.4 3E+02 0.01 21.6 7.6 101 376-496 11-113 (142)
192 3rru_A TOM1L1 protein; structu 20.9 1.2E+02 0.0042 24.3 4.7 72 415-498 54-130 (152)
193 1pqv_S STP-alpha, transcriptio 20.5 1.7E+02 0.0057 26.8 6.1 37 462-498 38-74 (309)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.3e-78 Score=629.44 Aligned_cols=519 Identities=48% Similarity=0.779 Sum_probs=405.0
Q ss_pred CCCCCCc-chHHHhhhcCC-CCCchHHhhhhhHHHHHHHHHhhHHHHHhhhhhccCCCCCCCCCCCccchhhhhhccHHH
Q 009568 1 MSLRPNA-RAEVRRNRYKV-AVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPA 78 (532)
Q Consensus 1 ~~~~~~~-~~~~~~~~~k~-~~~~~~~~~~r~~~~~~~Rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (532)
||.+++. .+++|++.||+ |+|++|+||||+++.++|||+||+|.+.|||+.....++..++.+............++.
T Consensus 1 ~~~~~~~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (529)
T 3tpo_A 1 MSTNENANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVED 80 (529)
T ss_dssp -------------------------------------------CCSCSCCCCCC---------------CGGGSSCCHHH
T ss_pred CCCCCCCCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHH
Confidence 7888876 57799999997 899999999999999999999999999999987543333222211110111112246899
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009568 79 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID 158 (532)
Q Consensus 79 lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~ 158 (532)
+++.++|+|++.+..|+..++++++.+++++++.+++.|+||.|+++|...+++.++..|+|+|+|++.++++.+..+++
T Consensus 81 lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~ 160 (529)
T 3tpo_A 81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD 160 (529)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999998888999999999999999999987666999999999999999999999999999
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhh----hhHHHHHHHHHhhhccCCC
Q 009568 159 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA----KLSMLRNATWTLSNFCRGK 234 (532)
Q Consensus 159 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~----~~~~~~~a~~~L~~L~~~~ 234 (532)
.|++|.|+.+|.+++..+++.|+|+|+||+.+++.+|+.+.+.|++++|+.++.... ...+++.++|++++++.+.
T Consensus 161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 240 (529)
T 3tpo_A 161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 240 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999995322 3467899999999999987
Q ss_pred -CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHh
Q 009568 235 -PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313 (532)
Q Consensus 235 -~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl 313 (532)
+........+++|.|+.++.+++++++..++|+|++++...++....+...|+++.|+.+|.+++..++.+++++|+|+
T Consensus 241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl 320 (529)
T 3tpo_A 241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320 (529)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 5566666789999999999999999999999999999999988888899999999999999999999999999999999
Q ss_pred hcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHH
Q 009568 314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAW 393 (532)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 393 (532)
+.+++..+..+++.|+++.|+.+|.++ ++.++++|+|+|+|++.+++.+...+++.|++|.|+.++.+++.+++.+|+|
T Consensus 321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~ 399 (529)
T 3tpo_A 321 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAW 399 (529)
T ss_dssp TTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHH
Confidence 999998999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHH
Q 009568 394 AISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEK 473 (532)
Q Consensus 394 aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 473 (532)
+|+|++.+++++++.++++.|++++|+++|+++|++++..++++|.+|++.+++.. ..+.|+..|+++||+++
T Consensus 400 aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~~~~~~~~iee~ggl~~ 472 (529)
T 3tpo_A 400 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEECGGLDK 472 (529)
T ss_dssp HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------ChHHHHHHHHHCCcHHH
Confidence 99999998899999999999999999999999999999999999999999988653 56789999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhCCCCcccc---ccCCCCCCCCccCCCCCCCCCCCCccC
Q 009568 474 IENLQSHDNNEIYEKAVKILETYWLEEDDET---IAAGDGPQPGFPYAGNEVQVPSGGFNF 531 (532)
Q Consensus 474 l~~L~~~~~~~v~~~a~~il~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (532)
|+.||+|+|++||++|..||++||++|++|+ .|+.++ ++|.|+.+ +.++|+|||
T Consensus 473 ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~f~f 529 (529)
T 3tpo_A 473 IEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTS--EGFAFQVQ--DGAPGTFNF 529 (529)
T ss_dssp HTGGGGCSSHHHHHHHHHHHHHHC-------------------------------------
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCCC--cccccCCC--CCCCCCCCC
Confidence 9999999999999999999999999876665 466554 37999877 567799999
No 2
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=8.4e-67 Score=537.73 Aligned_cols=486 Identities=47% Similarity=0.781 Sum_probs=394.3
Q ss_pred HHHHHHHHhhHHHHHhhhhhccCCCCCCCCCCCccchhhhhhccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchh
Q 009568 32 NMVEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIE 111 (532)
Q Consensus 32 ~~~~~Rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~ 111 (532)
..++.|+++++....+.++.....++.+. .+...... ..-..++.+|+.++|+|++.|+.|+..+|++++.+++||++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~ 94 (510)
T 3ul1_B 17 GMLETAAALFERNHMDSPDLGTDDDDLAM-ADIGSNQG-TVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPID 94 (510)
T ss_dssp -------------------------------------C-CSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHH
T ss_pred ccHHHHHHHHHhhccCCccccCCccccch-hhhccccc-hhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHH
Confidence 34556666666666665554332222111 10000011 01136899999999999999999999999999998899999
Q ss_pred HhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009568 112 EVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191 (532)
Q Consensus 112 ~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~ 191 (532)
.+++.|+||.|+++|+..+++.+|.+|+|+|+||++++++++..+++.|++|.|+.+|.+++..+++.|+|+|+||+.++
T Consensus 95 ~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~ 174 (510)
T 3ul1_B 95 NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG 174 (510)
T ss_dssp HHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 99999999999999987666899999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHhcCChHHHHHHhhhhh----hhHHHHHHHHHhhhccCCC-CCCCcccccchHHHHHHhhcCCCHHHHHHHHH
Q 009568 192 PRCRDLVLSQGALIPLLAQLNERA----KLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACW 266 (532)
Q Consensus 192 ~~~~~~~~~~~~l~~L~~ll~~~~----~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~ 266 (532)
+.+|+.+.+.|++++|+.++.... ...+++.++|++++++++. +........+++|.|++++.+++++++..++|
T Consensus 175 ~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~ 254 (510)
T 3ul1_B 175 SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCW 254 (510)
T ss_dssp HHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999999995322 3467899999999999987 55566667899999999999999999999999
Q ss_pred HHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHH
Q 009568 267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIK 346 (532)
Q Consensus 267 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~ 346 (532)
+|++++...++....+.+.|+++.|+.+|.+++..++.+++++|+|++.+++..+..+++.|+++.|..+|.++ ++.++
T Consensus 255 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~ 333 (510)
T 3ul1_B 255 AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQ 333 (510)
T ss_dssp HHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHH
T ss_pred HHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHH
Confidence 99999999888888899999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCC
Q 009568 347 KEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP 426 (532)
Q Consensus 347 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~ 426 (532)
+.|+|+|+|++.+++.++..+++.|++|.|+.++.+++.+++++|+|+|+|++.+++.+++.+|++.|+++.|+++|+++
T Consensus 334 ~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~ 413 (510)
T 3ul1_B 334 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 413 (510)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred HHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCcccc--
Q 009568 427 DPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDET-- 504 (532)
Q Consensus 427 d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~~~~~-- 504 (532)
|++++..++++|.+|++.+++.. ..++|+..|+++||+++|+.||+|+|++||++|..||++||++||+|+
T Consensus 414 d~~i~~~~L~aL~nil~~~~~~~-------~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~ 486 (510)
T 3ul1_B 414 DTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQN 486 (510)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--------
T ss_pred CHHHHHHHHHHHHHHHHHhHhcc-------chHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccccc
Confidence 99999999999999999988653 567899999999999999999999999999999999999999877665
Q ss_pred -ccCCCCCCCCccCCCCCCCCCCCCccC
Q 009568 505 -IAAGDGPQPGFPYAGNEVQVPSGGFNF 531 (532)
Q Consensus 505 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (532)
.|+.++ ++|.|+.+ +.++|+|||
T Consensus 487 ~~~~~~~--~~~~~~~~--~~~~~~~~~ 510 (510)
T 3ul1_B 487 VVPETTS--EGFAFQVQ--DGAPGTFNF 510 (510)
T ss_dssp ----------------------------
T ss_pred cCCCCCc--cccccCCC--CCCCCCCCC
Confidence 466554 37999877 667799999
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=3.3e-65 Score=530.93 Aligned_cols=500 Identities=84% Similarity=1.285 Sum_probs=403.6
Q ss_pred CCCCCCcchHHHhhhcCCCCCchHHhhhhhHHHHHHHHHhhHHHHHhhhhhccCCCCCCCCCCCccchhhhhhccHHHHH
Q 009568 1 MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPAMV 80 (532)
Q Consensus 1 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~r~~~~~~~Rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv 80 (532)
|++..+.+++.|++.||++++++|+|+||+++.++|||+||+|++.|||+.....+..++.... .......+.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~l~~lv 80 (528)
T 4b8j_A 3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAA--TGVDKKLESLPAMI 80 (528)
T ss_dssp ------------------------CCCCC-----------------CCCC------------------------CHHHHH
T ss_pred CCCCCCCChHHHHHhhcccCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCcccccccccc--cchhhhHHHHHHHH
Confidence 7777777889999999999999999999999999999999999999999974322221111000 11112345799999
Q ss_pred hhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCC
Q 009568 81 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG 160 (532)
Q Consensus 81 ~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g 160 (532)
+.|.++++.++..|++.|+++++...+++...++..|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|
T Consensus 81 ~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g 160 (528)
T 4b8j_A 81 GGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHG 160 (528)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCC
Confidence 99999999999999999999998765578899999999999999999876589999999999999998899999999999
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcc
Q 009568 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240 (532)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 240 (532)
+++.|+.+|.++++.+++.|+|+|++|+.+.+.++..+...|++++|+.++..+.+..++..++|+|++|+...+.....
T Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 240 (528)
T 4b8j_A 161 AVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFE 240 (528)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHH
Confidence 99999999999999999999999999999999899999999999999999976778999999999999999987777777
Q ss_pred cccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcch
Q 009568 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 320 (532)
Q Consensus 241 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~ 320 (532)
...+++|.|+.++.++++.++..++|+|++++...+...+.+++.|+++.|+.+|.++++.++..|+++|+|++.+++..
T Consensus 241 ~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 320 (528)
T 4b8j_A 241 QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQ 320 (528)
T ss_dssp HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHH
Confidence 78999999999999999999999999999999988888888999999999999999999999999999999999999888
Q ss_pred hHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009568 321 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 400 (532)
Q Consensus 321 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 400 (532)
.+.+++.|+++.|+.+|.++.++.+++.|+|+|+|++.++++.+..+++.|++|.|+.++.++++.++..|+|+|+|++.
T Consensus 321 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~ 400 (528)
T 4b8j_A 321 TQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATS 400 (528)
T ss_dssp HHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 88999999999999999876578999999999999999989999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcC
Q 009568 401 GGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH 480 (532)
Q Consensus 401 ~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~ 480 (532)
.++++...++++.|+++.|+.+|..++++++..++++|.+++..++........ ..++|+..+.+.||+++|+.|++|
T Consensus 401 ~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~l~~L~~~ 478 (528)
T 4b8j_A 401 GGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAG--DVNVFSQMIDEAEGLEKIENLQSH 478 (528)
T ss_dssp HSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTC--SCCHHHHHHHHTTHHHHHHHGGGC
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccc--cccHHHHHHHHCCcHHHHHHHHcC
Confidence 888899999999999999999999999999999999999999988764332111 356799999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCcccc
Q 009568 481 DNNEIYEKAVKILETYWLEEDDET 504 (532)
Q Consensus 481 ~~~~v~~~a~~il~~~~~~~~~~~ 504 (532)
++++++++|..++++||+.+++++
T Consensus 479 ~~~~v~~~a~~il~~~~~~e~~~~ 502 (528)
T 4b8j_A 479 DNNEIYEKAVKILEAYWMDEEDDT 502 (528)
T ss_dssp SSHHHHHHHHHHHHHHCC------
T ss_pred CCHHHHHHHHHHHHHHCCCccccc
Confidence 999999999999999999887776
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=4.8e-60 Score=491.95 Aligned_cols=494 Identities=55% Similarity=0.833 Sum_probs=425.0
Q ss_pred CCcchHHHhhhcCC-C-CCchHHhhhhhHHHHHHHHHhhHHHHHhhhhhccC---CCCCCCCC----CCccchhhhhhcc
Q 009568 5 PNARAEVRRNRYKV-A-VDADEGRRRREDNMVEIRKNKREESLLKKRREGLQ---SQQFPPPA----PASNLNLQTKLES 75 (532)
Q Consensus 5 ~~~~~~~~~~~~k~-~-~~~~~~~~~r~~~~~~~Rk~~r~~~~~~~r~~~~~---~~~~~~~~----~~~~~~~~~~~~~ 75 (532)
...+++.|++.||+ + +|++|+||||++..+++||+||++.+.|||+.... .+..+... .+. .......+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 88 (530)
T 1wa5_B 10 SKFVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQ-QFYSQLQQE 88 (530)
T ss_dssp --CCCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC-----------------------------CC
T ss_pred CCCchHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhh-hhhhhhHHH
Confidence 34466789999998 8 99999999999999999999999999999987532 11100000 000 000012257
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009568 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV 155 (532)
Q Consensus 76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 155 (532)
++.+++.|+++++.++..|+..|+++++...++++..++..|++|.|+++|.+++++.++..|+|+|++++.++++.+..
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 168 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV 168 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 89999999999999999999999999987656778889999999999999998733999999999999999988999999
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC-
Q 009568 156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK- 234 (532)
Q Consensus 156 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~- 234 (532)
+++.|+++.|+.+|.++++.+++.|+|+|++++.+.+..++.+...|+++.|+.++ .+.+..++..++|+|++|+.+.
T Consensus 169 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~ 247 (530)
T 1wa5_B 169 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKK 247 (530)
T ss_dssp HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSS
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999888999999999999999999 5578899999999999999987
Q ss_pred CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhh
Q 009568 235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 314 (532)
Q Consensus 235 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~ 314 (532)
+........+++|.|+.++.++++.++..++|+|++++...+.....+++.|+++.|+.+|.++++.++..|+++|++++
T Consensus 248 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~ 327 (530)
T 1wa5_B 248 PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 327 (530)
T ss_dssp SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHH
Confidence 66666777899999999999999999999999999999988888888899999999999999999999999999999999
Q ss_pred cCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHH
Q 009568 315 TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWA 394 (532)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 394 (532)
.+++...+.+++.|+++.|+.+|.++ ++.+++.|+|+|+|++.++++.++.+++.|+++.|+.++.++++.++..|+|+
T Consensus 328 ~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~a 406 (530)
T 1wa5_B 328 TGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWA 406 (530)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 99888888889999999999999998 99999999999999999889999999999999999999999999999999999
Q ss_pred HHHhhcCCCH--HHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHH
Q 009568 395 ISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLE 472 (532)
Q Consensus 395 L~nl~~~~~~--~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 472 (532)
|+|++..+++ +...++++.|+++.|+.++.++++.++..++++|.+++..++....... + ..++|+..+.+.||++
T Consensus 407 L~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~-~-~~~~~~~~l~~~g~~~ 484 (530)
T 1wa5_B 407 ISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARG-L-NINENADFIEKAGGME 484 (530)
T ss_dssp HHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHT-C-SSCHHHHHHHHTTHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhccc-c-cccHHHHHHHHcCcHH
Confidence 9999987666 7888899999999999999999999999999999999998776421100 0 3567999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCCCCccc
Q 009568 473 KIENLQSHDNNEIYEKAVKILETYWLEEDDE 503 (532)
Q Consensus 473 ~l~~L~~~~~~~v~~~a~~il~~~~~~~~~~ 503 (532)
+|+.|++|++++|+++|..+|++||..+++|
T Consensus 485 ~L~~L~~~~~~~v~~~a~~il~~~~~~~~~~ 515 (530)
T 1wa5_B 485 KIFNCQQNENDKIYEKAYKIIETYFGEEEDA 515 (530)
T ss_dssp HHHGGGGCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence 9999999999999999999999999987664
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=1.4e-47 Score=390.44 Aligned_cols=425 Identities=61% Similarity=0.963 Sum_probs=386.4
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhC-CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (532)
Q Consensus 76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~-g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 154 (532)
++.+++.|+++++.++..|+..|+++++...+++.+.++.. |++|.|+++|.+++++.++..|+++|++++.++++...
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 78999999999999999999999999875446677788887 99999999999983499999999999999998888888
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (532)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~ 234 (532)
.+++.|+++.|+.+|.++++.+++.|+|+|++++.+.+..++.+.+.|+++.|+.++..+.+..++..++|+|++++.+.
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 89999999999999999999999999999999999988899999999999999999954578999999999999999886
Q ss_pred -CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHh
Q 009568 235 -PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313 (532)
Q Consensus 235 -~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl 313 (532)
+........+++|.|+.++.++++.++..++|+|.+++...++....+.+.++++.|+.+|.++++.++..|+++|+++
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 5555666689999999999999999999999999999988777778888999999999999999999999999999999
Q ss_pred hcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHH
Q 009568 314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAW 393 (532)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 393 (532)
+.+.+...+.+++.|+++.|+.+|.++ ++.+++.|+|+|+|++.+++...+.+++.|++|.|+.++.++++++|..|+|
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~ 340 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAW 340 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 998887788888999999999999998 9999999999999999988999999999999999999999999999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHH
Q 009568 394 AISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEK 473 (532)
Q Consensus 394 aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 473 (532)
+|+|++..++++...++++.|+++.|+.++++++++++..++++|.+++..++.....+. + ..++|+..+.+.||+++
T Consensus 341 ~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~-~-~~~~~~~~l~~~g~~~~ 418 (450)
T 2jdq_A 341 AITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNG-T-GINPYCALIEEAYGLDK 418 (450)
T ss_dssp HHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSC-S-CCCHHHHHHHHHHCHHH
T ss_pred HHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccc-c-chhHHHHHHHHcCcHHH
Confidence 999999877788888888999999999999999999999999999999988765422110 0 35679999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhCCCCccc
Q 009568 474 IENLQSHDNNEIYEKAVKILETYWLEEDDE 503 (532)
Q Consensus 474 l~~L~~~~~~~v~~~a~~il~~~~~~~~~~ 503 (532)
|..|++|++++++..|..+|++||+.|+++
T Consensus 419 l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 448 (450)
T 2jdq_A 419 IEFLQSHENQEIYQKAFDLIEHYFGTEDED 448 (450)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHCCC---
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence 999999999999999999999999877654
No 6
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.8e-40 Score=330.31 Aligned_cols=366 Identities=20% Similarity=0.207 Sum_probs=295.2
Q ss_pred hhhccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCch-hHhhhCCcHHHHHHhhcCCCC-----------HHHHHHH
Q 009568 71 TKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPI-EEVIQSGVVPRFVEFLMREDY-----------PQLQFEA 138 (532)
Q Consensus 71 ~~~~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~-~~~i~~g~i~~Lv~lL~~~~~-----------~~~~~~a 138 (532)
.+++.++.++..+.+.++.. .++++++.+.++++ ..+++.|++|.|+++|+..+. ++++.+|
T Consensus 29 ~~~~~~~~l~~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a 102 (458)
T 3nmz_A 29 TKVEMVYSLLSMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARA 102 (458)
T ss_dssp ----------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHH
T ss_pred chHHHHHHHHHHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHH
Confidence 45678899999999888772 34444443335555 778899999999999997432 7999999
Q ss_pred HHHHHHHhcCChhhHHHHHhCCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhCCCchh
Q 009568 139 AWALTNIASGTSENTKVVIDHGAV----------PIFVKLLASPS--DD-----VRE-------QAVWALGNVAGDSPRC 194 (532)
Q Consensus 139 ~~~L~~l~~~~~~~~~~i~~~g~i----------~~L~~lL~~~~--~~-----v~~-------~a~~~L~nl~~~~~~~ 194 (532)
+|+|+||+.+.++......+.+++ +.+++++.+.. .+ +++ +|+|+|+|++.+ +.+
T Consensus 103 ~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~ 181 (458)
T 3nmz_A 103 SAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEH 181 (458)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHH
Confidence 999999999999999998888888 66777776642 22 545 999999999665 789
Q ss_pred HHHHHhcCChHHHHHHhhh----------hhhhHHHHHHHHHhhhccCCCCCCCccc--ccchHHHHHHhhcCCCHHHHH
Q 009568 195 RDLVLSQGALIPLLAQLNE----------RAKLSMLRNATWTLSNFCRGKPQPPFDQ--VRPALPALAQLVHSNDEEVLT 262 (532)
Q Consensus 195 ~~~~~~~~~l~~L~~ll~~----------~~~~~~~~~a~~~L~~L~~~~~~~~~~~--~~~~l~~L~~lL~~~d~~v~~ 262 (532)
|+.+.+.|++++|+.+|.. ..++.+++.++|+|.|||.+.+...... ..+++|.|+.+|.+++++++.
T Consensus 182 R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~ 261 (458)
T 3nmz_A 182 RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQ 261 (458)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHH
Confidence 9999999999999999942 2467899999999999998863222222 456799999999999999999
Q ss_pred HHHHHHHHhccC-ChhHHHHHHHhCchHHHHHhh-CCCCccchhhHHHHHHHhhcCCcchhHHHh-hcCchHHHHHHhcC
Q 009568 263 DACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQTQCII-TYGALPYLLGLLTH 339 (532)
Q Consensus 263 ~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~ 339 (532)
.++|+|++|+.. ++.....+.+.|+++.|+.+| .+.+..++..|+.+|+||+.+.+.....+. ..|+++.|+.+|.+
T Consensus 262 ~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~ 341 (458)
T 3nmz_A 262 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY 341 (458)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcC
Confidence 999999999985 566778889999999999975 556788999999999999985554444555 78999999999987
Q ss_pred CCch----hHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 009568 340 SHKK----SIKKEACWTISNITA---GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVR 412 (532)
Q Consensus 340 ~~~~----~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 412 (532)
. ++ .+++.|+|+|.|++. +++++.+.+++.|++|.|+.+|.+++..++++|+|+|.|++.. ++++...+++
T Consensus 342 ~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~ 419 (458)
T 3nmz_A 342 R-SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWD 419 (458)
T ss_dssp C-CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHH
T ss_pred C-CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHH
Confidence 6 43 499999999999997 7899999999999999999999999999999999999999875 6788999999
Q ss_pred cCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568 413 EGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG 445 (532)
Q Consensus 413 ~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (532)
.|+++.|+++|.++++.++..++++|.+|+...
T Consensus 420 ~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 420 MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999998753
No 7
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2.9e-40 Score=346.55 Aligned_cols=366 Identities=16% Similarity=0.133 Sum_probs=318.8
Q ss_pred cHHHHHhhhcCC--ChHHHHHHHHHHHHHhcCCCCCchhHhh-hCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh-
Q 009568 75 SLPAMVAGVWSD--DSSLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS- 150 (532)
Q Consensus 75 ~l~~lv~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~i-~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~- 150 (532)
.++.+++.|.++ |++++..|++.|..+... .+....++ +.|++|.|+++|++++ +.+++.|+|+|+||+.+.+
T Consensus 378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~ 454 (810)
T 3now_A 378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEK 454 (810)
T ss_dssp HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchh
Confidence 467888999988 899999999999999764 34444444 6799999999999988 8999999999999998542
Q ss_pred ----------------------------hh---HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH
Q 009568 151 ----------------------------EN---TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVL 199 (532)
Q Consensus 151 ----------------------------~~---~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 199 (532)
.. .+.+++.|++|.|+.+|.++++.++++|+|+|+||+++ +.+|..+.
T Consensus 455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv 533 (810)
T 3now_A 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVV 533 (810)
T ss_dssp CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHH
T ss_pred hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 11 27889999999999999999999999999999999975 55899999
Q ss_pred hcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC-CCCCc--ccccchHHHHHHhhcCC-CHHHHHHHHHHHHHhccCC
Q 009568 200 SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPF--DQVRPALPALAQLVHSN-DEEVLTDACWALSYLSDGT 275 (532)
Q Consensus 200 ~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~--~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~ 275 (532)
+.|++++|+.+| .+.++..++.|+|+|++|+.+. +...+ ....+++|.|+.+|.++ +...+..++|+|.||+..+
T Consensus 534 ~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~ 612 (810)
T 3now_A 534 QEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN 612 (810)
T ss_dssp HTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC
Confidence 999999999999 6667788999999999999764 21111 12346899999999865 3445678999999999998
Q ss_pred hhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhh-cCchHHHHHHhcCCCchhHHHHHHHHHH
Q 009568 276 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT-YGALPYLLGLLTHSHKKSIKKEACWTIS 354 (532)
Q Consensus 276 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 354 (532)
++....+++.|+++.|+.+|.++++.++.+|+++|+||+.+++...+ +++ .|.++.|+.++.+. +..+++.|+|+|+
T Consensus 613 d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~-~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALa 690 (810)
T 3now_A 613 ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKM-FEGNNDRVKFLALLCEDE-DEETATACAGALA 690 (810)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHH-HHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHH-HHhccCcHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999997765444 444 79999999999998 9999999999999
Q ss_pred HHhcCCHHHHHHHHH-cCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCC---CHHH
Q 009568 355 NITAGNRDQIQAVID-AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP---DPRI 430 (532)
Q Consensus 355 nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~---d~~v 430 (532)
|++.+++.+++.+++ .|+++.|+.++.+++.+++..|+|+|.|++.+ +.++..++.+.|++++|+.+++.+ ++++
T Consensus 691 nLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i 769 (810)
T 3now_A 691 IITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKA 769 (810)
T ss_dssp HHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHH
T ss_pred HHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHH
Confidence 999988899999998 89999999999999999999999999999985 678899999999999999999765 6899
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 009568 431 VTVCLEGLENILKVGEAE 448 (532)
Q Consensus 431 ~~~al~~L~~l~~~~~~~ 448 (532)
+..++++|.+++..|.-.
T Consensus 770 ~e~Al~aL~~ll~~g~~~ 787 (810)
T 3now_A 770 REVATQCLAAAERYRIIE 787 (810)
T ss_dssp HHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhCCCcc
Confidence 999999999999987654
No 8
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.9e-39 Score=328.83 Aligned_cols=365 Identities=19% Similarity=0.205 Sum_probs=311.2
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009568 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 197 (532)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 197 (532)
.+|.|+.+|.+++ ++++..|+++|.+++.+++..+..+++.|++|.|+.+|.++++.++..|+|+|.||+.+++..+..
T Consensus 3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5899999999998 899999999999999878888889999999999999999999999999999999999988889999
Q ss_pred HHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc--------C--------CCHHHH
Q 009568 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH--------S--------NDEEVL 261 (532)
Q Consensus 198 ~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~--------~--------~d~~v~ 261 (532)
+.+.|++++|+.+|..+.++++++.++|+|+||+.+......... +++|.|+.++. + .++.+.
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 999999999999995477899999999999999998433333344 99999999993 2 356778
Q ss_pred HHHHHHHHHhccCChhHHHHHHHh-CchHHHHHhhCC------CCccchhhHHHHHHHhhcC------------------
Q 009568 262 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLGH------PSPSVLIPALRTVGNIVTG------------------ 316 (532)
Q Consensus 262 ~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~------------------ 316 (532)
..++|+|+|++.. ++....+.+. |+++.|+.+|.+ .+..+...++.+|.|++..
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 8999999999987 7777888887 999999999975 4667888899999998631
Q ss_pred --------------------------------CcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH--
Q 009568 317 --------------------------------DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD-- 362 (532)
Q Consensus 317 --------------------------------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-- 362 (532)
.+...+.+++.++++.++.+|.++.++.++..|+|+|+|++.++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 1224455677788999999998775789999999999999986533
Q ss_pred -HH-HHHH-HcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCH------HHHHH
Q 009568 363 -QI-QAVI-DAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDP------RIVTV 433 (532)
Q Consensus 363 -~~-~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~------~v~~~ 433 (532)
.+ +.++ +.|++|.|+++|.+++.+++++|+|+|.|++.+. ....++..|+++.|+++|...++ +++..
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~---~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~ 396 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP---LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS 396 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG---GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH---HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence 23 4455 6899999999999999999999999999998852 34556667899999999998653 68889
Q ss_pred HHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCC-CHHHHHHHHHHHHHhCCCCc
Q 009568 434 CLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHD-NNEIYEKAVKILETYWLEED 501 (532)
Q Consensus 434 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~-~~~v~~~a~~il~~~~~~~~ 501 (532)
++++|.+++.... .+...+.++||++.|..|+.|+ ++++|++|.++|.+||...+
T Consensus 397 ~l~~l~ni~~~~~-------------~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 397 ACYTVRNLMASQP-------------QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHTTCT-------------HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHhcCH-------------HHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 9999999986432 3578889999999999999999 99999999999999997653
No 9
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1e-38 Score=330.40 Aligned_cols=369 Identities=26% Similarity=0.406 Sum_probs=326.2
Q ss_pred hccHHHHHhhhc-CCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009568 73 LESLPAMVAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE 151 (532)
Q Consensus 73 ~~~l~~lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 151 (532)
.+.+|.|++.|. ++++.++..|+++|.+++++. ......+++.|++|.|+.+|.+++ ++++..|+|+|+||+.++++
T Consensus 118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~ 195 (529)
T 3tpo_A 118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSA 195 (529)
T ss_dssp TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHH
Confidence 468999999997 455889999999999999863 455677889999999999999998 99999999999999998899
Q ss_pred hHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHH
Q 009568 152 NTKVVIDHGAVPIFVKLLASPS-----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWT 226 (532)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~ 226 (532)
.+..+++.|+++.|+.+|..++ ..+.+.++|+|.+++.............++++.|+.++ .+.+++++..++|+
T Consensus 196 ~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~a 274 (529)
T 3tpo_A 196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA 274 (529)
T ss_dssp HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHH
Confidence 9999999999999999998643 46788999999999987655555555567899999999 78889999999999
Q ss_pred hhhccCCCC-CCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhh
Q 009568 227 LSNFCRGKP-QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIP 305 (532)
Q Consensus 227 L~~L~~~~~-~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~ 305 (532)
|++++.+.+ ........+++|.|+.+|.++++.++..++++|++++.+++.....+++.|+++.|+.+|.++++.++..
T Consensus 275 L~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~ 354 (529)
T 3tpo_A 275 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 354 (529)
T ss_dssp HHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred HHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHH
Confidence 999998752 2233445789999999999999999999999999999998888899999999999999999999999999
Q ss_pred HHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCc
Q 009568 306 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAE 384 (532)
Q Consensus 306 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~ 384 (532)
|+++|+||+.+++.+...+++.|++|.|+.+|.++ +..++++|+|+|+|++. ++++++..+++.|+++.|+.+|.+.+
T Consensus 355 a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d 433 (529)
T 3tpo_A 355 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD 433 (529)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred HHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCC
Confidence 99999999999998899999999999999999999 99999999999999987 67888999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhcC----CCH-HHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568 385 FDIKKEAAWAISNATSG----GTH-EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG 445 (532)
Q Consensus 385 ~~v~~~a~~aL~nl~~~----~~~-~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (532)
++++..++++|.|+... +.. .....+.+.|+++.|..+..+++.++...|...|.+.|...
T Consensus 434 ~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~ 499 (529)
T 3tpo_A 434 TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE 499 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 99999999999999742 233 34455568899999999999999999999999999887543
No 10
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=5.4e-39 Score=330.55 Aligned_cols=369 Identities=26% Similarity=0.408 Sum_probs=325.9
Q ss_pred hccHHHHHhhhcC-CChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009568 73 LESLPAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE 151 (532)
Q Consensus 73 ~~~l~~lv~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 151 (532)
-+.+|.|+++|++ +++.+|..|+++|.+++++. ....+.+++.|++|.|+.+|.+++ ++++..|+|+|+||+.++++
T Consensus 99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~ 176 (510)
T 3ul1_B 99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSA 176 (510)
T ss_dssp TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHH
Confidence 4689999999975 55889999999999999864 556778899999999999999988 99999999999999998899
Q ss_pred hHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHH
Q 009568 152 NTKVVIDHGAVPIFVKLLASPS-----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWT 226 (532)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~ 226 (532)
.+..+++.|+++.|+.+|.+++ ..+.+.++|+|.+++.............++++.|+.++ .+.+++++..++|+
T Consensus 177 ~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~a 255 (510)
T 3ul1_B 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA 255 (510)
T ss_dssp HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHH
Confidence 9999999999999999998743 46788999999999987654455555567899999999 77889999999999
Q ss_pred hhhccCCCC-CCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhh
Q 009568 227 LSNFCRGKP-QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIP 305 (532)
Q Consensus 227 L~~L~~~~~-~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~ 305 (532)
|++|+...+ ........+++|.|+.++.+++..++..++++|++++..++.....+++.|+++.|+.+|.+++..++..
T Consensus 256 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~ 335 (510)
T 3ul1_B 256 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 335 (510)
T ss_dssp HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHH
T ss_pred HHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHH
Confidence 999998752 2233345789999999999999999999999999999999988899999999999999999999999999
Q ss_pred HHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCc
Q 009568 306 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAE 384 (532)
Q Consensus 306 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~ 384 (532)
|+++|+||+.+++.+...+++.|+++.|+.+|.+. +..++++|+|+|+|++. ++++++..+++.|+++.|+.+|.+.+
T Consensus 336 A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d 414 (510)
T 3ul1_B 336 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD 414 (510)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred HHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC
Confidence 99999999999998999999999999999999999 99999999999999997 67888999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhcC----CC-HHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568 385 FDIKKEAAWAISNATSG----GT-HEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG 445 (532)
Q Consensus 385 ~~v~~~a~~aL~nl~~~----~~-~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (532)
++++..++++|.|+... +. ......+.+.|+++.|..+..+++.++...|...|.+.|...
T Consensus 415 ~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~ 480 (510)
T 3ul1_B 415 TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE 480 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 99999999999999752 22 334455567899999999999999999999999999887543
No 11
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.1e-37 Score=324.14 Aligned_cols=402 Identities=18% Similarity=0.202 Sum_probs=341.6
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 153 (532)
+.++.+++.|+++++.++..|+..|.+++... ......+.+.|++|.|+++|.+++ +.++..++.+|.+++.++++.+
T Consensus 101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~ 178 (529)
T 1jdh_A 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence 68999999999999999999999999999863 345666778999999999999987 8999999999999999889999
Q ss_pred HHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568 154 KVVIDHGAVPIFVKLLASP-SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (532)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~ 232 (532)
..+.+.|+++.|+.+|.+. ....+..++.+|.+++. .+..+..+.+.|+++.|+.++ .+.++.+++.++|+|.+|+.
T Consensus 179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~ 256 (529)
T 1jdh_A 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhc
Confidence 9999999999999999874 46677888999999986 456788899999999999999 56688999999999999998
Q ss_pred CCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC--CCccchhhHHHHH
Q 009568 233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRTV 310 (532)
Q Consensus 233 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~al~~L 310 (532)
..+. .....+++|.|++++.+++++++..++|+|++++..+++....+.+.|+++.|+.+|.+ .++.++..|+++|
T Consensus 257 ~~~~--~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L 334 (529)
T 1jdh_A 257 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334 (529)
T ss_dssp TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CChh--hHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence 8633 23457899999999999999999999999999999888888889999999999999975 3478999999999
Q ss_pred HHhhcCCcc---hhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhH
Q 009568 311 GNIVTGDDF---QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDI 387 (532)
Q Consensus 311 ~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 387 (532)
+|++.+++. ....+.+.|+++.|+.+|.++.++.+++.++|+|+|++.++.. ...+++.|++|.|+.++.++++++
T Consensus 335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v 413 (529)
T 1jdh_A 335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDT 413 (529)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhh-hHHHHHcCCHHHHHHHHHHHhHHH
Confidence 999986543 3457888999999999999883369999999999999986554 467889999999999999988899
Q ss_pred HHHHHHHHHH--hhcCC------------------CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 009568 388 KKEAAWAISN--ATSGG------------------THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA 447 (532)
Q Consensus 388 ~~~a~~aL~n--l~~~~------------------~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 447 (532)
|++|+|++.| +..++ .++....+.+.|+++.|+.++.+++++++..+.++|.++...
T Consensus 414 ~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--- 490 (529)
T 1jdh_A 414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--- 490 (529)
T ss_dssp C-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS---
T ss_pred HHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC---
Confidence 9988888877 33222 344456678899999999999999999999999999998632
Q ss_pred hhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009568 448 EKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETY 496 (532)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~ 496 (532)
++++..+.+.|+++.|..|++|+|++|+.+|.+++.++
T Consensus 491 -----------~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 491 -----------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp -----------HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 23578899999999999999999999999999999865
No 12
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.1e-37 Score=326.43 Aligned_cols=405 Identities=19% Similarity=0.226 Sum_probs=344.6
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 153 (532)
+.++.+++.|+++++.++..|+.+|.+++... ......+++.|++|.|+++|.+++ +.++..++.+|.+++.++++.+
T Consensus 98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~ 175 (644)
T 2z6h_A 98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 175 (644)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHH
Confidence 67999999999999999999999999999864 455667778999999999999987 8899999999999998889999
Q ss_pred HHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568 154 KVVIDHGAVPIFVKLLASP-SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (532)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~ 232 (532)
..+.+.|+++.|+.+|.+. ...++..++.+|.+++. ++..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus 176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999874 47788999999999985 556788999999999999999 56688999999999999998
Q ss_pred CCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCC--CccchhhHHHHH
Q 009568 233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP--SPSVLIPALRTV 310 (532)
Q Consensus 233 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~al~~L 310 (532)
..+. .....+++|.|+.++.+.+++++..++|+|++++...+.....+.+.|+++.|+.+|.+. .+.++..|+++|
T Consensus 254 ~~~~--~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 254 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp GCTT--CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 7533 344568999999999999999999999999999998888888899999999999999763 268999999999
Q ss_pred HHhhcCCcc--h-hHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhH
Q 009568 311 GNIVTGDDF--Q-TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDI 387 (532)
Q Consensus 311 ~nl~~~~~~--~-~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 387 (532)
+||+...+. . ...+++.|+++.|+.+|.++.++.+++.|+|+|+|++.+...+ ..+++.|+++.|+.++.+.++++
T Consensus 332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~v 410 (644)
T 2z6h_A 332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDT 410 (644)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhccchhh
Confidence 999975442 2 3347788999999999998734699999999999999875544 78889999999999998866555
Q ss_pred HHHHHH----------------------HHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568 388 KKEAAW----------------------AISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG 445 (532)
Q Consensus 388 ~~~a~~----------------------aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (532)
|++|+| +|.+++. +......+.+.|+++.|+.+|.+.++.++..++++|.++...
T Consensus 411 r~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~- 487 (644)
T 2z6h_A 411 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD- 487 (644)
T ss_dssp TTC----------CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-
T ss_pred hhHhhhccccchhcccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-
Confidence 555554 4455554 234446777899999999999999999999999999998742
Q ss_pred hhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHH------------------HHH--HHHHHHHhCCCCc
Q 009568 446 EAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI------------------YEK--AVKILETYWLEED 501 (532)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v------------------~~~--a~~il~~~~~~~~ 501 (532)
.+++..+.+.|+++.|..++++++++| |.+ +..+++.||..+.
T Consensus 488 -------------~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~~ 550 (644)
T 2z6h_A 488 -------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEP 550 (644)
T ss_dssp -------------HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCSC
T ss_pred -------------HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCCC
Confidence 225788999999999999999999999 544 6778899997664
No 13
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=7.3e-38 Score=328.45 Aligned_cols=406 Identities=16% Similarity=0.125 Sum_probs=335.4
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhC----CcHHHHHHhhcCC--CCHHHHHHHHHHHHHHhcCC
Q 009568 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS----GVVPRFVEFLMRE--DYPQLQFEAAWALTNIASGT 149 (532)
Q Consensus 76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~----g~i~~Lv~lL~~~--~~~~~~~~a~~~L~~l~~~~ 149 (532)
++.|+..+++++..++..|+..|.++.+.....+....+.. .+++.|+++|.++ + ++++..|+|+|.+++. .
T Consensus 332 v~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d-~~v~~~AveaLayLS~-~ 409 (810)
T 3now_A 332 VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKD-KDIRRWAADGLAYLTL-D 409 (810)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCC-SSHHHHHHHHHHHHTT-S
T ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHhC-C
Confidence 58888888888888888999999999764221221122222 3477899999987 5 7999999999999999 5
Q ss_pred hhhHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-----------------------------hhH---H
Q 009568 150 SENTKVVI-DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP-----------------------------RCR---D 196 (532)
Q Consensus 150 ~~~~~~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-----------------------------~~~---~ 196 (532)
++.+..++ +.|++|.|+.+|++++..++..++|+|+||+.+.+ ..+ +
T Consensus 410 ~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~ 489 (810)
T 3now_A 410 AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRIT 489 (810)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHH
Confidence 56666655 57999999999999999999999999999997542 122 5
Q ss_pred HHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q 009568 197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN 276 (532)
Q Consensus 197 ~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~ 276 (532)
.+++.|+++.|+.++ .++++.++..++|+|.||+.+.+........|++|.|+.+|.++++..+..|+|+|++++...+
T Consensus 490 ~VveaGaVp~LV~LL-~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~ 568 (810)
T 3now_A 490 VLANEGITTALCALA-KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN 568 (810)
T ss_dssp HHHHTTHHHHHHHHH-TCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC
Confidence 778999999999999 7788999999999999999765544555568999999999999999999999999999986433
Q ss_pred hHHHH--HHHhCchHHHHHhhCCCCc-cchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHH
Q 009568 277 DKIQA--VIEAGVCPRLVELLGHPSP-SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI 353 (532)
Q Consensus 277 ~~~~~--~~~~~~l~~L~~lL~~~~~-~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 353 (532)
..... ....+++++|+.+|.++.. ..+..|+++|+||+.+++...+.+++.|+++.|..+|.+. ++.+++.|+|+|
T Consensus 569 p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L 647 (810)
T 3now_A 569 PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCL 647 (810)
T ss_dssp HHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHH
T ss_pred hhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 22110 0123689999999986533 3356899999999999888888899999999999999998 999999999999
Q ss_pred HHHhcCCHHHHHHHHH-cCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHH-cCChHHHHhhcCCCCHHHH
Q 009568 354 SNITAGNRDQIQAVID-AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVR-EGCIKPLCDLFVCPDPRIV 431 (532)
Q Consensus 354 ~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~l~~L~~lL~~~d~~v~ 431 (532)
+|++.+. +....+++ .|.++.|+.++.+++..+|+.|+|+|+|++.+ ++.....+++ .|+++.|+.+|.+++.+++
T Consensus 648 ~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~-s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq 725 (810)
T 3now_A 648 CNLVMSE-DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV-SVKCCEKILAIASWLDILHTLIANPSPAVQ 725 (810)
T ss_dssp HHHTTSH-HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-CHHHHHHHHTSTTHHHHHHHHHTCSSHHHH
T ss_pred HHHhCCh-HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCHHHHHHHHCCCCHHHH
Confidence 9999864 45556664 78999999999999999999999999999986 5677888888 8999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcC---CCHHHHHHHHHHHHHhCCCC
Q 009568 432 TVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH---DNNEIYEKAVKILETYWLEE 500 (532)
Q Consensus 432 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~---~~~~v~~~a~~il~~~~~~~ 500 (532)
..++++|.|+...+. .....+.+.|+++.|..|... .+.++++.|.++|+......
T Consensus 726 ~~A~~aL~NL~~~s~-------------e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 726 HRGIVIILNMINAGE-------------EIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp HHHHHHHHHHHTTCH-------------HHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCH-------------HHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 999999999987432 246788899999999999644 48999999999999876543
No 14
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=6.3e-38 Score=317.65 Aligned_cols=361 Identities=17% Similarity=0.187 Sum_probs=302.8
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCc-hhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPP-IEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~-~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 153 (532)
.+|.++..|.++++.++..|+..|++++.. +++ ...+++.|++|.|+++|.+++ +.++..|+|+|.|++.++++++
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~--~~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k 79 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQ--DESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNK 79 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSS--CSSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--ChHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence 579999999999999999999999999864 444 448889999999999999988 9999999999999999889999
Q ss_pred HHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh--------h-------hhh
Q 009568 154 KVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--------R-------AKL 217 (532)
Q Consensus 154 ~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~--------~-------~~~ 217 (532)
..+++.|++|.|+++|. ++++.+++.++|+|+||+.+ +..+..+.+ |++++|+.++.. . .++
T Consensus 80 ~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~ 157 (457)
T 1xm9_A 80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDP 157 (457)
T ss_dssp HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCH
T ss_pred HHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccH
Confidence 99999999999999999 78999999999999999988 668888888 999999999931 1 246
Q ss_pred HHHHHHHHHhhhccCCCCCCCccccc-chHHHHHHhhcC------CCHHHHHHHHHHHHHhccCC---------------
Q 009568 218 SMLRNATWTLSNFCRGKPQPPFDQVR-PALPALAQLVHS------NDEEVLTDACWALSYLSDGT--------------- 275 (532)
Q Consensus 218 ~~~~~a~~~L~~L~~~~~~~~~~~~~-~~l~~L~~lL~~------~d~~v~~~a~~~L~~l~~~~--------------- 275 (532)
.+++.++|+|+|||.++......... |++|.|+.+|.+ .+..++..++++|.+++...
T Consensus 158 ~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~ 237 (457)
T 1xm9_A 158 EVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence 78889999999999873222222333 899999999985 46678889999999886310
Q ss_pred -----------------------------------hhHHHHHHHhCchHHHHHhhCC-CCccchhhHHHHHHHhhcCCcc
Q 009568 276 -----------------------------------NDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDDF 319 (532)
Q Consensus 276 -----------------------------------~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~ 319 (532)
+...+.+++.++++.|+.+|.+ .++.++..|+++|+||+.++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~ 317 (457)
T 1xm9_A 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence 1112334456778889999865 4678999999999999988754
Q ss_pred hh----HHHh-hcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCch------hHH
Q 009568 320 QT----QCII-TYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEF------DIK 388 (532)
Q Consensus 320 ~~----~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~------~v~ 388 (532)
.. +.++ +.|++|.|+.+|.++ +..++++|+|+|+|++.+. ..+.++..+++|.|+++|..+++ ++.
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~ 394 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDIL 394 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHH
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHH
Confidence 32 3334 689999999999999 9999999999999999853 34567777899999999998643 688
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHh
Q 009568 389 KEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP-DPRIVTVCLEGLENILKV 444 (532)
Q Consensus 389 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~-d~~v~~~al~~L~~l~~~ 444 (532)
..++++|.|++.+ +++....+.+.|+++.|+.++.++ +++++..|.++|.+++..
T Consensus 395 ~~~l~~l~ni~~~-~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 395 SSACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp HHHHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcc
Confidence 8999999999876 457788888899999999999999 999999999999998754
No 15
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=3.6e-36 Score=312.34 Aligned_cols=369 Identities=25% Similarity=0.356 Sum_probs=326.2
Q ss_pred ccHHHHHhhhcCC-ChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009568 74 ESLPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (532)
Q Consensus 74 ~~l~~lv~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 152 (532)
+.+|.|++.|.++ ++.++..|+++|.+++... ......++..|++|.|+.+|.+++ +.++..|+|+|++++..+++.
T Consensus 130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccc
Confidence 6799999999997 8999999999999999853 345667778999999999999887 999999999999999988899
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568 153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (532)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~ 232 (532)
+..++..|+++.|+.++.+.+..++..++|+|++++.............++++.|+.++ .+.++.++..++|+|.+|+.
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD 286 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999976522234455678999999999 67788999999999999998
Q ss_pred CCCC-CCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHH
Q 009568 233 GKPQ-PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 311 (532)
Q Consensus 233 ~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~ 311 (532)
..+. .......+++|.|+.++.++++.++..++++|++++.+.+.....+++.|+++.|+.+|.++++.++..|+++|+
T Consensus 287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~ 366 (530)
T 1wa5_B 287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 366 (530)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7422 222233589999999999999999999999999999988888888899999999999999999999999999999
Q ss_pred HhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCH--HHHHHHHHcCCHHHHHHHHhcCchhHH
Q 009568 312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNR--DQIQAVIDAGLVGPLVNLLQNAEFDIK 388 (532)
Q Consensus 312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~ 388 (532)
+++.+++...+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++. +.+ +....+++.|+++.|+.++.+.++.++
T Consensus 367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 445 (530)
T 1wa5_B 367 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 445 (530)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence 99998887888888999999999999988 99999999999999997 455 788889999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCH----------HHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 009568 389 KEAAWAISNATSGGTH----------EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGE 446 (532)
Q Consensus 389 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 446 (532)
..|+++|.+++..+.. .....+.+.|+++.|..++.+++++++..+..+|.+++...+
T Consensus 446 ~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~ 513 (530)
T 1wa5_B 446 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEE 513 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 9999999999875322 245667789999999999999999999999999999986543
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=1.5e-36 Score=309.01 Aligned_cols=367 Identities=25% Similarity=0.330 Sum_probs=323.2
Q ss_pred ccHHHHHhhhcCC-ChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009568 74 ESLPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (532)
Q Consensus 74 ~~l~~lv~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 152 (532)
+.++.+++.|+++ ++.++..|++.|.+++... ......+++.|++|.|+++|.+++ +.++..|+|+|++++..+++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~ 141 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC 141 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence 4689999999998 8999999999999999853 344566778999999999999987 999999999999999988889
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhc
Q 009568 153 TKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 230 (532)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L 230 (532)
+..+++.|+++.|+.++.+ .+..++..++|+|++++... +..+... ..++++.|+.++ .+.++.++..++|+|.++
T Consensus 142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l 219 (450)
T 2jdq_A 142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYL 219 (450)
T ss_dssp HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence 9999999999999999996 78999999999999999765 3332222 378899999999 677889999999999999
Q ss_pred cCCCC-CCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHH
Q 009568 231 CRGKP-QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309 (532)
Q Consensus 231 ~~~~~-~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~ 309 (532)
+...+ ........+++|.|+.++.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++++.++..|+++
T Consensus 220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~ 299 (450)
T 2jdq_A 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299 (450)
T ss_dssp TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence 98752 22223346899999999999999999999999999999888887888889999999999999999999999999
Q ss_pred HHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhcCchhHH
Q 009568 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIK 388 (532)
Q Consensus 310 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 388 (532)
|++++.+++...+.+++.|+++.|+.+|.++ ++.+|..|+|+|+|++.+ +++.++.+++.|+++.|+.++.+++++++
T Consensus 300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 378 (450)
T 2jdq_A 300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV 378 (450)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence 9999998888888888899999999999988 999999999999999974 78888889999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCH----------HHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568 389 KEAAWAISNATSGGTH----------EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG 445 (532)
Q Consensus 389 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (532)
..|+++|.+++..+.. .....+.+.|+++.|..++.++++.++..++.+|.+++...
T Consensus 379 ~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 445 (450)
T 2jdq_A 379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE 445 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 9999999999875332 23466778899999999999999999999999999998543
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=4.8e-36 Score=311.44 Aligned_cols=366 Identities=25% Similarity=0.354 Sum_probs=326.2
Q ss_pred ccHHHHHhhhcCCC-hHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009568 74 ESLPAMVAGVWSDD-SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (532)
Q Consensus 74 ~~l~~lv~~L~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 152 (532)
+.+|.|++.|.+++ +.++..|+++|.++++.. ......++..|++|.|+.+|.+++ +.++..|+|+|++++..++..
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~ 194 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKC 194 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 67999999999887 999999999999999853 455677889999999999999987 999999999999999988889
Q ss_pred HHHHHhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhcc
Q 009568 153 TKVVIDHGAVPIFVKLL-ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC 231 (532)
Q Consensus 153 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~ 231 (532)
+..+.+.|+++.|+.+| .+.+..++..++|+|++++...+.. ......++++.|+.++ .+.++.++..++|+|++++
T Consensus 195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999 5688999999999999999875443 3344578999999999 7788999999999999999
Q ss_pred CCCCCC-CcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCC-CccchhhHHHH
Q 009568 232 RGKPQP-PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP-SPSVLIPALRT 309 (532)
Q Consensus 232 ~~~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~al~~ 309 (532)
...+.. ......+++|.|+.+|.++++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++ ++.++..|+++
T Consensus 273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~ 352 (528)
T 4b8j_A 273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT 352 (528)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence 875221 2333468999999999999999999999999999998888888899999999999999998 89999999999
Q ss_pred HHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhcCchhHH
Q 009568 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIK 388 (532)
Q Consensus 310 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 388 (532)
|+||+.+++.....+++.|+++.|+.+|.+. ++.++..|+|+|+|++.+ +++....+++.|+++.|+.++..++++++
T Consensus 353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~ 431 (528)
T 4b8j_A 353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIV 431 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence 9999998888888899999999999999988 999999999999999984 78889999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCH----------HHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568 389 KEAAWAISNATSGGTH----------EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 444 (532)
Q Consensus 389 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~ 444 (532)
..|+++|.+++..+.. .....+.+.|+++.+..+..++++++...+..++.+++..
T Consensus 432 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 432 TVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 9999999999874322 2466777889999999999999999999999999988754
No 18
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=4.5e-36 Score=304.98 Aligned_cols=365 Identities=19% Similarity=0.201 Sum_probs=302.2
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC-Chhh
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG-TSEN 152 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~-~~~~ 152 (532)
..++.+++.|.++++.++..|+..|++++... .+....+++.|+||.|+++|.+++ ++++..|+|+|.||+.+ ++++
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence 47899999999999999999999999998753 566778889999999999999988 99999999999999985 6999
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh-----------------h
Q 009568 153 TKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE-----------------R 214 (532)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-----------------~ 214 (532)
+..+++.|+|+.|+.+|.+ .+..+++.++++|+||+. .+..+..+.+ +++++|+.++.. .
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999987 678999999999999987 4567777775 579999998721 1
Q ss_pred hhhHHHHHHHHHhhhccCCCCC-CCcc-cccchHHHHHHhhcC------CCHHHHHHHHHHHHHhccCChhH--------
Q 009568 215 AKLSMLRNATWTLSNFCRGKPQ-PPFD-QVRPALPALAQLVHS------NDEEVLTDACWALSYLSDGTNDK-------- 278 (532)
Q Consensus 215 ~~~~~~~~a~~~L~~L~~~~~~-~~~~-~~~~~l~~L~~lL~~------~d~~v~~~a~~~L~~l~~~~~~~-------- 278 (532)
.++.++.+++|+|.||+...+. .... ...++++.|+.++++ .+...++.++|+|.||+......
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 2578999999999999987532 2222 236778899999874 46789999999999998652110
Q ss_pred -----------------HHHHHHhCchHHHHHhhC-CCCccchhhHHHHHHHhhcCCcch----hHHHhhcCchHHHHHH
Q 009568 279 -----------------IQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDFQ----TQCIITYGALPYLLGL 336 (532)
Q Consensus 279 -----------------~~~~~~~~~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~~----~~~~~~~~~l~~L~~l 336 (532)
+..+.+.++++.++.+|. ..++.++..|+++|.||+.+.... ...+.+.+++|.|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 111223355778888885 467889999999999999876422 2244557899999999
Q ss_pred hcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--------chhHHHHHHHHHHHhhcCCCHHHHH
Q 009568 337 LTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--------EFDIKKEAAWAISNATSGGTHEQIK 408 (532)
Q Consensus 337 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--------~~~v~~~a~~aL~nl~~~~~~~~~~ 408 (532)
|.++ +..+++.|+|+|+||+.+... +.++..|++|.|+.+|.++ ..+++..|+++|.|++.. ++++..
T Consensus 364 L~s~-~~~v~~~A~~aL~nLs~~~~~--~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~ 439 (584)
T 3l6x_A 364 LTNE-HERVVKAASGALRNLAVDARN--KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAK 439 (584)
T ss_dssp GGCS-CHHHHHHHHHHHHHHHTTCSC--HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred HcCC-CHHHHHHHHHHHHHHhCChhH--HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHH
Confidence 9998 999999999999999986432 3455788999999999876 357889999999999976 678899
Q ss_pred HHHHcCChHHHHhhcCCC--CHHHHHHHHHHHHHHHHhhh
Q 009568 409 YLVREGCIKPLCDLFVCP--DPRIVTVCLEGLENILKVGE 446 (532)
Q Consensus 409 ~l~~~~~l~~L~~lL~~~--d~~v~~~al~~L~~l~~~~~ 446 (532)
.+.+.|+++.|+.++.+. .+.++..|.++|.++....+
T Consensus 440 ~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 999999999999999986 78999999999999986443
No 19
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=2.2e-34 Score=310.03 Aligned_cols=393 Identities=19% Similarity=0.204 Sum_probs=335.3
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 153 (532)
+.++.|++.|+++++.++..|+.+|.+++... ......+.+.|++|.|+++|.+++ ..++..|+.+|.+++.++++.+
T Consensus 234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~ 311 (780)
T 2z6g_A 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 311 (780)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHH
Confidence 67899999999999999999999999999863 344556668999999999999977 8999999999999998889999
Q ss_pred HHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568 154 KVVIDHGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (532)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~ 232 (532)
..+++.|+++.|+.+|.+.+ ...++.++.+|.+++.. +..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus 312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~ 389 (780)
T 2z6g_A 312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 389 (780)
T ss_dssp HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhc
Confidence 99999999999999998754 56677899999999864 45788888999999999999 56678899999999999998
Q ss_pred CCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC-CCc-cchhhHHHHH
Q 009568 233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSP-SVLIPALRTV 310 (532)
Q Consensus 233 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~-~v~~~al~~L 310 (532)
..+. .....++++.|+.++.+.++.++..++|+|++++...+.....+.+.|+++.|+.+|.+ .+. .++..|+++|
T Consensus 390 ~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL 467 (780)
T 2z6g_A 390 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467 (780)
T ss_dssp TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 7633 33457899999999999999999999999999999888888889999999999999976 333 8999999999
Q ss_pred HHhhcCCcch---hHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchh-
Q 009568 311 GNIVTGDDFQ---TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFD- 386 (532)
Q Consensus 311 ~nl~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~- 386 (532)
+||+...... ...+...++++.|+.+|.++..+.+++.|+|+|+|++.+... ...+.+.|+++.|+.++.+++++
T Consensus 468 ~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~ 546 (780)
T 2z6g_A 468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDT 546 (780)
T ss_dssp HHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHH-HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHH-HHHHHHCCCHHHHHHHHHhcchhH
Confidence 9998765432 346778899999999999883359999999999999986444 47788999999999999876544
Q ss_pred ---------------------HHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568 387 ---------------------IKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG 445 (532)
Q Consensus 387 ---------------------v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (532)
++..++.+|++++. ++.....+.+.|+++.|+.+|.++++.++..++.+|.++...
T Consensus 547 ~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~- 623 (780)
T 2z6g_A 547 QRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD- 623 (780)
T ss_dssp HHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS-
T ss_pred HHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-
Confidence 45556666666764 455666678899999999999999999999999999999632
Q ss_pred hhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHH
Q 009568 446 EAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 489 (532)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a 489 (532)
..+...+.+.|+++.|..|+++++++|+..|
T Consensus 624 -------------~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A 654 (780)
T 2z6g_A 624 -------------KEAAEAIEAEGATAPLTELLHSRNEGVATYA 654 (780)
T ss_dssp -------------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred -------------HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 2357889999999999999999999996553
No 20
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.7e-35 Score=300.78 Aligned_cols=372 Identities=19% Similarity=0.210 Sum_probs=307.0
Q ss_pred HhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-
Q 009568 112 EVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD- 190 (532)
Q Consensus 112 ~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~- 190 (532)
.-...+.+|.||++|.+++ ++++..|+++|.+++.++++++..+++.|+||.|+.+|.+++..+++.|+|+|.||+..
T Consensus 43 ~~~~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~ 121 (584)
T 3l6x_A 43 PNWRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR 121 (584)
T ss_dssp CCCCCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSS
T ss_pred CCcccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccC
Confidence 3346778999999999988 99999999999999998999999999999999999999999999999999999999985
Q ss_pred CchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc----------------
Q 009568 191 SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH---------------- 254 (532)
Q Consensus 191 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~---------------- 254 (532)
++..+..+.+.|++++|+.+|....+..+++.++++|++|+.... .......+++|.|++++.
T Consensus 122 ~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~-~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~ 200 (584)
T 3l6x_A 122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS-IKMEIVDHALHALTDEVIIPHSGWEREPNEDCKP 200 (584)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGG-GHHHHHHHTHHHHHHHTHHHHHCCC---------
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch-hhHHHHhccHHHHHHHHhcccccccccccccccc
Confidence 688999999999999999999554678899999999999998643 333334678999999771
Q ss_pred --CCCHHHHHHHHHHHHHhccCChhHHHHHHHh-CchHHHHHhhCC------CCccchhhHHHHHHHhhcCCc-------
Q 009568 255 --SNDEEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLGH------PSPSVLIPALRTVGNIVTGDD------- 318 (532)
Q Consensus 255 --~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~~~------- 318 (532)
..++.++..++++|.||+...++..+.+.+. |+++.|+.++.+ .+...+..|+++|.||+....
T Consensus 201 ~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~ 280 (584)
T 3l6x_A 201 RHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAE 280 (584)
T ss_dssp -CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCC
T ss_pred cccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchh
Confidence 2367999999999999998887766777764 667899999864 456788999999999996521
Q ss_pred ------------------chhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH---HHHHHHH-HcCCHHHH
Q 009568 319 ------------------FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNR---DQIQAVI-DAGLVGPL 376 (532)
Q Consensus 319 ------------------~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~---~~~~~l~-~~~~i~~L 376 (532)
.....+++.++++.++.+|.++.++.+++.|+|+|.|++.+.. ..++..+ +.+++|.|
T Consensus 281 ~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~L 360 (584)
T 3l6x_A 281 RYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAI 360 (584)
T ss_dssp C--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHH
T ss_pred hhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHH
Confidence 1122233445677889999654488999999999999998652 2334344 46789999
Q ss_pred HHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCC--------CHHHHHHHHHHHHHHHHhhhhh
Q 009568 377 VNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP--------DPRIVTVCLEGLENILKVGEAE 448 (532)
Q Consensus 377 ~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~--------d~~v~~~al~~L~~l~~~~~~~ 448 (532)
+.+|.+++..+++.|+|+|.|++.+... ..++..|+++.|+.+|.+. ..+++..++.+|.+|+.....
T Consensus 361 v~LL~s~~~~v~~~A~~aL~nLs~~~~~---~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~- 436 (584)
T 3l6x_A 361 ADLLTNEHERVVKAASGALRNLAVDARN---KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE- 436 (584)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHTTCSC---HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH-
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCChhH---HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH-
Confidence 9999999999999999999999986542 2334778999999999876 357888999999999865433
Q ss_pred hhccCCCccchHHHHHHHHhccHHHHHHHhcCC--CHHHHHHHHHHHHHhCCCCc
Q 009568 449 KNMGTATADVNQYAQLVEEAEGLEKIENLQSHD--NNEIYEKAVKILETYWLEED 501 (532)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~--~~~v~~~a~~il~~~~~~~~ 501 (532)
....+.+.|+++.|..|..+. .+.+.+.|.++|.+++...+
T Consensus 437 ------------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 437 ------------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp ------------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred ------------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 356778899999999998875 89999999999999987543
No 21
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=287.77 Aligned_cols=328 Identities=19% Similarity=0.181 Sum_probs=276.5
Q ss_pred hhhccHHHHHhhhcCC------------ChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcH----------HHHHHhhcC
Q 009568 71 TKLESLPAMVAGVWSD------------DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVV----------PRFVEFLMR 128 (532)
Q Consensus 71 ~~~~~l~~lv~~L~s~------------~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i----------~~Lv~lL~~ 128 (532)
.+-+.+|.|++.|+.. +++++++|+++|.+++++. .+..+...+.|++ +.+++++.+
T Consensus 67 ~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 145 (458)
T 3nmz_A 67 RQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEA 145 (458)
T ss_dssp HHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 3457899999999964 3699999999999999975 5556666677777 777788876
Q ss_pred CC-CHH-----HHH-------HHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHH
Q 009568 129 ED-YPQ-----LQF-------EAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-----------PSDDVREQAVWAL 184 (532)
Q Consensus 129 ~~-~~~-----~~~-------~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L 184 (532)
.. ..+ ++. .|+|+|.|++. ++++++.+++.|++++|+.+|.. .++.+++.|+|+|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL 224 (458)
T 3nmz_A 146 HEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMAL 224 (458)
T ss_dssp TSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred hccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHH
Confidence 42 112 444 89999999987 69999999999999999999942 3477999999999
Q ss_pred HHhhCCCchhHHHHHh-cCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC--CCCCcccccchHHHHHHhh-cCCCHHH
Q 009568 185 GNVAGDSPRCRDLVLS-QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQLV-HSNDEEV 260 (532)
Q Consensus 185 ~nl~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~l~~L~~lL-~~~d~~v 260 (532)
.||+.+.+..+..+.. .|++++|+.+| .+.+++++..++|+|.||+... .........+++|.|+.+| .+.++.+
T Consensus 225 ~nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v 303 (458)
T 3nmz_A 225 TNLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKEST 303 (458)
T ss_dssp HHHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHH
T ss_pred HHHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHH
Confidence 9999888777766654 56699999999 6788999999999999999852 2223344579999999975 5578899
Q ss_pred HHHHHHHHHHhccCChhHHHHHH-HhCchHHHHHhhCCCCcc----chhhHHHHHHHhhc---CCcchhHHHhhcCchHH
Q 009568 261 LTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLGHPSPS----VLIPALRTVGNIVT---GDDFQTQCIITYGALPY 332 (532)
Q Consensus 261 ~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~----v~~~al~~L~nl~~---~~~~~~~~~~~~~~l~~ 332 (532)
+..++.+|++|+...++....+. ..|+++.|+.+|.+.+.. ++..|+++|.||+. +++..++.+++.|+++.
T Consensus 304 ~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~ 383 (458)
T 3nmz_A 304 LKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQT 383 (458)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHH
Confidence 99999999999984444444555 789999999999886653 89999999999997 77888889999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009568 333 LLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG 402 (532)
Q Consensus 333 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 402 (532)
|+.+|.++ +..++++|+|+|+|++.+++++...+++.|++|.|+.++.+++..+++.|+|+|.|++.+.
T Consensus 384 Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 384 LLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99999998 9999999999999999888999999999999999999999999999999999999999864
No 22
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=6.7e-34 Score=295.63 Aligned_cols=403 Identities=16% Similarity=0.162 Sum_probs=336.5
Q ss_pred ccHHHHHhhhcC-CChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009568 74 ESLPAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (532)
Q Consensus 74 ~~l~~lv~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 152 (532)
+.++.+++.|.+ +++.++..|+..|+++... ..+...+.+.|++|.|+++|.+++ +.++..|+++|.+++..++..
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~ 135 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence 468999999975 4899999999999998764 346777889999999999999988 999999999999999977788
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568 153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (532)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~ 232 (532)
+..+.+.|+++.|+.+|.+++..++..++.+|.+++..++..+..+.+.|+++.|+.++....+......++.+|.+++.
T Consensus 136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 215 (529)
T 1jdh_A 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215 (529)
T ss_dssp HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999998888899999999999999999666566778889999999997
Q ss_pred CCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHH
Q 009568 233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN 312 (532)
Q Consensus 233 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~n 312 (532)
...........++++.|+.++.++++.++..++|+|.+++...+... ...++++.|+.++.++++.++..|+++|++
T Consensus 216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 292 (529)
T 1jdh_A 216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 65433444457899999999999999999999999999997654321 123789999999999999999999999999
Q ss_pred hhcCCcchhHHHhhcCchHHHHHHhcCC-CchhHHHHHHHHHHHHhcCCHH---HHHHHHHcCCHHHHHHHHhcCc-hhH
Q 009568 313 IVTGDDFQTQCIITYGALPYLLGLLTHS-HKKSIKKEACWTISNITAGNRD---QIQAVIDAGLVGPLVNLLQNAE-FDI 387 (532)
Q Consensus 313 l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~ll~~~~-~~v 387 (532)
++.+++.....+.+.|+++.|+.+|.+. .++.++..|+++|+|++.++++ ....+.+.|+++.|+.++.+++ +.+
T Consensus 293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v 372 (529)
T 1jdh_A 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372 (529)
T ss_dssp HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHH
Confidence 9998877888899999999999999763 1479999999999999886433 3557778999999999999876 599
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHH----------------------HHHhh
Q 009568 388 KKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLEN----------------------ILKVG 445 (532)
Q Consensus 388 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~----------------------l~~~~ 445 (532)
+..++|+|+|++.+. .....+.+.|+++.|+.+|.+++++++..+.|++.+ +...
T Consensus 373 ~~~a~~~l~nl~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~- 449 (529)
T 1jdh_A 373 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD- 449 (529)
T ss_dssp HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHhcCh--hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcC-
Confidence 999999999999853 334677899999999999988777777766665554 3221
Q ss_pred hhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009568 446 EAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 498 (532)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 498 (532)
......+.+.|+++.|..+..+++++++..|.+.+.++-.
T Consensus 450 -------------~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~ 489 (529)
T 1jdh_A 450 -------------VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 489 (529)
T ss_dssp -------------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred -------------chHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence 1134567889999999999999999999999999988754
No 23
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.7e-33 Score=293.21 Aligned_cols=403 Identities=17% Similarity=0.176 Sum_probs=341.1
Q ss_pred ccHHHHHhhhcCC-ChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009568 74 ESLPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (532)
Q Consensus 74 ~~l~~lv~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 152 (532)
+.++.+++.|.++ ++.++..|+..|+++... ......+.+.|++|.|+++|.+++ +.++..|+++|.+++...+..
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~ 132 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 132 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence 4589999999865 899999999999988764 346777889999999999999988 999999999999999877788
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568 153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (532)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~ 232 (532)
+..+.+.|+++.|+.+|.++++.++..++.+|.+++..++..+..+.+.|+++.|+.++.......++..++.+|.+|+.
T Consensus 133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 212 (644)
T 2z6h_A 133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212 (644)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999988888899999999999999999666567788999999999997
Q ss_pred CCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHH
Q 009568 233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN 312 (532)
Q Consensus 233 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~n 312 (532)
...........++++.|+.++.+.+..++..++|+|.+++...... ....++++.|+.+|.+.++.++..|+++|++
T Consensus 213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289 (644)
T ss_dssp CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6544444455789999999999999999999999999999754332 1123789999999999999999999999999
Q ss_pred hhcCCcchhHHHhhcCchHHHHHHhcCCCc-hhHHHHHHHHHHHHhcCCH--HHHH-HHHHcCCHHHHHHHHhcCc-hhH
Q 009568 313 IVTGDDFQTQCIITYGALPYLLGLLTHSHK-KSIKKEACWTISNITAGNR--DQIQ-AVIDAGLVGPLVNLLQNAE-FDI 387 (532)
Q Consensus 313 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~--~~~~-~l~~~~~i~~L~~ll~~~~-~~v 387 (532)
|+.+++..+..+.+.|+++.|+.+|.+..+ +.++..|+++|+|++..++ ...+ .+++.|+++.|+.+|.+.+ +.+
T Consensus 290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v 369 (644)
T 2z6h_A 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 369 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence 999887788889999999999999986423 7999999999999997433 2333 4678899999999999874 699
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCC----------------------HHHHHHHHHHHHHHHHhh
Q 009568 388 KKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD----------------------PRIVTVCLEGLENILKVG 445 (532)
Q Consensus 388 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d----------------------~~v~~~al~~L~~l~~~~ 445 (532)
++.|+|+|+|++.+. .....+.+.|+++.|+.+|...+ .+++..++.+|.++....
T Consensus 370 ~~~a~~~L~nLa~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~ 447 (644)
T 2z6h_A 370 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 447 (644)
T ss_dssp HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHccCH--HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999999853 33477789999999999997643 456667777777776532
Q ss_pred hhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009568 446 EAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 498 (532)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 498 (532)
. ....+.+.|+++.|..+..+++++++..|...|.++..
T Consensus 448 ~--------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~ 486 (644)
T 2z6h_A 448 H--------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 486 (644)
T ss_dssp H--------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred H--------------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 1 25567789999999999999999999999998887764
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=1.8e-32 Score=295.12 Aligned_cols=402 Identities=17% Similarity=0.180 Sum_probs=338.0
Q ss_pred ccHHHHHhhhcCC-ChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009568 74 ESLPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (532)
Q Consensus 74 ~~l~~lv~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 152 (532)
+.++.|++.|.++ ++.++..|+..|+++... ......+.+.|++|.|+++|++++ +.++..|+++|.+++...++.
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 4688899999854 899999999999997664 345677888999999999999988 999999999999999977888
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568 153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (532)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~ 232 (532)
+..+.+.|+++.|+.+|.+++..++..++.+|.+++..++..+..+.+.|+++.|+.++...........++.+|.+|+.
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 348 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 88898999999999999999999999999999999988888899999999999999999655556677788999999997
Q ss_pred CCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHH
Q 009568 233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN 312 (532)
Q Consensus 233 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~n 312 (532)
...........++++.|+.++.+.+..++..++|+|.+++...... ....++++.|+.+|.+.++.++..|+++|++
T Consensus 349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6443344445789999999999999999999999999999765432 1123689999999999999999999999999
Q ss_pred hhcCCcchhHHHhhcCchHHHHHHhcCCCc-hhHHHHHHHHHHHHhcCCHH---HHHHHHHcCCHHHHHHHHhcCch-hH
Q 009568 313 IVTGDDFQTQCIITYGALPYLLGLLTHSHK-KSIKKEACWTISNITAGNRD---QIQAVIDAGLVGPLVNLLQNAEF-DI 387 (532)
Q Consensus 313 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~ll~~~~~-~v 387 (532)
|+.+++.....+++.|+++.|+.+|.+..+ ..++..|+++|+||+..+++ ....+...++++.|+.+|.+++. .+
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v 505 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 505 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence 999888888889999999999999976313 48999999999999875433 23466788999999999998764 99
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCC----------------------HHHHHHHHHHHHHHHHhh
Q 009568 388 KKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD----------------------PRIVTVCLEGLENILKVG 445 (532)
Q Consensus 388 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d----------------------~~v~~~al~~L~~l~~~~ 445 (532)
++.|+|+|+|++.+ +.....+.+.|+++.|+.+|.+.+ ++++..++.+|.++....
T Consensus 506 ~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~ 583 (780)
T 2z6g_A 506 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI 583 (780)
T ss_dssp HHHHHHHHHHHHSS--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh
Confidence 99999999999974 444577888999999999997543 345666777777775321
Q ss_pred hhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009568 446 EAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW 497 (532)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~ 497 (532)
.....+.+.|+++.|..+..+++++++..|...|.++.
T Consensus 584 --------------~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 621 (780)
T 2z6g_A 584 --------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 621 (780)
T ss_dssp --------------HHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred --------------hhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 12456788999999999999999999999998887764
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=3.6e-30 Score=249.09 Aligned_cols=273 Identities=20% Similarity=0.203 Sum_probs=237.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh----------hhhhHHHHHHHHHhhhccCCCCCCCccc
Q 009568 172 PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE----------RAKLSMLRNATWTLSNFCRGKPQPPFDQ 241 (532)
Q Consensus 172 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~----------~~~~~~~~~a~~~L~~L~~~~~~~~~~~ 241 (532)
+......+|+|+|+|++.+ +.+|+.+.+.|++++|+.+|.. ..++.+++.++|+|.||+.+.+......
T Consensus 44 ~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i 122 (354)
T 3nmw_A 44 PVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL 122 (354)
T ss_dssp GGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4456677999999999987 6799999999999999999942 2357899999999999998863222222
Q ss_pred --ccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC-ChhHHHHHHHhCchHHHHHhh-CCCCccchhhHHHHHHHhhcCC
Q 009568 242 --VRPALPALAQLVHSNDEEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGD 317 (532)
Q Consensus 242 --~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~ 317 (532)
..+++|.|+.+|.+++++++..++|+|.+|+.. +++....+.+.|+++.|+.+| .+.+..++..|+.+|+||+...
T Consensus 123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 202 (354)
T 3nmw_A 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202 (354)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence 456799999999999999999999999999985 556678888999999999975 6678889999999999999866
Q ss_pred cchhHHHh-hcCchHHHHHHhcCCCch----hHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHHhcCchhHHH
Q 009568 318 DFQTQCII-TYGALPYLLGLLTHSHKK----SIKKEACWTISNITA---GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKK 389 (532)
Q Consensus 318 ~~~~~~~~-~~~~l~~L~~lL~~~~~~----~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 389 (532)
+.....+. ..|+++.|+.+|.+. ++ .+++.|+|+|.|++. ++++..+.+.+.|+++.|+.+|.+++..+++
T Consensus 203 ~~nk~~i~~~~Gai~~Lv~lL~~~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 281 (354)
T 3nmw_A 203 TENKADICAVDGALAFLVGTLTYR-SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS 281 (354)
T ss_dssp HHHHHHHHHSTTHHHHHHHHTTCC-CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHH
T ss_pred hhhhHHHHHhcCcHHHHHHHhccC-CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHH
Confidence 55555555 789999999999876 43 499999999999997 7889999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 009568 390 EAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA 447 (532)
Q Consensus 390 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 447 (532)
+|+|+|.|++.. ++++...+.+.|+++.|+++|.++++.++..+.++|.+|+...+.
T Consensus 282 ~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 282 NACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999865 678889999999999999999999999999999999999986544
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=2.1e-30 Score=250.74 Aligned_cols=270 Identities=21% Similarity=0.189 Sum_probs=234.4
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCCchhHHHHHh
Q 009568 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-----------PSDDVREQAVWALGNVAGDSPRCRDLVLS 200 (532)
Q Consensus 132 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 200 (532)
...+..|+|+|.|++. ++++++.+++.|+++.|+.+|.. .++.+++.|+|+|.||+...+..+..+..
T Consensus 46 ~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3556689999999999 58999999999999999999942 24789999999999999888777777754
Q ss_pred -cCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC--CCCCcccccchHHHHHHhh-cCCCHHHHHHHHHHHHHhccCCh
Q 009568 201 -QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQLV-HSNDEEVLTDACWALSYLSDGTN 276 (532)
Q Consensus 201 -~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~l~~~~~ 276 (532)
.|++++|+.+| .+.+++++..++|+|.||+... .........+++|.|+++| .+.++.++..++++|++|+...+
T Consensus 125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 56699999999 6788999999999999999852 2233344579999999975 56789999999999999998665
Q ss_pred hHHHHHH-HhCchHHHHHhhCCCCc----cchhhHHHHHHHhhc---CCcchhHHHhhcCchHHHHHHhcCCCchhHHHH
Q 009568 277 DKIQAVI-EAGVCPRLVELLGHPSP----SVLIPALRTVGNIVT---GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKE 348 (532)
Q Consensus 277 ~~~~~~~-~~~~l~~L~~lL~~~~~----~v~~~al~~L~nl~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~ 348 (532)
+....+. ..|+++.|+.+|.++++ .++..|+++|.|++. +++..++.+.+.|+++.|+.+|.++ +..+++.
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~ 282 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN 282 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence 5545555 78999999999987654 389999999999997 6778888999999999999999998 9999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCH
Q 009568 349 ACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH 404 (532)
Q Consensus 349 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~ 404 (532)
|+|+|+|++.+++++.+.+++.|++|.|+.++.+++..+++.|+++|.|++.+...
T Consensus 283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999988899999999999999999999999999999999999999987543
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=6.7e-27 Score=218.20 Aligned_cols=242 Identities=34% Similarity=0.518 Sum_probs=217.3
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009568 117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD 196 (532)
Q Consensus 117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 196 (532)
|.+|.|+++|.+++ ++++..|+++|.+++..+++.+..+++.|+++.|+.+|.++++.++..++++|++++.+.+..+.
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 67999999999998 99999999999999998888999999999999999999999999999999999999988788888
Q ss_pred HHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q 009568 197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN 276 (532)
Q Consensus 197 ~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~ 276 (532)
.+.+.|+++.++.++ .++++.++..++++|++++...+
T Consensus 81 ~~~~~~~i~~l~~ll------------------------------------------~~~~~~v~~~a~~~L~~l~~~~~ 118 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLL------------------------------------------TSTDSEVQKEAARALANIASGPD 118 (252)
T ss_dssp HHHHTTHHHHHHHHT------------------------------------------TCSSHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHCCCHHHHHHHH------------------------------------------cCCCHHHHHHHHHHHHHHHcCCH
Confidence 777776666655555 44556677777777777776666
Q ss_pred hHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHH
Q 009568 277 DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI 356 (532)
Q Consensus 277 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 356 (532)
.....+.+.|+++.|+.++.++++.++..++++|++++.+.+.....+.+.|+++.|+.++.++ ++.++..|+|+|+++
T Consensus 119 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l 197 (252)
T 4hxt_A 119 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANI 197 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHH
Confidence 6667788889999999999999999999999999999998887778899999999999999988 999999999999999
Q ss_pred hcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009568 357 TAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG 402 (532)
Q Consensus 357 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 402 (532)
+.+++...+.+.+.|+++.|+.++.+++++++..|+++|.|++...
T Consensus 198 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 198 ASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp TTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 9988999999999999999999999999999999999999998754
No 28
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=3e-27 Score=220.68 Aligned_cols=239 Identities=36% Similarity=0.560 Sum_probs=220.0
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009568 117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD 196 (532)
Q Consensus 117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 196 (532)
...+.++++|.+++ ++++..|+++|.++...+++.+..+++.|+++.|+.+|.++++.++..|+++|++++.+.+..+.
T Consensus 12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 46899999999998 89999999999887766778888999999999999999999999999999999999998888999
Q ss_pred HHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCC-CcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 009568 197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP-PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT 275 (532)
Q Consensus 197 ~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~ 275 (532)
.+.+.|+++.|+.++ .+.++.++..++|+|.+|+.+.+.. ......+++|.|+.++.++++.++..++|+|++++...
T Consensus 91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6678999999999999999886443 44555789999999999999999999999999999988
Q ss_pred hhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 009568 276 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN 355 (532)
Q Consensus 276 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 355 (532)
+.....+.+.|+++.|+.+|.++++.++..|+++|++++.+++.....+++.|+++.|+.++.+. ++.++..|+|+|+|
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999988888888899999999999999998 99999999999999
Q ss_pred Hhc
Q 009568 356 ITA 358 (532)
Q Consensus 356 l~~ 358 (532)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 974
No 29
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.95 E-value=1.1e-26 Score=218.78 Aligned_cols=235 Identities=17% Similarity=0.164 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHH-hhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHH
Q 009568 258 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL 336 (532)
Q Consensus 258 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l 336 (532)
.+-+..|+..|.+++...+ ....+.+.|+++.|+. +|.++++.++..|+++|++++.+++..++.+++.|+++.|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 4567888999999997644 5566888999999999 9999999999999999999999999888899999999999999
Q ss_pred hcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCCh
Q 009568 337 LTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCI 416 (532)
Q Consensus 337 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l 416 (532)
|.++.+..+++.|+|+|+|++.+++...+.+.+.|+++.|+.+|.++++.++..|+|+|++++.+ +++.+..+++.|++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence 98543789999999999999999999888999999999999999999999999999999999987 66788899999999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCC-CHHHHHHHHHHHHH
Q 009568 417 KPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHD-NNEIYEKAVKILET 495 (532)
Q Consensus 417 ~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~-~~~v~~~a~~il~~ 495 (532)
+.|+.+|.++++.++..++.+|.+|+...+........ ..+.+...+++ .++.++.++ +.++|++|..|+++
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~--~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~ 284 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE--PELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQT 284 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC--GGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhc--cHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999875543211000 12346777774 478888776 89999999999999
Q ss_pred hCCCCc
Q 009568 496 YWLEED 501 (532)
Q Consensus 496 ~~~~~~ 501 (532)
||++++
T Consensus 285 ~f~~~~ 290 (296)
T 1xqr_A 285 CFSSPA 290 (296)
T ss_dssp HCC---
T ss_pred HcCCCC
Confidence 997643
No 30
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=5.9e-26 Score=211.81 Aligned_cols=241 Identities=32% Similarity=0.466 Sum_probs=215.6
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 153 (532)
+.++.+++.|.++++.++..|++.|.+++... ......+++.|++|.|+++|.+++ ++++..|+++|.+++..+++.+
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHHH
Confidence 46899999999999999999999999999863 346777889999999999999988 9999999999999999879999
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (532)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~ 233 (532)
..+.+.|+++.|+.+|.++++.++..++++|++++...+..+..+.+.|+++.|+.++
T Consensus 80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l---------------------- 137 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL---------------------- 137 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT----------------------
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH----------------------
Confidence 9999999999999999999999999999999999987777777777666666666666
Q ss_pred CCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHh
Q 009568 234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313 (532)
Q Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl 313 (532)
.++++.++..++++|++++...+.....+.+.|+++.|+.++.++++.++..|+++|+++
T Consensus 138 --------------------~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 197 (252)
T 4hxt_A 138 --------------------TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 197 (252)
T ss_dssp --------------------TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred --------------------cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 335677788888888888877777777888999999999999999999999999999999
Q ss_pred hcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 009568 314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359 (532)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 359 (532)
+.+++.....+.+.|+++.|+.++.++ ++.++..|+|+|+|++..
T Consensus 198 ~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 198 ASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALENIKSG 242 (252)
T ss_dssp TTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHHHHcC
Confidence 998888888899999999999999998 999999999999999974
No 31
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=1.2e-26 Score=216.72 Aligned_cols=239 Identities=38% Similarity=0.573 Sum_probs=217.0
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 153 (532)
..++.++..|++++++++..|++.|+++++. ..+....+++.|++|.|+++|.+++ +.++..|+++|++++.++++.+
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence 4679999999999999999999999998886 3566788899999999999999998 9999999999999999899999
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (532)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~ 233 (532)
..+++.|+++.|+.+|.++++.++..|+|+|+|++.+.+.....+.+.|+++.|+.++ .+.++.++..++|+|.+|+..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999887765448888999999999999 677899999999999999987
Q ss_pred CC-CCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHH
Q 009568 234 KP-QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN 312 (532)
Q Consensus 234 ~~-~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~n 312 (532)
.+ ........+++|.|+.++.++++.++..++++|++++...+.....+.+.|+++.|+.++.++++.++..|+++|+|
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 52 22223347899999999999999999999999999998888888889999999999999999999999999999999
Q ss_pred hhc
Q 009568 313 IVT 315 (532)
Q Consensus 313 l~~ 315 (532)
|+.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 975
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=6e-24 Score=218.76 Aligned_cols=358 Identities=14% Similarity=0.118 Sum_probs=280.5
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 154 (532)
.++-|.+.+++ ..++..|+..|.++.+.... ....+. .+.+.++++|..++ .+-+..|++.|..++. .++.+.
T Consensus 297 ~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~-~~~si~--~La~~~~~~L~~~~-~~~~~~AvEgLaYLSl-~~~VKe 369 (778)
T 3opb_A 297 YLQLLERSLNV--EDVQIYSALVLVKTWSFTKL-TCINLK--QLSEIFINAISRRI-VPKVEMSVEALAYLSL-KASVKI 369 (778)
T ss_dssp HHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTC-TTCCHH--HHHHHHHHHTTTCC-HHHHHHHHHHHHHHTT-SSHHHH
T ss_pred HHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCC-CcCcHH--HHHHHHHHHHhcCC-ccHHHHHHHHHHHHhC-CHHHHH
Confidence 34556666654 47888999999999876422 111122 27788999998876 5669999999999998 677777
Q ss_pred HHHhC-CChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCch--------------------------------------h
Q 009568 155 VVIDH-GAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPR--------------------------------------C 194 (532)
Q Consensus 155 ~i~~~-g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~--------------------------------------~ 194 (532)
.+.+. |+++.|+.++++ .+..+.--++.+|.|++...+. .
T Consensus 370 ~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~ 449 (778)
T 3opb_A 370 MIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFN 449 (778)
T ss_dssp HHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHH
Confidence 77765 669999999985 6778889999999999863321 3
Q ss_pred HHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHH---HHHHHHHHHHHh
Q 009568 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEE---VLTDACWALSYL 271 (532)
Q Consensus 195 ~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~---v~~~a~~~L~~l 271 (532)
+..+.+.|+++.|+.++ .+.++.++..++|+|.+|+.+..........|+++.|+.++.+.... .+..|+++|.++
T Consensus 450 ~~~l~eaGvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL 528 (778)
T 3opb_A 450 EKYILRTELISFLKREM-HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM 528 (778)
T ss_dssp HHHTTTTTHHHHHHHHG-GGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 45677899999999999 77889999999999999998765555666689999999999877544 899999999999
Q ss_pred ccCChhHHHHHHH----hCchHHHHHhhCC-CCcc---------c----hhhHHHHHHHhhcCCc----chhHHHhhc-C
Q 009568 272 SDGTNDKIQAVIE----AGVCPRLVELLGH-PSPS---------V----LIPALRTVGNIVTGDD----FQTQCIITY-G 328 (532)
Q Consensus 272 ~~~~~~~~~~~~~----~~~l~~L~~lL~~-~~~~---------v----~~~al~~L~nl~~~~~----~~~~~~~~~-~ 328 (532)
+...+... ++. .+++++|+.+|.. +... . +..|+.+|.||+..++ ..+..++.. |
T Consensus 529 lis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~g 606 (778)
T 3opb_A 529 LIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKV 606 (778)
T ss_dssp HHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHH
T ss_pred HhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcC
Confidence 85443221 121 3889999999983 2211 1 6789999999999873 335667875 9
Q ss_pred chHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHH-HHHHHcC------CHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009568 329 ALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI-QAVIDAG------LVGPLVNLLQNAEFDIKKEAAWAISNATSG 401 (532)
Q Consensus 329 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~-~~l~~~~------~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 401 (532)
+++.|..+|.+. +..+|+.|+|+++|++.. ++.+ +.+.+.+ -++.|+.++..++.++|+.|+|+|.|++..
T Consensus 607 a~~~L~~LL~s~-n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 607 YWSTIENLMLDE-NVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHHHHHHGGGCS-SHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 999999999988 899999999999999974 4443 2443222 378899999999999999999999999754
Q ss_pred CCHHHHHHHHHc-CChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhh
Q 009568 402 GTHEQIKYLVRE-GCIKPLCDLFVC--PDPRIVTVCLEGLENILKVG 445 (532)
Q Consensus 402 ~~~~~~~~l~~~-~~l~~L~~lL~~--~d~~v~~~al~~L~~l~~~~ 445 (532)
.+..+..+++. ++++.++.++.. ++++++..++.++.|++...
T Consensus 685 -~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 685 -IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp -CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred -ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence 45666777776 799999999998 89999999999999999754
No 33
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.4e-24 Score=219.08 Aligned_cols=321 Identities=11% Similarity=0.110 Sum_probs=256.9
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhh-hCCcHHHHHHhhcC-CCCHHHHHHHHHHHHHHhcCChh-
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMR-EDYPQLQFEAAWALTNIASGTSE- 151 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i-~~g~i~~Lv~lL~~-~~~~~~~~~a~~~L~~l~~~~~~- 151 (532)
..+.+++.|.+++.+.+..|+..|..+... ......+. +.|+++.|+++++. .+ ..+.+.++.+|.|++...+.
T Consensus 335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl~--~~VKe~L~~d~~~L~~Lv~llk~~~d-~s~~Ygal~IL~NLt~~~~~~ 411 (778)
T 3opb_A 335 LSEIFINAISRRIVPKVEMSVEALAYLSLK--ASVKIMIRSNESFTEILLTMIKSQKM-THCLYGLLVIMANLSTLPEEX 411 (778)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHTTS--SHHHHHHHHCHHHHHHHHHHHTTTCC-TTHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhCC--HHHHHHHHhCHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCCccc
Confidence 467788888887777788999999998653 23333444 56779999999996 55 78999999999999873321
Q ss_pred -------------------------------------hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 009568 152 -------------------------------------NTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194 (532)
Q Consensus 152 -------------------------------------~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 194 (532)
.+..+++.|++|.|+.++.++++.+++.++|+|.|++.+ +..
T Consensus 412 ~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~ 490 (778)
T 3opb_A 412 XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNF 490 (778)
T ss_dssp CCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGG
T ss_pred chhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHH
Confidence 456778899999999999999999999999999999876 678
Q ss_pred HHHHHhcCChHHHHHHhhhhhhh--HHHHHHHHHhhhccCCC-CCCCc--ccccchHHHHHHhhcC-CCH----------
Q 009568 195 RDLVLSQGALIPLLAQLNERAKL--SMLRNATWTLSNFCRGK-PQPPF--DQVRPALPALAQLVHS-NDE---------- 258 (532)
Q Consensus 195 ~~~~~~~~~l~~L~~ll~~~~~~--~~~~~a~~~L~~L~~~~-~~~~~--~~~~~~l~~L~~lL~~-~d~---------- 258 (532)
|..+.+.|++++|+.++...... ..+..|+++|.+++... |...+ ....+++|.|+.+|.. +..
T Consensus 491 R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~ 570 (778)
T 3opb_A 491 IPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQ 570 (778)
T ss_dssp HHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCC
T ss_pred HHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccccc
Confidence 99999999999999999544333 37899999999998543 21111 1124899999999983 211
Q ss_pred ---HHHHHHHHHHHHhccCCh----hHHHHHHHh-CchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcC--
Q 009568 259 ---EVLTDACWALSYLSDGTN----DKIQAVIEA-GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYG-- 328 (532)
Q Consensus 259 ---~v~~~a~~~L~~l~~~~~----~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~-- 328 (532)
--+..|+.+|.||+..++ +....++.. |+++.|..+|.+++..++..|+++++||+...+...+.+.+.+
T Consensus 571 ~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~ 650 (778)
T 3opb_A 571 IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENP 650 (778)
T ss_dssp CCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSH
T ss_pred ccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCc
Confidence 127789999999998762 334667774 8999999999999999999999999999985543222343322
Q ss_pred ----chHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHHHhc--CchhHHHHHHHHHHHhhc
Q 009568 329 ----ALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDA-GLVGPLVNLLQN--AEFDIKKEAAWAISNATS 400 (532)
Q Consensus 329 ----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~ 400 (532)
.++.|+.++.+. +..+|+.|+|+|+|++.+++...+.+++. ++++.++.++.. ++++++..++.++.|++.
T Consensus 651 ~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 651 QSLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred hhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 378899999888 99999999999999988778878888876 799999999999 799999999999999996
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.92 E-value=3.8e-23 Score=187.13 Aligned_cols=198 Identities=40% Similarity=0.593 Sum_probs=185.5
Q ss_pred cchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhH
Q 009568 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ 322 (532)
Q Consensus 243 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~ 322 (532)
.+..+.|..++.++++.++..++|+|.+++...++....+.+.|+++.|+.+|.++++.++..|+++|+|++.+++....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 56788999999999999999999999999988888888999999999999999999999999999999999998888888
Q ss_pred HHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009568 323 CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG 402 (532)
Q Consensus 323 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 402 (532)
.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.++++....+++.|+++.|+.++.++++.++..|+++|.|++..
T Consensus 91 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~- 168 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG- 168 (210)
T ss_dssp HHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-
T ss_pred HHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-
Confidence 899999999999999999 999999999999999998899888999999999999999999999999999999999986
Q ss_pred CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 009568 403 THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL 442 (532)
Q Consensus 403 ~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~ 442 (532)
+++....+.+.|+++.|+.++.++++.++..++++|.++.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 4677788889999999999999999999999999999874
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.90 E-value=2.2e-22 Score=182.10 Aligned_cols=200 Identities=38% Similarity=0.583 Sum_probs=174.9
Q ss_pred hCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 009568 115 QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194 (532)
Q Consensus 115 ~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 194 (532)
..+..|.|+.+|.+++ ++++..|+|+|.+++.++++.+..+++.|+++.|+.+|.++++.++..|+|+|+|++.+.+..
T Consensus 10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 4578999999999988 999999999999999889999999999999999999999999999999999999999888877
Q ss_pred HHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 009568 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG 274 (532)
Q Consensus 195 ~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~ 274 (532)
+..+.+.|+++.|+.+| . ++++.++..++|+|++++..
T Consensus 89 ~~~i~~~g~i~~L~~lL-~-----------------------------------------~~~~~v~~~a~~~L~~l~~~ 126 (210)
T 4db6_A 89 IQAVIDAGALPALVQLL-S-----------------------------------------SPNEQILQEALWALSNIASG 126 (210)
T ss_dssp HHHHHHTTCHHHHHHHT-T-----------------------------------------CSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHCCCHHHHHHHH-c-----------------------------------------CCcHHHHHHHHHHHHHHHcC
Confidence 88777777777777776 3 34555666666666666666
Q ss_pred ChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHH
Q 009568 275 TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS 354 (532)
Q Consensus 275 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 354 (532)
.+.....+++.|+++.|+.+|.++++.++..|+++|+|++..++.....+.+.|+++.|+.++.++ ++.+++.|+|+|.
T Consensus 127 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~ 205 (210)
T 4db6_A 127 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALE 205 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 666667788899999999999999999999999999999998888888899999999999999988 9999999999999
Q ss_pred HHhc
Q 009568 355 NITA 358 (532)
Q Consensus 355 nl~~ 358 (532)
+++.
T Consensus 206 ~l~~ 209 (210)
T 4db6_A 206 KLQS 209 (210)
T ss_dssp HHCC
T ss_pred HHhc
Confidence 9974
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.90 E-value=2.5e-22 Score=188.96 Aligned_cols=226 Identities=16% Similarity=0.133 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHH
Q 009568 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQ 210 (532)
Q Consensus 132 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~l 210 (532)
.+-+..|+..|.+++. +.++...+++.|+++.|+. +|.++++.+++.|+|+|++++.+++.+++.+++.|++++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 4678899999999998 6678888999999999999 9999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHhhhccCCCCC-CCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchH
Q 009568 211 LNERAKLSMLRNATWTLSNFCRGKPQ-PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 289 (532)
Q Consensus 211 l~~~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 289 (532)
|..+.+..+++.++|+|++++++.+. .......+++|.|+.+|.+++..++..++|+|++++.+.++.+..+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 95455789999999999999998632 23334468999999999999999999999999999988888889999999999
Q ss_pred HHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhh--cCchHHH---HHHhcCCC-chhHHHHHHHHHHHHhc
Q 009568 290 RLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT--YGALPYL---LGLLTHSH-KKSIKKEACWTISNITA 358 (532)
Q Consensus 290 ~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~--~~~l~~L---~~lL~~~~-~~~v~~~a~~~L~nl~~ 358 (532)
.|+.+|.+++..++..|+++|++|+.+.+......-. ..+...| ..-++..+ ..++.+.|..++-++..
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999875433222111 1111212 23333221 34566666666666654
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.85 E-value=7.6e-21 Score=170.90 Aligned_cols=197 Identities=19% Similarity=0.140 Sum_probs=170.6
Q ss_pred cHHHHHHhhcCCCCH--HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 009568 118 VVPRFVEFLMREDYP--QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195 (532)
Q Consensus 118 ~i~~Lv~lL~~~~~~--~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 195 (532)
.+|.++++|.+++ + +++..|+++|.+++.++++.+..+++.|+||.|+++|.++++.+++.|+|+|.||+.+++..+
T Consensus 9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 5899999999988 6 899999999999998889999999999999999999999999999999999999999888899
Q ss_pred HHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc----------------CCCHH
Q 009568 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH----------------SNDEE 259 (532)
Q Consensus 196 ~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~----------------~~d~~ 259 (532)
..+.+.|++++|+.+|..+.+.++++.++.+|++|+...... .....+++|.|+.++. ..++.
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 999999999999999954568899999999999999765332 2334567888887652 13679
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHh-CchHHHHHhhCC------CCccchhhHHHHHHHhhcC
Q 009568 260 VLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLGH------PSPSVLIPALRTVGNIVTG 316 (532)
Q Consensus 260 v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~ 316 (532)
++.++.++|.|++..+++..+.+.+. |+++.|+.+++. .+...++.|+.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998776777777765 678999999864 3567889999999999864
No 38
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.83 E-value=3.2e-20 Score=166.89 Aligned_cols=197 Identities=18% Similarity=0.193 Sum_probs=165.2
Q ss_pred ccHHHHHhhhcCCCh--HHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009568 74 ESLPAMVAGVWSDDS--SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE 151 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~--~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~ 151 (532)
..+|.+++.|+++++ +++..|+..++++.... .+....+++.|+||.|+++|.+++ +++|..|+|+|.||+.++++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHH
Confidence 378999999999998 88999999999988753 456777889999999999999988 99999999999999998899
Q ss_pred hHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh---------------hh
Q 009568 152 NTKVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE---------------RA 215 (532)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~---------------~~ 215 (532)
++..+.+.|+||.|+++|. +++..++++++.+|+|++... ..+..+.+. ++++|+.++.. ..
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~-~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~ 163 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-KLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLL 163 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG-GGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh-hhHHHHHhc-cHHHHHHHHhccccCCcccccccccccc
Confidence 9999999999999999997 578999999999999998754 456666664 68999886631 12
Q ss_pred hhHHHHHHHHHhhhccCCC-CCCCccc-ccchHHHHHHhhcC------CCHHHHHHHHHHHHHhccC
Q 009568 216 KLSMLRNATWTLSNFCRGK-PQPPFDQ-VRPALPALAQLVHS------NDEEVLTDACWALSYLSDG 274 (532)
Q Consensus 216 ~~~~~~~a~~~L~~L~~~~-~~~~~~~-~~~~l~~L~~lL~~------~d~~v~~~a~~~L~~l~~~ 274 (532)
++.++.+++++|.||+... ....... ..|+++.|+.+++. .+...+++++.+|.||+..
T Consensus 164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 5689999999999999865 3333332 35789999999874 2668899999999999854
No 39
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.79 E-value=6.2e-18 Score=177.55 Aligned_cols=342 Identities=11% Similarity=0.132 Sum_probs=249.2
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hhH
Q 009568 117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP-RCR 195 (532)
Q Consensus 117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~ 195 (532)
.++|.+..++.+++ ..+|..|+.+|+.++..... ......+++.++.++.++++.+|..++++|+.++...+ ..+
T Consensus 242 ~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 317 (588)
T 1b3u_A 242 LVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCR 317 (588)
T ss_dssp HTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTH
T ss_pred HHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhh
Confidence 36677777777666 67888888888887752111 11223567888889988889999999999999875432 111
Q ss_pred HHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 009568 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT 275 (532)
Q Consensus 196 ~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~ 275 (532)
.......+++.+..++ .+.+..++..++++|..++..-.. ......++|.+..++.+++++++..++.++..+....
T Consensus 318 ~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 394 (588)
T 1b3u_A 318 ENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPILGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 394 (588)
T ss_dssp HHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHHCH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS
T ss_pred hhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhc
Confidence 1122234567777777 677889999999999999854211 1123457888999999989999999999998887532
Q ss_pred hhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 009568 276 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN 355 (532)
Q Consensus 276 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 355 (532)
... .....++|.+..++.+.++.++..++.+++.++...... .....+++.+...|.++ +..+|..|+.+++.
T Consensus 395 ~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~ 467 (588)
T 1b3u_A 395 GIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKK 467 (588)
T ss_dssp CHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred CHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHH
Confidence 211 122367888999999999999999999999998532211 12234678899999888 89999999999999
Q ss_pred HhcC-CHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHH
Q 009568 356 ITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVC 434 (532)
Q Consensus 356 l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~a 434 (532)
++.. .++ .....++|.|..++.+.++.+|..++++++.++.....+ .....+++.|..+++++++.++..+
T Consensus 468 l~~~~~~~----~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a 539 (588)
T 1b3u_A 468 LVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNV 539 (588)
T ss_dssp HHHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHhCch----hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHH
Confidence 9862 122 112347888988888889999999999999997642222 1223589999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009568 435 LEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETY 496 (532)
Q Consensus 435 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~ 496 (532)
+++|..+....... +. ....+..|..+..+++++|+..|...+..+
T Consensus 540 ~~~l~~l~~~~~~~------------~~----~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 540 AKSLQKIGPILDNS------------TL----QSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHGGGSCHH------------HH----HHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhchh------------hh----HHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 99999998643211 11 133457788889999999999999999876
No 40
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.78 E-value=3e-18 Score=187.83 Aligned_cols=354 Identities=14% Similarity=0.150 Sum_probs=260.1
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009568 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV 155 (532)
Q Consensus 76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 155 (532)
-+.+++.|.++++.++..++.++..++..+ .+. ...+++|.|++.+.+++ +.++..|+.+|+.++...+.....
T Consensus 92 k~~ll~~l~~~~~~vr~~~a~~i~~ia~~~--~~~---~wp~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~ 165 (852)
T 4fdd_A 92 KSECLNNIGDSSPLIRATVGILITTIASKG--ELQ---NWPDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDS 165 (852)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHHHT--TTT---TCTTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhc--Ccc---ccHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhch
Confidence 356777888888999999999999998863 111 23568999999999988 899999999999998743332111
Q ss_pred HH----hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhcc
Q 009568 156 VI----DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC 231 (532)
Q Consensus 156 i~----~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~ 231 (532)
-. -..+++.|++++.++++.+|..|+++|++++...+..-.. .-..+++.++..+ .+.++.++..++++|..++
T Consensus 166 ~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~ 243 (852)
T 4fdd_A 166 DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML-HIDSFIENLFALA-GDEEPEVRKNVCRALVMLL 243 (852)
T ss_dssp CSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHT-SHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHH
Confidence 00 1235677888888899999999999999887654321100 0113466677766 6678899999999999999
Q ss_pred CCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHH---hCchHHHHHhh-----------CC
Q 009568 232 RGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIE---AGVCPRLVELL-----------GH 297 (532)
Q Consensus 232 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~---~~~l~~L~~lL-----------~~ 297 (532)
...+..-......+++.+..++.+.++.++..+++++..++..... ...+. ..+++.++..+ .+
T Consensus 244 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~--~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d 321 (852)
T 4fdd_A 244 EVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC--KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGD 321 (852)
T ss_dssp HHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH--HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-
T ss_pred HhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCC
Confidence 8653322233457888888999999999999999999999865321 11221 14566666666 33
Q ss_pred -----------CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009568 298 -----------PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQA 366 (532)
Q Consensus 298 -----------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 366 (532)
.++.++..|..+|+.++...+.. ++. .+++.+...+.++ ++.+|..|+++|++++.+..+.+..
T Consensus 322 ~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~~-~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~ 396 (852)
T 4fdd_A 322 VEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LLP-HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIP 396 (852)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHHHGGG---GHH-HHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGG
T ss_pred cccccccccccccchHHHHHHHHHHHHHHhccHH---HHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHH
Confidence 34567899999999998654321 222 4678888888888 9999999999999999987765554
Q ss_pred HHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHH-HHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568 367 VIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHE-QIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG 445 (532)
Q Consensus 367 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~-~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (532)
.+ .++++.++..+.+.++.||..|+|++++++...... ...+ -.++++.|+..+.++++.++..++++|.+++...
T Consensus 397 ~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~--~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 397 YL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTT--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 43 347899999999999999999999999998632110 0011 1246788888998899999999999999998765
Q ss_pred hh
Q 009568 446 EA 447 (532)
Q Consensus 446 ~~ 447 (532)
..
T Consensus 474 ~~ 475 (852)
T 4fdd_A 474 CT 475 (852)
T ss_dssp GG
T ss_pred hH
Confidence 43
No 41
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.77 E-value=1.5e-17 Score=174.00 Aligned_cols=333 Identities=17% Similarity=0.177 Sum_probs=233.5
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 154 (532)
.++.+.+.|+++++.++..|+..+.++.. +. +...++|.+.+++.+++ +.+|..|+++++++...+++...
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~----~~----~~~~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~~ 157 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIRV----DK----ITEYLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMVE 157 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCCS----GG----GHHHHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCh----HH----HHHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhcc
Confidence 34556666777777777777777766542 11 11235778999999887 99999999999999986665432
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (532)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~ 234 (532)
+.++++.|..+|.++++.++..|+++|+.++.+.+..+......+.+..|+..+ ...++-.+..++.++..++...
T Consensus 158 ---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~~ 233 (591)
T 2vgl_B 158 ---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPKD 233 (591)
T ss_dssp ---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCCS
T ss_pred ---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCCC
Confidence 246789999999999999999999999999987663210111112355666666 4556777777888887777432
Q ss_pred CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC---ChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHH
Q 009568 235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 311 (532)
Q Consensus 235 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~ 311 (532)
......+++.+..++++.++.|+..|++++.++... +++....+. ..+.+.|+.++. +++.++..|+.+|+
T Consensus 234 ----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~ 307 (591)
T 2vgl_B 234 ----DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNIN 307 (591)
T ss_dssp ----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHH
Confidence 223457888888899999999999999999998742 233334333 356677776654 78899999999999
Q ss_pred HhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHH
Q 009568 312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEA 391 (532)
Q Consensus 312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 391 (532)
.++...+..... .+..+. .+.+. +..+|..|++++.+++... .+.. +++.|..++.+.+.++|..+
T Consensus 308 ~i~~~~p~~~~~-----~~~~~~-~~~~d-~~~Ir~~al~~L~~l~~~~--nv~~-----iv~~L~~~l~~~d~~~r~~~ 373 (591)
T 2vgl_B 308 LIVQKRPEILKQ-----EIKVFF-VKYND-PIYVKLEKLDIMIRLASQA--NIAQ-----VLAELKEYATEVDVDFVRKA 373 (591)
T ss_dssp HHHHHCCSTTTT-----CTTTTS-CCTTS-CHHHHHHHHHHHHHTCCSS--THHH-----HHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHhChHHHHH-----HHHhhe-eccCC-hHHHHHHHHHHHHHHCChh--hHHH-----HHHHHHHHHhcCCHHHHHHH
Confidence 998765532211 111121 12234 5788999999999887532 2222 45667778877888899999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 009568 392 AWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGE 446 (532)
Q Consensus 392 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 446 (532)
+++|++++.... .... .+++.|++++...+..++..++.++..+++..+
T Consensus 374 v~aI~~la~~~~-~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p 422 (591)
T 2vgl_B 374 VRAIGRCAIKVE-QSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP 422 (591)
T ss_dssp HHHHHHHHTTCH-HHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhCh-hHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHHHHHCc
Confidence 999999887643 2222 257888888888888888888888888876543
No 42
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.77 E-value=2.1e-17 Score=181.12 Aligned_cols=393 Identities=14% Similarity=0.126 Sum_probs=278.2
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009568 77 PAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVV 156 (532)
Q Consensus 77 ~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i 156 (532)
..++..+.+.++.+|..|+..|++.+... ...+..-....+-+.+++.|.+++ +.+|..++.+++.++......
T Consensus 51 ~~il~~~~~~~~~vR~~a~~~Lkn~i~~~-w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~---- 124 (852)
T 4fdd_A 51 IFVLTKLKSEDEPTRSLSGLILKNNVKAH-FQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQ---- 124 (852)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHTTTS-GGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTT----
T ss_pred HHHHhccCCCChHHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCcc----
Confidence 44444446778999999999999998642 222222233446677788888777 899999999999998733110
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH----hcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568 157 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVL----SQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (532)
Q Consensus 157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~----~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~ 232 (532)
.-.+.++.|+..+.++++.+++.++.+|+.++.+.+.....-. -..+++.++..+ .+.++.++..+++++..+..
T Consensus 125 ~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~~~ 203 (852)
T 4fdd_A 125 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQFII 203 (852)
T ss_dssp TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTTTT
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHh
Confidence 0135689999999999999999999999999865433211000 012455556656 56788999999999998886
Q ss_pred CCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHH
Q 009568 233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN 312 (532)
Q Consensus 233 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~n 312 (532)
..+.........+++.+..++.++++.++..++++|..++...++.....+. ++++.+...+.+.++.++..|+.++..
T Consensus 204 ~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~ 282 (852)
T 4fdd_A 204 SRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLT 282 (852)
T ss_dssp TTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 5432222234578888889999999999999999999999776655443333 578888888999999999999999999
Q ss_pred hhcCCcchhHHHhh---cCchHHHHHHh-----------cC--C--------CchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009568 313 IVTGDDFQTQCIIT---YGALPYLLGLL-----------TH--S--------HKKSIKKEACWTISNITAGNRDQIQAVI 368 (532)
Q Consensus 313 l~~~~~~~~~~~~~---~~~l~~L~~lL-----------~~--~--------~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 368 (532)
++.... .. ..+. ..++|.++..+ .+ . .+..+|+.|+.+|+.++...++ .++
T Consensus 283 l~~~~~-~~-~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~ 357 (852)
T 4fdd_A 283 LAEQPI-CK-DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELL 357 (852)
T ss_dssp HTTSTT-HH-HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGH
T ss_pred Hhcchh-HH-HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHH
Confidence 986432 11 1222 14566666666 22 0 1346799999999999863222 122
Q ss_pred HcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 009568 369 DAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAE 448 (532)
Q Consensus 369 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~ 448 (532)
. .+++.+...+.+.++.+|..|+++|++++.+.......+ -.++++.++.+++++++.|+..+++++.++.......
T Consensus 358 ~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~--l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 434 (852)
T 4fdd_A 358 P-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY--LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ 434 (852)
T ss_dssp H-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG--HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHS
T ss_pred H-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 2 257788888888899999999999999998754322222 2357899999999999999999999999988754331
Q ss_pred hhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009568 449 KNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 498 (532)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 498 (532)
. ...|.. +.++.+.....++++.|+..|.+.+..+..
T Consensus 435 ~--------~~~~~~-----~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 435 P--------PDTYLK-----PLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp C--------TTTTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred h--------HHHHHH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 1 111222 234556666667899999999999988764
No 43
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.77 E-value=2.1e-17 Score=173.44 Aligned_cols=381 Identities=12% Similarity=0.099 Sum_probs=284.5
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 154 (532)
.++.+...+.++++.++..|+..|..++..- +. ......++|.|..++++++ +.+|..|+.+|..++...+..
T Consensus 165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~--~~--~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~-- 237 (588)
T 1b3u_A 165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVL--EL--DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE-- 237 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS--CH--HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH--
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--cH--HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH--
Confidence 3566667778888999999999999988642 11 1223468899999998887 899999999999988633221
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (532)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~ 234 (532)
.....++|.+..++.++++.+|..++.+|+.++..... ......+++.++.++ .+.++.++..++++|..++...
T Consensus 238 -~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~ 312 (588)
T 1b3u_A 238 -DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENL 312 (588)
T ss_dssp -HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTS
T ss_pred -HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHh
Confidence 12234678888899889999999999999999743211 112334678888888 6778899999999999998764
Q ss_pred CCCCc--ccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHH
Q 009568 235 PQPPF--DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN 312 (532)
Q Consensus 235 ~~~~~--~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~n 312 (532)
+.... .....++|.+..++.++++.++..++++++.++...... .....+++.+..++.++++.++..++.+++.
T Consensus 313 ~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~ 389 (588)
T 1b3u_A 313 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDC 389 (588)
T ss_dssp CTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred ChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 32211 345678899999999999999999999999987432211 1223578889999999999999999999998
Q ss_pred hhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhcCchhHHHHH
Q 009568 313 IVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEA 391 (532)
Q Consensus 313 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 391 (532)
++...... .....++|.+..++.+. ++.+|..++.+++.++.. ..+ .....++|.+..++.+++..+|..|
T Consensus 390 l~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a 461 (588)
T 1b3u_A 390 VNEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAA 461 (588)
T ss_dssp HHHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred HHHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 88643311 12235788899999887 899999999999998751 111 1112357888888998899999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccH
Q 009568 392 AWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGL 471 (532)
Q Consensus 392 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 471 (532)
+.+++.++....++. ....+++.|..++.++++.++..+++++..+....... .|. ...+
T Consensus 462 ~~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~-----------~~~-----~~~~ 521 (588)
T 1b3u_A 462 TSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD-----------ITT-----KHML 521 (588)
T ss_dssp HHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH-----------HHH-----HHTH
T ss_pred HHHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH-----------HHH-----HHHH
Confidence 999999987433332 12357888989899999999999999999987653221 122 2346
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009568 472 EKIENLQSHDNNEIYEKAVKILETYWL 498 (532)
Q Consensus 472 ~~l~~L~~~~~~~v~~~a~~il~~~~~ 498 (532)
+.+..+..+++++|+..+.+.+..++.
T Consensus 522 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 522 PTVLRMAGDPVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHhhCCCCCchHHHHHHHHHHHHHH
Confidence 778888889999999999999988775
No 44
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.75 E-value=4.1e-15 Score=149.43 Aligned_cols=414 Identities=14% Similarity=0.156 Sum_probs=291.0
Q ss_pred ccHHHHHhhhcC--CChHHHHHHHHHHHHHhcCCCCCc----------------hhHhh-hCCcHHHHHHhhcCCCCHHH
Q 009568 74 ESLPAMVAGVWS--DDSSLQLEATTQFRKLLSIERSPP----------------IEEVI-QSGVVPRFVEFLMREDYPQL 134 (532)
Q Consensus 74 ~~l~~lv~~L~s--~~~~~~~~a~~~l~~l~~~~~~~~----------------~~~~i-~~g~i~~Lv~lL~~~~~~~~ 134 (532)
.+++.++..|+. .|.++...++..|..+++....+. .+.++ +.+.++.|+.+|+..+ ..+
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~v 138 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHV 138 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHH
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHH
Confidence 478999999986 477888889999988887542211 12333 5688999999999988 899
Q ss_pred HHHHHHHHHHHhcCChh-hHHHHHhC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhh
Q 009568 135 QFEAAWALTNIASGTSE-NTKVVIDH-GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN 212 (532)
Q Consensus 135 ~~~a~~~L~~l~~~~~~-~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~ 212 (532)
|..++.+|..++...++ ..+.+... ++++.|+.+|++..+.+|..++..|.+++.+++..++.+.-.|+++.|+.++.
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999987777 67777754 99999999999999999999999999999999999999999999999999995
Q ss_pred hhh---hhHHHHHHHHHhhhccCCCC-CCCcccccchHHHHHHhhcCCCH------HHHHH---HHHHHHHhccCC----
Q 009568 213 ERA---KLSMLRNATWTLSNFCRGKP-QPPFDQVRPALPALAQLVHSNDE------EVLTD---ACWALSYLSDGT---- 275 (532)
Q Consensus 213 ~~~---~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~l~~L~~lL~~~d~------~v~~~---a~~~L~~l~~~~---- 275 (532)
... ...+...|+.++.+|.+.++ +.......+++|.|.+++..+++ ....+ ++.++.-++...
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~ 298 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG 298 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 332 23688899999999999973 44444457888999998875432 23333 555555555442
Q ss_pred --hhHHHHHHHhCchHHHHHhhCCC--CccchhhHHHHHHHhhcCCcchhHHHhhcC---------chHHHHHHhcCCCc
Q 009568 276 --NDKIQAVIEAGVCPRLVELLGHP--SPSVLIPALRTVGNIVTGDDFQTQCIITYG---------ALPYLLGLLTHSHK 342 (532)
Q Consensus 276 --~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~al~~L~nl~~~~~~~~~~~~~~~---------~l~~L~~lL~~~~~ 342 (532)
..+...+.+.|+++.|+.++..+ ...++..|+.+++.++.+++.....+.... ++..|+.++.+...
T Consensus 299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~ 378 (651)
T 3grl_A 299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP 378 (651)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence 23456688999999999998765 457889999999999999987666554322 33334444655546
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHc----------CCH---HHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHH
Q 009568 343 KSIKKEACWTISNITAGNRDQIQAVIDA----------GLV---GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKY 409 (532)
Q Consensus 343 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~----------~~i---~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 409 (532)
..+|..|+.++..+..++++....++.. +.+ ..|+..+-+.|+--..-|+.++.++... +++....
T Consensus 379 ~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~-n~~~K~~ 457 (651)
T 3grl_A 379 FVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE-NATQKEQ 457 (651)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC-CHHHHHH
Confidence 7899999999999999887655555432 111 1344555556665556688888888876 4444443
Q ss_pred HHH--------c---CChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHH
Q 009568 410 LVR--------E---GCIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENL 477 (532)
Q Consensus 410 l~~--------~---~~l~~L~~lL~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L 477 (532)
+.. . -.++.+..+|. ..++.+....|-.|...+..+.. .....+.+...+..|-..
T Consensus 458 ~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~------------AV~dFL~~~s~l~~L~~~ 525 (651)
T 3grl_A 458 LLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPI------------AVTHFLHNSANVPFLTGQ 525 (651)
T ss_dssp HTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHH------------HHHHHHHSTTHHHHHHHH
T ss_pred HHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChH------------HHHHHHcCCchHHHHHHH
Confidence 333 1 12445556554 35666666666666655544332 234555555556666654
Q ss_pred h-cC-C--CHHHHHHHHHHHHHhCCCCc
Q 009568 478 Q-SH-D--NNEIYEKAVKILETYWLEED 501 (532)
Q Consensus 478 ~-~~-~--~~~v~~~a~~il~~~~~~~~ 501 (532)
. ++ . +.-|+-.|.-++--.|...+
T Consensus 526 i~~~~~~~~~lvqGL~a~LLGi~yef~~ 553 (651)
T 3grl_A 526 IAENLGEEEQLVQGLCALLLGISIYFND 553 (651)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHhccCcchHHHHHHHHHHHHHHhhccC
Confidence 3 22 2 23477788777777655443
No 45
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.72 E-value=1.9e-15 Score=157.89 Aligned_cols=332 Identities=16% Similarity=0.140 Sum_probs=247.4
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 153 (532)
..++.+++.+++++..++..+...+..++.. .+.. . .-+++.+.+-|++++ +.+|..|+.+|+++.. ++..
T Consensus 49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~e~--~--~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~ 119 (591)
T 2vgl_B 49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKS--QPDM--A--IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKIT 119 (591)
T ss_dssp GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--SHHH--H--HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--CchH--H--HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHH
Confidence 3578899999999999998888888887653 1111 1 125678888899888 9999999999999863 5554
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (532)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~ 233 (532)
..+ ++.+.+++.++++.+|..|++++++++...+.. +...+.++.+..+| .+.++.++..|+++|..++..
T Consensus 120 ~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 120 EYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISES 190 (591)
T ss_dssp HHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTS
T ss_pred HHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhh
Confidence 444 478999999999999999999999998765542 22235678888888 688999999999999999987
Q ss_pred CCCC-CcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHH
Q 009568 234 KPQP-PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN 312 (532)
Q Consensus 234 ~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~n 312 (532)
.+.. ........++.|+..+...++..+..++.++..++...+... ..+++.+..++.+.++.++..|++++..
T Consensus 191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~ 265 (591)
T 2vgl_B 191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMK 265 (591)
T ss_dssp CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 6433 233445667788888888899999999999998885544332 2567888889999999999999999999
Q ss_pred hhcC---CcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHH
Q 009568 313 IVTG---DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKK 389 (532)
Q Consensus 313 l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 389 (532)
+... +++..+.+. ..+.+.|+.++. + ++.+|..|+.+|+.++...++.+.. .+..+. .+.+++..+|.
T Consensus 266 l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~-----~~~~~~-~~~~d~~~Ir~ 336 (591)
T 2vgl_B 266 FLELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQ-----EIKVFF-VKYNDPIYVKL 336 (591)
T ss_dssp SCCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTT-----CTTTTS-CCTTSCHHHHH
T ss_pred HhhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHH-----HHHhhe-eccCChHHHHH
Confidence 9753 233333332 355677776664 6 8999999999999998744432211 111222 22234588999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568 390 EAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG 445 (532)
Q Consensus 390 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (532)
.|++.|.+++...+. .. +++.|..++++.|.+++..++++|..+....
T Consensus 337 ~al~~L~~l~~~~nv---~~-----iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~ 384 (591)
T 2vgl_B 337 EKLDIMIRLASQANI---AQ-----VLAELKEYATEVDVDFVRKAVRAIGRCAIKV 384 (591)
T ss_dssp HHHHHHHHTCCSSTH---HH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCChhhH---HH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC
Confidence 999999999875442 22 5667778888889999998888888877543
No 46
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.72 E-value=3.1e-16 Score=148.20 Aligned_cols=257 Identities=14% Similarity=0.131 Sum_probs=201.8
Q ss_pred hCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 009568 115 QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194 (532)
Q Consensus 115 ~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 194 (532)
..+.++.|+..|.+++ +.++..|+++|+++.. + ++++.|+.++.++++.++..++++|+.+.......
T Consensus 21 ~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~ 88 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE 88 (280)
T ss_dssp HTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred HHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence 4568999999999887 9999999999999873 2 35788999999999999999999999986432221
Q ss_pred HHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 009568 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG 274 (532)
Q Consensus 195 ~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~ 274 (532)
.. .++.|...+..+.++.++..++++|..+....+ ......++.|..++.++++.++..++++|+++..
T Consensus 89 ~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~- 157 (280)
T 1oyz_A 89 DN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND- 157 (280)
T ss_dssp HH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred hH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-
Confidence 11 123333333366789999999999999975421 1234678999999999999999999999998753
Q ss_pred ChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHH
Q 009568 275 TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS 354 (532)
Q Consensus 275 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 354 (532)
.+.++.|+.++.++++.++..|+++|+.+....+ .+++.|..++.++ ++.+|..|+++|+
T Consensus 158 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL~ 217 (280)
T 1oyz_A 158 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGLS 217 (280)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 2578999999999999999999999999853322 3567899999988 9999999999999
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC-CCHHHHHH
Q 009568 355 NITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC-PDPRIVTV 433 (532)
Q Consensus 355 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~d~~v~~~ 433 (532)
++. + ...++.|+..+.++ +++..|+++|+.+.. + .+++.|..++.. ++++++..
T Consensus 218 ~~~--~---------~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~---~---------~~~~~L~~~l~~~~~~~~~~~ 272 (280)
T 1oyz_A 218 YRK--D---------KRVLSVLCDELKKN--TVYDDIIEAAGELGD---K---------TLLPVLDTMLYKFDDNEIITS 272 (280)
T ss_dssp HTT--C---------GGGHHHHHHHHTSS--SCCHHHHHHHHHHCC---G---------GGHHHHHHHHTTSSCCHHHHH
T ss_pred HhC--C---------HhhHHHHHHHhcCc--cHHHHHHHHHHhcCc---h---------hhhHHHHHHHhcCCCcHHHHH
Confidence 986 2 23678888888764 499999999999843 1 468888888864 67778877
Q ss_pred HHHHHH
Q 009568 434 CLEGLE 439 (532)
Q Consensus 434 al~~L~ 439 (532)
+++.|.
T Consensus 273 ~~~~l~ 278 (280)
T 1oyz_A 273 AIDKLK 278 (280)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 777664
No 47
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.70 E-value=1.3e-14 Score=145.69 Aligned_cols=368 Identities=15% Similarity=0.151 Sum_probs=271.8
Q ss_pred ccHHHHHhhhcCCC-hHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCChh
Q 009568 74 ESLPAMVAGVWSDD-SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-DYPQLQFEAAWALTNIASGTSE 151 (532)
Q Consensus 74 ~~l~~lv~~L~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~-~~~~~~~~a~~~L~~l~~~~~~ 151 (532)
+.++.|+..+.+.. .+-|..|+..|+.+... ....+..+++|.|+..|+.+ ++.++...++.+|.++...+++
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~-----y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKK-----YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT-----TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHH-----hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 57889999888554 77899999999999643 22334466899999999864 3478888999999887764432
Q ss_pred -----------------hHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch-hHHHHHhc-CChHHHHHHh
Q 009568 152 -----------------NTKVVI-DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR-CRDLVLSQ-GALIPLLAQL 211 (532)
Q Consensus 152 -----------------~~~~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~~-~~l~~L~~ll 211 (532)
..+.++ +.+.++.|+.+|++.+..+|..++.+|..++...+. .++.++.. ++++.|+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 223333 457899999999999999999999999999987776 77778754 8999999999
Q ss_pred hhhhhhHHHHHHHHHhhhccCCCCCCCc-ccccchHHHHHHhhcCCC----HHHHHHHHHHHHHhccCChhHHHHHHHhC
Q 009568 212 NERAKLSMLRNATWTLSNFCRGKPQPPF-DQVRPALPALAQLVHSND----EEVLTDACWALSYLSDGTNDKIQAVIEAG 286 (532)
Q Consensus 212 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~lL~~~d----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 286 (532)
.+....++..++..|.+|+++.+..+. ....++++.|+.++.... ..+..+++.++.+|...+..+...+.+.+
T Consensus 176 -~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~ 254 (651)
T 3grl_A 176 -ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS 254 (651)
T ss_dssp -GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred -hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 666788999999999999999744433 445799999999998654 37899999999999999888888899999
Q ss_pred chHHHHHhhCCCCcc------c---hhhHHHHHHHhhcCCc------chhHHHhhcCchHHHHHHhcCCC-chhHHHHHH
Q 009568 287 VCPRLVELLGHPSPS------V---LIPALRTVGNIVTGDD------FQTQCIITYGALPYLLGLLTHSH-KKSIKKEAC 350 (532)
Q Consensus 287 ~l~~L~~lL~~~~~~------v---~~~al~~L~nl~~~~~------~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~ 350 (532)
.++.|..+|..++.. . ...++.++.-++.... .....+.++|+++.|++++..+. ...++.+|.
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al 334 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI 334 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence 999999999754322 1 2226667777776532 34557789999999999987542 457999999
Q ss_pred HHHHHHhcCCHHHHHHHHHcC---------CHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHc----C--
Q 009568 351 WTISNITAGNRDQIQAVIDAG---------LVGPLVNLLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVRE----G-- 414 (532)
Q Consensus 351 ~~L~nl~~~~~~~~~~l~~~~---------~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~----~-- 414 (532)
.+++.+..+++.....+.+.. ++..|+.++.+. ..++|..|+.++..+..+.. +....++.. .
T Consensus 335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~-~~Q~~i~~~llp~~~~ 413 (651)
T 3grl_A 335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQ-KGQGEIVSTLLPSTID 413 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTSSCCCC
T ss_pred HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCH-HHHHHHHHhcCCcccc
Confidence 999999999988777776532 233344444443 57899999999999998743 322233321 0
Q ss_pred ----Ch---HHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 009568 415 ----CI---KPLCDLFVCPDPRIVTVCLEGLENILKVGEAE 448 (532)
Q Consensus 415 ----~l---~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~ 448 (532)
.+ ..++.-+-+.|+.-.-.+.-++..++......
T Consensus 414 ~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~ 454 (651)
T 3grl_A 414 ATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQ 454 (651)
T ss_dssp CTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred cCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHH
Confidence 11 12344455567754445666677777665543
No 48
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.68 E-value=5e-15 Score=155.34 Aligned_cols=227 Identities=16% Similarity=0.102 Sum_probs=153.8
Q ss_pred hcCCCCCchHHhhhhhHHHHHHHHHhhHHHHHhhh-------hhccCCCCCCCCCCCccchhhhhhccHHHHHhhhcCCC
Q 009568 15 RYKVAVDADEGRRRREDNMVEIRKNKREESLLKKR-------REGLQSQQFPPPAPASNLNLQTKLESLPAMVAGVWSDD 87 (532)
Q Consensus 15 ~~k~~~~~~~~~~~r~~~~~~~Rk~~r~~~~~~~r-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~s~~ 87 (532)
..++.++.++.+++-.....+||+.-++..-.+|+ -..+.+.+. -.....+++.+.+++
T Consensus 18 ~ir~~~~~~~e~~~i~~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~--------------~~~~~~vik~~~s~~ 83 (618)
T 1w63_A 18 TIRTARTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPA--------------HFGQLECLKLIASQK 83 (618)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCC--------------GGGHHHHHHHHHSSS
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCC--------------cchHHHHHHHHcCCc
Confidence 33445555666666666677777665433221111 111111110 135678888889999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 009568 88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK 167 (532)
Q Consensus 88 ~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ 167 (532)
...+..+.-.+..++.. ++.. ++ -+++.|.+-|++++ +.++..|+++|+++.. ++... .+++.+..
T Consensus 84 ~~~Krl~Yl~~~~~~~~--~~e~--~~--l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~~~~-----~l~~~l~~ 149 (618)
T 1w63_A 84 FTDKRIGYLGAMLLLDE--RQDV--HL--LMTNCIKNDLNHST-QFVQGLALCTLGCMGS--SEMCR-----DLAGEVEK 149 (618)
T ss_dssp HHHHHHHHHHHHHHCCC--CHHH--HH--HHHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HHHHH-----HHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC--CcHH--HH--HHHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HHHHH-----HHHHHHHH
Confidence 98888888888888753 2211 11 15788888888888 8999999999999985 44332 34688899
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHH
Q 009568 168 LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP 247 (532)
Q Consensus 168 lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~ 247 (532)
+|.++++.+|..|+.+++++....|... .++++.+..++ .+.++.++..++++|..++...+.. ......++|
T Consensus 150 ~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~ 222 (618)
T 1w63_A 150 LLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLL-NEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVP 222 (618)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTST-TCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHH
Confidence 9999999999999999999987655432 24667777777 6778999999999999998764221 122345667
Q ss_pred HHHHhhcC---------------CCHHHHHHHHHHHHHhccCCh
Q 009568 248 ALAQLVHS---------------NDEEVLTDACWALSYLSDGTN 276 (532)
Q Consensus 248 ~L~~lL~~---------------~d~~v~~~a~~~L~~l~~~~~ 276 (532)
.++.+|.. .++..+..++.+++.++...+
T Consensus 223 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~ 266 (618)
T 1w63_A 223 QLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD 266 (618)
T ss_dssp HHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH
Confidence 66666542 477888888888888876544
No 49
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.68 E-value=4.5e-15 Score=140.20 Aligned_cols=254 Identities=14% Similarity=0.096 Sum_probs=199.6
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 153 (532)
..++.+++.|.++++.++..|+..|.++.. .+.++.|+.+|.+++ +.++..|+++|+.+..... ..
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~-~~ 88 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKK-CE 88 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTT-TH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccc-cc
Confidence 468999999999999999999999998852 237899999999988 9999999999999875222 11
Q ss_pred HHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568 154 KVVIDHGAVPIFV-KLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (532)
Q Consensus 154 ~~i~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~ 232 (532)
.. +++.|. .++.++++.++..++++|+++....+.... ..++.|+..+ .+.++.++..++++|.++..
T Consensus 89 ~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 89 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred hH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC
Confidence 11 234444 245678999999999999999743332222 2467788888 77889999999999998764
Q ss_pred CCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHH
Q 009568 233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN 312 (532)
Q Consensus 233 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~n 312 (532)
. ..+|.|..++.++++.++..++++|+.+....+ .+++.|+.++.++++.++..|+++|+.
T Consensus 158 ~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 158 K----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred H----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2 478999999999999999999999999853332 456888999999999999999999999
Q ss_pred hhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc-CchhHHHHH
Q 009568 313 IVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN-AEFDIKKEA 391 (532)
Q Consensus 313 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a 391 (532)
+. +...++.|...+.++ + ++..|+++|+.+.. + ..+|.|..++.. .+.++...+
T Consensus 219 ~~-----------~~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~--~---------~~~~~L~~~l~~~~~~~~~~~~ 273 (280)
T 1oyz_A 219 RK-----------DKRVLSVLCDELKKN-T--VYDDIIEAAGELGD--K---------TLLPVLDTMLYKFDDNEIITSA 273 (280)
T ss_dssp TT-----------CGGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC--G---------GGHHHHHHHHTTSSCCHHHHHH
T ss_pred hC-----------CHhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc--h---------hhhHHHHHHHhcCCCcHHHHHH
Confidence 86 225688899999765 3 89999999999853 2 367889998875 467788888
Q ss_pred HHHHH
Q 009568 392 AWAIS 396 (532)
Q Consensus 392 ~~aL~ 396 (532)
..+|.
T Consensus 274 ~~~l~ 278 (280)
T 1oyz_A 274 IDKLK 278 (280)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 77764
No 50
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.64 E-value=1.4e-14 Score=159.21 Aligned_cols=355 Identities=14% Similarity=0.222 Sum_probs=245.8
Q ss_pred cHHHHHhhhcC-------CChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 009568 75 SLPAMVAGVWS-------DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147 (532)
Q Consensus 75 ~l~~lv~~L~s-------~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~ 147 (532)
.+|.++..+.. +++.++..|...|..++..- + ..++ ..++|.+.+.+.+.+ ...+..|+++++.++.
T Consensus 325 il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~--~--~~~~-~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~ 398 (861)
T 2bpt_A 325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNC--G--NHIL-EPVLEFVEQNITADN-WRNREAAVMAFGSIMD 398 (861)
T ss_dssp HHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHH--G--GGGH-HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHc--c--HhHH-HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHc
Confidence 46677777764 23578888889998887632 1 1111 236777778888877 8999999999999998
Q ss_pred CCh-hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh---HHHHHhcCChHHHHHHhhhhhhhHHHHHH
Q 009568 148 GTS-ENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC---RDLVLSQGALIPLLAQLNERAKLSMLRNA 223 (532)
Q Consensus 148 ~~~-~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---~~~~~~~~~l~~L~~ll~~~~~~~~~~~a 223 (532)
+.. +.....+. .+++.|+..+.++++.+|..++|+++.++...... ... -..+++.++..+ .+. +.++..+
T Consensus 399 ~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l-~~~-~~v~~~a 473 (861)
T 2bpt_A 399 GPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGL-QDH-PKVATNC 473 (861)
T ss_dssp SSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHH-TSC-HHHHHHH
T ss_pred CCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHh-ccC-hHHHHHH
Confidence 643 33333332 47889999999999999999999999997532110 001 112466777777 333 7899999
Q ss_pred HHHhhhccCCCC----CCCcccccchHHHHHHhhcCCC--HHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC
Q 009568 224 TWTLSNFCRGKP----QPPFDQVRPALPALAQLVHSND--EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH 297 (532)
Q Consensus 224 ~~~L~~L~~~~~----~~~~~~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 297 (532)
+|++.+++.... ..-......+++.|.+++.+.+ +.++..++.+++.++..........+. .+++.++..+..
T Consensus 474 ~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~ 552 (861)
T 2bpt_A 474 SWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQ 552 (861)
T ss_dssp HHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHH
Confidence 999999987532 1112334667788888887544 789999999999998654433333333 456666666542
Q ss_pred ---------------CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCch-hHHHHHHHHHHHHhcCCH
Q 009568 298 ---------------PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK-SIKKEACWTISNITAGNR 361 (532)
Q Consensus 298 ---------------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl~~~~~ 361 (532)
....++..++.+|++++............ .+++.+..++.+. +. .++..++++++.++....
T Consensus 553 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~ 630 (861)
T 2bpt_A 553 TMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLG 630 (861)
T ss_dssp HTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHG
T ss_pred HHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHh
Confidence 13346778999999998765543222222 5778888888877 66 899999999999986322
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCC--HHHHHHHHHHHH
Q 009568 362 DQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD--PRIVTVCLEGLE 439 (532)
Q Consensus 362 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d--~~v~~~al~~L~ 439 (532)
......+.. ++|.|+..+...++.++..++.++..++.........++ ..+++.+...+.+++ +.++..++.++.
T Consensus 631 ~~~~~~l~~-i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~ 707 (861)
T 2bpt_A 631 KGFEKYLET-FSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFG 707 (861)
T ss_dssp GGGHHHHHH-HHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHH
T ss_pred hhHHHHHHH-HHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHH
Confidence 323333332 788999999878889999999999998875443333332 246777888887654 889999999999
Q ss_pred HHHHhhh
Q 009568 440 NILKVGE 446 (532)
Q Consensus 440 ~l~~~~~ 446 (532)
.++....
T Consensus 708 ~l~~~~~ 714 (861)
T 2bpt_A 708 DIASNIG 714 (861)
T ss_dssp HHHHHHG
T ss_pred HHHHHhh
Confidence 9987643
No 51
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.63 E-value=1.4e-14 Score=159.01 Aligned_cols=396 Identities=12% Similarity=0.146 Sum_probs=264.8
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh-----
Q 009568 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS----- 150 (532)
Q Consensus 76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~----- 150 (532)
++.+.+.+.+.++..+..|+.++..++.+.........+ ..++|.++..+.+++ +.+|..++|+++.++....
T Consensus 371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~ 448 (861)
T 2bpt_A 371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDP 448 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCC
Confidence 344555667888999999999999998642101122222 247899999999887 9999999999999986211
Q ss_pred -hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-----chhHHHHHhcCChHHHHHHhhh-hhhhHHHHHH
Q 009568 151 -ENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-----PRCRDLVLSQGALIPLLAQLNE-RAKLSMLRNA 223 (532)
Q Consensus 151 -~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-----~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~a 223 (532)
.... .+++.|+..+.++ +.++..++++|.+++... ......+ ..+++.|+..+.. +.+..++..+
T Consensus 449 ~~~~~-----~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a 520 (861)
T 2bpt_A 449 QQHLP-----GVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASA 520 (861)
T ss_dssp TTTHH-----HHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHH
T ss_pred HHHHH-----HHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHH
Confidence 1111 3467888888765 899999999999987431 1121221 1246667777742 2347889999
Q ss_pred HHHhhhccCCCCCCCcccccchHHHHHHhhcCC---------------CHHHHHHHHHHHHHhccCChhHHHHHHHhCch
Q 009568 224 TWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN---------------DEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 288 (532)
Q Consensus 224 ~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~---------------d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l 288 (532)
+.++..++...+.........++|.++..+... ...++..++.++..++............ .++
T Consensus 521 ~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~ 599 (861)
T 2bpt_A 521 FSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLM 599 (861)
T ss_dssp HHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHH
T ss_pred HHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHH
Confidence 999999987654332333456667777666521 3457788999999888654432222222 567
Q ss_pred HHHHHhhCCCCc-cchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009568 289 PRLVELLGHPSP-SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAV 367 (532)
Q Consensus 289 ~~L~~lL~~~~~-~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 367 (532)
+.++..+.+.+. .++..++.+++.++..........+. .++|.+...+.+. ++.++..++++++.++....+.+...
T Consensus 600 ~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~ 677 (861)
T 2bpt_A 600 GLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRY 677 (861)
T ss_dssp HHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHH
T ss_pred HHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccch
Confidence 778888877766 89999999999998654433333333 4788999999777 88899999999999986433333333
Q ss_pred HHcCCHHHHHHHHhcCc--hhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCC-----------HHHHHHH
Q 009568 368 IDAGLVGPLVNLLQNAE--FDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD-----------PRIVTVC 434 (532)
Q Consensus 368 ~~~~~i~~L~~ll~~~~--~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d-----------~~v~~~a 434 (532)
+. .+++.++..+.+.+ +++|..++.+++.++.........++- .+++.+...+.... ..++..+
T Consensus 678 ~~-~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~--~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~ 754 (861)
T 2bpt_A 678 SD-AMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTKPENGTLEALDYQIKVLEAV 754 (861)
T ss_dssp HH-HHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Confidence 32 36788888888764 889999999999998754334444432 36777777776431 3577888
Q ss_pred HHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCC----CHHHHHHHHHHHHHhCC
Q 009568 435 LEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHD----NNEIYEKAVKILETYWL 498 (532)
Q Consensus 435 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~----~~~v~~~a~~il~~~~~ 498 (532)
++++..++........ ...+|...+ ++.+.....+. +..++..|..++..+..
T Consensus 755 l~~~~~i~~~l~~~~~------~~~~~~~~i-----~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~ 811 (861)
T 2bpt_A 755 LDAYVGIVAGLHDKPE------ALFPYVGTI-----FQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA 811 (861)
T ss_dssp HHHHHHHHHHTTTCHH------HHGGGHHHH-----HHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHH------HHHHHHHHH-----HHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence 9999888865321000 122233222 34454444442 78999999988887643
No 52
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.60 E-value=6.5e-14 Score=142.22 Aligned_cols=389 Identities=13% Similarity=0.087 Sum_probs=267.0
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHH
Q 009568 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTK 154 (532)
Q Consensus 76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~ 154 (532)
+..++..+.++|..+|..|...|.++... + ..++++.|+.++.+.+ ++.+|..|+..|.++.........
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~--~-------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVE--N-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK 73 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhh--C-------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence 56777788899999999999999886531 0 1236777888887652 489999999999998753311100
Q ss_pred H-----------HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhhhhh--hhHHH
Q 009568 155 V-----------VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERA--KLSML 220 (532)
Q Consensus 155 ~-----------i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~~~--~~~~~ 220 (532)
. -....+-..|+..|.++++.+ ..++.+++.++... +.. .-.+.++.|+..+ .+. ++.++
T Consensus 74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~----~w~~ll~~L~~~l-~~~~~~~~~r 147 (462)
T 1ibr_B 74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN----QWPELIPQLVANV-TNPNSTEHMK 147 (462)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT----CCTTHHHHHHHHH-HCTTCCHHHH
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc----ccHHHHHHHHHHh-ccCCCCHHHH
Confidence 0 001122356777788877778 88999999987432 210 0134677788888 455 78899
Q ss_pred HHHHHHhhhccCCC-CCCCcccccchHHHHHHhhcCC--CHHHHHHHHHHHHHhccCChhHHH-HHHHhCchHHHHHhhC
Q 009568 221 RNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLG 296 (532)
Q Consensus 221 ~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~l~~L~~lL~ 296 (532)
..++.+|..++... +.........+++.+..++.++ ++.++..++++++++.....+... .....-+++.+...+.
T Consensus 148 ~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 227 (462)
T 1ibr_B 148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ 227 (462)
T ss_dssp HHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence 99999999999753 2222233456888888999887 789999999999987643221111 0111124666777778
Q ss_pred CCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH--------------
Q 009568 297 HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD-------------- 362 (532)
Q Consensus 297 ~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-------------- 362 (532)
++++.++..++++|+.++...+......+..++++.++..+.+. ++.++..|++.+..++.....
T Consensus 228 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 306 (462)
T 1ibr_B 228 CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP 306 (462)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence 88899999999999999976553322222226778888888887 899999999999988753110
Q ss_pred -------HHHHHHHcCCHHHHHHHHhc-------CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCH
Q 009568 363 -------QIQAVIDAGLVGPLVNLLQN-------AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDP 428 (532)
Q Consensus 363 -------~~~~l~~~~~i~~L~~ll~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~ 428 (532)
.+...+ ..++|.++..+.. .+..+|..|+.+|..++......... .+++.+...+.++++
T Consensus 307 ~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~-----~~~~~l~~~l~~~~~ 380 (462)
T 1ibr_B 307 PEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDW 380 (462)
T ss_dssp SSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSH
T ss_pred ccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhcCCCh
Confidence 111111 2356777777743 24579999999999988754322222 367788888999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009568 429 RIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLE 499 (532)
Q Consensus 429 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 499 (532)
.++..++.+|..+....... ...++ + ...++.+..+..++++.|+..|.+.+.+|...
T Consensus 381 ~~r~aal~~l~~l~~~~~~~--------~~~~~---l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 381 RYRDAAVMAFGCILEGPEPS--------QLKPL---V--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHHHHHHHHTSSSSCTT--------TTCTT---T--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHH--------HHHHH---H--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999998633211 01111 1 34567788888899999999999999998653
No 53
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.60 E-value=7.5e-14 Score=153.59 Aligned_cols=274 Identities=19% Similarity=0.214 Sum_probs=193.2
Q ss_pred HHHHHhhhcCC--ChHHHHHHHHHHHHHhcCCCCCch-hHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009568 76 LPAMVAGVWSD--DSSLQLEATTQFRKLLSIERSPPI-EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (532)
Q Consensus 76 l~~lv~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~-~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~ 152 (532)
++.+.+.+.++ ++.++..|+.++..++..- .... .......+++.+...+.+++ ++++..++++|..++...+..
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFT-KANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHH
Confidence 45566667766 5789999999999987531 1111 11111236788888887777 899999999999999755554
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh------------------HHHH--HhcCChHHHHHHhh
Q 009568 153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC------------------RDLV--LSQGALIPLLAQLN 212 (532)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~------------------~~~~--~~~~~l~~L~~ll~ 212 (532)
....+...+++.++..+.+.++.++..+++++..++...... .... .-..+++.++..+.
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~ 331 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT 331 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhh
Confidence 444444577888888888888999999999999887431100 0000 00223555666663
Q ss_pred h------hhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh-hHHHHHHHh
Q 009568 213 E------RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN-DKIQAVIEA 285 (532)
Q Consensus 213 ~------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~-~~~~~~~~~ 285 (532)
. +.+..++..+..+|..++...+ ......+++.+...+.++++.++..++++++.++.+.. +.....+ .
T Consensus 332 ~~~~d~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~ 407 (876)
T 1qgr_A 332 KQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-I 407 (876)
T ss_dssp CCCSSCCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-H
T ss_pred cccccccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-H
Confidence 2 2345788888888888876533 13345677888888888999999999999999997754 4333333 3
Q ss_pred CchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchh--HHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568 286 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT--QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (532)
Q Consensus 286 ~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~--~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 358 (532)
.+++.++..+.++++.++..|++++++++...+... ...+ ..+++.++..|.+ ++.++..|+|+|++++.
T Consensus 408 ~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSA--EPRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcC--CHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999997644321 1111 2567788888865 47899999999999985
No 54
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.59 E-value=1.8e-13 Score=150.64 Aligned_cols=405 Identities=14% Similarity=0.166 Sum_probs=259.6
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh---
Q 009568 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN--- 152 (532)
Q Consensus 76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~--- 152 (532)
++.+...+.++++.++..|+.++..++.+......... -..++|.++..+.+++ +.+|..|+|+|++++...+..
T Consensus 368 l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~ 445 (876)
T 1qgr_A 368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAIN 445 (876)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGTSS
T ss_pred HHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCchhccc
Confidence 45556677788999999999999999875310112222 2458999999999888 999999999999999743321
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc---------------hhHHHHHhcCChHHHHHHhhhhh--
Q 009568 153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP---------------RCRDLVLSQGALIPLLAQLNERA-- 215 (532)
Q Consensus 153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~---------------~~~~~~~~~~~l~~L~~ll~~~~-- 215 (532)
...+ ..+++.|+..+.++ +.++..++|+|++++.... .....+ ..+++.|+..+....
T Consensus 446 ~~~l--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~ 520 (876)
T 1qgr_A 446 DVYL--APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGH 520 (876)
T ss_dssp TTTH--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSC
T ss_pred HHHH--HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcc
Confidence 0111 14567788888764 8999999999999974311 011111 124566666663321
Q ss_pred hhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcC-----------CC----HHHHHHHHHHHHHhccCCh-hHH
Q 009568 216 KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS-----------ND----EEVLTDACWALSYLSDGTN-DKI 279 (532)
Q Consensus 216 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~-----------~d----~~v~~~a~~~L~~l~~~~~-~~~ 279 (532)
+..++..+..++..++...+.........+++.++..+.. .| ++++..+++++..++.... ...
T Consensus 521 ~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~ 600 (876)
T 1qgr_A 521 QNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA 600 (876)
T ss_dssp STTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred hhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhh
Confidence 3467778888888888765443334455667776666542 22 4567888999999887654 333
Q ss_pred HHHHHhCchHHHHHhhCCCC--ccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 009568 280 QAVIEAGVCPRLVELLGHPS--PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 357 (532)
Q Consensus 280 ~~~~~~~~l~~L~~lL~~~~--~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 357 (532)
.... ..+++.++.++.+.. +.++..++.+++.++..........+. .+++.+...|.+..++.+|..|+++++.++
T Consensus 601 ~~~~-~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 678 (876)
T 1qgr_A 601 LQIS-DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLC 678 (876)
T ss_dssp HTTH-HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence 3333 357888888887764 468899999999998743322222233 467888888876436789999999999998
Q ss_pred cCCHHHHHHHHHcCCHHHHHHHHhc--CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCC----CH---
Q 009568 358 AGNRDQIQAVIDAGLVGPLVNLLQN--AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP----DP--- 428 (532)
Q Consensus 358 ~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~----d~--- 428 (532)
......+...+. .+++.++..+.+ .+.+++..+++++++++.....+...++ ..+++.+...+... |+
T Consensus 679 ~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~~ 755 (876)
T 1qgr_A 679 RALQSNIIPFCD-EVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL--EVVLNTLQQASQAQVDKSDYDMV 755 (876)
T ss_dssp HHHGGGGHHHHH-HHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHTCCCCTTCHHHH
T ss_pred HHHHHhhhhhHH-HHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHhccCCCCChHHH
Confidence 632223333333 377888888887 3678999999999999763222332222 12566666666543 22
Q ss_pred ----HHHHHHHHHHHHHHHhhhhhhh--ccCCCccchHHHHHHHHhccHHHHHHHhcCC--CHHHHHHHHHHHHHhCC
Q 009568 429 ----RIVTVCLEGLENILKVGEAEKN--MGTATADVNQYAQLVEEAEGLEKIENLQSHD--NNEIYEKAVKILETYWL 498 (532)
Q Consensus 429 ----~v~~~al~~L~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~--~~~v~~~a~~il~~~~~ 498 (532)
.++..++.++..++........ ..+.+ ...+|...+ +..+..+..++ ++.++..|..++..+..
T Consensus 756 ~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~ 827 (876)
T 1qgr_A 756 DYLNELRESCLEAYTGIVQGLKGDQENVHPDVM-LVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDLCT 827 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGG-GSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcccccchHH-HHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 6788888888888775432100 00000 223344333 24455554555 78999988888777543
No 55
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.58 E-value=2.1e-13 Score=155.32 Aligned_cols=405 Identities=13% Similarity=0.134 Sum_probs=271.0
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 154 (532)
.++.+++.+.++|++++..|+..|.+.+... ......-....+++.+++.|.+.+ +.+|..|+.+|+.++...++.
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~-- 82 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY-- 82 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHccc-ccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH--
Confidence 5789999999999999999999999987643 111111122347888999998777 999999999999999754431
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh------HHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhh
Q 009568 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC------RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS 228 (532)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~------~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~ 228 (532)
.+ ..+++.|+..+.++++.+|..++.+|+.++...... .... -..+++.|+..+.++.+..++..++.+|.
T Consensus 83 ~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 83 QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMA 159 (1230)
T ss_dssp HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 11 135688888888888899999999999998433221 1111 12357888888843567889999999999
Q ss_pred hccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCC-CccchhhHH
Q 009568 229 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP-SPSVLIPAL 307 (532)
Q Consensus 229 ~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~al 307 (532)
.++...+..-......+++.+...+.++++.++..++.+++.++...++. ++ ..+++.++..|.+. ++.++..++
T Consensus 160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~ 235 (1230)
T 1u6g_C 160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYI 235 (1230)
T ss_dssp HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHH
Confidence 99864322222244678888888999889999999999999998765432 12 25677788777554 357888899
Q ss_pred HHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc-----
Q 009568 308 RTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN----- 382 (532)
Q Consensus 308 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~----- 382 (532)
.+++.++...+......+ ..+++.++..+.+. ++.+|..++++++.++...+..+...+. .++|.++..+..
T Consensus 236 ~~l~~l~~~~~~~~~~~l-~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~ 312 (1230)
T 1u6g_C 236 QCIAAISRQAGHRIGEYL-EKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYN 312 (1230)
T ss_dssp HHHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC----
T ss_pred HHHHHHHHHhHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCC
Confidence 999999875543221112 36889999999887 8999999999999988743322222221 133444333320
Q ss_pred --------------------------------CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHH
Q 009568 383 --------------------------------AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRI 430 (532)
Q Consensus 383 --------------------------------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v 430 (532)
...++|..|+.++..++.........+ -..+++.+...+.+.++.+
T Consensus 313 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~--~~~l~~~l~~~l~d~~~~V 390 (1230)
T 1u6g_C 313 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF--YKTVSPALISRFKEREENV 390 (1230)
T ss_dssp --------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH--HTTTHHHHHSTTSCSSSHH
T ss_pred CcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHcCCCchHH
Confidence 124579999999999987433212222 2357888999998889999
Q ss_pred HHHHHHHHHHHHHhhhhhhh-ccCC-------CccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009568 431 VTVCLEGLENILKVGEAEKN-MGTA-------TADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 498 (532)
Q Consensus 431 ~~~al~~L~~l~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 498 (532)
+..++.++..++........ .... + ........+ ...++.+.....++++.++..+..++..+..
T Consensus 391 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l--~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~ 463 (1230)
T 1u6g_C 391 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGET-PLTMLQSQV--PNIVKALHKQMKEKSVKTRQCCFNMLTELVN 463 (1230)
T ss_dssp HHHHHHHHHHHHHHHCCC------------CCC-HHHHHHHHT--THHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccccCccccccccc-hHHHHHHHh--hHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 99999999888864321000 0000 0 000001111 2234555666778888888777777766543
No 56
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.56 E-value=1.1e-14 Score=147.93 Aligned_cols=359 Identities=14% Similarity=0.130 Sum_probs=242.6
Q ss_pred HHHHHhhhcCC--ChHHHHHHHHHHHHHhcCCCCCc-----------hhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHH
Q 009568 76 LPAMVAGVWSD--DSSLQLEATTQFRKLLSIERSPP-----------IEEVIQSGVVPRFVEFLMREDYPQLQFEAAWAL 142 (532)
Q Consensus 76 l~~lv~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~-----------~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L 142 (532)
+..++..+.++ ++.+|..|+..|++++... ... +..-....+-..++..|.+++ +.+ ..++.++
T Consensus 37 ~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~-~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~i 113 (462)
T 1ibr_B 37 LVELSRVLANPGNSQVARVAAGLQIKNSLTSK-DPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQCV 113 (462)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhcccc-chHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHHH
Confidence 34555666554 6889999999999998642 100 111112234556777888777 677 8899999
Q ss_pred HHHhcCChhhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhhhhh-hhH
Q 009568 143 TNIASGTSENTKVVIDHGAVPIFVKLLASP--SDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERA-KLS 218 (532)
Q Consensus 143 ~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~~~-~~~ 218 (532)
+.++....... .-.++++.|+..+.++ ++.+++.++.+|+.++.+. +..-.... ..+++.++..+.... +..
T Consensus 114 ~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~ 189 (462)
T 1ibr_B 114 AGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNN 189 (462)
T ss_dssp HHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHH
T ss_pred HHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHH
Confidence 99987321100 0136789999999887 8999999999999998643 21111111 125667777774332 688
Q ss_pred HHHHHHHHhhhccCCCC-C-CCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhC
Q 009568 219 MLRNATWTLSNFCRGKP-Q-PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG 296 (532)
Q Consensus 219 ~~~~a~~~L~~L~~~~~-~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 296 (532)
++..+++++.++..... . ........+++.+...+.+.++.++..+++++..++...+......+..++++.++..+.
T Consensus 190 vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 269 (462)
T 1ibr_B 190 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK 269 (462)
T ss_dssp HHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999998764321 0 011111225677777788889999999999999998655433222222266777777788
Q ss_pred CCCccchhhHHHHHHHhhcCCc---------------------chhHHHhhcCchHHHHHHhcCC------CchhHHHHH
Q 009568 297 HPSPSVLIPALRTVGNIVTGDD---------------------FQTQCIITYGALPYLLGLLTHS------HKKSIKKEA 349 (532)
Q Consensus 297 ~~~~~v~~~al~~L~nl~~~~~---------------------~~~~~~~~~~~l~~L~~lL~~~------~~~~v~~~a 349 (532)
+.++.++..++..++.++.... ...+..+ ..++|.++..+... .+..+|..|
T Consensus 270 ~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a 348 (462)
T 1ibr_B 270 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAA 348 (462)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHH
Confidence 8889999999999999885320 0011011 24567777777432 145799999
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHH
Q 009568 350 CWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429 (532)
Q Consensus 350 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~ 429 (532)
+.+|+.++...++ .++ ..+++.+...+.+.++.+|..|+.+|+.++.+..++.....+ ..+++.++.+|.++++.
T Consensus 349 ~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~ 423 (462)
T 1ibr_B 349 GVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVV 423 (462)
T ss_dssp HHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHH
Confidence 9999999873322 122 236677888888889999999999999999865422111111 35789999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 009568 430 IVTVCLEGLENILKVGEA 447 (532)
Q Consensus 430 v~~~al~~L~~l~~~~~~ 447 (532)
++..++++|.++......
T Consensus 424 Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 424 VRDTAAWTVGRICELLPE 441 (462)
T ss_dssp HHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 999999999999876543
No 57
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.56 E-value=9.8e-13 Score=137.93 Aligned_cols=327 Identities=14% Similarity=0.165 Sum_probs=225.1
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009568 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV 155 (532)
Q Consensus 76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 155 (532)
+..+-+.+++++...+..++..+..+.... .+. ..+.+..++++.+++ ...+..+.-.+..++..+++....
T Consensus 36 ~~~ir~~l~~~~~~~k~~~l~kli~~~~~G-~d~------~~~~~~vik~~~s~~-~~~Krl~Yl~~~~~~~~~~e~~~l 107 (618)
T 1w63_A 36 CAAIRSSFREEDNTYRCRNVAKLLYMHMLG-YPA------HFGQLECLKLIASQK-FTDKRIGYLGAMLLLDERQDVHLL 107 (618)
T ss_dssp HHHHHHHHTTTCTTTHHHHHHHHHHHHHTT-CCC------GGGHHHHHHHHHSSS-HHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHcC-CCC------cchHHHHHHHHcCCc-hHHHHHHHHHHHHHhCCCcHHHHH
Confidence 345555666666666666666555544332 221 225667788888887 899999998999999866654332
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCC
Q 009568 156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP 235 (532)
Q Consensus 156 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~ 235 (532)
+++.|.+-|.++++.++..|+++|+++.. +..- ...++.+..++ .+.++.+++.|+.++..+....|
T Consensus 108 -----~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~~-----~~l~~~l~~~L-~~~~~~VRk~A~~al~~l~~~~p 174 (618)
T 1w63_A 108 -----MTNCIKNDLNHSTQFVQGLALCTLGCMGS--SEMC-----RDLAGEVEKLL-KTSNSYLRKKAALCAVHVIRKVP 174 (618)
T ss_dssp -----HHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHHH-----HHHHHHHHHHH-HSCCHHHHHHHHHHHHHHHHHCG
T ss_pred -----HHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHHH-----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHCh
Confidence 35888889999999999999999999963 2221 23577788888 77899999999999999998643
Q ss_pred CCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC---------------CCc
Q 009568 236 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH---------------PSP 300 (532)
Q Consensus 236 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---------------~~~ 300 (532)
.....+++.+..++.+.|+.|+..|+++|..++...++....+ ..+++.++.+|.+ .++
T Consensus 175 ----~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~ 248 (618)
T 1w63_A 175 ----ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDP 248 (618)
T ss_dssp ----GGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCH
T ss_pred ----HHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCC
Confidence 2334778888899999999999999999999987655422222 1566666665532 345
Q ss_pred cchhhHHHHHHHhhcCCcchhHH-------H----------------------h--------hcCchHHHHHHhcCCCch
Q 009568 301 SVLIPALRTVGNIVTGDDFQTQC-------I----------------------I--------TYGALPYLLGLLTHSHKK 343 (532)
Q Consensus 301 ~v~~~al~~L~nl~~~~~~~~~~-------~----------------------~--------~~~~l~~L~~lL~~~~~~ 343 (532)
-.+..++++|+.++..++..... + + ...+++.|..++.++ ++
T Consensus 249 ~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~-d~ 327 (618)
T 1w63_A 249 FLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNN-DK 327 (618)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCS-ST
T ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCC-CC
Confidence 56666777777776654321110 0 0 002455667777777 78
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhc
Q 009568 344 SIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLF 423 (532)
Q Consensus 344 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL 423 (532)
.+|..|+.+|+.++...+..+ . ...+.++.++.+++..+|..|+.+|..++...+.+ . +++.|...+
T Consensus 328 ~vr~~aL~~L~~i~~~~p~~~----~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~---~-----iv~eL~~~l 394 (618)
T 1w63_A 328 NIRYVALTSLLKTVQTDHNAV----Q-RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIR---G-----MMKELLYFL 394 (618)
T ss_dssp TTHHHHHHHHHHHHHHHHHHH----G-GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTH---H-----HHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhCHHHH----H-HHHHHHHHHccCCChhHHHHHHHHHHHHcccccHH---H-----HHHHHHHHH
Confidence 888888888888876444322 1 24567788888888889999999998888754421 1 345566666
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 009568 424 VCPDPRIVTVCLEGLENILK 443 (532)
Q Consensus 424 ~~~d~~v~~~al~~L~~l~~ 443 (532)
.+.|.+++..++.+|..+..
T Consensus 395 ~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 395 DSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp HHCCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHH
Confidence 66777777777777776655
No 58
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.50 E-value=4e-13 Score=153.01 Aligned_cols=398 Identities=12% Similarity=0.110 Sum_probs=260.4
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCc----hhHhhhCCcHHHHHHhhcC-CCCHHHHHHHHHHHHHHhcCC
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPP----IEEVIQSGVVPRFVEFLMR-EDYPQLQFEAAWALTNIASGT 149 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~----~~~~i~~g~i~~Lv~lL~~-~~~~~~~~~a~~~L~~l~~~~ 149 (532)
.++.++..+.++++.+|..|+.++..++..-.... ...-....++|.|+..+.+ ++ +.++..|+.+|..++...
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~ 165 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQ 165 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHh
Confidence 46777888888888889889999988876431110 1111234589999999984 65 899999999999998521
Q ss_pred hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhh
Q 009568 150 SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN 229 (532)
Q Consensus 150 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~ 229 (532)
........ ..+++.|+..|.+++..+|..|+.+|+.++...+. .+ -...++.++..+....+..++..++.++..
T Consensus 166 ~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~ 240 (1230)
T 1u6g_C 166 GGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAA 240 (1230)
T ss_dssp CSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred HhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 11100000 23467788888888899999999999999865432 11 223577788877544344667778888888
Q ss_pred ccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC------------
Q 009568 230 FCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH------------ 297 (532)
Q Consensus 230 L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~------------ 297 (532)
++...+..-......++|.+...+.+++++++..+++++..++..........+ ..+++.++..+..
T Consensus 241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~ 319 (1230)
T 1u6g_C 241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDED 319 (1230)
T ss_dssp HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-----------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccc
Confidence 876543222234578999999999988999999999999988865443222222 1345555544421
Q ss_pred -------------------------CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHH
Q 009568 298 -------------------------PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWT 352 (532)
Q Consensus 298 -------------------------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 352 (532)
..+.++..|+.+++.++...+.....++ ..+++.+...+.+. ++.+|..++.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~ 397 (1230)
T 1u6g_C 320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHA 397 (1230)
T ss_dssp -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHH
T ss_pred cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHH
Confidence 1245688899999999875543333333 36788888888777 88999999998
Q ss_pred HHHHhc--CC-----------------HHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 009568 353 ISNITA--GN-----------------RDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE 413 (532)
Q Consensus 353 L~nl~~--~~-----------------~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 413 (532)
+..++. +. ......++ ..+++.+...+.+.++.+|..++.+|+.++.........++ .
T Consensus 398 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l--~ 474 (1230)
T 1u6g_C 398 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--P 474 (1230)
T ss_dssp HHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--H
T ss_pred HHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH--H
Confidence 887764 11 11222222 23567777778888999999999999988765321111111 2
Q ss_pred CChHHHHhhcCCCCH--HHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHH
Q 009568 414 GCIKPLCDLFVCPDP--RIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVK 491 (532)
Q Consensus 414 ~~l~~L~~lL~~~d~--~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~ 491 (532)
.+++.+...|.++.+ .++..++..+..++...... ...+|.. ..++.+.....+++..|...|..
T Consensus 475 ~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~--------~~~~~l~-----~llp~L~~~l~d~~~~v~~~al~ 541 (1230)
T 1u6g_C 475 VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQ--------VFHPHVQ-----ALVPPVVACVGDPFYKITSEALL 541 (1230)
T ss_dssp HHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGG--------GGHHHHT-----TTHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHH--------HHHhHHH-----HHHHHHHHHHcccchHHHHHHHH
Confidence 367888888887654 88888888888887532111 1112222 33555656666777777666655
Q ss_pred HHHHhC
Q 009568 492 ILETYW 497 (532)
Q Consensus 492 il~~~~ 497 (532)
.+..+.
T Consensus 542 ~l~~l~ 547 (1230)
T 1u6g_C 542 VTQQLV 547 (1230)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 59
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.46 E-value=5.6e-12 Score=112.47 Aligned_cols=184 Identities=22% Similarity=0.227 Sum_probs=157.6
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCc
Q 009568 160 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 239 (532)
Q Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 239 (532)
+..+.++++|.++++.++..|+++|+.+.. ...++.|+..+ .+.++.++..++++|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence 456889999999999999999999998842 13578899999 67889999999999998853
Q ss_pred ccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcc
Q 009568 240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF 319 (532)
Q Consensus 240 ~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~ 319 (532)
...++.|..++.++++.++..++++|+.+.. ...++.|+.++.++++.++..|+++|+.+..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 2678999999999999999999999998753 2467889999999999999999999999853
Q ss_pred hhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009568 320 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT 399 (532)
Q Consensus 320 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 399 (532)
...++.|..++.++ ++.+|..|+++|+.+. .+. .++.|..++.++++.+|..|..+|.++-
T Consensus 137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GER---------VRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SHH---------HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--chh---------HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 25678899999988 9999999999999993 333 4677888889999999999999999874
No 60
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.45 E-value=2.2e-12 Score=116.04 Aligned_cols=187 Identities=21% Similarity=0.189 Sum_probs=158.5
Q ss_pred CCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 009568 116 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195 (532)
Q Consensus 116 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 195 (532)
.+.++.|+++|.+++ +.++..|+++|+.+.. ..+++.|+.+|.++++.++..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 457999999999888 9999999999998764 2568999999999999999999999999842
Q ss_pred HHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 009568 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT 275 (532)
Q Consensus 196 ~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~ 275 (532)
.+.++.|+..+ .+.++.++..++++|..+.. ...++.|..++.++++.++..++++|+.+..
T Consensus 80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 23578888888 77889999999999999864 3578999999999999999999999999853
Q ss_pred hhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 009568 276 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN 355 (532)
Q Consensus 276 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 355 (532)
...++.|..++.++++.++..|+.+|+.+.. ..+++.|..++.++ ++.||..|..+|.+
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET 200 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 2468889999999999999999999999853 24567888999888 99999999999999
Q ss_pred HhcC
Q 009568 356 ITAG 359 (532)
Q Consensus 356 l~~~ 359 (532)
+...
T Consensus 201 ~~~~ 204 (211)
T 3ltm_A 201 HKSF 204 (211)
T ss_dssp ----
T ss_pred cCCC
Confidence 9764
No 61
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.45 E-value=2.5e-12 Score=115.70 Aligned_cols=188 Identities=22% Similarity=0.216 Sum_probs=157.8
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCC
Q 009568 159 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 238 (532)
Q Consensus 159 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~ 238 (532)
.+.++.|+..|.++++.++..++++|+.+.. ...++.|+.++ .+.++.++..++++|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC------
Confidence 3568999999999999999999999998843 23578899998 67789999999999999863
Q ss_pred cccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCc
Q 009568 239 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 318 (532)
Q Consensus 239 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~ 318 (532)
...++.|..++.++++.++..++++|+.+.. .+.++.|+.++.++++.++..|+.+|+.+..
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence 3678999999999999999999999998853 2568899999999999999999999999853
Q ss_pred chhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009568 319 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA 398 (532)
Q Consensus 319 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 398 (532)
...++.|..++.++ ++.+|..|+++|+.+.. +. .++.|..++.++++.||..|..+|.++
T Consensus 142 --------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~--~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 142 --------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG--ER---------VRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp --------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS--HH---------HHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred --------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--hh---------HHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 24678899999888 99999999999999943 22 467788889999999999999999998
Q ss_pred hcCC
Q 009568 399 TSGG 402 (532)
Q Consensus 399 ~~~~ 402 (532)
....
T Consensus 202 ~~~~ 205 (211)
T 3ltm_A 202 KSFN 205 (211)
T ss_dssp ----
T ss_pred CCCC
Confidence 7653
No 62
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.42 E-value=3.8e-12 Score=113.58 Aligned_cols=186 Identities=22% Similarity=0.204 Sum_probs=159.2
Q ss_pred hCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 009568 115 QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194 (532)
Q Consensus 115 ~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 194 (532)
..+..+.++++|.+++ +.++..|+++|+.+.. .+.++.|+.+|.++++.++..++++|+.+.. +
T Consensus 12 ~~~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~-- 75 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E-- 75 (201)
T ss_dssp CHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G--
T ss_pred CCcchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H--
Confidence 3457899999999998 9999999999998764 2468999999999999999999999999842 1
Q ss_pred HHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 009568 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG 274 (532)
Q Consensus 195 ~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~ 274 (532)
..++.|+..+ .+.++.++..++++|..+.. ...++.|..++.++++.++..++++|+.+..
T Consensus 76 -------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~- 136 (201)
T 3ltj_A 76 -------RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD- 136 (201)
T ss_dssp -------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-
T ss_pred -------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-
Confidence 3578888888 67889999999999999764 3578999999999999999999999998853
Q ss_pred ChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHH
Q 009568 275 TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS 354 (532)
Q Consensus 275 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 354 (532)
...++.|..++.++++.++..|+.+|+.+.. + ..++.|..++.++ ++.+|..|.++|+
T Consensus 137 ----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 137 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVAVNYLE 194 (201)
T ss_dssp ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 2578889999999999999999999999842 1 3577888899888 9999999999999
Q ss_pred HHh
Q 009568 355 NIT 357 (532)
Q Consensus 355 nl~ 357 (532)
++.
T Consensus 195 ~l~ 197 (201)
T 3ltj_A 195 THK 197 (201)
T ss_dssp HCC
T ss_pred HHH
Confidence 874
No 63
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.39 E-value=8.3e-11 Score=122.87 Aligned_cols=328 Identities=13% Similarity=0.107 Sum_probs=230.6
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 153 (532)
.....+++.+.+++...+..+.-.+..++.. ++. .++- +++.+.+=|++++ +.++..|+.+|+++.. ++..
T Consensus 74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~--~~e--~~~L--~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~ 144 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNS--NSE--LIRL--INNAIKNDLASRN-PTFMGLALHCIANVGS--REMA 144 (621)
T ss_dssp SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCC--CHH--HHHH--HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHccC--CcH--HHHH--HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHH
Confidence 3578899999999999999888888888754 222 1111 4677888888888 9999999999999975 5544
Q ss_pred HHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhcc
Q 009568 154 KVVIDHGAVPIFVKLL--ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC 231 (532)
Q Consensus 154 ~~i~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~ 231 (532)
.. +++.+.++| .+.++.+|..|+.++.++....|.. +...+.++.+..+| .+.++.++..++.++..++
T Consensus 145 ~~-----l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~ 215 (621)
T 2vgl_A 145 EA-----FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLA 215 (621)
T ss_dssp HH-----HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHH
Confidence 43 458889999 8899999999999999998755542 22247888999998 7788999999999999998
Q ss_pred CCCCCCCcccccchHHHHHH----hhcCC-------------CHHHHHHHHHHHHHhccCC-hhHHHHHHHhCchHHHHH
Q 009568 232 RGKPQPPFDQVRPALPALAQ----LVHSN-------------DEEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVE 293 (532)
Q Consensus 232 ~~~~~~~~~~~~~~l~~L~~----lL~~~-------------d~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ 293 (532)
...+. .....+|.+++ ++... ++..+...+..+..++... ++....+.+ ++..++.
T Consensus 216 ~~~~~----~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~ 289 (621)
T 2vgl_A 216 QKNPE----EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILN 289 (621)
T ss_dssp HHCHH----HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHH
T ss_pred HhChH----HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHH
Confidence 76432 22344554444 43221 6889999999999888643 333332322 3444443
Q ss_pred hhC---------CCCc--cchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH
Q 009568 294 LLG---------HPSP--SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD 362 (532)
Q Consensus 294 lL~---------~~~~--~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 362 (532)
.+. +.+. .+...|++++..+.. .+.. +. .++..|..+|.++ ++.+|..|+.+|..++...+.
T Consensus 290 ~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~----~~-~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~ 362 (621)
T 2vgl_A 290 KAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNL----LV-RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS 362 (621)
T ss_dssp HHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHH----HH-HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT
T ss_pred hhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHH----HH-HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc
Confidence 321 1122 677888888888752 2211 11 4567788888877 899999999999999875432
Q ss_pred HHHHHHHcCCHHHHHHHHh-cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 009568 363 QIQAVIDAGLVGPLVNLLQ-NAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENI 441 (532)
Q Consensus 363 ~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l 441 (532)
. ..+ ....+.++..+. ++|..+|..++..|..++.. ..... ++..|...+...|.+++..++.++..+
T Consensus 363 -~-~~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~---~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~l 431 (621)
T 2vgl_A 363 -H-EAV-KTHIETVINALKTERDVSVRQRAVDLLYAMCDR---SNAQQ-----IVAEMLSYLETADYSIREEIVLKVAIL 431 (621)
T ss_dssp -H-HHH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH---HHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred -H-HHH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh---hhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 1 122 235677888888 88999999999999999753 33333 455666666667777776666666555
Q ss_pred HH
Q 009568 442 LK 443 (532)
Q Consensus 442 ~~ 443 (532)
..
T Consensus 432 a~ 433 (621)
T 2vgl_A 432 AE 433 (621)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.29 E-value=4.4e-09 Score=109.88 Aligned_cols=320 Identities=15% Similarity=0.114 Sum_probs=219.6
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 009568 87 DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 166 (532)
Q Consensus 87 ~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~ 166 (532)
+...+..++..+.-+.... .+. ..+.+..++++.+++ ...+..+.-.+..++..+++....+ ++.+.
T Consensus 51 ~~~~k~~~l~Kli~l~~~G-~d~------s~~~~~vvkl~~s~~-~~~Krl~YL~l~~~~~~~~e~~~L~-----iN~l~ 117 (621)
T 2vgl_A 51 DGYSKKKYVCKLLFIFLLG-HDI------DFGHMEAVNLLSSNR-YTEKQIGYLFISVLVNSNSELIRLI-----NNAIK 117 (621)
T ss_dssp CHHHHHHHHHHHHHHHHHS-CCC------CSCHHHHHHGGGCSC-HHHHHHHHHHHHHSCCCCHHHHHHH-----HHHHH
T ss_pred CHHHHHHHHHHHHHHHHcC-CCC------chhHHHHHHHhcCCC-HHHHHHHHHHHHHHccCCcHHHHHH-----HHHHH
Confidence 5556666665555444322 111 236778888999988 8999999999999998777654332 57788
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhh-hhhhhHHHHHHHHHhhhccCCCCCCCcccccch
Q 009568 167 KLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPA 245 (532)
Q Consensus 167 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~ 245 (532)
+-|.++++.++..|+.+|+++.. +..-+ ..++.+.+++. .+.++.+++.|+.++..+.+..|. .....+.
T Consensus 118 kDl~~~n~~ir~lALr~L~~i~~--~e~~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~--~~~~~~~ 188 (621)
T 2vgl_A 118 NDLASRNPTFMGLALHCIANVGS--REMAE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD--LVPMGDW 188 (621)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHCC--HHHHH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG--GCCCCSC
T ss_pred HhcCCCCHHHHHHHHHHhhccCC--HHHHH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh--hcCchhH
Confidence 88889999999999999999943 33222 24677777773 466899999999999999986432 1112478
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCC-------------CccchhhHHHHHHH
Q 009568 246 LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP-------------SPSVLIPALRTVGN 312 (532)
Q Consensus 246 l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-------------~~~v~~~al~~L~n 312 (532)
++.+..+|.+.|+.|+..++.++..++...+......+. .++..|..++..+ ++-.+...+++++.
T Consensus 189 ~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~-~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~ 267 (621)
T 2vgl_A 189 TSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVS-LAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQC 267 (621)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHH-HHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHH
Confidence 899999999999999999999999998665542221111 2333343444221 45577778888888
Q ss_pred hhcCCc-chhHHHhhcCchHHHHHHhc---------CCCch--hHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH
Q 009568 313 IVTGDD-FQTQCIITYGALPYLLGLLT---------HSHKK--SIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLL 380 (532)
Q Consensus 313 l~~~~~-~~~~~~~~~~~l~~L~~lL~---------~~~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 380 (532)
++...+ .....+.+ +++.++..+. +. +. .|..+|+.++..+. ..++.... ++..|..++
T Consensus 268 ~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~-n~~~aVl~ea~~~i~~l~-~~~~~~~~-----~~~~L~~~L 338 (621)
T 2vgl_A 268 YPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHS-NAKNAVLFEAISLIIHHD-SEPNLLVR-----ACNQLGQFL 338 (621)
T ss_dssp SSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHH-HHHHHHHHHHHHHHHHHC-CCHHHHHH-----HHHHHHHHS
T ss_pred hCCCCCHHHHHHHHH--HHHHHHHhhccCccccccccc-chHHHHHHHHHHHHHhcC-CcHHHHHH-----HHHHHHHHh
Confidence 775432 23322222 3333333221 22 22 78888999998886 33443332 456788888
Q ss_pred hcCchhHHHHHHHHHHHhhcCCC-HHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHH
Q 009568 381 QNAEFDIKKEAAWAISNATSGGT-HEQIKYLVREGCIKPLCDLFV-CPDPRIVTVCLEGLENILK 443 (532)
Q Consensus 381 ~~~~~~v~~~a~~aL~nl~~~~~-~~~~~~l~~~~~l~~L~~lL~-~~d~~v~~~al~~L~~l~~ 443 (532)
.+.++.+|..|+.+|..++.... ... + ......++.+|+ ++|..++..+++.|..+..
T Consensus 339 ~~~~~niry~aL~~l~~l~~~~~~~~~----~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~ 398 (621)
T 2vgl_A 339 QHRETNLRYLALESMCTLASSEFSHEA----V-KTHIETVINALKTERDVSVRQRAVDLLYAMCD 398 (621)
T ss_dssp SCSCHHHHHHHHHHHHHHTTCTTTHHH----H-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred cCCCcchHHHHHHHHHHHHhccCcHHH----H-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC
Confidence 88899999999999999987642 121 2 246778888888 9999999999999888864
No 65
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.15 E-value=2.1e-09 Score=113.62 Aligned_cols=273 Identities=14% Similarity=0.145 Sum_probs=193.0
Q ss_pred cHHHHHhhhc---CCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCC-------CHHHHHHHHHHHHH
Q 009568 75 SLPAMVAGVW---SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-------YPQLQFEAAWALTN 144 (532)
Q Consensus 75 ~l~~lv~~L~---s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-------~~~~~~~a~~~L~~ 144 (532)
.+..+-..|. ++++.++.-|+..|.-+-.+.. . .++..|...|.+++ .+.++..|+..|+-
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~----~-----~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG----R-----DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT----H-----HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc----H-----HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4555555665 5677788888888888876531 1 14667777776543 36789999999999
Q ss_pred HhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHH
Q 009568 145 IASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNAT 224 (532)
Q Consensus 145 l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~ 224 (532)
+..|+... .+++.|...|.+.+..+++.|+.+|+.+-.++.. .+ ++..|+..+..+.+..+++.++
T Consensus 464 a~~GS~~e-------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-~~------ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 464 AAMGSANI-------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-PE------AIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp HSTTCCCH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-HH------HHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhcCCCCH-------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-HH------HHHHHHHHHhccCcHHHHHHHH
Confidence 87654321 2357778888777777888999999987433221 11 3566777665566778999999
Q ss_pred HHhhhccCCCCCCCcccccchHHHHHHhhc-CCCHHHHHHHHHHHHHhc--cCChhHHHHHHHhCchHHHHHhh-CCCCc
Q 009568 225 WTLSNFCRGKPQPPFDQVRPALPALAQLVH-SNDEEVLTDACWALSYLS--DGTNDKIQAVIEAGVCPRLVELL-GHPSP 300 (532)
Q Consensus 225 ~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~--~~~~~~~~~~~~~~~l~~L~~lL-~~~~~ 300 (532)
.+|..+..+. ...++.++..|. +.++-++..++.+++.-. .++.. .++.|++.+ .+.+.
T Consensus 530 lgLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~---------aIq~LL~~~~~d~~d 592 (963)
T 4ady_A 530 VGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS---------AVKRLLHVAVSDSND 592 (963)
T ss_dssp HHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH---------HHHHHHHHHHHCSCH
T ss_pred HHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHhccCCcH
Confidence 9999887654 245566776665 568888888888776443 33333 344444443 45677
Q ss_pred cchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH
Q 009568 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLL 380 (532)
Q Consensus 301 ~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 380 (532)
.++..|+.+||.+..+.++ .++.++.+|.+..++.+|..|+++|+.++.+++.. .++..|..++
T Consensus 593 ~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~ 656 (963)
T 4ady_A 593 DVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHc
Confidence 8999999999999887652 34556665544449999999999999999876531 1456777888
Q ss_pred hcCchhHHHHHHHHHHHhhcCCC
Q 009568 381 QNAEFDIKKEAAWAISNATSGGT 403 (532)
Q Consensus 381 ~~~~~~v~~~a~~aL~nl~~~~~ 403 (532)
.+.+..||..|+.+|+.+..+.+
T Consensus 657 ~D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 657 KDPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp TCSSHHHHHHHHHHHHHHSTTCC
T ss_pred cCCCHHHHHHHHHHHHHHhcCCc
Confidence 88899999999999999987654
No 66
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.13 E-value=7.8e-10 Score=117.08 Aligned_cols=214 Identities=16% Similarity=0.106 Sum_probs=156.7
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCC-CchhH
Q 009568 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV-KLLASPSDDVREQAVWALGNVAGD-SPRCR 195 (532)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~ 195 (532)
++| +++.|++++ +..|..|+++|++|+. ++..+..+...|++..++ .+|.+++.+++..|+++|.||+.+ ++..+
T Consensus 36 i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 36 ILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp THH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 455 556789988 8999999999999997 788888999999887765 578889999999999999999954 56788
Q ss_pred HHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 009568 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT 275 (532)
Q Consensus 196 ~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~ 275 (532)
..+...|++++|..++.+ .. ..+..+........ ......+ ..+...++.+|.+++..+
T Consensus 113 ~~l~~~~il~~L~~~l~~-~~--------~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~l~lL~~L~e~s 171 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKA-VL--------ETLTTSEPPFSKLL-KAQQRLV-----------WDITGSLLVLIGLLALAR 171 (684)
T ss_dssp HHHHHTTHHHHHHHHHHH-HH--------HHHHCBTTBGGGSC-HHHHHHH-----------HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcChHHHHHHHHHh-hH--------HHHhhhcccccccc-HHHHHHH-----------HHHHHHHHHHHHHHHhCC
Confidence 889999999999999832 21 12222221110000 0001111 124456777888888888
Q ss_pred hhHHHHHHHhCchHHHHHhhCCC---CccchhhHHHHHHHhhcCCcchhHHHhhcCchHH---HHHHhcCCCchhHHHHH
Q 009568 276 NDKIQAVIEAGVCPRLVELLGHP---SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPY---LLGLLTHSHKKSIKKEA 349 (532)
Q Consensus 276 ~~~~~~~~~~~~l~~L~~lL~~~---~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~---L~~lL~~~~~~~v~~~a 349 (532)
++....+...+.++.|+.+|.+. ...++..|+.+|.+++..++...+.+.+.+.... +..+.++ +...+..+
T Consensus 172 ~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~--~~~~~~la 249 (684)
T 4gmo_A 172 DEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG--TDPRAVMA 249 (684)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS--SCTTHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC--CcHHHHHH
Confidence 88778888889999999988442 3568999999999999999888888877765433 3333333 44568889
Q ss_pred HHHHHHHh
Q 009568 350 CWTISNIT 357 (532)
Q Consensus 350 ~~~L~nl~ 357 (532)
|++|.|+.
T Consensus 250 ~giL~Ni~ 257 (684)
T 4gmo_A 250 CGVLHNVF 257 (684)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhHh
Confidence 99999975
No 67
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.07 E-value=1e-08 Score=84.67 Aligned_cols=218 Identities=15% Similarity=0.192 Sum_probs=174.6
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCC
Q 009568 158 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP 237 (532)
Q Consensus 158 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~ 237 (532)
+..++..++.+|.+.-+.++.+|+..+.+++..-+...+.+ +..|+.++.++....+......+++.++...|
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-- 102 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-- 102 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence 44567889999998889999999999999998877755443 56777788778888888888889999887643
Q ss_pred CcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCC
Q 009568 238 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD 317 (532)
Q Consensus 238 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~ 317 (532)
..+.+.+|.+..-..-.|+.++....++|..++..++.... +++..+..++.+++..-+..|+..++.+....
T Consensus 103 --e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~ 175 (253)
T 2db0_A 103 --ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS 175 (253)
T ss_dssp --HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred --HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence 45678888888888888999999999999999987776544 66778999999988777888888888777644
Q ss_pred cchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHH
Q 009568 318 DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 397 (532)
Q Consensus 318 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~n 397 (532)
. +++ .-.+|.|..+|.+. +.-||..|..+|.+++..++... .++ ..-+.-+.+.+..+++....+|+.
T Consensus 176 ~---~yv--~PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklR-kii-----~~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 176 F---KYV--NPFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLR-KVV-----IKRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp H---HHH--GGGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHH-HHH-----HHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred c---ccc--CcchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHH-HHH-----HHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3 222 25789999999998 99999999999999999888743 332 234555777788899999999988
Q ss_pred hhcC
Q 009568 398 ATSG 401 (532)
Q Consensus 398 l~~~ 401 (532)
++.-
T Consensus 244 l~l~ 247 (253)
T 2db0_A 244 LLLL 247 (253)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8653
No 68
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=99.04 E-value=5.8e-09 Score=90.13 Aligned_cols=226 Identities=17% Similarity=0.159 Sum_probs=174.3
Q ss_pred cchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhH
Q 009568 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ 322 (532)
Q Consensus 243 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~ 322 (532)
...+..|..++...|+.++..++.+|..+....++......-..+++.++.++.+.+..+...|++||+.+..+.+-.-.
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 45678899999999999999999999999877555555555558999999999999999999999999999998774333
Q ss_pred HHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009568 323 CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG 402 (532)
Q Consensus 323 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 402 (532)
.+. .+...+..+++++ ++-++.+|+-.++-+--.++. ..++..+..++.+.+++++..+..++.+++...
T Consensus 112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 222 3567888888877 999999999999998432211 125567888888899999999999999998753
Q ss_pred -CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHh-cC
Q 009568 403 -THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ-SH 480 (532)
Q Consensus 403 -~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~-~~ 480 (532)
+++.. .+++.-+-++|+++|+.++..++.++..++...-... ....+ .+....+..|. -.
T Consensus 182 ~D~~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~-------~~~~~------~~~~~~v~~l~~~~ 243 (265)
T 3b2a_A 182 ADSGHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLEN-------VKIEL------LKISRIVDGLVYRE 243 (265)
T ss_dssp SSCCCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSC-------CHHHH------HHHHHHHHHGGGCS
T ss_pred CCHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHh-------HHHHH------HHHHHHHHHHHHhc
Confidence 22221 2478888899999999999999999999987632211 11112 23456777887 67
Q ss_pred CCHHHHHHHHHHHHHh
Q 009568 481 DNNEIYEKAVKILETY 496 (532)
Q Consensus 481 ~~~~v~~~a~~il~~~ 496 (532)
..|.+..+|..+-+.+
T Consensus 244 ~~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 244 GAPIIRLKAKKVSDLI 259 (265)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHH
Confidence 8899999998877654
No 69
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.02 E-value=1.7e-08 Score=96.09 Aligned_cols=277 Identities=14% Similarity=0.063 Sum_probs=167.6
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 154 (532)
.+..+++.+.++|...+....-.+..+.... .. ++ =+++.|.+=+++++ +-++-.|+++|++|.. ++..+
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e----~i--Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~~ 138 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-ED----VI--IVTSSLTKDMTGKE-DSYRGPAVRALCQITD--STMLQ 138 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SC----GG--GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HH----HH--HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHHH
Confidence 5678899999999999998888888776531 11 22 16788899999988 9999999999999987 44444
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (532)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~ 234 (532)
.+ .+.+.+.|.+.++-||..|+.+..++....|+.. .+++..+-.++ .+.++.++.+++.+|..++..+
T Consensus 139 ~l-----~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 139 AI-----ERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp HH-----HHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred HH-----HHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc
Confidence 33 4778889999999999999999999988777632 25788888888 7778889999999999998753
Q ss_pred CCCCcccccchHHHHHHhhcCC---CHHHHHHHHHHHHHhccCC-hhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHH
Q 009568 235 PQPPFDQVRPALPALAQLVHSN---DEEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310 (532)
Q Consensus 235 ~~~~~~~~~~~l~~L~~lL~~~---d~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L 310 (532)
...+..++..+... ++..+...+..+..++..+ +. ....+++.+..+|++.++.|...|++++
T Consensus 208 --------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I 274 (355)
T 3tjz_B 208 --------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAI 274 (355)
T ss_dssp --------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 22444555544432 5666666666665655443 21 2236788888999999999999999999
Q ss_pred HHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHH
Q 009568 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKE 390 (532)
Q Consensus 311 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 390 (532)
..+...+.. .+ ..++..|..++.++ ++.+|..|+..|..+....|..++. .-..+..++.+++..+...
T Consensus 275 ~~l~~~~~~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~ 343 (355)
T 3tjz_B 275 VNLPGCSAK----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATL 343 (355)
T ss_dssp TC----------------CCCTHHHHHHSS-SSSSHHHHHHCC-------------------------------------
T ss_pred HhccCCCHH----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHH
Confidence 887652221 11 24567788888888 9999999999999999877765433 2345667788888777766
Q ss_pred HHHHHH
Q 009568 391 AAWAIS 396 (532)
Q Consensus 391 a~~aL~ 396 (532)
|..+|.
T Consensus 344 Aittll 349 (355)
T 3tjz_B 344 AITTLL 349 (355)
T ss_dssp ------
T ss_pred HHHHhh
Confidence 665553
No 70
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.89 E-value=4.8e-08 Score=93.04 Aligned_cols=275 Identities=13% Similarity=0.115 Sum_probs=161.2
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009568 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 197 (532)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 197 (532)
+.+..++++.+++ ..++....-.+.+++...++. + =++..|.+=+.++++-+|-.|+++|++|.... .-+.
T Consensus 69 lf~~v~kl~~s~d-~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m~~~ 139 (355)
T 3tjz_B 69 AFFAMTKLFQSND-PTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDST--MLQA 139 (355)
T ss_dssp HHHHHHGGGGCCC-HHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT--THHH
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH--HHHH
Confidence 5677889999998 899999998998888853332 1 24688888899999999999999999996433 1111
Q ss_pred HHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChh
Q 009568 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND 277 (532)
Q Consensus 198 ~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~ 277 (532)
+.+.+.+.+ .+.++.+++.|+.+...|....| ....+.++.+..++.+.++.++.+|+.++..+...+..
T Consensus 140 -----l~~~lk~~L-~d~~pyVRk~A~l~~~kL~~~~p----e~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~ 209 (355)
T 3tjz_B 140 -----IERYMKQAI-VDKVPSVSSSALVSSLHLLKCSF----DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL 209 (355)
T ss_dssp -----HHHHHHHHH-TCSSHHHHHHHHHHHHHHTTTCH----HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH
T ss_pred -----HHHHHHHHc-CCCCHHHHHHHHHHHHHHhccCH----HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH
Confidence 345556666 78899999999999999987643 23467888999999999999999999999998865432
Q ss_pred HHHHHHHhCchHHHHHhhCCC---CccchhhHHHHHHHhhcCC-cchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHH
Q 009568 278 KIQAVIEAGVCPRLVELLGHP---SPSVLIPALRTVGNIVTGD-DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI 353 (532)
Q Consensus 278 ~~~~~~~~~~l~~L~~lL~~~---~~~v~~~al~~L~nl~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 353 (532)
.+..++..+... ++-.+...+++++.++..+ +. ....+++.+..+|++. ++.|..+|++++
T Consensus 210 ---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~-~~aVvyEa~k~I 274 (355)
T 3tjz_B 210 ---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNK-HEMVVYEAASAI 274 (355)
T ss_dssp ---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCS-SHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCC-ChHHHHHHHHHH
Confidence 233344444332 2333344455555555443 21 2235677888889988 999999999999
Q ss_pred HHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHH
Q 009568 354 SNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 433 (532)
Q Consensus 354 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~ 433 (532)
..+...... +. ..++..|..++.++++.+|-.|+..|..++.. .|.... .+-.-+..+++++|..+...
T Consensus 275 ~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~-~P~~v~-----~~n~~ie~li~d~n~sI~t~ 343 (355)
T 3tjz_B 275 VNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMK-HPSAVT-----ACNLDLENLVTDANRSIATL 343 (355)
T ss_dssp TC----------------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------------------
T ss_pred HhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-CcHHHH-----HHHHHHHHHccCCcHhHHHH
Confidence 998652222 12 22456777788889999999999999888775 333222 14456677888888877666
Q ss_pred HHHH
Q 009568 434 CLEG 437 (532)
Q Consensus 434 al~~ 437 (532)
|+..
T Consensus 344 Aitt 347 (355)
T 3tjz_B 344 AITT 347 (355)
T ss_dssp ----
T ss_pred HHHH
Confidence 5543
No 71
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.88 E-value=5e-09 Score=110.91 Aligned_cols=197 Identities=14% Similarity=0.070 Sum_probs=147.7
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHH-HHhhCCCCccchhhHHHHHHHhhcCC-cchh
Q 009568 244 PALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL-VELLGHPSPSVLIPALRTVGNIVTGD-DFQT 321 (532)
Q Consensus 244 ~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L-~~lL~~~~~~v~~~al~~L~nl~~~~-~~~~ 321 (532)
.++|. +..|+++++..+..||++|++++. ++.....+...+++..+ ..+|.+++..++..|+++|+||+... .+..
T Consensus 35 ~i~Pl-l~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 35 KILPV-LKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp TTHHH-HHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHHH-HHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 44554 466899999999999999999996 45555777788888765 56789999999999999999999653 4566
Q ss_pred HHHhhcCchHHHHHHhcCCC-------------c-------hhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh
Q 009568 322 QCIITYGALPYLLGLLTHSH-------------K-------KSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ 381 (532)
Q Consensus 322 ~~~~~~~~l~~L~~lL~~~~-------------~-------~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 381 (532)
..++..|+++.|..++.... . ..+...++++|.+++.++.+....+...+.++.|+..+.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 78889999999999885310 0 123456788899999888888888888889999999885
Q ss_pred cC---chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChH---HHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568 382 NA---EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIK---PLCDLFVCPDPRIVTVCLEGLENILKV 444 (532)
Q Consensus 382 ~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~---~L~~lL~~~d~~v~~~al~~L~~l~~~ 444 (532)
+. ..+++..|+.+|.+++.. +.+....+.+.+... .+..+.+..++ .+..+...|.|++..
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~~~~-~~~la~giL~Ni~~~ 259 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATGTDP-RAVMACGVLHNVFTS 259 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHSSCT-THHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcCCcH-HHHHHHHHHHhHhhh
Confidence 53 357999999999999987 556777777766533 33333333333 345567778887643
No 72
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.85 E-value=4.2e-07 Score=96.24 Aligned_cols=270 Identities=14% Similarity=0.121 Sum_probs=187.5
Q ss_pred cHHHHHHhhc---CCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCC--------HHHHHHHHHHHHH
Q 009568 118 VVPRFVEFLM---REDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPS--------DDVREQAVWALGN 186 (532)
Q Consensus 118 ~i~~Lv~lL~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~--------~~v~~~a~~~L~n 186 (532)
++..|-+.|. +++ +.++..|+.+|+-+..+... . ++..|...|.+.+ +.++..|+..||-
T Consensus 393 gl~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~---~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 393 GKKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR---D-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH---H-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH---H-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4666666775 444 89999999999999986543 1 3567777776544 6788889999998
Q ss_pred hhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhh-cCCCHHHHHHHH
Q 009568 187 VAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV-HSNDEEVLTDAC 265 (532)
Q Consensus 187 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~ 265 (532)
+...+.. .. ++..|...+ .+.+..+...++.+|..+.-+.. . ..++..|+..+ .+.+..++..++
T Consensus 464 a~~GS~~--ee-----v~e~L~~~L-~dd~~~~~~~AalALGli~vGTg--n----~~ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 464 AAMGSAN--IE-----VYEALKEVL-YNDSATSGEAAALGMGLCMLGTG--K----PEAIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp HSTTCCC--HH-----HHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCC--C----HHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhcCCCC--HH-----HHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccC--C----HHHHHHHHHHHhccCcHHHHHHHH
Confidence 7543321 11 356677777 33344556678888876643321 1 23445555544 355788999999
Q ss_pred HHHHHhccCChhHHHHHHHhCchHHHHHhhC-CCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchh
Q 009568 266 WALSYLSDGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKS 344 (532)
Q Consensus 266 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~ 344 (532)
.+|+.+..+.++. ++.++..|. +.++.++..++.+++.-..+.... ..++.|+..+.+..+..
T Consensus 530 lgLGll~~g~~e~---------~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~ 593 (963)
T 4ady_A 530 VGLALINYGRQEL---------ADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDD 593 (963)
T ss_dssp HHHHHHTTTCGGG---------GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHH
T ss_pred HHHHhhhCCChHH---------HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHH
Confidence 9999887766644 455555554 567888998888888766655432 23444555543333788
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH-hcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhc
Q 009568 345 IKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLL-QNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLF 423 (532)
Q Consensus 345 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL 423 (532)
+|..|+.+|+.+..++++ .++.++..+ ++.++.+|..|++||+.++.+.... .+++.|..++
T Consensus 594 VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~--------~aid~L~~L~ 656 (963)
T 4ady_A 594 VRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--------SAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--------HHHHHHHHHc
Confidence 999999999999887653 456666644 5679999999999999998754321 2567777888
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 009568 424 VCPDPRIVTVCLEGLENILK 443 (532)
Q Consensus 424 ~~~d~~v~~~al~~L~~l~~ 443 (532)
++.|..|+..|+.+|..+..
T Consensus 657 ~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 657 KDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp TCSSHHHHHHHHHHHHHHST
T ss_pred cCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999998864
No 73
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.84 E-value=3.7e-07 Score=75.53 Aligned_cols=217 Identities=16% Similarity=0.176 Sum_probs=166.9
Q ss_pred hhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCc
Q 009568 114 IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSP 192 (532)
Q Consensus 114 i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~ 192 (532)
.+..++..++.+|.++- -.+|..|+.++..++..-++....++ ..|+.+++ ++...+......++|.++...|
T Consensus 29 ~d~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~P 102 (253)
T 2db0_A 29 YDESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP 102 (253)
T ss_dssp HCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH
T ss_pred hhHHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCH
Confidence 34568889999999887 68999999999999997787766554 56666654 4667777778899999988777
Q ss_pred hhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 009568 193 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS 272 (532)
Q Consensus 193 ~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~ 272 (532)
+.-+. .++.+..-. .-.++.++-+..++|..+.+..| ....+++.-+..++.++|..-+..++..++-+.
T Consensus 103 e~v~~-----vVp~lfany-rigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alG 172 (253)
T 2db0_A 103 ELVKS-----MIPVLFANY-RIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMG 172 (253)
T ss_dssp HHHHH-----HHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCC
T ss_pred HHHHh-----hHHHHHHHH-hcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 64222 245555444 34489999999999999988753 344566777888899889888888888888887
Q ss_pred cCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHH
Q 009568 273 DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWT 352 (532)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 352 (532)
.+...+.. .++|.|..+|.+.+.-++..|+.+|++++..++..+..+ ...+.-+.+. +..+++..-..
T Consensus 173 en~~~yv~-----PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~-S~lv~~~V~eg 240 (253)
T 2db0_A 173 ENSFKYVN-----PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDT-SSLVNKTVKEG 240 (253)
T ss_dssp TTTHHHHG-----GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCS-CHHHHHHHHHH
T ss_pred ccCccccC-----cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCc-HHHHHHHHHHH
Confidence 77665433 789999999999999999999999999999988655432 2345556666 78888888888
Q ss_pred HHHHhc
Q 009568 353 ISNITA 358 (532)
Q Consensus 353 L~nl~~ 358 (532)
|+.++.
T Consensus 241 L~rl~l 246 (253)
T 2db0_A 241 ISRLLL 246 (253)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888765
No 74
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.80 E-value=6.9e-09 Score=95.18 Aligned_cols=189 Identities=15% Similarity=0.135 Sum_probs=142.6
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhC-CCCccchhhHHHHHHHhhcCCcchhHH
Q 009568 245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDFQTQC 323 (532)
Q Consensus 245 ~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~ 323 (532)
+-+.+...+.+.++..+..++..|..++.+.+....... ..+++.|...+. +.+..++..|+.+++.++..-......
T Consensus 16 l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 16 MPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp SCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred CCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 334577888899999999999999988765221100001 145777888885 889999999999999999654332222
Q ss_pred HhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC
Q 009568 324 IITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGT 403 (532)
Q Consensus 324 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 403 (532)
.. ..++|.++..+.+. ++.+|..|+.+|..++...+ .. .+++.+...+.+.++.+|..++..|..++....
T Consensus 95 ~~-~~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 95 YA-SACVPSLLEKFKEK-KPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp HH-HHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred HH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 22 25789999999998 99999999999999987432 11 257788899999999999999999999765433
Q ss_pred HH--HHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568 404 HE--QIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG 445 (532)
Q Consensus 404 ~~--~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (532)
++ ...++- .+++.|..+|.+.+++++..+..++..+....
T Consensus 166 ~~~~~~~~l~--~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 166 PTALNKKLLK--LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp GGGCCHHHHH--HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 22 123322 47999999999999999999999999987643
No 75
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.72 E-value=6.6e-08 Score=88.58 Aligned_cols=186 Identities=15% Similarity=0.224 Sum_probs=142.5
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc-CCCHHHHHHHHHHHHHhccCChhHHHHHH
Q 009568 205 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVI 283 (532)
Q Consensus 205 ~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~ 283 (532)
+.+...+ .+.+...+..++..|..++...+.........+++.|...+. +.+..++..++.+++.++..-........
T Consensus 18 ~~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3466666 677889999999999998876322222234678889999995 88999999999999999854332222222
Q ss_pred HhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHH
Q 009568 284 EAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRD 362 (532)
Q Consensus 284 ~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~ 362 (532)
..+++.++..+.+++..++..|..+|..++.... .. .+++.+...|.+. ++.+|..++..|+.+... .++
T Consensus 97 -~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 97 -SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp -HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGG
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCC
Confidence 2688999999999999999999999999987543 11 3678899999988 999999999999997653 333
Q ss_pred H-HHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009568 363 Q-IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG 401 (532)
Q Consensus 363 ~-~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 401 (532)
. ....+. .++|.|+.++.+.++++|..|..+++.++..
T Consensus 168 ~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 168 ALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp GCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 1 122233 3789999999999999999999999998763
No 76
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.68 E-value=5.6e-06 Score=80.61 Aligned_cols=322 Identities=11% Similarity=0.101 Sum_probs=192.0
Q ss_pred CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCc---hhHHHHHhcCCh-HHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568 159 HGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSP---RCRDLVLSQGAL-IPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (532)
Q Consensus 159 ~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~---~~~~~~~~~~~l-~~L~~ll~~~~~~~~~~~a~~~L~~L~~~ 233 (532)
..++..++.+|.. .+.++.+..+..+.-+..+.+ .....+.+.... ..+........+.-....++.+++.++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 3567788888875 678888999988888887766 322233332221 12222222334555556666666666543
Q ss_pred CCCCCcccccchHH--HHHHhhcC-CCHHHHHHHHHHHHHhccCChhHHHHHHHh--CchHHHHHhhC----CC------
Q 009568 234 KPQPPFDQVRPALP--ALAQLVHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVELLG----HP------ 298 (532)
Q Consensus 234 ~~~~~~~~~~~~l~--~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~l~~L~~lL~----~~------ 298 (532)
.+. .......++. -+...|.. ++...+.-++.++..+..... ....+.+. ..++.++.++. +.
T Consensus 156 ~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~-~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 156 GLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp TTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred CCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchh-HHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 222 2222233333 34444544 234445567777777765533 33444432 24555544332 11
Q ss_pred -------CccchhhHHHHHHHhhcCCcchhHHHhhcCch--HHHHHHhcCCCchhHHHHHHHHHHHHhcCC----HHHHH
Q 009568 299 -------SPSVLIPALRTVGNIVTGDDFQTQCIITYGAL--PYLLGLLTHSHKKSIKKEACWTISNITAGN----RDQIQ 365 (532)
Q Consensus 299 -------~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l--~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~----~~~~~ 365 (532)
...++..++.|++-++...+ ....+...++. +.|+.+++....++|.+-++.+|.|+.... ...+.
T Consensus 234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~ 312 (480)
T 1ho8_A 234 ATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK 312 (480)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred cccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence 23457889999998887544 55556665543 567777876657899999999999999754 12233
Q ss_pred H-HHHcCCHHHHHHHHhcC---chhHHHHHHHHHHHhh---------------------cCCCHHHHHHHHHc-------
Q 009568 366 A-VIDAGLVGPLVNLLQNA---EFDIKKEAAWAISNAT---------------------SGGTHEQIKYLVRE------- 413 (532)
Q Consensus 366 ~-l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~nl~---------------------~~~~~~~~~~l~~~------- 413 (532)
. ++..++ +.++..|... |+++....-.....+- .......-+.|+..
T Consensus 313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e 391 (480)
T 1ho8_A 313 QLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK 391 (480)
T ss_dssp HHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred HHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence 2 223334 4455666542 6666543333222211 11111111122221
Q ss_pred ---CChHHHHhhcCC----------CCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcC
Q 009568 414 ---GCIKPLCDLFVC----------PDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH 480 (532)
Q Consensus 414 ---~~l~~L~~lL~~----------~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~ 480 (532)
.++..|+++|++ .|+.+..+|+.=|..+++..+.. ...+++.|+-+.+..|+.|
T Consensus 392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~g-------------r~i~~~lg~K~~VM~Lm~h 458 (480)
T 1ho8_A 392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES-------------IDVLDKTGGKADIMELLNH 458 (480)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH-------------HHHHHHHSHHHHHHHHTSC
T ss_pred cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcch-------------hHHHHHcCcHHHHHHHhcC
Confidence 246888888873 46788888888888888876543 5678899999999999999
Q ss_pred CCHHHHHHHHHHHHHhC
Q 009568 481 DNNEIYEKAVKILETYW 497 (532)
Q Consensus 481 ~~~~v~~~a~~il~~~~ 497 (532)
+|++|+..|...+.++.
T Consensus 459 ~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 459 SDSRVKYEALKATQAII 475 (480)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999998887753
No 77
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.61 E-value=1.3e-06 Score=75.75 Aligned_cols=187 Identities=16% Similarity=0.151 Sum_probs=149.1
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~ 153 (532)
+.+..+++.|+..|+.++..|+..+.++++.- +.......-..++|.++.++.+.+ ..+...|+.||..+..+.+-..
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCH
Confidence 36788999999999999999999999999863 233444444568999999999888 9999999999999998665444
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (532)
Q Consensus 154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~ 233 (532)
..+.. ++.+|..++.++++-+++.++..++.+-.-.+ .+ +++..+..++ .+.+..++..++.++.+++..
T Consensus 111 ~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~-~~------~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 111 KTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED-SK------LVRTYINELV-VSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp HHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-CH------HHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGG
T ss_pred HHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-hH------HHHHHHHHHH-hCCChhHHHHHHHHHHHhhcc
Confidence 44442 45888999999999999999999999832222 12 2366788888 899999999999999999986
Q ss_pred CCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 009568 234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG 274 (532)
Q Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~ 274 (532)
. .+......++.-+..+|++.|+.++..|+.++-.+...
T Consensus 181 S--~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 181 S--ADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp C--SSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred c--CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 4 22334566777778889999999999999999888755
No 78
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.58 E-value=2.6e-07 Score=84.62 Aligned_cols=190 Identities=11% Similarity=0.082 Sum_probs=139.6
Q ss_pred HHHhhhhhhhHHHHHHHHHhhh-ccCCCCCCC--cccccchHHHHHHhh-cCCCHHHHHHHHHHHHHhccCCh-hHHH-H
Q 009568 208 LAQLNERAKLSMLRNATWTLSN-FCRGKPQPP--FDQVRPALPALAQLV-HSNDEEVLTDACWALSYLSDGTN-DKIQ-A 281 (532)
Q Consensus 208 ~~ll~~~~~~~~~~~a~~~L~~-L~~~~~~~~--~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~l~~~~~-~~~~-~ 281 (532)
...+ .+.+..-+..++..|.. ++.+.+... ......++..|.+.+ .+.+..++..++.+++.++.+-. ..+. .
T Consensus 22 ~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 22 QERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4445 56778888899999999 876543222 223356788899999 68899999999999999985322 1122 1
Q ss_pred HHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH
Q 009568 282 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNR 361 (532)
Q Consensus 282 ~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 361 (532)
.. ..+++.++..+.+....++..+..++-.++...+.......-..+++.|...|.+. ++.+|..++.+|+.++...+
T Consensus 101 y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 101 YV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCC
T ss_pred HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcC
Confidence 22 24789999999998899999999999888874431110000113677889999998 99999999999999986332
Q ss_pred ---HHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009568 362 ---DQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 400 (532)
Q Consensus 362 ---~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 400 (532)
......+...++|.|..++.+.+..||..|..+++.++.
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 444444534589999999999999999999999998864
No 79
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.52 E-value=1.9e-08 Score=82.46 Aligned_cols=120 Identities=18% Similarity=0.161 Sum_probs=91.8
Q ss_pred hCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 009568 285 AGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364 (532)
Q Consensus 285 ~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 364 (532)
...++.+..+|.++++.++..|+++|+.+.. + .++.|..+|.++ ++.+|..|+|+|+++.. +.
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~--~~-- 73 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESLSNE-DWRIRGAAAWIIGNFQD--ER-- 73 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGGGCS-CHHHHHHHHHHHGGGCS--HH--
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHHcCC-CHHHHHHHHHHHHhcCC--HH--
Confidence 4678889999999999999999999987642 1 258899999988 99999999999999853 22
Q ss_pred HHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHH
Q 009568 365 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLEN 440 (532)
Q Consensus 365 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~ 440 (532)
.++.|+..+.++++.||..|+++|+++.. + ..++.|..+++++++.++..+..+|..
T Consensus 74 -------a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 74 -------AVEPLIKLLEDDSGFVRSGAARSLEQIGG---E---------RVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -------HHHHHHHHHHHCCTHHHHHHHHHHHHHCS---H---------HHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -------HHHHHHHHHcCCCHHHHHHHHHHHHHhCc---H---------HHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 46788889999999999999999999852 2 247788889999999999999988764
No 80
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.50 E-value=3.9e-07 Score=83.39 Aligned_cols=193 Identities=11% Similarity=0.096 Sum_probs=139.9
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHH-hhCCCchhHHHHHh-cCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCC-CCCc-
Q 009568 164 IFVKLLASPSDDVREQAVWALGN-VAGDSPRCRDLVLS-QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP-QPPF- 239 (532)
Q Consensus 164 ~L~~lL~~~~~~v~~~a~~~L~n-l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~~~- 239 (532)
.+...+.+.++.-|..++..|.. ++...+........ ..++..|...+.++.+..++..++.++..|+.+-. ..-.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35566788999999999999999 87543322100000 12355666666556788899999999999996543 2222
Q ss_pred ccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHH-HHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCc
Q 009568 240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAV-IEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 318 (532)
Q Consensus 240 ~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~ 318 (532)
.....++|.++..+.+..+.|+..+..++-.++...+...... + ..+++.|+..|.+.++.++..++.+|+.++....
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l-~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRN-EDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTT-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 4556789999999998899999998888887775331100000 1 1367788899999999999999999999997655
Q ss_pred c---hhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568 319 F---QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (532)
Q Consensus 319 ~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 358 (532)
. .....+...++|.+..++.++ ++.||..|..+++.++.
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK 220 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 3 222334248999999999998 99999999999999875
No 81
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.49 E-value=1.6e-05 Score=87.35 Aligned_cols=340 Identities=11% Similarity=0.083 Sum_probs=189.7
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHH-HhhcCCCCHHHHHHHHHHHHHHhcCC---h--hhHHHHHh
Q 009568 85 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFV-EFLMREDYPQLQFEAAWALTNIASGT---S--ENTKVVID 158 (532)
Q Consensus 85 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv-~lL~~~~~~~~~~~a~~~L~~l~~~~---~--~~~~~i~~ 158 (532)
+.++.+...++.++...++ .-+...++..++++.+. .+|. + ++++..|+.||..+.... + .....+..
T Consensus 206 ~~~~~l~~~~L~~l~s~l~---WI~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~ 279 (1023)
T 4hat_C 206 GASSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL 279 (1023)
T ss_dssp CSSCHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH---hCCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence 3456677778888888886 46677888899999999 8885 3 789999999999998722 2 12211110
Q ss_pred --CCChHHH--------------HHhhCCCCHHHHHHHHHHHHHhhC-------CCchhHHHHHhcCChHHHHHHhhhhh
Q 009568 159 --HGAVPIF--------------VKLLASPSDDVREQAVWALGNVAG-------DSPRCRDLVLSQGALIPLLAQLNERA 215 (532)
Q Consensus 159 --~g~i~~L--------------~~lL~~~~~~v~~~a~~~L~nl~~-------~~~~~~~~~~~~~~l~~L~~ll~~~~ 215 (532)
.+.++.+ ...-...+.+..+..+.++..+.. ..+..+..+. .++..|+.+- ...
T Consensus 280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~ 356 (1023)
T 4hat_C 280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE 356 (1023)
T ss_dssp HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence 0111111 111112345666666666655432 1122222211 1122333332 345
Q ss_pred hhHHHHHHHHHhhhccCCCC--CCCcccccch----HHHHHHhhcCCC--------------------HH-HHHHHH-HH
Q 009568 216 KLSMLRNATWTLSNFCRGKP--QPPFDQVRPA----LPALAQLVHSND--------------------EE-VLTDAC-WA 267 (532)
Q Consensus 216 ~~~~~~~a~~~L~~L~~~~~--~~~~~~~~~~----l~~L~~lL~~~d--------------------~~-v~~~a~-~~ 267 (532)
+.++...++..+..|+..-. ........++ ++.+++-+..+. ++ ...... .+
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~ 436 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence 67777888777777765321 1122223333 334443333221 01 111011 22
Q ss_pred HHHhccCC-hhHHHHHHHhCchHHHHHhhCC--CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcC-----
Q 009568 268 LSYLSDGT-NDKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH----- 339 (532)
Q Consensus 268 L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~----- 339 (532)
|.+++.-. ++... -+++.+...+.. .+|..+..+++++|.++.+.......-.-..+++.|+.++.+
T Consensus 437 L~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d 511 (1023)
T 4hat_C 437 LVYLTHLNVIDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD 511 (1023)
T ss_dssp HHHHHHHCHHHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHhccCHHHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc
Confidence 22322111 11111 123344444443 578999999999999998766432222233677888888764
Q ss_pred CCchhHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHH--------
Q 009568 340 SHKKSIKKEACWTISNITA---GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIK-------- 408 (532)
Q Consensus 340 ~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~-------- 408 (532)
. ...++..++|++|.++. .+++.... ++..|+..+..+++.++..|++++.+++..+......
T Consensus 512 ~-k~~v~~t~~~~lGry~~wl~~~~~~L~~-----vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p 585 (1023)
T 4hat_C 512 N-KAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEP 585 (1023)
T ss_dssp H-HHHHHHHHHHHHHTCHHHHHHCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSC
T ss_pred c-hHHHHHHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCch
Confidence 2 45577789999998875 33443333 4556777777778899999999999999854332210
Q ss_pred HHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 009568 409 YLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGE 446 (532)
Q Consensus 409 ~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 446 (532)
++- .++..+...+..-++.-+..+.+++..++....
T Consensus 586 ~~~--~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 586 FIQ--TIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHH--HHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred hHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 111 133444444444566666777788887776543
No 82
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.48 E-value=9.6e-06 Score=87.11 Aligned_cols=301 Identities=13% Similarity=0.160 Sum_probs=209.8
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC---h
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT---S 150 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~---~ 150 (532)
..+..+++.+...+...+..++..+..++.+.... ..+..+++..|.+.+.+.. .. ..|+.++..++... +
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~ 87 (986)
T 2iw3_A 14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIE---HDVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSP 87 (986)
T ss_dssp HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS---SSCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCT
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHhccccc---cccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCC
Confidence 45666777777655666678888888887753111 1122368888888888765 23 88889999998522 2
Q ss_pred hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhh
Q 009568 151 ENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN 229 (532)
Q Consensus 151 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~ 229 (532)
..-..++ +.++.++..+.+....++..|-.++..++..- +... ..+++.|+..+.....-..+..++.++..
T Consensus 88 ~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~ 160 (986)
T 2iw3_A 88 SVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSA 160 (986)
T ss_dssp TTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 2223333 67899999988888899999888887776433 3222 22588888888444466788889999999
Q ss_pred ccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC--ChhHHHHHHHhCchHHHHHhhCCCCccchhhHH
Q 009568 230 FCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG--TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPAL 307 (532)
Q Consensus 230 L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al 307 (532)
|+...+.........++|.+...+.+..++|...+..++..+|.. +.+. . ..+|.|+..+.+++. ...++
T Consensus 161 ~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-~-----~~~~~~~~~~~~p~~--~~~~~ 232 (986)
T 2iw3_A 161 MVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-E-----RFIPSLIQCIADPTE--VPETV 232 (986)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-G-----GGHHHHHHHHHCTTH--HHHHH
T ss_pred HHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-h-----hhHHHHHHHhcChhh--hHHHH
Confidence 987643323334577889999999999999999999988887742 2211 1 678999999988753 44555
Q ss_pred HHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHHhc-Cc
Q 009568 308 RTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA--GNRDQIQAVIDAGLVGPLVNLLQN-AE 384 (532)
Q Consensus 308 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~-~~ 384 (532)
..|+.-+.-.... ...+ +=++|.|.+-|... ...+++.++-++.|+|. .+|.....++.. ++|.|-...+. .+
T Consensus 233 ~~l~~~tfv~~v~-~~~l-~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~-l~p~~~~~~~~~~~ 308 (986)
T 2iw3_A 233 HLLGATTFVAEVT-PATL-SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLGK-LLPGLKSNFATIAD 308 (986)
T ss_dssp HHHTTCCCCSCCC-HHHH-HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHTT-THHHHHHHTTTCCS
T ss_pred HHhhcCeeEeeec-chhH-HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhhh-hhhHHHHHhhccCC
Confidence 6555443322211 1111 12467788888877 88899999999999997 678777777643 78888777765 48
Q ss_pred hhHHHHHHHHHHHhh
Q 009568 385 FDIKKEAAWAISNAT 399 (532)
Q Consensus 385 ~~v~~~a~~aL~nl~ 399 (532)
|++|..|..|+..+.
T Consensus 309 pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 309 PEAREVTLRALKTLR 323 (986)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998888887773
No 83
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.47 E-value=2.3e-08 Score=81.91 Aligned_cols=121 Identities=18% Similarity=0.174 Sum_probs=91.7
Q ss_pred CCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 009568 116 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195 (532)
Q Consensus 116 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 195 (532)
...++.++.+|++++ +.+|..|+++|+.+.. ..++.|+.+|.++++.+|..++++|+++.. +
T Consensus 11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~--- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E--- 72 (131)
T ss_dssp ----------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence 346788899999887 8999999999887653 126889999999999999999999999842 1
Q ss_pred HHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 009568 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYL 271 (532)
Q Consensus 196 ~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l 271 (532)
..++.|+..+ .+.++.++..++|+|..+.. ...++.|..++.++++.++..++++|..+
T Consensus 73 ------~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 ------RAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ------HHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 1377888888 77889999999999998863 35788999999988999999999888653
No 84
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.43 E-value=1.4e-05 Score=88.58 Aligned_cols=329 Identities=11% Similarity=0.019 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhc---------------CCCCHHHHHHHHHHHHHHhcCCh--h
Q 009568 89 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLM---------------REDYPQLQFEAAWALTNIASGTS--E 151 (532)
Q Consensus 89 ~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~---------------~~~~~~~~~~a~~~L~~l~~~~~--~ 151 (532)
.++..++.++...+... ..+.. ....+++.+.. |. ..++++++..|+.+|..+....+ +
T Consensus 204 ~~~~~al~~l~~~~~~~-~ip~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~ 279 (971)
T 2x1g_F 204 SNMNRAVKCVGTWIKNI-GYTIE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHN 279 (971)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCGG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGG
T ss_pred hHHHHHHHHHHHHHhhC-CcCcc--ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccc
Confidence 57778888888776520 11222 34456777766 41 11237899999999999987422 1
Q ss_pred hHHHHHhCCChHHHHHh-------hCCCC---HHHHHHHHHHHHHhhCCCch-hHHHHH-----h----cCChHHHHHHh
Q 009568 152 NTKVVIDHGAVPIFVKL-------LASPS---DDVREQAVWALGNVAGDSPR-CRDLVL-----S----QGALIPLLAQL 211 (532)
Q Consensus 152 ~~~~i~~~g~i~~L~~l-------L~~~~---~~v~~~a~~~L~nl~~~~~~-~~~~~~-----~----~~~l~~L~~ll 211 (532)
....+. .+++.++.+ +...+ .......+..+..++..... +.+.+. . ...++.++.+.
T Consensus 280 ~~~~~~--~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~ 357 (971)
T 2x1g_F 280 YPKTAF--VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCT 357 (971)
T ss_dssp CHHHHH--HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHH--HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHH
Confidence 111111 123333332 23334 26666667776666532221 110000 0 11233344433
Q ss_pred hh----hhhhHHHHHHHHHhhhccCCC--------CCCCc----ccccchHHHHHHhhcCC-C-------H-------HH
Q 009568 212 NE----RAKLSMLRNATWTLSNFCRGK--------PQPPF----DQVRPALPALAQLVHSN-D-------E-------EV 260 (532)
Q Consensus 212 ~~----~~~~~~~~~a~~~L~~L~~~~--------~~~~~----~~~~~~l~~L~~lL~~~-d-------~-------~v 260 (532)
.. ..+..+...+++++..++... ..... .....+++.++..+..+ + + ..
T Consensus 358 ~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~ 437 (971)
T 2x1g_F 358 DKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCY 437 (971)
T ss_dssp HCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHH
T ss_pred cCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHH
Confidence 12 246788899999988886521 01111 11233444444444322 1 1 23
Q ss_pred HHHHHHHHHHhccCCh-hHHHHHHHhCchHHHHHhhCC-----CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHH
Q 009568 261 LTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLGH-----PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLL 334 (532)
Q Consensus 261 ~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~-----~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~ 334 (532)
+..+..++..++.... .... -+++.+...+.+ .++..+..++.+++.++.+...... ..++.++
T Consensus 438 R~~~~~~l~~~~~~~~~~~l~-----~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~ 507 (971)
T 2x1g_F 438 RQDISDTFMYCYDVLNDYILE-----ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-----RQIPRLM 507 (971)
T ss_dssp HHHHHHHHHHHHTTCTTHHHH-----HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-----HHHHHHH
Confidence 4555556655554332 1111 122333333332 6788999999999999987653321 2333333
Q ss_pred HHh---c--CCCchhHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHH
Q 009568 335 GLL---T--HSHKKSIKKEACWTISNITA---GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQ 406 (532)
Q Consensus 335 ~lL---~--~~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~ 406 (532)
.++ . +. ++.+|..++|+++.++. .++.... .+++.|+..+. +.++..|++++.+++.......
T Consensus 508 ~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l~-----~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l 578 (971)
T 2x1g_F 508 RVLAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYIP-----PAINLLVRGLN---SSMSAQATLGLKELCRDCQLQL 578 (971)
T ss_dssp HHHHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CHH-----HHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHHH-----HHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhc
Confidence 333 2 34 78999999999999885 1222221 24566777672 7899999999999997654444
Q ss_pred HHHHHHcCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHh
Q 009568 407 IKYLVREGCIKPLCDLFVC--PDPRIVTVCLEGLENILKV 444 (532)
Q Consensus 407 ~~~l~~~~~l~~L~~lL~~--~d~~v~~~al~~L~~l~~~ 444 (532)
..++ ..++..|..++.. -+.+.+..+++++..++..
T Consensus 579 ~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 579 KPYA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred cccH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 4442 2467777777776 3578888999999999875
No 85
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.34 E-value=6.2e-05 Score=83.19 Aligned_cols=296 Identities=10% Similarity=0.091 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC------CCCHHHHHHHHHHHHHhhCCCchhHHHHHhc-----
Q 009568 133 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA------SPSDDVREQAVWALGNVAGDSPRCRDLVLSQ----- 201 (532)
Q Consensus 133 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~------~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~----- 201 (532)
..|..|..+|..++....+ .++. .+++.+.+.+. +++...++.|+.+++.++......... ...
T Consensus 376 s~R~aa~~~L~~l~~~~~~---~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~-~~~~~~~~ 450 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNEV---LVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAG-VSSTNNLL 450 (960)
T ss_dssp CHHHHHHHHHHHHHHHCHH---HHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTB-CCCBCTTC
T ss_pred CcHHHHHHHHHHHHHHcch---hHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCC-cccccccc
Confidence 4677788888888763321 2211 12344444454 467889999999999998532111000 000
Q ss_pred CChH----HHHHHhhhhh---hhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 009568 202 GALI----PLLAQLNERA---KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG 274 (532)
Q Consensus 202 ~~l~----~L~~ll~~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~ 274 (532)
...+ .++..+ .+. ++-++..++|+++.++..- .......+++.++..|.+++..|+..|+++|.+++..
T Consensus 451 ~l~~~l~~~v~p~l-~~~~~~~p~vr~~a~~~lg~~~~~~---~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 451 NVVDFFTKEIAPDL-TSNNIPHIILRVDAIKYIYTFRNQL---TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp CHHHHHHHHTHHHH-HCSSCSCHHHHHHHHHHHHHTGGGS---CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHhHHHh-cCCCCCCceehHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 1111 223334 333 7889999999999999863 2345677888899989888899999999999998863
Q ss_pred C-----------hhHHHHHHHhCchHHHHHhhCCCC-----ccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHh-
Q 009568 275 T-----------NDKIQAVIEAGVCPRLVELLGHPS-----PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLL- 337 (532)
Q Consensus 275 ~-----------~~~~~~~~~~~~l~~L~~lL~~~~-----~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL- 337 (532)
. .+.....+ ..+++.|+.++.... ......++.+|+.++....+....... .+++.|...+
T Consensus 527 ~~~~~~~~~~~~~~~l~p~l-~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~ 604 (960)
T 1wa5_C 527 RESNTSPAFIFHKEDISNST-EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVT 604 (960)
T ss_dssp BSCSSSCCBSSCGGGTTTTH-HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHH
T ss_pred ccccccccccccHHHhhhhH-HHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHH
Confidence 1 11111111 145566666666531 113456677777765422211111111 2334444433
Q ss_pred ---cCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 009568 338 ---THSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE 413 (532)
Q Consensus 338 ---~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 413 (532)
+++.++..+..++.+|+.++.. .++....+. ..++|.+...+.....++...+...+..+..... ....++.
T Consensus 605 ~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~-~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~-- 680 (960)
T 1wa5_C 605 IMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSA-TIPESIK-- 680 (960)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCS-SCCTTTG--
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH-HHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhcc-CCCHHHH--
Confidence 3443667777788899988874 444443433 3378888888887766777777777776654320 0001111
Q ss_pred CChHHHH--hhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568 414 GCIKPLC--DLFVCPDPRIVTVCLEGLENILKVG 445 (532)
Q Consensus 414 ~~l~~L~--~lL~~~d~~v~~~al~~L~~l~~~~ 445 (532)
.+++.+. ..++... .+..++.+|..++..+
T Consensus 681 ~~~~~l~~~~~~~~~~--~~~~~~~~L~~~~~~~ 712 (960)
T 1wa5_C 681 PLAQPLLAPNVWELKG--NIPAVTRLLKSFIKTD 712 (960)
T ss_dssp GGHHHHTSGGGGCCTT--THHHHHHHHHHHHHHH
T ss_pred HHHHHHcCHHHhcCCC--CchhHHHHHHHHHHhC
Confidence 1344444 4444332 3445566666666544
No 86
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.26 E-value=0.00018 Score=70.10 Aligned_cols=324 Identities=12% Similarity=0.097 Sum_probs=191.2
Q ss_pred CCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh---hhHHHHHhCCCh-HHHHH-hhCCCCHHHHHHHHHHHHHhhCC
Q 009568 116 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS---ENTKVVIDHGAV-PIFVK-LLASPSDDVREQAVWALGNVAGD 190 (532)
Q Consensus 116 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~---~~~~~i~~~g~i-~~L~~-lL~~~~~~v~~~a~~~L~nl~~~ 190 (532)
...+..++.+|......++....+..+..+...++ .....+.+..-. ..+.. ++..++.-....+..++..++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 45778899999876668888888888888887665 444444444322 22333 33334455556666666666533
Q ss_pred CchhHHHHHhcCChH--HHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccc--cchHHHHHHhhcC-----------
Q 009568 191 SPRCRDLVLSQGALI--PLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV--RPALPALAQLVHS----------- 255 (532)
Q Consensus 191 ~~~~~~~~~~~~~l~--~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~--~~~l~~L~~lL~~----------- 255 (532)
.+...+.+. ..+. -++..|....+......++.+|..|.+.+........ ...+|.++.++..
T Consensus 156 ~~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 156 GLHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp TTCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred CCccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 332111110 0112 2344443222233345678888888776533322211 2345655543331
Q ss_pred ----C--CHHHHHHHHHHHHHhccCChhHHHHHHHhCch--HHHHHhhCC-CCccchhhHHHHHHHhhcCCcc----hhH
Q 009568 256 ----N--DEEVLTDACWALSYLSDGTNDKIQAVIEAGVC--PRLVELLGH-PSPSVLIPALRTVGNIVTGDDF----QTQ 322 (532)
Q Consensus 256 ----~--d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l--~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~----~~~ 322 (532)
+ ..+++..++.|++-++.... ....+...++. +.|+..++. ....+..-++.++.|+...... ...
T Consensus 234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~ 312 (480)
T 1ho8_A 234 ATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK 312 (480)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred cccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence 1 24678999999998887654 44555554533 556666644 5678888899999999986531 112
Q ss_pred -HHhhcCchHHHHHHhcCC-C-chhHHHHHHHHHHHHhc-----------------C----CHHHHH-HHH--------H
Q 009568 323 -CIITYGALPYLLGLLTHS-H-KKSIKKEACWTISNITA-----------------G----NRDQIQ-AVI--------D 369 (532)
Q Consensus 323 -~~~~~~~l~~L~~lL~~~-~-~~~v~~~a~~~L~nl~~-----------------~----~~~~~~-~l~--------~ 369 (532)
.++..++++ ++..|... . |+++....-+....+-. | +|-+.. .+. +
T Consensus 313 ~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e 391 (480)
T 1ho8_A 313 QLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK 391 (480)
T ss_dssp HHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred HHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence 233345544 45555322 1 45554433332221211 0 111111 111 1
Q ss_pred --cCCHHHHHHHHhc----------CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHH
Q 009568 370 --AGLVGPLVNLLQN----------AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEG 437 (532)
Q Consensus 370 --~~~i~~L~~ll~~----------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~ 437 (532)
..++..|+.+|.+ .++.+..-||.=|+.++.. .|+....+-+.|+-..++.++.++|++|+..||.|
T Consensus 392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~-~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~a 470 (480)
T 1ho8_A 392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVEL-LPESIDVLDKTGGKADIMELLNHSDSRVKYEALKA 470 (480)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHH-CTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHH-CcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence 1247889999973 3678888899999999886 34666666677999999999999999999999999
Q ss_pred HHHHHHh
Q 009568 438 LENILKV 444 (532)
Q Consensus 438 L~~l~~~ 444 (532)
+..++..
T Consensus 471 vQklm~~ 477 (480)
T 1ho8_A 471 TQAIIGY 477 (480)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998753
No 87
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.21 E-value=4.6e-05 Score=84.23 Aligned_cols=335 Identities=9% Similarity=0.032 Sum_probs=174.9
Q ss_pred CCChHHHHHHHHHHHHHhcCCC--CCchhHh-hhCCcHHH----HHHhhcCC--CCHHHHHHHHHHHHHHhcCChhhHHH
Q 009568 85 SDDSSLQLEATTQFRKLLSIER--SPPIEEV-IQSGVVPR----FVEFLMRE--DYPQLQFEAAWALTNIASGTSENTKV 155 (532)
Q Consensus 85 s~~~~~~~~a~~~l~~l~~~~~--~~~~~~~-i~~g~i~~----Lv~lL~~~--~~~~~~~~a~~~L~~l~~~~~~~~~~ 155 (532)
++++..+..|+.++..++.+.. ..+.... ....+.+. ++..|.++ .++.+|..|+|+++.++..-. ...
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~~ 493 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KAQ 493 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HHH
Confidence 5667788889999998875321 1011000 00022232 23334555 139999999999999987421 111
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-------chh-HHHHHh--cCChHHHHHHhhhh----hhhHHHH
Q 009568 156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-------PRC-RDLVLS--QGALIPLLAQLNER----AKLSMLR 221 (532)
Q Consensus 156 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-------~~~-~~~~~~--~~~l~~L~~ll~~~----~~~~~~~ 221 (532)
+ ..+++.++..|.+++..++..|+++|.+++... +.+ +..+.. ..++..|+.++... .+.....
T Consensus 494 l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e 571 (960)
T 1wa5_C 494 L--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE 571 (960)
T ss_dssp H--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred H--HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence 1 245688888888888999999999999998631 111 111110 11344445555332 1111223
Q ss_pred HHHHHhhhccCCCCCCCcccccchHHHHHHhhc-----CCCHHHHHHHHHHHHHhccC-ChhHHHHHHHhCchHHHHHhh
Q 009568 222 NATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-----SNDEEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL 295 (532)
Q Consensus 222 ~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~-----~~d~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~lL 295 (532)
.++.++..++......-......+++.|...+. .++......++.+++.++.. .++... -+...++|.+...|
T Consensus 572 ~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~~~~~~~p~~~~iL 650 (960)
T 1wa5_C 572 FLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTFLTVF 650 (960)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHHH
Confidence 444444444332211112233445555555443 23667777888888888765 333333 33446788888888
Q ss_pred CCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHH--HHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCH
Q 009568 296 GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLL--GLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 373 (532)
Q Consensus 296 ~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~--~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i 373 (532)
......+...++.+++.+..........+. .+++.+. ..+... ......+.+|.++....++.+.. ++ .++
T Consensus 651 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~--~~~~~l~~~~~~~~~---~~~~~~~~~L~~~~~~~~~~~~~-~~-~~l 723 (960)
T 1wa5_C 651 SEDIQEFIPYVFQIIAFVVEQSATIPESIK--PLAQPLLAPNVWELK---GNIPAVTRLLKSFIKTDSSIFPD-LV-PVL 723 (960)
T ss_dssp HTTCTTTHHHHHHHHHHHHHHCSSCCTTTG--GGHHHHTSGGGGCCT---TTHHHHHHHHHHHHHHHGGGCSC-SH-HHH
T ss_pred HhhhHhhHHHHHHHHHHHHHhccCCCHHHH--HHHHHHcCHHHhcCC---CCchhHHHHHHHHHHhChHHHHH-HH-HHH
Confidence 776667888888888887754321111111 2334444 333332 23334555666654311110000 00 012
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHhhcCCCHH-HHHHHHHcCChHHHHhhcCCC-CHHHHHHHH
Q 009568 374 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHE-QIKYLVREGCIKPLCDLFVCP-DPRIVTVCL 435 (532)
Q Consensus 374 ~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~-~~~~l~~~~~l~~L~~lL~~~-d~~v~~~al 435 (532)
..+..++.+.. ....+.+++..++...... ...++-. +++.++..+... .++++...+
T Consensus 724 ~~~~~~~~~~~--~~~~a~~ll~~i~~~~~~~~~~~yl~~--i~~~l~~~l~~~~~~~~~~~~l 783 (960)
T 1wa5_C 724 GIFQRLIASKA--YEVHGFDLLEHIMLLIDMNRLRPYIKQ--IAVLLLQRLQNSKTERYVKKLT 783 (960)
T ss_dssp HHHHHHHTCTT--THHHHHHHHHHHHHHSCHHHHGGGHHH--HHHHHHHGGGSSCCHHHHHHHH
T ss_pred HHHHHHhCCCc--ccchHHHHHHHHHHHCCHHHHHHHHHH--HHHHHHHHHhhCCcHhHHHHHH
Confidence 22333333333 2378888888887755544 3333322 566666666544 355543333
No 88
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.20 E-value=0.00031 Score=78.33 Aligned_cols=340 Identities=10% Similarity=0.090 Sum_probs=182.3
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC--hh---hHHHHHh--
Q 009568 86 DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT--SE---NTKVVID-- 158 (532)
Q Consensus 86 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~--~~---~~~~i~~-- 158 (532)
++..++..++.++...++ ..+...+.+..+++.+.+.+.. + ++++..|+.||..+.... +. ....+..
T Consensus 207 ~~~~~~~~aL~~l~~~l~---wi~~~~~~~~~ll~~l~~~~l~-~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~ 281 (1049)
T 3m1i_C 207 SSSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMT-S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFF 281 (1049)
T ss_dssp CCHHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHH-S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh---hCCHHHHhhhhHHHHHHHHhCC-C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Confidence 346678888888888776 2344556667788888843332 4 899999999999998642 21 1111110
Q ss_pred CCChHHHHH-hh-------------CCCCHHHHHHHHHHHHHhhC-------CCchhHHHHHhcCChHHHHHHhhhhhhh
Q 009568 159 HGAVPIFVK-LL-------------ASPSDDVREQAVWALGNVAG-------DSPRCRDLVLSQGALIPLLAQLNERAKL 217 (532)
Q Consensus 159 ~g~i~~L~~-lL-------------~~~~~~v~~~a~~~L~nl~~-------~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 217 (532)
.+.+..+.. ++ ...+.+.....+..+..+.. ..+..+..+ ..+++.++... ...+.
T Consensus 282 ~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d~ 358 (1049)
T 3m1i_C 282 QNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEER 358 (1049)
T ss_dssp HHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSCH
T ss_pred HHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCcH
Confidence 112222211 11 12234444445544443321 111112211 12344445444 34467
Q ss_pred HHHHHHHHHhhhccC----CCCCCC--cccccchHHHHHHhhcCC-------------------CH---HHHHHHHHHHH
Q 009568 218 SMLRNATWTLSNFCR----GKPQPP--FDQVRPALPALAQLVHSN-------------------DE---EVLTDACWALS 269 (532)
Q Consensus 218 ~~~~~a~~~L~~L~~----~~~~~~--~~~~~~~l~~L~~lL~~~-------------------d~---~v~~~a~~~L~ 269 (532)
++...++..+..++. .+.... ......+++.++..+..+ |. .....+..+|.
T Consensus 359 ~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~ 438 (1049)
T 3m1i_C 359 ELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLV 438 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHH
Confidence 778888877777776 321111 112234444544444221 11 11223444555
Q ss_pred HhccCChhHHHHHHHhCchHHHHHhhC--CCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcC-----CCc
Q 009568 270 YLSDGTNDKIQAVIEAGVCPRLVELLG--HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH-----SHK 342 (532)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-----~~~ 342 (532)
.++...... ++ .-+.+.+-..+. ..+|..+..+++++|.++.+.......-.-..+++.+..+... + .
T Consensus 439 ~l~~~~~~~---~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~-~ 513 (1049)
T 3m1i_C 439 YLTHLNVID---TE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN-K 513 (1049)
T ss_dssp HHHHHCHHH---HH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH-H
T ss_pred HHHccCHHH---HH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc-h
Confidence 554222211 11 122344444454 3577889999999999986544321111112345555554332 2 4
Q ss_pred hhHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHH--------HHHH
Q 009568 343 KSIKKEACWTISNITA---GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQI--------KYLV 411 (532)
Q Consensus 343 ~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~--------~~l~ 411 (532)
+.++..++|+++.++. ..+..... +++.++..+.++++.|+..|++++.+++........ .++
T Consensus 514 ~~v~~~~~~~lgry~~~~~~~~~~l~~-----vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~- 587 (1049)
T 3m1i_C 514 AVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI- 587 (1049)
T ss_dssp HHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH-
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH-
Confidence 5566679999998774 23332222 567788888888899999999999999985433221 221
Q ss_pred HcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568 412 REGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG 445 (532)
Q Consensus 412 ~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (532)
..++..+..++..-+.+-...+.+++..++...
T Consensus 588 -~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~ 620 (1049)
T 3m1i_C 588 -QTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1049)
T ss_dssp -HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence 124455555555555555666777877777654
No 89
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.18 E-value=5.2e-05 Score=81.50 Aligned_cols=298 Identities=15% Similarity=0.143 Sum_probs=199.6
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCC--CCCcccc
Q 009568 165 FVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP--QPPFDQV 242 (532)
Q Consensus 165 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~--~~~~~~~ 242 (532)
+++.+...+..-+..++..++++.......+ ....+++..+.+.+....+. +.++.++..||.... .+.....
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e~~~ 93 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVEPYI 93 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred HHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcccch
Confidence 4444443222333456666666654321111 11124566677777433333 889999999997652 2233344
Q ss_pred cchHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh-hHHHHHHHhCchHHHHHhhCCC-CccchhhHHHHHHHhhcCCcch
Q 009568 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLGHP-SPSVLIPALRTVGNIVTGDDFQ 320 (532)
Q Consensus 243 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~al~~L~nl~~~~~~~ 320 (532)
-+.+|.++....+....|+..|-.++..+...-+ ... ..++|.|+..|.+. .|..+..|+.+++.++...+.+
T Consensus 94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~ 168 (986)
T 2iw3_A 94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ 168 (986)
T ss_dssp HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH
Confidence 5677888888888888999888888777664332 222 35788888888654 6999999999999999765544
Q ss_pred hHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009568 321 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA--GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA 398 (532)
Q Consensus 321 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 398 (532)
...-+. .++|.+...+.+. .++|++.|..++..+|. +|.+ + ...+|.|+..+.+++. ..++...|+.-
T Consensus 169 ~~~~~~-~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d-~-----~~~~~~~~~~~~~p~~--~~~~~~~l~~~ 238 (986)
T 2iw3_A 169 VALRMP-ELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKD-I-----ERFIPSLIQCIADPTE--VPETVHLLGAT 238 (986)
T ss_dssp HHHHHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTT-T-----GGGHHHHHHHHHCTTH--HHHHHHHHTTC
T ss_pred HHHhcc-chhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcc-h-----hhhHHHHHHHhcChhh--hHHHHHHhhcC
Confidence 433333 6889999999988 99999999999999986 4444 1 2368999999987632 45566666555
Q ss_pred hcCC--CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHH
Q 009568 399 TSGG--THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIEN 476 (532)
Q Consensus 399 ~~~~--~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~ 476 (532)
+... +...... .+|.|..-|......+.+.+.-++.|+++.-+... ...+|... .++.++.
T Consensus 239 tfv~~v~~~~l~~-----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~-------~~~~f~~~-----l~p~~~~ 301 (986)
T 2iw3_A 239 TFVAEVTPATLSI-----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQ-------VIAPFLGK-----LLPGLKS 301 (986)
T ss_dssp CCCSCCCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHH-------HHHHHHTT-----THHHHHH
T ss_pred eeEeeecchhHHH-----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHH-------HHhhhhhh-----hhhHHHH
Confidence 4432 2222222 46777778888888899999999999998766543 23444443 4567776
Q ss_pred H-hcCCCHHHHHHHHHHHHHhCCC
Q 009568 477 L-QSHDNNEIYEKAVKILETYWLE 499 (532)
Q Consensus 477 L-~~~~~~~v~~~a~~il~~~~~~ 499 (532)
. ....+|++++.|...++.+...
T Consensus 302 ~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 302 NFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HhhccCCHHHHHHHHHHHHHHHHh
Confidence 4 5789999998888888777543
No 90
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.14 E-value=6.8e-05 Score=83.05 Aligned_cols=331 Identities=12% Similarity=0.068 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh--hhHHHH---Hh--CCC
Q 009568 89 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS--ENTKVV---ID--HGA 161 (532)
Q Consensus 89 ~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~i---~~--~g~ 161 (532)
.+...++.++...+... . .. .....+++.+.+++. + ++++..|+.++..+..... .....+ +. .+.
T Consensus 217 ~~~~~~l~~l~~wi~~~-~-~~--~~~~~ll~~l~~~l~--~-~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~ 289 (963)
T 2x19_B 217 CVRQKVLKCFSSWVQLE-V-PL--QDCEALIQAAFAALQ--D-SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGL 289 (963)
T ss_dssp HHHHHHHHHHHHHHTSS-C-CG--GGTHHHHHHHHHHTT--S-TTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCC-C-Cc--ccchHHHHHHHHHhC--C-chHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhh
Confidence 36666777776655421 1 11 122456787887774 3 6789999999999987431 111111 11 011
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH----h----cCChHHHHHHhhh----hhhhHHHHHHHHHhhh
Q 009568 162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVL----S----QGALIPLLAQLNE----RAKLSMLRNATWTLSN 229 (532)
Q Consensus 162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~----~----~~~l~~L~~ll~~----~~~~~~~~~a~~~L~~ 229 (532)
.+.+...+...+.......+.++..++...+ ..+. . ...+..++.+... ..+..+...++..+..
T Consensus 290 ~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~---~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~ 366 (963)
T 2x19_B 290 QEQLRQAVQNGDMETSHGICRIAVALGENHS---RALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYT 366 (963)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH---HHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhH---HHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHH
Confidence 2222222333455555555566665543211 1111 0 1223334443322 1244455555555555
Q ss_pred ccCCCCCC-------Cc----ccccchHHHHHHhhcCCCHH---------------HHHHHHHHHHHhccCChhHHHHHH
Q 009568 230 FCRGKPQP-------PF----DQVRPALPALAQLVHSNDEE---------------VLTDACWALSYLSDGTNDKIQAVI 283 (532)
Q Consensus 230 L~~~~~~~-------~~----~~~~~~l~~L~~lL~~~d~~---------------v~~~a~~~L~~l~~~~~~~~~~~~ 283 (532)
++...... .. .....+++.++..+..+++. .+..+..+|..++...... ++
T Consensus 367 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~---~l 443 (963)
T 2x19_B 367 LQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAE---LL 443 (963)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHH---HH
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHH---HH
Confidence 55421000 00 11123344444444322211 1233333443333211100 11
Q ss_pred HhCchHHHHHhh----CCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHh---cCCCchhHHHHHHHHHHHH
Q 009568 284 EAGVCPRLVELL----GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLL---THSHKKSIKKEACWTISNI 356 (532)
Q Consensus 284 ~~~~l~~L~~lL----~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL---~~~~~~~v~~~a~~~L~nl 356 (532)
.-+++.+...+ .+.++..+..++++++.++.+..... ...++.++..+ ..+ ++.++..++|+++.+
T Consensus 444 -~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~-~~~vr~~~~~~l~~~ 516 (963)
T 2x19_B 444 -SNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISIS-NVQLADTVMFTIGAL 516 (963)
T ss_dssp -HHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCC-SHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHH
Confidence 12233344444 55678889999999999998765321 12344444443 334 678999999999998
Q ss_pred hcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC--CCHHHHHHH
Q 009568 357 TAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC--PDPRIVTVC 434 (532)
Q Consensus 357 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~--~d~~v~~~a 434 (532)
+..-.... ..+ ..+++.++..|.+ +.|+..|++++.+++.........++ ..++..|..++.. -+.+.+..+
T Consensus 517 ~~~l~~~~-~~l-~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~ 590 (963)
T 2x19_B 517 SEWLADHP-VMI-NSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA--ANIVAVSQDVLMKQIHKTSQCMWL 590 (963)
T ss_dssp HHHHHHCH-HHH-TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH--HHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHhCH-HHH-HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhccCCCChHHHHHH
Confidence 75211111 222 3588888888854 89999999999999864332222221 1245555666654 356788889
Q ss_pred HHHHHHHHHhh
Q 009568 435 LEGLENILKVG 445 (532)
Q Consensus 435 l~~L~~l~~~~ 445 (532)
++++..++...
T Consensus 591 ~eai~~i~~~~ 601 (963)
T 2x19_B 591 MQALGFLLSAL 601 (963)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHhcC
Confidence 99999998644
No 91
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.13 E-value=4.9e-05 Score=84.26 Aligned_cols=290 Identities=10% Similarity=0.071 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHHhcCCh-hhHHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHH
Q 009568 133 QLQFEAAWALTNIASGTS-ENTKVVIDHGAVPIFVKLLAS-----PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIP 206 (532)
Q Consensus 133 ~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~ 206 (532)
..|..+..+|..++.... .....+ ++.+-..+.+ .+...++.++++++.++....... ...++.
T Consensus 436 ~~R~~~~~~l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~ 505 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE-----KRQIPR 505 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh-----hHHHHH
Confidence 355666667777665332 222222 2333333332 577899999999999976543211 123444
Q ss_pred HHHHhh--h--hhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHH
Q 009568 207 LLAQLN--E--RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAV 282 (532)
Q Consensus 207 L~~ll~--~--~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~ 282 (532)
++.++. . +.++.++..++|+++.++..-.. .......+++.++..+ + +.++..|++++.+++..........
T Consensus 506 l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~-~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~ 581 (971)
T 2x1g_F 506 LMRVLAEIPYEKLNVKLLGTALETMGSYCNWLME-NPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPY 581 (971)
T ss_dssp HHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhcccc
Confidence 444331 1 23788999999999999875321 1245677888888888 2 7899999999999997655444433
Q ss_pred HHhCchHHHHHhhCCC--CccchhhHHHHHHHhhcCCc-chhHHHhhcCchHHHH----HHhcCCC-chhHHHHHHHHHH
Q 009568 283 IEAGVCPRLVELLGHP--SPSVLIPALRTVGNIVTGDD-FQTQCIITYGALPYLL----GLLTHSH-KKSIKKEACWTIS 354 (532)
Q Consensus 283 ~~~~~l~~L~~lL~~~--~~~v~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~----~lL~~~~-~~~v~~~a~~~L~ 354 (532)
++ .++..+..++..+ +...+..++.+++.++...+ ......+. .+++.++ .++.... ++..+.....++.
T Consensus 582 ~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~ 659 (971)
T 2x1g_F 582 AD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLN 659 (971)
T ss_dssp HH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 33 5666777777663 45678888999999886432 22222222 2333333 3333321 2223444444444
Q ss_pred HHh---c--CC-----------HHHHHHHHHcCCHHHHHHHHhcC--chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCCh
Q 009568 355 NIT---A--GN-----------RDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAWAISNATSGGTHEQIKYLVREGCI 416 (532)
Q Consensus 355 nl~---~--~~-----------~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l 416 (532)
.++ . +. ++.+..+. ..+++.+..++... +..+.+.+++++..++..-..+...++- .++
T Consensus 660 ~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~--~~~ 736 (971)
T 2x1g_F 660 MISTLFSSLNTDVDEQATDQPIVQPVLLVM-QRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQ--DLC 736 (971)
T ss_dssp HHHHHHHHHTC-------------CCHHHH-HTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHH--HHH
T ss_pred HHHHHHhhcCCCcCcccccccCCCchHHHH-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHH--HHH
Confidence 443 2 11 11112222 34788888877643 6789999999999976521111112211 134
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568 417 KPLCDLFVCPDPRIVTVCLEGLENILKV 444 (532)
Q Consensus 417 ~~L~~lL~~~d~~v~~~al~~L~~l~~~ 444 (532)
+.|...+..... ..+++.+..++..
T Consensus 737 ~~l~~~~~~~~~---~~~l~l~~~~i~~ 761 (971)
T 2x1g_F 737 LFIVASFQTRCC---APTLEISKTAIVM 761 (971)
T ss_dssp HHHHHHCC--CC---HHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCc---hHHHHHHHHHHHH
Confidence 455555544222 2366777766653
No 92
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.13 E-value=0.00014 Score=80.52 Aligned_cols=339 Identities=13% Similarity=0.102 Sum_probs=188.4
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh---CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCC
Q 009568 127 MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL---ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA 203 (532)
Q Consensus 127 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL---~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~ 203 (532)
.+.+ ...+..++++++.++.+-.+.. ...++.++..+ .++++.++..++|+++.++..-.... .. -..+
T Consensus 459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~-l~~v 530 (963)
T 2x19_B 459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VM-INSV 530 (963)
T ss_dssp CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HH-HTTT
T ss_pred CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HH-HHHH
Confidence 3444 6889999999999998543311 12334444433 33578899999999999874311111 12 2356
Q ss_pred hHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCC--CHHHHHHHHHHHHHhccCCh-hHHH
Q 009568 204 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTN-DKIQ 280 (532)
Q Consensus 204 l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~l~~~~~-~~~~ 280 (532)
++.++..+ .+ +.++..|++++.++|......-......++..+..++... +...+..++.+++.++...+ +...
T Consensus 531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 77788777 33 7899999999999997542222223355666666666652 56788888999999876443 3333
Q ss_pred HHHHhCchHHHHHhh----CCC-Cccchh---hHHHHHHHhhcCCcc---------------------hhHHHhhcCchH
Q 009568 281 AVIEAGVCPRLVELL----GHP-SPSVLI---PALRTVGNIVTGDDF---------------------QTQCIITYGALP 331 (532)
Q Consensus 281 ~~~~~~~l~~L~~lL----~~~-~~~v~~---~al~~L~nl~~~~~~---------------------~~~~~~~~~~l~ 331 (532)
..++ .+++.+...+ ..+ ++..+. ..+.+|+.++..-.. ..-..+-..+++
T Consensus 608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (963)
T 2x19_B 608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ 686 (963)
T ss_dssp HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence 3333 3444444443 222 333332 445555555432110 001112224566
Q ss_pred HHHHHhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH----hcC-chhHHHHHHHHHHHhhc--CCC
Q 009568 332 YLLGLLTH-SHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLL----QNA-EFDIKKEAAWAISNATS--GGT 403 (532)
Q Consensus 332 ~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll----~~~-~~~v~~~a~~aL~nl~~--~~~ 403 (532)
.+..++.. ..++.+...+|.+++.++..-.+... .++|.++..+ ... .+ ..++.++.++. +..
T Consensus 687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~~ 757 (963)
T 2x19_B 687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAHE 757 (963)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCCC
Confidence 66666642 11568899999999987642111111 1234433332 221 22 34444444443 222
Q ss_pred H---HHHHHHHHcCChHHHHhhcC---CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchH-HHHHHHHhccHHHHHH
Q 009568 404 H---EQIKYLVREGCIKPLCDLFV---CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQ-YAQLVEEAEGLEKIEN 476 (532)
Q Consensus 404 ~---~~~~~l~~~~~l~~L~~lL~---~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~l~~ 476 (532)
. ..+..+.+ .++..+..++. ..+++++......+..++......--. ... +... ++.+..
T Consensus 758 ~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~------~~~~~~~i------~~~~~~ 824 (963)
T 2x19_B 758 PAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC------ERLDVKAV------FQCAVL 824 (963)
T ss_dssp TTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC------TTSCHHHH------HHHHHH
T ss_pred cchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC------CcccHHHH------HHHHHH
Confidence 1 12222111 12333333333 246899999999999999876543210 011 2222 233334
Q ss_pred HhcCCCHHHHHHHHHHHHHhCCC
Q 009568 477 LQSHDNNEIYEKAVKILETYWLE 499 (532)
Q Consensus 477 L~~~~~~~v~~~a~~il~~~~~~ 499 (532)
...+++..+...|.+++..++..
T Consensus 825 ~l~~~~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 825 ALKFPEAPTVKASCGFFTELLPR 847 (963)
T ss_dssp HTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HcCCCCHHHHHHHHHHHHHHHhc
Confidence 45689999999999999988754
No 93
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.07 E-value=0.0013 Score=73.26 Aligned_cols=355 Identities=9% Similarity=0.094 Sum_probs=188.4
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhc---CCCCC--c--h-----hHhhh--CCcHHHHHHhhcCCCCHHHHHHHHH
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLS---IERSP--P--I-----EEVIQ--SGVVPRFVEFLMREDYPQLQFEAAW 140 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~---~~~~~--~--~-----~~~i~--~g~i~~Lv~lL~~~~~~~~~~~a~~ 140 (532)
.++.+++.++ .++..+..++..|..+.. .-... . . ..+.. ..+++.+..++....++.++..++.
T Consensus 139 ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~ 217 (1049)
T 3m1i_C 139 FIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLE 217 (1049)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 5788888886 444444445555554432 10010 0 0 11111 1234445555654444789999999
Q ss_pred HHHHHhcCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCC--ch---hHHHHHhcCChHHHHHHhh--
Q 009568 141 ALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDS--PR---CRDLVLSQGALIPLLAQLN-- 212 (532)
Q Consensus 141 ~L~~l~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~--~~---~~~~~~~~~~l~~L~~ll~-- 212 (532)
++.+...-.+ ...+.+...++.+.. ++ .++.++..|+.+|..+.... +. ....+.. .++.++..+.
T Consensus 218 ~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~--l~~~~l~~l~~s 291 (1049)
T 3m1i_C 218 SLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL--FFQNTLQQIATS 291 (1049)
T ss_dssp HHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHH--HHHHHHHHHHHh
Confidence 9988765222 233555667777773 44 37899999999999998552 21 1111111 1112222110
Q ss_pred ---------------hhhhhHHHHHHHHHhhhccCCC------CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 009568 213 ---------------ERAKLSMLRNATWTLSNFCRGK------PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYL 271 (532)
Q Consensus 213 ---------------~~~~~~~~~~a~~~L~~L~~~~------~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l 271 (532)
.+.+.+.....+..+..+.... +.........+++.++.+...++.++...++.....+
T Consensus 292 i~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l 371 (1049)
T 3m1i_C 292 VMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNL 371 (1049)
T ss_dssp TCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred hCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 1224445555555554332210 1001112345667777777777888888887666666
Q ss_pred cc----C--ChhHHHHHHHhCchHHHHHhhCCCCc----------------------cchhhHHHHHHHhhcCCcchhHH
Q 009568 272 SD----G--TNDKIQAVIEAGVCPRLVELLGHPSP----------------------SVLIPALRTVGNIVTGDDFQTQC 323 (532)
Q Consensus 272 ~~----~--~~~~~~~~~~~~~l~~L~~lL~~~~~----------------------~v~~~al~~L~nl~~~~~~~~~~ 323 (532)
+. . .......++. .+++.++..+..++. ..+..+..+|..++......
T Consensus 372 ~~~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~--- 447 (1049)
T 3m1i_C 372 VADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVID--- 447 (1049)
T ss_dssp HHHHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHH---
T ss_pred HHHHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHH---
Confidence 54 1 1112222222 344555555533211 11223444555555322211
Q ss_pred HhhcCchHHHHHHhcC-CCchhHHHHHHHHHHHHhcCCHHHHH-HHHHcCCHHHHHHHHhc-----CchhHHHHHHHHHH
Q 009568 324 IITYGALPYLLGLLTH-SHKKSIKKEACWTISNITAGNRDQIQ-AVIDAGLVGPLVNLLQN-----AEFDIKKEAAWAIS 396 (532)
Q Consensus 324 ~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~-~l~~~~~i~~L~~ll~~-----~~~~v~~~a~~aL~ 396 (532)
++. -+++.+...+.. ..++..+..++|+++.++.+...... .++ ..+++.|..+... +.+.++..++|+++
T Consensus 448 ~l~-~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l-~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lg 525 (1049)
T 3m1i_C 448 TEE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLTVKKRGKDNKAVVASDIMYVVG 525 (1049)
T ss_dssp HHH-HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH-HHHHHHHHHHHhhhccccchHHHHHHHHHHHH
Confidence 111 223444555543 22678899999999999864332211 211 1144455543321 24455657999999
Q ss_pred HhhcC--CCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 009568 397 NATSG--GTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA 447 (532)
Q Consensus 397 nl~~~--~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 447 (532)
.++.. ..++... .+++.++..+.++++.|+..|..++.+++.....
T Consensus 526 ry~~~~~~~~~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~ 573 (1049)
T 3m1i_C 526 QYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1049)
T ss_dssp HCHHHHHHCHHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHhHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 77642 1222222 2677888888888999999999999999986543
No 94
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.04 E-value=0.0001 Score=68.23 Aligned_cols=188 Identities=11% Similarity=0.087 Sum_probs=141.7
Q ss_pred HHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-H
Q 009568 291 LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI-D 369 (532)
Q Consensus 291 L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~ 369 (532)
++..|.+.+...+..++.-|..+...+......++..+++..|+.+..+. +...+..+..++.++..+ ......++ .
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~-v~Gm~gvvs~ 200 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF-VDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS-HHHHHHHHHC
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc-cccccchhCC
Confidence 33444456667788899999996666667888999999999999999998 999999999999999875 44455555 4
Q ss_pred cCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHH--------HcC--ChHHHHhhcC---CCCHHHHHHHHH
Q 009568 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLV--------REG--CIKPLCDLFV---CPDPRIVTVCLE 436 (532)
Q Consensus 370 ~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~--------~~~--~l~~L~~lL~---~~d~~v~~~al~ 436 (532)
..+|..+..++.+.+..|.+.|+..|..++...+. ....+. ..| ..+.|+.+|. ..|.++...++.
T Consensus 201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~-~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSEN-NAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcc-cchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 45788888899888889999999999988876421 111111 112 3778899997 788999999999
Q ss_pred HHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCC--CHHHHHH
Q 009568 437 GLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHD--NNEIYEK 488 (532)
Q Consensus 437 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~--~~~v~~~ 488 (532)
.|..++...+... .-..+...+++.|.-..+...+... ++++...
T Consensus 280 LIN~lL~~apd~d-------~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 280 LINKTLAALPDQD-------SFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHCSSHH-------HHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHhcCCChh-------HHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 9999998766432 1334778889888888888876655 6666543
No 95
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.03 E-value=0.0003 Score=77.29 Aligned_cols=357 Identities=11% Similarity=0.095 Sum_probs=191.4
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcC----CCC--Cc-h-----hHhhh--CCcHHHHHHhhcCCCCHHHHHHHHH
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSI----ERS--PP-I-----EEVIQ--SGVVPRFVEFLMREDYPQLQFEAAW 140 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~----~~~--~~-~-----~~~i~--~g~i~~Lv~lL~~~~~~~~~~~a~~ 140 (532)
-++.+++.++++. .....++..|+.+... ... .. . +.+.. ..+++.+..+|....++++...++.
T Consensus 139 ~l~dL~~~l~~~~-~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~ 217 (1023)
T 4hat_C 139 FIPELIGSSSSSV-NVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLE 217 (1023)
T ss_dssp HHHHHHHHTTTCH-HHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 5677888876543 3344445555443221 101 11 0 11111 1244455555654444788888999
Q ss_pred HHHHHhcCChhhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCC---c--hhHHHHHh--cCChHHH-----
Q 009568 141 ALTNIASGTSENTKVVIDHGAVPIFV-KLLASPSDDVREQAVWALGNVAGDS---P--RCRDLVLS--QGALIPL----- 207 (532)
Q Consensus 141 ~L~~l~~~~~~~~~~i~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~---~--~~~~~~~~--~~~l~~L----- 207 (532)
++.....- -....+++.+.++.++ .+|. ++.++..|+.+|..+.+.. + .+...+.. .+.+..+
T Consensus 218 ~l~s~l~W--I~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~ 293 (1023)
T 4hat_C 218 SLLRYLHW--IPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVM 293 (1023)
T ss_dssp HHHHHTTT--SCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHh--CCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99998762 2245677788899999 8884 6789999999999998632 2 12211111 0111111
Q ss_pred ------HHHhh--hhhhhHHHHHHHHHhhhccCCCCC-----CC-cccccchHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 009568 208 ------LAQLN--ERAKLSMLRNATWTLSNFCRGKPQ-----PP-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSD 273 (532)
Q Consensus 208 ------~~ll~--~~~~~~~~~~a~~~L~~L~~~~~~-----~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~ 273 (532)
-..+. ...+.+.....+.++..+...... +. ......++..|+.+-..+|.++...++..=..++.
T Consensus 294 p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~ 373 (1023)
T 4hat_C 294 PVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVA 373 (1023)
T ss_dssp CTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Confidence 11111 223567777777777655543210 01 01111223355555556677776555543333332
Q ss_pred ----C--ChhHHHHHHHhCchHHHHHhhCCCC---------ccc------------hhhHH-HHHHHhhcCCcchhHHHh
Q 009568 274 ----G--TNDKIQAVIEAGVCPRLVELLGHPS---------PSV------------LIPAL-RTVGNIVTGDDFQTQCII 325 (532)
Q Consensus 274 ----~--~~~~~~~~~~~~~l~~L~~lL~~~~---------~~v------------~~~al-~~L~nl~~~~~~~~~~~~ 325 (532)
. .......++. .+++.++..+..+. ..+ ..... .+|..++.-.... ++
T Consensus 374 ~l~~e~~~~~~~~~~~~-~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~---~~ 449 (1023)
T 4hat_C 374 DLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVID---TE 449 (1023)
T ss_dssp HHTTSTTTGGGGHHHHH-HHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHH---HH
T ss_pred HHHhchHHHHHHHHHHH-HHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHH---HH
Confidence 1 0111111221 34555555555443 010 00011 2222222111100 11
Q ss_pred hcCchHHHHHHhcCC-CchhHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHHHhc-----CchhHHHHHHHHHHHh
Q 009568 326 TYGALPYLLGLLTHS-HKKSIKKEACWTISNITAGNR-DQIQAVIDAGLVGPLVNLLQN-----AEFDIKKEAAWAISNA 398 (532)
Q Consensus 326 ~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~~i~~L~~ll~~-----~~~~v~~~a~~aL~nl 398 (532)
. -+++.+...+.++ .+...+..++|+++.++.+-. +.-..++. .+++.|+.++.. ....++..++|+++.+
T Consensus 450 ~-~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~-~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry 527 (1023)
T 4hat_C 450 E-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQY 527 (1023)
T ss_dssp H-HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTC
T ss_pred H-HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHH-HHHHHHHHhhhccccCcchHHHHHHHHHHHHHH
Confidence 1 1234444444432 278999999999999997543 32333333 277888888864 2345667888999987
Q ss_pred hcCC--CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 009568 399 TSGG--THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA 447 (532)
Q Consensus 399 ~~~~--~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 447 (532)
+..- .++..+. ++..|...+..+++.+...|.+++.+|...+..
T Consensus 528 ~~wl~~~~~~L~~-----vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~ 573 (1023)
T 4hat_C 528 PRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1023)
T ss_dssp HHHHHHCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHhccHHHHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 6531 2333332 567788888788899999999999999987654
No 96
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.02 E-value=1.4e-05 Score=87.73 Aligned_cols=345 Identities=11% Similarity=0.033 Sum_probs=184.7
Q ss_pred cCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC--hhhHHHHHhCCC
Q 009568 84 WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT--SENTKVVIDHGA 161 (532)
Q Consensus 84 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~i~~~g~ 161 (532)
.+.++.++..++.++...++ ..+...++..++++.+.++|.. ++++..|+.||..+.... ++.+..++..=.
T Consensus 203 ~~~~~~l~~~~L~~l~s~i~---wi~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~ 276 (980)
T 3ibv_A 203 NAKNYGTVGLCLQVYAQWVS---WININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILN 276 (980)
T ss_dssp HTTCHHHHHHHHHHHHHHTT---TSCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHh---hcCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHh
Confidence 34678888899999999987 4567778888899999999875 789999999999998733 333333332201
Q ss_pred hHHHHHhhC--CCCHHHHHHHHHHHHHhhC------CCc-----hhHHH--HHhcCChHHHHHHhhhhhhhHHHHHHHHH
Q 009568 162 VPIFVKLLA--SPSDDVREQAVWALGNVAG------DSP-----RCRDL--VLSQGALIPLLAQLNERAKLSMLRNATWT 226 (532)
Q Consensus 162 i~~L~~lL~--~~~~~v~~~a~~~L~nl~~------~~~-----~~~~~--~~~~~~l~~L~~ll~~~~~~~~~~~a~~~ 226 (532)
+...+..+. ..+.++.+..+..+..++. ..+ ..+.. -.-.+.++.++.++ .+++.++...++.+
T Consensus 277 L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~F 355 (980)
T 3ibv_A 277 LNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPF 355 (980)
T ss_dssp HHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHH
Confidence 112222222 3566666555554443321 111 10100 11124677777777 44455666666655
Q ss_pred hhhccCCC---CC--CCccc----ccchHHHHHHhhcCC-----CH-----------HHHHHHHHHHHHhc-cCChhHHH
Q 009568 227 LSNFCRGK---PQ--PPFDQ----VRPALPALAQLVHSN-----DE-----------EVLTDACWALSYLS-DGTNDKIQ 280 (532)
Q Consensus 227 L~~L~~~~---~~--~~~~~----~~~~l~~L~~lL~~~-----d~-----------~v~~~a~~~L~~l~-~~~~~~~~ 280 (532)
+..+.... +. ..... ...+++.+++-+..+ +. +.|.... .+...+ .-.++..-
T Consensus 356 w~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l 434 (980)
T 3ibv_A 356 LSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFS 434 (980)
T ss_dssp HHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHH
Confidence 55544321 11 11112 233334444333321 11 2333333 322222 11121111
Q ss_pred HHHHhCchHHHHHhhC---CCCccchhhHHHHHHHhhcCCcchhHHH-hhc----CchHHHHHHhc-----CCCchhHHH
Q 009568 281 AVIEAGVCPRLVELLG---HPSPSVLIPALRTVGNIVTGDDFQTQCI-ITY----GALPYLLGLLT-----HSHKKSIKK 347 (532)
Q Consensus 281 ~~~~~~~l~~L~~lL~---~~~~~v~~~al~~L~nl~~~~~~~~~~~-~~~----~~l~~L~~lL~-----~~~~~~v~~ 347 (532)
..+-.-+.+.+...+. +.+|..++.++.+|+.++.+........ -.. .+++.+..++. .+ .+.|+.
T Consensus 435 ~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~ 513 (980)
T 3ibv_A 435 SYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQL 513 (980)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHH
Confidence 1000011222223342 2468889999999999998755322111 001 24455556654 45 789999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc------CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHh
Q 009568 348 EACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN------AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCD 421 (532)
Q Consensus 348 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ 421 (532)
.++|+++..+.--.. +...++.++..+-+ ++.+|+..|+.++.+++.........++- .++..+..
T Consensus 514 ~~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~--~il~~l~~ 585 (980)
T 3ibv_A 514 LYMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTE--SSLAMLGD 585 (980)
T ss_dssp HHHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHH--HHHHHTTG
T ss_pred HHHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHH--HHHHHHHH
Confidence 999999998862111 12345555555443 56789999999999998755332212211 13444444
Q ss_pred hcCC-----CC----------------HHHHHHHHHHHHHHHHhh
Q 009568 422 LFVC-----PD----------------PRIVTVCLEGLENILKVG 445 (532)
Q Consensus 422 lL~~-----~d----------------~~v~~~al~~L~~l~~~~ 445 (532)
+|.. .+ .+-+....+++..++...
T Consensus 586 lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~ 630 (980)
T 3ibv_A 586 LLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSG 630 (980)
T ss_dssp GGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHS
T ss_pred hhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCC
Confidence 4442 11 123556778888888654
No 97
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.00 E-value=0.00012 Score=67.88 Aligned_cols=185 Identities=13% Similarity=0.109 Sum_probs=136.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHh-
Q 009568 247 PALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCII- 325 (532)
Q Consensus 247 ~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~- 325 (532)
..++.-|.+.+...+..++.-|..+...+.+....++..+++..|+......+..++..++++++++....+ ....++
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~-Gm~gvvs 199 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVD-GMLGVVA 199 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHH-HHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccc-cccchhC
Confidence 345666677888889999999998665667788899999999999999999999999999999999997544 332333
Q ss_pred hcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--------c--CCHHHHHHHHh---cCchhHHHHHH
Q 009568 326 TYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID--------A--GLVGPLVNLLQ---NAEFDIKKEAA 392 (532)
Q Consensus 326 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~--~~i~~L~~ll~---~~~~~v~~~a~ 392 (532)
....+..+..++.+. ...|.+.|...|-.++..++.....+.+ . ..++.|+.+|+ ..+.+++..|.
T Consensus 200 ~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 200 HSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 556888999999976 8999999999999998754322222211 1 24788999997 66899999998
Q ss_pred HHHHHhhcCCC-HH----HHHHHHHcCChHHHHhhcCCC--CHHHHHH
Q 009568 393 WAISNATSGGT-HE----QIKYLVREGCIKPLCDLFVCP--DPRIVTV 433 (532)
Q Consensus 393 ~aL~nl~~~~~-~~----~~~~l~~~~~l~~L~~lL~~~--d~~v~~~ 433 (532)
..|..+..+.+ .+ ....+-+.|+-..+...++.. |++++..
T Consensus 279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 88877766544 23 233344556555666667654 6665543
No 98
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.69 E-value=0.0067 Score=66.61 Aligned_cols=296 Identities=13% Similarity=0.124 Sum_probs=160.3
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHH-HHhhcCCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHh--CC
Q 009568 85 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF-VEFLMREDYPQLQFEAAWALTNIASGT-SENTKVVID--HG 160 (532)
Q Consensus 85 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~L-v~lL~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~--~g 160 (532)
+.++.+...++.+++.+++ --++..+++.++++.+ ..+|. + +.++..|+.||+.+.... ++....+.. .+
T Consensus 218 ~~~~~lv~~~L~~L~~~~s---WI~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~ 291 (1073)
T 3gjx_A 218 SQNAPLVHATLETLLRFLN---WIPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL 291 (1073)
T ss_dssp CCCHHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHH---hcCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 4567777788899998886 4577888899999988 46664 3 789999999999998743 222222211 11
Q ss_pred ChHHHHHhh-------------CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc-C-------ChHHHHHHhhhhhhhHH
Q 009568 161 AVPIFVKLL-------------ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ-G-------ALIPLLAQLNERAKLSM 219 (532)
Q Consensus 161 ~i~~L~~lL-------------~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~-~-------~l~~L~~ll~~~~~~~~ 219 (532)
++..+..++ ...+.+.....+.++..+... ....+... + ++..++.+- ..++.++
T Consensus 292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~---~~~lIe~~p~~~~~l~~~l~~ll~~s-~~~d~ei 367 (1073)
T 3gjx_A 292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKE---HGQLLEKRLNLREALMEALHYMLLVS-EVEETEI 367 (1073)
T ss_dssp HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHH---HHHHHHHCGGGHHHHHHHHHHHHHHT-TCSCHHH
T ss_pred HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHH---HHHHHhcCccchHHHHHHHHHHHHHh-CCCcHHH
Confidence 122121222 112234445555555554321 11122111 1 122233332 4457788
Q ss_pred HHHHHHHhhhccCCC----CC----C-------------CcccccchHHHHHH----hhcCCC-----------------
Q 009568 220 LRNATWTLSNFCRGK----PQ----P-------------PFDQVRPALPALAQ----LVHSND----------------- 257 (532)
Q Consensus 220 ~~~a~~~L~~L~~~~----~~----~-------------~~~~~~~~l~~L~~----lL~~~d----------------- 257 (532)
...+...+..|...- +. . ......+++..|.. -+..++
T Consensus 368 ~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~ 447 (1073)
T 3gjx_A 368 FKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFM 447 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHH
Confidence 887777666554321 10 0 00112233333333 222111
Q ss_pred ---H-----HHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC--CCccchhhHHHHHHHhhcCCcchhH-HHhh
Q 009568 258 ---E-----EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQ-CIIT 326 (532)
Q Consensus 258 ---~-----~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~-~~~~ 326 (532)
. .+..+++..+.++. ..+... -+++.+...+.. .+|.....+++++|.++..-..... .++-
T Consensus 448 ~d~~~~~ly~~mrd~L~~lt~l~--~~~~~~-----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp 520 (1073)
T 3gjx_A 448 KDTDSINLYKNMRETLVYLTHLD--YVDTEI-----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV 520 (1073)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHC--HHHHHH-----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHHhcCC--HHHHHH-----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH
Confidence 1 12222332222221 111111 123444444443 4578899999999999854332222 2222
Q ss_pred cCchHHHHHHhcCCC----chhHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009568 327 YGALPYLLGLLTHSH----KKSIKKEACWTISNITA---GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT 399 (532)
Q Consensus 327 ~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 399 (532)
.+++.|+.+..+.. ...++...+|++|..+. .+++.... ++..|+..+...++.|+..|+.|+..++
T Consensus 521 -~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af~~i~ 594 (1073)
T 3gjx_A 521 -TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTFIKIA 594 (1073)
T ss_dssp -HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHHHHHH
T ss_pred -HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 45666666665431 23456667899998765 34444333 4567888888889999999999999998
Q ss_pred cCCC
Q 009568 400 SGGT 403 (532)
Q Consensus 400 ~~~~ 403 (532)
..+.
T Consensus 595 ~~C~ 598 (1073)
T 3gjx_A 595 QKCR 598 (1073)
T ss_dssp HHTG
T ss_pred HHHH
Confidence 7543
No 99
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.66 E-value=0.0041 Score=68.28 Aligned_cols=359 Identities=12% Similarity=0.116 Sum_probs=183.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHHhhCCC-chhHH
Q 009568 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF-VKLLASPSDDVREQAVWALGNVAGDS-PRCRD 196 (532)
Q Consensus 119 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L-~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~ 196 (532)
++.+..+|....++++...++.+|..+.+=- ....+++.+.++.| ..+| .++.++..|+.+|..+.+.. +.+.+
T Consensus 208 l~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI--~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~ 283 (1073)
T 3gjx_A 208 FQLCQFVMENSQNAPLVHATLETLLRFLNWI--PLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEE 283 (1073)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS--CTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHH
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHHhc--CHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHH
Confidence 3344444544444888888899999988722 24567788888888 4666 46789999999999998642 32222
Q ss_pred HHHh--cCChHHHHHHh------------hhhhhhHHHHHHHHHhhhccCCCC-----CCC-cccccchHHHHHHhhcCC
Q 009568 197 LVLS--QGALIPLLAQL------------NERAKLSMLRNATWTLSNFCRGKP-----QPP-FDQVRPALPALAQLVHSN 256 (532)
Q Consensus 197 ~~~~--~~~l~~L~~ll------------~~~~~~~~~~~a~~~L~~L~~~~~-----~~~-~~~~~~~l~~L~~lL~~~ 256 (532)
.+.. ..++..+-.++ ....+.+.....+.++..+..... .+. ......++..++.+-..+
T Consensus 284 ~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~ 363 (1073)
T 3gjx_A 284 QFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVE 363 (1073)
T ss_dssp HHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCC
Confidence 2211 01111111111 012345666667777766554320 011 111223344455555677
Q ss_pred CHHHHHHHHHHHHHh----ccCC------------------hhHHHHHHH---hCchHHHHHhhCCCCc----------c
Q 009568 257 DEEVLTDACWALSYL----SDGT------------------NDKIQAVIE---AGVCPRLVELLGHPSP----------S 301 (532)
Q Consensus 257 d~~v~~~a~~~L~~l----~~~~------------------~~~~~~~~~---~~~l~~L~~lL~~~~~----------~ 301 (532)
|.++...++..=..+ .... +.. ..+.. ..+...++..+..++. .
T Consensus 364 d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~-~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~ 442 (1073)
T 3gjx_A 364 ETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPR-RQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEV 442 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHH-HHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCE
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhH-HHHHHHHHHHHHHHHHHhcCCCccccccCcccchH
Confidence 777765544332222 2110 011 11111 1223333344443321 0
Q ss_pred chh-----------hHH-HHHHHhhcCCcchhHHHhhcCchHHHHHHhcCC-CchhHHHHHHHHHHHHhcC-CHHHHHHH
Q 009568 302 VLI-----------PAL-RTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS-HKKSIKKEACWTISNITAG-NRDQIQAV 367 (532)
Q Consensus 302 v~~-----------~al-~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~-~~~~~~~l 367 (532)
++. .++ .++..++.-....+.. -+++.+.+.+..+ .++.....+||+++.++.. .++.-..+
T Consensus 443 ~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~ 518 (1073)
T 3gjx_A 443 VREFMKDTDSINLYKNMRETLVYLTHLDYVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRF 518 (1073)
T ss_dssp EEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHH
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccch
Confidence 111 011 1222332211111111 1234444444432 2578899999999999853 22211122
Q ss_pred HHcCCHHHHHHHHhcC---c--hhHHHHHHHHHHHhhcC--CCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHH
Q 009568 368 IDAGLVGPLVNLLQNA---E--FDIKKEAAWAISNATSG--GTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLEN 440 (532)
Q Consensus 368 ~~~~~i~~L~~ll~~~---~--~~v~~~a~~aL~nl~~~--~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~ 440 (532)
+- .+++.|+.+.... + ..++...+|+++..... ..++..+. ++..|+..+...++.++..|..++..
T Consensus 519 Lp-~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af~~ 592 (1073)
T 3gjx_A 519 LV-TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTFIK 592 (1073)
T ss_dssp HH-HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHHHH
T ss_pred HH-HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 21 2677777777654 2 33566677888876543 12333333 67788888888899999999999999
Q ss_pred HHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 009568 441 ILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE 494 (532)
Q Consensus 441 l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~ 494 (532)
+...+...-.....| ...+|...+. ...-.....|+.+.-..+|+....++.
T Consensus 593 i~~~C~~~lv~~~~~-e~~p~i~~il-~~~~~~~~~l~~~~~~~lyeav~~vi~ 644 (1073)
T 3gjx_A 593 IAQKCRRHFVQVQVG-EVMPFIDEIL-NNINTIICDLQPQQVHTFYEAVGYMIG 644 (1073)
T ss_dssp HHHHTGGGGTSCCTT-CSSCHHHHHH-TSHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcccc-ccchHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 998876542111111 3455666554 222233333333344444444444443
No 100
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.54 E-value=0.0013 Score=59.57 Aligned_cols=181 Identities=14% Similarity=0.075 Sum_probs=122.1
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCC----cchhHH
Q 009568 248 ALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD----DFQTQC 323 (532)
Q Consensus 248 ~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~----~~~~~~ 323 (532)
.+...+.+.|..-...++..|.......++.....++ .+++.+.-.+.+.+..+...++.+|..+...- ......
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 4555666677777777777776655433332222222 13444444455778888888888888775311 111111
Q ss_pred HhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009568 324 IITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG 402 (532)
Q Consensus 324 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 402 (532)
- -.-++|.|+.-+-++ ...+|..+-.++..++. ..+. .+++.++.-+.+.+.++|.+++..+..+....
T Consensus 129 e-a~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 129 E-VSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNA 198 (266)
T ss_dssp H-HHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 1 124679999999888 88899888877766654 2232 15667788888999999999999999887522
Q ss_pred CHHHHHHHHHcCCh---HHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568 403 THEQIKYLVREGCI---KPLCDLFVCPDPRIVTVCLEGLENILKVG 445 (532)
Q Consensus 403 ~~~~~~~l~~~~~l---~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (532)
... ....+ +.+..++.+.|..|+..|+.++..+....
T Consensus 199 G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 199 GIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp CSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 211 13468 99999999999999999999999887653
No 101
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00095 Score=62.01 Aligned_cols=192 Identities=13% Similarity=0.111 Sum_probs=124.3
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCch-hHhh--hCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPI-EEVI--QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS 150 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~-~~~i--~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~ 150 (532)
..|| +-+.|.|.++..|..|+..+.+++........ +... -....+.+...+.+.+ ..++..++.++..++....
T Consensus 10 sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~ 87 (278)
T 4ffb_C 10 TTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFA 87 (278)
T ss_dssp -CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC
T ss_pred hcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhh
Confidence 3455 66789999999999999999999875321111 1111 1235666777887777 8999999999998875211
Q ss_pred -----hhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHH
Q 009568 151 -----ENTKVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNAT 224 (532)
Q Consensus 151 -----~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~ 224 (532)
.......-..+++.|+. .+.+....++..+..++..++...... .. ++..++..+ .+.++.++..++
T Consensus 88 ~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l 160 (278)
T 4ffb_C 88 SSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAA 160 (278)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHH
T ss_pred hhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHH
Confidence 11111112245677776 477788999999988887776432211 11 134444555 667888888888
Q ss_pred HHhhhccCCCC--CC-CcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 009568 225 WTLSNFCRGKP--QP-PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG 274 (532)
Q Consensus 225 ~~L~~L~~~~~--~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~ 274 (532)
..|..+..... .. .......+++.+..++.+.|+.|+..|..++..+...
T Consensus 161 ~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 161 NCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 77777665421 11 1222345666788899999999999999998876543
No 102
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.45 E-value=0.001 Score=65.40 Aligned_cols=259 Identities=13% Similarity=0.074 Sum_probs=144.6
Q ss_pred hhhhccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 009568 70 QTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT 149 (532)
Q Consensus 70 ~~~~~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~ 149 (532)
++..+-...|+..|-++.+++|.-|+-.||.++....... |.. ...+ . ..|+++++-++-+
T Consensus 170 eWPfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GA-------GR~-------~~~N-~---DLAvRLLCVLALD- 230 (800)
T 3oc3_A 170 ENVLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGG-------DIQ-------IRVD-S---KLFSKIYEILVTD- 230 (800)
T ss_dssp CSGGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------CC-------CCCC-T---THHHHHHHHHHHB-
T ss_pred CCHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCC-------cee-------cccc-H---HHHHHHHHHHHhc-
Confidence 3455566888899999999999999999999987531111 111 1111 1 3344444444431
Q ss_pred hhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhh
Q 009568 150 SENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS 228 (532)
Q Consensus 150 ~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~ 228 (532)
.+-.+.++ --..||+.|+.+|+.+ ..-+.- ..++..++..+ ....-+++..++-.|.
T Consensus 231 --------------RFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLK 288 (800)
T 3oc3_A 231 --------------KFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALG 288 (800)
T ss_dssp --------------CCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHH
T ss_pred --------------cccccccCeeeeehHHHHHHHHHHH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHH
Confidence 11112222 1245777777777776 443321 22233333322 3334566666666666
Q ss_pred hccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCC-C-ccchhhH
Q 009568 229 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP-S-PSVLIPA 306 (532)
Q Consensus 229 ~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~-~~v~~~a 306 (532)
++ .+- .. ...++++.++..|.+.|++|+..|+.+|.-++ .++... .++..+...|.+- + ..-....
T Consensus 289 YL-~DL--L~--~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSV 356 (800)
T 3oc3_A 289 YL-KEF--VE--DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSN 356 (800)
T ss_dssp HT-GGG--CC--CHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHH
T ss_pred HH-HHH--HH--HHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHH
Confidence 66 110 00 14667777777778888888888888887777 222223 2333444444332 1 2233445
Q ss_pred HHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchh
Q 009568 307 LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFD 386 (532)
Q Consensus 307 l~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 386 (532)
+..|+.|+..+... ..+...+|.|...|.|+ -..||..+..+|..+. .....+.+ ...+|-..+.+
T Consensus 357 MdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-ITSVR~AVL~TL~tfL--~~~~LRLI--------FQNILLE~nee 422 (800)
T 3oc3_A 357 LSLLTKIYRENPEL---SIPPERLKDIFPCFTSP-VPEVRTSILNMVKNLS--EESIDFLV--------AEVVLIEEKDE 422 (800)
T ss_dssp HHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SHHHHHHHHHHTTTCC--CHHHHHHH--------HHHHHHCSCHH
T ss_pred HHHHHHHHcCCccc---ccChHHHHHHHhhhcCC-cHHHHHHHHHHHHHHH--hhhHHHHH--------HHHHHhCCcHH
Confidence 66677766654321 12237788888888888 8888888888887776 22222111 22334445667
Q ss_pred HHHHHHHHH
Q 009568 387 IKKEAAWAI 395 (532)
Q Consensus 387 v~~~a~~aL 395 (532)
++..+..+.
T Consensus 423 Il~lS~~VW 431 (800)
T 3oc3_A 423 IREMAIKLL 431 (800)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666555
No 103
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.0058 Score=56.60 Aligned_cols=191 Identities=12% Similarity=0.127 Sum_probs=127.1
Q ss_pred hHHHHHhhCCCCccchhhHHHHHHHhhcCCcchh--HHHh--hcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCC---
Q 009568 288 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT--QCII--TYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN--- 360 (532)
Q Consensus 288 l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~--~~~~--~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~--- 360 (532)
+| |-.-|.+.+|..|..|+..+..+....+... .... -....+.+...+.++ +..+...++.++..++...
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC--
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhh
Confidence 44 6678899999999999999998876544221 1111 113456677888888 9999999999999887521
Q ss_pred ---HHHHHHHHHcCCHHHHHHH-HhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHH
Q 009568 361 ---RDQIQAVIDAGLVGPLVNL-LQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE 436 (532)
Q Consensus 361 ---~~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~ 436 (532)
.......+ ..++|.|+.- +.+....++..|..++..++....+. . .+++.+...+++.++.++..++.
T Consensus 90 ~~~~~~~~~~~-~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~--~-----~~~e~l~~~l~~Knpkv~~~~l~ 161 (278)
T 4ffb_C 90 SLKNAHNITLI-STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI--T-----QSVELVIPFFEKKLPKLIAAAAN 161 (278)
T ss_dssp -CCHHHHHHHH-HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS--H-----HHHHHHGGGGGCSCHHHHHHHHH
T ss_pred hcccchhHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH--H-----HHHHHHHHHHhccCHHHHHHHHH
Confidence 11122222 2356777653 66677889988888888776543211 1 13567778889999999999999
Q ss_pred HHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009568 437 GLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLE 499 (532)
Q Consensus 437 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 499 (532)
.|..++........ ...+.... .+..+-.+..|.|++|+..|..++-.+|..
T Consensus 162 ~l~~~l~~fg~~~~------~~k~~l~~-----i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 162 CVYELMAAFGLTNV------NVQTFLPE-----LLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHHHTTTTC------CHHHHHHH-----HGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCcC------CchhHHHH-----HHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 99998875322110 11112221 235567788999999999999988776653
No 104
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.35 E-value=0.0017 Score=71.17 Aligned_cols=307 Identities=10% Similarity=-0.016 Sum_probs=164.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc--hhHHHHHhcCChHH
Q 009568 129 EDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP--RCRDLVLSQGALIP 206 (532)
Q Consensus 129 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~--~~~~~~~~~~~l~~ 206 (532)
.+ +.++..++.+|.....- -....+++.+.++.+..+|. ++.++..|+.+|..+..... ..+..++..=.+..
T Consensus 205 ~~-~~l~~~~L~~l~s~i~w--i~~~~i~~~~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~ 279 (980)
T 3ibv_A 205 KN-YGTVGLCLQVYAQWVSW--ININLIVNEPCMNLLYSFLQ--IEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL 279 (980)
T ss_dssp TC-HHHHHHHHHHHHHHTTT--SCHHHHHCHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHhh--cCHHhhhcchHHHHHHHHcC--ChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence 55 88999999999998872 22345666678888888886 48999999999999985543 22222222100111
Q ss_pred HHHHhhh-hhhhHHHHHHHHHhhhcc------CCCCC-CC-------cccccchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 009568 207 LLAQLNE-RAKLSMLRNATWTLSNFC------RGKPQ-PP-------FDQVRPALPALAQLVHSNDEEVLTDACWALSYL 271 (532)
Q Consensus 207 L~~ll~~-~~~~~~~~~a~~~L~~L~------~~~~~-~~-------~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l 271 (532)
.+..+.. ..|.++.+..+..+..++ ...+. .. .....++++.++.++.+++.++...++..+..+
T Consensus 280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~ 359 (980)
T 3ibv_A 280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDL 359 (980)
T ss_dssp HHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 1111211 345555544443332221 11111 01 123457888889999888888877666665544
Q ss_pred ccC-----C----hhHHHHHHHhCchHHHHHhhCCCCc----------------cchhhHHHHHHHhhcCCcchhHHHhh
Q 009568 272 SDG-----T----NDKIQAVIEAGVCPRLVELLGHPSP----------------SVLIPALRTVGNIVTGDDFQTQCIIT 326 (532)
Q Consensus 272 ~~~-----~----~~~~~~~~~~~~l~~L~~lL~~~~~----------------~v~~~al~~L~nl~~~~~~~~~~~~~ 326 (532)
... . ......++. .+++.++..+..++. ..|....-.+..++.-.+......+-
T Consensus 360 l~~~~~~~~~~~~~~~~~~~l~-~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~ 438 (980)
T 3ibv_A 360 LVSLRKESSSKELSASLKEFLK-SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMY 438 (980)
T ss_dssp HHHHHHHTTSCCCCHHHHHHHH-HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHhccccccccHHHHHHHH-HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 321 0 111111221 344444444543211 12222221121222111111110000
Q ss_pred cCchHHHHHHhc---CCCchhHHHHHHHHHHHHhcCCHHHHHHHH-Hc----CCHHHHHHHHh-----cCchhHHHHHHH
Q 009568 327 YGALPYLLGLLT---HSHKKSIKKEACWTISNITAGNRDQIQAVI-DA----GLVGPLVNLLQ-----NAEFDIKKEAAW 393 (532)
Q Consensus 327 ~~~l~~L~~lL~---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~----~~i~~L~~ll~-----~~~~~v~~~a~~ 393 (532)
.-+.+.+...+. +. +...++.+..+|+.++.+......... .. .+++.+..++. ..++.|+..+++
T Consensus 439 ~~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~ 517 (980)
T 3ibv_A 439 SAITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYME 517 (980)
T ss_dssp HHHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 012222333332 23 577888999999999875332111000 00 13455555555 567899999999
Q ss_pred HHHHhhcCC--CHHHHHHHHHcCChHHHHh--hcCCCCHHHHHHHHHHHHHHHHhhhh
Q 009568 394 AISNATSGG--THEQIKYLVREGCIKPLCD--LFVCPDPRIVTVCLEGLENILKVGEA 447 (532)
Q Consensus 394 aL~nl~~~~--~~~~~~~l~~~~~l~~L~~--lL~~~d~~v~~~al~~L~~l~~~~~~ 447 (532)
+++..+..- .++.... ++..++. .+.++++.++..|..++.++++....
T Consensus 518 ~l~rys~~~~~~~~~l~~-----~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 518 ILVRYASFFDYESAAIPA-----LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp HHHHTGGGGGTCCTTHHH-----HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCchhHHH-----HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence 999987642 2222222 4555666 56677889999999999999987765
No 105
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.31 E-value=0.0099 Score=54.99 Aligned_cols=201 Identities=14% Similarity=0.109 Sum_probs=143.8
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch----hHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhc
Q 009568 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR----CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 230 (532)
Q Consensus 155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~----~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L 230 (532)
.+...+.+..|+..|..-+.+.|..+..++.++...... ..+.+.. -...+..++....++++.-.+-..|...
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence 345567888899999888899999999999998765433 2233332 2344444444445666666666666666
Q ss_pred cCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHh---CchHHHHHhhCCCCccchhhHH
Q 009568 231 CRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLGHPSPSVLIPAL 307 (532)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~v~~~al 307 (532)
+++..........+.+-.+...++.++=++..+|..++..+...........+.. .++.....+|.+++..++..++
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 6654322223334455566778888899999999999998887766665666554 3677788899999999999999
Q ss_pred HHHHHhhcCCcc---hhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568 308 RTVGNIVTGDDF---QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (532)
Q Consensus 308 ~~L~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 358 (532)
..||.|...... -++++-+..-+..++.+|++. +..++-+|..++--+.+
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeee
Confidence 999999875331 233444456789999999999 99999999999888776
No 106
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=97.22 E-value=0.031 Score=51.46 Aligned_cols=294 Identities=15% Similarity=0.165 Sum_probs=174.9
Q ss_pred HHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc-CCCHHHHH
Q 009568 184 LGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-SNDEEVLT 262 (532)
Q Consensus 184 L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~ 262 (532)
|.|+..+....-+-+...+++..+...+ +.++.++.+..+..|...+..+ ..........+|.++..+. ++++++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCcceEE
Confidence 3344455555667778888899888888 7778889999999998887664 2223345678999888886 67899999
Q ss_pred HHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCC-------Ccc-------chhhHHHHHHHhhc-------------
Q 009568 263 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP-------SPS-------VLIPALRTVGNIVT------------- 315 (532)
Q Consensus 263 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~-------v~~~al~~L~nl~~------------- 315 (532)
.....|+|.........+..+..+.++.|...+... +.. +...+++++.|+..
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~ 423 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA 423 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence 999999999988777777788889999988876431 222 33445555555531
Q ss_pred CCc--chhHHHhhcCchHHHHHHhcCCC-c----hhHHHHHHHHHHHHhcCC---HHH----HHHHHHcCCHHHHHHHHh
Q 009568 316 GDD--FQTQCIITYGALPYLLGLLTHSH-K----KSIKKEACWTISNITAGN---RDQ----IQAVIDAGLVGPLVNLLQ 381 (532)
Q Consensus 316 ~~~--~~~~~~~~~~~l~~L~~lL~~~~-~----~~v~~~a~~~L~nl~~~~---~~~----~~~l~~~~~i~~L~~ll~ 381 (532)
|.. .+...+++..++..|+..|+-.. + -++|.......--+.... .+. ++..-+.+++-.++-.+.
T Consensus 424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~VtDd~rk~NLvGHIciA~s 503 (619)
T 3c2g_A 424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNVIDENRKENLIGHICAAYS 503 (619)
T ss_dssp CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGCCCTTTCCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccccchhhhhhhHHHHHHHHH
Confidence 111 12334566678888888886431 1 245555554444333310 000 011112233333333332
Q ss_pred c-----Cchh-------HHHHHHHHHHHhhc-CCCHHHHHHHHHcCChHHHHhhcCCC--CHHHHHHHHHHHHHHHHhhh
Q 009568 382 N-----AEFD-------IKKEAAWAISNATS-GGTHEQIKYLVREGCIKPLCDLFVCP--DPRIVTVCLEGLENILKVGE 446 (532)
Q Consensus 382 ~-----~~~~-------v~~~a~~aL~nl~~-~~~~~~~~~l~~~~~l~~L~~lL~~~--d~~v~~~al~~L~~l~~~~~ 446 (532)
. .+.+ +.+.+...|..+.. .|...+... ..-.++.=+.+|+.. .|..+..++..-..+++.++
T Consensus 504 Wa~~Q~tNertqdTkqQLiER~fSLL~~LmEQc~~E~qVAh--~~YsIsCPLnlLn~nQ~KP~FI~NVL~VcDKILeHcP 581 (619)
T 3c2g_A 504 WVFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKEVAQ--YSYSIDCPLNLLNGNQVKPTFIHNVLVVCDKILEHCP 581 (619)
T ss_dssp HHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH--TTTTSCCGGGGGSSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred HhhcCccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHh--heeeccCchhhhcccccChHHHHHHHHHHHHHHHhCc
Confidence 1 1221 22333333434433 223322221 011233344566654 46777777877778887665
Q ss_pred hhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009568 447 AEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETY 496 (532)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~ 496 (532)
.... .. .-.-..++.+.+|+|+++...|..++.+|
T Consensus 582 ~~Ad-------------~W--~i~r~tle~l~NHsNsDIa~aasSLL~rf 616 (619)
T 3c2g_A 582 TRAD-------------IW--TIDRPMLEGLTNHRNSDIAKAANSLLSRF 616 (619)
T ss_dssp THHH-------------HS--CCCHHHHHHHHTCSSHHHHHHHHHHHTTS
T ss_pred chhc-------------cc--eechHHHHHHhcCCCchHHHHHHHHHHhC
Confidence 4321 00 11124678889999999999999998876
No 107
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.19 E-value=0.021 Score=50.48 Aligned_cols=184 Identities=11% Similarity=0.145 Sum_probs=123.1
Q ss_pred CHHHHHHHHHHHHHhccCChhHHHHHHHh-CchHHHHH-------hhCCCCc-----cchhhHHHHHHHhhcCCcchhHH
Q 009568 257 DEEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVE-------LLGHPSP-----SVLIPALRTVGNIVTGDDFQTQC 323 (532)
Q Consensus 257 d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~-------lL~~~~~-----~v~~~al~~L~nl~~~~~~~~~~ 323 (532)
+++.++.|+..|+.--+..++....+..+ |.+..|++ .+..+.- .-...|+..+..++++ ++.+..
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAsh-petr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH-PETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHC-TTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcC-cchhhH
Confidence 44557777776666444444443333332 44444432 2222221 1224466666777764 446678
Q ss_pred HhhcCchHHHHHHhcCCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009568 324 IITYGALPYLLGLLTHSH----KKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA 398 (532)
Q Consensus 324 ~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 398 (532)
++++++.-.|..+|+... -+.+|-.+.++++.+.. ++++.+..+++.+++|..++.|+.++.-.+.-|...+..+
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 899999888999886541 24788899999999886 7889999999999999999999999999999999999998
Q ss_pred hcCCCHHHHHHHHH--------cCChHHHHh-hcCCCCHHHHHHHHHHHHHHHH
Q 009568 399 TSGGTHEQIKYLVR--------EGCIKPLCD-LFVCPDPRIVTVCLEGLENILK 443 (532)
Q Consensus 399 ~~~~~~~~~~~l~~--------~~~l~~L~~-lL~~~d~~v~~~al~~L~~l~~ 443 (532)
.. +.....+++. ..++..++. +.+.+.+.+.+.++.+-..+..
T Consensus 173 L~--dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsd 224 (268)
T 2fv2_A 173 LL--DDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSD 224 (268)
T ss_dssp HH--SHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred hc--cchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 87 3344444332 112333333 3456778888888877766654
No 108
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.17 E-value=0.0052 Score=55.64 Aligned_cols=178 Identities=15% Similarity=0.076 Sum_probs=116.2
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhh---hhhhhHHHHHHHHHhhhcc----CCCC
Q 009568 163 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN---ERAKLSMLRNATWTLSNFC----RGKP 235 (532)
Q Consensus 163 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~~~~~~a~~~L~~L~----~~~~ 235 (532)
+.+...|-+.+..-+..++..|.......+. .+.. .+..+++.+. .+.+..+...++.+|..+. ....
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445555555666666666666655433221 2111 2333333321 2456667666666666553 2222
Q ss_pred CCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhc
Q 009568 236 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 315 (532)
Q Consensus 236 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~ 315 (532)
.-.......++|.|+.-+.++.+.++..+-.++..+..-.+ -..+++.++.-+.+.++..+..++..++.+..
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 22222246788999999988899998888877766653211 12467788888999999999999999999976
Q ss_pred CCcchhHHHhhcCch---HHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568 316 GDDFQTQCIITYGAL---PYLLGLLTHSHKKSIKKEACWTISNITA 358 (532)
Q Consensus 316 ~~~~~~~~~~~~~~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 358 (532)
..... ....+ +.+..++.+. +..||..|..++..+-.
T Consensus 197 ~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 197 NAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred hcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 43322 23467 9999999998 99999999999987765
No 109
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=97.17 E-value=0.07 Score=49.14 Aligned_cols=364 Identities=14% Similarity=0.188 Sum_probs=200.3
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcC----CC-------CHHHHHHHHHHHHHH
Q 009568 77 PAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR----ED-------YPQLQFEAAWALTNI 145 (532)
Q Consensus 77 ~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~----~~-------~~~~~~~a~~~L~~l 145 (532)
..+....+.+||..++.-+..+|.....++-..++..--.|.+..++.++.+ .. ++.+-..-+.+|..+
T Consensus 9 QAir~WFnTpDPqrrfhMA~tiReWvrrDKlaqvDqAnlPnCiq~lLnII~DGlKPQpvQlP~sYYaQLw~~LLDIL~Rl 88 (619)
T 3c2g_A 9 QAIRLWFNTPDPMQRLHMAKTIRTWIRQDKFAQVDQANMPNCVQQILNIIYDGLKPQPVQLPISYYAQLWYNLLDILRRF 88 (619)
T ss_dssp HHHHHGGGCCCHHHHHHHHHHHHHHHHHHTTTTSCGGGHHHHHHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhcccCcccCchHHHHHHHHHhcCCCcccccCChhHHHHHHHHHHHHHHHH
Confidence 3456777889999999999999998876433334433334556666655532 11 123333344455555
Q ss_pred hcC--ChhhHHHHHh------CC---ChHHHHHhhC-----CCC-HHHHHHHHHHHHHhhC--CCchhHHHHHhcCChHH
Q 009568 146 ASG--TSENTKVVID------HG---AVPIFVKLLA-----SPS-DDVREQAVWALGNVAG--DSPRCRDLVLSQGALIP 206 (532)
Q Consensus 146 ~~~--~~~~~~~i~~------~g---~i~~L~~lL~-----~~~-~~v~~~a~~~L~nl~~--~~~~~~~~~~~~~~l~~ 206 (532)
... ...+...++. +| +=..++.+++ +++ .....++..++.|+.. ..+..|..+...--...
T Consensus 89 T~~~it~PyIHqvVQlF~PreNgp~dFRdLICN~iq~~~~~d~hm~~CAkQvF~Ife~ii~~~KneKLR~dFAr~~Kfek 168 (619)
T 3c2g_A 89 TFLPIISPYIHQVVQMFCPRENGPQDFRELICNLISLNWQKDPHMKHCANQVFQIFNCIIMGVKNEKLRTEFAQHLKFEK 168 (619)
T ss_dssp HHCGGGGGGHHHHHHTTSCSSSSTTSHHHHHHHHTCGGGGGSTTTHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCSHH
T ss_pred hhccccchHHHHHHHHhccCCCCchhHHHHHHHhcCccccCChHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHhHHHH
Confidence 441 1122222222 11 1122222222 111 2344556666666653 23344444444333333
Q ss_pred HHHHhhhhh---------hhHHHHHHHHH-----------hhhccCCC-CCCCc---ccccchHHHHHHhhcCCC-----
Q 009568 207 LLAQLNERA---------KLSMLRNATWT-----------LSNFCRGK-PQPPF---DQVRPALPALAQLVHSND----- 257 (532)
Q Consensus 207 L~~ll~~~~---------~~~~~~~a~~~-----------L~~L~~~~-~~~~~---~~~~~~l~~L~~lL~~~d----- 257 (532)
++..|...- ++.+....-.. +++=-... +.++. ...++++-.-.+++.-.|
T Consensus 169 l~gtL~~yl~pq~~p~~iNPtil~~lRFiISKDt~lKd~~IWn~~~q~d~~PP~s~li~Lkgv~~~s~~~~~~~dpet~~ 248 (619)
T 3c2g_A 169 LVGTLSEYFNPQVHPGMINPAIFIIFRFIISKDTRLKDYFIWNNNPHDQPPPPTGLIIKLNAVMIGSYRLIAGQNPETLP 248 (619)
T ss_dssp HHHHHHGGGCTTSCGGGCCTHHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCCTTSHHHHHHHHHHHHHHHHTTCCGGGGG
T ss_pred HHHHHHHhcCCCCCccccCchhhhhhHhhhcccceeccceeeCCccccCCCCChhHHHHHHHHHHhhHHhhcCCChhccc
Confidence 333332111 23222211111 11111111 11111 112333333334444333
Q ss_pred --HH------HHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCc
Q 009568 258 --EE------VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGA 329 (532)
Q Consensus 258 --~~------v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~ 329 (532)
++ |...+...| ++.-...+.++.+++.+.+..+...+..++.++....+..|-..+.... ....-+ ...
T Consensus 249 qNpel~~LiQVvtR~FDLL-~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaks-L~~t~L-~e~ 325 (619)
T 3c2g_A 249 QNPELAHLIQVIIRTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKA-LAKTPL-ENI 325 (619)
T ss_dssp GCHHHHHHHHHHHHHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGG-GGTSCC-TTH
T ss_pred CCHHHHHHHHHHHHHHHHH-HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHH-Hhhccc-ccc
Confidence 22 333444334 4444556677889999999999999999999999999999888775332 111111 267
Q ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-------chhHHHHHHHHHHHhh---
Q 009568 330 LPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA-------EFDIKKEAAWAISNAT--- 399 (532)
Q Consensus 330 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-------~~~v~~~a~~aL~nl~--- 399 (532)
+|.++..+.-..+.++.......|+|+.++.....+..+..|.++.|...+... +..-++.||..++|..
T Consensus 326 LPFi~~~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRal 405 (619)
T 3c2g_A 326 LPFLLRLIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTL 405 (619)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHhccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHH
Confidence 889888886443889999999999999998887777778899999999887542 3334555665555543
Q ss_pred ----c------CC--------CHHHHHHHHHcCChHHHHhhcCCCC------HHHHHHHHHHHHHHHH
Q 009568 400 ----S------GG--------THEQIKYLVREGCIKPLCDLFVCPD------PRIVTVCLEGLENILK 443 (532)
Q Consensus 400 ----~------~~--------~~~~~~~l~~~~~l~~L~~lL~~~d------~~v~~~al~~L~~l~~ 443 (532)
. +| +..+.-.+++.++++.|+.+|+.+. -+++..++..+.-+++
T Consensus 406 NNFLMmWIPm~NGqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlR 473 (619)
T 3c2g_A 406 NNFLMMWIPTPNGETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLR 473 (619)
T ss_dssp HHHHGGGSCCTTSCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHT
T ss_pred hhheeEEEecCCCccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhc
Confidence 1 11 2334455566678889999887532 2456666665555543
No 110
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.03 E-value=0.00031 Score=63.25 Aligned_cols=185 Identities=16% Similarity=0.086 Sum_probs=127.1
Q ss_pred hhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCC
Q 009568 81 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG 160 (532)
Q Consensus 81 ~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g 160 (532)
..+.++++.++..++..+ + ...|..++++++ +.++..++..| .
T Consensus 57 ~ll~d~~~~VR~~AA~~l---------~----------~~~l~~L~~D~~-~~VR~~aA~~L---~-------------- 99 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS---------P----------VEALTPLIRDSD-EVVRRAVAYRL---P-------------- 99 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS---------C----------GGGGGGGTTCSS-HHHHHHHHTTS---C--------------
T ss_pred HHhcCCCHHHHHHHHHhC---------C----------HHHHHHHccCcC-HHHHHHHHHHC---C--------------
Confidence 345788888988888743 0 223677778887 89999988642 1
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcc
Q 009568 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240 (532)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 240 (532)
.+.|..++.+++..||..++..+ . ...+..++ ++++..++..++..+ .
T Consensus 100 -~~~L~~ll~D~d~~VR~~aA~~l---~---------------~~~L~~L~-~D~d~~VR~~aA~~l---~--------- 147 (244)
T 1lrv_A 100 -REQLSALMFDEDREVRITVADRL---P---------------LEQLEQMA-ADRDYLVRAYVVQRI---P--------- 147 (244)
T ss_dssp -SGGGGGTTTCSCHHHHHHHHHHS---C---------------TGGGGGGT-TCSSHHHHHHHHHHS---C---------
T ss_pred -HHHHHHHHcCCCHHHHHHHHHhC---C---------------HHHHHHHH-cCCCHHHHHHHHHhc---C---------
Confidence 24577788889999998888742 1 11233334 778888998888732 1
Q ss_pred cccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcch
Q 009568 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 320 (532)
Q Consensus 241 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~ 320 (532)
.+.+..+++++++.|+..++..+ . .+.+..++.++++.|+..+...+
T Consensus 148 -----~~~l~~l~~D~d~~VR~~aa~~l---~---------------~~ll~~ll~D~d~~VR~aaa~~l---------- 194 (244)
T 1lrv_A 148 -----PGRLFRFMRDEDRQVRKLVAKRL---P---------------EESLGLMTQDPEPEVRRIVASRL---------- 194 (244)
T ss_dssp -----GGGGGGTTTCSCHHHHHHHHHHS---C---------------GGGGGGSTTCSSHHHHHHHHHHC----------
T ss_pred -----HHHHHHHHcCCCHHHHHHHHHcC---C---------------HHHHHHHHcCCCHHHHHHHHHhC----------
Confidence 02344667788999998887641 1 13445677889999998887652
Q ss_pred hHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHH
Q 009568 321 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAI 395 (532)
Q Consensus 321 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 395 (532)
..+.|..++.++ ++.||..++..++ .+.|..+ .+.++.||..|...|
T Consensus 195 --------~~~~L~~Ll~D~-d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 --------RGDDLLELLHDP-DWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp --------CGGGGGGGGGCS-SHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred --------CHHHHHHHHcCC-CHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 125677778888 9999999988753 2445555 777899998887654
No 111
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.96 E-value=0.071 Score=51.78 Aligned_cols=247 Identities=14% Similarity=0.061 Sum_probs=147.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHH
Q 009568 172 PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQ 251 (532)
Q Consensus 172 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ 251 (532)
.+...+..|+..+.....+-|..++. ++..++.++ .+.+..++..++..|..+|.+ ..+..+..+|++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q 107 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ 107 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence 57899999999999999888887666 478899999 788999999999999999987 346788899999
Q ss_pred hhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCC-cchhHHHhhcCch
Q 009568 252 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD-DFQTQCIITYGAL 330 (532)
Q Consensus 252 lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~-~~~~~~~~~~~~l 330 (532)
+|+++++.-...+-++|..+...++. +.+..+...+..+++.+|..++..|..-...- ......-.+.-+.
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~ 179 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELIL 179 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHH
Confidence 99999888777777777776654442 23333444443456788888888775543221 1111112222345
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHH------hcCchhHHHHHHHHHHHhh----
Q 009568 331 PYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLL------QNAEFDIKKEAAWAISNAT---- 399 (532)
Q Consensus 331 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll------~~~~~~v~~~a~~aL~nl~---- 399 (532)
..+.++|.+- ...--.-...+|..+-. .++...+.++ +.+.... ...|++.......++....
T Consensus 180 ~~ikK~L~DV-T~~EF~L~m~lL~~lkl~~t~~g~qeLv-----~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS 253 (507)
T 3u0r_A 180 TESKKVLEDV-TGEEFVLFMKILSGLKSLQTVSGRQQLV-----ELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFS 253 (507)
T ss_dssp HHHHHHTTSC-CHHHHHHHHHHHHTSGGGSSHHHHHHHH-----HHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCB
T ss_pred HHHHHHhccc-cHHHHHHHHHHHHhcccccCchHHHHHH-----HHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhc
Confidence 5566666544 33222333344444333 3444444443 2233322 1134454444444444332
Q ss_pred cC-CCHHHHHHHHHcCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhh
Q 009568 400 SG-GTHEQIKYLVREGCIKPLCDLFVCP-DPRIVTVCLEGLENILKVG 445 (532)
Q Consensus 400 ~~-~~~~~~~~l~~~~~l~~L~~lL~~~-d~~v~~~al~~L~~l~~~~ 445 (532)
.+ .+.....++++. +++.+-.+-... .++.+...|.++..+..+.
T Consensus 254 ~~v~StkFv~y~~~k-IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~ 300 (507)
T 3u0r_A 254 KNVHSTRFVTYFCEQ-VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFC 300 (507)
T ss_dssp TTBCCHHHHHHHHHH-TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTC
T ss_pred cCCChHHHHHHHHHh-hccchhhccccccchHHHHHHHHHHHHHccCC
Confidence 21 245677776664 777665444321 1224445566666655544
No 112
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.92 E-value=0.076 Score=49.15 Aligned_cols=204 Identities=14% Similarity=0.096 Sum_probs=145.6
Q ss_pred HHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcc----hhHHHhhc-CchHHHHHHhcCCCchhHHHHHHHHHH
Q 009568 280 QAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF----QTQCIITY-GALPYLLGLLTHSHKKSIKKEACWTIS 354 (532)
Q Consensus 280 ~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~----~~~~~~~~-~~l~~L~~lL~~~~~~~v~~~a~~~L~ 354 (532)
+.+...+++..|+..|..-+.+.+..+..+++++...... ..+++... .++..|+.-.. ++++--.+...|.
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe---~~diAl~~G~mLR 148 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLR 148 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc---cchhHhHHHHHHH
Confidence 4566779999999999988888999999999999875542 23334331 22333333332 3455555555555
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc--CChHHHHhhcCCCCHHHHH
Q 009568 355 NITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE--GCIKPLCDLFVCPDPRIVT 432 (532)
Q Consensus 355 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--~~l~~L~~lL~~~d~~v~~ 432 (532)
-++. .+.....++..+.+-.+.+.++.++.++...|..++..+......-...+|..+ .....+..+|.+++.-++.
T Consensus 149 ecir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR 227 (341)
T 1upk_A 149 ECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR 227 (341)
T ss_dssp HHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence 5554 466677788888888999999999999999999999988876433333333321 3477788899999999999
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009568 433 VCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW 497 (532)
Q Consensus 433 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~ 497 (532)
.++..|..++-...+.. -....+.+..-+..+..|..+++..|+-.|..+..-|.
T Consensus 228 QSlKLLgelLldr~N~~----------vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFV 282 (341)
T 1upk_A 228 QSLKLLGELLLDRHNFT----------IMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFV 282 (341)
T ss_dssp HHHHHHHHHHHSGGGHH----------HHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchHHH----------HHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeee
Confidence 99999999997654322 23445556666788888899999999999988765443
No 113
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.85 E-value=0.00037 Score=62.76 Aligned_cols=185 Identities=16% Similarity=0.129 Sum_probs=128.3
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCC
Q 009568 124 EFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA 203 (532)
Q Consensus 124 ~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~ 203 (532)
.++.+++ +.++..++..+ ....|..++.++++.||..++..|.
T Consensus 57 ~ll~d~~-~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L~------------------ 99 (244)
T 1lrv_A 57 QYLADPF-WERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRLP------------------ 99 (244)
T ss_dssp GGTTCSS-HHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTSC------------------
T ss_pred HHhcCCC-HHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHCC------------------
Confidence 4456766 89999888743 1234677888899999999886421
Q ss_pred hHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHH
Q 009568 204 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVI 283 (532)
Q Consensus 204 l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~ 283 (532)
...|..++ .+++..++..+...+ . .+.+..++.++++.|+..+... +.
T Consensus 100 ~~~L~~ll-~D~d~~VR~~aA~~l---~--------------~~~L~~L~~D~d~~VR~~aA~~---l~----------- 147 (244)
T 1lrv_A 100 REQLSALM-FDEDREVRITVADRL---P--------------LEQLEQMAADRDYLVRAYVVQR---IP----------- 147 (244)
T ss_dssp SGGGGGTT-TCSCHHHHHHHHHHS---C--------------TGGGGGGTTCSSHHHHHHHHHH---SC-----------
T ss_pred HHHHHHHH-cCCCHHHHHHHHHhC---C--------------HHHHHHHHcCCCHHHHHHHHHh---cC-----------
Confidence 12344455 778888998888753 1 0235566788899999888763 11
Q ss_pred HhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHH
Q 009568 284 EAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 363 (532)
Q Consensus 284 ~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~ 363 (532)
.+.+..++.++++.|+..++..+ . -+.+..++.++ ++.||..++..+
T Consensus 148 ----~~~l~~l~~D~d~~VR~~aa~~l---~---------------~~ll~~ll~D~-d~~VR~aaa~~l---------- 194 (244)
T 1lrv_A 148 ----PGRLFRFMRDEDRQVRKLVAKRL---P---------------EESLGLMTQDP-EPEVRRIVASRL---------- 194 (244)
T ss_dssp ----GGGGGGTTTCSCHHHHHHHHHHS---C---------------GGGGGGSTTCS-SHHHHHHHHHHC----------
T ss_pred ----HHHHHHHHcCCCHHHHHHHHHcC---C---------------HHHHHHHHcCC-CHHHHHHHHHhC----------
Confidence 12345677888999998887741 1 13455677787 999999988652
Q ss_pred HHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHH
Q 009568 364 IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL 438 (532)
Q Consensus 364 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L 438 (532)
..+.|..++.+.++.||..++..+. .+.|..+ +++++.|+..+...|
T Consensus 195 --------~~~~L~~Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 --------RGDDLLELLHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp --------CGGGGGGGGGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred --------CHHHHHHHHcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 1256777889999999999998753 2345445 889999998876543
No 114
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.78 E-value=0.0039 Score=61.39 Aligned_cols=246 Identities=14% Similarity=0.104 Sum_probs=156.4
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch--hHHHHHhcCChHHHHHHhh--h-------hhhhHHHHHHHHHhhh
Q 009568 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPR--CRDLVLSQGALIPLLAQLN--E-------RAKLSMLRNATWTLSN 229 (532)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~--~~~~~~~~~~l~~L~~ll~--~-------~~~~~~~~~a~~~L~~ 229 (532)
+...|+.-|-++..++|.-|+.+|..+...... .+.........-.++-++. + .--..+++.|+.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 446666667778999999999999988632110 0000001122222333221 1 1124689999999999
Q ss_pred ccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHH
Q 009568 230 FCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309 (532)
Q Consensus 230 L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~ 309 (532)
+ ..-+.. ..++..++..+..+.++++..++-.|.|+.+--.. + .++++.++..|.+.+++|+..|+.+
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~-----L-d~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED-----K-DGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC-----H-HHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH-----H-HHHHHHHHhhcCCcccHHHHHHHHH
Confidence 8 543333 35555666666788999999999999999321111 2 3678888899999999999999999
Q ss_pred HHHhhcCCcchhHHHhhcCchHHHHHHhcCCCc-hhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHH
Q 009568 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHK-KSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIK 388 (532)
Q Consensus 310 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 388 (532)
|..++ .+.... .++..+...|.+-.+ ..-.......|+.++...+. .......+|.|..++.+.-..||
T Consensus 323 LiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSVR 392 (800)
T 3oc3_A 323 LCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEVR 392 (800)
T ss_dssp HTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHHH
T ss_pred hhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHHH
Confidence 99998 222222 344556666654312 12233445566666653221 11123679999999999999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHH
Q 009568 389 KEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLE 439 (532)
Q Consensus 389 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~ 439 (532)
..++.+|..+. ....... .+..+|-.++++++..++++..
T Consensus 393 ~AVL~TL~tfL---~~~~LRL--------IFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 393 TSILNMVKNLS---EESIDFL--------VAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHTTTCC---CHHHHHH--------HHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hhhHHHH--------HHHHHHhCCcHHHHHHHHHHHH
Confidence 99999998887 2222222 2234555788888888877664
No 115
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.44 E-value=0.16 Score=44.63 Aligned_cols=145 Identities=17% Similarity=0.064 Sum_probs=106.2
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhC-CCchhH
Q 009568 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAG-DSPRCR 195 (532)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~-~~~~~~ 195 (532)
.++.+..+.+++. .++|..|+..|+.. .... ..++.+.. +-..++..|++.+..+++.++. ..+..
T Consensus 72 ~~~la~~L~~~~~-deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~- 139 (240)
T 3l9t_A 72 IKKLAFLAYQSDV-YQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK- 139 (240)
T ss_dssp HHHHHHHHHTCSS-HHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-
T ss_pred HHHHHHHHHhCcc-hHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-
Confidence 4566667777776 89999999998887 3111 23566666 5556889999999999999874 33321
Q ss_pred HHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 009568 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT 275 (532)
Q Consensus 196 ~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~ 275 (532)
.++.+...+ .+++..+++.++..+.--+.. + ........++|.|..+..+++.-|+..+.|.|..++...
T Consensus 140 -------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 140 -------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp -------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred -------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence 455666666 888999999999887654443 2 122333567888888888889999999999999999988
Q ss_pred hhHHHHHHH
Q 009568 276 NDKIQAVIE 284 (532)
Q Consensus 276 ~~~~~~~~~ 284 (532)
++.+..+++
T Consensus 210 Pd~V~~~~~ 218 (240)
T 3l9t_A 210 PDLVKIELK 218 (240)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877666555
No 116
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=96.26 E-value=0.042 Score=49.10 Aligned_cols=141 Identities=12% Similarity=0.097 Sum_probs=100.2
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC-----HHHHHHHH----
Q 009568 342 KKSIKKEACWTISNITAGNRDQIQAVID-AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGT-----HEQIKYLV---- 411 (532)
Q Consensus 342 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~-----~~~~~~l~---- 411 (532)
+.....++..||..+.. +......++. .+.+..|...+.++.+.++..|+..|..++.... ......+-
T Consensus 67 ~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~ 145 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 145 (233)
T ss_dssp HHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 34567788888888875 4555666664 5678888888988899999999988887776432 11222221
Q ss_pred --HcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 009568 412 --REGCIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEK 488 (532)
Q Consensus 412 --~~~~l~~L~~lL~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~ 488 (532)
+..-...+++.++ ..+.+....++..+..++...+.... -......+...|..+.++.|...+++++...
T Consensus 146 ~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~-------R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 146 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-------RVHIRSELMRLGLHQVLQELREIENEDMKVQ 218 (233)
T ss_dssp HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH-------HHHHHHHHHHTTHHHHHHHHHHCCCHHHHHH
T ss_pred hCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHH-------HHHHHHHHHHCChHHHHHHHhccCCHHHHHH
Confidence 2234667888887 45678888888888888877654331 1235677889999999999999999987655
Q ss_pred HH
Q 009568 489 AV 490 (532)
Q Consensus 489 a~ 490 (532)
..
T Consensus 219 i~ 220 (233)
T 2f31_A 219 LC 220 (233)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 117
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.80 E-value=0.67 Score=41.01 Aligned_cols=193 Identities=12% Similarity=0.097 Sum_probs=122.7
Q ss_pred CccchhhHHHHHHHhhcCCcchhHHHhhc-CchHHHHH-------HhcCCC-chhHHHHHHHHHH---HHhcCCHHHHHH
Q 009568 299 SPSVLIPALRTVGNIVTGDDFQTQCIITY-GALPYLLG-------LLTHSH-KKSIKKEACWTIS---NITAGNRDQIQA 366 (532)
Q Consensus 299 ~~~v~~~al~~L~nl~~~~~~~~~~~~~~-~~l~~L~~-------lL~~~~-~~~v~~~a~~~L~---nl~~~~~~~~~~ 366 (532)
+++.|..|+.-|+.=-...++..-.++.+ |.+..|++ .+..+. ....-...|.+|+ .++ .+++....
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvA-shpetr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVA-SHPETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHH-HCTTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHH-cCcchhhH
Confidence 34457777777766544444444444443 44444432 122110 1222334444433 344 45777888
Q ss_pred HHHcCCHHHHHHHHhcCc-----hhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 009568 367 VIDAGLVGPLVNLLQNAE-----FDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENI 441 (532)
Q Consensus 367 l~~~~~i~~L~~ll~~~~-----~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l 441 (532)
++++++.-.|..+|...+ ..+|-.++.+++.++...+++...++.+.++++.....++.+.+-...+|...+.+|
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 899988777888887642 468999999999999988999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009568 442 LKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW 497 (532)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~ 497 (532)
+....-..-... +.+.|.....-.| ..+..+..++++.+-+-...+.-+..
T Consensus 173 L~dd~GL~YiC~---t~eRF~av~~vL~--~mV~~l~~~ps~RLLKhiircYlRLs 223 (268)
T 2fv2_A 173 LLDDTGLAYICQ---TYERFSHVAMILG--KMVLQLSKEPSARLLKHVVRCYLRLS 223 (268)
T ss_dssp HHSHHHHHHHTS---SHHHHHHHHHHHH--HHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred hccchhHHHHHc---cHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 876554332111 1222222221111 23445667888887765555444443
No 118
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.76 E-value=0.086 Score=50.85 Aligned_cols=161 Identities=13% Similarity=0.094 Sum_probs=111.8
Q ss_pred chhHHHhhcCchHHHHHHhcC----------CCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHhcCchhH
Q 009568 319 FQTQCIITYGALPYLLGLLTH----------SHKKSIKKEACWTISNITAGNRDQIQAVID-AGLVGPLVNLLQNAEFDI 387 (532)
Q Consensus 319 ~~~~~~~~~~~l~~L~~lL~~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v 387 (532)
...+.+. .+++..|+.+|.. ..+......++.||..+... ...+..++. ...+..|...+.+..+.+
T Consensus 101 sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~ 178 (383)
T 3eg5_B 101 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNM 178 (383)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHH
T ss_pred HHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchHH
Confidence 3444444 4556666666631 11346778888999888754 556666664 567899999999999999
Q ss_pred HHHHHHHHHHhhcCCC-----HHHHHHH------HHcCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhhhhhhccCCC
Q 009568 388 KKEAAWAISNATSGGT-----HEQIKYL------VREGCIKPLCDLFVC-PDPRIVTVCLEGLENILKVGEAEKNMGTAT 455 (532)
Q Consensus 388 ~~~a~~aL~nl~~~~~-----~~~~~~l------~~~~~l~~L~~lL~~-~d~~v~~~al~~L~~l~~~~~~~~~~~~~~ 455 (532)
+..|+..|..+|.... ......+ -+..-...++..|+. .+.+....++..+..++...+....
T Consensus 179 ~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~----- 253 (383)
T 3eg5_B 179 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF----- 253 (383)
T ss_dssp HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH-----
T ss_pred HHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHH-----
Confidence 9999999988886543 1112221 122447788888886 5778888888888888877654431
Q ss_pred ccchHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 009568 456 ADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEK 488 (532)
Q Consensus 456 ~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~ 488 (532)
-......+..+|..+.++.|...+++++...
T Consensus 254 --R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Q 284 (383)
T 3eg5_B 254 --RVHIRSELMRLGLHQVLQELREIENEDMKVQ 284 (383)
T ss_dssp --HHHHHHHHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred --HHHHHHHHHHCChHHHHHHHhcCCChhHHHH
Confidence 2235677889999999999998888887654
No 119
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.57 E-value=0.14 Score=44.91 Aligned_cols=142 Identities=13% Similarity=0.077 Sum_probs=101.4
Q ss_pred cchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHH-hhCCCCccchhhHHHHHHHhhc-CCcch
Q 009568 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLGHPSPSVLIPALRTVGNIVT-GDDFQ 320 (532)
Q Consensus 243 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~v~~~al~~L~nl~~-~~~~~ 320 (532)
...++....+..++..+++..|+..|+.+ ... ..+++.+.. +..++++.|+..+..+++.++. ..++
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe- 138 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK- 138 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-
Confidence 34556666677778889999999999887 211 135666666 5567889999999999999885 3332
Q ss_pred hHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-----CHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHH
Q 009568 321 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-----NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAI 395 (532)
Q Consensus 321 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-----~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 395 (532)
..++.+.....++ +..||+.|...+.-.+.. +++. +++.|-.+..+++.-||+...|+|
T Consensus 139 -------~~l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~~~~k~dp~~--------ll~iL~~L~~D~s~yVrKSVan~L 202 (240)
T 3l9t_A 139 -------KALPIIDEWLKSS-NLHTRRAATEGLRIWTNRPYFKENPNE--------AIRRIADLKEDVSEYVRKSVGNAL 202 (240)
T ss_dssp -------TTHHHHHHHHHCS-SHHHHHHHHHHTCSGGGSTTTTTCHHH--------HHHHHHTTTTCSCHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhcCC-CHHHHHHHHHhhHHHhccchhhcCHHH--------HHHHHHHhcCChHHHHHHHHHHHH
Confidence 2567888999998 999999998776443321 2221 355666666777899999999999
Q ss_pred HHhhcCCCHHHHHHHHH
Q 009568 396 SNATSGGTHEQIKYLVR 412 (532)
Q Consensus 396 ~nl~~~~~~~~~~~l~~ 412 (532)
..++.. +|+.+..+++
T Consensus 203 rD~SK~-~Pd~V~~~~~ 218 (240)
T 3l9t_A 203 RDISKK-FPDLVKIELK 218 (240)
T ss_dssp HHHHTT-CHHHHHHHHH
T ss_pred HHHhhh-CHHHHHHHHH
Confidence 999876 5665554443
No 120
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.44 E-value=0.64 Score=52.35 Aligned_cols=293 Identities=11% Similarity=0.067 Sum_probs=164.8
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCC-----Cchh
Q 009568 122 FVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL--ASPSDDVREQAVWALGNVAGD-----SPRC 194 (532)
Q Consensus 122 Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~-----~~~~ 194 (532)
+...+....+...|.+|-..|..+-. ++ .+...+...| .+.+..+|..|+..|.+.... ++..
T Consensus 17 l~~~~~p~~~~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~ 86 (1204)
T 3a6p_A 17 VTVMMDPNSTQRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLE 86 (1204)
T ss_dssp HHHHHCTTCCHHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHH
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 33444432236788888888877654 22 2334444433 346789999999999987632 2222
Q ss_pred HHHHHhcCChHHHHHHhhhh------hhhHHHHHHHHHhhhccCCC-CCCCcccccchHHHHHHhhcCCCHHHHHHHHHH
Q 009568 195 RDLVLSQGALIPLLAQLNER------AKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWA 267 (532)
Q Consensus 195 ~~~~~~~~~l~~L~~ll~~~------~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~ 267 (532)
+..+ . ..++..+... .+..++..++.++..++... | .....+++.++.++.+ ++.....++.+
T Consensus 87 k~~I-r----~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~~-~~~~~e~~L~i 156 (1204)
T 3a6p_A 87 KVYL-K----NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSKQ-GETQTELVMFI 156 (1204)
T ss_dssp HHHH-H----HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHHT-CHHHHHHHHHH
T ss_pred HHHH-H----HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhcC-CHHHHHHHHHH
Confidence 2222 2 2344444222 35677888888898888764 3 2346788888888866 55556777777
Q ss_pred HHHhccC-------ChhHHHH---HHHh---CchHHHHHhhCC-------------------CCccchhhHHHHHHHhhc
Q 009568 268 LSYLSDG-------TNDKIQA---VIEA---GVCPRLVELLGH-------------------PSPSVLIPALRTVGNIVT 315 (532)
Q Consensus 268 L~~l~~~-------~~~~~~~---~~~~---~~l~~L~~lL~~-------------------~~~~v~~~al~~L~nl~~ 315 (532)
|..++.. ...+... .+.. .+++.+..++.. .+..+...++.++.+...
T Consensus 157 L~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~ 236 (1204)
T 3a6p_A 157 LLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYID 236 (1204)
T ss_dssp HHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHh
Confidence 7777632 1111111 1111 223333333322 123456677777776654
Q ss_pred CCcchhHHHhhcC--chHHHHHHhcCCCchhHHHHHHHHHHHHhcCC--HHHHHHHHHc---CCHHHHHHHHh-------
Q 009568 316 GDDFQTQCIITYG--ALPYLLGLLTHSHKKSIKKEACWTISNITAGN--RDQIQAVIDA---GLVGPLVNLLQ------- 381 (532)
Q Consensus 316 ~~~~~~~~~~~~~--~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~---~~i~~L~~ll~------- 381 (532)
--+ ...+.+.. +++.+..++. ++.++..|+.+|..++... ++....++.. ..+..++....
T Consensus 237 Wi~--~~~i~~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~ 311 (1204)
T 3a6p_A 237 WVS--MSHITAENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGL 311 (1204)
T ss_dssp TSC--HHHHHTTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSC
T ss_pred ccC--HHHHHhccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCC
Confidence 322 12333432 6777776664 5679999999999999732 4433333321 01224444432
Q ss_pred -cCchhHHHHHHHHHHHhhcCCCHHHHHHHHH-----------cCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568 382 -NAEFDIKKEAAWAISNATSGGTHEQIKYLVR-----------EGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 444 (532)
Q Consensus 382 -~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-----------~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~ 444 (532)
..+.++.+..+..+..+.. . ...++. .++++.+..+..+++..+...++.....+++.
T Consensus 312 ~e~d~e~~k~l~~ll~~lg~----~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 312 VEKHYVFLKRLCQVLCALGN----Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHHH----H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred ccHHHHHHHHHHHHHHHHHH----H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 1245677777777777652 1 111221 13467777777777777777777766656554
No 121
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.11 E-value=2.1 Score=48.18 Aligned_cols=300 Identities=10% Similarity=0.054 Sum_probs=165.3
Q ss_pred cHHHHHhhhcCC--ChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhc-CCCCHHHHHHHHHHHHHHhcC---
Q 009568 75 SLPAMVAGVWSD--DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLM-REDYPQLQFEAAWALTNIASG--- 148 (532)
Q Consensus 75 ~l~~lv~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~-~~~~~~~~~~a~~~L~~l~~~--- 148 (532)
.+..++..+.++ +...+.+|-..|..+-.. + ...+.+...|. ...++.+|.-|+..|.+....
T Consensus 12 ~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~---p--------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~ 80 (1204)
T 3a6p_A 12 QLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK---C--------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN 80 (1204)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH---C--------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC---c--------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc
Confidence 455666655555 667788888888877442 1 13444444443 333389999999999987642
Q ss_pred --ChhhHHHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhhhhhhhHHHHH
Q 009568 149 --TSENTKVVIDHGAVPIFVKLLAS---PSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRN 222 (532)
Q Consensus 149 --~~~~~~~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~ 222 (532)
+++.+..+. ..++..+...... ....++...+.++..|+... |..- .+.++.++.++. + ++.....
T Consensus 81 ~l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W-----p~ll~~L~~~~~-~-~~~~~e~ 152 (1204)
T 3a6p_A 81 GMSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW-----PDMLIELDTLSK-Q-GETQTEL 152 (1204)
T ss_dssp GSCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHHHHH-T-CHHHHHH
T ss_pred cCCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHhc-C-CHHHHHH
Confidence 233443333 3344444433211 35788998999999887431 2110 134666776663 2 3345666
Q ss_pred HHHHhhhccCCC-CCCC--ccc-----------ccchHHHHHHhhcC-------------------CCHHHHHHHHHHHH
Q 009568 223 ATWTLSNFCRGK-PQPP--FDQ-----------VRPALPALAQLVHS-------------------NDEEVLTDACWALS 269 (532)
Q Consensus 223 a~~~L~~L~~~~-~~~~--~~~-----------~~~~l~~L~~lL~~-------------------~d~~v~~~a~~~L~ 269 (532)
++.+|..|+... .... ... ...+++.+..++.. .+..+...++.++.
T Consensus 153 ~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~ 232 (1204)
T 3a6p_A 153 VMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLA 232 (1204)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHH
Confidence 777777776542 1110 000 11334444444432 12346677777777
Q ss_pred HhccCChhHHHHHHHhC--chHHHHHhhCCCCccchhhHHHHHHHhhcCCc--chhHHHhh---cCchHHHHHHhc----
Q 009568 270 YLSDGTNDKIQAVIEAG--VCPRLVELLGHPSPSVLIPALRTVGNIVTGDD--FQTQCIIT---YGALPYLLGLLT---- 338 (532)
Q Consensus 270 ~l~~~~~~~~~~~~~~~--~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~--~~~~~~~~---~~~l~~L~~lL~---- 338 (532)
+....-+- ..+.+.. +++.+..++. ++.++..|+.||..++.... .....++. ...+..++..+.
T Consensus 233 ~~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~ 308 (1204)
T 3a6p_A 233 GYIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADG 308 (1204)
T ss_dssp TTTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCC
T ss_pred HHHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCC
Confidence 66554331 2333332 6777776665 46799999999999997542 11111221 111233444432
Q ss_pred ---CCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-----------cCCHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009568 339 ---HSHKKSIKKEACWTISNITAGNRDQIQAVID-----------AGLVGPLVNLLQNAEFDIKKEAAWAISNATSG 401 (532)
Q Consensus 339 ---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-----------~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 401 (532)
+..+.++.+..+..+..+.. ....++. .++++.++.++.+++..+-..++.....+...
T Consensus 309 ~~~~e~d~e~~k~l~~ll~~lg~----~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 309 GGLVEKHYVFLKRLCQVLCALGN----QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHH----HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred CCCccHHHHHHHHHHHHHHHHHH----HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 11135667777777777752 1222222 13577778788777777777776655555443
No 122
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=94.67 E-value=1.1 Score=43.22 Aligned_cols=139 Identities=12% Similarity=0.097 Sum_probs=99.2
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHH-----HHHHHH----
Q 009568 342 KKSIKKEACWTISNITAGNRDQIQAVID-AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHE-----QIKYLV---- 411 (532)
Q Consensus 342 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~-----~~~~l~---- 411 (532)
+.....+++.||..+... ...+..++. .+.+..|...+.+..+.++..++..|..+|....+. ....+-
T Consensus 71 d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~ 149 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 149 (386)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence 346677888899888754 455666664 567888998898889999999988887777643311 111111
Q ss_pred --HcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 009568 412 --REGCIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEK 488 (532)
Q Consensus 412 --~~~~l~~L~~lL~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~ 488 (532)
+..-...+++.+. ..+.+....++..+..++...+.... -......|..+|..+.++.|....++++...
T Consensus 150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~-------R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-------RVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH-------HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHH-------HHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 2234667888777 45678888888888888887665432 2236677889999999999999999888655
No 123
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.62 E-value=1.1 Score=43.64 Aligned_cols=122 Identities=18% Similarity=0.190 Sum_probs=86.8
Q ss_pred hhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHh
Q 009568 215 AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 294 (532)
Q Consensus 215 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 294 (532)
.+....+-|+..+..+...-| ......+..++.+..+.|..|+..|+..|-.+|.. +.+. .+...|+++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP----~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~-----kiaDvL~Ql 108 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFP----ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLP-----RVADILTQL 108 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHH-----HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCh----hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhh-----hHHHHHHHH
Confidence 357777888888887776643 23356788899999999999999999999999976 3333 566788999
Q ss_pred hCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHH
Q 009568 295 LGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI 356 (532)
Q Consensus 295 L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 356 (532)
|...++.-...+-.+|..+...++. +.+..+...+..+ ++.+|..+...|..-
T Consensus 109 Lqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~-~e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 109 LQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQG-EDIVRERAIKFLSTK 161 (507)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHccc-chHHHHHHHHHHHHH
Confidence 9988877777677777766654442 2234444444445 677888877777543
No 124
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.55 E-value=0.6 Score=43.24 Aligned_cols=173 Identities=12% Similarity=0.060 Sum_probs=101.9
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCC----hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCc
Q 009568 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGA----VPIFVKLLAS-PSDDVREQAVWALGNVAGDSP 192 (532)
Q Consensus 118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~----i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~ 192 (532)
.+..+.++++.+ .+.++-++.++.-++. ++.....+.+... +..++..+.+ ..+..+-.++++++|+.....
T Consensus 104 ~l~~l~kil~WP--~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~ 180 (304)
T 3ebb_A 104 QLQILWKAINCP--EDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA 180 (304)
T ss_dssp HHHHHHHHHTSC--TTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH
T ss_pred HHHHHHHHHcCC--HHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch
Confidence 456666666443 3567777777777665 5555555544322 2233344443 346678899999999976654
Q ss_pred hhHHHHHhcCChHHHHHHhh---hhhhhHHHHHHHHHhhhccCCC-CCCCcccccchHHHHHHhhc-CCCHHHHHHHHHH
Q 009568 193 RCRDLVLSQGALIPLLAQLN---ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVH-SNDEEVLTDACWA 267 (532)
Q Consensus 193 ~~~~~~~~~~~l~~L~~ll~---~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~ 267 (532)
.+..+.. ....++..+. .+.+..++..++.++.|++-.. ..........++..+..++. ..|.+....++.+
T Consensus 181 -g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvA 257 (304)
T 3ebb_A 181 -GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVA 257 (304)
T ss_dssp -HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred -hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 5665554 2344444442 2346677878888888887643 11122223335555556664 3588999999999
Q ss_pred HHHhccCChhHHHHHHHhCchHHHHHhhC
Q 009568 268 LSYLSDGTNDKIQAVIEAGVCPRLVELLG 296 (532)
Q Consensus 268 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 296 (532)
|+++...+.+..+.....++-..+-....
T Consensus 258 LGtL~~~~~~~~~lak~l~~~~~v~~~~~ 286 (304)
T 3ebb_A 258 LGTLISDDSNAVQLAKSLGVDSQIKKYSS 286 (304)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHGGGGGG
T ss_pred HHHHHhCChhHHHHHHHcCHHHHHHHHHh
Confidence 99999776544333333344443434443
No 125
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.26 E-value=0.18 Score=46.73 Aligned_cols=141 Identities=11% Similarity=0.088 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhHhh-hCC----cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhC--CC
Q 009568 89 SLQLEATTQFRKLLSIERSPPIEEVI-QSG----VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH--GA 161 (532)
Q Consensus 89 ~~~~~a~~~l~~l~~~~~~~~~~~~i-~~g----~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~--g~ 161 (532)
+.++.++..+|-.+.. +...... +.+ ++..+...+.+...+..+..++++++|+.. ++..+..+... .+
T Consensus 117 ~~~fPvLDLlRl~~l~---p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~i 192 (304)
T 3ebb_A 117 DIVFPALDILRLSIKH---PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESL 192 (304)
T ss_dssp TTCHHHHHHHHHHTTS---HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHH
T ss_pred HhHHHHHHHHHHHHcC---ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHH
Confidence 4556666666666542 2222222 221 233344555444447789999999999998 66666666643 24
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568 162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (532)
Q Consensus 162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~ 233 (532)
++.+...+.+++..++..++.++.|++......++.-....++..+..++....+.+....++-+|.+|...
T Consensus 193 l~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 193 MSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp HHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence 445555555678999999999999997521110000000112334444454445778888888888888865
No 126
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.23 E-value=2.2 Score=47.23 Aligned_cols=172 Identities=15% Similarity=0.135 Sum_probs=109.3
Q ss_pred hHHHHHHhhhh---hhhHHHHHHHHHhhhcc----CCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q 009568 204 LIPLLAQLNER---AKLSMLRNATWTLSNFC----RGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN 276 (532)
Q Consensus 204 l~~L~~ll~~~---~~~~~~~~a~~~L~~L~----~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~ 276 (532)
+..+..++... .++.++..++.+++.|. ...+......+..+...+...+...+.+-+..++.+|+|+...
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-- 470 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-- 470 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence 44455555322 24556666666665554 3333333344566666777777788888889999999998642
Q ss_pred hHHHHHHHhCchHHHHHhhCC-----C--CccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhc-CCCchhHHHH
Q 009568 277 DKIQAVIEAGVCPRLVELLGH-----P--SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT-HSHKKSIKKE 348 (532)
Q Consensus 277 ~~~~~~~~~~~l~~L~~lL~~-----~--~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~ 348 (532)
..++.|..++.. . ...++..|+++|..++...+... -+.+++++. ...++++|-.
T Consensus 471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHH
T ss_pred ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHHH
Confidence 346667777642 1 23477889999999986544222 346777773 2237899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc-CchhHHHHHHHHHHHhhcCCCH
Q 009568 349 ACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN-AEFDIKKEAAWAISNATSGGTH 404 (532)
Q Consensus 349 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~~ 404 (532)
|+..|.... .+.. .+..+...+.. .+..|.......|.+++....+
T Consensus 534 A~~~Lm~t~-P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 534 SCIVFFESK-PSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHHTC-CCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHC-cCHH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 988885432 2222 33455555655 4778888888888888887655
No 127
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=94.03 E-value=4.3 Score=38.68 Aligned_cols=88 Identities=10% Similarity=0.138 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh
Q 009568 89 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL 168 (532)
Q Consensus 89 ~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 168 (532)
..+...+..+++++... ++. .-.++++.++++-.+.+ .++|.-.+..|...+....+.... +++.|..+
T Consensus 40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~~-----~l~~L~~L 108 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLLK-----LIANLNML 108 (386)
T ss_dssp THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 46888999999986642 232 22458999999988887 999999999999888755555433 45788888
Q ss_pred hCCCCHHHHHHHHHHHHHh
Q 009568 169 LASPSDDVREQAVWALGNV 187 (532)
Q Consensus 169 L~~~~~~v~~~a~~~L~nl 187 (532)
|.+.++.+...++.+.+++
T Consensus 109 L~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 109 LRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp HTCSSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHH
Confidence 8888999999999888887
No 128
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.85 E-value=1.3 Score=42.68 Aligned_cols=156 Identities=12% Similarity=0.109 Sum_probs=100.4
Q ss_pred HHHHhhhcCCCh-HHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcC----------CCCHHHHHHHHHHHHHH
Q 009568 77 PAMVAGVWSDDS-SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR----------EDYPQLQFEAAWALTNI 145 (532)
Q Consensus 77 ~~lv~~L~s~~~-~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~----------~~~~~~~~~a~~~L~~l 145 (532)
..++..|.++.. ......+..|+.-+......=++.++ .+++..|+.+|.. ..+...+..++.||..+
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 345666665532 22345677777777643222256666 6678888888741 11257889999999999
Q ss_pred hcCChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hh-HHHHH----------hcCChHHHHHHhh
Q 009568 146 ASGTSENTKVVID-HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP-RC-RDLVL----------SQGALIPLLAQLN 212 (532)
Q Consensus 146 ~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~~~----------~~~~l~~L~~ll~ 212 (532)
.. +......++. ...+..|...|.++++.++..++..|+.+|.... .. ...++ +..-+..++..+.
T Consensus 148 mN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~ 226 (383)
T 3eg5_B 148 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK 226 (383)
T ss_dssp TS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred hc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 87 5555555555 4678999999999999999999999999986543 21 22222 2334666677774
Q ss_pred hhhhhHHHHHHHHHhhhccCCC
Q 009568 213 ERAKLSMLRNATWTLSNFCRGK 234 (532)
Q Consensus 213 ~~~~~~~~~~a~~~L~~L~~~~ 234 (532)
...+.+....++..+-.+....
T Consensus 227 ~~~~~e~~~~~m~lIN~li~~~ 248 (383)
T 3eg5_B 227 SGTSIALKVGCLQLINALITPA 248 (383)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTC
T ss_pred ccCcHHHHHHHHHHHHHHHcCC
Confidence 4445566666655555555553
No 129
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=93.79 E-value=3.6 Score=36.89 Aligned_cols=100 Identities=9% Similarity=0.077 Sum_probs=71.9
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009568 77 PAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVV 156 (532)
Q Consensus 77 ~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i 156 (532)
-.+++.-+....+.+...+..++.++... ++. +. ..+++.++.+..+.+ .++|.-.+..|...+...++....
T Consensus 18 ~~lln~A~~~~~~~kl~~L~qa~el~~~~-dp~---ll-~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~~- 90 (257)
T 3gs3_A 18 VDWCNELVIASPSTKCELLAKVQETVLGS-CAE---LA-EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLPH- 90 (257)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHTTT-TGG---GH-HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHHH-
T ss_pred HHHHHHhhhcCcHHHHHHHHHHHHHHHcc-CHh---HH-HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34444444423368889999999987653 222 11 237888888776766 899999999999988655554443
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 009568 157 IDHGAVPIFVKLLASPSDDVREQAVWALGNV 187 (532)
Q Consensus 157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl 187 (532)
+++.|..++.++++.+...++.+.+++
T Consensus 91 ----~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 91 ----VINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp ----HHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 457888889888999999999888876
No 130
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.78 E-value=1.1 Score=39.71 Aligned_cols=97 Identities=11% Similarity=0.121 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcC----C------CCHHHHHHHHHHHHHHhcCChhhHHHHHh-CCC
Q 009568 93 EATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR----E------DYPQLQFEAAWALTNIASGTSENTKVVID-HGA 161 (532)
Q Consensus 93 ~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~----~------~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~ 161 (532)
.-+..|+..+...+..=++.+ ..+++..|+.+|.. . .+.+.+..++.||..+.. +......++. .++
T Consensus 20 ~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~ 97 (233)
T 2f31_A 20 SCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEG 97 (233)
T ss_dssp HHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSH
T ss_pred HHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHH
Confidence 345555555553211224555 45677777777642 1 125788999999999987 5555566655 467
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009568 162 VPIFVKLLASPSDDVREQAVWALGNVAGDS 191 (532)
Q Consensus 162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~ 191 (532)
+..|...|.++++.++..++..|+.+|..+
T Consensus 98 i~~l~~~L~s~~~~~r~~~leLL~~lc~~~ 127 (233)
T 2f31_A 98 ILLLVRAMDPAVPNMMIDAAKLLSALCILP 127 (233)
T ss_dssp HHHHHTTCCTTSHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHhCC
Confidence 888999999999999999999999888544
No 131
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=92.39 E-value=2 Score=41.14 Aligned_cols=259 Identities=13% Similarity=0.069 Sum_probs=119.3
Q ss_pred CCCHHHHHHHHHHHHHHhcC---ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChH
Q 009568 129 EDYPQLQFEAAWALTNIASG---TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALI 205 (532)
Q Consensus 129 ~~~~~~~~~a~~~L~~l~~~---~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~ 205 (532)
+.||.++. +...|..+... ++...+..++...+..|+.++.++|+.=|+..-.+|..+-+.-...|..+.. .+-.
T Consensus 96 ~sWpHLql-VYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~inn 173 (403)
T 3fga_B 96 AAWPHLQL-VYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINN 173 (403)
T ss_dssp TTHHHHHH-HHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHH
T ss_pred cCcHHHHH-HHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHH
Confidence 34566554 33444444331 2333344455567888999999999999999999998886554444443322 1223
Q ss_pred HHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCc-ccccchHHHHHHhhcCCCHHH-HHHHHHHHHHhccCChhHHHHHH
Q 009568 206 PLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF-DQVRPALPALAQLVHSNDEEV-LTDACWALSYLSDGTNDKIQAVI 283 (532)
Q Consensus 206 ~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~lL~~~d~~v-~~~a~~~L~~l~~~~~~~~~~~~ 283 (532)
.+.+.+.......-....+.+++.+..+-..+-. ....-...+|+++.....-.. -.....|+......++.....+
T Consensus 174 if~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v- 252 (403)
T 3fga_B 174 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV- 252 (403)
T ss_dssp HHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-
T ss_pred HHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-
Confidence 3334332221112222344444444444322222 122223344555544433221 1223333333333333332211
Q ss_pred HhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCc-chhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHH-----HHh
Q 009568 284 EAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD-FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS-----NIT 357 (532)
Q Consensus 284 ~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~-----nl~ 357 (532)
+..|+.+=-..+..-...-+.-+..+....+ ...+.+ ...+...+...+.++ +..|-..|+.... ++.
T Consensus 253 ----i~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i-~~~lf~~la~ci~S~-hfqVAErAL~~wnNe~i~~li 326 (403)
T 3fga_B 253 ----VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKI-MEPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLI 326 (403)
T ss_dssp ----HHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHH-HHHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHH
T ss_pred ----HHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHCCC-CHHHHHHHHHHhccHHHHHHH
Confidence 2222221111222222222333445554333 222222 224566777888887 7778777765542 222
Q ss_pred cCCHHHHHHHHHcCCHHHHHHHHhcC-chhHHHHHHHHHHHhhc
Q 009568 358 AGNRDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATS 400 (532)
Q Consensus 358 ~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~ 400 (532)
..+...+-.+ ++|.|.+..... +..++..+..++.-+..
T Consensus 327 ~~n~~~IlPi----i~p~L~~~~~~HWn~~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 327 SDNAAKILPI----MFPSLYRNSKTHWNKTIHGLIYNALKLFME 366 (403)
T ss_dssp HTTHHHHHHH----HHHHHHHTTSCCSCHHHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHH----HHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 2222222111 233333333333 67788888777766644
No 132
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=91.93 E-value=13 Score=40.98 Aligned_cols=239 Identities=15% Similarity=0.125 Sum_probs=138.0
Q ss_pred cHHHHHhhhcCCChHHHHHHHHHHHHHhcCC--CCCchhHhhhCC---cHHHHHHhhcCCCCHHHHHHHHHHHHHHhc--
Q 009568 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIE--RSPPIEEVIQSG---VVPRFVEFLMREDYPQLQFEAAWALTNIAS-- 147 (532)
Q Consensus 75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~--~~~~~~~~i~~g---~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~-- 147 (532)
.+-.|++.|+.-+.+........+. ... ...-.+.+...| .+..+.+++.+.. ... .+|+++|.....
T Consensus 312 ~f~~Lv~~lR~~~~e~L~~l~~~~~---~~~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~-l~~-~ea~~~l~~~~~~~ 386 (1056)
T 1lsh_A 312 KFLRLTAFLRNVDAGVLQSIWHKLH---QQKDYRRWILDAVPAMATSEALLFLKRTLASEQ-LTS-AEATQIVASTLSNQ 386 (1056)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHT---TSHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTC-SCH-HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh---ccHHHHHHHHHHhHhcCCHHHHHHHHHHHHcCC-CCH-HHHHHHHHHhhccC
Confidence 4556677777655443333333221 100 001123333333 3445566666654 222 224444443222
Q ss_pred -CChhhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhC----CCchhHHHHHhcCChHHHHHHhh---hhh
Q 009568 148 -GTSENTKVVIDHGAVPIFVKLLAS----PSDDVREQAVWALGNVAG----DSPRCRDLVLSQGALIPLLAQLN---ERA 215 (532)
Q Consensus 148 -~~~~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~----~~~~~~~~~~~~~~l~~L~~ll~---~~~ 215 (532)
.+++ .+..+..++.+ .++.+++.++.+++.++. ..+.+. ...++.+...+. ...
T Consensus 387 ~Pt~e---------~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~-----~~~v~~i~~~l~~~~~~~ 452 (1056)
T 1lsh_A 387 QATRE---------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP-----DELLQPLHDLLSQSSDRA 452 (1056)
T ss_dssp CCCHH---------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC-----GGGTHHHHHHHHHHHHTT
T ss_pred CCCHH---------HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCC-----HHHHHHHHHHHHHHHhcC
Confidence 2222 23555566655 467888888888888752 222211 122455555542 334
Q ss_pred hhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcC-------CCHHHHHHHHHHHHHhccCChhHHHHHHHhCch
Q 009568 216 KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS-------NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 288 (532)
Q Consensus 216 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~-------~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l 288 (532)
+.+-...++.+|.|+... ..++.|.+++.. ....++..|+|+|..+....+..+.
T Consensus 453 ~~~~~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~-------- 514 (1056)
T 1lsh_A 453 KEEEIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ-------- 514 (1056)
T ss_dssp CHHHHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------
T ss_pred ChHHHHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------
Confidence 566678889999998863 467778787742 1356888999999999876554433
Q ss_pred HHHHHhh--CCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCC
Q 009568 289 PRLVELL--GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360 (532)
Q Consensus 289 ~~L~~lL--~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 360 (532)
+.++++. ...+.++|..|+..|... .+.. ..+..+...+....+..|.......|.+++..+
T Consensus 515 ~il~~i~~n~~e~~EvRiaA~~~Lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 515 EIVLPIFLNVAIKSELRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHH---CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 4456666 345678888888777422 2212 235567777776558889988888999998743
No 133
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=91.30 E-value=0.91 Score=41.32 Aligned_cols=134 Identities=13% Similarity=0.113 Sum_probs=87.5
Q ss_pred chhhHHHHHHHhhcCCcchhHHHh-hcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--cCCHHHHHH
Q 009568 302 VLIPALRTVGNIVTGDDFQTQCII-TYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID--AGLVGPLVN 378 (532)
Q Consensus 302 v~~~al~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~L~~ 378 (532)
....|+..|.-++..-....+.+- +..++..|+ +.... .+.++..|+.+|+...+.+|..+..+.+ ..++..++.
T Consensus 44 ~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~ 121 (315)
T 3qml_C 44 RLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMA 121 (315)
T ss_dssp HHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHH
Confidence 455677777777754444443332 223333343 22334 6789999999999999999999988875 355666665
Q ss_pred HHhc-------CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCC--CHHHHHHHHHHHHHHHH
Q 009568 379 LLQN-------AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP--DPRIVTVCLEGLENILK 443 (532)
Q Consensus 379 ll~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~--d~~v~~~al~~L~~l~~ 443 (532)
-|.. ...-+++.-+.+|..++.... .+ ....+..|..++... ++.++..++..+..++.
T Consensus 122 ~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~-~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 122 ALSNLNDSNHRSSNILIKRYLSILNELPVTSE-DL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHCC--CCCHHHHHHHHHHHHHSCCCST-TC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHhcChH-hh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 5543 233566777777777777531 11 123556666666655 89999999999998885
No 134
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=90.87 E-value=4.9 Score=38.59 Aligned_cols=154 Identities=12% Similarity=0.130 Sum_probs=92.5
Q ss_pred HHhhhcCCChHH-HHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcC----C------CCHHHHHHHHHHHHHHhc
Q 009568 79 MVAGVWSDDSSL-QLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR----E------DYPQLQFEAAWALTNIAS 147 (532)
Q Consensus 79 lv~~L~s~~~~~-~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~----~------~~~~~~~~a~~~L~~l~~ 147 (532)
+++.|.++.... ....+..|+..+...+..-++.+. .+++..|+..|.. . .....+..++.||..+..
T Consensus 9 yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN 87 (386)
T 2bnx_A 9 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 87 (386)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC
Confidence 445555433221 223455666555542112245554 4667777776641 1 125789999999999987
Q ss_pred CChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hh-HHHHH----------hcCChHHHHHHhhhh
Q 009568 148 GTSENTKVVID-HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP-RC-RDLVL----------SQGALIPLLAQLNER 214 (532)
Q Consensus 148 ~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~~~----------~~~~l~~L~~ll~~~ 214 (532)
+......++. .+++..|...|.++++.++..++..|..+|.... .. ...++ +..-+.+++..+..+
T Consensus 88 -~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~ 166 (386)
T 2bnx_A 88 -NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 166 (386)
T ss_dssp -SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred -CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC
Confidence 5555555555 4678999999998999999999999988886443 11 22221 223455566666444
Q ss_pred hhhHHHHHHHHHhhhccCCC
Q 009568 215 AKLSMLRNATWTLSNFCRGK 234 (532)
Q Consensus 215 ~~~~~~~~a~~~L~~L~~~~ 234 (532)
.+.+....++..+-.+....
T Consensus 167 ~~~e~~~a~m~lIN~lv~~~ 186 (386)
T 2bnx_A 167 TSIALKVGCLQLINALITPA 186 (386)
T ss_dssp SCHHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHHHCCC
Confidence 55566665555555555553
No 135
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=89.74 E-value=7.7 Score=37.77 Aligned_cols=255 Identities=14% Similarity=0.071 Sum_probs=122.9
Q ss_pred CHHHHHHHHHHHHHHhcC---ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHH
Q 009568 131 YPQLQFEAAWALTNIASG---TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPL 207 (532)
Q Consensus 131 ~~~~~~~a~~~L~~l~~~---~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L 207 (532)
||.++. +...|..+... ++......++...+..|+.++.++++.=|+..-.+|..+-+.-...|..+... +-..+
T Consensus 131 WpHLql-VYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif 208 (449)
T 2npp_B 131 WPHLQL-VYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIF 208 (449)
T ss_dssp HHHHHH-HHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHH
T ss_pred chHHHH-HHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 454443 33444444331 23334455566778899999999999999999999988865544445443321 23344
Q ss_pred HHHhhhhhhhHHHHHHHHHhhhccCCCCCCCc-ccccchHHHHHHhhcCCCHHH-HHHHHHHHHHhccCChhHHHHHHHh
Q 009568 208 LAQLNERAKLSMLRNATWTLSNFCRGKPQPPF-DQVRPALPALAQLVHSNDEEV-LTDACWALSYLSDGTNDKIQAVIEA 285 (532)
Q Consensus 208 ~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~lL~~~d~~v-~~~a~~~L~~l~~~~~~~~~~~~~~ 285 (532)
.+.+.......-...++.+++.+..+-..+-. ....-...+|+++.....-.. -.....|+......++.....
T Consensus 209 ~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~---- 284 (449)
T 2npp_B 209 YRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP---- 284 (449)
T ss_dssp HHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH----
T ss_pred HHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH----
Confidence 44442222222334455566666655422222 222223344555555443221 122233333333333332221
Q ss_pred CchHHHHHhhCCCCccchhhHHHHHHHhhcCCc-chhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 009568 286 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD-FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364 (532)
Q Consensus 286 ~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 364 (532)
++..|+.+=-..+..-...-+.-|..+....+ .....+ ...+...+...+.++ +..|-..|+....|= . +
T Consensus 285 -vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i-~~~lF~~la~ci~S~-hfqVAErAL~~w~N~-----~-i 355 (449)
T 2npp_B 285 -VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKI-MEPLFRQLAKCVSSP-HFQVAERALYYWNNE-----Y-I 355 (449)
T ss_dssp -HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHH-HHHHHHHHHHHHTCS-CHHHHHHHHGGGGCH-----H-H
T ss_pred -HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHcCC-CHHHHHHHHHHHCCH-----H-H
Confidence 12222222111222222223344445554333 222222 224667777888887 778887776554321 1 1
Q ss_pred HHHHH---cCCHHHHHHHHhc----C-chhHHHHHHHHHHHhhc
Q 009568 365 QAVID---AGLVGPLVNLLQN----A-EFDIKKEAAWAISNATS 400 (532)
Q Consensus 365 ~~l~~---~~~i~~L~~ll~~----~-~~~v~~~a~~aL~nl~~ 400 (532)
..++. ..++|.++..+.. . +..++..|..++.-+..
T Consensus 356 ~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e 399 (449)
T 2npp_B 356 MSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 399 (449)
T ss_dssp HHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHT
T ss_pred HHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 12221 1145655555422 2 55677777777765544
No 136
>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B
Probab=88.68 E-value=0.32 Score=28.98 Aligned_cols=38 Identities=32% Similarity=0.535 Sum_probs=26.3
Q ss_pred HHhhhcCCC-CCchHHhhhhhHHHHHHHHHhhHHHHHhhhh
Q 009568 11 VRRNRYKVA-VDADEGRRRREDNMVEIRKNKREESLLKKRR 50 (532)
Q Consensus 11 ~~~~~~k~~-~~~~~~~~~r~~~~~~~Rk~~r~~~~~~~r~ 50 (532)
+|...||+. ...++..++| + ..+..|++|-+.++..|+
T Consensus 2 PR~sqYK~k~~~~~q~~rRr-~-~L~~QK~~R~D~~nhaR~ 40 (40)
T 2p8q_B 2 PRLSQYKSKYSSLEQSERRR-R-LLELQKSKRLDYVNHARR 40 (40)
T ss_dssp CCGGGTTCCCCSCSTTHHHH-H-HHHHHHHHHHHHHHTTTC
T ss_pred ccHHhhccccchhhHHHHHH-H-HHHHHHHHHHHHHHHhcC
Confidence 478899994 4444444444 4 578888899888877663
No 137
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=86.61 E-value=1.5 Score=34.98 Aligned_cols=73 Identities=12% Similarity=0.193 Sum_probs=52.9
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHh---cCCC--------H
Q 009568 415 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ---SHDN--------N 483 (532)
Q Consensus 415 ~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~---~~~~--------~ 483 (532)
+++.|..-|..+.+.++..+|.+|..++..|.. .|...+.+.- ..|..+. .-++ .
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~------------~f~~~~r~~~--~~Ik~l~~F~g~~dp~~G~d~g~ 115 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGS------------EFRREMQRNS--VAVRNLFHYKGHPDPLKGDALNK 115 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCH------------HHHHHHHHTT--HHHHTTTTCCCCCCTTTSSCHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCH------------HHHHHHHHhH--HHHHHHHhcCCCCCcccccchhH
Confidence 577888888888999999999999999876543 3555554442 3455553 3333 6
Q ss_pred HHHHHHHHHHHHhCCCCc
Q 009568 484 EIYEKAVKILETYWLEED 501 (532)
Q Consensus 484 ~v~~~a~~il~~~~~~~~ 501 (532)
.|+.+|.++++-+|+++.
T Consensus 116 ~VR~~AkEl~~ll~d~~~ 133 (140)
T 1vdy_A 116 AVRETAHETISAIFSEEN 133 (140)
T ss_dssp HHHHHHHHHHHHHTCCSS
T ss_pred HHHHHHHHHHHHHhCcCC
Confidence 799999999999998654
No 138
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=84.36 E-value=7.8 Score=36.92 Aligned_cols=120 Identities=16% Similarity=0.133 Sum_probs=81.5
Q ss_pred cCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 009568 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEK 449 (532)
Q Consensus 370 ~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~ 449 (532)
.++++.++.+-.+.+.++|+.++..|...+.. ..+... .+++.|..+|.+.|+.+++.++.+..+++...=..-
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~el~~-----~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i 135 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIELLL-----KLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWM 135 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888899888888999999999999887753 223322 267788888999999999999988888875433221
Q ss_pred hccCCC-ccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009568 450 NMGTAT-ADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW 497 (532)
Q Consensus 450 ~~~~~~-~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~ 497 (532)
-...+. ...+.....+.+. -+.|-.+..+.|..|+-.|.+.+++..
T Consensus 136 ~~~~~~~~~~e~~W~~m~~l--K~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 136 VKSRVISELQEACWDMVSAM--AGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHC-CCCHHHHHHHHHHHHH--HHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred hcCCCcchhHHHHHHHHHHH--HHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 110000 0012334444322 456666778899999999999988854
No 139
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=83.67 E-value=3.1 Score=33.76 Aligned_cols=73 Identities=10% Similarity=-0.075 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHhh
Q 009568 373 VGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC------PDPRIVTVCLEGLENILKVG 445 (532)
Q Consensus 373 i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~d~~v~~~al~~L~~l~~~~ 445 (532)
+..|..-+.+.++.++..|+..|-.+..++...+-..+.....+..|+.++.. .++.|+..++..+...-...
T Consensus 50 ~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 50 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 45667778888999999999999999988887776666666778888888863 57789999888887776543
No 140
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=83.19 E-value=3.1 Score=34.34 Aligned_cols=71 Identities=11% Similarity=0.137 Sum_probs=52.4
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHH
Q 009568 415 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH-DNNEIYEKAVKIL 493 (532)
Q Consensus 415 ~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~-~~~~v~~~a~~il 493 (532)
++..|..-|.+.++.++..+|..|..+++.+... |...+.....++.+..+... .++.|++++..+|
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~------------Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li 120 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKI------------FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLM 120 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH------------HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH------------HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 4666777788899999999999999998875432 44445555556666666543 7789999999999
Q ss_pred HHhC
Q 009568 494 ETYW 497 (532)
Q Consensus 494 ~~~~ 497 (532)
..+-
T Consensus 121 ~~W~ 124 (163)
T 1x5b_A 121 VEWS 124 (163)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 141
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=82.73 E-value=3 Score=33.47 Aligned_cols=72 Identities=4% Similarity=0.001 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568 373 VGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 444 (532)
Q Consensus 373 i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~ 444 (532)
+..|..-+.++++.++..|+..|-.++.++....-..+.....+..|..+++..++.|+..++..+...-..
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 455666778888899999988888888877766655555555667777777777889999988888766543
No 142
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=81.06 E-value=3 Score=33.44 Aligned_cols=71 Identities=13% Similarity=0.193 Sum_probs=52.0
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 009568 415 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE 494 (532)
Q Consensus 415 ~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~ 494 (532)
++..|..-|.+.++.+...+|..|..+++.+... |...+.....++.+..+....++.|+.++..++.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~------------f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~ 110 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI------------FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMV 110 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH------------HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH------------HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 4667777788889999999999998888765432 3444444445555666666678999999999998
Q ss_pred HhC
Q 009568 495 TYW 497 (532)
Q Consensus 495 ~~~ 497 (532)
.+-
T Consensus 111 ~W~ 113 (140)
T 3ldz_A 111 EWT 113 (140)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 143
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=80.86 E-value=6.2 Score=31.95 Aligned_cols=71 Identities=8% Similarity=-0.071 Sum_probs=56.4
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC------CCHHHHHHHHHHHHHHHH
Q 009568 373 VGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC------PDPRIVTVCLEGLENILK 443 (532)
Q Consensus 373 i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~d~~v~~~al~~L~~l~~ 443 (532)
+..|..-+.++++.++..|+..|-.+..++...+-..+.....+..|+.++.. .++.|+..++..+...-.
T Consensus 40 ~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45667778889999999999999999998877776776777788888888864 467888888887766543
No 144
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=80.78 E-value=13 Score=33.81 Aligned_cols=150 Identities=11% Similarity=0.096 Sum_probs=92.1
Q ss_pred chHHHHHHhhcCC------CHHHHHHHHHHHHHhccCChhHHHHHH-HhCchHHHHHhhCCCCccchhhHHHHHHHhhcC
Q 009568 244 PALPALAQLVHSN------DEEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316 (532)
Q Consensus 244 ~~l~~L~~lL~~~------d~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~ 316 (532)
.-+..+..++.++ |......++..|..++..-.--.+.+- +..++..|+ +.....+.++..|.++|+.....
T Consensus 22 ~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRN 100 (315)
T 3qml_C 22 SDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRN 100 (315)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHcc
Confidence 3344455555554 445677788888777754332223232 334444444 33445567899999999999999
Q ss_pred CcchhHHHhhc--CchHHHHHHhcC----C--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--chh
Q 009568 317 DDFQTQCIITY--GALPYLLGLLTH----S--HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFD 386 (532)
Q Consensus 317 ~~~~~~~~~~~--~~l~~L~~lL~~----~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~ 386 (532)
+|.....+.+. .++..+..-|.. . ....+.+.-+.+|.-|...+.. + ....+..|..++... ++.
T Consensus 101 NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d~~ 175 (315)
T 3qml_C 101 NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKDKQ 175 (315)
T ss_dssp CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTCHH
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCCHH
Confidence 99877766653 333333332321 1 1346677777788777765421 1 133567777777777 889
Q ss_pred HHHHHHHHHHHhh
Q 009568 387 IKKEAAWAISNAT 399 (532)
Q Consensus 387 v~~~a~~aL~nl~ 399 (532)
++..++..+..+.
T Consensus 176 ~k~Kvl~li~d~f 188 (315)
T 3qml_C 176 LQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999998888776
No 145
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=80.73 E-value=31 Score=30.78 Aligned_cols=141 Identities=13% Similarity=0.141 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhh
Q 009568 344 SIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDL 422 (532)
Q Consensus 344 ~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~l 422 (532)
..+-....-+..++. .++... .++++.++.+..+.+.++|+..+..+...+.. .++... .+++.|..+
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll-----~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-k~~l~~-----~~l~~L~~L 98 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELA-----EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-KVELLP-----HVINVVSML 98 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGH-----HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHhHH-----HHHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HHHHHH-----HHHHHHHHH
Confidence 455555555666544 333322 22566777766667889999999888877743 222222 267888888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCC-ccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009568 423 FVCPDPRIVTVCLEGLENILKVGEAEKNMGTAT-ADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW 497 (532)
Q Consensus 423 L~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~ 497 (532)
++++|+.+++.++.+..+++...=..--...+. ...+.....+.+ .-+.+-.+..+.|..|+-.|.+.+++..
T Consensus 99 l~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~--lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 99 LRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSL--IKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH--HHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH--HHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 999999999999998888876543322111000 001223333332 2466677778899999999999988854
No 146
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=80.34 E-value=5.3 Score=33.24 Aligned_cols=71 Identities=15% Similarity=0.186 Sum_probs=54.2
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhc------CCCHHHHHH
Q 009568 415 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS------HDNNEIYEK 488 (532)
Q Consensus 415 ~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~------~~~~~v~~~ 488 (532)
++..|..-|.+.++.++..+|..|..+++.+... |...+.....++.|..+.. ..++.|+++
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~------------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 118 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR------------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTK 118 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence 4667777788899999999999999999875432 4555666666777777754 356899999
Q ss_pred HHHHHHHhC
Q 009568 489 AVKILETYW 497 (532)
Q Consensus 489 a~~il~~~~ 497 (532)
+..+|..+-
T Consensus 119 il~li~~W~ 127 (171)
T 1juq_A 119 VIELLYSWT 127 (171)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 147
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=78.76 E-value=2.8 Score=34.63 Aligned_cols=74 Identities=12% Similarity=0.048 Sum_probs=54.5
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~ 147 (532)
+.+..+.+.|++.++.+++.|+..|-.++.........++....++..|+.++....++.++..++..+...+.
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 46677788888888999999999888888754333444566667888888888753447888888877766653
No 148
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=78.75 E-value=5.7 Score=32.16 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=54.8
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcC------CCHHHHHH
Q 009568 415 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH------DNNEIYEK 488 (532)
Q Consensus 415 ~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~------~~~~v~~~ 488 (532)
++..|..-|.+.++.++..||..|..+++.+.. .|...+.....++.|..+... .++.|+.+
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~------------~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 106 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGE------------KFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGR 106 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH------------HHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH------------HHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHH
Confidence 466777777899999999999999999886533 255666666677777777542 48899999
Q ss_pred HHHHHHHhC
Q 009568 489 AVKILETYW 497 (532)
Q Consensus 489 a~~il~~~~ 497 (532)
+..+|..+-
T Consensus 107 il~li~~W~ 115 (148)
T 1mhq_A 107 VIEILFSWT 115 (148)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998864
No 149
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=77.87 E-value=5.9 Score=32.06 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=54.5
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhc------CCCHHHHHH
Q 009568 415 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS------HDNNEIYEK 488 (532)
Q Consensus 415 ~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~------~~~~~v~~~ 488 (532)
++..|..-+.+.++.+...+|..|..+++.+... |...+....+++.|..+.. ..++.|+.+
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~------------fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 116 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR------------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNK 116 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHH------------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHH------------HHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHH
Confidence 4667777778899999999999999998765432 5555666666777777764 368899999
Q ss_pred HHHHHHHhC
Q 009568 489 AVKILETYW 497 (532)
Q Consensus 489 a~~il~~~~ 497 (532)
+..+|..+-
T Consensus 117 il~li~~W~ 125 (149)
T 3g2s_A 117 ILELLYSWT 125 (149)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998864
No 150
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=77.04 E-value=7.7 Score=32.27 Aligned_cols=71 Identities=11% Similarity=-0.026 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC------CCHHHHHHHHHHHHHHHH
Q 009568 373 VGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC------PDPRIVTVCLEGLENILK 443 (532)
Q Consensus 373 i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~d~~v~~~al~~L~~l~~ 443 (532)
+..|..-+.+.++.++..|+..|-.+..++...+...+.....+..|+.++.. .+..|+..++..+...-.
T Consensus 52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 52 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45677778889999999999999999988766666666666778888888763 357888888887776643
No 151
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=76.59 E-value=9.8 Score=41.53 Aligned_cols=187 Identities=13% Similarity=0.068 Sum_probs=110.0
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh---hhhhHHHHHHHHHhhhccCCC-CCC
Q 009568 162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE---RAKLSMLRNATWTLSNFCRGK-PQP 237 (532)
Q Consensus 162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~---~~~~~~~~~a~~~L~~L~~~~-~~~ 237 (532)
+.-|+.+-.+...+||..|-.+|......-+..+..+ ++.+++.|.. ..+.+-.+-|+++|..-.... -..
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~ 209 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMT 209 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGG
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhc
Confidence 4667777777889999999999999887666666554 7778888854 345556666666665111000 112
Q ss_pred CcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC--------------------C----hhHHHHH----------H
Q 009568 238 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG--------------------T----NDKIQAV----------I 283 (532)
Q Consensus 238 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~--------------------~----~~~~~~~----------~ 283 (532)
.......+++.|++....+.+.++..+-.+...+... + ...+... .
T Consensus 210 d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~~ 289 (997)
T 1vsy_5 210 DYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREYY 289 (997)
T ss_dssp CHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHHH
T ss_pred ChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456677777776666666544443332222210 0 0000110 0
Q ss_pred H---hCchHHHHHhh-CCCC--ccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 009568 284 E---AGVCPRLVELL-GHPS--PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 357 (532)
Q Consensus 284 ~---~~~l~~L~~lL-~~~~--~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 357 (532)
. .++...++.+. .... +.....++..+.++....+ ......++..+++.+.++ .|.+|+.|..++..+.
T Consensus 290 ~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d----~~~~~~~v~~~~~~l~~d-hp~~R~~a~~~l~~il 364 (997)
T 1vsy_5 290 LSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLE----SKPDKRAVFSIISQISTK-HPEIIHLVVKSLLSTC 364 (997)
T ss_dssp HHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSS----CCCCHHHHHHHHGGGGGC-CHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHH
Confidence 0 13333444554 3345 7788887888666664333 122334567788888888 9999999998886665
Q ss_pred c
Q 009568 358 A 358 (532)
Q Consensus 358 ~ 358 (532)
.
T Consensus 365 ~ 365 (997)
T 1vsy_5 365 N 365 (997)
T ss_dssp H
T ss_pred H
Confidence 3
No 152
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=74.90 E-value=52 Score=30.30 Aligned_cols=187 Identities=12% Similarity=0.097 Sum_probs=104.3
Q ss_pred cchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHH-hc---CC----CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 009568 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL-LT---HS----HKKSIKKEACWTISNITAGNRDQIQAVIDAGL 372 (532)
Q Consensus 301 ~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l-L~---~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 372 (532)
.++...++.+.......+. .+. +....+|.|+.. |. .. .+++|-.-...++..+...-.+.+..++++ +
T Consensus 44 ~vKkeiLkLiet~i~~~~d-~~~-v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~-V 120 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSND-PQM-VAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDA-V 120 (321)
T ss_dssp HHHHHHHHHHHHHHTTCSC-HHH-HHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHcCCC-HHH-HHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHH-H
Confidence 4666777777777765543 222 334566666643 31 11 134555555555555544333334444443 4
Q ss_pred HHHHHHHHhc---CchhHHHHHHHHHHHhhcCC-------CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 009568 373 VGPLVNLLQN---AEFDIKKEAAWAISNATSGG-------THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL 442 (532)
Q Consensus 373 i~~L~~ll~~---~~~~v~~~a~~aL~nl~~~~-------~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~ 442 (532)
+..=+.++.. +-|+.|.+-...|.++...+ ++++.+. +++.++-..++++.+|-..+|.++..++
T Consensus 121 Fe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fkl-----vidsiiWa~kH~~r~V~e~gL~il~~ll 195 (321)
T 1w9c_A 121 FECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKL-----VLDSIIWAFKHTMRNVADTGLQILFTLL 195 (321)
T ss_dssp HHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 5555666664 35778877766666665433 3333333 5677777889999999999999999998
Q ss_pred HhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCc
Q 009568 443 KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEED 501 (532)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~~ 501 (532)
...++... ..+.|...+--.=..+.+.-+.......-.+.-..+|..+|.-.+
T Consensus 196 ~n~~~~~~------~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~~ve 248 (321)
T 1w9c_A 196 QNVAQEEA------AAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVE 248 (321)
T ss_dssp HHHHHCHH------HHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHhcChH------HHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHHHHH
Confidence 87654111 233333322211122333444444444445555667777775443
No 153
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=70.72 E-value=6 Score=31.13 Aligned_cols=95 Identities=18% Similarity=0.158 Sum_probs=61.4
Q ss_pred CHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 009568 372 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNM 451 (532)
Q Consensus 372 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~ 451 (532)
++|.|+..|++.+..+...++..|..+- .. +++.+.+.|.+.|..-...+ |..++..-...
T Consensus 32 ~lp~LL~WLQD~NWPvA~~i~~~L~~~~----~~---------l~p~I~~vl~s~D~~W~ywi---l~~lv~~~~~~--- 92 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPIAKDILPVVVLHQ----SI---------AMPHILTILQGNDIMWKYWV---IKLMIPYLIYP--- 92 (134)
T ss_dssp HHHHHHGGGSCTTSTTHHHHHHHHHHTH----HH---------HHHHHHHHHHSSCHHHHHHH---HHHHGGGCCHH---
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHcc----Hh---------hHHHHHHHHHcCChHHHHHH---HHHHHHcCCHH---
Confidence 5688999999999998888887776542 12 45556667778887655444 43443222111
Q ss_pred cCCCccchHHHHHHHHhccHHHHHHHhcC-----CCHHHHHHHHHHHHHhCCC
Q 009568 452 GTATADVNQYAQLVEEAEGLEKIENLQSH-----DNNEIYEKAVKILETYWLE 499 (532)
Q Consensus 452 ~~~~~~~~~~~~~~~~~g~~~~l~~L~~~-----~~~~v~~~a~~il~~~~~~ 499 (532)
....+ ...|+.+..+ ..+++.+.|..||++||.+
T Consensus 93 ---------~~~~l-----~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~~~ 131 (134)
T 3ut4_A 93 ---------NKQLV-----KSELERLSSLEIINEDIREIVNLSKDYLHFYYPD 131 (134)
T ss_dssp ---------HHHHH-----HHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC--
T ss_pred ---------HHHHH-----HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHccc
Confidence 12222 3567777665 4678999999999999863
No 154
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=69.86 E-value=17 Score=34.54 Aligned_cols=103 Identities=16% Similarity=0.102 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHHHhcC---ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHH
Q 009568 130 DYPQLQFEAAWALTNIASG---TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIP 206 (532)
Q Consensus 130 ~~~~~~~~a~~~L~~l~~~---~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~ 206 (532)
.||.++. +...|..+... ++...+..++...+..|+.++.++|+.=|+....+|..+-+.-...|..+.. .+-..
T Consensus 142 sWpHLql-VYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~ni 219 (392)
T 2jak_A 142 AWPHLQL-VYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNI 219 (392)
T ss_dssp THHHHHH-HHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHH
T ss_pred CChhHHH-HHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3455443 33344444331 2233344455567888999999999999999999998875544444443322 23344
Q ss_pred HHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568 207 LLAQLNERAKLSMLRNATWTLSNFCRGK 234 (532)
Q Consensus 207 L~~ll~~~~~~~~~~~a~~~L~~L~~~~ 234 (532)
+.+.+.......-...++++++.+..+-
T Consensus 220 f~~fiye~e~~~GIaeLLeilgsIIngf 247 (392)
T 2jak_A 220 FYRFIYETEHHNGIAELLEILGSIINGF 247 (392)
T ss_dssp HHHHHTSSCCCSCHHHHHHHHHHHHHTC
T ss_pred HHHHhhccCCCCCHHHHHHHHHHHHhcc
Confidence 4555432222223334555555555554
No 155
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=69.61 E-value=3.4 Score=36.27 Aligned_cols=74 Identities=11% Similarity=0.107 Sum_probs=53.9
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~ 147 (532)
+.+..|.+.|++.++.+++.|+..|-.++.+-......++....++..|+.+++...++.++..++..+...+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 46778888888899999999999888887754233355555666777787777654447888888877776653
No 156
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=66.50 E-value=13 Score=32.49 Aligned_cols=70 Identities=13% Similarity=0.275 Sum_probs=50.5
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHH-hcCCCHHHHHHHHHHH
Q 009568 415 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENL-QSHDNNEIYEKAVKIL 493 (532)
Q Consensus 415 ~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L-~~~~~~~v~~~a~~il 493 (532)
++..|..-|.+.++.++..+|..|..+++.+... |...+.....++.|..| ....++.|++++..+|
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~------------f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li 113 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQT------------VHDEVANKQTMEELKDLLKRQVEVNVRNKILYLI 113 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHH------------HHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchH------------HHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 4666777778999999999999999998865442 33344444444555544 3567789999999999
Q ss_pred HHh
Q 009568 494 ETY 496 (532)
Q Consensus 494 ~~~ 496 (532)
..+
T Consensus 114 ~~W 116 (226)
T 3zyq_A 114 QAW 116 (226)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 157
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=65.84 E-value=20 Score=39.08 Aligned_cols=219 Identities=12% Similarity=0.100 Sum_probs=114.7
Q ss_pred hHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc----CCCHHHHHHHHHHHH-----HhccC
Q 009568 204 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH----SNDEEVLTDACWALS-----YLSDG 274 (532)
Q Consensus 204 l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~----~~d~~v~~~a~~~L~-----~l~~~ 274 (532)
+.-|+.+- -+...+++..|-.+|......-+... .-++|.+++.|. ..+.+-..-|+++|. ..+..
T Consensus 135 l~dL~~Ls-~S~Y~~VR~~AQ~~L~~~~~~~~gs~----~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~ 209 (997)
T 1vsy_5 135 LVDIIQLA-TSLYPDIYKPAQGTLVHCMKQLVGSY----GVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMT 209 (997)
T ss_dssp HHHHHHHH-TSSCHHHHHHHHHHHHHHHTTBTTHH----HHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGG
T ss_pred HHHHHHHh-cCchHHHHHHHHHHHHHHHHhcccHH----HHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhc
Confidence 44455544 56677888888888888776533222 345555555554 345566666666554 11111
Q ss_pred ChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcc-hhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHH
Q 009568 275 TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF-QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI 353 (532)
Q Consensus 275 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 353 (532)
+-.. -..+++.|+.....+++.++..+-.+...+..+... ..-.+++...+ .-+..+ +..+- .+....
T Consensus 210 d~~~-----~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~----~~i~~~-d~~i~-~~~~~~ 278 (997)
T 1vsy_5 210 DYKD-----IGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAF----LPLAPP-DGTIN-LQVEAV 278 (997)
T ss_dssp CHHH-----HHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGT----GGGCCS-CSSTT-SHHHHH
T ss_pred ChHH-----HHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHH----hccCCC-cHHHH-HHHHHH
Confidence 1111 114566677776667788887776666655543211 00011121221 222222 22221 111111
Q ss_pred HHHhcCCHHHHHHHHHcCCHHHHHHHHhc-Cc--hhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHH
Q 009568 354 SNITAGNRDQIQAVIDAGLVGPLVNLLQN-AE--FDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRI 430 (532)
Q Consensus 354 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~--~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v 430 (532)
..............+ .++...|+...++ .+ .+....++..|.++...-+... ...++..+...+.+++|.+
T Consensus 279 ~~~~~~~r~~~~~~~-~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~~-----~~~~v~~~~~~l~~dhp~~ 352 (997)
T 1vsy_5 279 KLAKKKKREYYLSLL-VDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESKP-----DKRAVFSIISQISTKHPEI 352 (997)
T ss_dssp HHHTTHHHHHHHHHH-HHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCCC-----CHHHHHHHHGGGGGCCHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCCC-----CHHHHHHHHHhhcCCCHHH
Confidence 111111011111111 1244555666633 36 7888888888777764321100 1124666777888999999
Q ss_pred HHHHHHHHHHHHHh
Q 009568 431 VTVCLEGLENILKV 444 (532)
Q Consensus 431 ~~~al~~L~~l~~~ 444 (532)
+..++.++..++..
T Consensus 353 R~~a~~~l~~il~~ 366 (997)
T 1vsy_5 353 IHLVVKSLLSTCNK 366 (997)
T ss_dssp HHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888875
No 158
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=65.42 E-value=15 Score=31.91 Aligned_cols=71 Identities=20% Similarity=0.239 Sum_probs=49.3
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHh-cCCCHHHHHHHHHHH
Q 009568 415 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ-SHDNNEIYEKAVKIL 493 (532)
Q Consensus 415 ~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~-~~~~~~v~~~a~~il 493 (532)
++..|..-|.+.++.++..+|..|..+++.+... |...+.....++.|..+. ...++.|++++..++
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~------------f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li 110 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP------------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELV 110 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHH------------HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 4556666778899999999999999999875432 333333333444444443 356789999999888
Q ss_pred HHhC
Q 009568 494 ETYW 497 (532)
Q Consensus 494 ~~~~ 497 (532)
+.+-
T Consensus 111 ~~W~ 114 (220)
T 1dvp_A 111 QTWA 114 (220)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 159
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=63.52 E-value=5.1 Score=34.98 Aligned_cols=74 Identities=14% Similarity=0.084 Sum_probs=52.7
Q ss_pred ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 009568 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147 (532)
Q Consensus 74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~ 147 (532)
+.+..+.+.|++.++.++..|+..|-.++..-......++....++..|+.++....++.++..++..+...+.
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 46677888888899999999999888888753223345555666788888877654447888877766666553
No 160
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=62.50 E-value=66 Score=30.59 Aligned_cols=183 Identities=11% Similarity=0.054 Sum_probs=98.9
Q ss_pred cchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC-CCccchhhHHHHHHHhhcCCc---
Q 009568 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDD--- 318 (532)
Q Consensus 243 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~--- 318 (532)
...+-.|+.++.++|+.-+.....+|..+-........ .+...+-..+..++.. ....-..+.+.++|.+..|..
T Consensus 173 ~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~-~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PL 251 (392)
T 2jak_A 173 QKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRA-YIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPL 251 (392)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCC
Confidence 45777888999999999988888888776543333322 3333344455666544 334556788999999988764
Q ss_pred --chhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHH
Q 009568 319 --FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAIS 396 (532)
Q Consensus 319 --~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 396 (532)
+... ++ ...|+.+.+...-......-..++..+...++.....+ +..|++.--..+..-...-+.-|.
T Consensus 252 Keehk~-Fl----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~ele 321 (392)
T 2jak_A 252 KEEHKI-FL----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELE 321 (392)
T ss_dssp CHHHHH-HH----HHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHSSCSSCCTTHHHHHHHHH
T ss_pred cHHHHH-HH----HHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHH-----HHHHHHhCCCCCchHHHHHHHHHH
Confidence 1211 11 23444444443122233344455555544334322222 223333222222222222233344
Q ss_pred HhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHH
Q 009568 397 NATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEG 437 (532)
Q Consensus 397 nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~ 437 (532)
.+....+++....+. ..+...+..++.+++-+|.+.|+..
T Consensus 322 eiLe~~~~~~f~~i~-~~lF~~la~ci~S~hfqVAErAL~~ 361 (392)
T 2jak_A 322 EILDVIEPSEFVKIM-EPLFRQLAKCVSSPHFQVAERALYY 361 (392)
T ss_dssp HHHHTCCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 444444555544422 2366777788888888888877653
No 161
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=61.49 E-value=23 Score=28.20 Aligned_cols=73 Identities=18% Similarity=0.161 Sum_probs=51.7
Q ss_pred CHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc-CChHHHHhhcCCCC--------HHHHHHHHHHHHHHH
Q 009568 372 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE-GCIKPLCDLFVCPD--------PRIVTVCLEGLENIL 442 (532)
Q Consensus 372 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~l~~L~~lL~~~d--------~~v~~~al~~L~~l~ 442 (532)
+++.|..-|...++.++..|+..|-.++..+++.+...+... ..|..+.++--.+| ..|+..|-+++..|+
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 567788888888999999999999999999998888877654 22333333222223 357777777777665
Q ss_pred Hh
Q 009568 443 KV 444 (532)
Q Consensus 443 ~~ 444 (532)
..
T Consensus 130 d~ 131 (140)
T 1vdy_A 130 SE 131 (140)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 162
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=59.59 E-value=58 Score=31.34 Aligned_cols=135 Identities=10% Similarity=0.031 Sum_probs=79.0
Q ss_pred chhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh
Q 009568 302 VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ 381 (532)
Q Consensus 302 v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 381 (532)
.+.+++.++.-++...+... .+...+-..+.+. .+..+--++++++|+.....-..+.+.+..+...++..+.
T Consensus 242 ~~FPaLDLLRl~v~~p~~~~------~l~~li~~~l~~~-~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~ 314 (425)
T 3pst_A 242 IKTPAYDIVRLIVKKLPYSS------DIKDYIEEGLGNK-NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETID 314 (425)
T ss_dssp CCHHHHHHHHHHGGGCSCGG------GGHHHHHHHTTCS-SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSC
T ss_pred cccHHHHHHHHHHcCCchHH------HHHHHHHHhcCCC-ChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHH
Confidence 47788888888876555221 1222333344444 7888999999999998754322222222223444555442
Q ss_pred --------cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcC---------CCCHHHHHHHHHHHHHHHHh
Q 009568 382 --------NAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV---------CPDPRIVTVCLEGLENILKV 444 (532)
Q Consensus 382 --------~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~---------~~d~~v~~~al~~L~~l~~~ 444 (532)
..+..++..++..+.|++....... .+..++..+..++. ..|++....+|-+|.+++..
T Consensus 315 ~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~----~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~ 390 (425)
T 3pst_A 315 TEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN----SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 390 (425)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC----SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccCCCchHHHHHHHHHHHHHHHHhccc----chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 1245688888888888876311000 00112334444443 25889999999999999965
Q ss_pred hhh
Q 009568 445 GEA 447 (532)
Q Consensus 445 ~~~ 447 (532)
++.
T Consensus 391 ~~~ 393 (425)
T 3pst_A 391 EPT 393 (425)
T ss_dssp CHH
T ss_pred CHH
Confidence 443
No 163
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=58.69 E-value=25 Score=28.59 Aligned_cols=71 Identities=14% Similarity=0.207 Sum_probs=49.5
Q ss_pred ChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHH-HHHHh---cCCCHHHHHHH
Q 009568 415 CIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEK-IENLQ---SHDNNEIYEKA 489 (532)
Q Consensus 415 ~l~~L~~lL~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-l~~L~---~~~~~~v~~~a 489 (532)
++..|..-|. ..++.++..||..|..+++.+.. .|...+.....++. +..+. ..+...|++++
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~------------~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~ki 121 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGH------------RFHVLVASQDFVESVLVRTILPKNNPPTIVHDKV 121 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCH------------HHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCH------------HHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHH
Confidence 4566666776 57899999999999999886533 24444555555555 44443 23557999999
Q ss_pred HHHHHHhC
Q 009568 490 VKILETYW 497 (532)
Q Consensus 490 ~~il~~~~ 497 (532)
..+|..+-
T Consensus 122 l~li~~W~ 129 (157)
T 1elk_A 122 LNLIQSWA 129 (157)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 164
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=57.42 E-value=30 Score=27.66 Aligned_cols=74 Identities=12% Similarity=0.166 Sum_probs=56.2
Q ss_pred HHHHHHHcCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhc
Q 009568 406 QIKYLVREGCIKPLCDLFVC------PDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS 479 (532)
Q Consensus 406 ~~~~l~~~~~l~~L~~lL~~------~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~ 479 (532)
....+++.|++..+-..|.- ++..++...+.+|..+= . -...+.++|.-..+..|..
T Consensus 53 l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP-I----------------~~e~Lk~SglGkvv~~l~k 115 (145)
T 2xpp_A 53 LQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK-I----------------HKEHLVTSGVGKIVYFYSI 115 (145)
T ss_dssp THHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC-C----------------CHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC-C----------------CHHHhhcCCCCcchhhhhc
Confidence 34667788999888888863 55678888888887761 1 0456777888888988876
Q ss_pred C--CCHHHHHHHHHHHHHh
Q 009568 480 H--DNNEIYEKAVKILETY 496 (532)
Q Consensus 480 ~--~~~~v~~~a~~il~~~ 496 (532)
| +.++++..|..+++++
T Consensus 116 ~~~et~~nk~la~~Li~~W 134 (145)
T 2xpp_A 116 NPKESKEVRASAKALVQKW 134 (145)
T ss_dssp CTTSCHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHH
Confidence 6 5567999999999886
No 165
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=53.98 E-value=1.5e+02 Score=28.21 Aligned_cols=231 Identities=11% Similarity=0.053 Sum_probs=126.3
Q ss_pred cchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC-CCccchhhHHHHHHHhhcCCc---
Q 009568 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDD--- 318 (532)
Q Consensus 243 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~--- 318 (532)
...+-.|+.++.++|+.-+...-.+|..+-........ .+...+-..+..++-. ....-....+.++|.+..|..
T Consensus 128 ~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~-~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PL 206 (403)
T 3fga_B 128 QKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRA-YIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPL 206 (403)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCc
Confidence 34566788899999999888888888776544333322 2222333344444422 233445678899999987753
Q ss_pred --chhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHH
Q 009568 319 --FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAIS 396 (532)
Q Consensus 319 --~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 396 (532)
+.... +...|+.+.+...-...-..-..++..+...++.....+ +..|++.--..+..-...-+.-|.
T Consensus 207 keehk~f-----l~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~Ele 276 (403)
T 3fga_B 207 KEEHKIF-----LLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELE 276 (403)
T ss_dssp CHHHHHH-----HHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHHHHHH
T ss_pred hHHHHHH-----HHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCcHHHHHHHHHHH
Confidence 12211 123444454444223334455566666655444433222 223332222233222222333455
Q ss_pred HhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHH--HHhhhhhhhccCCCccchHHHHHHHHhccHHHH
Q 009568 397 NATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENI--LKVGEAEKNMGTATADVNQYAQLVEEAEGLEKI 474 (532)
Q Consensus 397 nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l 474 (532)
.+....++.....+.. .+...+..++.+++-.|...|+....|= +..-.. ........+ ...|
T Consensus 277 ~iLe~~~~~~f~~i~~-~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~---------n~~~IlPii-----~p~L 341 (403)
T 3fga_B 277 EILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD---------NAAKILPIM-----FPSL 341 (403)
T ss_dssp HHHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHT---------THHHHHHHH-----HHHH
T ss_pred HHHHhCCHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHH---------hHHHHHHHH-----HHHH
Confidence 5666556555444322 3677888888999999988887644221 111111 011112222 3455
Q ss_pred HH-HhcCCCHHHHHHHHHHHHHhCCC
Q 009568 475 EN-LQSHDNNEIYEKAVKILETYWLE 499 (532)
Q Consensus 475 ~~-L~~~~~~~v~~~a~~il~~~~~~ 499 (532)
.. ...|=|..|+..|..++..+-+-
T Consensus 342 ~~~~~~HWn~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 342 YRNSKTHWNKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp HHTTSCCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 44 47888999999999999877543
No 166
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=53.04 E-value=1.7e+02 Score=30.99 Aligned_cols=115 Identities=10% Similarity=0.040 Sum_probs=64.3
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhh---hh---hhhHHHHHHHH
Q 009568 152 NTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN---ER---AKLSMLRNATW 225 (532)
Q Consensus 152 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~---~~---~~~~~~~~a~~ 225 (532)
.++.+++ -+.|.+...+.+.+..+...+..+|.++|.-.|.+++.+ ++.++..+. .+ ..+.-...++.
T Consensus 332 ~~~~fV~-~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lV-----lP~vL~r~y~sLe~~~l~e~Hrl~~aL~ 405 (799)
T 1vsy_4 332 CHEEIVE-IFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLI-----YDKILIDLYDTLADQFINSRHRIISSLK 405 (799)
T ss_dssp HHHHHHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHH-----HHHHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCcccee-----hHHHHHHHHHHhccccccchhHHHHHHH
Confidence 3444443 234555566778889999999999999998777555554 444444432 12 23444445555
Q ss_pred HhhhccCCCCC--CCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 009568 226 TLSNFCRGKPQ--PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS 272 (532)
Q Consensus 226 ~L~~L~~~~~~--~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~ 272 (532)
+|..+++.-.. .-...+..++..++.-+..+|+.--..++..+..++
T Consensus 406 ~l~~~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~ 454 (799)
T 1vsy_4 406 QFTRVIRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIA 454 (799)
T ss_dssp HHHTTHHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHH
Confidence 66555543211 011122344444555556778776666666665554
No 167
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=52.05 E-value=1.1e+02 Score=26.19 Aligned_cols=134 Identities=10% Similarity=-0.011 Sum_probs=78.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccC-ChhHHHHHHHhCchHHHHHhhC-CCCccchhhHHHHHHHhhcCCcchhHHHh
Q 009568 248 ALAQLVHSNDEEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDFQTQCII 325 (532)
Q Consensus 248 ~L~~lL~~~d~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~~~ 325 (532)
.+..+..++.-+.+..++..+...... .++. ++.+-.++. -+++.+.-..+.+++.++...+.
T Consensus 59 ~~~~L~~s~~~E~r~la~~~l~~~~~~~~~~~---------l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~------ 123 (220)
T 2b6c_A 59 EIEAYYQKTEREYQYVAIDLALQNVQRFSLEE---------VVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLT------ 123 (220)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHTGGGCCHHH---------HHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGG------
T ss_pred HHHHHHcCchhHHHHHHHHHHHHHHhhCCHHH---------HHHHHHHhccCCcHHHHHHHHHHHHHHHHHChH------
Confidence 444555666667777777777655422 2211 222233343 35666666555677777654332
Q ss_pred hcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCH
Q 009568 326 TYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH 404 (532)
Q Consensus 326 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~ 404 (532)
.+.+.+.....++ +.-+++.|+-.+..... ++++. +++.+-..+.+++.-|++.+.|+|..+... ++
T Consensus 124 --~~~~~i~~W~~s~-~~w~rR~ai~~~l~~~~~~~~~~--------~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~-~~ 191 (220)
T 2b6c_A 124 --ELPTIFALFYGAE-NFWNRRVALNLQLMLKEKTNQDL--------LKKAIIYDRTTEEFFIQKAIGWSLRQYSKT-NP 191 (220)
T ss_dssp --GHHHHHHHHTTCS-SHHHHHHHHHTTTTCGGGCCHHH--------HHHHHHHTTTCCCHHHHHHHHHHHHHHTTT-CH
T ss_pred --HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHCCCHHH--------HHHHHHHhCCChHHHHHHHHHHHHHHHHhh-CH
Confidence 1345677888887 88888877664432222 23321 133344466777889999999999999887 44
Q ss_pred HHHH
Q 009568 405 EQIK 408 (532)
Q Consensus 405 ~~~~ 408 (532)
+...
T Consensus 192 ~~v~ 195 (220)
T 2b6c_A 192 QWVE 195 (220)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 168
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=51.23 E-value=52 Score=26.68 Aligned_cols=71 Identities=10% Similarity=0.097 Sum_probs=51.6
Q ss_pred HHHHHHHHh-cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHH-HHhhcCC---CCHHHHHHHHHHHHHHHH
Q 009568 373 VGPLVNLLQ-NAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKP-LCDLFVC---PDPRIVTVCLEGLENILK 443 (532)
Q Consensus 373 i~~L~~ll~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~-L~~lL~~---~d~~v~~~al~~L~~l~~ 443 (532)
+..|..-+. +.++.++..|+..|-.+..++...+...+.....+.. |+.++.. ++..|+..++..+...-.
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 445666776 4788999999999999988877776666666667776 6777642 345788888887776654
No 169
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=50.47 E-value=1.8e+02 Score=28.13 Aligned_cols=230 Identities=11% Similarity=0.061 Sum_probs=120.5
Q ss_pred ccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhC-CCCccchhhHHHHHHHhhcCCc--
Q 009568 242 VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDD-- 318 (532)
Q Consensus 242 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~-- 318 (532)
....+-.|+.++.++|+.-+.....+|..+-..-..... .+...+-..+..++. .....-..+.+.++|.+..|..
T Consensus 160 d~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~-~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~P 238 (449)
T 2npp_B 160 DQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRA-YIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALP 238 (449)
T ss_dssp CHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHH-HHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSS
T ss_pred CHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCC
Confidence 356778899999999999988888888776544333322 222233334455542 2344556789999999998753
Q ss_pred ---chhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHH
Q 009568 319 ---FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAI 395 (532)
Q Consensus 319 ---~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 395 (532)
+....+ ...|+.+.+...-......-..++..+...++..... ++..|+..--..+..-...-+.-|
T Consensus 239 LKeehk~fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~el 308 (449)
T 2npp_B 239 LKEEHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLNEL 308 (449)
T ss_dssp CCHHHHHHH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTCCSSCHHHHHHHHHHH
T ss_pred CcHHHHHHH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhCCCCCchHHHHHHHHH
Confidence 222111 2344455554422333344555555555544432222 222333222222322222223344
Q ss_pred HHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHH--HHhhhhhhhccCCCccchHHHHHHHHhccHHH
Q 009568 396 SNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENI--LKVGEAEKNMGTATADVNQYAQLVEEAEGLEK 473 (532)
Q Consensus 396 ~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 473 (532)
..+....++.....+.. .+...+..++++++-+|.+.|+..+.|= +..-... .......+ +..
T Consensus 309 eeile~~~~~ef~~i~~-~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~n---------~~~IlPii-----~p~ 373 (449)
T 2npp_B 309 EEILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDN---------AAKILPIM-----FPS 373 (449)
T ss_dssp HHHHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTT---------HHHHHHHH-----HHH
T ss_pred HHHHHhCCHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHhc---------hhhhHHhh-----HHH
Confidence 55555555555444222 3677778888898888888887544221 1111110 00011111 233
Q ss_pred HH-HHhcCCCHHHHHHHHHHHHHhC
Q 009568 474 IE-NLQSHDNNEIYEKAVKILETYW 497 (532)
Q Consensus 474 l~-~L~~~~~~~v~~~a~~il~~~~ 497 (532)
|. ....|=|..|+..|..++.-+-
T Consensus 374 L~~~s~~HWn~~V~~la~~vlk~l~ 398 (449)
T 2npp_B 374 LYRNSKTHWNKTIHGLIYNALKLFM 398 (449)
T ss_dssp HTSCTTCCSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 32 2356777778888877776443
No 170
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=50.19 E-value=39 Score=32.53 Aligned_cols=131 Identities=12% Similarity=0.061 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhh-
Q 009568 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN- 212 (532)
Q Consensus 135 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~- 212 (532)
++-++.+|.-++...+.. +.+..++. .+.+..+..+-.++++++|+.......+..+........++..+.
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 666777777776632211 22333332 344566888899999999997765533333322222445555442
Q ss_pred ------hhhhhHHHHHHHHHhhhccCCC--CCCCcccccchHHHHHHhhc---------CCCHHHHHHHHHHHHHhccCC
Q 009568 213 ------ERAKLSMLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQLVH---------SNDEEVLTDACWALSYLSDGT 275 (532)
Q Consensus 213 ------~~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~l~~L~~lL~---------~~d~~v~~~a~~~L~~l~~~~ 275 (532)
...+..++..++..+.|++... .... ..+++.+..++. ..|++....++-+|++|....
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~----~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 2235667777778888887642 1111 234455555554 358899999999999998543
Q ss_pred h
Q 009568 276 N 276 (532)
Q Consensus 276 ~ 276 (532)
+
T Consensus 392 ~ 392 (425)
T 3pst_A 392 P 392 (425)
T ss_dssp H
T ss_pred H
Confidence 3
No 171
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=49.63 E-value=3.2e+02 Score=30.67 Aligned_cols=131 Identities=11% Similarity=0.080 Sum_probs=68.1
Q ss_pred cchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-C--CHHHHHHHHH------cC
Q 009568 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-G--NRDQIQAVID------AG 371 (532)
Q Consensus 301 ~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~--~~~~~~~l~~------~~ 371 (532)
.+...-++.|.++....+ +..++.++=++-.+.+...++.|-.++.+-.. | ........+. ..
T Consensus 325 ~i~eAwlK~I~~~~~~~~--------hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL~~ 396 (1323)
T 3s4w_B 325 TISEAWFKAIERIESAAE--------HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVLKD 396 (1323)
T ss_dssp HHHHHHHHHHHHGGGSTT--------CCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcccc--------cchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHHHH
Confidence 344444555555443222 24455554433222144567888888877655 2 2222222221 34
Q ss_pred CHHHHHH----HHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568 372 LVGPLVN----LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 444 (532)
Q Consensus 372 ~i~~L~~----ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~ 444 (532)
.++.++. ++.+.++.++.-+...-..+....+.-. +..++..|+.-.-++...-+..++++|..+...
T Consensus 397 ~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~-----qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~ 468 (1323)
T 3s4w_B 397 ICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYC-----QQEVVGALVTHVCSGTEAEVDTALDVLLELIVL 468 (1323)
T ss_dssp SHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHH-----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchh-----HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhc
Confidence 5666654 4456688888777776666655443221 223455555544445555556677777766643
No 172
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=48.75 E-value=1.3e+02 Score=26.01 Aligned_cols=138 Identities=14% Similarity=0.089 Sum_probs=78.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcc-CChhHHHHHHHhCchHHHHHhhC-CCCccchhhH-HHHHHHhhcCCcchhHHH
Q 009568 248 ALAQLVHSNDEEVLTDACWALSYLSD-GTNDKIQAVIEAGVCPRLVELLG-HPSPSVLIPA-LRTVGNIVTGDDFQTQCI 324 (532)
Q Consensus 248 ~L~~lL~~~d~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a-l~~L~nl~~~~~~~~~~~ 324 (532)
.+..+..++..+.+..|+..+..... ..+ ..++.+-.++. .+++.+.-.. ..+++.+....+.
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~---------~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~----- 130 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHINE---------THIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE----- 130 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGCCG---------GGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG-----
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH-----
Confidence 44555566666676666666653321 111 12233333443 3455554433 2455555543331
Q ss_pred hhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC
Q 009568 325 ITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGT 403 (532)
Q Consensus 325 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 403 (532)
...+.+...+.++ +.-+++.|+-.+..... .+++. .++.+...+.+++.-|++.+.|+|..+... .
T Consensus 131 ---~~~~~l~~W~~s~-~~w~rR~ai~~~l~~~~~~d~~~--------~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~-~ 197 (232)
T 3jxy_A 131 ---LISAYIPKWIASD-NIWLQRAAILFQLKYKQKMDEEL--------LFWIIGQLHSSKEFFIQKAIGWVLREYAKT-N 197 (232)
T ss_dssp ---GGGGTHHHHHHSS-CHHHHHHHHHTTTTCGGGCCHHH--------HHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-C
T ss_pred ---HHHHHHHHHhcCC-chHHHHHHHHHHHHHHhCCCHHH--------HHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-C
Confidence 2456788888888 88888877655432221 22221 234455667788899999999999999887 5
Q ss_pred HHHHHHHHH
Q 009568 404 HEQIKYLVR 412 (532)
Q Consensus 404 ~~~~~~l~~ 412 (532)
++....+++
T Consensus 198 p~~v~~fl~ 206 (232)
T 3jxy_A 198 PDVVWEYVQ 206 (232)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444444
No 173
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=45.85 E-value=28 Score=32.73 Aligned_cols=102 Identities=9% Similarity=0.067 Sum_probs=61.8
Q ss_pred CCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCC-------CchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009568 297 HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS-------HKKSIKKEACWTISNITAGNRDQIQAVID 369 (532)
Q Consensus 297 ~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 369 (532)
...+..+..++++++|+........+.+.+......+...+... .+..++..++..+-|++....... .+
T Consensus 210 ~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~---~~ 286 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SD 286 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC---SC
T ss_pred CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---ch
Confidence 44567888899999999986653333333222233444443211 145678888888889886211100 00
Q ss_pred cCCHHHHHHHHh---------cCchhHHHHHHHHHHHhhcC
Q 009568 370 AGLVGPLVNLLQ---------NAEFDIKKEAAWAISNATSG 401 (532)
Q Consensus 370 ~~~i~~L~~ll~---------~~~~~v~~~a~~aL~nl~~~ 401 (532)
..+...+..++. ..+.+....++-||++++..
T Consensus 287 ~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 287 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 223455666665 24788889999999999863
No 174
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=45.64 E-value=37 Score=31.94 Aligned_cols=130 Identities=12% Similarity=0.064 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhh-
Q 009568 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN- 212 (532)
Q Consensus 135 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~- 212 (532)
+.-++.+|.-++...+ . .+.+..++. .+.+..+..+-.++++++|+.......+..+........++..+.
T Consensus 180 ~FP~LDLLRl~v~~~~-~------~~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLP-Y------SSDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCS-C------GGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCC-h------HHHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 6667777777766322 1 123333443 344566888899999999997765533333322111233444331
Q ss_pred ------hhhhhHHHHHHHHHhhhccCCC--CCCCcccccchHHHHHHhhc---------CCCHHHHHHHHHHHHHhccCC
Q 009568 213 ------ERAKLSMLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQLVH---------SNDEEVLTDACWALSYLSDGT 275 (532)
Q Consensus 213 ------~~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~l~~L~~lL~---------~~d~~v~~~a~~~L~~l~~~~ 275 (532)
...+..++..++..+.|++... .... ...++.+..++. ..|++....++-++++|....
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~----~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 2335667777778888887542 1111 234455555554 358899999999999998543
No 175
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=44.53 E-value=3.8e+02 Score=30.08 Aligned_cols=101 Identities=11% Similarity=0.004 Sum_probs=57.9
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 009568 334 LGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE 413 (532)
Q Consensus 334 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 413 (532)
-.++.+. ++.++.-+...-..+....... ....++..|+..+-++...-...|+.+|..++.. .+.......
T Consensus 406 ~~Ll~S~-~~~v~~Fg~~lY~~lF~~fd~~----~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~-~~~~l~~~a-- 477 (1323)
T 3s4w_B 406 QTLFHSQ-DQRIILFGSLLYKYAFKFFDTY----CQQEVVGALVTHVCSGTEAEVDTALDVLLELIVL-NASAMRLNA-- 477 (1323)
T ss_dssp HHHHTSS-SHHHHHHHHHHHHHHHHSSCHH----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-CHHHHHHTH--
T ss_pred HHHHhCC-CHHHHHHHHHHHHHHHHhccch----hHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhc-CHHHHhHHH--
Confidence 3455666 8888888887777766543222 1223456666666666544455688888888764 333222211
Q ss_pred CChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 009568 414 GCIKPLCDLFVCPDPRIVTVCLEGLENIL 442 (532)
Q Consensus 414 ~~l~~L~~lL~~~d~~v~~~al~~L~~l~ 442 (532)
-.+..+++.++.-+..=+..+...|..+.
T Consensus 478 ~~l~giLD~l~~l~~~QiRklf~iL~~la 506 (1323)
T 3s4w_B 478 AFVKGILDYLENMSPQQIRKIFCILSTLA 506 (1323)
T ss_dssp HHHHGGGGGGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence 13556666666655544445566666654
No 176
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=43.15 E-value=49 Score=29.36 Aligned_cols=100 Identities=13% Similarity=0.084 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhh-------hhhhhHHHHHHHHHhhhccCCC-C-CCCccc
Q 009568 171 SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-------ERAKLSMLRNATWTLSNFCRGK-P-QPPFDQ 241 (532)
Q Consensus 171 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~-------~~~~~~~~~~a~~~L~~L~~~~-~-~~~~~~ 241 (532)
+.++..+-.++++++|+..+....+..+........++..+. ...+..++-.++..+.|++-.. . ...
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~--- 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD--- 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSC---
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccch---
Confidence 456788899999999998776633555543322344444431 1236667777788888887542 1 111
Q ss_pred ccchHHHHHHhhc---------CCCHHHHHHHHHHHHHhccC
Q 009568 242 VRPALPALAQLVH---------SNDEEVLTDACWALSYLSDG 274 (532)
Q Consensus 242 ~~~~l~~L~~lL~---------~~d~~v~~~a~~~L~~l~~~ 274 (532)
......+..++. ..|++....++-+++++...
T Consensus 178 -~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 178 -LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp -TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 223334444443 23788999999999998753
No 177
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=43.10 E-value=30 Score=25.78 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=33.2
Q ss_pred HHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHHHHhCCC
Q 009568 462 AQLVEEAEGLEKIENLQSH-DNNEIYEKAVKILETYWLE 499 (532)
Q Consensus 462 ~~~~~~~g~~~~l~~L~~~-~~~~v~~~a~~il~~~~~~ 499 (532)
...+.+.+.-..+..|..| ++++|...|..++..+-..
T Consensus 47 ~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~WK~~ 85 (103)
T 1wjt_A 47 IQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRL 85 (103)
T ss_dssp HHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Confidence 6678889999999999876 9999999999999987654
No 178
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=42.50 E-value=1.8e+02 Score=25.67 Aligned_cols=135 Identities=10% Similarity=0.006 Sum_probs=77.4
Q ss_pred chhhHHHHHHHhhcCCcchhHHHhhcCchHH-HHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH
Q 009568 302 VLIPALRTVGNIVTGDDFQTQCIITYGALPY-LLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLL 380 (532)
Q Consensus 302 v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~-L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 380 (532)
.+.+++..+.-++...+.. +.+.. +-..+.+. .+..+--++++++|+..+..-..+.+.+......++..+
T Consensus 70 ~~fP~lDllRl~~~~~~~~-------~~l~~~l~~~~~~~-~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i 141 (253)
T 3gae_A 70 IKTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNK-NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETI 141 (253)
T ss_dssp CCHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHS
T ss_pred ccchHHHHHHHHHcCCchH-------HHHHHHHHHhcCCC-chhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHH
Confidence 5777888888777655422 22222 33334444 778999999999999886441222332222233334333
Q ss_pred h--------cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcC---------CCCHHHHHHHHHHHHHHHH
Q 009568 381 Q--------NAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV---------CPDPRIVTVCLEGLENILK 443 (532)
Q Consensus 381 ~--------~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~---------~~d~~v~~~al~~L~~l~~ 443 (532)
. ..+..++..++..+.|++........ +......+.+++. ..|++....++-++.+++.
T Consensus 142 ~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~----~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 142 DTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS----DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp CSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS----CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc----hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 1 12557888888889998762100000 0111223333332 2378899999999999997
Q ss_pred hhhhh
Q 009568 444 VGEAE 448 (532)
Q Consensus 444 ~~~~~ 448 (532)
.++..
T Consensus 218 ~~~~~ 222 (253)
T 3gae_A 218 VEPTL 222 (253)
T ss_dssp HSGGG
T ss_pred CcHHH
Confidence 65443
No 179
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=41.46 E-value=85 Score=25.03 Aligned_cols=75 Identities=12% Similarity=0.185 Sum_probs=55.0
Q ss_pred HHHHHHhCchHHHHHhhCC------CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCC-chhHHHHHHH
Q 009568 279 IQAVIEAGVCPRLVELLGH------PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACW 351 (532)
Q Consensus 279 ~~~~~~~~~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~ 351 (532)
...+++.|++..+-..|.. ++..++...+.+|.++- -..+.+.++|+-..++.+-+++. .+..++.|-.
T Consensus 54 ~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~~ 129 (145)
T 2xpp_A 54 QESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK----IHKEHLVTSGVGKIVYFYSINPKESKEVRASAKA 129 (145)
T ss_dssp HHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC----CCHHHhhcCCCCcchhhhhcCCccCHHHHHHHHH
Confidence 4667888999999998864 45678888999988873 34567778888777777766552 4577877777
Q ss_pred HHHHHh
Q 009568 352 TISNIT 357 (532)
Q Consensus 352 ~L~nl~ 357 (532)
.+...+
T Consensus 130 Li~~Ws 135 (145)
T 2xpp_A 130 LVQKWT 135 (145)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 180
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=37.59 E-value=89 Score=25.65 Aligned_cols=77 Identities=10% Similarity=0.088 Sum_probs=57.5
Q ss_pred HHHHHHHHcCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHh
Q 009568 405 EQIKYLVREGCIKPLCDLFVC------PDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ 478 (532)
Q Consensus 405 ~~~~~l~~~~~l~~L~~lL~~------~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~ 478 (532)
.....|++.|++..+-..|.- +...++...+.+|..+= . . ...+.++|.-..+..+.
T Consensus 67 ~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lP-I----~------------~e~Lk~SglGkvV~~l~ 129 (170)
T 3nfq_A 67 NLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLP-V----K------------TEHLKESGLGRVVIFYT 129 (170)
T ss_dssp GGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC-C----C------------HHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCC-C----C------------HHHHhhCCCCceeeehh
Confidence 345667788999999888863 45678888888877651 1 0 44577888888888887
Q ss_pred cC--CCHHHHHHHHHHHHHhCC
Q 009568 479 SH--DNNEIYEKAVKILETYWL 498 (532)
Q Consensus 479 ~~--~~~~v~~~a~~il~~~~~ 498 (532)
.| +.++++..|..+++++-.
T Consensus 130 k~~~et~~nkrla~~Li~~WsR 151 (170)
T 3nfq_A 130 KSKRVEAQLARLAEKLIAEWTR 151 (170)
T ss_dssp HCTTSCHHHHHHHHHHHHHHTC
T ss_pred cCCcccHHHHHHHHHHHHHHHH
Confidence 66 457789999999999844
No 181
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=33.69 E-value=1.6e+02 Score=24.17 Aligned_cols=77 Identities=10% Similarity=0.101 Sum_probs=56.9
Q ss_pred HHHHHHHhCchHHHHHhhCC------CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCC-chhHHHHHH
Q 009568 278 KIQAVIEAGVCPRLVELLGH------PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEAC 350 (532)
Q Consensus 278 ~~~~~~~~~~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~ 350 (532)
....+++.|++..+...|.. ++..++...+.+|.++- -..+.+..+|+-..++-+-+++. .+..++-|-
T Consensus 68 L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvV~~l~k~~~et~~nkrla~ 143 (170)
T 3nfq_A 68 LADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLP----VKTEHLKESGLGRVVIFYTKSKRVEAQLARLAE 143 (170)
T ss_dssp GHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHSHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCC----CCHHHHhhCCCCceeeehhcCCcccHHHHHHHH
Confidence 44668888999999998864 45578888898888774 34566778887777776665541 467888888
Q ss_pred HHHHHHhc
Q 009568 351 WTISNITA 358 (532)
Q Consensus 351 ~~L~nl~~ 358 (532)
..+...+.
T Consensus 144 ~Li~~WsR 151 (170)
T 3nfq_A 144 KLIAEWTR 151 (170)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHH
Confidence 88888765
No 182
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B
Probab=33.42 E-value=8.3 Score=35.76 Aligned_cols=44 Identities=25% Similarity=0.367 Sum_probs=27.4
Q ss_pred chHHHhhhcCCCCCchHHhhhhhHHHHHHHHHhhHHHHHhhhhhc
Q 009568 8 RAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREG 52 (532)
Q Consensus 8 ~~~~~~~~~k~~~~~~~~~~~r~~~~~~~Rk~~r~~~~~~~r~~~ 52 (532)
...+|...||+.....+ ..+|++...+..|++|.+.+...|+..
T Consensus 28 a~HPR~sqyK~k~~~~~-Q~~RR~~~Le~QK~kR~d~~~haR~La 71 (365)
T 3gjx_B 28 APHPRLSQYKSKYSSLE-QSERRRRLLELQKSKRLDYVNHARRLA 71 (365)
T ss_dssp SCCGGGCC---CTTCCS-CCHHHHHHHHHTCCCCSCHHHHHHHHH
T ss_pred CCCcchhhcccccchhh-HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34579999998433333 334445566777888999999888763
No 183
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=31.45 E-value=2.5e+02 Score=24.02 Aligned_cols=145 Identities=10% Similarity=-0.039 Sum_probs=89.5
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHH
Q 009568 120 PRFVEFLMREDYPQLQFEAAWALTNIASG-TSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDL 197 (532)
Q Consensus 120 ~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~ 197 (532)
..+..+..++. .+.+..|+.++...... .++. ++.+-.++.. .+..+....+.+++.++...+..
T Consensus 58 ~~~~~L~~s~~-~E~r~la~~~l~~~~~~~~~~~---------l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~--- 124 (220)
T 2b6c_A 58 QEIEAYYQKTE-REYQYVAIDLALQNVQRFSLEE---------VVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE--- 124 (220)
T ss_dssp HHHHHHHTSSS-HHHHHHHHHHHHHTGGGCCHHH---------HHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG---
T ss_pred HHHHHHHcCch-hHHHHHHHHHHHHHHhhCCHHH---------HHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH---
Confidence 34455666666 88999999888876532 2211 2222334433 56777777666677765433321
Q ss_pred HHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChh
Q 009568 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND 277 (532)
Q Consensus 198 ~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~ 277 (532)
..+.+...+ .+++.-+++.++-++..... .......++.+..++.+++.-|+..+.|+|..++...++
T Consensus 125 -----~~~~i~~W~-~s~~~w~rR~ai~~~l~~~~------~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~ 192 (220)
T 2b6c_A 125 -----LPTIFALFY-GAENFWNRRVALNLQLMLKE------KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQ 192 (220)
T ss_dssp -----HHHHHHHHT-TCSSHHHHHHHHHTTTTCGG------GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHH
T ss_pred -----HHHHHHHHH-cCCCHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHH
Confidence 123344555 77788888888765532211 112244566666688888899999999999999988887
Q ss_pred HHHHHHHhCchH
Q 009568 278 KIQAVIEAGVCP 289 (532)
Q Consensus 278 ~~~~~~~~~~l~ 289 (532)
....++...-++
T Consensus 193 ~v~~fl~~~~l~ 204 (220)
T 2b6c_A 193 WVEELMKELVLS 204 (220)
T ss_dssp HHHHHHHHSCCC
T ss_pred HHHHHHhhccCC
Confidence 666555433333
No 184
>2g7o_A Protein TRAM; four helix bundle, tetramer, DNA binding protein; 1.40A {Escherichia coli} SCOP: a.241.1.1 PDB: 3d8a_A 2g9e_A
Probab=30.53 E-value=45 Score=22.62 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhCCCCcc
Q 009568 484 EIYEKAVKILETYWLEEDD 502 (532)
Q Consensus 484 ~v~~~a~~il~~~~~~~~~ 502 (532)
+|++.+...++.||+++++
T Consensus 51 ~Ir~~~~e~~~~FFpe~~~ 69 (70)
T 2g7o_A 51 DIREKVSSEMERFFPKNDD 69 (70)
T ss_dssp HHHHHHHHHHHHHSCSCTT
T ss_pred HHHHHHHHHHHHhCccccC
Confidence 6778899999999987654
No 185
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=29.56 E-value=2.7e+02 Score=23.96 Aligned_cols=141 Identities=13% Similarity=0.087 Sum_probs=85.3
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHH-HHHHHhhCCCchhHHH
Q 009568 121 RFVEFLMREDYPQLQFEAAWALTNIAS-GTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAV-WALGNVAGDSPRCRDL 197 (532)
Q Consensus 121 ~Lv~lL~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~-~~L~nl~~~~~~~~~~ 197 (532)
.+-.+..++. .+.+..|+..+..... .+++. ++.+-.++.. .+..+....+ .+++.+....+.
T Consensus 65 ~~~~L~~~~~-~E~r~~ai~~l~~~~k~~~~~~---------l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~---- 130 (232)
T 3jxy_A 65 IIRELWDLPE-REFQAAALDIMQKYKKHINETH---------IPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE---- 130 (232)
T ss_dssp HHHHHHTSSB-HHHHHHHHHHHHHTGGGCCGGG---------HHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG----
T ss_pred HHHHHhcCcH-HHHHHHHHHHHHHHHHhCCHHH---------HHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH----
Confidence 4455666665 7889888887764422 12222 2333344433 5666666543 455555433332
Q ss_pred HHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChh
Q 009568 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND 277 (532)
Q Consensus 198 ~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~ 277 (532)
...+.+...+ .++++-+++.++-.+..... .......++.+..++.+++.-|+..+.|+|..++...++
T Consensus 131 ----~~~~~l~~W~-~s~~~w~rR~ai~~~l~~~~------~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~ 199 (232)
T 3jxy_A 131 ----LISAYIPKWI-ASDNIWLQRAAILFQLKYKQ------KMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPD 199 (232)
T ss_dssp ----GGGGTHHHHH-HSSCHHHHHHHHHTTTTCGG------GCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHH
T ss_pred ----HHHHHHHHHh-cCCchHHHHHHHHHHHHHHh------CCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHH
Confidence 1234455555 77788888887765432211 111234566677788888999999999999999988887
Q ss_pred HHHHHHHhC
Q 009568 278 KIQAVIEAG 286 (532)
Q Consensus 278 ~~~~~~~~~ 286 (532)
....+++..
T Consensus 200 ~v~~fl~~~ 208 (232)
T 3jxy_A 200 VVWEYVQNN 208 (232)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHC
Confidence 766666543
No 186
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=27.98 E-value=2.1e+02 Score=22.64 Aligned_cols=88 Identities=7% Similarity=-0.043 Sum_probs=56.2
Q ss_pred HHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCch
Q 009568 306 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEF 385 (532)
Q Consensus 306 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 385 (532)
.+..|..+|..+-.... .++..+...+... .+.-+-.++.++-.++..........+..++.+.+.......++
T Consensus 26 ~I~~LT~~a~~~~~~a~-----~Iv~~i~~~i~k~-~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~ 99 (144)
T 1sz9_A 26 IITTLTKLAEENISCAQ-----YFVDAIESRIEKC-MPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDN 99 (144)
T ss_dssp HHHHHHHHHHHTGGGHH-----HHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHhccC-CHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCH
Confidence 34445555544433333 3445666666666 78888888888888886222223456667777888787777778
Q ss_pred hHHHHHHHHHHHhh
Q 009568 386 DIKKEAAWAISNAT 399 (532)
Q Consensus 386 ~v~~~a~~aL~nl~ 399 (532)
.+|......+.-.-
T Consensus 100 ~~r~k~~rL~~~W~ 113 (144)
T 1sz9_A 100 TTRTKLINMFKLWL 113 (144)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 88877777665554
No 187
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=25.07 E-value=1.1e+02 Score=24.50 Aligned_cols=72 Identities=13% Similarity=0.012 Sum_probs=47.7
Q ss_pred HHHHHHHHhc-CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChH-HHHhhcCC---CCHHHHHHHHHHHHHHHHh
Q 009568 373 VGPLVNLLQN-AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIK-PLCDLFVC---PDPRIVTVCLEGLENILKV 444 (532)
Q Consensus 373 i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~-~L~~lL~~---~d~~v~~~al~~L~~l~~~ 444 (532)
+..|..-+.. .++.++..|+..|-.++.++...+-..+.....+. .|+.++.. ....|+..++..+......
T Consensus 55 ~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 55 VKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 4455566664 47778888888888888877766665555444554 35666653 2346888888887777643
No 188
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=23.27 E-value=69 Score=19.72 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=14.1
Q ss_pred HHhhhhhHHHHHHHHHhhH
Q 009568 24 EGRRRREDNMVEIRKNKRE 42 (532)
Q Consensus 24 ~~~~~r~~~~~~~Rk~~r~ 42 (532)
+.|++.++....+||.++.
T Consensus 11 ~~Rkk~eeler~lrk~kk~ 29 (50)
T 1a92_A 11 SGRKKLEELERDLRKLKKK 29 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4577888888888877663
No 189
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=23.18 E-value=3.4e+02 Score=22.83 Aligned_cols=128 Identities=13% Similarity=0.088 Sum_probs=75.9
Q ss_pred ChHHHHHHhhhh-----hhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCC---CHHHHHHHHHHHHHhccC
Q 009568 203 ALIPLLAQLNER-----AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN---DEEVLTDACWALSYLSDG 274 (532)
Q Consensus 203 ~l~~L~~ll~~~-----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~---d~~v~~~a~~~L~~l~~~ 274 (532)
.+|.++..+... .+.......+.....|..++.-.-......++|.++.++-.. ...++..|+..+..++..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 456666555321 256677777777888888765555556678888877776432 237999999999998854
Q ss_pred ChhHHHHHHHhCchHHHHHhhCCCC--ccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhc
Q 009568 275 TNDKIQAVIEAGVCPRLVELLGHPS--PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT 338 (532)
Q Consensus 275 ~~~~~~~~~~~~~l~~L~~lL~~~~--~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~ 338 (532)
...... -+...++..+...+.+++ .....-|+..|..+.. ..+..-++|.+-...+
T Consensus 121 ~~~~y~-~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~-------~~vr~~llP~l~~~~~ 178 (196)
T 4atg_A 121 YSRSYK-TLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK-------NVVNTVIREHAEEYKR 178 (196)
T ss_dssp HTTTST-THHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH-------HHHHTHHHHHHHHHHH
T ss_pred hCccCc-hHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH-------HHHHHhhhcCHHHHHH
Confidence 222111 223456667777766654 3344445555555442 2333344566655554
No 190
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=21.83 E-value=2.6e+02 Score=23.50 Aligned_cols=112 Identities=14% Similarity=0.101 Sum_probs=63.8
Q ss_pred CChHHHHHhhCC------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhh--hhHHHHHHHHHhhhcc
Q 009568 160 GAVPIFVKLLAS------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA--KLSMLRNATWTLSNFC 231 (532)
Q Consensus 160 g~i~~L~~lL~~------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~--~~~~~~~a~~~L~~L~ 231 (532)
..+|.++.++.+ .+.......+.....+.....-.-+. .-...+++++.++-... ...++..|+..++.+|
T Consensus 40 ~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lep-YlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~ 118 (196)
T 4atg_A 40 QLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDP-YLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIY 118 (196)
T ss_dssp TTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGG-GHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHH-HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence 356777766543 35555555555555554322111000 01124666776663211 1279999999999999
Q ss_pred CCCCCCCcccccchHHHHHHhhcCC--CHHHHHHHHHHHHHhc
Q 009568 232 RGKPQPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLS 272 (532)
Q Consensus 232 ~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~l~ 272 (532)
+............++..+.+.+.++ ......-|++.|..+.
T Consensus 119 ~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 119 DTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred HHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 8754333344456667777776554 4556677777777765
No 191
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=21.41 E-value=3e+02 Score=21.58 Aligned_cols=101 Identities=10% Similarity=0.205 Sum_probs=60.1
Q ss_pred HHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCC--CHHHHHHHHHHHHHHHHhhhhhhhccC
Q 009568 376 LVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP--DPRIVTVCLEGLENILKVGEAEKNMGT 453 (532)
Q Consensus 376 L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~--d~~v~~~al~~L~~l~~~~~~~~~~~~ 453 (532)
.+.-|......++..+.|++.+.-. ... ++..+.+.+... ++.-+...+-.+..++..+...
T Consensus 11 kL~~L~~sq~sIq~~s~W~l~h~~~------a~~-----iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k----- 74 (142)
T 2km4_A 11 KLNTLEDSQESISSASKWLLLQYRD------APK-----VAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQ----- 74 (142)
T ss_dssp HHHTCCSCHHHHHHHHHHHHTCGGG------HHH-----HHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGG-----
T ss_pred HHHhccccHHHHHHHHHHHHHhhhh------HHH-----HHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhc-----
Confidence 3344555566788888888866532 111 344455555543 5555666666677777655321
Q ss_pred CCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009568 454 ATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETY 496 (532)
Q Consensus 454 ~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~ 496 (532)
....|...|. ....+.+..+....+++++.+...+++-+
T Consensus 75 ---~~~~f~~~F~-~~L~~~~~~~~~~~~~~~~~kv~rvl~iW 113 (142)
T 2km4_A 75 ---KIIQFQDSFG-KVAAEVLGRINQEFPRDLKKKLSRVVNIL 113 (142)
T ss_dssp ---TCCHHHHHHH-HTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ---CchHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1234666665 44456666655556888888888888654
No 192
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=20.86 E-value=1.2e+02 Score=24.28 Aligned_cols=72 Identities=11% Similarity=0.167 Sum_probs=46.1
Q ss_pred ChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHH-HHHHHhc---CCCHHHHHHH
Q 009568 415 CIKPLCDLFVC-PDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLE-KIENLQS---HDNNEIYEKA 489 (532)
Q Consensus 415 ~l~~L~~lL~~-~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~l~~L~~---~~~~~v~~~a 489 (532)
++..|..-|.. .++.+...||..|..+++.+... |-..+....+++ .|..+.. +....|++++
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~------------fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~ki 121 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPS------------FQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRI 121 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHH------------HHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHH------------HHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHH
Confidence 45566666664 57778888999888888765432 344444334443 2444432 3456899999
Q ss_pred HHHHHHhCC
Q 009568 490 VKILETYWL 498 (532)
Q Consensus 490 ~~il~~~~~ 498 (532)
..+|..+-.
T Consensus 122 l~li~~Wa~ 130 (152)
T 3rru_A 122 LNFIKTWSQ 130 (152)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999998753
No 193
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=20.54 E-value=1.7e+02 Score=26.81 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=33.1
Q ss_pred HHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009568 462 AQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 498 (532)
Q Consensus 462 ~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 498 (532)
...+.+.+.-..+..|..|++++|...|..++..+-.
T Consensus 38 ~~~L~~T~IG~~Vn~lrkh~~~~v~~~Ak~Li~~WK~ 74 (309)
T 1pqv_S 38 EKLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD 74 (309)
T ss_pred HHHHHhCChhHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 6678888989999999999999999999999998755
Done!