Query 009569
Match_columns 532
No_of_seqs 833 out of 4119
Neff 10.0
Searched_HMMs 46136
Date Thu Mar 28 14:42:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009569.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009569hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 1.3E-77 2.8E-82 550.0 37.1 473 48-523 2-476 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 1.3E-57 2.9E-62 406.4 28.9 448 61-525 5-475 (508)
3 KOG0273 Beta-transducin family 100.0 1.1E-42 2.5E-47 325.3 25.0 241 272-522 235-487 (524)
4 KOG0271 Notchless-like WD40 re 100.0 6.7E-42 1.4E-46 312.2 26.4 266 248-521 91-443 (480)
5 KOG0272 U4/U6 small nuclear ri 100.0 2.3E-41 5.1E-46 312.7 19.3 272 237-515 181-458 (459)
6 KOG0271 Notchless-like WD40 re 100.0 3.4E-40 7.5E-45 301.0 23.6 265 237-515 129-479 (480)
7 KOG0272 U4/U6 small nuclear ri 100.0 3.9E-39 8.5E-44 297.9 19.1 244 270-520 173-421 (459)
8 KOG0279 G protein beta subunit 100.0 4.8E-37 1E-41 270.1 28.7 272 237-517 30-313 (315)
9 KOG0279 G protein beta subunit 100.0 8.1E-36 1.7E-40 262.4 29.0 252 264-521 7-266 (315)
10 KOG0263 Transcription initiati 100.0 4.6E-37 9.9E-42 305.4 23.9 259 257-519 363-651 (707)
11 KOG0316 Conserved WD40 repeat- 100.0 1.8E-36 3.9E-41 260.0 23.7 255 259-520 4-260 (307)
12 KOG0315 G-protein beta subunit 100.0 9E-36 2E-40 257.8 28.1 273 238-523 13-294 (311)
13 KOG0286 G-protein beta subunit 100.0 1.4E-35 3.1E-40 262.3 28.9 267 237-515 69-343 (343)
14 KOG0295 WD40 repeat-containing 100.0 1.2E-36 2.5E-41 276.7 18.9 262 242-516 127-405 (406)
15 KOG0286 G-protein beta subunit 100.0 4.9E-34 1.1E-38 252.6 29.6 255 263-523 46-309 (343)
16 KOG0265 U5 snRNP-specific prot 100.0 1.1E-34 2.4E-39 257.6 23.5 253 262-518 37-297 (338)
17 KOG0282 mRNA splicing factor [ 100.0 1.9E-35 4.2E-40 278.0 15.9 261 257-521 199-466 (503)
18 KOG0285 Pleiotropic regulator 100.0 4.8E-34 1E-38 258.8 22.6 257 256-521 135-393 (460)
19 KOG0283 WD40 repeat-containing 100.0 9.5E-34 2.1E-38 284.2 25.3 251 264-519 258-578 (712)
20 KOG0266 WD40 repeat-containing 100.0 6.6E-33 1.4E-37 282.9 31.4 254 265-520 151-412 (456)
21 KOG0318 WD40 repeat stress pro 100.0 2.2E-32 4.9E-37 259.6 30.6 275 238-522 163-565 (603)
22 KOG0263 Transcription initiati 100.0 2.8E-33 6E-38 278.5 24.5 208 263-473 442-651 (707)
23 KOG0284 Polyadenylation factor 100.0 3.7E-34 8.1E-39 263.8 15.5 268 236-518 109-381 (464)
24 KOG0295 WD40 repeat-containing 100.0 8.5E-33 1.9E-37 251.5 23.3 255 261-522 97-369 (406)
25 KOG0291 WD40-repeat-containing 100.0 5.2E-32 1.1E-36 266.9 30.0 254 263-521 341-616 (893)
26 KOG0266 WD40 repeat-containing 100.0 8.7E-32 1.9E-36 274.7 30.3 248 264-517 195-454 (456)
27 KOG0291 WD40-repeat-containing 100.0 3.2E-31 6.8E-36 261.4 30.6 280 234-520 268-553 (893)
28 KOG0296 Angio-associated migra 100.0 3.6E-31 7.7E-36 241.2 27.6 265 238-517 79-398 (399)
29 KOG0273 Beta-transducin family 100.0 2.3E-31 5E-36 249.7 26.8 259 250-517 254-523 (524)
30 KOG0645 WD40 repeat protein [G 100.0 1.8E-30 4E-35 227.7 30.4 246 263-518 5-262 (312)
31 KOG0315 G-protein beta subunit 100.0 4.4E-31 9.5E-36 228.8 24.6 227 285-519 11-247 (311)
32 cd00200 WD40 WD40 domain, foun 100.0 7.4E-30 1.6E-34 245.1 33.1 249 266-521 3-253 (289)
33 KOG0284 Polyadenylation factor 100.0 5.1E-32 1.1E-36 249.8 16.6 241 270-517 94-337 (464)
34 KOG0276 Vesicle coat complex C 100.0 5.2E-31 1.1E-35 254.8 23.8 249 266-521 7-261 (794)
35 KOG0645 WD40 repeat protein [G 100.0 6.8E-30 1.5E-34 224.2 28.1 269 237-517 29-311 (312)
36 KOG0318 WD40 repeat stress pro 100.0 3E-30 6.5E-35 245.2 27.9 281 226-517 192-602 (603)
37 KOG0265 U5 snRNP-specific prot 100.0 2.5E-30 5.4E-35 230.0 24.4 266 235-514 59-335 (338)
38 cd00200 WD40 WD40 domain, foun 100.0 3.1E-29 6.7E-34 240.8 33.0 264 238-515 24-289 (289)
39 KOG0319 WD40-repeat-containing 100.0 1.1E-30 2.4E-35 257.4 23.0 253 262-518 355-620 (775)
40 KOG0313 Microtubule binding pr 100.0 3.9E-30 8.5E-35 235.4 24.2 270 235-518 115-419 (423)
41 KOG0293 WD40 repeat-containing 100.0 7.3E-30 1.6E-34 235.7 26.1 251 262-519 259-515 (519)
42 KOG0282 mRNA splicing factor [ 100.0 4.2E-31 9.1E-36 248.9 17.7 265 237-515 229-503 (503)
43 KOG0285 Pleiotropic regulator 100.0 4.7E-30 1E-34 233.0 23.0 266 239-518 167-440 (460)
44 KOG0281 Beta-TrCP (transducin 100.0 9.3E-32 2E-36 243.1 11.6 233 271-522 196-433 (499)
45 KOG0281 Beta-TrCP (transducin 100.0 5.2E-31 1.1E-35 238.2 15.8 258 239-521 211-481 (499)
46 KOG0640 mRNA cleavage stimulat 100.0 2.3E-29 5E-34 224.5 26.0 312 211-524 40-390 (430)
47 KOG0292 Vesicle coat complex C 100.0 1E-29 2.2E-34 254.5 24.8 248 262-517 41-321 (1202)
48 KOG0288 WD40 repeat protein Ti 100.0 5E-31 1.1E-35 243.7 14.3 271 253-529 156-429 (459)
49 PLN00181 protein SPA1-RELATED; 100.0 1.1E-28 2.4E-33 270.3 35.1 246 268-519 479-740 (793)
50 KOG1446 Histone H3 (Lys4) meth 100.0 2.2E-28 4.7E-33 219.9 29.3 252 264-522 6-267 (311)
51 KOG0296 Angio-associated migra 100.0 5.8E-29 1.3E-33 226.8 25.2 251 263-522 55-361 (399)
52 PLN00181 protein SPA1-RELATED; 100.0 4.5E-28 9.8E-33 265.5 36.9 270 239-516 499-792 (793)
53 KOG0289 mRNA splicing factor [ 100.0 1.8E-27 4E-32 221.3 33.7 250 261-516 250-505 (506)
54 KOG0277 Peroxisomal targeting 100.0 2.5E-29 5.5E-34 218.6 18.1 241 271-516 59-308 (311)
55 KOG0292 Vesicle coat complex C 100.0 3.8E-29 8.2E-34 250.4 21.3 248 267-520 4-283 (1202)
56 PTZ00421 coronin; Provisional 100.0 1.1E-27 2.4E-32 243.7 32.1 250 271-522 19-295 (493)
57 KOG0643 Translation initiation 100.0 5.9E-28 1.3E-32 211.5 25.7 245 267-520 5-320 (327)
58 KOG0316 Conserved WD40 repeat- 100.0 5.4E-28 1.2E-32 208.0 24.6 262 237-516 31-298 (307)
59 KOG1407 WD40 repeat protein [F 100.0 3.7E-28 8E-33 212.2 22.9 248 266-520 14-264 (313)
60 KOG0294 WD40 repeat-containing 100.0 8.3E-28 1.8E-32 215.3 25.5 248 262-519 33-283 (362)
61 KOG0305 Anaphase promoting com 100.0 3.9E-28 8.5E-33 238.1 25.5 278 225-519 178-463 (484)
62 KOG0276 Vesicle coat complex C 100.0 6E-28 1.3E-32 233.7 24.6 266 239-511 21-293 (794)
63 KOG0772 Uncharacterized conser 100.0 3.1E-28 6.8E-33 230.8 21.6 262 258-520 153-448 (641)
64 PTZ00420 coronin; Provisional 100.0 9E-27 2E-31 237.9 33.7 228 290-522 50-298 (568)
65 PTZ00421 coronin; Provisional 100.0 9.8E-27 2.1E-31 236.7 33.1 214 267-481 70-299 (493)
66 KOG0319 WD40-repeat-containing 100.0 5.4E-28 1.2E-32 238.5 21.9 270 237-521 295-581 (775)
67 KOG0274 Cdc4 and related F-box 100.0 4.5E-27 9.8E-32 239.4 29.0 265 236-523 219-488 (537)
68 KOG0306 WD40-repeat-containing 100.0 2.3E-27 5.1E-32 234.2 25.7 262 240-518 389-665 (888)
69 KOG0973 Histone transcription 100.0 3.2E-27 7E-32 243.2 26.8 276 243-521 35-359 (942)
70 KOG0278 Serine/threonine kinas 100.0 3.2E-28 7E-33 211.1 15.4 254 258-521 45-301 (334)
71 KOG0275 Conserved WD40 repeat- 100.0 2.7E-28 5.8E-33 218.8 13.8 270 239-515 229-507 (508)
72 PTZ00420 coronin; Provisional 100.0 8.5E-26 1.8E-30 230.8 32.9 210 263-473 65-295 (568)
73 KOG0313 Microtubule binding pr 100.0 1.5E-26 3.3E-31 212.0 22.5 249 261-520 95-379 (423)
74 KOG1332 Vesicle coat complex C 100.0 8.7E-27 1.9E-31 201.7 19.3 255 268-525 7-295 (299)
75 KOG0277 Peroxisomal targeting 100.0 2.5E-27 5.5E-32 206.2 15.9 227 234-470 72-308 (311)
76 KOG0288 WD40 repeat protein Ti 100.0 2.5E-27 5.4E-32 219.3 16.1 266 236-515 188-459 (459)
77 KOG0299 U3 snoRNP-associated p 99.9 2.4E-26 5.1E-31 215.7 22.2 253 265-520 135-413 (479)
78 KOG0772 Uncharacterized conser 99.9 1.3E-26 2.8E-31 219.9 19.8 273 237-515 181-485 (641)
79 KOG0289 mRNA splicing factor [ 99.9 5E-26 1.1E-30 211.8 23.1 247 273-525 220-470 (506)
80 KOG0641 WD40 repeat protein [G 99.9 6.5E-25 1.4E-29 187.8 27.9 254 260-517 77-349 (350)
81 KOG0310 Conserved WD40 repeat- 99.9 2.1E-26 4.6E-31 217.6 20.7 259 244-518 47-310 (487)
82 KOG0300 WD40 repeat-containing 99.9 4.4E-26 9.4E-31 204.2 20.2 270 245-527 126-438 (481)
83 KOG0310 Conserved WD40 repeat- 99.9 4.3E-26 9.4E-31 215.6 21.3 241 271-519 25-270 (487)
84 KOG0647 mRNA export protein (c 99.9 2.7E-25 5.9E-30 198.1 25.1 246 268-518 23-282 (347)
85 KOG0308 Conserved WD40 repeat- 99.9 1.4E-26 2.9E-31 225.5 17.9 242 277-522 29-290 (735)
86 KOG0268 Sof1-like rRNA process 99.9 5.5E-27 1.2E-31 213.6 13.4 247 263-518 57-346 (433)
87 KOG1446 Histone H3 (Lys4) meth 99.9 4.5E-24 9.8E-29 192.1 30.8 266 237-520 28-306 (311)
88 KOG0306 WD40-repeat-containing 99.9 1.8E-25 3.8E-30 221.0 23.5 243 266-518 367-623 (888)
89 KOG0274 Cdc4 and related F-box 99.9 3.2E-25 6.9E-30 225.9 26.1 243 271-527 207-451 (537)
90 KOG0643 Translation initiation 99.9 3.5E-25 7.7E-30 194.2 21.5 229 234-473 21-319 (327)
91 KOG0264 Nucleosome remodeling 99.9 2.9E-25 6.3E-30 208.5 22.1 246 270-518 122-405 (422)
92 KOG0278 Serine/threonine kinas 99.9 3.7E-26 7.9E-31 198.4 14.4 249 266-524 8-261 (334)
93 KOG0640 mRNA cleavage stimulat 99.9 2.2E-25 4.7E-30 199.2 19.2 282 232-517 120-426 (430)
94 KOG0300 WD40 repeat-containing 99.9 5E-25 1.1E-29 197.4 20.8 256 262-520 180-479 (481)
95 KOG0308 Conserved WD40 repeat- 99.9 3.4E-25 7.4E-30 215.8 17.8 278 234-518 36-328 (735)
96 KOG0641 WD40 repeat protein [G 99.9 7E-23 1.5E-27 175.4 29.2 255 263-523 24-309 (350)
97 KOG0269 WD40 repeat-containing 99.9 1.4E-25 3.1E-30 222.5 14.3 244 274-519 89-342 (839)
98 KOG1407 WD40 repeat protein [F 99.9 2.6E-23 5.7E-28 181.9 26.0 264 239-517 36-311 (313)
99 KOG0973 Histone transcription 99.9 5.4E-24 1.2E-28 219.6 24.5 245 271-519 12-314 (942)
100 KOG1332 Vesicle coat complex C 99.9 2E-24 4.2E-29 187.2 17.8 242 226-472 14-287 (299)
101 KOG0299 U3 snoRNP-associated p 99.9 1.3E-23 2.9E-28 197.4 23.4 242 269-516 199-455 (479)
102 KOG0301 Phospholipase A2-activ 99.9 1.5E-23 3.3E-28 205.9 23.3 262 235-518 25-289 (745)
103 KOG1274 WD40 repeat protein [G 99.9 5.1E-23 1.1E-27 208.3 27.1 245 269-519 10-264 (933)
104 KOG0264 Nucleosome remodeling 99.9 9E-24 2E-28 198.5 20.2 237 235-472 137-405 (422)
105 KOG2096 WD40 repeat protein [G 99.9 5.4E-23 1.2E-27 184.7 23.0 247 265-519 79-404 (420)
106 KOG0283 WD40 repeat-containing 99.9 1.8E-23 3.9E-28 210.6 22.1 205 262-472 359-577 (712)
107 KOG1273 WD40 repeat protein [G 99.9 3.3E-23 7.1E-28 185.8 21.2 260 259-525 12-288 (405)
108 KOG0301 Phospholipase A2-activ 99.9 2E-23 4.3E-28 205.1 21.6 243 263-517 5-249 (745)
109 KOG1408 WD40 repeat protein [F 99.9 1.4E-23 3E-28 206.2 20.6 278 234-518 391-714 (1080)
110 KOG2445 Nuclear pore complex c 99.9 1.4E-22 3.1E-27 181.3 25.0 246 269-518 10-319 (361)
111 KOG0639 Transducin-like enhanc 99.9 6.9E-24 1.5E-28 200.7 17.4 265 243-516 438-703 (705)
112 KOG0647 mRNA export protein (c 99.9 1.8E-22 4E-27 180.2 24.5 254 236-505 41-311 (347)
113 KOG0321 WD40 repeat-containing 99.9 1.3E-22 2.8E-27 197.6 22.3 280 238-521 67-395 (720)
114 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.9E-21 1.1E-25 186.4 33.9 264 239-521 5-283 (300)
115 KOG0646 WD40 repeat protein [G 99.9 9.4E-23 2E-27 192.1 20.1 217 271-492 80-327 (476)
116 KOG1036 Mitotic spindle checkp 99.9 1.1E-21 2.3E-26 176.1 24.9 240 271-520 12-265 (323)
117 KOG0305 Anaphase promoting com 99.9 1.5E-22 3.3E-27 198.9 21.3 224 238-473 232-463 (484)
118 KOG0639 Transducin-like enhanc 99.9 6.3E-23 1.4E-27 194.3 16.8 245 270-520 417-666 (705)
119 KOG0267 Microtubule severing p 99.9 4.8E-24 1E-28 210.2 9.1 236 266-509 22-260 (825)
120 KOG1036 Mitotic spindle checkp 99.9 1.4E-21 3E-26 175.3 24.0 265 236-520 26-319 (323)
121 KOG0646 WD40 repeat protein [G 99.9 5.6E-22 1.2E-26 186.8 22.0 232 285-520 51-310 (476)
122 KOG2055 WD40 repeat protein [G 99.9 6.4E-22 1.4E-26 186.0 21.0 314 195-517 170-512 (514)
123 KOG1539 WD repeat protein [Gen 99.9 3.6E-21 7.9E-26 192.9 26.8 268 240-521 177-610 (910)
124 KOG2048 WD40 repeat protein [G 99.9 9.7E-21 2.1E-25 186.0 29.3 243 271-521 24-279 (691)
125 KOG0650 WD40 repeat nucleolar 99.9 4.9E-22 1.1E-26 192.1 19.5 255 258-514 386-732 (733)
126 KOG0269 WD40 repeat-containing 99.9 8.3E-23 1.8E-27 203.0 14.5 232 235-473 100-342 (839)
127 KOG2106 Uncharacterized conser 99.9 1.3E-20 2.8E-25 178.9 28.2 244 264-518 237-522 (626)
128 KOG4283 Transcription-coupled 99.9 1.9E-21 4.1E-26 173.0 20.4 274 235-517 56-365 (397)
129 KOG0270 WD40 repeat-containing 99.9 1.2E-21 2.5E-26 183.6 19.4 236 283-522 191-454 (463)
130 KOG4283 Transcription-coupled 99.9 4.3E-21 9.3E-26 170.7 21.5 206 269-475 40-280 (397)
131 KOG4328 WD40 protein [Function 99.9 1.7E-21 3.7E-26 183.1 19.5 256 263-520 177-453 (498)
132 KOG1539 WD repeat protein [Gen 99.9 1.7E-21 3.7E-26 195.2 20.3 273 238-519 303-650 (910)
133 KOG0294 WD40 repeat-containing 99.9 1.2E-20 2.7E-25 169.5 23.4 225 286-519 3-239 (362)
134 KOG0321 WD40 repeat-containing 99.9 1.7E-21 3.6E-26 189.9 19.1 246 277-524 54-354 (720)
135 KOG0267 Microtubule severing p 99.9 8.4E-23 1.8E-27 201.5 8.8 196 265-463 63-260 (825)
136 KOG1408 WD40 repeat protein [F 99.9 4.2E-21 9.1E-26 188.9 20.5 285 236-523 329-677 (1080)
137 KOG0302 Ribosome Assembly prot 99.9 1.1E-20 2.5E-25 173.5 20.7 203 269-472 148-379 (440)
138 KOG1063 RNA polymerase II elon 99.9 9.1E-21 2E-25 186.4 20.8 288 229-519 272-650 (764)
139 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.9E-19 6.3E-24 173.9 30.5 232 284-523 1-243 (300)
140 KOG1274 WD40 repeat protein [G 99.9 4.1E-20 9E-25 187.4 24.7 259 237-514 27-297 (933)
141 KOG0268 Sof1-like rRNA process 99.9 1.3E-21 2.8E-26 178.7 12.5 213 309-526 58-311 (433)
142 KOG4378 Nuclear protein COP1 [ 99.9 6.5E-21 1.4E-25 180.5 17.6 256 230-494 40-303 (673)
143 KOG1034 Transcriptional repres 99.9 9.3E-21 2E-25 171.2 15.2 271 238-518 57-384 (385)
144 KOG2919 Guanine nucleotide-bin 99.9 6.8E-20 1.5E-24 165.2 20.6 241 276-518 53-328 (406)
145 KOG2055 WD40 repeat protein [G 99.8 1.1E-19 2.5E-24 171.0 20.2 242 272-518 213-468 (514)
146 KOG2106 Uncharacterized conser 99.8 2.3E-18 4.9E-23 163.9 28.7 251 267-527 195-487 (626)
147 KOG0303 Actin-binding protein 99.8 2E-19 4.4E-24 166.2 20.5 206 267-473 76-296 (472)
148 KOG1063 RNA polymerase II elon 99.8 9.5E-19 2E-23 172.4 26.3 276 240-524 164-609 (764)
149 KOG1445 Tumor-specific antigen 99.8 5.6E-20 1.2E-24 178.9 16.7 128 262-389 69-200 (1012)
150 KOG1273 WD40 repeat protein [G 99.8 1.1E-18 2.4E-23 157.0 23.3 264 240-519 40-324 (405)
151 KOG1009 Chromatin assembly com 99.8 7.1E-19 1.5E-23 163.4 22.6 281 237-522 28-377 (434)
152 KOG4328 WD40 protein [Function 99.8 2.8E-19 6.1E-24 168.3 19.8 251 263-518 225-496 (498)
153 KOG2096 WD40 repeat protein [G 99.8 3.5E-19 7.7E-24 160.3 19.1 204 311-518 80-309 (420)
154 KOG0307 Vesicle coat complex C 99.8 2E-20 4.4E-25 194.2 12.5 246 272-520 64-330 (1049)
155 KOG0302 Ribosome Assembly prot 99.8 2.1E-19 4.5E-24 165.3 17.5 225 241-468 171-435 (440)
156 KOG1538 Uncharacterized conser 99.8 2.9E-19 6.2E-24 174.9 19.0 257 244-520 32-296 (1081)
157 KOG1034 Transcriptional repres 99.8 3.8E-19 8.2E-24 160.8 18.4 251 267-521 33-341 (385)
158 KOG1007 WD repeat protein TSSC 99.8 5.2E-19 1.1E-23 157.2 18.6 249 266-518 57-362 (370)
159 KOG4378 Nuclear protein COP1 [ 99.8 4.7E-19 1E-23 168.1 18.9 240 274-520 36-283 (673)
160 KOG2048 WD40 repeat protein [G 99.8 1.1E-17 2.3E-22 164.8 28.8 266 237-518 39-320 (691)
161 KOG0303 Actin-binding protein 99.8 3.5E-18 7.6E-23 158.1 22.0 235 283-520 43-297 (472)
162 KOG0642 Cell-cycle nuclear pro 99.8 3E-19 6.5E-24 172.3 15.4 250 267-520 289-564 (577)
163 KOG0270 WD40 repeat-containing 99.8 1.2E-18 2.5E-23 163.7 17.2 233 237-473 194-451 (463)
164 KOG1188 WD40 repeat protein [G 99.8 2E-18 4.3E-23 157.1 17.4 186 285-473 41-244 (376)
165 PRK11028 6-phosphogluconolacto 99.8 1.5E-16 3.3E-21 157.1 31.9 274 240-524 7-313 (330)
166 KOG2919 Guanine nucleotide-bin 99.8 1.8E-17 3.8E-22 149.8 21.8 270 232-507 58-360 (406)
167 KOG2445 Nuclear pore complex c 99.8 3.1E-17 6.8E-22 147.3 22.2 233 234-471 24-318 (361)
168 KOG1009 Chromatin assembly com 99.8 3.6E-17 7.7E-22 152.1 20.8 247 272-519 13-331 (434)
169 KOG0322 G-protein beta subunit 99.8 6.8E-18 1.5E-22 148.4 15.2 247 261-516 3-322 (323)
170 KOG0644 Uncharacterized conser 99.8 6.7E-19 1.5E-23 176.5 9.8 245 264-520 182-471 (1113)
171 KOG1523 Actin-related protein 99.8 1E-16 2.2E-21 144.9 22.7 214 268-481 6-246 (361)
172 KOG4227 WD40 repeat protein [G 99.8 3.4E-17 7.3E-22 151.2 19.2 251 266-518 50-323 (609)
173 COG2319 FOG: WD40 repeat [Gene 99.8 1.3E-15 2.8E-20 154.5 33.0 249 267-521 60-318 (466)
174 COG2319 FOG: WD40 repeat [Gene 99.8 3.5E-15 7.7E-20 151.3 35.1 266 242-520 84-362 (466)
175 KOG0290 Conserved WD40 repeat- 99.8 8.6E-17 1.9E-21 143.3 19.6 243 273-519 45-320 (364)
176 KOG1587 Cytoplasmic dynein int 99.8 9.6E-17 2.1E-21 162.7 22.6 246 271-519 241-518 (555)
177 KOG0307 Vesicle coat complex C 99.8 3.2E-18 6.8E-23 178.1 11.2 234 237-473 82-329 (1049)
178 KOG0771 Prolactin regulatory e 99.7 2.2E-17 4.7E-22 154.7 14.3 192 276-472 148-355 (398)
179 KOG1445 Tumor-specific antigen 99.7 3.1E-17 6.7E-22 160.0 15.8 236 280-518 587-845 (1012)
180 KOG1538 Uncharacterized conser 99.7 6.3E-17 1.4E-21 158.7 17.5 231 274-518 14-253 (1081)
181 KOG0649 WD40 repeat protein [G 99.7 4E-16 8.7E-21 135.8 20.0 232 273-518 11-275 (325)
182 KOG0642 Cell-cycle nuclear pro 99.7 3.8E-17 8.3E-22 157.9 15.2 249 234-484 305-573 (577)
183 KOG1240 Protein kinase contain 99.7 1.2E-15 2.6E-20 159.5 26.5 262 258-522 1034-1339(1431)
184 KOG2110 Uncharacterized conser 99.7 5.4E-15 1.2E-19 136.3 26.5 237 272-520 5-251 (391)
185 KOG0649 WD40 repeat protein [G 99.7 9.9E-15 2.2E-19 127.2 26.4 278 225-515 13-314 (325)
186 KOG0650 WD40 repeat nucleolar 99.7 3.2E-16 6.9E-21 152.3 18.5 203 309-516 392-679 (733)
187 PRK01742 tolB translocation pr 99.7 6.7E-16 1.4E-20 157.4 21.4 212 264-486 195-417 (429)
188 KOG1334 WD40 repeat protein [G 99.7 1.4E-16 3E-21 151.4 14.2 255 266-522 136-429 (559)
189 KOG1007 WD repeat protein TSSC 99.7 5.6E-16 1.2E-20 138.1 17.0 224 292-519 38-291 (370)
190 KOG1517 Guanine nucleotide bin 99.7 1.5E-15 3.3E-20 156.3 22.4 275 234-520 1075-1384(1387)
191 KOG1310 WD40 repeat protein [G 99.7 1.6E-16 3.4E-21 152.9 13.3 211 265-478 43-310 (758)
192 KOG0290 Conserved WD40 repeat- 99.7 2.1E-15 4.5E-20 134.6 19.1 233 270-507 94-356 (364)
193 PRK11028 6-phosphogluconolacto 99.7 3.5E-14 7.6E-19 140.2 29.4 228 288-519 6-260 (330)
194 PRK01742 tolB translocation pr 99.7 3.6E-15 7.8E-20 152.1 22.2 209 293-516 183-400 (429)
195 KOG1524 WD40 repeat-containing 99.7 6.7E-16 1.5E-20 148.2 14.2 191 262-469 94-284 (737)
196 KOG2139 WD40 repeat protein [G 99.7 3.9E-14 8.5E-19 130.2 24.9 269 236-517 111-431 (445)
197 PRK03629 tolB translocation pr 99.7 2.5E-14 5.4E-19 145.6 26.4 213 266-486 192-419 (429)
198 KOG1524 WD40 repeat-containing 99.7 1.5E-15 3.3E-20 145.8 15.9 205 286-514 77-283 (737)
199 KOG1963 WD40 repeat protein [G 99.7 3E-14 6.5E-19 145.0 25.2 245 270-519 203-540 (792)
200 KOG1188 WD40 repeat protein [G 99.7 5.1E-15 1.1E-19 135.1 17.2 189 330-520 41-245 (376)
201 KOG1517 Guanine nucleotide bin 99.7 1.7E-14 3.8E-19 148.7 23.0 252 274-526 1066-1342(1387)
202 KOG2110 Uncharacterized conser 99.7 5.3E-13 1.1E-17 123.4 30.4 237 274-519 48-332 (391)
203 PRK03629 tolB translocation pr 99.7 1.1E-13 2.3E-18 140.9 28.4 219 294-524 179-413 (429)
204 PRK05137 tolB translocation pr 99.7 4.8E-14 1.1E-18 144.3 26.0 206 262-473 191-414 (435)
205 KOG0771 Prolactin regulatory e 99.6 2.7E-15 5.9E-20 140.7 14.9 193 321-518 148-355 (398)
206 PRK04922 tolB translocation pr 99.6 5.3E-14 1.2E-18 143.8 25.0 213 263-483 194-421 (433)
207 PRK05137 tolB translocation pr 99.6 1.5E-13 3.3E-18 140.6 28.3 219 294-524 182-419 (435)
208 KOG0322 G-protein beta subunit 99.6 7.7E-15 1.7E-19 129.4 15.4 232 230-470 20-322 (323)
209 KOG1310 WD40 repeat protein [G 99.6 5.2E-15 1.1E-19 142.5 14.7 214 309-523 42-309 (758)
210 PRK02889 tolB translocation pr 99.6 1.1E-13 2.3E-18 141.1 24.9 213 263-483 186-413 (427)
211 KOG4227 WD40 repeat protein [G 99.6 7.9E-14 1.7E-18 129.2 20.4 273 239-517 72-387 (609)
212 KOG1523 Actin-related protein 99.6 4.5E-14 9.7E-19 127.9 18.3 202 315-520 8-239 (361)
213 PRK04922 tolB translocation pr 99.6 1.7E-13 3.6E-18 140.1 25.1 219 294-524 184-418 (433)
214 KOG2394 WD40 protein DMR-N9 [G 99.6 6.4E-14 1.4E-18 134.9 20.2 244 274-522 125-457 (636)
215 KOG1963 WD40 repeat protein [G 99.6 1.2E-13 2.6E-18 140.8 22.3 238 276-520 20-378 (792)
216 KOG1272 WD40-repeat-containing 99.6 5.5E-15 1.2E-19 139.8 11.1 227 274-515 131-360 (545)
217 KOG2111 Uncharacterized conser 99.6 1.1E-12 2.4E-17 119.0 25.4 237 274-520 7-259 (346)
218 KOG1587 Cytoplasmic dynein int 99.6 4.6E-13 1E-17 136.1 25.4 225 293-523 221-478 (555)
219 KOG0644 Uncharacterized conser 99.6 1.4E-15 3E-20 153.0 6.7 210 310-526 183-435 (1113)
220 KOG1354 Serine/threonine prote 99.6 4.8E-13 1E-17 122.4 21.8 250 272-524 25-366 (433)
221 PF08662 eIF2A: Eukaryotic tra 99.6 4E-13 8.6E-18 120.8 20.3 154 321-479 9-185 (194)
222 PRK02889 tolB translocation pr 99.6 1.7E-12 3.7E-17 132.3 27.4 214 294-519 176-405 (427)
223 KOG3881 Uncharacterized conser 99.6 3.5E-13 7.5E-18 125.4 20.0 243 271-520 54-323 (412)
224 KOG4497 Uncharacterized conser 99.6 2.1E-14 4.6E-19 130.3 11.6 219 277-515 13-238 (447)
225 KOG1240 Protein kinase contain 99.6 6.2E-13 1.3E-17 139.5 23.2 220 308-528 1039-1284(1431)
226 PF02239 Cytochrom_D1: Cytochr 99.6 6.5E-12 1.4E-16 124.2 29.6 269 241-523 12-353 (369)
227 PF08662 eIF2A: Eukaryotic tra 99.6 3.3E-13 7.2E-18 121.3 18.7 157 363-526 9-188 (194)
228 KOG2394 WD40 protein DMR-N9 [G 99.6 4.6E-14 1E-18 135.9 13.6 140 272-411 219-384 (636)
229 TIGR02800 propeller_TolB tol-p 99.5 3.9E-12 8.5E-17 130.1 27.4 218 293-522 169-402 (417)
230 KOG2321 WD40 repeat protein [G 99.5 4.9E-13 1.1E-17 129.9 18.9 241 271-518 50-344 (703)
231 PF10282 Lactonase: Lactonase, 99.5 8.6E-11 1.9E-15 116.4 35.2 251 272-525 36-332 (345)
232 KOG2139 WD40 repeat protein [G 99.5 1.4E-12 3E-17 120.2 19.7 194 273-471 99-309 (445)
233 TIGR02800 propeller_TolB tol-p 99.5 3.1E-12 6.7E-17 130.8 25.0 201 265-471 182-397 (417)
234 KOG1334 WD40 repeat protein [G 99.5 2E-13 4.4E-18 130.1 14.4 277 233-519 152-468 (559)
235 PRK00178 tolB translocation pr 99.5 5.9E-12 1.3E-16 129.0 26.3 203 265-473 191-408 (430)
236 KOG2111 Uncharacterized conser 99.5 3.7E-11 8E-16 109.2 24.7 230 230-473 11-258 (346)
237 PRK00178 tolB translocation pr 99.5 2.6E-11 5.7E-16 124.3 27.3 215 295-521 180-410 (430)
238 PRK04792 tolB translocation pr 99.5 2.8E-11 6E-16 123.8 26.5 218 295-524 199-432 (448)
239 PRK04792 tolB translocation pr 99.5 1.8E-11 3.8E-16 125.3 25.0 210 266-483 211-435 (448)
240 KOG3881 Uncharacterized conser 99.4 8.3E-12 1.8E-16 116.3 18.8 206 270-479 103-327 (412)
241 KOG1272 WD40-repeat-containing 99.4 3E-13 6.4E-18 128.3 9.4 193 320-520 132-326 (545)
242 KOG4497 Uncharacterized conser 99.4 1.1E-10 2.3E-15 106.5 24.5 252 244-512 70-427 (447)
243 KOG1832 HIV-1 Vpr-binding prot 99.4 1.5E-13 3.3E-18 139.2 5.2 272 219-519 1012-1293(1516)
244 PF02239 Cytochrom_D1: Cytochr 99.4 5.9E-10 1.3E-14 110.4 30.6 183 287-473 9-204 (369)
245 KOG4547 WD40 repeat-containing 99.4 1.2E-10 2.6E-15 114.4 24.5 206 281-488 2-240 (541)
246 PRK01029 tolB translocation pr 99.4 1.2E-10 2.7E-15 118.1 25.3 202 267-473 179-405 (428)
247 PRK01029 tolB translocation pr 99.4 3.7E-10 8.1E-15 114.6 26.9 222 294-525 165-411 (428)
248 KOG0974 WD-repeat protein WDR6 99.4 1.3E-11 2.9E-16 128.1 16.3 152 278-434 139-291 (967)
249 KOG2315 Predicted translation 99.4 3.7E-10 8E-15 110.2 24.3 237 273-523 35-396 (566)
250 PF10282 Lactonase: Lactonase, 99.3 4.6E-09 9.9E-14 104.1 32.6 201 271-471 85-322 (345)
251 KOG1409 Uncharacterized conser 99.3 4.6E-11 9.9E-16 109.6 16.2 254 262-523 14-276 (404)
252 COG2706 3-carboxymuconate cycl 99.3 8.7E-09 1.9E-13 96.1 30.2 255 270-525 37-331 (346)
253 KOG0280 Uncharacterized conser 99.3 3.8E-10 8.3E-15 101.6 19.1 246 272-521 69-337 (339)
254 PLN02919 haloacid dehalogenase 99.3 5.6E-09 1.2E-13 116.7 33.0 237 277-521 572-892 (1057)
255 KOG2041 WD40 repeat protein [G 99.3 1.1E-10 2.5E-15 116.3 15.3 231 272-508 14-279 (1189)
256 KOG0974 WD-repeat protein WDR6 99.3 1.7E-10 3.7E-15 120.0 17.2 194 320-519 90-290 (967)
257 KOG1064 RAVE (regulator of V-A 99.3 4.7E-11 1E-15 129.8 13.1 199 268-482 2204-2408(2439)
258 KOG4547 WD40 repeat-containing 99.2 9.1E-10 2E-14 108.3 20.7 189 327-518 3-221 (541)
259 KOG1064 RAVE (regulator of V-A 99.2 7E-11 1.5E-15 128.5 13.5 208 290-519 2186-2400(2439)
260 COG4946 Uncharacterized protei 99.2 6.9E-09 1.5E-13 99.3 25.2 146 270-420 357-507 (668)
261 COG2706 3-carboxymuconate cycl 99.2 2.3E-08 5E-13 93.3 27.8 235 293-529 15-288 (346)
262 PRK04043 tolB translocation pr 99.2 9.3E-09 2E-13 103.8 27.2 192 274-473 189-402 (419)
263 KOG2321 WD40 repeat protein [G 99.2 3.5E-10 7.6E-15 110.4 15.9 183 287-473 148-345 (703)
264 TIGR02658 TTQ_MADH_Hv methylam 99.2 6.4E-08 1.4E-12 93.9 31.6 258 245-523 27-336 (352)
265 KOG2315 Predicted translation 99.2 3E-09 6.6E-14 103.9 22.3 199 271-473 164-392 (566)
266 COG4946 Uncharacterized protei 99.2 1.1E-08 2.4E-13 98.0 24.8 216 281-506 275-507 (668)
267 KOG1409 Uncharacterized conser 99.2 2.5E-09 5.4E-14 98.4 19.7 236 229-472 30-271 (404)
268 KOG2314 Translation initiation 99.2 3.5E-09 7.6E-14 103.2 20.6 233 274-518 212-526 (698)
269 KOG1354 Serine/threonine prote 99.2 1.7E-09 3.7E-14 99.5 17.4 234 236-473 38-361 (433)
270 KOG4532 WD40-like repeat conta 99.2 9.4E-09 2E-13 91.6 21.5 248 277-531 72-343 (344)
271 COG5170 CDC55 Serine/threonine 99.2 1.1E-09 2.3E-14 99.4 15.4 245 271-518 25-368 (460)
272 PRK04043 tolB translocation pr 99.2 5.2E-08 1.1E-12 98.4 29.4 196 319-524 189-407 (419)
273 COG5354 Uncharacterized protei 99.2 1.8E-08 3.8E-13 97.5 24.2 248 262-520 118-398 (561)
274 KOG2659 LisH motif-containing 99.1 3.1E-10 6.8E-15 100.1 10.1 114 61-174 24-144 (228)
275 KOG0309 Conserved WD40 repeat- 99.1 2.8E-10 6.1E-15 114.0 10.9 244 274-519 69-341 (1081)
276 KOG1912 WD40 repeat protein [G 99.1 6.7E-09 1.5E-13 104.9 20.7 238 274-518 17-305 (1062)
277 KOG0280 Uncharacterized conser 99.1 2.2E-09 4.7E-14 96.8 14.2 195 275-470 124-332 (339)
278 KOG2041 WD40 repeat protein [G 99.1 4.4E-09 9.5E-14 105.2 17.6 221 265-489 64-313 (1189)
279 KOG4190 Uncharacterized conser 99.1 5.7E-10 1.2E-14 108.3 10.0 244 263-515 726-986 (1034)
280 PF08450 SGL: SMP-30/Gluconola 99.1 7.7E-07 1.7E-11 83.9 31.0 215 277-505 4-243 (246)
281 PLN02919 haloacid dehalogenase 99.0 1E-07 2.2E-12 106.7 28.0 198 274-473 625-890 (1057)
282 KOG2314 Translation initiation 99.0 2.2E-08 4.8E-13 97.7 18.8 241 274-519 251-575 (698)
283 KOG1912 WD40 repeat protein [G 99.0 1.2E-08 2.6E-13 103.2 17.3 261 258-522 41-369 (1062)
284 PF04762 IKI3: IKI3 family; I 99.0 1.2E-07 2.5E-12 104.3 26.5 245 271-519 119-458 (928)
285 PF04762 IKI3: IKI3 family; I 99.0 1.1E-07 2.5E-12 104.4 25.7 235 271-515 74-377 (928)
286 KOG0882 Cyclophilin-related pe 99.0 7E-09 1.5E-13 98.7 13.6 248 271-524 8-312 (558)
287 TIGR03300 assembly_YfgL outer 99.0 3.9E-07 8.5E-12 91.8 27.5 225 283-522 104-343 (377)
288 PF15492 Nbas_N: Neuroblastoma 99.0 3.4E-07 7.4E-12 83.1 23.4 207 277-486 2-273 (282)
289 KOG4190 Uncharacterized conser 99.0 8.6E-10 1.9E-14 107.1 6.6 205 309-520 727-951 (1034)
290 KOG1832 HIV-1 Vpr-binding prot 98.9 7.5E-10 1.6E-14 113.0 5.0 217 263-503 1092-1317(1516)
291 KOG2695 WD40 repeat protein [G 98.9 4.1E-09 9E-14 97.1 8.5 152 365-521 217-380 (425)
292 COG5354 Uncharacterized protei 98.9 4E-07 8.7E-12 88.4 22.1 236 273-520 72-351 (561)
293 PF13360 PQQ_2: PQQ-like domai 98.9 1.2E-06 2.5E-11 82.2 24.3 214 293-521 2-234 (238)
294 PF07433 DUF1513: Protein of u 98.8 5.1E-06 1.1E-10 78.0 26.4 205 276-484 8-259 (305)
295 KOG3914 WD repeat protein WDR4 98.8 1E-07 2.2E-12 90.0 15.1 158 274-434 64-226 (390)
296 KOG3914 WD repeat protein WDR4 98.8 7E-08 1.5E-12 91.0 13.6 158 320-481 65-232 (390)
297 KOG4714 Nucleoporin [Nuclear s 98.8 4.6E-08 1E-12 86.9 10.9 166 265-432 82-255 (319)
298 TIGR03300 assembly_YfgL outer 98.8 2.3E-06 4.9E-11 86.3 24.7 222 283-521 64-301 (377)
299 PF08450 SGL: SMP-30/Gluconola 98.8 1E-05 2.2E-10 76.2 27.6 192 322-521 4-216 (246)
300 PF15492 Nbas_N: Neuroblastoma 98.8 3.6E-06 7.9E-11 76.6 22.3 194 323-520 3-262 (282)
301 TIGR02658 TTQ_MADH_Hv methylam 98.8 1.6E-05 3.4E-10 77.4 28.2 218 294-523 27-293 (352)
302 KOG4532 WD40-like repeat conta 98.8 1.2E-06 2.7E-11 78.4 18.5 223 292-525 50-290 (344)
303 KOG1645 RING-finger-containing 98.8 5.3E-06 1.2E-10 78.5 23.4 245 263-518 184-462 (463)
304 KOG0309 Conserved WD40 repeat- 98.7 5.8E-08 1.3E-12 97.8 10.5 223 247-472 85-340 (1081)
305 PF00400 WD40: WD domain, G-be 98.7 5.3E-08 1.1E-12 62.5 6.0 38 263-300 2-39 (39)
306 KOG1920 IkappaB kinase complex 98.7 6.4E-06 1.4E-10 88.2 24.6 198 271-473 67-324 (1265)
307 KOG2114 Vacuolar assembly/sort 98.6 7.5E-06 1.6E-10 84.6 21.5 205 274-486 27-258 (933)
308 PF07433 DUF1513: Protein of u 98.6 2.7E-05 5.8E-10 73.2 22.7 184 278-466 56-280 (305)
309 KOG1275 PAB-dependent poly(A) 98.6 2.1E-06 4.5E-11 89.0 15.9 180 283-470 146-341 (1118)
310 KOG4714 Nucleoporin [Nuclear s 98.5 3.8E-07 8.3E-12 81.2 9.1 196 320-519 39-256 (319)
311 PF13360 PQQ_2: PQQ-like domai 98.5 2.6E-05 5.7E-10 72.9 22.5 188 282-477 34-235 (238)
312 KOG1275 PAB-dependent poly(A) 98.5 2.1E-06 4.5E-11 89.0 15.2 183 328-515 146-340 (1118)
313 COG5170 CDC55 Serine/threonine 98.5 1.2E-06 2.5E-11 80.1 11.4 201 317-520 26-312 (460)
314 PRK11138 outer membrane biogen 98.5 2E-05 4.4E-10 79.8 21.8 222 283-521 119-357 (394)
315 PF08513 LisH: LisH; InterPro 98.5 1.9E-07 4.1E-12 53.6 3.7 27 64-90 1-27 (27)
316 KOG2066 Vacuolar assembly/sort 98.5 1.3E-05 2.9E-10 82.3 19.2 179 273-471 40-233 (846)
317 PF00400 WD40: WD domain, G-be 98.5 6.6E-07 1.4E-11 57.3 6.5 38 308-345 2-39 (39)
318 PRK11138 outer membrane biogen 98.5 9E-05 2E-09 75.1 25.2 219 284-516 160-393 (394)
319 KOG1008 Uncharacterized conser 98.4 6.6E-08 1.4E-12 96.2 0.9 197 273-472 57-276 (783)
320 KOG2695 WD40 repeat protein [G 98.4 9.1E-07 2E-11 81.9 7.8 129 271-400 251-387 (425)
321 PF11768 DUF3312: Protein of u 98.4 0.00057 1.2E-08 68.7 27.8 113 361-473 207-331 (545)
322 KOG1920 IkappaB kinase complex 98.4 8.5E-05 1.8E-09 79.9 22.7 199 317-520 68-325 (1265)
323 KOG1645 RING-finger-containing 98.4 2.4E-05 5.2E-10 74.2 16.3 213 308-524 184-426 (463)
324 KOG0882 Cyclophilin-related pe 98.3 2.5E-06 5.3E-11 81.8 9.6 208 315-524 7-238 (558)
325 PF04053 Coatomer_WDAD: Coatom 98.3 0.0002 4.4E-09 72.4 23.7 221 270-518 30-263 (443)
326 PRK02888 nitrous-oxide reducta 98.3 0.00014 3E-09 74.8 22.5 227 287-518 69-405 (635)
327 COG0823 TolB Periplasmic compo 98.3 2.9E-05 6.3E-10 78.2 17.1 194 264-463 184-391 (425)
328 PF06433 Me-amine-dh_H: Methyl 98.3 0.00096 2.1E-08 63.7 25.6 239 277-523 40-326 (342)
329 KOG2066 Vacuolar assembly/sort 98.3 3.6E-05 7.8E-10 79.2 17.0 142 281-432 80-234 (846)
330 KOG3617 WD40 and TPR repeat-co 98.3 2.9E-05 6.4E-10 80.0 16.2 98 238-347 34-131 (1416)
331 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.0006 1.3E-08 61.4 22.2 235 283-529 62-321 (354)
332 PRK02888 nitrous-oxide reducta 98.3 0.00023 5.1E-09 73.2 22.3 217 279-506 199-450 (635)
333 KOG3617 WD40 and TPR repeat-co 98.3 1.7E-05 3.7E-10 81.7 13.9 109 276-389 19-131 (1416)
334 KOG2114 Vacuolar assembly/sort 98.2 0.00012 2.6E-09 76.0 19.9 189 324-518 30-244 (933)
335 KOG0396 Uncharacterized conser 98.2 2E-05 4.4E-10 74.0 12.4 122 62-183 114-241 (389)
336 smart00667 LisH Lissencephaly 98.2 2.6E-06 5.7E-11 52.6 4.0 32 62-93 2-33 (34)
337 PF02897 Peptidase_S9_N: Proly 98.2 0.0038 8.2E-08 63.7 29.4 241 274-525 125-412 (414)
338 COG0823 TolB Periplasmic compo 98.1 0.00018 3.9E-09 72.5 18.5 159 313-473 188-360 (425)
339 PF11768 DUF3312: Protein of u 98.1 3E-05 6.6E-10 77.6 12.5 116 274-392 207-332 (545)
340 COG3391 Uncharacterized conser 98.1 0.0056 1.2E-07 61.5 28.7 241 274-523 32-289 (381)
341 KOG1008 Uncharacterized conser 98.1 1.4E-06 3E-11 87.1 2.3 198 318-518 57-276 (783)
342 PF08596 Lgl_C: Lethal giant l 98.1 0.0023 5.1E-08 63.9 24.8 230 274-506 3-325 (395)
343 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.00087 1.9E-08 66.7 21.7 235 281-524 1-323 (353)
344 PF06977 SdiA-regulated: SdiA- 98.1 0.0031 6.8E-08 58.5 23.6 198 267-468 16-247 (248)
345 PF10607 CLTH: CTLH/CRA C-term 98.0 8.1E-06 1.8E-10 69.9 5.9 134 98-231 4-139 (145)
346 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.0074 1.6E-07 54.6 24.4 186 284-479 23-213 (354)
347 PF08553 VID27: VID27 cytoplas 98.0 0.00067 1.5E-08 72.4 20.8 133 336-470 501-646 (794)
348 COG3386 Gluconolactonase [Carb 98.0 0.0029 6.2E-08 60.9 23.4 217 279-507 31-275 (307)
349 COG3391 Uncharacterized conser 98.0 0.0037 8E-08 62.8 24.8 202 275-482 76-293 (381)
350 KOG3621 WD40 repeat-containing 98.0 0.00075 1.6E-08 68.9 18.9 146 237-391 47-199 (726)
351 cd00216 PQQ_DH Dehydrogenases 98.0 0.0029 6.3E-08 65.9 24.2 229 285-521 111-428 (488)
352 smart00668 CTLH C-terminal to 97.9 6.7E-06 1.4E-10 57.9 3.0 54 97-150 3-56 (58)
353 KOG3621 WD40 repeat-containing 97.9 0.00014 3.1E-09 73.9 13.3 154 316-472 32-198 (726)
354 PF00930 DPPIV_N: Dipeptidyl p 97.9 0.0018 4E-08 64.4 21.1 236 263-505 33-345 (353)
355 PF06977 SdiA-regulated: SdiA- 97.9 0.014 3E-07 54.3 24.0 197 311-514 15-247 (248)
356 PF04841 Vps16_N: Vps16, N-ter 97.8 0.019 4.2E-07 58.1 26.0 195 278-483 34-257 (410)
357 PF03178 CPSF_A: CPSF A subuni 97.8 0.0035 7.7E-08 61.5 19.9 174 339-518 2-203 (321)
358 PF14583 Pectate_lyase22: Olig 97.8 0.0043 9.3E-08 60.5 19.6 200 323-523 41-278 (386)
359 PF00780 CNH: CNH domain; Int 97.7 0.039 8.5E-07 52.7 26.4 220 282-524 5-262 (275)
360 PF03178 CPSF_A: CPSF A subuni 97.7 0.018 4E-07 56.5 24.1 179 284-468 42-262 (321)
361 PF14583 Pectate_lyase22: Olig 97.7 0.047 1E-06 53.4 25.0 235 278-523 41-334 (386)
362 KOG2395 Protein involved in va 97.7 0.001 2.2E-08 65.8 13.7 137 332-471 349-500 (644)
363 PHA02713 hypothetical protein; 97.6 0.0074 1.6E-07 63.8 20.8 222 295-524 273-540 (557)
364 PF08596 Lgl_C: Lethal giant l 97.6 0.011 2.3E-07 59.3 20.5 205 263-470 77-334 (395)
365 PRK13616 lipoprotein LpqB; Pro 97.6 0.0085 1.8E-07 63.2 20.7 184 273-467 350-564 (591)
366 KOG4640 Anaphase-promoting com 97.6 0.00035 7.6E-09 70.4 9.7 94 271-368 19-114 (665)
367 PRK10115 protease 2; Provision 97.6 0.15 3.3E-06 55.3 30.5 243 274-525 128-402 (686)
368 PRK13616 lipoprotein LpqB; Pro 97.6 0.0094 2E-07 62.9 20.5 148 316-471 348-525 (591)
369 smart00320 WD40 WD40 repeats. 97.6 0.00019 4.1E-09 44.6 5.1 38 263-300 3-40 (40)
370 PF14655 RAB3GAP2_N: Rab3 GTPa 97.5 0.12 2.5E-06 51.9 27.4 80 442-523 308-404 (415)
371 KOG4640 Anaphase-promoting com 97.5 0.00042 9E-09 69.9 9.2 94 317-411 20-115 (665)
372 PF08553 VID27: VID27 cytoplas 97.5 0.017 3.7E-07 62.1 21.2 134 292-430 502-646 (794)
373 PF02897 Peptidase_S9_N: Proly 97.4 0.12 2.6E-06 52.7 26.6 194 320-517 126-357 (414)
374 PF06433 Me-amine-dh_H: Methyl 97.4 0.12 2.5E-06 49.8 23.9 202 277-485 99-333 (342)
375 PF04841 Vps16_N: Vps16, N-ter 97.4 0.064 1.4E-06 54.4 23.9 199 262-469 70-285 (410)
376 KOG4441 Proteins containing BT 97.4 0.027 5.9E-07 59.5 21.0 233 281-524 282-553 (571)
377 PF14870 PSII_BNR: Photosynthe 97.4 0.15 3.2E-06 49.0 26.0 229 275-514 64-301 (302)
378 PF04053 Coatomer_WDAD: Coatom 97.3 0.022 4.7E-07 57.9 19.1 181 273-471 69-262 (443)
379 cd00216 PQQ_DH Dehydrogenases 97.3 0.023 5E-07 59.1 19.6 187 329-521 61-323 (488)
380 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.025 5.4E-07 44.7 14.7 100 320-426 2-109 (111)
381 COG3204 Uncharacterized protei 97.3 0.089 1.9E-06 49.0 20.2 161 313-473 81-265 (316)
382 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.033 7.2E-07 44.0 15.1 101 362-467 2-110 (111)
383 COG3386 Gluconolactonase [Carb 97.2 0.051 1.1E-06 52.4 19.6 183 276-460 69-274 (307)
384 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.2 0.16 3.5E-06 53.3 24.7 229 285-521 121-494 (527)
385 PF05694 SBP56: 56kDa selenium 97.2 0.26 5.7E-06 48.8 24.2 191 283-473 86-344 (461)
386 smart00320 WD40 WD40 repeats. 97.1 0.0015 3.3E-08 40.3 5.6 37 309-345 4-40 (40)
387 PHA02713 hypothetical protein; 97.1 0.019 4.2E-07 60.6 16.7 184 283-473 303-535 (557)
388 COG3490 Uncharacterized protei 97.1 0.18 3.8E-06 46.7 19.6 231 277-516 72-347 (366)
389 KOG1897 Damage-specific DNA bi 96.9 0.81 1.8E-05 49.5 26.2 255 272-531 530-830 (1096)
390 COG3490 Uncharacterized protei 96.9 0.094 2E-06 48.4 16.6 187 279-469 120-346 (366)
391 KOG2079 Vacuolar assembly/sort 96.9 0.0036 7.7E-08 67.2 8.5 98 283-382 98-198 (1206)
392 PF00780 CNH: CNH domain; Int 96.9 0.45 9.7E-06 45.4 25.7 198 275-484 38-267 (275)
393 KOG2817 Predicted E3 ubiquitin 96.8 0.0069 1.5E-07 58.2 9.3 106 63-168 116-230 (394)
394 KOG4441 Proteins containing BT 96.8 0.046 1E-06 57.8 16.5 188 283-473 332-548 (571)
395 PF14870 PSII_BNR: Photosynthe 96.8 0.53 1.1E-05 45.2 26.5 232 272-513 16-257 (302)
396 KOG1897 Damage-specific DNA bi 96.8 1.1 2.4E-05 48.6 28.0 235 273-517 354-613 (1096)
397 KOG4499 Ca2+-binding protein R 96.8 0.39 8.4E-06 43.2 18.9 213 285-505 28-272 (310)
398 KOG2395 Protein involved in va 96.7 0.03 6.5E-07 55.8 12.7 143 283-431 344-500 (644)
399 KOG2444 WD40 repeat protein [G 96.7 0.003 6.5E-08 56.1 5.4 138 374-518 33-178 (238)
400 PHA03098 kelch-like protein; P 96.7 0.075 1.6E-06 56.2 17.1 191 328-524 294-518 (534)
401 COG3204 Uncharacterized protei 96.6 0.45 9.8E-06 44.4 19.1 163 269-433 82-265 (316)
402 PHA03098 kelch-like protein; P 96.6 0.1 2.3E-06 55.2 17.6 187 282-473 293-513 (534)
403 KOG2079 Vacuolar assembly/sort 96.6 0.0075 1.6E-07 64.8 8.4 101 412-516 98-202 (1206)
404 COG4257 Vgb Streptogramin lyas 96.5 0.68 1.5E-05 42.8 20.4 195 274-473 63-264 (353)
405 PF15390 DUF4613: Domain of un 96.5 0.24 5.2E-06 50.5 17.6 168 273-451 20-212 (671)
406 PRK10115 protease 2; Provision 96.4 2 4.3E-05 46.9 26.1 192 319-516 128-343 (686)
407 PF10647 Gmad1: Lipoprotein Lp 96.3 0.94 2E-05 42.6 20.4 146 274-423 25-187 (253)
408 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.3 0.7 1.5E-05 48.6 21.0 188 329-521 69-337 (527)
409 TIGR02604 Piru_Ver_Nterm putat 96.2 0.14 3.1E-06 51.2 15.0 144 274-420 15-202 (367)
410 PF14727 PHTB1_N: PTHB1 N-term 96.2 1.6 3.4E-05 44.0 28.9 148 283-431 36-204 (418)
411 COG4257 Vgb Streptogramin lyas 96.2 0.89 1.9E-05 42.0 18.0 193 319-522 63-267 (353)
412 PF05694 SBP56: 56kDa selenium 96.2 0.83 1.8E-05 45.4 19.2 180 278-460 135-392 (461)
413 TIGR03074 PQQ_membr_DH membran 96.2 1.3 2.7E-05 48.5 22.6 189 329-521 194-481 (764)
414 PF07995 GSDH: Glucose / Sorbo 96.2 1.5 3.2E-05 43.1 25.5 235 274-512 3-330 (331)
415 TIGR03118 PEPCTERM_chp_1 conse 96.1 1.3 2.8E-05 41.8 22.9 212 274-486 24-293 (336)
416 PHA02790 Kelch-like protein; P 96.0 0.55 1.2E-05 48.9 18.6 184 283-473 271-472 (480)
417 KOG2444 WD40 repeat protein [G 96.0 0.022 4.8E-07 50.8 6.9 104 284-389 70-177 (238)
418 PHA02790 Kelch-like protein; P 96.0 0.55 1.2E-05 48.9 18.3 187 328-522 271-475 (480)
419 PF15390 DUF4613: Domain of un 95.9 0.26 5.7E-06 50.2 14.6 146 318-471 20-186 (671)
420 PF12894 Apc4_WD40: Anaphase-p 95.8 0.034 7.3E-07 36.7 5.4 35 316-351 10-44 (47)
421 PF12894 Apc4_WD40: Anaphase-p 95.8 0.031 6.6E-07 36.9 5.2 31 272-302 11-41 (47)
422 PF10647 Gmad1: Lipoprotein Lp 95.7 1.8 4E-05 40.7 21.1 143 319-464 25-188 (253)
423 TIGR02604 Piru_Ver_Nterm putat 95.7 0.58 1.3E-05 46.8 16.5 140 319-460 15-202 (367)
424 PF05096 Glu_cyclase_2: Glutam 95.7 1.9 4E-05 40.3 23.1 180 274-460 46-249 (264)
425 KOG3630 Nuclear pore complex, 95.5 0.19 4.2E-06 54.8 12.5 144 274-418 102-260 (1405)
426 COG5167 VID27 Protein involved 95.5 1.1 2.3E-05 45.1 16.5 140 328-471 478-632 (776)
427 COG5276 Uncharacterized conser 95.4 2.3 5.1E-05 39.8 23.2 151 317-473 86-243 (370)
428 KOG3630 Nuclear pore complex, 95.4 0.14 3.1E-06 55.8 11.1 139 359-499 100-256 (1405)
429 PF05096 Glu_cyclase_2: Glutam 95.4 2.4 5.2E-05 39.5 24.5 166 309-480 35-211 (264)
430 PF10168 Nup88: Nuclear pore c 95.4 4.7 0.0001 43.9 22.6 74 317-390 84-180 (717)
431 TIGR03074 PQQ_membr_DH membran 95.3 5.6 0.00012 43.7 24.2 191 284-479 194-484 (764)
432 PF12234 Rav1p_C: RAVE protein 95.3 1.3 2.8E-05 46.8 17.6 112 318-431 30-156 (631)
433 PLN02153 epithiospecifier prot 95.1 2.9 6.2E-05 41.4 19.2 150 370-524 85-291 (341)
434 TIGR03548 mutarot_permut cycli 94.9 4.3 9.3E-05 39.7 21.4 106 328-434 72-197 (323)
435 PF12234 Rav1p_C: RAVE protein 94.8 1.1 2.4E-05 47.3 15.5 107 362-470 32-155 (631)
436 PF06588 Muskelin_N: Muskelin 94.8 0.034 7.3E-07 48.4 3.8 36 62-97 164-199 (199)
437 PLN02193 nitrile-specifier pro 94.6 3.7 7.9E-05 42.6 19.2 192 328-525 175-418 (470)
438 KOG2377 Uncharacterized conser 94.4 3.9 8.6E-05 40.7 17.1 128 290-420 39-172 (657)
439 KOG4499 Ca2+-binding protein R 94.2 2.4 5.1E-05 38.4 13.8 135 272-411 108-263 (310)
440 KOG2377 Uncharacterized conser 94.1 1.5 3.2E-05 43.5 13.6 147 370-521 32-189 (657)
441 TIGR03118 PEPCTERM_chp_1 conse 94.1 5.4 0.00012 37.8 21.0 199 320-520 25-282 (336)
442 TIGR03548 mutarot_permut cycli 94.1 5.7 0.00012 38.9 18.4 104 370-473 72-196 (323)
443 PRK13684 Ycf48-like protein; P 94.0 6.7 0.00015 38.6 24.4 229 272-512 45-283 (334)
444 KOG2280 Vacuolar assembly/sort 93.9 3.3 7E-05 43.9 16.3 180 293-481 63-255 (829)
445 PLN02153 epithiospecifier prot 93.8 7.5 0.00016 38.4 25.1 187 283-473 32-286 (341)
446 KOG1916 Nuclear protein, conta 93.7 0.055 1.2E-06 57.4 3.4 164 268-434 128-326 (1283)
447 PRK13684 Ycf48-like protein; P 93.4 8.6 0.00019 37.8 25.0 151 359-516 172-330 (334)
448 KOG2280 Vacuolar assembly/sort 93.4 6 0.00013 42.0 17.2 168 262-434 73-249 (829)
449 KOG1898 Splicing factor 3b, su 93.1 12 0.00026 41.4 19.2 174 340-518 854-1049(1205)
450 KOG1983 Tomosyn and related SN 93.1 3.7 8.1E-05 46.5 16.6 226 274-521 37-268 (993)
451 PLN02193 nitrile-specifier pro 92.9 13 0.00028 38.6 20.2 146 328-473 228-412 (470)
452 COG5167 VID27 Protein involved 92.9 2.3 5E-05 42.8 12.8 143 283-432 478-633 (776)
453 PLN00033 photosystem II stabil 92.8 12 0.00025 37.8 18.3 144 320-468 241-396 (398)
454 PF08728 CRT10: CRT10; InterP 92.7 3.2 6.8E-05 44.5 14.4 114 403-516 102-245 (717)
455 PF14781 BBS2_N: Ciliary BBSom 92.6 5.1 0.00011 33.0 12.5 108 366-478 5-131 (136)
456 KOG2247 WD40 repeat-containing 92.5 0.018 3.8E-07 57.0 -2.1 137 321-459 38-177 (615)
457 PF07569 Hira: TUP1-like enhan 92.5 1 2.2E-05 41.2 9.5 64 409-473 18-97 (219)
458 PF10168 Nup88: Nuclear pore c 92.5 4.5 9.8E-05 44.0 15.7 29 359-388 84-112 (717)
459 COG5276 Uncharacterized conser 92.5 9.7 0.00021 35.9 23.7 226 281-517 135-369 (370)
460 COG5290 IkappaB kinase complex 92.0 3.3 7.2E-05 44.0 13.2 90 363-453 250-348 (1243)
461 PF07995 GSDH: Glucose / Sorbo 91.7 14 0.00031 36.3 17.3 100 320-421 4-133 (331)
462 KOG4460 Nuclear pore complex, 91.6 7.3 0.00016 39.6 14.5 92 361-473 105-200 (741)
463 PF10313 DUF2415: Uncharacteri 91.3 0.73 1.6E-05 29.5 4.9 30 403-432 2-34 (43)
464 PLN00033 photosystem II stabil 91.3 18 0.00038 36.5 25.4 144 363-514 242-396 (398)
465 PF14781 BBS2_N: Ciliary BBSom 91.2 7.6 0.00017 32.0 12.5 108 407-518 4-126 (136)
466 PF14655 RAB3GAP2_N: Rab3 GTPa 91.0 2.8 6.1E-05 42.2 11.4 52 309-360 299-350 (415)
467 PF07250 Glyoxal_oxid_N: Glyox 90.9 2.9 6.3E-05 38.7 10.6 134 383-520 48-200 (243)
468 KOG1520 Predicted alkaloid syn 90.7 13 0.00028 36.5 15.0 78 420-503 196-280 (376)
469 PF10313 DUF2415: Uncharacteri 90.6 0.98 2.1E-05 29.0 5.0 31 318-348 1-34 (43)
470 KOG1916 Nuclear protein, conta 90.6 0.32 6.9E-06 51.9 4.5 114 273-390 181-324 (1283)
471 COG3823 Glutamine cyclotransfe 90.5 12 0.00027 33.3 14.6 170 283-459 55-247 (262)
472 PF09398 FOP_dimer: FOP N term 89.6 0.68 1.5E-05 34.5 4.3 31 65-95 20-50 (81)
473 PRK14131 N-acetylneuraminic ac 89.6 24 0.00053 35.3 22.2 96 283-380 38-149 (376)
474 PF07569 Hira: TUP1-like enhan 89.1 3.5 7.5E-05 37.8 9.6 67 367-434 18-98 (219)
475 COG1520 FOG: WD40-like repeat 89.0 26 0.00057 35.0 20.9 195 283-483 68-279 (370)
476 KOG4460 Nuclear pore complex, 89.0 10 0.00023 38.5 13.1 27 319-345 105-131 (741)
477 TIGR03547 muta_rot_YjhT mutatr 88.8 26 0.00056 34.6 22.6 53 328-380 63-128 (346)
478 PF14761 HPS3_N: Hermansky-Pud 88.8 18 0.00038 32.7 14.5 136 330-470 29-213 (215)
479 KOG1900 Nuclear pore complex, 88.7 6.2 0.00013 44.6 12.6 137 336-473 96-274 (1311)
480 PF10214 Rrn6: RNA polymerase 88.7 44 0.00096 37.1 24.9 244 280-532 1-294 (765)
481 PF03088 Str_synth: Strictosid 88.4 4.5 9.8E-05 30.9 8.2 41 420-460 34-75 (89)
482 PF14727 PHTB1_N: PTHB1 N-term 88.4 31 0.00067 35.0 28.6 273 236-519 38-362 (418)
483 PF11715 Nup160: Nucleoporin N 88.2 2.6 5.7E-05 44.7 9.5 74 282-356 156-257 (547)
484 PF05935 Arylsulfotrans: Aryls 88.0 22 0.00047 37.0 15.8 179 337-520 126-370 (477)
485 TIGR03606 non_repeat_PQQ dehyd 88.0 34 0.00074 35.1 19.7 104 318-421 30-165 (454)
486 COG5290 IkappaB kinase complex 87.7 12 0.00026 40.0 13.1 69 404-473 249-326 (1243)
487 PF10395 Utp8: Utp8 family; I 87.5 44 0.00095 35.8 22.3 153 359-518 129-306 (670)
488 KOG2247 WD40 repeat-containing 87.4 0.097 2.1E-06 51.9 -1.7 142 362-510 37-181 (615)
489 PF13449 Phytase-like: Esteras 87.2 31 0.00068 33.7 18.2 146 272-418 19-231 (326)
490 PF12768 Rax2: Cortical protei 86.9 13 0.00028 35.4 12.2 95 340-434 17-126 (281)
491 PF02333 Phytase: Phytase; In 86.6 36 0.00079 33.8 24.2 188 328-519 67-292 (381)
492 TIGR03606 non_repeat_PQQ dehyd 86.5 42 0.0009 34.5 19.6 108 271-379 28-165 (454)
493 PF14761 HPS3_N: Hermansky-Pud 86.3 25 0.00054 31.7 13.5 99 372-473 29-165 (215)
494 COG3877 Uncharacterized protei 86.1 3.4 7.5E-05 31.8 6.2 78 61-158 42-121 (122)
495 PF12768 Rax2: Cortical protei 86.0 22 0.00048 33.8 13.3 92 380-471 15-123 (281)
496 PF13449 Phytase-like: Esteras 86.0 36 0.00078 33.3 17.6 141 318-458 20-231 (326)
497 PF10395 Utp8: Utp8 family; I 85.8 54 0.0012 35.1 23.1 159 317-481 129-314 (670)
498 TIGR03547 muta_rot_YjhT mutatr 85.8 38 0.00083 33.4 18.2 41 339-379 168-209 (346)
499 COG4247 Phy 3-phytase (myo-ino 85.3 31 0.00067 31.9 13.0 149 362-517 58-232 (364)
500 PF09862 DUF2089: Protein of u 85.2 2.1 4.6E-05 34.1 5.0 78 61-158 34-113 (113)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-77 Score=550.05 Aligned_cols=473 Identities=47% Similarity=0.814 Sum_probs=441.5
Q ss_pred CCCccccccccCCcchHHHHHHHHHHHHhcChHHHHHHHhhhcCcccCCHHHHHHHHHHhcCChHHHHHHhhcCCCCChh
Q 009569 48 SQGDEEKIGSKGVIKKSEFIKIITRALYSLGYDKSGALLEEESGIPMHSSVVNQFMQQVMDGYWDESIITLHMIGLSDET 127 (532)
Q Consensus 48 ~~~~~~~~~~~~~i~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~~~~~~~~~~~i~~G~w~~~~~~l~~l~~~~~~ 127 (532)
++|..+.+|+||.|.+.|++||++|+|+++||.+|+.+||.|+|+-+++..+..|.+++++|+|++++..+..++++++.
T Consensus 2 ~ng~~~~l~~k~likk~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~de~ 81 (519)
T KOG0293|consen 2 QNGSNEILGSKGLIKKGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFEDER 81 (519)
T ss_pred CCcchhhhhhhceeccchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcchh
Confidence 46677789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChhHHHHHHhhccccCccChhhHHHhhhccccCCcccccCCCCCCcccHHHHHHHHHHH
Q 009569 128 AVKSASFLILEQKFLELLRRDKVSAALNSLRSEIVPLQINMSRVHELASCIISPSKSLTLGDSGQDTEDEKSRSKFLAKL 207 (532)
Q Consensus 128 ~~~~~~~~i~~q~~lelle~~~~~~a~~~L~~~l~pl~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~l 207 (532)
..+.+.|++.+|+|||++..+....|+..||+.+.++..+.+++++|++.+..++.....+... .......|.++++++
T Consensus 82 ~~~ea~fLv~kQ~fLEf~k~~~is~al~~l~~~~~~lr~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~el 160 (519)
T KOG0293|consen 82 NRKEAMFLVNKQIFLEFLKTGSISHALPVLRNPVLYLRKNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDEL 160 (519)
T ss_pred hhHHHHHHHHHHHHHHHHhhccHhhhhHhhhcchhhhhhhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998777664332222211 233456899999999
Q ss_pred HhcCCCCccCCcchHHHHHHHHHHhcccccccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEE
Q 009569 208 QKLLPASVVIPEKRLEHLVEKALDVQRDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYL 287 (532)
Q Consensus 208 ~~~~~~~~~~p~~rl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~l 287 (532)
++.+|+.+++|+.||+.|++||+.+|.+.|+||++-+ .++++.|+.|....+|.+..+++..|+++||.+.||++|+||
T Consensus 161 skyi~p~illP~rRLehLl~qAv~~Q~d~cvyhnsld-svsll~Dh~c~~~qip~qt~qil~~htdEVWfl~FS~nGkyL 239 (519)
T KOG0293|consen 161 SKYIPPNILLPKRRLEHLLEQAVKYQRDSCVYHNSLD-SVSLLSDHFCGRLQIPSQTWQILQDHTDEVWFLQFSHNGKYL 239 (519)
T ss_pred HhhCCHhhcCChHHHHHHHHHHHHHHHhHhHHhcccc-hhhhhhhcccCcccCCchhhhhHhhCCCcEEEEEEcCCCeeE
Confidence 9999999999999999999999999999999999877 499999999999999999999999999999999999999999
Q ss_pred EEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeecc-CCceEEEE
Q 009569 288 ASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT-GVGLISCG 366 (532)
Q Consensus 288 as~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~ 366 (532)
|+++.|.+..+|++..+..++..+++.+|..+|..+.||||.++|++|+.+..+.+||+.+|.+...+... ...+.+++
T Consensus 240 AsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~ 319 (519)
T KOG0293|consen 240 ASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCA 319 (519)
T ss_pred eeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeE
Confidence 99999999999999988888899999999999999999999999999999999999999999998887643 67899999
Q ss_pred EeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc-eeeeecCCcee
Q 009569 367 WFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVIT 445 (532)
Q Consensus 367 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~-~~~~~~~~~i~ 445 (532)
|.|||..+++|+.|+.|..||+++.....|.+.....|.+++.++||+++++.+.|..|++|+..+.. ...+....+|+
T Consensus 320 W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~it 399 (519)
T KOG0293|consen 320 WCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPIT 399 (519)
T ss_pred EccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCcee
Confidence 99999999999999999999999999999998888899999999999999999999999999998887 55788889999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCCcee
Q 009569 446 SFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPFAKK 523 (532)
Q Consensus 446 ~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~~~~ 523 (532)
++++|.|++++++.-.+..|++||+... ..++.|.||....++|+.||+..+..+|++||+|++||||+..+++...
T Consensus 400 s~~iS~d~k~~LvnL~~qei~LWDl~e~-~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~ 476 (519)
T KOG0293|consen 400 SFSISKDGKLALVNLQDQEIHLWDLEEN-KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLA 476 (519)
T ss_pred EEEEcCCCcEEEEEcccCeeEEeecchh-hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeE
Confidence 9999999999999999999999999977 9999999999999999999999999999999999999999999987543
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-57 Score=406.35 Aligned_cols=448 Identities=20% Similarity=0.313 Sum_probs=375.6
Q ss_pred cchHHHHHHHHHHHHhcChHHHHHHHhhhcCcccCCH-HHHHHHHHHhcCChHHHHHHhhcCCCCChhHHHHHHHHHHHH
Q 009569 61 IKKSEFIKIITRALYSLGYDKSGALLEEESGIPMHSS-VVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSASFLILEQ 139 (532)
Q Consensus 61 i~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~~~-~~~~~~~~i~~G~w~~~~~~l~~l~~~~~~~~~~~~~~i~~q 139 (532)
|.+.+|+|||.|||+|+.+..+.++||+|+++++|+. .++.|.+.|.+|+||.++..+++|++|+..+.. +|||
T Consensus 5 iessdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsLKLP~kkL~d-----LYEq 79 (508)
T KOG0275|consen 5 IESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSLKLPDKKLID-----LYEQ 79 (508)
T ss_pred eecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhccCchhHHHH-----HHHH
Confidence 4567999999999999999999999999999999986 799999999999999999999999999976655 9999
Q ss_pred HHHHHHhcCChhHHHHHHhhccccCc----cChhhHHHhhhccccCCcccccCCCCCCc-ccHHHHHHHHHHHHhcCCCC
Q 009569 140 KFLELLRRDKVSAALNSLRSEIVPLQ----INMSRVHELASCIISPSKSLTLGDSGQDT-EDEKSRSKFLAKLQKLLPAS 214 (532)
Q Consensus 140 ~~lelle~~~~~~a~~~L~~~l~pl~----~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~r~~l~~~l~~~~~~~ 214 (532)
..+||+|.++...|..+||+. .|+. .+++|+.+|..++..+..+ ....|++ ..++.|..+.+.+..+.
T Consensus 80 ivlEliELREL~tAR~~lRQT-dpM~~lKQ~~peRy~~lE~ll~R~YFD---p~EaY~dssKEkrRa~IAQ~ls~EV--- 152 (508)
T KOG0275|consen 80 IVLELIELRELGTARSLLRQT-DPMIMLKQIQPERYIRLENLLNRSYFD---PREAYGDSSKEKRRAVIAQALSGEV--- 152 (508)
T ss_pred HHHHHHHHHhhhHHHHHHhcc-CceehhhccChHHHHHHHHHhcccccC---hhhhcCcchHHHHHHHHHHHhcCce---
Confidence 999999999999999999964 5654 4789999999999887654 2223333 45667777888887665
Q ss_pred ccCCcchHHHHHHHHHHhcccccccccCCCCCceeeccCCcc----CCCCCcceeEEcc-cccccEEEEEEccCCCEEEE
Q 009569 215 VVIPEKRLEHLVEKALDVQRDSCLFHNTSDSDFSLYSDHQCG----RNRIPSQTLQILE-AHSDEVWFLQFSHDGKYLAS 289 (532)
Q Consensus 215 ~~~p~~rl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~-~h~~~V~~v~~s~~g~~las 289 (532)
..+||.||..++.|+++||....++.++. .+.+|...... .+..|....+.++ +....+-|..|||||+||++
T Consensus 153 ~VVppSRLlaLlGQaLKWQqHQGLLPPGt--~iDLFRGkAA~K~~~Ee~~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvs 230 (508)
T KOG0275|consen 153 HVVPPSRLLALLGQALKWQQHQGLLPPGT--TIDLFRGKAAMKDQEEERYPTQLARSIKFGQKSHVECARFSPDGQYLVS 230 (508)
T ss_pred EEcChHHHHHHHHHHhhhHhhcCCCCCCc--eeeeccchhhhhhhHhhhchHHhhhheecccccchhheeeCCCCceEee
Confidence 78899999999999999999998886543 45566544322 2455666655555 55677899999999999999
Q ss_pred EeCCCeEEEEEeecCCe-----eEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEee-ccCCceE
Q 009569 290 SSKDQSAIIWEVKEDGQ-----VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE-KTGVGLI 363 (532)
Q Consensus 290 ~s~dg~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~ 363 (532)
|+.||.|.+||..+++- +.....+.-+..+|.|++||.|...+++|+.||.|++|.+++|.|++.|. .|...|+
T Consensus 231 gSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt 310 (508)
T KOG0275|consen 231 GSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVT 310 (508)
T ss_pred ccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCee
Confidence 99999999999987632 12224456688999999999999999999999999999999999999997 8899999
Q ss_pred EEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc----eeeee
Q 009569 364 SCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF----ERWIE 439 (532)
Q Consensus 364 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~----~~~~~ 439 (532)
|+.|+.|+..+++++.|.++++.-+.++++.....+|+..|+...|++||..+++++.||+|++|+.++.. ....+
T Consensus 311 ~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~ 390 (508)
T KOG0275|consen 311 CLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG 390 (508)
T ss_pred EEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC
Confidence 99999999999999999999999999877766666777799999999999999999999999999999877 23345
Q ss_pred cCCceeEEEEcCC-CCEEEEEecCCeEEEEecCCCCcceeEEeccc-cceEEEEEccCCCCCcEEEEEeCCCcEEEEeCC
Q 009569 440 EEEVITSFSLSKD-NKYLLVNLINQEIHLWSIESDPKLVSRYKGHK-RARFVIRSCFGGFEQAFIASGSEDSQVNIFLSF 517 (532)
Q Consensus 440 ~~~~i~~~~~sp~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~ 517 (532)
.+.+|.++-.-|. ...+++|...++|+|.++.. +.+++|.... ...-.+.++. +|.|.++++.++|+.+|.|.+.
T Consensus 391 ~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG--QvVrsfsSGkREgGdFi~~~l-SpkGewiYcigED~vlYCF~~~ 467 (508)
T KOG0275|consen 391 TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG--QVVRSFSSGKREGGDFINAIL-SPKGEWIYCIGEDGVLYCFSVL 467 (508)
T ss_pred CcccceeEEEcCCCCceEEEEcCCCeEEEEeccc--eEEeeeccCCccCCceEEEEe-cCCCcEEEEEccCcEEEEEEee
Confidence 6678888888774 47888999999999999875 6888886443 2333455555 9999999999999999999999
Q ss_pred CCCceeee
Q 009569 518 SPFAKKIK 525 (532)
Q Consensus 518 ~~~~~~~~ 525 (532)
+|.+....
T Consensus 468 sG~LE~tl 475 (508)
T KOG0275|consen 468 SGKLERTL 475 (508)
T ss_pred cCceeeee
Confidence 99876543
No 3
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-42 Score=325.28 Aligned_cols=241 Identities=20% Similarity=0.357 Sum_probs=216.1
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcE
Q 009569 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351 (532)
Q Consensus 272 ~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 351 (532)
+..|++++|+.+|..||+|+.||.+++|+... ....++..|.++|.++.|+.+|+||++++.|+++.+||..++..
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G----~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG----NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCc----hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence 36799999999999999999999999999873 35677889999999999999999999999999999999999999
Q ss_pred EEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCC-CeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEEC
Q 009569 352 LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDR 430 (532)
Q Consensus 352 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~ 430 (532)
.+.+..|..+-..+.|-. ...|++++.|+.|+++.+.. .+..++.+ |.+.|.++.|+|.|.+|++++.|++++||..
T Consensus 311 ~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~ 388 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWSM 388 (524)
T ss_pred EEeeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeec-ccCceEEEEECCCCceEEEecCCCeeEeeec
Confidence 999999988877888974 56789999999999999975 45555555 5569999999999999999999999999997
Q ss_pred CCCc--eeeeecCCceeEEEEcCCC---------CEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCC
Q 009569 431 EANF--ERWIEEEEVITSFSLSKDN---------KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQ 499 (532)
Q Consensus 431 ~~~~--~~~~~~~~~i~~~~~sp~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~ 499 (532)
.... ..+..|...|..+.|+|+| ..+++++.|++|++||+..+ .++.+|..|..+++. +.| +|+|
T Consensus 389 ~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-v~i~~f~kH~~pVys--vaf-S~~g 464 (524)
T KOG0273|consen 389 GQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-VPIHTLMKHQEPVYS--VAF-SPNG 464 (524)
T ss_pred CCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-ceeEeeccCCCceEE--EEe-cCCC
Confidence 6655 7778899999999999965 47899999999999999999 999999999999776 566 9999
Q ss_pred cEEEEEeCCCcEEEEeCCCCCce
Q 009569 500 AFIASGSEDSQVNIFLSFSPFAK 522 (532)
Q Consensus 500 ~~l~sgs~dg~i~iw~~~~~~~~ 522 (532)
+++|+|+.||.|.||+..+++..
T Consensus 465 ~ylAsGs~dg~V~iws~~~~~l~ 487 (524)
T KOG0273|consen 465 RYLASGSLDGCVHIWSTKTGKLV 487 (524)
T ss_pred cEEEecCCCCeeEeccccchhee
Confidence 99999999999999999998654
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.7e-42 Score=312.22 Aligned_cols=266 Identities=19% Similarity=0.359 Sum_probs=232.5
Q ss_pred eeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCC
Q 009569 248 SLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327 (532)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~ 327 (532)
.+|......+-+...++...+.||.++|.|++|+|+|..||+|+.|.++++||+.+. .+..+.++|...|.|++|+|
T Consensus 91 lvyqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te---Tp~~t~KgH~~WVlcvawsP 167 (480)
T KOG0271|consen 91 LVYQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE---TPLFTCKGHKNWVLCVAWSP 167 (480)
T ss_pred EEeccchhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC---CcceeecCCccEEEEEEECC
Confidence 445555544555557788899999999999999999999999999999999999876 46688899999999999999
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEE-EEeeccCCceEEEEEee-----CCCeEEEEeCCCcEEEEECCCCeEEEeecCcc
Q 009569 328 NDHQLLTCGQEEAIRRWDVNSGECL-HVYEKTGVGLISCGWFL-----DGGGIFAGMTDKSICLWDLDGRELESWKGQKT 401 (532)
Q Consensus 328 ~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 401 (532)
||+.|++|+.||+|++||.++|+++ ..+.+|...|++++|.| ..+++++++.||.|+|||+..+........|+
T Consensus 168 Dgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT 247 (480)
T KOG0271|consen 168 DGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT 247 (480)
T ss_pred CcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc
Confidence 9999999999999999999998875 67899999999999976 57789999999999999999888877777787
Q ss_pred CceEEEEEeeCCCEEEEEECCCeEEEEECCCCc-----------------------------------------------
Q 009569 402 LRISDMAITDDGKRIISICREAAILLLDREANF----------------------------------------------- 434 (532)
Q Consensus 402 ~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~----------------------------------------------- 434 (532)
..|+|+.|--+| +|++++.|++|++|+...+.
T Consensus 248 ~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~ 326 (480)
T KOG0271|consen 248 ASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALE 326 (480)
T ss_pred cceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHH
Confidence 899999997654 78888999999999876431
Q ss_pred ----------------------------------eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEE
Q 009569 435 ----------------------------------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRY 480 (532)
Q Consensus 435 ----------------------------------~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 480 (532)
.+..+|..-|+.+.||||++++++++.|..|++||.+++ +.+.+|
T Consensus 327 rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG-k~lasf 405 (480)
T KOG0271|consen 327 RYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG-KFLASF 405 (480)
T ss_pred HHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc-chhhhh
Confidence 112236677899999999999999999999999999999 999999
Q ss_pred eccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCCc
Q 009569 481 KGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPFA 521 (532)
Q Consensus 481 ~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~~ 521 (532)
+||-..+|. ++| +.|.++|++||.|.++++|++++.++
T Consensus 406 RGHv~~VYq--vaw-saDsRLlVS~SkDsTLKvw~V~tkKl 443 (480)
T KOG0271|consen 406 RGHVAAVYQ--VAW-SADSRLLVSGSKDSTLKVWDVRTKKL 443 (480)
T ss_pred hhccceeEE--EEe-ccCccEEEEcCCCceEEEEEeeeeee
Confidence 999999777 455 88999999999999999999998654
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.3e-41 Score=312.65 Aligned_cols=272 Identities=19% Similarity=0.257 Sum_probs=240.2
Q ss_pred cccccCCCCCceeeccCCccCCCCC-cceeEEcccccccEEEEEEccC--CCEEEEEeCCCeEEEEEeecCCeeEEEEEe
Q 009569 237 CLFHNTSDSDFSLYSDHQCGRNRIP-SQTLQILEAHSDEVWFLQFSHD--GKYLASSSKDQSAIIWEVKEDGQVSLKHRL 313 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~h~~~V~~v~~s~~--g~~las~s~dg~i~iwd~~~~~~~~~~~~~ 313 (532)
|.|+..++..++..-+..+..|..| ...+++|.+|.+.|.++.|+|. +..+|||+.||++++|++.+. .++..+
T Consensus 181 ~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e---~~l~~l 257 (459)
T KOG0272|consen 181 CSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE---TPLQDL 257 (459)
T ss_pred eEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC---cchhhh
Confidence 4444444333333333333334433 3678899999999999999996 679999999999999999865 567889
Q ss_pred ecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeE
Q 009569 314 SGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL 393 (532)
Q Consensus 314 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 393 (532)
.+|...|..++|+|+|++|+|++.|.+-++||++++..+...++|...|.+++|+|||..+++|+.|..-+|||++++..
T Consensus 258 ~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~ 337 (459)
T KOG0272|consen 258 EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRC 337 (459)
T ss_pred hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred EEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcC-CCCEEEEEecCCeEEEEec
Q 009569 394 ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSK-DNKYLLVNLINQEIHLWSI 470 (532)
Q Consensus 394 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~i~iwd~ 470 (532)
.-+...|...|.+|+|+|+|..+++|+.|++++|||++... ..+..|..-|+.+.|+| .|.+|++++.|++++||..
T Consensus 338 im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 338 IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecC
Confidence 77777788899999999999999999999999999999877 67778999999999999 7899999999999999999
Q ss_pred CCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEe
Q 009569 471 ESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFL 515 (532)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~ 515 (532)
.+. .+++++.||...+.. +.. ++|+.+|+|++.|.++++|.
T Consensus 418 ~~~-~~~ksLaGHe~kV~s--~Di-s~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 418 RTW-SPLKSLAGHEGKVIS--LDI-SPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCc-ccchhhcCCccceEE--EEe-ccCCceEEEeccCceeeecc
Confidence 988 999999999998555 444 89999999999999999996
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-40 Score=301.04 Aligned_cols=265 Identities=22% Similarity=0.440 Sum_probs=232.5
Q ss_pred cccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecC
Q 009569 237 CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h 316 (532)
.+.++++|..+++|+..+ ..++.+.++|...|.|++|+|||+.||+|+.||+|++||..+++. .-..+.+|
T Consensus 129 ~l~tGsGD~TvR~WD~~T-------eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~--~g~~l~gH 199 (480)
T KOG0271|consen 129 RLVTGSGDTTVRLWDLDT-------ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ--IGRALRGH 199 (480)
T ss_pred eEEecCCCceEEeeccCC-------CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc--ccccccCc
Confidence 455778888888887654 567889999999999999999999999999999999999998764 46788999
Q ss_pred CCCeEEEEeCC-----CCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCC
Q 009569 317 RKPVFTVSWSP-----NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR 391 (532)
Q Consensus 317 ~~~v~~l~~s~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 391 (532)
...|++++|.| ..++|++++.||.|+|||+..+.++..+.+|..+|+|++|--+ .++++|+.|++|++|+...+
T Consensus 200 ~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG 278 (480)
T KOG0271|consen 200 KKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDG 278 (480)
T ss_pred ccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccch
Confidence 99999999987 5679999999999999999999999999999999999999744 48889999999999987531
Q ss_pred eEEE--------------------------------------------------------------------e-------
Q 009569 392 ELES--------------------------------------------------------------------W------- 396 (532)
Q Consensus 392 ~~~~--------------------------------------------------------------------~------- 396 (532)
.+.. |
T Consensus 279 ~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk 358 (480)
T KOG0271|consen 279 KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK 358 (480)
T ss_pred hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc
Confidence 1100 0
Q ss_pred ----ecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEec
Q 009569 397 ----KGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (532)
Q Consensus 397 ----~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~ 470 (532)
...|..-|+.+.|+||++++++++.|..|++||-++++ ..+.+|-.+|..++|+.|.++|++|+.|.++++||+
T Consensus 359 pi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V 438 (480)
T KOG0271|consen 359 PITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDV 438 (480)
T ss_pred chhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEe
Confidence 00344468999999999999999999999999999999 778889999999999999999999999999999999
Q ss_pred CCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEe
Q 009569 471 ESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFL 515 (532)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~ 515 (532)
++. ++...+.||...++.+. | +|||..+++|+.|..+++|.
T Consensus 439 ~tk-Kl~~DLpGh~DEVf~vD--w-spDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 439 RTK-KLKQDLPGHADEVFAVD--W-SPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eee-eecccCCCCCceEEEEE--e-cCCCceeecCCCceEEEeec
Confidence 998 88999999999977744 4 99999999999999999995
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.9e-39 Score=297.94 Aligned_cols=244 Identities=18% Similarity=0.195 Sum_probs=226.5
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCC--CCEEEEeeCCCcEEEEECC
Q 009569 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN--DHQLLTCGQEEAIRRWDVN 347 (532)
Q Consensus 270 ~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~ 347 (532)
+-+.+|..+.||+|++.|||||.+|.++||+..+. ..+.++.+|...|.++.|+|. +..++||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~---~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC---NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCc---ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 46678999999999999999999999999999855 577899999999999999996 5699999999999999999
Q ss_pred CCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEE
Q 009569 348 SGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILL 427 (532)
Q Consensus 348 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~i 427 (532)
+...+..+.+|...|..++|+|+|++|++++.|.+-++||++++...-...+|...|.+++|.|||..+++|+.|..-+|
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV 329 (459)
T ss_pred CCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhe
Confidence 99999999999999999999999999999999999999999998877777788889999999999999999999999999
Q ss_pred EECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCC-CCcEEEE
Q 009569 428 LDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF-EQAFIAS 504 (532)
Q Consensus 428 wd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~-d~~~l~s 504 (532)
||++++. ..+.+|..+|.+|+|+|+|..|++|+.|++++|||++.. ..+.++.+|.+-+.- ++| +| .|.+|+|
T Consensus 330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r-~~ly~ipAH~nlVS~--Vk~-~p~~g~fL~T 405 (459)
T KOG0272|consen 330 WDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR-SELYTIPAHSNLVSQ--VKY-SPQEGYFLVT 405 (459)
T ss_pred eecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc-ccceecccccchhhh--eEe-cccCCeEEEE
Confidence 9999998 666789999999999999999999999999999999998 789999999987544 667 76 7899999
Q ss_pred EeCCCcEEEEeCCCCC
Q 009569 505 GSEDSQVNIFLSFSPF 520 (532)
Q Consensus 505 gs~dg~i~iw~~~~~~ 520 (532)
++.|++++||...+..
T Consensus 406 asyD~t~kiWs~~~~~ 421 (459)
T KOG0272|consen 406 ASYDNTVKIWSTRTWS 421 (459)
T ss_pred cccCcceeeecCCCcc
Confidence 9999999999988754
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-37 Score=270.08 Aligned_cols=272 Identities=17% Similarity=0.284 Sum_probs=234.9
Q ss_pred cccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecC
Q 009569 237 CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h 316 (532)
.+++.+.|..+.+|..+.. +..-+.+++.++||...|..+..++||++.++++.|+++++||+.++ +..+.|.+|
T Consensus 30 ~l~sasrDk~ii~W~L~~d--d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g---~~t~~f~GH 104 (315)
T KOG0279|consen 30 ILVSASRDKTIIVWKLTSD--DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG---ESTRRFVGH 104 (315)
T ss_pred eEEEcccceEEEEEEeccC--ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC---cEEEEEEec
Confidence 4456677778888876654 44446789999999999999999999999999999999999999977 567889999
Q ss_pred CCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeecc--CCceEEEEEeeC--CCeEEEEeCCCcEEEEECCCCe
Q 009569 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT--GVGLISCGWFLD--GGGIFAGMTDKSICLWDLDGRE 392 (532)
Q Consensus 317 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~ 392 (532)
...|.+++|++|...+++|+.|.+|++|++... +..++..+ .+.|.|++|+|+ ...|++++.|+++++||+++.+
T Consensus 105 ~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~ 183 (315)
T KOG0279|consen 105 TKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ 183 (315)
T ss_pred CCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc
Confidence 999999999999999999999999999998754 44444433 788999999997 7889999999999999999999
Q ss_pred EEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc-eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecC
Q 009569 393 LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (532)
Q Consensus 393 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~ 471 (532)
+......|.+.++.++++|||..+++|+.||.+.+||++.++ .....+...|.+++|+|+.-+|+.+. +..|+|||+.
T Consensus 184 l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~ 262 (315)
T KOG0279|consen 184 LRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLE 262 (315)
T ss_pred hhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeecc-CCceEEEecc
Confidence 988888888899999999999999999999999999999988 77788999999999999876666665 5669999999
Q ss_pred CCCcceeEEecc-------ccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCC
Q 009569 472 SDPKLVSRYKGH-------KRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSF 517 (532)
Q Consensus 472 ~~~~~~~~~~~~-------~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~ 517 (532)
+. ..+..+... .....++.++| ++||..|++|-.|+.|++|.+.
T Consensus 263 ~~-~~v~~l~~d~~g~s~~~~~~~clslaw-s~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 263 SK-AVVEELKLDGIGPSSKAGDPICLSLAW-SADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ch-hhhhhccccccccccccCCcEEEEEEE-cCCCcEEEeeecCCcEEEEEee
Confidence 87 666655421 22455677777 9999999999999999999875
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.1e-36 Score=262.37 Aligned_cols=252 Identities=20% Similarity=0.297 Sum_probs=221.4
Q ss_pred eeEEcccccccEEEEEEccC-CCEEEEEeCCCeEEEEEeecCCe--eEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCc
Q 009569 264 TLQILEAHSDEVWFLQFSHD-GKYLASSSKDQSAIIWEVKEDGQ--VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (532)
Q Consensus 264 ~~~~l~~h~~~V~~v~~s~~-g~~las~s~dg~i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 340 (532)
...++++|++.|+.++..+. ...+++++.|.++.+|++..... -.+.+.+.+|...|..+..++||++.++++.|++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 45578999999999999996 56889999999999999975422 2357889999999999999999999999999999
Q ss_pred EEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCc-cCceEEEEEeeC--CCEEE
Q 009569 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK-TLRISDMAITDD--GKRII 417 (532)
Q Consensus 341 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~--~~~l~ 417 (532)
+++||+.+++..+.|.+|...|.+++|++|++.+++|+.|++|++||+-+.......... ...|+|+.|+|+ ..+|+
T Consensus 87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Iv 166 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIV 166 (315)
T ss_pred EEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence 999999999999999999999999999999999999999999999999988777776654 669999999998 67999
Q ss_pred EEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccC
Q 009569 418 SICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495 (532)
Q Consensus 418 ~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (532)
+++.|++|++||+++.+ ..+.+|.+.++.+++||||...++|+.||.+.+||++.+ +.+..+.+ ... +..++|
T Consensus 167 s~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~-k~lysl~a-~~~--v~sl~f- 241 (315)
T KOG0279|consen 167 SASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG-KNLYSLEA-FDI--VNSLCF- 241 (315)
T ss_pred EccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC-ceeEeccC-CCe--EeeEEe-
Confidence 99999999999999988 788899999999999999999999999999999999998 66666553 343 344667
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCc
Q 009569 496 GFEQAFIASGSEDSQVNIFLSFSPFA 521 (532)
Q Consensus 496 s~d~~~l~sgs~dg~i~iw~~~~~~~ 521 (532)
+|+.-+|+.+ .+..|+|||+.++..
T Consensus 242 spnrywL~~a-t~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 242 SPNRYWLCAA-TATSIKIWDLESKAV 266 (315)
T ss_pred cCCceeEeec-cCCceEEEeccchhh
Confidence 9988777655 455699999998753
No 10
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.6e-37 Score=305.39 Aligned_cols=259 Identities=20% Similarity=0.360 Sum_probs=233.8
Q ss_pred CCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCC----------------------------eeE
Q 009569 257 RNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG----------------------------QVS 308 (532)
Q Consensus 257 ~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~----------------------------~~~ 308 (532)
....|.-++.++..-...++|+.|++|+..||.|-.|..|++|.+.... .-.
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~ 442 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSG 442 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCc
Confidence 4667777888887777889999999999999999999999999987210 012
Q ss_pred EEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEEC
Q 009569 309 LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDL 388 (532)
Q Consensus 309 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 388 (532)
...++.+|.++|..+.|+|+.++|++|+.|+++++|.+.+..++..+++|..+|+.+.|+|.|-+|++++.|++-++|..
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 33558899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEE
Q 009569 389 DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIH 466 (532)
Q Consensus 389 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~ 466 (532)
...........|...|.|+.|+|+..++++|+.|.+|++||+.++. ..+.+|.++|++++|||+|++|++|+.||.|.
T Consensus 523 d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~ 602 (707)
T KOG0263|consen 523 DHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIK 602 (707)
T ss_pred ccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEE
Confidence 8766666666666799999999999999999999999999999988 77889999999999999999999999999999
Q ss_pred EEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC
Q 009569 467 LWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSP 519 (532)
Q Consensus 467 iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~ 519 (532)
+||+.++ .++..+.+|.+.++. +.| +.||..||+|+.|++|++||+...
T Consensus 603 iWDl~~~-~~v~~l~~Ht~ti~S--lsF-S~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 603 IWDLANG-SLVKQLKGHTGTIYS--LSF-SRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEEcCCC-cchhhhhcccCceeE--EEE-ecCCCEEEecCCCCeEEEEEchhh
Confidence 9999998 899999999777655 555 899999999999999999998764
No 11
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-36 Score=260.02 Aligned_cols=255 Identities=23% Similarity=0.395 Sum_probs=232.8
Q ss_pred CCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCC
Q 009569 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE 338 (532)
Q Consensus 259 ~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 338 (532)
..|.+....+..|.++|.++.|+-||+|.++++.|.+|++|+...+ .+++++.+|...|..++.+.|+..+++|+.|
T Consensus 4 e~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg---~liktYsghG~EVlD~~~s~Dnskf~s~GgD 80 (307)
T KOG0316|consen 4 ELPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG---ALIKTYSGHGHEVLDAALSSDNSKFASCGGD 80 (307)
T ss_pred cCcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc---ceeeeecCCCceeeeccccccccccccCCCC
Confidence 4567778899999999999999999999999999999999999866 5789999999999999999999999999999
Q ss_pred CcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCe--EEEeecCccCceEEEEEeeCCCEE
Q 009569 339 EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE--LESWKGQKTLRISDMAITDDGKRI 416 (532)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l 416 (532)
..|.+||+.+|+.++.+.+|.+.|+.+.|+.+...+++|+.|.++++||.++.. ..+........|.++..+ +..|
T Consensus 81 k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heI 158 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEI 158 (307)
T ss_pred ceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEE
Confidence 999999999999999999999999999999999999999999999999998643 344444444578888876 5589
Q ss_pred EEEECCCeEEEEECCCCceeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCC
Q 009569 417 ISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGG 496 (532)
Q Consensus 417 ~~~~~dg~I~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s 496 (532)
++|+.||+++.||++.+....-....+|+|++|++|++..++++.|+++++.|-.++ ++++.++||.+..+-+++++ .
T Consensus 159 vaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG-klL~sYkGhkn~eykldc~l-~ 236 (307)
T KOG0316|consen 159 VAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG-KLLKSYKGHKNMEYKLDCCL-N 236 (307)
T ss_pred EeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchh-HHHHHhcccccceeeeeeee-c
Confidence 999999999999999998666677889999999999999999999999999999998 99999999999999999999 7
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCC
Q 009569 497 FEQAFIASGSEDSQVNIFLSFSPF 520 (532)
Q Consensus 497 ~d~~~l~sgs~dg~i~iw~~~~~~ 520 (532)
.....+++||+||.|++||+....
T Consensus 237 qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 237 QSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred ccceeEEeccCCceEEEEEeccce
Confidence 778899999999999999998754
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9e-36 Score=257.79 Aligned_cols=273 Identities=16% Similarity=0.275 Sum_probs=236.2
Q ss_pred ccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCC
Q 009569 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317 (532)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (532)
+.+.+-|-.|++|...+ +.+..+++...+.|+.+...|+++.||+++. ..|++||+++++. .++.++.+|+
T Consensus 13 LvsA~YDhTIRfWqa~t-------G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np-~Pv~t~e~h~ 83 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQALT-------GICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP-NPVATFEGHT 83 (311)
T ss_pred EEeccCcceeeeeehhc-------CeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC-CceeEEeccC
Confidence 44566677788887665 7888999977889999999999999999875 5899999998754 4889999999
Q ss_pred CCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCe-EEEe
Q 009569 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE-LESW 396 (532)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~ 396 (532)
+.|.++.|..+|+.+++|+.||+++|||++...+.+.++ +..+|+++..+|+...|++|..+|.|++||+.... ....
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l 162 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL 162 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc
Confidence 999999999999999999999999999999987777776 56899999999999999999999999999998753 3344
Q ss_pred ecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--------eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEE
Q 009569 397 KGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLW 468 (532)
Q Consensus 397 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--------~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iw 468 (532)
.......|.+++..|||.+++.+...|..++|++-+.. .++..|...+..+.+|||+++|++++.|.+++||
T Consensus 163 iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iw 242 (311)
T KOG0315|consen 163 IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIW 242 (311)
T ss_pred CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEE
Confidence 44444589999999999999999999999999987654 4566789999999999999999999999999999
Q ss_pred ecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCCcee
Q 009569 469 SIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPFAKK 523 (532)
Q Consensus 469 d~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~~~~ 523 (532)
+..+.-+.-..+.+|..- +..+.| |.||.||++|+.|+.+++|++..++..+
T Consensus 243 n~~~~~kle~~l~gh~rW--vWdc~F-S~dg~YlvTassd~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 243 NTDDFFKLELVLTGHQRW--VWDCAF-SADGEYLVTASSDHTARLWDLSAGKEVR 294 (311)
T ss_pred ecCCceeeEEEeecCCce--EEeeee-ccCccEEEecCCCCceeecccccCceee
Confidence 998764556677888765 555788 9999999999999999999999987443
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.4e-35 Score=262.27 Aligned_cols=267 Identities=19% Similarity=0.283 Sum_probs=237.8
Q ss_pred cccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecC---CeeEEEEEe
Q 009569 237 CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED---GQVSLKHRL 313 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~---~~~~~~~~~ 313 (532)
.+.+.+.|+.+.+|+..+ ....+.+.-....|..++|+|.|+++|.|+-|+...||++.+. +.....+.+
T Consensus 69 ~ivSaSqDGklIvWDs~T-------tnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l 141 (343)
T KOG0286|consen 69 RIVSASQDGKLIVWDSFT-------TNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSREL 141 (343)
T ss_pred eEEeeccCCeEEEEEccc-------ccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeee
Confidence 456778888889997665 4455666667889999999999999999999999999999843 334667789
Q ss_pred ecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEee-CCCeEEEEeCCCcEEEEECCCCe
Q 009569 314 SGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRE 392 (532)
Q Consensus 314 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 392 (532)
.+|++.+.++.|-+ ...|+|++.|.+..+||+++++.+..|.+|.+.|.++.++| +++.+++|+.|+..++||++.+.
T Consensus 142 ~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~ 220 (343)
T KOG0286|consen 142 AGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ 220 (343)
T ss_pred cCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc
Confidence 99999999999987 56889999999999999999999999999999999999999 99999999999999999999888
Q ss_pred EEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc-eeeee---cCCceeEEEEcCCCCEEEEEecCCeEEEE
Q 009569 393 LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIE---EEEVITSFSLSKDNKYLLVNLINQEIHLW 468 (532)
Q Consensus 393 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~-~~~~~---~~~~i~~~~~sp~~~~l~~~~~dg~i~iw 468 (532)
..+.+..|...|+++.|.|+|.-+++|+.|++.++||++..+ ..... ...+|++++||..|++|++|..|..+.+|
T Consensus 221 c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vW 300 (343)
T KOG0286|consen 221 CVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVW 300 (343)
T ss_pred eeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEe
Confidence 777777777899999999999999999999999999999987 33333 34679999999999999999999999999
Q ss_pred ecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEe
Q 009569 469 SIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFL 515 (532)
Q Consensus 469 d~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~ 515 (532)
|.-.+ +.+..+.+|.+.+..+.+ +|||.-+++||.|..++||.
T Consensus 301 Dtlk~-e~vg~L~GHeNRvScl~~---s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 301 DTLKG-ERVGVLAGHENRVSCLGV---SPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ecccc-ceEEEeeccCCeeEEEEE---CCCCcEEEecchhHheeecC
Confidence 99888 899999999999777666 89999999999999999995
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-36 Score=276.68 Aligned_cols=262 Identities=19% Similarity=0.374 Sum_probs=234.3
Q ss_pred CCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeE
Q 009569 242 TSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVF 321 (532)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 321 (532)
+.+..+.+|+- .++++...++||.+.|..++|+..|+++|+++.|-.+++||..+ ...+++...+|...|.
T Consensus 127 s~d~tikv~D~-------~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~--~~~c~ks~~gh~h~vS 197 (406)
T KOG0295|consen 127 SEDATIKVFDT-------ETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDT--FFRCIKSLIGHEHGVS 197 (406)
T ss_pred cCCceEEEEEc-------cchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHH--HHHHHHHhcCccccee
Confidence 34455555543 34677889999999999999999999999999999999999973 3567778889999999
Q ss_pred EEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCcc
Q 009569 322 TVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKT 401 (532)
Q Consensus 322 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 401 (532)
++.|-|.|.++++|+.|.+|+.|++.+|-++.+|.+|...|..+..+.||..+++++.|.++++|-+.++........|.
T Consensus 198 ~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hE 277 (406)
T KOG0295|consen 198 SVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHE 277 (406)
T ss_pred eEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987777777777
Q ss_pred CceEEEEEeeC---------------CCEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCe
Q 009569 402 LRISDMAITDD---------------GKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQE 464 (532)
Q Consensus 402 ~~v~~~~~s~~---------------~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~ 464 (532)
.+|.+++|-|. +.++.+++.|++|++||+.++. .++.+|...|..++|+|.|+||+++..|++
T Consensus 278 h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt 357 (406)
T KOG0295|consen 278 HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT 357 (406)
T ss_pred cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc
Confidence 78999999764 2589999999999999999998 788899999999999999999999999999
Q ss_pred EEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeC
Q 009569 465 IHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLS 516 (532)
Q Consensus 465 i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~ 516 (532)
+++||+++. ++..++..|..-+.. ..| +.+..+++||+-|..+++|..
T Consensus 358 lrvwdl~~~-~cmk~~~ah~hfvt~--lDf-h~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 358 LRVWDLKNL-QCMKTLEAHEHFVTS--LDF-HKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEEEeccc-eeeeccCCCcceeEE--Eec-CCCCceEEeccccceeeeeec
Confidence 999999998 899999988887555 445 777789999999999999974
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.9e-34 Score=252.57 Aligned_cols=255 Identities=16% Similarity=0.246 Sum_probs=226.0
Q ss_pred ceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEE
Q 009569 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (532)
Q Consensus 263 ~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 342 (532)
+..++|+||.+.|.++.|++|.++|+++|.||.+.|||.-+.+ ..+.++-....|..++|+|.|+++++|+.|....
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn---K~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN---KVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccc---ceeEEecCceeEEEEEECCCCCeEEecCcCceeE
Confidence 4458899999999999999999999999999999999998764 3456666788999999999999999999999999
Q ss_pred EEECCCC------cEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEee-CCCE
Q 009569 343 RWDVNSG------ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD-DGKR 415 (532)
Q Consensus 343 iwd~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 415 (532)
||++.+. ...+.+.+|.+.+.++.|.+ ...|++++.|.++.+||+++++....+..|.+.|.++.++| +++.
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 9999865 34467889999999999986 56899999999999999999888888888888999999999 9999
Q ss_pred EEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEc
Q 009569 416 IISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSC 493 (532)
Q Consensus 416 l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 493 (532)
+++|+.|+..++||++.+. ..+.+|+..|++++|.|+|.-+++|+.|++.++||++.. +.+..|.......-+..+.
T Consensus 202 FvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD-~~~a~ys~~~~~~gitSv~ 280 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD-QELAVYSHDSIICGITSVA 280 (343)
T ss_pred EEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCC-cEEeeeccCcccCCceeEE
Confidence 9999999999999999988 889999999999999999999999999999999999998 7788887544333344566
Q ss_pred cCCCCCcEEEEEeCCCcEEEEeCCCCCcee
Q 009569 494 FGGFEQAFIASGSEDSQVNIFLSFSPFAKK 523 (532)
Q Consensus 494 ~~s~d~~~l~sgs~dg~i~iw~~~~~~~~~ 523 (532)
| +..|++|++|..|..+.+||.-.++..-
T Consensus 281 F-S~SGRlLfagy~d~~c~vWDtlk~e~vg 309 (343)
T KOG0286|consen 281 F-SKSGRLLFAGYDDFTCNVWDTLKGERVG 309 (343)
T ss_pred E-cccccEEEeeecCCceeEeeccccceEE
Confidence 6 9999999999999999999987665433
No 16
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-34 Score=257.61 Aligned_cols=253 Identities=22% Similarity=0.391 Sum_probs=223.1
Q ss_pred cceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcE
Q 009569 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (532)
Q Consensus 262 ~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 341 (532)
..++..+.+|.+.|+.+.|+|+|.+||||+.|..|.+|++.. ..+....+++|.++|..+.|.+|++.|++|+.|.+|
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g--dceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v 114 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG--DCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTV 114 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccc--cccceeeeccccceeEeeeeccCCCEEEEecCCceE
Confidence 355667889999999999999999999999999999999873 335667788999999999999999999999999999
Q ss_pred EEEECCCCcEEEEeeccCCceEEEEEeeCCC-eEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEE
Q 009569 342 RRWDVNSGECLHVYEKTGVGLISCGWFLDGG-GIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC 420 (532)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 420 (532)
+.||+++|++++.++.|...+.++.-..-|. ++.+|+.|+++++||++.+.......... .++++.|..++..+.+|+
T Consensus 115 ~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky-qltAv~f~d~s~qv~sgg 193 (338)
T KOG0265|consen 115 RGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY-QLTAVGFKDTSDQVISGG 193 (338)
T ss_pred EEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce-eEEEEEecccccceeecc
Confidence 9999999999999999999999888554444 45668899999999999877666665554 899999999999999999
Q ss_pred CCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCC---CcceeEEecccc--ceEEEEEc
Q 009569 421 REAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD---PKLVSRYKGHKR--ARFVIRSC 493 (532)
Q Consensus 421 ~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~--~~~~i~~~ 493 (532)
-|+.|++||++... ..+.+|..+|+.+..+|+|.++++.+.|.++++||++-. .+++..+.+|.. ....+.+.
T Consensus 194 Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs 273 (338)
T KOG0265|consen 194 IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS 273 (338)
T ss_pred ccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence 99999999998877 778899999999999999999999999999999999743 255778887754 34567788
Q ss_pred cCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 494 FGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 494 ~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
| +|++.++.+|+.|..+++||..+
T Consensus 274 w-sp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 274 W-SPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred c-cCCCCccccccccceEEEeeccc
Confidence 8 99999999999999999999887
No 17
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.9e-35 Score=278.04 Aligned_cols=261 Identities=21% Similarity=0.336 Sum_probs=234.8
Q ss_pred CCCCCcceeEEcccccccEEEEEEcc-CCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEe
Q 009569 257 RNRIPSQTLQILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC 335 (532)
Q Consensus 257 ~~~~~~~~~~~l~~h~~~V~~v~~s~-~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~ 335 (532)
...+|.+.+..+.||+..|+++.|.| .+.+|++++.|+.|+||++... ..+++++.+|..+|.+++|+++|..++++
T Consensus 199 rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~--~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~ 276 (503)
T KOG0282|consen 199 RCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD--RRCLRTFKGHRKPVRDASFNNCGTSFLSA 276 (503)
T ss_pred eeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC--cceehhhhcchhhhhhhhccccCCeeeee
Confidence 34578899999999999999999999 8999999999999999999863 36889999999999999999999999999
Q ss_pred eCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCC-CeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCC
Q 009569 336 GQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGK 414 (532)
Q Consensus 336 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 414 (532)
+.|+.|++||+++|+++..|. ....++|+.|+|++ +.+++|+.|+.|+.||++++++.+...+|-+.|..+.|-++|+
T Consensus 277 sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~ 355 (503)
T KOG0282|consen 277 SFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR 355 (503)
T ss_pred ecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc
Confidence 999999999999999999986 45568999999988 8899999999999999999998888888888999999999999
Q ss_pred EEEEEECCCeEEEEECCCCc---eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCC--cceeEEeccccceEE
Q 009569 415 RIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP--KLVSRYKGHKRARFV 489 (532)
Q Consensus 415 ~l~~~~~dg~I~iwd~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~ 489 (532)
.+++++.|+.++||+.+... .....+.....++..+|+++++++-+.|+.|.++.+.... ..-..|.||....+.
T Consensus 356 rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 356 RFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS 435 (503)
T ss_pred eEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence 99999999999999998876 2233445567899999999999999999999999975431 334578999999999
Q ss_pred EEEccCCCCCcEEEEEeCCCcEEEEeCCCCCc
Q 009569 490 IRSCFGGFEQAFIASGSEDSQVNIFLSFSPFA 521 (532)
Q Consensus 490 i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~~ 521 (532)
+.+.| ||||.+|++|+.||.+++||.++.++
T Consensus 436 ~~v~f-SpDG~~l~SGdsdG~v~~wdwkt~kl 466 (503)
T KOG0282|consen 436 CQVDF-SPDGRTLCSGDSDGKVNFWDWKTTKL 466 (503)
T ss_pred eeEEE-cCCCCeEEeecCCccEEEeechhhhh
Confidence 99999 99999999999999999999998643
No 18
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.8e-34 Score=258.81 Aligned_cols=257 Identities=16% Similarity=0.290 Sum_probs=233.7
Q ss_pred cCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEe
Q 009569 256 GRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC 335 (532)
Q Consensus 256 ~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~ 335 (532)
..|..|-+..+++++|.+.|.|+++.|..++|++|+.|++|+|||+.++ ....++.+|-..|..+++|+-..|++++
T Consensus 135 PeWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg---~LkltltGhi~~vr~vavS~rHpYlFs~ 211 (460)
T KOG0285|consen 135 PEWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG---QLKLTLTGHIETVRGVAVSKRHPYLFSA 211 (460)
T ss_pred ccccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC---eEEEeecchhheeeeeeecccCceEEEe
Confidence 4577788899999999999999999999999999999999999999987 6778899999999999999999999999
Q ss_pred eCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCE
Q 009569 336 GQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKR 415 (532)
Q Consensus 336 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 415 (532)
+.|+.|+.||++..+.++.+.+|-..|.|++.+|.-+.|++|+.|.++++||++++........|...|..+.+.|....
T Consensus 212 gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpq 291 (460)
T KOG0285|consen 212 GEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQ 291 (460)
T ss_pred cCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCc
Confidence 99999999999999999999999999999999999999999999999999999998777777777779999999998889
Q ss_pred EEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEc
Q 009569 416 IISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSC 493 (532)
Q Consensus 416 l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 493 (532)
+++|+.|++|++||++.++ .....|...+.+++.+|....+++++.| .|+-|++..+ ..+..+.+|...+..+..
T Consensus 292 vit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g-~f~~nlsgh~~iintl~~- 368 (460)
T KOG0285|consen 292 VITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEG-EFLQNLSGHNAIINTLSV- 368 (460)
T ss_pred eEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCcc-chhhccccccceeeeeee-
Confidence 9999999999999999988 7778899999999999999999998866 4999999998 888889999886544332
Q ss_pred cCCCCCcEEEEEeCCCcEEEEeCCCCCc
Q 009569 494 FGGFEQAFIASGSEDSQVNIFLSFSPFA 521 (532)
Q Consensus 494 ~~s~d~~~l~sgs~dg~i~iw~~~~~~~ 521 (532)
. ...++++|+++|.+.+||.+++..
T Consensus 369 --n-sD~v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 369 --N-SDGVLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred --c-cCceEEEcCCceEEEEEecCcCcc
Confidence 3 345788999999999999999754
No 19
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.5e-34 Score=284.21 Aligned_cols=251 Identities=25% Similarity=0.424 Sum_probs=217.5
Q ss_pred eeEEcc-cccccEEEEEEccCCCEEEEEeCCCeEEEEEeecC-------------------------------C------
Q 009569 264 TLQILE-AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED-------------------------------G------ 305 (532)
Q Consensus 264 ~~~~l~-~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~-------------------------------~------ 305 (532)
..+.+. +|.+.||++.||+||+|||+|+.||.|+||.+... .
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 345566 89999999999999999999999999999998650 0
Q ss_pred --------------------eeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEE
Q 009569 306 --------------------QVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISC 365 (532)
Q Consensus 306 --------------------~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 365 (532)
.-+++..+.||.+.|.++.||.+ .+|++++.|.+|++|++...+|+..|. |...|+|+
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcV 415 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCV 415 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEE
Confidence 00234567899999999999975 599999999999999999999999997 88899999
Q ss_pred EEee-CCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCceee----ee-
Q 009569 366 GWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERW----IE- 439 (532)
Q Consensus 366 ~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~~~~----~~- 439 (532)
+|+| |.++|++|+-||.|+||++...++..|...+. -|++++|.|||+..++|+.+|.+++|+....+... ..
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~-lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRD-LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeEeehhhhh-hheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence 9999 88999999999999999999999999988875 89999999999999999999999999998876111 11
Q ss_pred -----cCCceeEEEEcCCC-CEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEE
Q 009569 440 -----EEEVITSFSLSKDN-KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNI 513 (532)
Q Consensus 440 -----~~~~i~~~~~sp~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~i 513 (532)
....|+.+.|.|.. ..+++.+.|..|+|||.+.. .++..|+|+......+...| +.||++|+++++|..|||
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~KfKG~~n~~SQ~~Asf-s~Dgk~IVs~seDs~VYi 572 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHKFKGFRNTSSQISASF-SSDGKHIVSASEDSWVYI 572 (712)
T ss_pred cCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch-hhhhhhcccccCCcceeeeE-ccCCCEEEEeecCceEEE
Confidence 12379999999854 45888888999999999887 89999999887766777888 779999999999999999
Q ss_pred EeCCCC
Q 009569 514 FLSFSP 519 (532)
Q Consensus 514 w~~~~~ 519 (532)
|+....
T Consensus 573 W~~~~~ 578 (712)
T KOG0283|consen 573 WKNDSF 578 (712)
T ss_pred EeCCCC
Confidence 998543
No 20
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.6e-33 Score=282.90 Aligned_cols=254 Identities=29% Similarity=0.417 Sum_probs=223.8
Q ss_pred eEEcccc-cccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEE
Q 009569 265 LQILEAH-SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (532)
Q Consensus 265 ~~~l~~h-~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 343 (532)
.+.+.+| ...|.++.|+|+|+++++++.|+.+++|+...... .....+.+|...|.+++|+|+++++++++.|++|+|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI 229 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence 5555555 78999999999999999999999999999965431 245666899999999999999999999999999999
Q ss_pred EEC-CCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECC
Q 009569 344 WDV-NSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE 422 (532)
Q Consensus 344 wd~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 422 (532)
||+ ..+.+++++.+|...|++++|+|+++.+++|+.|++|++||++++++......|...|++++|++++.+|++++.|
T Consensus 230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 999 6668999999999999999999999999999999999999999988877777777799999999999999999999
Q ss_pred CeEEEEECCCCce----eeeecCC--ceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCC
Q 009569 423 AAILLLDREANFE----RWIEEEE--VITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGG 496 (532)
Q Consensus 423 g~I~iwd~~~~~~----~~~~~~~--~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s 496 (532)
+.|++||+.++.. ....+.. +++++.|+|+++++++++.|+.+++||+... ..+..+.+|......+...+.+
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG-KSVGTYTGHSNLVRCIFSPTLS 388 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC-cceeeecccCCcceeEeccccc
Confidence 9999999999882 3334433 5899999999999999999999999999988 8999999998864333333338
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCC
Q 009569 497 FEQAFIASGSEDSQVNIFLSFSPF 520 (532)
Q Consensus 497 ~d~~~l~sgs~dg~i~iw~~~~~~ 520 (532)
+.+.++++|+.|+.|++|+..++.
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred CCCCeEEEEeCCceEEEEeCCccc
Confidence 899999999999999999999754
No 21
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.2e-32 Score=259.57 Aligned_cols=275 Identities=21% Similarity=0.343 Sum_probs=226.8
Q ss_pred ccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCC
Q 009569 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317 (532)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (532)
+.+++.|..+.+|+ ..|.+.-.++..|..-|.|+.|+|||.++||++.||+|.+||=.++..+..+..-.+|.
T Consensus 163 i~T~sdDn~v~ffe-------GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHk 235 (603)
T KOG0318|consen 163 IATGSDDNTVAFFE-------GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHK 235 (603)
T ss_pred EEeccCCCeEEEee-------CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCcc
Confidence 34566666777774 34567778889999999999999999999999999999999998886654444455899
Q ss_pred CCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEE-------------------------------------------E
Q 009569 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH-------------------------------------------V 354 (532)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-------------------------------------------~ 354 (532)
+.|.+++|+||+..+++++.|.+++|||+.+.++++ .
T Consensus 236 GsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~ 315 (603)
T KOG0318|consen 236 GSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKV 315 (603)
T ss_pred ccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhhe
Confidence 999999999999999999999999999998776543 3
Q ss_pred eeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEe------------ec------------------------
Q 009569 355 YEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW------------KG------------------------ 398 (532)
Q Consensus 355 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~------------~~------------------------ 398 (532)
+.+|...|+++..+|++++|++|+.||.|.-||...+....+ ..
T Consensus 316 i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~ 395 (603)
T KOG0318|consen 316 ISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNG 395 (603)
T ss_pred ecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCc
Confidence 457888999999999999999999999999999853211100 00
Q ss_pred ---------------------------------------------CccCceEEEEEeeCCCEEEEEECCCeEEEEECCCC
Q 009569 399 ---------------------------------------------QKTLRISDMAITDDGKRIISICREAAILLLDREAN 433 (532)
Q Consensus 399 ---------------------------------------------~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~ 433 (532)
.-.....+++++|++..+++|+.|+.|++|.+...
T Consensus 396 ~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~ 475 (603)
T KOG0318|consen 396 YTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGD 475 (603)
T ss_pred ccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCC
Confidence 00113467889999999999999999999999875
Q ss_pred c----eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCC
Q 009569 434 F----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS 509 (532)
Q Consensus 434 ~----~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg 509 (532)
. .....|.++|+++++|||+.||++|...+.+.+||+.+.......+.-|...+. +++| +|+..++||||-|.
T Consensus 476 ~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~--~~aW-sP~n~~vATGSlDt 552 (603)
T KOG0318|consen 476 ELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKIN--CVAW-SPNNKLVATGSLDT 552 (603)
T ss_pred cccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEE--EEEe-CCCceEEEeccccc
Confidence 5 467889999999999999999999999999999999988444445556777643 3555 99999999999999
Q ss_pred cEEEEeCCCCCce
Q 009569 510 QVNIFLSFSPFAK 522 (532)
Q Consensus 510 ~i~iw~~~~~~~~ 522 (532)
+|.||+++.+...
T Consensus 553 ~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 553 NVIIYSVKKPAKH 565 (603)
T ss_pred eEEEEEccChhhh
Confidence 9999999987544
No 22
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.8e-33 Score=278.53 Aligned_cols=208 Identities=21% Similarity=0.333 Sum_probs=195.4
Q ss_pred ceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEE
Q 009569 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (532)
Q Consensus 263 ~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 342 (532)
....++-||.++|..+.|+|+.++|+++|.|+++++|.+.+. .....+.+|..+|+++.|+|-|-|+||++.|++-+
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~---s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tAr 518 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW---SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTAR 518 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccc---eeEEEecCCCcceeeEEecCCceEEEecCCCceee
Confidence 455668899999999999999999999999999999999865 56677889999999999999999999999999999
Q ss_pred EEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECC
Q 009569 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE 422 (532)
Q Consensus 343 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 422 (532)
+|......+.+.+.+|-+.|.|+.|+|+..++++|+.|.+|++||..++.....+.+|.++|.+++|+|+|++|++|+.|
T Consensus 519 LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed 598 (707)
T KOG0263|consen 519 LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDED 598 (707)
T ss_pred eeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccC
Confidence 99999999999999999999999999999999999999999999998877777777787899999999999999999999
Q ss_pred CeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 009569 423 AAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (532)
Q Consensus 423 g~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~ 473 (532)
|.|.+||+.++. ..+.+|.+.|.++.||.+|..|++|+.|++|++||+...
T Consensus 599 ~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 599 GLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999987 778899999999999999999999999999999998654
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.7e-34 Score=263.83 Aligned_cols=268 Identities=18% Similarity=0.314 Sum_probs=230.7
Q ss_pred ccccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeec
Q 009569 236 SCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG 315 (532)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~ 315 (532)
..+++++..+.+++|+...+. .-..+++|.++|.++.|+++|.++++|+.+|.|++|+..-. .++.+..
T Consensus 109 RRLltgs~SGEFtLWNg~~fn-------FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn----nVk~~~a 177 (464)
T KOG0284|consen 109 RRLLTGSQSGEFTLWNGTSFN-------FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN----NVKIIQA 177 (464)
T ss_pred ceeEeecccccEEEecCceee-------HHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh----hhHHhhH
Confidence 456678888899999875432 22346789999999999999999999999999999998733 2344444
Q ss_pred C-CCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEE
Q 009569 316 H-RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELE 394 (532)
Q Consensus 316 h-~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 394 (532)
| ...|.+++|||+...+++|+.||+|+|||....+....+.+|.-.|.++.|+|....+++|+.|+.|++||.+++...
T Consensus 178 hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl 257 (464)
T KOG0284|consen 178 HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCL 257 (464)
T ss_pred hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchh
Confidence 4 489999999999999999999999999999999888899999999999999999999999999999999999987776
Q ss_pred EeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCC-CCEEEEEecCCeEEEEecC
Q 009569 395 SWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKD-NKYLLVNLINQEIHLWSIE 471 (532)
Q Consensus 395 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~i~iwd~~ 471 (532)
.....|...|..+.|+|++++|++++.|..++++|+++.+ ..+.+|...++++.|+|- ..+|.+|+.||.|..|.+.
T Consensus 258 ~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 258 ATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred hhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 6666677799999999999999999999999999999666 777889999999999994 5788889999999999998
Q ss_pred CCCcceeE-EeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 472 SDPKLVSR-YKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 472 ~~~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
.. +++.. -.+|...++. ..| +|=|.+|++|+.|.++++|....
T Consensus 338 ~~-~p~~~i~~AHd~~iws--l~~-hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 338 LE-EPLGEIPPAHDGEIWS--LAY-HPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred cc-ccccCCCcccccceee--eec-cccceeEeecCCCcceeeeccCC
Confidence 55 44444 4567777554 555 99999999999999999998764
No 24
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.5e-33 Score=251.54 Aligned_cols=255 Identities=17% Similarity=0.271 Sum_probs=231.5
Q ss_pred CcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCc
Q 009569 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (532)
Q Consensus 261 ~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 340 (532)
+....+.+.+|..+|+.+-|+|+-..+++++.|++|++||..++ .+...+++|.+.+.+++|+..|+++++|+.|=.
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg---~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~ 173 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG---ELERSLRGHTDSVFDISFDASGKYLATCSSDLS 173 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccch---hhhhhhhccccceeEEEEecCccEEEecCCccc
Confidence 34567778899999999999999999999999999999999977 347889999999999999999999999999999
Q ss_pred EEEEECCC-CcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEE
Q 009569 341 IRRWDVNS-GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISI 419 (532)
Q Consensus 341 i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 419 (532)
+++||..+ .++++.+.+|...|.+++|-|.|.++++++.|.+|+.|++.++........+...|..+..+.||.+++++
T Consensus 174 ~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 174 AKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASC 253 (406)
T ss_pred hhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEec
Confidence 99999976 57788888999999999999999999999999999999999887777777777799999999999999999
Q ss_pred ECCCeEEEEECCCCc--eeeeecCCceeEEEEcCC---------------CCEEEEEecCCeEEEEecCCCCcceeEEec
Q 009569 420 CREAAILLLDREANF--ERWIEEEEVITSFSLSKD---------------NKYLLVNLINQEIHLWSIESDPKLVSRYKG 482 (532)
Q Consensus 420 ~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~---------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 482 (532)
+.|.+|++|-+.++. ..+..|+.+|.+++|-|. +.++.+++.|++|++||+.++ .++.++.+
T Consensus 254 s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-~cL~tL~g 332 (406)
T KOG0295|consen 254 SNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-MCLFTLVG 332 (406)
T ss_pred CCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-eEEEEEec
Confidence 999999999999985 777889999999999772 258999999999999999999 99999999
Q ss_pred cccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCCce
Q 009569 483 HKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPFAK 522 (532)
Q Consensus 483 ~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~~~ 522 (532)
|.+.+. .++| +|.|+||+++.+|+++++||+++....
T Consensus 333 hdnwVr--~~af-~p~Gkyi~ScaDDktlrvwdl~~~~cm 369 (406)
T KOG0295|consen 333 HDNWVR--GVAF-SPGGKYILSCADDKTLRVWDLKNLQCM 369 (406)
T ss_pred ccceee--eeEE-cCCCeEEEEEecCCcEEEEEeccceee
Confidence 999844 3566 999999999999999999999987543
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.2e-32 Score=266.94 Aligned_cols=254 Identities=18% Similarity=0.303 Sum_probs=223.2
Q ss_pred ceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEE
Q 009569 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (532)
Q Consensus 263 ~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 342 (532)
..+...++|...++|+++||||+++|||+.||.|+|||..++ -+..++..|++.|+.+.|+..++.+++.+.||+|+
T Consensus 341 sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg---fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVR 417 (893)
T KOG0291|consen 341 SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG---FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVR 417 (893)
T ss_pred ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc---eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEE
Confidence 456667899999999999999999999999999999999976 57899999999999999999999999999999999
Q ss_pred EEECCCCcEEEEeecc-CCceEEEEEeeCCCeEEEEeCCC-cEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEE
Q 009569 343 RWDVNSGECLHVYEKT-GVGLISCGWFLDGGGIFAGMTDK-SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC 420 (532)
Q Consensus 343 iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 420 (532)
.||+....+.++|... .....|++..|.|..+++|+.|. .|++|++.++++.....+|.++|.+++|+|++..|++++
T Consensus 418 AwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~S 497 (893)
T KOG0291|consen 418 AWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGS 497 (893)
T ss_pred eeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecc
Confidence 9999999999999865 45577888889999999999887 599999999999999999999999999999999999999
Q ss_pred CCCeEEEEECCCC--ceeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEecc---------------
Q 009569 421 REAAILLLDREAN--FERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH--------------- 483 (532)
Q Consensus 421 ~dg~I~iwd~~~~--~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------------- 483 (532)
.|.+|++||+-.. ......+...+..++|+|+|+-|++++-||.|.+||+... ..+..+.+.
T Consensus 498 WDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~-~q~~~IdgrkD~~~gR~~~D~~ta 576 (893)
T KOG0291|consen 498 WDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEA-VQVGSIDGRKDLSGGRKETDRITA 576 (893)
T ss_pred ccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhc-eeeccccchhhccccccccceeeh
Confidence 9999999998665 4667778889999999999999999999999999999866 333222211
Q ss_pred ---ccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCCc
Q 009569 484 ---KRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPFA 521 (532)
Q Consensus 484 ---~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~~ 521 (532)
....+...+++ ++||.+|++|++.+.|+||++.++.+
T Consensus 577 ~~sa~~K~Ftti~y-SaDG~~IlAgG~sn~iCiY~v~~~vl 616 (893)
T KOG0291|consen 577 ENSAKGKTFTTICY-SADGKCILAGGESNSICIYDVPEGVL 616 (893)
T ss_pred hhcccCCceEEEEE-cCCCCEEEecCCcccEEEEECchhhe
Confidence 11233455777 99999999999999999999998754
No 26
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.7e-32 Score=274.70 Aligned_cols=248 Identities=26% Similarity=0.427 Sum_probs=217.7
Q ss_pred eeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEE
Q 009569 264 TLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (532)
Q Consensus 264 ~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 343 (532)
..+.+.+|...|.+++|+|+|+++++|+.|++|+|||+... ...++++.+|...|++++|+|+++++++|+.|++|+|
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~--~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvri 272 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD--GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRI 272 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC--CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEE
Confidence 56677899999999999999999999999999999999533 2577889999999999999999999999999999999
Q ss_pred EECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeE---EEeecCccC-ceEEEEEeeCCCEEEEE
Q 009569 344 WDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL---ESWKGQKTL-RISDMAITDDGKRIISI 419 (532)
Q Consensus 344 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~-~v~~~~~s~~~~~l~~~ 419 (532)
||+++++++..+..|...|++++|+++++++++++.|+.|++||+.++.. ......... .++++.|+|++.+++++
T Consensus 273 Wd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~ 352 (456)
T KOG0266|consen 273 WDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSA 352 (456)
T ss_pred EeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEe
Confidence 99999999999999999999999999999999999999999999998773 344444443 69999999999999999
Q ss_pred ECCCeEEEEECCCCc--eeeeecCC---ceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEecc-ccceEEEEEc
Q 009569 420 CREAAILLLDREANF--ERWIEEEE---VITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH-KRARFVIRSC 493 (532)
Q Consensus 420 ~~dg~I~iwd~~~~~--~~~~~~~~---~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~ 493 (532)
+.|+.+++||+.... ..+..|.. .+.+...++.++++++|+.|+.|++||+.+. ..+..+.+| ... +..+.
T Consensus 353 ~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~h~~~~--~~~~~ 429 (456)
T KOG0266|consen 353 SLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG-GILQRLEGHSKAA--VSDLS 429 (456)
T ss_pred cCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc-chhhhhcCCCCCc--eeccc
Confidence 999999999999876 45555554 4555666889999999999999999999987 889999999 444 34455
Q ss_pred cCCCCCcEEEEEe--CCCcEEEEeCC
Q 009569 494 FGGFEQAFIASGS--EDSQVNIFLSF 517 (532)
Q Consensus 494 ~~s~d~~~l~sgs--~dg~i~iw~~~ 517 (532)
+ ++...++++++ .|+.+++|..+
T Consensus 430 ~-~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 430 S-HPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred c-CCCcCeeeecCcCCCceEEEecCC
Confidence 5 89999999998 68999999765
No 27
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.2e-31 Score=261.45 Aligned_cols=280 Identities=17% Similarity=0.358 Sum_probs=238.2
Q ss_pred ccccccccCCCCCceeeccCCccCCCCCc-ceeEEcccccccEEEEEEccCCCEEEEEeC-CCeEEEEEeecCCeeEEEE
Q 009569 234 RDSCLFHNTSDSDFSLYSDHQCGRNRIPS-QTLQILEAHSDEVWFLQFSHDGKYLASSSK-DQSAIIWEVKEDGQVSLKH 311 (532)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~h~~~V~~v~~s~~g~~las~s~-dg~i~iwd~~~~~~~~~~~ 311 (532)
...+.||....-.+..+.........+|. .+++.+.-...+|..++|+..|.+||.|+. -|.+.||++.+. ..+.
T Consensus 268 vtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE---sYVl 344 (893)
T KOG0291|consen 268 VTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE---SYVL 344 (893)
T ss_pred eeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc---ceee
Confidence 33455666655555555555554555554 567778777889999999999999999865 489999999865 4556
Q ss_pred EeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCC-
Q 009569 312 RLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG- 390 (532)
Q Consensus 312 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~- 390 (532)
..++|...+++++++|||+++++|+.||.|+|||..+|-|..+|..|+..|+.+.|+..|+.+++++-||+|+.||+..
T Consensus 345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred CeEEEeecCccCceEEEEEeeCCCEEEEEECCC-eEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEE
Q 009569 391 RELESWKGQKTLRISDMAITDDGKRIISICREA-AILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHL 467 (532)
Q Consensus 391 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i 467 (532)
...+++.........|++..|.|..+.+|+.|. .|++|++++++ ..+.+|.++|.+++|+|++..|++++.|.+|++
T Consensus 425 rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRi 504 (893)
T KOG0291|consen 425 RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRI 504 (893)
T ss_pred ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEE
Confidence 556666666655788999999999999998775 59999999999 778899999999999999999999999999999
Q ss_pred EecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCC
Q 009569 468 WSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPF 520 (532)
Q Consensus 468 wd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~ 520 (532)
||+-.....+.++..... ++.+.| .|+|+-|++++-||.|.+||.+.+.
T Consensus 505 W~if~s~~~vEtl~i~sd---vl~vsf-rPdG~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 505 WDIFSSSGTVETLEIRSD---VLAVSF-RPDGKELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred EEeeccCceeeeEeeccc---eeEEEE-cCCCCeEEEEEecceEEEEEhhhce
Confidence 999765456666665444 466788 9999999999999999999998754
No 28
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.6e-31 Score=241.16 Aligned_cols=265 Identities=18% Similarity=0.292 Sum_probs=222.3
Q ss_pred ccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCC
Q 009569 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317 (532)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (532)
..+++.|....+|..++ +.....+.+|++.|+++.||.+|.+||||..+|.|+||+..++.. ...+...-
T Consensus 79 ~aTGGgDD~AflW~~~~-------ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~---~~~~~~e~ 148 (399)
T KOG0296|consen 79 VATGGGDDLAFLWDIST-------GEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE---QWKLDQEV 148 (399)
T ss_pred EEecCCCceEEEEEccC-------CcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce---EEEeeccc
Confidence 34677787888887665 456778999999999999999999999999999999999998743 34444556
Q ss_pred CCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeE-EEe
Q 009569 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL-ESW 396 (532)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~ 396 (532)
..|.-+.|+|.+..|+.|+.||.+.+|.+.++...+.+.+|..++++=.|.|+|+.++++..||+|++||+.++.. ...
T Consensus 149 ~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~ 228 (399)
T KOG0296|consen 149 EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKI 228 (399)
T ss_pred CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEe
Confidence 7788999999999999999999999999999888899999999999999999999999999999999999986432 222
Q ss_pred ec--------------------------------------------------CccCceEE---EEEeeCCCEEEEEECCC
Q 009569 397 KG--------------------------------------------------QKTLRISD---MAITDDGKRIISICREA 423 (532)
Q Consensus 397 ~~--------------------------------------------------~~~~~v~~---~~~s~~~~~l~~~~~dg 423 (532)
.. .+...+.+ +.++..-.+.|+|+-||
T Consensus 229 ~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG 308 (399)
T KOG0296|consen 229 TQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDG 308 (399)
T ss_pred cccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccc
Confidence 20 00001122 22233345678889999
Q ss_pred eEEEEECCCCc-eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEE
Q 009569 424 AILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFI 502 (532)
Q Consensus 424 ~I~iwd~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l 502 (532)
+|.|||+.... +....|...|+.+.|-+ ..+|++++.+|.|+.||.+++ +++.++.||...+.. +.. +|+++++
T Consensus 309 ~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG-~l~~~y~GH~~~Il~--f~l-s~~~~~v 383 (399)
T KOG0296|consen 309 TIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTG-QLKFTYTGHQMGILD--FAL-SPQKRLV 383 (399)
T ss_pred eEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeecccc-ceEEEEecCchheeE--EEE-cCCCcEE
Confidence 99999999988 77788999999999998 789999999999999999999 999999999998555 444 8999999
Q ss_pred EEEeCCCcEEEEeCC
Q 009569 503 ASGSEDSQVNIFLSF 517 (532)
Q Consensus 503 ~sgs~dg~i~iw~~~ 517 (532)
+|+|.|++.+||++.
T Consensus 384 vT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 384 VTVSDDNTALVFEVP 398 (399)
T ss_pred EEecCCCeEEEEecC
Confidence 999999999999864
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.3e-31 Score=249.66 Aligned_cols=259 Identities=17% Similarity=0.341 Sum_probs=226.0
Q ss_pred eccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCC
Q 009569 250 YSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND 329 (532)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 329 (532)
..+.....|..++..+.++..|+++|.++.|+.+|+||++++.|+++.+||..++ .....+.-|..+-.++.|-. .
T Consensus 254 ~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g---~~~q~f~~~s~~~lDVdW~~-~ 329 (524)
T KOG0273|consen 254 SEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG---TVKQQFEFHSAPALDVDWQS-N 329 (524)
T ss_pred ecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc---eEEEeeeeccCCccceEEec-C
Confidence 3344455567778889999999999999999999999999999999999999876 45677777888878899975 4
Q ss_pred CEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEE
Q 009569 330 HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAI 409 (532)
Q Consensus 330 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 409 (532)
..+++++.|+.|+++.+....++.++.+|.+.|.++.|+|.+.+|++++.|++++||.........-...|...|+.+.|
T Consensus 330 ~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~w 409 (524)
T KOG0273|consen 330 DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKW 409 (524)
T ss_pred ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEee
Confidence 57889999999999999999999999999999999999999999999999999999998654444444455558999999
Q ss_pred eeCC---------CEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCccee
Q 009569 410 TDDG---------KRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVS 478 (532)
Q Consensus 410 s~~~---------~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~ 478 (532)
+|+| ..+++++.|++|++||+..+. ..+..|..+|.+++|+|+|+|+++|+.||.|.+|+++++ ++++
T Consensus 410 sp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~-~l~~ 488 (524)
T KOG0273|consen 410 SPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG-KLVK 488 (524)
T ss_pred cCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccch-heeE
Confidence 9964 478999999999999999988 777899999999999999999999999999999999998 8888
Q ss_pred EEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCC
Q 009569 479 RYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSF 517 (532)
Q Consensus 479 ~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~ 517 (532)
.+.+... +..+|| +.+|..|..+-.||.+++-|+.
T Consensus 489 s~~~~~~---Ifel~W-n~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 489 SYQGTGG---IFELCW-NAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eecCCCe---EEEEEE-cCCCCEEEEEecCCCceEEEec
Confidence 8887654 455777 8889999999999999998864
No 30
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.8e-30 Score=227.74 Aligned_cols=246 Identities=22% Similarity=0.382 Sum_probs=209.6
Q ss_pred ceeEEcccccccEEEEEEccC-CCEEEEEeCCCeEEEEEeecCCeeEEEEEe-ecCCCCeEEEEeCCCCCEEEEeeCCCc
Q 009569 263 QTLQILEAHSDEVWFLQFSHD-GKYLASSSKDQSAIIWEVKEDGQVSLKHRL-SGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (532)
Q Consensus 263 ~~~~~l~~h~~~V~~v~~s~~-g~~las~s~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~ 340 (532)
..++.+++|.+.|+.++|+|- |..||+|+.|+.|++|+...+..+.+...+ .+|+..|.+++|+|.|++|++++.|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 346788999999999999997 999999999999999999865556565554 469999999999999999999999999
Q ss_pred EEEEECCCC--cEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCC---CeEEEeecCccCceEEEEEeeCCCE
Q 009569 341 IRRWDVNSG--ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG---RELESWKGQKTLRISDMAITDDGKR 415 (532)
Q Consensus 341 i~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~ 415 (532)
+.||.-..+ +++.++++|...|.+++|+++|++|++++.|+.|-||.+.. -++......|...|..+.|+|...+
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 999987644 68899999999999999999999999999999999999863 3455666677779999999999999
Q ss_pred EEEEECCCeEEEEECC-CCc----eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEE
Q 009569 416 IISICREAAILLLDRE-ANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVI 490 (532)
Q Consensus 416 l~~~~~dg~I~iwd~~-~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i 490 (532)
|++++.|++|++|+.. ... .++.+|...|.+++|+|.|..|++++.|++++||-..+. . -.-|...++.
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~--~---~~~~sr~~Y~- 238 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD--L---SGMHSRALYD- 238 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC--c---chhcccceEe-
Confidence 9999999999999987 332 667788889999999999999999999999999997643 1 1224455554
Q ss_pred EEccCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 491 RSCFGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 491 ~~~~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
+.| . ...|++++.|+.|++|.-..
T Consensus 239 -v~W-~--~~~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 239 -VPW-D--NGVIASGGGDDAIRLFKESD 262 (312)
T ss_pred -eee-c--ccceEeccCCCEEEEEEecC
Confidence 344 2 45799999999999998775
No 31
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.4e-31 Score=228.78 Aligned_cols=227 Identities=18% Similarity=0.314 Sum_probs=200.1
Q ss_pred CEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCc--EEEEeeccCCce
Q 009569 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE--CLHVYEKTGVGL 362 (532)
Q Consensus 285 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i 362 (532)
-+||++|.|.+|++|...+| .+..+++...+.|+.+...|+++.|++++. -.|++||++++. ++.+|.+|...|
T Consensus 11 viLvsA~YDhTIRfWqa~tG---~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTG---ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNV 86 (311)
T ss_pred eEEEeccCcceeeeeehhcC---eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCce
Confidence 47999999999999999988 677888888899999999999999998775 589999998875 588999999999
Q ss_pred EEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc---eeeee
Q 009569 363 ISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIE 439 (532)
Q Consensus 363 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~---~~~~~ 439 (532)
+++.|..+|+.+++|+.||+++|||++.........+. .+|+++..+|+...|+++..+|.|++||+.... .....
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe 165 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE 165 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC-CCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC
Confidence 99999999999999999999999999987666666666 499999999999999999999999999999875 33334
Q ss_pred cCCceeEEEEcCCCCEEEEEecCCeEEEEecCCC-----CcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEE
Q 009569 440 EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD-----PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIF 514 (532)
Q Consensus 440 ~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw 514 (532)
....|.++...|||.+++.+...|..++|++-+. -+++.+|+.|... ++++.+ |||+++|+++|.|.+++||
T Consensus 166 ~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~--il~C~l-SPd~k~lat~ssdktv~iw 242 (311)
T KOG0315|consen 166 DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH--ILRCLL-SPDVKYLATCSSDKTVKIW 242 (311)
T ss_pred CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccce--EEEEEE-CCCCcEEEeecCCceEEEE
Confidence 5578999999999999999999999999998653 2456678888775 566777 9999999999999999999
Q ss_pred eCCCC
Q 009569 515 LSFSP 519 (532)
Q Consensus 515 ~~~~~ 519 (532)
+.++-
T Consensus 243 n~~~~ 247 (311)
T KOG0315|consen 243 NTDDF 247 (311)
T ss_pred ecCCc
Confidence 99886
No 32
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=7.4e-30 Score=245.12 Aligned_cols=249 Identities=25% Similarity=0.402 Sum_probs=216.4
Q ss_pred EEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEE
Q 009569 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (532)
Q Consensus 266 ~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 345 (532)
+.+++|.++|++++|+|++++|++++.||.+++|++.++. ....+..|...+..+.|+|+++++++++.+|.|++||
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE---LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWD 79 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC---cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEE
Confidence 4577899999999999999999999999999999998653 4566778999999999999999999999999999999
Q ss_pred CCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeE
Q 009569 346 VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAI 425 (532)
Q Consensus 346 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I 425 (532)
+.+++.+..+..|...+.++.|++++.++++++.++.+.+||+++.........+...+.+++|+|++.++++++.++.|
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 159 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI 159 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcE
Confidence 99988888888888899999999998888888889999999998655554444555589999999999888888889999
Q ss_pred EEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEE
Q 009569 426 LLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIA 503 (532)
Q Consensus 426 ~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~ 503 (532)
++||+++.. ..+..+...+.++.|+|+++.+++++.++.|++||+.+. +.+..+..|...+.. +.| ++++.+++
T Consensus 160 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~--~~~-~~~~~~~~ 235 (289)
T cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG-KCLGTLRGHENGVNS--VAF-SPDGYLLA 235 (289)
T ss_pred EEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC-ceecchhhcCCceEE--EEE-cCCCcEEE
Confidence 999998766 555577779999999999999999999999999999887 778888777766433 555 88889999
Q ss_pred EEeCCCcEEEEeCCCCCc
Q 009569 504 SGSEDSQVNIFLSFSPFA 521 (532)
Q Consensus 504 sgs~dg~i~iw~~~~~~~ 521 (532)
+++.||.|++|++.++..
T Consensus 236 ~~~~~~~i~i~~~~~~~~ 253 (289)
T cd00200 236 SGSEDGTIRVWDLRTGEC 253 (289)
T ss_pred EEcCCCcEEEEEcCCcee
Confidence 888899999999987543
No 33
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.98 E-value=5.1e-32 Score=249.80 Aligned_cols=241 Identities=16% Similarity=0.280 Sum_probs=209.3
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCC
Q 009569 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (532)
Q Consensus 270 ~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 349 (532)
.-..+|..+.|.|+|+.|++|+..|.+.+|+..+ +.....+..|..+|.++.|++++.++++|+.+|.|++|+..-.
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~---fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS---FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCce---eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh
Confidence 3456899999999999999999999999999742 2334456789999999999999999999999999999997644
Q ss_pred cEEEEeecc-CCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEE
Q 009569 350 ECLHVYEKT-GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLL 428 (532)
Q Consensus 350 ~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iw 428 (532)
.+..+..| ...|.+++|+|+...|++++.||+|+|||....+.......|.-.|.++.|+|....|++++.|..|++|
T Consensus 171 -nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlW 249 (464)
T KOG0284|consen 171 -NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLW 249 (464)
T ss_pred -hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEee
Confidence 34455544 5899999999999999999999999999998655544555666689999999999999999999999999
Q ss_pred ECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEe
Q 009569 429 DREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGS 506 (532)
Q Consensus 429 d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs 506 (532)
|.+++. ..+..|...|..+.|+|++++|++++.|..++++|+++. +.+.++++|...+.. ..|..-...++.+|+
T Consensus 250 DprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkkdv~~--~~WhP~~~~lftsgg 326 (464)
T KOG0284|consen 250 DPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM-KELFTYRGHKKDVTS--LTWHPLNESLFTSGG 326 (464)
T ss_pred cCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh-HHHHHhhcchhhhee--eccccccccceeecc
Confidence 999988 777889999999999999999999999999999999977 889999999988544 555233567899999
Q ss_pred CCCcEEEEeCC
Q 009569 507 EDSQVNIFLSF 517 (532)
Q Consensus 507 ~dg~i~iw~~~ 517 (532)
.||.|..|.+.
T Consensus 327 ~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 327 SDGSVVHWVVG 337 (464)
T ss_pred CCCceEEEecc
Confidence 99999999987
No 34
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=5.2e-31 Score=254.79 Aligned_cols=249 Identities=18% Similarity=0.240 Sum_probs=225.6
Q ss_pred EEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEE
Q 009569 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (532)
Q Consensus 266 ~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 345 (532)
+.+..|++.|.++.|+|...+++++-.+|.|.|||.++. ..++.+.-..-+|.+..|-+-.+.+++|+.|..|+||+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq---tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ---TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFN 83 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccc---eeeeeeeecccchhhheeeeccceEEEecCCceEEEEe
Confidence 345569999999999999999999999999999999865 46677777888999999999999999999999999999
Q ss_pred CCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCC-CeEEEeecCccCceEEEEEee-CCCEEEEEECCC
Q 009569 346 VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMAITD-DGKRIISICREA 423 (532)
Q Consensus 346 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg 423 (532)
..+++.+..|..|...|.+++.+|...++++++.|-+|++||.++ ..+.+...+|...|.+++|+| |.+.+++++-|+
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr 163 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR 163 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence 999999999999999999999999999999999999999999975 456666777777999999999 677999999999
Q ss_pred eEEEEECCCCc--eeeeecCCceeEEEEcCCC--CEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCC
Q 009569 424 AILLLDREANF--ERWIEEEEVITSFSLSKDN--KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQ 499 (532)
Q Consensus 424 ~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~ 499 (532)
+|++|.+.+.. .++.+|...|+|+.+-+.| .||++|+.|..|+|||..+. .+++++.||.+.+.. ++| +|.-
T Consensus 164 TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV~TLeGHt~Nvs~--v~f-hp~l 239 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCVQTLEGHTNNVSF--VFF-HPEL 239 (794)
T ss_pred cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH-HHHHHhhcccccceE--EEe-cCCC
Confidence 99999998877 7888999999999998854 79999999999999999998 999999999998444 455 9999
Q ss_pred cEEEEEeCCCcEEEEeCCCCCc
Q 009569 500 AFIASGSEDSQVNIFLSFSPFA 521 (532)
Q Consensus 500 ~~l~sgs~dg~i~iw~~~~~~~ 521 (532)
.+|+|||+||+|+||+..+-+.
T Consensus 240 piiisgsEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 240 PIIISGSEDGTVRIWNSKTYKL 261 (794)
T ss_pred cEEEEecCCccEEEecCcceeh
Confidence 9999999999999999887543
No 35
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=6.8e-30 Score=224.18 Aligned_cols=269 Identities=20% Similarity=0.327 Sum_probs=218.8
Q ss_pred cccccCCCCCceeeccCCccCCCCCcceeEEc-ccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeec
Q 009569 237 CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQIL-EAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG 315 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~ 315 (532)
.+.+.+.+..+++|+..... . -.+...+ .+|+..|.+++|+|.|++||+||.|.++.||.-. ++.++++.++.+
T Consensus 29 ilAscg~Dk~vriw~~~~~~--s--~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~-~~efecv~~lEG 103 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWSTSSGD--S--WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE-DGEFECVATLEG 103 (312)
T ss_pred EEEeecCCceEEEEecCCCC--c--EEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC-CCceeEEeeeec
Confidence 45677888889999765411 1 2333344 4899999999999999999999999999999987 467889999999
Q ss_pred CCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCC---cEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECC-C-
Q 009569 316 HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG---ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD-G- 390 (532)
Q Consensus 316 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~- 390 (532)
|.+.|.+++|+++|.+||+|+.|+.|.||.+..+ ++...++.|...|..+.|+|...+|++++.|++|++|+-. .
T Consensus 104 HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd 183 (312)
T KOG0645|consen 104 HENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD 183 (312)
T ss_pred cccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCC
Confidence 9999999999999999999999999999999743 5788899999999999999999999999999999999876 3
Q ss_pred -CeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCceeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEe
Q 009569 391 -RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (532)
Q Consensus 391 -~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd 469 (532)
-.+......+...|.+++|+|.|..|++++.|++|+||-..+.- ...|..++..+.|. ...|++++.|+.|++|.
T Consensus 184 dW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~--~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 184 DWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL--SGMHSRALYDVPWD--NGVIASGGGDDAIRLFK 259 (312)
T ss_pred CeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc--chhcccceEeeeec--ccceEeccCCCEEEEEE
Confidence 34455555565689999999999999999999999999865322 22466788999998 55899999999999998
Q ss_pred cCCCC-----cc-eeEEeccccceEEEEEccCCCC-CcEEEEEeCCCcEEEEeCC
Q 009569 470 IESDP-----KL-VSRYKGHKRARFVIRSCFGGFE-QAFIASGSEDSQVNIFLSF 517 (532)
Q Consensus 470 ~~~~~-----~~-~~~~~~~~~~~~~i~~~~~s~d-~~~l~sgs~dg~i~iw~~~ 517 (532)
-.... ++ ...-..|...+.. +.| .|. .++|++|+.||.|++|.+.
T Consensus 260 ~s~~~d~p~~~l~~~~~~aHe~dVNs--V~w-~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 260 ESDSPDEPSWNLLAKKEGAHEVDVNS--VQW-NPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ecCCCCCchHHHHHhhhcccccccce--EEE-cCCCCCceeecCCCceEEEEEec
Confidence 65420 11 1223456665444 444 773 7899999999999999864
No 36
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.98 E-value=3e-30 Score=245.16 Aligned_cols=281 Identities=20% Similarity=0.348 Sum_probs=226.5
Q ss_pred HHHHHHhccccccc-ccCCCCCceeeccCCccCCCCCcceeEEcc---cccccEEEEEEccCCCEEEEEeCCCeEEEEEe
Q 009569 226 VEKALDVQRDSCLF-HNTSDSDFSLYSDHQCGRNRIPSQTLQILE---AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEV 301 (532)
Q Consensus 226 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~ 301 (532)
+.+++.|.++...| +.+.|+.+.+|+..+ .+.+..+. +|++.|.+++|+||++.++|+|.|.+++|||+
T Consensus 192 FV~~VRysPDG~~Fat~gsDgki~iyDGkt-------ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdV 264 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGSDGKIYIYDGKT-------GEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDV 264 (603)
T ss_pred ceeeEEECCCCCeEEEecCCccEEEEcCCC-------ccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEe
Confidence 45566676666655 567788899998776 45566666 89999999999999999999999999999998
Q ss_pred ecCCe----------------------------------------eEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcE
Q 009569 302 KEDGQ----------------------------------------VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (532)
Q Consensus 302 ~~~~~----------------------------------------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 341 (532)
.+... ......+.+|...|+++..+||+++|++|+.||.|
T Consensus 265 s~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I 344 (603)
T KOG0318|consen 265 STNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHI 344 (603)
T ss_pred eccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceE
Confidence 75311 12334567999999999999999999999999999
Q ss_pred EEEECCCCcEEE--------------------------------------------------------------------
Q 009569 342 RRWDVNSGECLH-------------------------------------------------------------------- 353 (532)
Q Consensus 342 ~iwd~~~~~~~~-------------------------------------------------------------------- 353 (532)
.-|+..+|..-+
T Consensus 345 ~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~ 424 (603)
T KOG0318|consen 345 NSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVAC 424 (603)
T ss_pred EEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEe
Confidence 999987553210
Q ss_pred -----Eeec--------cCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEE--EeecCccCceEEEEEeeCCCEEEE
Q 009569 354 -----VYEK--------TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELE--SWKGQKTLRISDMAITDDGKRIIS 418 (532)
Q Consensus 354 -----~~~~--------~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~ 418 (532)
.++. -.-...+++++|++..+++|+.|+.|++|.+.+..+. .....+..+|++++|+||+.+|++
T Consensus 425 ~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~ 504 (603)
T KOG0318|consen 425 ISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAA 504 (603)
T ss_pred cCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEE
Confidence 0000 0112346778999999999999999999999875432 233455569999999999999999
Q ss_pred EECCCeEEEEECCCCc---eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccC
Q 009569 419 ICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495 (532)
Q Consensus 419 ~~~dg~I~iwd~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (532)
+...+.+.+||..+.. ..+..|...|.+++|+|+..++++|+-|-.|.||++....+.+....+|...++. +.|
T Consensus 505 ~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~--v~w- 581 (603)
T KOG0318|consen 505 GDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNS--VAW- 581 (603)
T ss_pred eccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCcee--EEE-
Confidence 9999999999999887 4556799999999999999999999999999999999876666666678777544 555
Q ss_pred CCCCcEEEEEeCCCcEEEEeCC
Q 009569 496 GFEQAFIASGSEDSQVNIFLSF 517 (532)
Q Consensus 496 s~d~~~l~sgs~dg~i~iw~~~ 517 (532)
-|...+++.+.|..|++|++.
T Consensus 582 -lde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 582 -LDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred -ecCceEEeccCcceeEEeccc
Confidence 356789999999999999874
No 37
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.98 E-value=2.5e-30 Score=230.01 Aligned_cols=266 Identities=18% Similarity=0.271 Sum_probs=227.0
Q ss_pred cccccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEee
Q 009569 235 DSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS 314 (532)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~ 314 (532)
..|+.+++.|..+.+|....+ -+...++++|++.|..+.|.+|+..|++++.|.+|+.||++++ +....++
T Consensus 59 gs~~aSgG~Dr~I~LWnv~gd------ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG---~~~rk~k 129 (338)
T KOG0265|consen 59 GSCFASGGSDRAIVLWNVYGD------CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG---KRIRKHK 129 (338)
T ss_pred CCeEeecCCcceEEEEecccc------ccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccc---eeeehhc
Confidence 456777888888899974433 2345677899999999999999999999999999999999988 5668888
Q ss_pred cCCCCeEEEEeCCCC-CEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeE
Q 009569 315 GHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL 393 (532)
Q Consensus 315 ~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 393 (532)
+|..-|+.+.-+.-| .++.+++.|+++++||+++..+++++. ....++++.|..++..+++|+-|+.|++||++.+..
T Consensus 130 ~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~ 208 (338)
T KOG0265|consen 130 GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG 208 (338)
T ss_pred cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcc
Confidence 999999999855444 467788889999999999999888876 355699999999999999999999999999998887
Q ss_pred EEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc------eeeeec----CCceeEEEEcCCCCEEEEEecCC
Q 009569 394 ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF------ERWIEE----EEVITSFSLSKDNKYLLVNLINQ 463 (532)
Q Consensus 394 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~------~~~~~~----~~~i~~~~~sp~~~~l~~~~~dg 463 (532)
......|...|+.+..+|+|.++.+-+.|.++++||++... ..+.++ ......++|+|+++.+.+|+.|.
T Consensus 209 ~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr 288 (338)
T KOG0265|consen 209 LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADR 288 (338)
T ss_pred eEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccc
Confidence 77777777899999999999999999999999999998754 222333 23356789999999999999999
Q ss_pred eEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEE
Q 009569 464 EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIF 514 (532)
Q Consensus 464 ~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw 514 (532)
.+++||..+. ..+..+.||...+ ..+.| +|...+|.+++.|.+|++=
T Consensus 289 ~vyvwd~~~r-~~lyklpGh~gsv--n~~~F-hp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 289 FVYVWDTTSR-RILYKLPGHYGSV--NEVDF-HPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred eEEEeecccc-cEEEEcCCcceeE--EEeee-cCCCcEEEEeccCceeEee
Confidence 9999999887 8999999999874 44666 9999999999999999874
No 38
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=3.1e-29 Score=240.77 Aligned_cols=264 Identities=24% Similarity=0.397 Sum_probs=224.2
Q ss_pred ccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCC
Q 009569 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317 (532)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (532)
++.+..++.+.+|+... .+....+..|...+.++.|+|+++++++++.||.|++|++.++ .....+..|.
T Consensus 24 l~~~~~~g~i~i~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~---~~~~~~~~~~ 93 (289)
T cd00200 24 LATGSGDGTIKVWDLET-------GELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG---ECVRTLTGHT 93 (289)
T ss_pred EEEeecCcEEEEEEeeC-------CCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc---cceEEEeccC
Confidence 34455567777776443 2356778889999999999999999999999999999999865 3455667898
Q ss_pred CCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEee
Q 009569 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK 397 (532)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 397 (532)
..|.++.|++++.++++++.++.|.+||+.+++....+..|...+.++.|+|++.++++++.|+.|++||+++.......
T Consensus 94 ~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 173 (289)
T cd00200 94 SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL 173 (289)
T ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeE
Confidence 89999999999889998888999999999999999888888889999999999888888888999999999865554444
Q ss_pred cCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCc
Q 009569 398 GQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK 475 (532)
Q Consensus 398 ~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~ 475 (532)
..+...+.+++|+|+++.+++++.++.|++||++... ..+..+...+.+++|+|++.++++++.+|.|++||+.+. .
T Consensus 174 ~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~-~ 252 (289)
T cd00200 174 TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG-E 252 (289)
T ss_pred ecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc-e
Confidence 4555589999999999999999999999999998766 333477889999999999888888888999999999887 7
Q ss_pred ceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEe
Q 009569 476 LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFL 515 (532)
Q Consensus 476 ~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~ 515 (532)
....+..|...+.. +.| ++++.+|++++.||.|++|+
T Consensus 253 ~~~~~~~~~~~i~~--~~~-~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 253 CVQTLSGHTNSVTS--LAW-SPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred eEEEccccCCcEEE--EEE-CCCCCEEEEecCCCeEEecC
Confidence 88888888776443 555 88999999999999999996
No 39
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.1e-30 Score=257.40 Aligned_cols=253 Identities=16% Similarity=0.264 Sum_probs=222.0
Q ss_pred cceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecC-CeeEEEEEeecCCCCeEEEEeCCCC-CEEEEeeCCC
Q 009569 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED-GQVSLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEE 339 (532)
Q Consensus 262 ~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg 339 (532)
....+.+.||++.|.++....+|-+|+|||.|+++++|.++++ ....++....+|++.|.+++++..+ .+|+++|.|+
T Consensus 355 ~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~ 434 (775)
T KOG0319|consen 355 TSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDC 434 (775)
T ss_pred CCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCc
Confidence 4445589999999999997778899999999999999998533 2234556678999999999998765 6899999999
Q ss_pred cEEEEECCCCcE-----EE----EeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEe
Q 009569 340 AIRRWDVNSGEC-----LH----VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAIT 410 (532)
Q Consensus 340 ~i~iwd~~~~~~-----~~----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 410 (532)
++++|++...+. +. ....|+..|++++.+|+.+.+++|+.|++.+||+++...+.....+|...|.++.|+
T Consensus 435 tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs 514 (775)
T KOG0319|consen 435 TLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFS 514 (775)
T ss_pred eEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEec
Confidence 999999965221 11 234688999999999999999999999999999999877777777777799999999
Q ss_pred eCCCEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceE
Q 009569 411 DDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARF 488 (532)
Q Consensus 411 ~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 488 (532)
|..+.++++|.|++|+||.+.+.. .++.+|...|..+.|-.+++.|++++.||-|++|+++++ .+++++..|...++
T Consensus 515 ~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~-eC~~tlD~H~DrvW 593 (775)
T KOG0319|consen 515 KNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN-ECEMTLDAHNDRVW 593 (775)
T ss_pred cccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch-hhhhhhhhccceeE
Confidence 999999999999999999999988 778889999999999999999999999999999999999 99999999999988
Q ss_pred EEEEccCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 489 VIRSCFGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 489 ~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
.+.. ++++.+++||+.||.|.+|.=.+
T Consensus 594 aL~~---~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 594 ALSV---SPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred EEee---cCccceeEecCCCeEEEEeecCc
Confidence 7655 78888999999999999997554
No 40
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=3.9e-30 Score=235.44 Aligned_cols=270 Identities=18% Similarity=0.274 Sum_probs=225.5
Q ss_pred cccccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCC---EEEEEeCCCeEEEEEeecCCe-eEEE
Q 009569 235 DSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGK---YLASSSKDQSAIIWEVKEDGQ-VSLK 310 (532)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~---~las~s~dg~i~iwd~~~~~~-~~~~ 310 (532)
..-+++++-++.+.+|+.. ++....+.||.++|.+++|..... .|++++.|.++++|.++.+.. .+..
T Consensus 115 ~~~IltgsYDg~~riWd~~--------Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~ 186 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLK--------GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKAL 186 (423)
T ss_pred CceEEEeecCCeeEEEecC--------CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHH
Confidence 4566788888888888654 788999999999999888866433 599999999999999986532 1223
Q ss_pred EEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECC-------------------------CCcEEEEeeccCCceEEE
Q 009569 311 HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN-------------------------SGECLHVYEKTGVGLISC 365 (532)
Q Consensus 311 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~-------------------------~~~~~~~~~~~~~~i~~~ 365 (532)
..-.||...|-+++..++|..+++|+.|.+|.||+.. ++.++..+.+|..+|.++
T Consensus 187 ~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V 266 (423)
T KOG0313|consen 187 KVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSV 266 (423)
T ss_pred hHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeE
Confidence 3345999999999999999999999999999999932 123456788999999999
Q ss_pred EEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc-----eeeeec
Q 009569 366 GWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-----ERWIEE 440 (532)
Q Consensus 366 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~-----~~~~~~ 440 (532)
.|++ ...+++++.|.+|+.||+.++.......... .+.++.++|..++|++|+.|..|++||.+++. ..+.+|
T Consensus 267 ~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k-sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH 344 (423)
T KOG0313|consen 267 VWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK-SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGH 344 (423)
T ss_pred EEcC-CCceEeecccceEEEEEeecccceeeeecCc-ceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecc
Confidence 9997 7789999999999999998765544443333 79999999999999999999999999999876 778899
Q ss_pred CCceeEEEEcCCC-CEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 441 EEVITSFSLSKDN-KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 441 ~~~i~~~~~sp~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
...|.++.|+|.. ..|++++.|+++++||+++...++..+.+|...+.. +.| .++.+|++||.|++|+|+.-..
T Consensus 345 ~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~--vdW--~~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 345 KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLS--VDW--NEGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEE--Eec--cCCceEEeccCcceEEEecccc
Confidence 9999999999966 567788999999999999986699999999888544 555 4577999999999999997543
No 41
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.3e-30 Score=235.70 Aligned_cols=251 Identities=22% Similarity=0.363 Sum_probs=206.5
Q ss_pred cceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcE
Q 009569 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (532)
Q Consensus 262 ~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 341 (532)
.+...++.+|..+|..+.||||.+||++|+.|..+.+||+.++....... .+|...+.+++|.|||..+++|+.|+++
T Consensus 259 ~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~~~V~Gs~dr~i 336 (519)
T KOG0293|consen 259 FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGFRFVTGSPDRTI 336 (519)
T ss_pred eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCceeEecCCCCcE
Confidence 46688999999999999999999999999999999999999875432211 2356889999999999999999999999
Q ss_pred EEEECCCCcEEEEeecc-CCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEE
Q 009569 342 RRWDVNSGECLHVYEKT-GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC 420 (532)
Q Consensus 342 ~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 420 (532)
..||++ |......++. ...|.+++..+||+++++.+.|..|++++.++...+.....+. +|++++.|.|++++++.-
T Consensus 337 ~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~-~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 337 IMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQ-PITSFSISKDGKLALVNL 414 (519)
T ss_pred EEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccC-ceeEEEEcCCCcEEEEEc
Confidence 999986 4444444433 3568999999999999999999999999998765554443333 899999999999999999
Q ss_pred CCCeEEEEECCCCc--eeeeecCCc--eeEEEEcC-CCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccC
Q 009569 421 REAAILLLDREANF--ERWIEEEEV--ITSFSLSK-DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495 (532)
Q Consensus 421 ~dg~I~iwd~~~~~--~~~~~~~~~--i~~~~~sp-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (532)
.+..|++||++... .++.+|... +..-+|-- +..++++|++|+.|+||+..++ +++..+.||...+.+ ++|.
T Consensus 415 ~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg-kll~~LsGHs~~vNc--VswN 491 (519)
T KOG0293|consen 415 QDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG-KLLAVLSGHSKTVNC--VSWN 491 (519)
T ss_pred ccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC-ceeEeecCCcceeeE--EecC
Confidence 99999999999766 666666543 44445544 5589999999999999999998 999999999988655 5553
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCC
Q 009569 496 GFEQAFIASGSEDSQVNIFLSFSP 519 (532)
Q Consensus 496 s~d~~~l~sgs~dg~i~iw~~~~~ 519 (532)
..+...+|++|.||+|+||.....
T Consensus 492 P~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 492 PADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CCCHHHhhccCCCCeEEEecCCcc
Confidence 345678999999999999988754
No 42
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=4.2e-31 Score=248.87 Aligned_cols=265 Identities=18% Similarity=0.313 Sum_probs=224.8
Q ss_pred cccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecC
Q 009569 237 CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h 316 (532)
.+++++.|..+.+|+-.. ...+++++.+|..+|.+++|+++|..+.++|.|+.+++||+++|. +...+. .
T Consensus 229 LlLS~gmD~~vklW~vy~------~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~---~~~~f~-~ 298 (503)
T KOG0282|consen 229 LLLSGGMDGLVKLWNVYD------DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQ---VLSRFH-L 298 (503)
T ss_pred EEEecCCCceEEEEEEec------CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccce---EEEEEe-c
Confidence 345778888999997543 268899999999999999999999999999999999999999883 444443 3
Q ss_pred CCCeEEEEeCCCC-CEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEE
Q 009569 317 RKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES 395 (532)
Q Consensus 317 ~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 395 (532)
...++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|.++|+++++++.|++++||+.+......
T Consensus 299 ~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik 378 (503)
T KOG0282|consen 299 DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIK 378 (503)
T ss_pred CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccch
Confidence 4567999999998 899999999999999999999999999999999999999999999999999999999998654433
Q ss_pred ee-cCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc-----eeeeecC--CceeEEEEcCCCCEEEEEecCCeEEE
Q 009569 396 WK-GQKTLRISDMAITDDGKRIISICREAAILLLDREANF-----ERWIEEE--EVITSFSLSKDNKYLLVNLINQEIHL 467 (532)
Q Consensus 396 ~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~-----~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i 467 (532)
.. ........++..+|+++++++-+.|+.|.+|.+...- ..+.+|. +.-..+.|||||++|++|+.||.+.+
T Consensus 379 ~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~ 458 (503)
T KOG0282|consen 379 NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNF 458 (503)
T ss_pred hhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEE
Confidence 33 2333367889999999999999999999999875432 4455554 44667899999999999999999999
Q ss_pred EecCCCCcceeEEeccccceEEEEEccCCCC-CcEEEEEeCCCcEEEEe
Q 009569 468 WSIESDPKLVSRYKGHKRARFVIRSCFGGFE-QAFIASGSEDSQVNIFL 515 (532)
Q Consensus 468 wd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d-~~~l~sgs~dg~i~iw~ 515 (532)
||.++. +++..+++|... ++.+.| +|. ...+||++.||.|++|+
T Consensus 459 wdwkt~-kl~~~lkah~~~--ci~v~w-HP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 459 WDWKTT-KLVSKLKAHDQP--CIGVDW-HPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eechhh-hhhhccccCCcc--eEEEEe-cCCCcceeEecccCceeEecC
Confidence 999998 899999999777 455666 554 56799999999999996
No 43
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=4.7e-30 Score=233.00 Aligned_cols=266 Identities=18% Similarity=0.279 Sum_probs=229.6
Q ss_pred cccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCC
Q 009569 239 FHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318 (532)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~ 318 (532)
.+++.|..+.+|+..+ +++..++.||-..|..+++|+-..|+++++.|+.|+.||++.+ +.++.+.+|-+
T Consensus 167 ~tgs~DrtikIwDlat-------g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n---kvIR~YhGHlS 236 (460)
T KOG0285|consen 167 ATGSADRTIKIWDLAT-------GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN---KVIRHYHGHLS 236 (460)
T ss_pred EecCCCceeEEEEccc-------CeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhh---hhHHHhccccc
Confidence 3566777788886554 6788899999999999999999999999999999999999865 56788889999
Q ss_pred CeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeec
Q 009569 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG 398 (532)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 398 (532)
.|.+++.+|.-..|++|+.|.++++||+++...+..+.+|..+|.++.+.|-...+++|+.|++|++||++.+.......
T Consensus 237 ~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt 316 (460)
T KOG0285|consen 237 GVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLT 316 (460)
T ss_pred eeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeee
Confidence 99999999999999999999999999999999999999999999999999988999999999999999998777666666
Q ss_pred CccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcc
Q 009569 399 QKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKL 476 (532)
Q Consensus 399 ~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~ 476 (532)
+|...|.+++.+|....+++++.| .|+-|++..+. ..+.+|...|++++...|+ ++++|+.+|.+.+||.+++ ..
T Consensus 317 ~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg-~n 393 (460)
T KOG0285|consen 317 HHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSG-HN 393 (460)
T ss_pred cccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcC-cc
Confidence 776799999999999889988877 79999998887 5677899999999998776 7889999999999999988 44
Q ss_pred eeEEeccc------cceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 477 VSRYKGHK------RARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 477 ~~~~~~~~------~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
.+...... ...-+..+|| ...|..|++|..|.+|++|.-..
T Consensus 394 yQ~~~t~vqpGSl~sEagI~as~f-Dktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 394 YQRGQTIVQPGSLESEAGIFASCF-DKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cccccccccCCccccccceeEEee-cccCceEEeccCCcceEEEeccc
Confidence 44432111 1112345777 88899999999999999998654
No 44
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=9.3e-32 Score=243.06 Aligned_cols=233 Identities=20% Similarity=0.374 Sum_probs=201.7
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCc
Q 009569 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (532)
Q Consensus 271 h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 350 (532)
....|+|+.+ |...+++|..|++|+|||.++- .+...+.||++.|.|+.| +.+.+++|+.|.+|++||+.+|+
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~---~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSL---ECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccH---HHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCc
Confidence 4578999998 5667999999999999999754 567888999999999998 56799999999999999999999
Q ss_pred EEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCe---EEEeecCccCceEEEEEeeCCCEEEEEECCCeEEE
Q 009569 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE---LESWKGQKTLRISDMAITDDGKRIISICREAAILL 427 (532)
Q Consensus 351 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~i 427 (532)
++.++-+|...|..+.|+ +.++++++.|.++.+||+.... +.....+|...|+.+.|+ .+++++++.|.+|++
T Consensus 269 ~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikv 344 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKV 344 (499)
T ss_pred hhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEE
Confidence 999999999999999996 5699999999999999997533 223334555589999886 459999999999999
Q ss_pred EECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEE
Q 009569 428 LDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG 505 (532)
Q Consensus 428 wd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sg 505 (532)
|++.+.. .++.+|...|.|+.+. ++++++|+.|.+|++||+..+ .+++.+.||..-+..++ | |.+.|++|
T Consensus 345 W~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G-~cLRvLeGHEeLvRciR--F---d~krIVSG 416 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIR--F---DNKRIVSG 416 (499)
T ss_pred Eeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEecccc-HHHHHHhchHHhhhhee--e---cCceeeec
Confidence 9999988 6777899999988875 899999999999999999999 99999999999754433 3 56889999
Q ss_pred eCCCcEEEEeCCCCCce
Q 009569 506 SEDSQVNIFLSFSPFAK 522 (532)
Q Consensus 506 s~dg~i~iw~~~~~~~~ 522 (532)
+.||+|++||+.++.-.
T Consensus 417 aYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 417 AYDGKIKVWDLQAALDP 433 (499)
T ss_pred cccceEEEEecccccCC
Confidence 99999999999887543
No 45
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=5.2e-31 Score=238.23 Aligned_cols=258 Identities=19% Similarity=0.320 Sum_probs=215.8
Q ss_pred cccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCC
Q 009569 239 FHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318 (532)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~ 318 (532)
.++..|..+++|+... ..++..+.||++.|.|+.| +.+.|++||.|.+|+|||++++ +++.++.+|..
T Consensus 211 VSGlrDnTikiWD~n~-------~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tg---e~l~tlihHce 278 (499)
T KOG0281|consen 211 VSGLRDNTIKIWDKNS-------LECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTG---EPLNTLIHHCE 278 (499)
T ss_pred hcccccCceEEecccc-------HHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCC---chhhHHhhhcc
Confidence 3455566666665443 5678899999999999999 4569999999999999999988 56788889999
Q ss_pred CeEEEEeCCCCCEEEEeeCCCcEEEEECCCCc---EEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEE
Q 009569 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE---CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES 395 (532)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 395 (532)
.|..+.|+ ..++++|+.|.++.+||+.... +.+.+.+|.+.|..+.|+ .+++++++.|.+|++|++.+.+...
T Consensus 279 aVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvR 354 (499)
T KOG0281|consen 279 AVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVR 354 (499)
T ss_pred eeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeeh
Confidence 99999997 4599999999999999997654 335677899999999994 6799999999999999999988888
Q ss_pred eecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 009569 396 WKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (532)
Q Consensus 396 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~ 473 (532)
....|...|.|+.+. ++++++|+.|.+|++||+..+. ..+.+|+.-|.|+.|. .+.+++|+.||+|++||+...
T Consensus 355 tl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 355 TLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred hhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccc
Confidence 777777678887774 7899999999999999999998 7788999999999996 778999999999999999765
Q ss_pred Cc--------ceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCCc
Q 009569 474 PK--------LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPFA 521 (532)
Q Consensus 474 ~~--------~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~~ 521 (532)
.. ++.++..|.+.+ .+..| |...|++++.|.+|.|||+.++..
T Consensus 431 ldpra~~~~~Cl~~lv~hsgRV--FrLQF---D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 431 LDPRAPASTLCLRTLVEHSGRV--FRLQF---DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred cCCcccccchHHHhhhhcccee--EEEee---cceEEEeccCCCeEEEEEcCCCCc
Confidence 22 344555666664 44555 667899999999999999987643
No 46
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=2.3e-29 Score=224.50 Aligned_cols=312 Identities=20% Similarity=0.329 Sum_probs=237.0
Q ss_pred CCCCccCCcchHHHHHHHHHHhcccccccccCCC---------CCcee-eccC-CccCCCCCcceeEEcccccccEEEEE
Q 009569 211 LPASVVIPEKRLEHLVEKALDVQRDSCLFHNTSD---------SDFSL-YSDH-QCGRNRIPSQTLQILEAHSDEVWFLQ 279 (532)
Q Consensus 211 ~~~~~~~p~~rl~~l~~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~-~~~~~~~~~~~~~~l~~h~~~V~~v~ 279 (532)
.|.....|++||..++..+++..........+.. ..+.+ |+.+ .......+.-....+..|++++.+.+
T Consensus 40 ~~~~~~~PserLl~lv~~gmq~~~d~~~~~~~~S~~~~t~p~~~giDle~dadaq~~s~e~~~yEt~ylt~HK~~cR~aa 119 (430)
T KOG0640|consen 40 TPANICAPSERLLHLVAKGMQAENDGDLRAVSSSVLLITTPVTAGIDLEFDADAQGSSPEPSEYETKYLTSHKSPCRAAA 119 (430)
T ss_pred CcCCCCCCHHHHHHHHHHHhhcccCcceecccccccceeccCcCceeeeeccccccCCCCCcccceEEEeecccceeeee
Confidence 4556778999999999888877665544322221 11122 2212 11122223334556778999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEEeec---------------CCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEE
Q 009569 280 FSHDGKYLASSSKDQSAIIWEVKE---------------DGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (532)
Q Consensus 280 ~s~~g~~las~s~dg~i~iwd~~~---------------~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 344 (532)
|||||.++|||+.|..|+|.|++. ......++++-.|..+|+++.|+|....|++++.|++|+++
T Consensus 120 fs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlF 199 (430)
T KOG0640|consen 120 FSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLF 199 (430)
T ss_pred eCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEE
Confidence 999999999999999999999861 11224678889999999999999999999999999999999
Q ss_pred ECCCCcEEEEee--ccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEe---ecCccCceEEEEEeeCCCEEEEE
Q 009569 345 DVNSGECLHVYE--KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW---KGQKTLRISDMAITDDGKRIISI 419 (532)
Q Consensus 345 d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~ 419 (532)
|+......+.++ ....+|.++.|+|.|.++++|....++++||+++-+...- ...|.+.|+++.+++.+++.+++
T Consensus 200 DfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTa 279 (430)
T KOG0640|consen 200 DFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTA 279 (430)
T ss_pred ecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEe
Confidence 996543322222 2456899999999999999999999999999998654332 23456689999999999999999
Q ss_pred ECCCeEEEEECCCCc-eeee--ec-CCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccc---cceEEEEE
Q 009569 420 CREAAILLLDREANF-ERWI--EE-EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK---RARFVIRS 492 (532)
Q Consensus 420 ~~dg~I~iwd~~~~~-~~~~--~~-~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~i~~ 492 (532)
+.||.|++||--+++ ...+ .| ...|.+..|+.+++|+++.+.|..+++|.+.++ +.+..+.|.. ........
T Consensus 280 SkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~-R~l~~YtGAg~tgrq~~rtqA 358 (430)
T KOG0640|consen 280 SKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG-RMLKEYTGAGTTGRQKHRTQA 358 (430)
T ss_pred ccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC-ceEEEEecCCcccchhhhhhh
Confidence 999999999977766 2222 33 467999999999999999999999999999999 8999998762 22223445
Q ss_pred ccCCCCCcEEEEEeC-CCcEEEEeCCCCCceee
Q 009569 493 CFGGFEQAFIASGSE-DSQVNIFLSFSPFAKKI 524 (532)
Q Consensus 493 ~~~s~d~~~l~sgs~-dg~i~iw~~~~~~~~~~ 524 (532)
.| +....|++.-.+ .+.+.-||.+++....+
T Consensus 359 vF-NhtEdyVl~pDEas~slcsWdaRtadr~~l 390 (430)
T KOG0640|consen 359 VF-NHTEDYVLFPDEASNSLCSWDARTADRVAL 390 (430)
T ss_pred hh-cCccceEEccccccCceeeccccchhhhhh
Confidence 66 666777776655 57799999988654433
No 47
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1e-29 Score=254.50 Aligned_cols=248 Identities=17% Similarity=0.262 Sum_probs=219.5
Q ss_pred cceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcE
Q 009569 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (532)
Q Consensus 262 ~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 341 (532)
..++..+..|.++|..++|+|.+.++++|+.|-.|+||+..+. +++.++.+|-..|..+.|++.-.+|+++|.|.+|
T Consensus 41 ~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r---rclftL~GHlDYVRt~~FHheyPWIlSASDDQTI 117 (1202)
T KOG0292|consen 41 GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR---RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTI 117 (1202)
T ss_pred hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc---eehhhhccccceeEEeeccCCCceEEEccCCCeE
Confidence 5678889999999999999999999999999999999999865 6889999999999999999999999999999999
Q ss_pred EEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCC--------C---------------------e
Q 009569 342 RRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG--------R---------------------E 392 (532)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------~---------------------~ 392 (532)
+||+..+++++..+.+|...|.|..|+|....+++++-|.+|++||+.+ + .
T Consensus 118 rIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaV 197 (1202)
T KOG0292|consen 118 RIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAV 197 (1202)
T ss_pred EEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCee
Confidence 9999999999999999999999999999999999999999999999964 1 0
Q ss_pred EEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc----eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEE
Q 009569 393 LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLW 468 (532)
Q Consensus 393 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iw 468 (532)
+.....+|...|+-++|+|.-..|++|+.|..|++|.....+ .+..+|...|+++-|+|...++++.++|++|+||
T Consensus 198 VK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVw 277 (1202)
T KOG0292|consen 198 VKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW 277 (1202)
T ss_pred eeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence 123334566689999999999999999999999999987655 5667899999999999999999999999999999
Q ss_pred ecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCC
Q 009569 469 SIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSF 517 (532)
Q Consensus 469 d~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~ 517 (532)
|+... +.+++|+......+++.. +|..+++++| .|+-+.+|.++
T Consensus 278 Dm~kR-t~v~tfrrendRFW~laa---hP~lNLfAAg-HDsGm~VFkle 321 (1202)
T KOG0292|consen 278 DMTKR-TSVQTFRRENDRFWILAA---HPELNLFAAG-HDSGMIVFKLE 321 (1202)
T ss_pred ecccc-cceeeeeccCCeEEEEEe---cCCcceeeee-cCCceEEEEEc
Confidence 99988 899999877777666554 8888887766 45555566665
No 48
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=5e-31 Score=243.67 Aligned_cols=271 Identities=20% Similarity=0.314 Sum_probs=231.8
Q ss_pred CCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEE
Q 009569 253 HQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQL 332 (532)
Q Consensus 253 ~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 332 (532)
..+..+.+|......+..|.+.|..+.|-++...|++|+.|..|++|++..+ ......++.+..++|+.+.|.+++.++
T Consensus 156 d~~v~~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~-k~~~~~tLaGs~g~it~~d~d~~~~~~ 234 (459)
T KOG0288|consen 156 DHFVEDTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGE-KSELISTLAGSLGNITSIDFDSDNKHV 234 (459)
T ss_pred chhhhcccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccc-hhhhhhhhhccCCCcceeeecCCCceE
Confidence 4566678899999999999999999999999999999999999999999854 355778888899999999999999999
Q ss_pred EEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeC
Q 009569 333 LTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDD 412 (532)
Q Consensus 333 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 412 (532)
++++.|+.+++|++...+...++.+|...|+++.|......+++|+.|.+|++||+....+....... ..+.+|+.+
T Consensus 235 iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~-S~cnDI~~~-- 311 (459)
T KOG0288|consen 235 IAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG-SQCNDIVCS-- 311 (459)
T ss_pred EeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc-ccccceEec--
Confidence 99999999999999999999999999999999999987777999999999999999875443333222 267777777
Q ss_pred CCEEEEEECCCeEEEEECCCCc-eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccc--cceEE
Q 009569 413 GKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK--RARFV 489 (532)
Q Consensus 413 ~~~l~~~~~dg~I~iwd~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~ 489 (532)
...++++..|+.|++||.++.. .......+.|+++..++++..|++++.|.++.+.|+++. .....|.... ...-.
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~~~~sA~g~k~asDw 390 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIRQTFSAEGFKCASDW 390 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccc-cEEEEeecccccccccc
Confidence 4578889999999999998887 555666779999999999999999999999999999998 7777776432 12224
Q ss_pred EEEccCCCCCcEEEEEeCCCcEEEEeCCCCCceeeecccc
Q 009569 490 IRSCFGGFEQAFIASGSEDSQVNIFLSFSPFAKKIKYTSM 529 (532)
Q Consensus 490 i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~~~~~~~~~~ 529 (532)
.+++| ||++.|+++||.||.|+||++.+++.......+-
T Consensus 391 trvvf-Spd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~ 429 (459)
T KOG0288|consen 391 TRVVF-SPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST 429 (459)
T ss_pred ceeEE-CCCCceeeeccCCCcEEEEEccCceEEEEeccCC
Confidence 56778 9999999999999999999999998877655443
No 49
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.1e-28 Score=270.33 Aligned_cols=246 Identities=17% Similarity=0.298 Sum_probs=204.9
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecC----Cee-EEEEEeecCCCCeEEEEeCC-CCCEEEEeeCCCcE
Q 009569 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED----GQV-SLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAI 341 (532)
Q Consensus 268 l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~----~~~-~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i 341 (532)
+..|.+.|++++|+|+|++||+|+.|+.|+||+.... ... .....+. +...|.+++|+| ++.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4458999999999999999999999999999997531 110 1122233 456799999987 47899999999999
Q ss_pred EEEECCCCcEEEEeeccCCceEEEEEee-CCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEe-eCCCEEEEE
Q 009569 342 RRWDVNSGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAIT-DDGKRIISI 419 (532)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~ 419 (532)
++||+.+++.+..+..|...|++++|+| ++.+|++|+.|+.|++||++++........+ ..|.++.|+ +++.++++|
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEE
Confidence 9999999999999999999999999997 7889999999999999999875544433333 379999995 578999999
Q ss_pred ECCCeEEEEECCCCc---eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCC-----CcceeEEeccccceEEEE
Q 009569 420 CREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD-----PKLVSRYKGHKRARFVIR 491 (532)
Q Consensus 420 ~~dg~I~iwd~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~i~ 491 (532)
+.|+.|++||+++.. ..+.+|...|.++.|. ++.+|++++.|+.|++||+... ..++..+.+|...+..
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~-- 713 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF-- 713 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE--
Confidence 999999999998754 4566888999999997 7889999999999999999742 2567889999877544
Q ss_pred EccCCCCCcEEEEEeCCCcEEEEeCCCC
Q 009569 492 SCFGGFEQAFIASGSEDSQVNIFLSFSP 519 (532)
Q Consensus 492 ~~~~s~d~~~l~sgs~dg~i~iw~~~~~ 519 (532)
+.| ++++.+|++|+.||.|++|+....
T Consensus 714 v~~-s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 714 VGL-SVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EEE-cCCCCEEEEEeCCCEEEEEECCCC
Confidence 444 889999999999999999997654
No 50
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-28 Score=219.90 Aligned_cols=252 Identities=17% Similarity=0.229 Sum_probs=213.7
Q ss_pred eeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeC--CCcE
Q 009569 264 TLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ--EEAI 341 (532)
Q Consensus 264 ~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~--dg~i 341 (532)
+.+.+..-.+.|+++.|+++|.++++++.|.+++|||..++ +...++..+.-.|..++|....+.++.++. |.+|
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g---~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG---KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC---ceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 33455556788999999999999999999999999999987 455667777778889999887777777776 8899
Q ss_pred EEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEEC
Q 009569 342 RRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (532)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 421 (532)
+..++.+.+.++.|.+|...|.+++.+|-+..+++++.|++|++||++........... .-..++|+|.|-++|++..
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALANG 160 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEecC
Confidence 99999999999999999999999999999999999999999999999965554444433 3455799999999999988
Q ss_pred CCeEEEEECCCCc----eeee---ecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccce-EEEEEc
Q 009569 422 EAAILLLDREANF----ERWI---EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRAR-FVIRSC 493 (532)
Q Consensus 422 dg~I~iwd~~~~~----~~~~---~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~i~~~ 493 (532)
...|++||++... ..+. ......+.+.|||||++|+.++..+.+++.|.-++ ....++.++.... ..+.++
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G-~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG-TVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC-cEeeeEeeccCCCCcceeEE
Confidence 8899999998863 2222 33567899999999999999999999999999988 7888998886643 235667
Q ss_pred cCCCCCcEEEEEeCCCcEEEEeCCCCCce
Q 009569 494 FGGFEQAFIASGSEDSQVNIFLSFSPFAK 522 (532)
Q Consensus 494 ~~s~d~~~l~sgs~dg~i~iw~~~~~~~~ 522 (532)
| +||+++|++|+.||+|++|+++++...
T Consensus 240 f-tPds~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 240 F-TPDSKFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred E-CCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence 7 999999999999999999999998643
No 51
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=5.8e-29 Score=226.79 Aligned_cols=251 Identities=16% Similarity=0.278 Sum_probs=209.7
Q ss_pred ceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEE
Q 009569 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (532)
Q Consensus 263 ~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 342 (532)
..+..+..|+++|.+++.+|+.+++|||+.|....+|++.++. ....+.+|...|+++.||.+|.+||||+.+|.|+
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge---~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~ 131 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE---FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVL 131 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc---ceeEecCCCCceEEEEEccCceEEEecCCCccEE
Confidence 3456788999999999999999999999999999999999874 5677899999999999999999999999999999
Q ss_pred EEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECC
Q 009569 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE 422 (532)
Q Consensus 343 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 422 (532)
||...++.....+......+.-+.|+|.+..|++|+.||.+.+|.+.++...+....|..++++=.|.|+|+.++++..|
T Consensus 132 v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 132 VFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred EEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecC
Confidence 99999999888887666778889999999999999999999999999866666666677799999999999999999999
Q ss_pred CeEEEEECCCCc--eeeee---------------------------------------------------cCCceeEE--
Q 009569 423 AAILLLDREANF--ERWIE---------------------------------------------------EEEVITSF-- 447 (532)
Q Consensus 423 g~I~iwd~~~~~--~~~~~---------------------------------------------------~~~~i~~~-- 447 (532)
|+|++||+.++. ..... +...+.|+
T Consensus 212 gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~ 291 (399)
T KOG0296|consen 212 GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVES 291 (399)
T ss_pred ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhh
Confidence 999999999875 11110 01112222
Q ss_pred -EEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCCce
Q 009569 448 -SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPFAK 522 (532)
Q Consensus 448 -~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~~~ 522 (532)
.++..=.+.++|+-||+|.|||+... .++..-.|..+ ++++.| -+ ..+|++++.||.|+.||.++|.+.
T Consensus 292 ~~~ss~lpL~A~G~vdG~i~iyD~a~~--~~R~~c~he~~--V~~l~w-~~-t~~l~t~c~~g~v~~wDaRtG~l~ 361 (399)
T KOG0296|consen 292 IPSSSKLPLAACGSVDGTIAIYDLAAS--TLRHICEHEDG--VTKLKW-LN-TDYLLTACANGKVRQWDARTGQLK 361 (399)
T ss_pred cccccccchhhcccccceEEEEecccc--hhheeccCCCc--eEEEEE-cC-cchheeeccCceEEeeeccccceE
Confidence 33334467889999999999999875 44555557766 566777 34 689999999999999999998654
No 52
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=4.5e-28 Score=265.52 Aligned_cols=270 Identities=14% Similarity=0.240 Sum_probs=209.9
Q ss_pred cccCCCCCceeeccCCccCC-CCCcceeEEcccccccEEEEEEcc-CCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecC
Q 009569 239 FHNTSDSDFSLYSDHQCGRN-RIPSQTLQILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316 (532)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~h~~~V~~v~~s~-~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h 316 (532)
++++.++.+.+|+....... .....+...+. +...|.+++|+| ++.+||+++.||+|++||+.++ .....+.+|
T Consensus 499 atgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~---~~~~~~~~H 574 (793)
T PLN00181 499 ATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS---QLVTEMKEH 574 (793)
T ss_pred EEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC---eEEEEecCC
Confidence 35555667777764321100 01111223333 346899999998 5789999999999999999865 456778899
Q ss_pred CCCeEEEEeCC-CCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEee-CCCeEEEEeCCCcEEEEECCCCe-E
Q 009569 317 RKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRE-L 393 (532)
Q Consensus 317 ~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~-~ 393 (532)
...|++++|+| ++.+|++|+.|++|++||+.++.++..+..+ ..+.++.|++ ++.++++|+.||.|++||++... .
T Consensus 575 ~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~ 653 (793)
T PLN00181 575 EKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP 653 (793)
T ss_pred CCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 99999999997 7899999999999999999999998888754 5789999964 78999999999999999998643 2
Q ss_pred EEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCC------c--eeeeecCCceeEEEEcCCCCEEEEEecCCeE
Q 009569 394 ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN------F--ERWIEEEEVITSFSLSKDNKYLLVNLINQEI 465 (532)
Q Consensus 394 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~------~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i 465 (532)
......|...|.++.|. ++.++++++.|++|++||++.. . ..+.+|...+.+++|+|++.+|++|+.|+.|
T Consensus 654 ~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v 732 (793)
T PLN00181 654 LCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEV 732 (793)
T ss_pred ceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEE
Confidence 22333455589999997 6789999999999999999743 1 4566788899999999999999999999999
Q ss_pred EEEecCCCCcceeEEec-----------cccceEEEEEccCCCCCcEEEEEeCCCcEEEEeC
Q 009569 466 HLWSIESDPKLVSRYKG-----------HKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLS 516 (532)
Q Consensus 466 ~iwd~~~~~~~~~~~~~-----------~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~ 516 (532)
++|+.... .++..+.. +.....+..++| ++++..|++|+.||.|+||++
T Consensus 733 ~iw~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~w-s~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 733 FVYHKAFP-MPVLSYKFKTIDPVSGLEVDDASQFISSVCW-RGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEECCCC-CceEEEecccCCcccccccCCCCcEEEEEEE-cCCCCeEEEecCCCcEEEEec
Confidence 99998655 33322211 111223555677 999999999999999999986
No 53
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=1.8e-27 Score=221.33 Aligned_cols=250 Identities=19% Similarity=0.276 Sum_probs=211.9
Q ss_pred CcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCc
Q 009569 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (532)
Q Consensus 261 ~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 340 (532)
..+.+.+++||...|+.+.|+|+...+++++.|..|+||.+.... .......|..+|+.+..+|.|.||++++.|++
T Consensus 250 s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s---~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~ 326 (506)
T KOG0289|consen 250 SNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS---EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGT 326 (506)
T ss_pred hhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc---CccccccccccceeeeeccCCcEEEEecCCce
Confidence 357788999999999999999999999999999999999997553 44556789999999999999999999999999
Q ss_pred EEEEECCCCcEEEEeec--cCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEE
Q 009569 341 IRRWDVNSGECLHVYEK--TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIIS 418 (532)
Q Consensus 341 i~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 418 (532)
..+.|++++.++..... ..-.+++.+|+|||..|.+|..|+.+++||+.++.....++.|.++|..++|+.+|.++++
T Consensus 327 w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat 406 (506)
T KOG0289|consen 327 WAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLAT 406 (506)
T ss_pred EEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEE
Confidence 99999999998877664 3456899999999999999999999999999987766667778889999999999999999
Q ss_pred EECCCeEEEEECCCCc-ee--eeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCC-CCcceeEEeccccceEEEEEcc
Q 009569 419 ICREAAILLLDREANF-ER--WIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES-DPKLVSRYKGHKRARFVIRSCF 494 (532)
Q Consensus 419 ~~~dg~I~iwd~~~~~-~~--~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~i~~~~ 494 (532)
++.|+.|++||++..+ .. .......+.+++|.+.|.+|+.++.|=.|++++-.+ .+..+..+..|.+... .+.|
T Consensus 407 ~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st--~v~F 484 (506)
T KOG0289|consen 407 AADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLST--GVRF 484 (506)
T ss_pred EecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccc--eeee
Confidence 9999999999999877 22 223344799999999999999998777777777433 2366667777765432 3445
Q ss_pred CCCCCcEEEEEeCCCcEEEEeC
Q 009569 495 GGFEQAFIASGSEDSQVNIFLS 516 (532)
Q Consensus 495 ~s~d~~~l~sgs~dg~i~iw~~ 516 (532)
..+.++++++|.|..++++.+
T Consensus 485 -g~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 485 -GEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred -cccceEEeeccchhheEEeec
Confidence 778899999999999888764
No 54
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.5e-29 Score=218.56 Aligned_cols=241 Identities=13% Similarity=0.210 Sum_probs=204.8
Q ss_pred ccccEEEEEEccC-CCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCC-CCCEEEEeeCCCcEEEEECCC
Q 009569 271 HSDEVWFLQFSHD-GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNS 348 (532)
Q Consensus 271 h~~~V~~v~~s~~-g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~ 348 (532)
-.+.+..++|+++ .+.+++++.||++++||.. ..-.++..++.|...|.++.|++ +...+++++.|++|++|+...
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~--~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLT--MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccC--CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 4578999999995 4678899999999999965 33357888999999999999998 456788889999999999999
Q ss_pred CcEEEEeeccCCceEEEEEee-CCCeEEEEeCCCcEEEEECCC-CeEEEeecCccCceEEEEEee-CCCEEEEEECCCeE
Q 009569 349 GECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMAITD-DGKRIISICREAAI 425 (532)
Q Consensus 349 ~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~I 425 (532)
.+.+.++.+|...|....|+| ..+.+++++.|+++++||++. ++... ...|...|.++.|+. +.+.+++|+.|+.|
T Consensus 137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~v 215 (311)
T KOG0277|consen 137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLV 215 (311)
T ss_pred CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceE
Confidence 999999999999999999999 678999999999999999974 33333 445556899999998 56688999999999
Q ss_pred EEEECCCCc---eeeeecCCceeEEEEcCCC-CEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcE
Q 009569 426 LLLDREANF---ERWIEEEEVITSFSLSKDN-KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAF 501 (532)
Q Consensus 426 ~iwd~~~~~---~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~ 501 (532)
++||+++.+ ..+.+|.-.|..+.|||.. ..|++++-|-+++|||...+...+.++.-|..-+..+.+.. .++.+
T Consensus 216 r~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~--~~~~~ 293 (311)
T KOG0277|consen 216 RGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSL--FDPGQ 293 (311)
T ss_pred EEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecccccc--ccCce
Confidence 999999877 5667899999999999965 67889999999999999876577778887877655544433 36789
Q ss_pred EEEEeCCCcEEEEeC
Q 009569 502 IASGSEDSQVNIFLS 516 (532)
Q Consensus 502 l~sgs~dg~i~iw~~ 516 (532)
+|+.+.|+.++||+.
T Consensus 294 vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 294 VASTGWDELLYVWNP 308 (311)
T ss_pred eeecccccceeeecc
Confidence 999999999999985
No 55
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.8e-29 Score=250.41 Aligned_cols=248 Identities=16% Similarity=0.230 Sum_probs=222.5
Q ss_pred EcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEEC
Q 009569 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (532)
Q Consensus 267 ~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 346 (532)
.++..+..|..++|+|...+++++-..|.|.+||.+-+ .++..|..|.++|..++|+|...++++|+.|..|++|+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~---tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG---TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhh---hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec
Confidence 45567788999999999999999999999999999865 567889999999999999999999999999999999999
Q ss_pred CCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEE
Q 009569 347 NSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAIL 426 (532)
Q Consensus 347 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~ 426 (532)
.+.+|+.++.+|-..|..+.|++.-.+|++++.|.+|+||+..++.......+|...|.|..|+|....++++|-|.+|+
T Consensus 81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVR 160 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVR 160 (1202)
T ss_pred ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEE
Confidence 99999999999999999999999999999999999999999999888888888888999999999999999999999999
Q ss_pred EEECCCCc-------------------------------eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCC-C
Q 009569 427 LLDREANF-------------------------------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD-P 474 (532)
Q Consensus 427 iwd~~~~~-------------------------------~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~-~ 474 (532)
+||+...+ ..+.+|+..|+-++|+|.-..+++|+.|..|++|.+... .
T Consensus 161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 240 (1202)
T ss_pred EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence 99986421 123468889999999999999999999999999998654 1
Q ss_pred cceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCC
Q 009569 475 KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPF 520 (532)
Q Consensus 475 ~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~ 520 (532)
=.+-+.++|.+.+.. +.| +|...+|++.|+|+.|+|||+....
T Consensus 241 WEvDtcrgH~nnVss--vlf-hp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 241 WEVDTCRGHYNNVSS--VLF-HPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred eeehhhhcccCCcce--EEe-cCccceeEecCCCccEEEEeccccc
Confidence 245677899998544 555 9999999999999999999998654
No 56
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.1e-27 Score=243.66 Aligned_cols=250 Identities=13% Similarity=0.166 Sum_probs=194.8
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCee----------EEEEEeecCCCCeEEEEeCC-CCCEEEEeeCCC
Q 009569 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQV----------SLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEE 339 (532)
Q Consensus 271 h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~----------~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg 339 (532)
|-..|.....++++..+++++.+..+..|+...+..+ .....+.+|.+.|.+++|+| ++++|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 4455666677778777777777777777876532211 01124678999999999999 889999999999
Q ss_pred cEEEEECCCC-------cEEEEeeccCCceEEEEEeeCC-CeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEee
Q 009569 340 AIRRWDVNSG-------ECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD 411 (532)
Q Consensus 340 ~i~iwd~~~~-------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 411 (532)
+|++||+.++ .++..+.+|...|.+++|+|++ ++|++|+.|++|++||++++........+...|.+++|+|
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 9999999765 3567788999999999999975 6899999999999999998766655555666899999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCc--eeeeecCCc-eeEEEEcCCCCEEEEEe----cCCeEEEEecCCCCcceeEEeccc
Q 009569 412 DGKRIISICREAAILLLDREANF--ERWIEEEEV-ITSFSLSKDNKYLLVNL----INQEIHLWSIESDPKLVSRYKGHK 484 (532)
Q Consensus 412 ~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~-i~~~~~sp~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~ 484 (532)
+|.+|++++.|+.|++||++++. ..+..|... +..+.|.+++..+++++ .|+.|++||+++...++.....+.
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~ 258 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ 258 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCC
Confidence 99999999999999999999887 444556544 45778999888887654 478999999987645555554443
Q ss_pred cceEEEEEccCCCCCcEEEEEe-CCCcEEEEeCCCCCce
Q 009569 485 RARFVIRSCFGGFEQAFIASGS-EDSQVNIFLSFSPFAK 522 (532)
Q Consensus 485 ~~~~~i~~~~~s~d~~~l~sgs-~dg~i~iw~~~~~~~~ 522 (532)
... +...++++++++|++++ .||.|++|++.++...
T Consensus 259 ~~~--~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 259 SSA--LFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred CCc--eEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence 322 22344499999999887 5999999999987643
No 57
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=5.9e-28 Score=211.48 Aligned_cols=245 Identities=19% Similarity=0.309 Sum_probs=209.5
Q ss_pred EcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEEC
Q 009569 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (532)
Q Consensus 267 ~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 346 (532)
.++||..+++.+.++.+|.+|.+|+.|.++.||-..++ +.+-++.+|++.|+++....+.+++++|+.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG---erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG---ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCC---ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEc
Confidence 47899999999999999999999999999999988766 466889999999999999999999999999999999999
Q ss_pred CCCcEEEEeeccCCceEEEEEeeCCCeEEEEeC-----CCcEEEEECCC-------Ce-EEEeecCccCceEEEEEeeCC
Q 009569 347 NSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-----DKSICLWDLDG-------RE-LESWKGQKTLRISDMAITDDG 413 (532)
Q Consensus 347 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~-------~~-~~~~~~~~~~~v~~~~~s~~~ 413 (532)
++|+++..++ ...+|..+.|+++|++++.... .+.|.++|++. .+ ...+.... ..++.+.|.|-+
T Consensus 82 ~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~-skit~a~Wg~l~ 159 (327)
T KOG0643|consen 82 ETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD-SKITSALWGPLG 159 (327)
T ss_pred CCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc-cceeeeeecccC
Confidence 9999999887 4667999999999999888764 35799999972 33 34444444 589999999999
Q ss_pred CEEEEEECCCeEEEEECCCCc---eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcce-------------
Q 009569 414 KRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLV------------- 477 (532)
Q Consensus 414 ~~l~~~~~dg~I~iwd~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~------------- 477 (532)
++|++|..||.|.+||.+++. .....|...|+.+.++||..++++++.|.+-++||+.+. +.+
T Consensus 160 ~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl-~v~Kty~te~PvN~aa 238 (327)
T KOG0643|consen 160 ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL-EVLKTYTTERPVNTAA 238 (327)
T ss_pred CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce-eeEEEeeeccccccee
Confidence 999999999999999999986 334568889999999999999999999999999998763 222
Q ss_pred ------------------------------------------eEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEe
Q 009569 478 ------------------------------------------SRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFL 515 (532)
Q Consensus 478 ------------------------------------------~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~ 515 (532)
..+++|-.++.. ++| +|+|+..++|++||.|++..
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINs--vAf-hPdGksYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINS--VAF-HPDGKSYSSGGEDGYVRLHH 315 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcce--eEE-CCCCcccccCCCCceEEEEE
Confidence 233556666444 455 99999999999999999988
Q ss_pred CCCCC
Q 009569 516 SFSPF 520 (532)
Q Consensus 516 ~~~~~ 520 (532)
+....
T Consensus 316 Fd~~Y 320 (327)
T KOG0643|consen 316 FDSNY 320 (327)
T ss_pred eccch
Confidence 77643
No 58
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.4e-28 Score=207.99 Aligned_cols=262 Identities=17% Similarity=0.266 Sum_probs=221.6
Q ss_pred cccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecC
Q 009569 237 CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h 316 (532)
..++.+.+..+.+|+.+. +.++++..+|..+|..++.+.|...+++|+.|+.|.+||++++ +..+.+.+|
T Consensus 31 Y~ltcGsdrtvrLWNp~r-------g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG---kv~Rr~rgH 100 (307)
T KOG0316|consen 31 YCLTCGSDRTVRLWNPLR-------GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG---KVDRRFRGH 100 (307)
T ss_pred EEEEcCCCceEEeecccc-------cceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC---eeeeecccc
Confidence 445777888899997664 6889999999999999999999999999999999999999988 677899999
Q ss_pred CCCeEEEEeCCCCCEEEEeeCCCcEEEEECCC--CcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEE
Q 009569 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS--GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELE 394 (532)
Q Consensus 317 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 394 (532)
.+.|+.+.|+.+...+++|+.|.++++||.++ .++++++......|.++... +..|++|+.||+++.||++.+.+.
T Consensus 101 ~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~ 178 (307)
T KOG0316|consen 101 LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLS 178 (307)
T ss_pred cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceee
Confidence 99999999999999999999999999999975 46788888888889999885 678999999999999999987776
Q ss_pred EeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--eeeeecCCc--eeEEEEcCCCCEEEEEecCCeEEEEec
Q 009569 395 SWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEV--ITSFSLSKDNKYLLVNLINQEIHLWSI 470 (532)
Q Consensus 395 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~--i~~~~~sp~~~~l~~~~~dg~i~iwd~ 470 (532)
.-...+ +|++++|++|++..++++.|+++++.|-.+++ ..+.+|... -...+++.....+++|++||.|++||+
T Consensus 179 sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 179 SDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred hhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEe
Confidence 555554 79999999999999999999999999999998 666677654 345677777889999999999999999
Q ss_pred CCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeC
Q 009569 471 ESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLS 516 (532)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~ 516 (532)
... ..+..+..+.. +.+..+.+ +|.-.-++++. ++.+..|--
T Consensus 257 vd~-~~~sk~~~~~~-v~v~dl~~-hp~~~~f~~A~-~~~~~~~~~ 298 (307)
T KOG0316|consen 257 VDE-TQISKLSVVST-VIVTDLSC-HPTMDDFITAT-GHGDLFWYQ 298 (307)
T ss_pred ccc-eeeeeeccCCc-eeEEeeec-ccCccceeEec-CCceeceee
Confidence 987 77777776654 34455666 77766666664 445666653
No 59
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=3.7e-28 Score=212.17 Aligned_cols=248 Identities=19% Similarity=0.311 Sum_probs=215.5
Q ss_pred EEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCC-CCCEEEEeeCCCcEEEE
Q 009569 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRW 344 (532)
Q Consensus 266 ~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iw 344 (532)
+.+++|...|.+++|+.+|..||+|+.|+++.+|++... .+.......+|.+.|-.++|+| ....+++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 456789999999999999999999999999999999855 4444556788999999999998 45799999999999999
Q ss_pred ECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCe
Q 009569 345 DVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAA 424 (532)
Q Consensus 345 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 424 (532)
|++++++........+.+ -+.|+|+|.++++++.|..|.+.|.++..+........ .+..++|+.++.+++.....|.
T Consensus 93 d~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~-e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF-EVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred EeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc-eeeeeeecCCCCEEEEecCCce
Confidence 999999999888766665 47899999999999999999999999876665555444 7899999988888888788899
Q ss_pred EEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEE
Q 009569 425 ILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFI 502 (532)
Q Consensus 425 I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l 502 (532)
|.|......+ ..+..|.....||.|+|+|+|+++|+.|-.+.+||+... -+++.+..+.-++.. +.| +.||++|
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~isRldwpVRT--lSF-S~dg~~l 246 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCISRLDWPVRT--LSF-SHDGRML 246 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh-hhheeeccccCceEE--EEe-ccCccee
Confidence 9999988766 677789999999999999999999999999999999887 788888888887444 555 8999999
Q ss_pred EEEeCCCcEEEEeCCCCC
Q 009569 503 ASGSEDSQVNIFLSFSPF 520 (532)
Q Consensus 503 ~sgs~dg~i~iw~~~~~~ 520 (532)
|+||+|-.|-|=++++|.
T Consensus 247 ASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 247 ASASEDHFIDIAEVETGD 264 (313)
T ss_pred eccCccceEEeEecccCC
Confidence 999999999888888774
No 60
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=8.3e-28 Score=215.35 Aligned_cols=248 Identities=20% Similarity=0.223 Sum_probs=208.5
Q ss_pred cceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCC--EEEEeeCCC
Q 009569 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH--QLLTCGQEE 339 (532)
Q Consensus 262 ~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~--~l~s~~~dg 339 (532)
..++..++.|.++|++++. ++.|+|+||.|-+|+|||+... .....+-.|.+.|+++.|.++-. .|++|+.||
T Consensus 33 l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~---~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG 107 (362)
T KOG0294|consen 33 LKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKR---KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDG 107 (362)
T ss_pred eeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccch---hhhcceeccccceEEEEecCCcchhheeeecCCC
Confidence 4556778899999999998 6899999999999999999865 34466778999999999999765 899999999
Q ss_pred cEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEE
Q 009569 340 AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISI 419 (532)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 419 (532)
.|.+|++....++..++.|.+.|+.++.+|.+++.++.+.|+.+++||+-.+.......-.. ..+.+.|+|.|.+++.+
T Consensus 108 ~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 108 HIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFVVS 186 (362)
T ss_pred cEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999996544333222222 34559999999998887
Q ss_pred ECCCeEEEEECCCCc-eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCC
Q 009569 420 CREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE 498 (532)
Q Consensus 420 ~~dg~I~iwd~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d 498 (532)
..+ .|-+|.+.+.. ...+.....+.|+.|- ++.+|++|..|+.|.+||..+. .+...+.+|...+-.+...- .|+
T Consensus 187 ~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~RVK~i~~~~-~~~ 262 (362)
T KOG0294|consen 187 GRN-KIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHENRVKDIASYT-NPE 262 (362)
T ss_pred ecc-EEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCC-ccceeeecchhheeeeEEEe-cCC
Confidence 765 78899988776 3333444567777776 5678999999999999999886 89999999999876665444 788
Q ss_pred CcEEEEEeCCCcEEEEeCCCC
Q 009569 499 QAFIASGSEDSQVNIFLSFSP 519 (532)
Q Consensus 499 ~~~l~sgs~dg~i~iw~~~~~ 519 (532)
+.+|+|+|.||.|+|||++..
T Consensus 263 ~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 263 HEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ceEEEEeccCceEEEEEcccc
Confidence 999999999999999999875
No 61
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.9e-28 Score=238.12 Aligned_cols=278 Identities=20% Similarity=0.281 Sum_probs=230.3
Q ss_pred HHHHHHHhcccccccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecC
Q 009569 225 LVEKALDVQRDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED 304 (532)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~ 304 (532)
.....++|... ..+..+....+.+|+..+. +.......+.+.|+++.|+++|.+||+|..+|.|.|||..+.
T Consensus 178 fY~nlldWss~-n~laValg~~vylW~~~s~-------~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~ 249 (484)
T KOG0305|consen 178 FYLNLLDWSSA-NVLAVALGQSVYLWSASSG-------SVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ 249 (484)
T ss_pred HhhhHhhcccC-CeEEEEecceEEEEecCCC-------ceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc
Confidence 44455666643 3444455557888876653 334444445899999999999999999999999999999865
Q ss_pred CeeEEEEEeec-CCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEE-eeccCCceEEEEEeeCCCeEEEEeCCCc
Q 009569 305 GQVSLKHRLSG-HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV-YEKTGVGLISCGWFLDGGGIFAGMTDKS 382 (532)
Q Consensus 305 ~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 382 (532)
+....+.+ |...|.+++|+ +..+.+|+.++.|..+|++..+.... +.+|...|+.+.|++|+.++++|+.|+.
T Consensus 250 ---k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~ 324 (484)
T KOG0305|consen 250 ---KKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNV 324 (484)
T ss_pred ---cccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccc
Confidence 34566667 99999999997 67899999999999999998876554 8889999999999999999999999999
Q ss_pred EEEEECCCCeEEEeecCccCceEEEEEee-CCCEEEEEE--CCCeEEEEECCCCc-eeeeecCCceeEEEEcCCCCEEEE
Q 009569 383 ICLWDLDGRELESWKGQKTLRISDMAITD-DGKRIISIC--REAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLV 458 (532)
Q Consensus 383 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~--~dg~I~iwd~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~ 458 (532)
+.|||............|...|.+++|+| ....||+|+ .|++|++||..++. .........|.++.|++..+-|++
T Consensus 325 ~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~s 404 (484)
T KOG0305|consen 325 VFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLS 404 (484)
T ss_pred eEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEE
Confidence 99999976555555556666999999999 456788765 79999999999988 667778889999999999977776
Q ss_pred E--ecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC
Q 009569 459 N--LINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSP 519 (532)
Q Consensus 459 ~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~ 519 (532)
+ ..++.|.||+..+. +.+..+.+|... ++.+.. +|||..|++|+.|.++++|++-+.
T Consensus 405 thG~s~n~i~lw~~ps~-~~~~~l~gH~~R--Vl~la~-SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 405 THGYSENQITLWKYPSM-KLVAELLGHTSR--VLYLAL-SPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ecCCCCCcEEEEecccc-ceeeeecCCcce--eEEEEE-CCCCCEEEEecccCcEEeccccCC
Confidence 5 45778999999997 899999999998 455666 999999999999999999999874
No 62
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6e-28 Score=233.71 Aligned_cols=266 Identities=14% Similarity=0.198 Sum_probs=218.1
Q ss_pred cccCCCCCc-eeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCC
Q 009569 239 FHNTSDSDF-SLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317 (532)
Q Consensus 239 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (532)
||+.....+ .+|+..-+..+.-+...+..++-..-+|.++.|-+..+++++|+.|..|+||+.++. ..++.+..|.
T Consensus 21 ~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~---ekV~~FeAH~ 97 (794)
T KOG0276|consen 21 FHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG---EKVKTFEAHS 97 (794)
T ss_pred cCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc---eeeEEeeccc
Confidence 455544333 233333332223335567788888899999999999999999999999999999876 5678999999
Q ss_pred CCeEEEEeCCCCCEEEEeeCCCcEEEEECCCC-cEEEEeeccCCceEEEEEee-CCCeEEEEeCCCcEEEEECCCCeEEE
Q 009569 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG-ECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELES 395 (532)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~ 395 (532)
.-|.+++.+|...+++++|.|-+|++||.+.+ .+.++|++|...|.+++|+| |.+.+++++-|++|++|.+.......
T Consensus 98 DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf 177 (794)
T KOG0276|consen 98 DYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF 177 (794)
T ss_pred cceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCce
Confidence 99999999999999999999999999999764 68899999999999999999 78899999999999999997655544
Q ss_pred eecCccCceEEEEEeeCC--CEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecC
Q 009569 396 WKGQKTLRISDMAITDDG--KRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (532)
Q Consensus 396 ~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~ 471 (532)
....|...|+|+.+-+-| .++++|+.|.+|+|||..+.. .++.+|...|..+.|+|.-..+++|++||+++||+..
T Consensus 178 Tl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~ 257 (794)
T KOG0276|consen 178 TLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSK 257 (794)
T ss_pred eeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCc
Confidence 444666699999998844 699999999999999999988 7888999999999999999999999999999999988
Q ss_pred CCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcE
Q 009569 472 SDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQV 511 (532)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i 511 (532)
+. ++..++.-.-..++.+.. .+.+..++.|...|.|
T Consensus 258 Ty-~lE~tLn~gleRvW~I~~---~k~~~~i~vG~Deg~i 293 (794)
T KOG0276|consen 258 TY-KLEKTLNYGLERVWCIAA---HKGDGKIAVGFDEGSV 293 (794)
T ss_pred ce-ehhhhhhcCCceEEEEee---cCCCCeEEEeccCCcE
Confidence 76 666666555555555433 4555566766666654
No 63
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=3.1e-28 Score=230.82 Aligned_cols=262 Identities=19% Similarity=0.259 Sum_probs=209.4
Q ss_pred CCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCC-eeEEEEE-eecCCCCeEEEEeCCCCCEEEEe
Q 009569 258 NRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG-QVSLKHR-LSGHRKPVFTVSWSPNDHQLLTC 335 (532)
Q Consensus 258 ~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~-~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~ 335 (532)
..+|...-..+++|+..|.++++.|.|..|++||.|.+|++||+..-. ..+..+. .......|.++.|++.|..|++.
T Consensus 153 ~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvv 232 (641)
T KOG0772|consen 153 KLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVV 232 (641)
T ss_pred hcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEE
Confidence 457777888899999999999999999999999999999999997311 1111122 22345679999999999999999
Q ss_pred eCCCcEEEEECCCCcEEEE------------eeccCCceEEEEEeeC-CCeEEEEeCCCcEEEEECCCC--eEEEee--c
Q 009569 336 GQEEAIRRWDVNSGECLHV------------YEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGR--ELESWK--G 398 (532)
Q Consensus 336 ~~dg~i~iwd~~~~~~~~~------------~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~--~~~~~~--~ 398 (532)
+.....+++|-...+.... -++|...++|.+|+|. ...|++++.||++++||+... +...+. .
T Consensus 233 sg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~ 312 (641)
T KOG0772|consen 233 SGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP 312 (641)
T ss_pred ecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc
Confidence 9999999999754443332 2478889999999995 456889999999999999752 122221 1
Q ss_pred --CccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc-----eeeeecCC--ceeEEEEcCCCCEEEEEecCCeEEEEe
Q 009569 399 --QKTLRISDMAITDDGKRIISICREAAILLLDREANF-----ERWIEEEE--VITSFSLSKDNKYLLVNLINQEIHLWS 469 (532)
Q Consensus 399 --~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~-----~~~~~~~~--~i~~~~~sp~~~~l~~~~~dg~i~iwd 469 (532)
...-.++.++|+|||++||+|+.||.|.+|+..+.. .....|.. .|+|++||+||++|++-+.|+++++||
T Consensus 313 ~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD 392 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD 392 (641)
T ss_pred CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence 122368999999999999999999999999986654 23345665 899999999999999999999999999
Q ss_pred cCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeC------CCcEEEEeCCCCC
Q 009569 470 IESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE------DSQVNIFLSFSPF 520 (532)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~------dg~i~iw~~~~~~ 520 (532)
++...+++....+.........||| ||+.++|++|+. .|.+++||..+-.
T Consensus 393 Lrq~kkpL~~~tgL~t~~~~tdc~F-SPd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 393 LRQFKKPLNVRTGLPTPFPGTDCCF-SPDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred ccccccchhhhcCCCccCCCCcccc-CCCceEEEecccccCCCCCceEEEEecccee
Confidence 9998889988887766655677888 999999999864 5779999987743
No 64
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=9e-27 Score=237.91 Aligned_cols=228 Identities=11% Similarity=0.197 Sum_probs=180.5
Q ss_pred EeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCC-CCEEEEeeCCCcEEEEECCCCc--------EEEEeeccCC
Q 009569 290 SSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNSGE--------CLHVYEKTGV 360 (532)
Q Consensus 290 ~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~ 360 (532)
|+.++.|++|+.... ..+..+.+|.+.|.+++|+|+ +.+|++|+.|++|++||+.++. ++..+.+|..
T Consensus 50 GG~~gvI~L~~~~r~---~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRK---PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCC---ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 667889999998643 456788999999999999996 7899999999999999997642 3456788999
Q ss_pred ceEEEEEeeCCCeE-EEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--eee
Q 009569 361 GLISCGWFLDGGGI-FAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERW 437 (532)
Q Consensus 361 ~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~ 437 (532)
.|.+++|+|++..+ ++++.|++|++||++++.......+ ...|.+++|+|+|.+|++++.|+.|++||++++. ..+
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~-~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM-PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec-CCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 99999999988765 6889999999999987654433333 3479999999999999999999999999999987 455
Q ss_pred eecCCceeE-----EEEcCCCCEEEEEecCC----eEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCC
Q 009569 438 IEEEEVITS-----FSLSKDNKYLLVNLINQ----EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED 508 (532)
Q Consensus 438 ~~~~~~i~~-----~~~sp~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~d 508 (532)
..|.+.+.+ ..|++++.+|++++.++ +|+|||+++...++..+..+.... .+...+..+++.++++|+.|
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~-~L~p~~D~~tg~l~lsGkGD 284 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASA-PLIPHYDESTGLIYLIGKGD 284 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCcc-ceEEeeeCCCCCEEEEEECC
Confidence 667665433 34568999999988774 799999996546776665443322 23233336678999999999
Q ss_pred CcEEEEeCCCCCce
Q 009569 509 SQVNIFLSFSPFAK 522 (532)
Q Consensus 509 g~i~iw~~~~~~~~ 522 (532)
+.|++|++..+...
T Consensus 285 ~tIr~~e~~~~~~~ 298 (568)
T PTZ00420 285 GNCRYYQHSLGSIR 298 (568)
T ss_pred CeEEEEEccCCcEE
Confidence 99999999876543
No 65
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=9.8e-27 Score=236.68 Aligned_cols=214 Identities=20% Similarity=0.308 Sum_probs=176.3
Q ss_pred EcccccccEEEEEEcc-CCCEEEEEeCCCeEEEEEeecCCe----eEEEEEeecCCCCeEEEEeCCCC-CEEEEeeCCCc
Q 009569 267 ILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQ----VSLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEA 340 (532)
Q Consensus 267 ~l~~h~~~V~~v~~s~-~g~~las~s~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~ 340 (532)
.+.+|.+.|++++|+| ++++||+|+.|++|++||+.+++. ...+..+.+|...|.+++|+|++ ++|++++.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999 889999999999999999975431 13456788999999999999985 69999999999
Q ss_pred EEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEE-eecCccCceEEEEEeeCCCEEEEE
Q 009569 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES-WKGQKTLRISDMAITDDGKRIISI 419 (532)
Q Consensus 341 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~ 419 (532)
|+|||+.+++.+..+..|...|.+++|+|++.+|++++.|+.|++||++++.... ...+....+..+.|.+++..++++
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence 9999999999999999999999999999999999999999999999998765544 333333345678899988888776
Q ss_pred E----CCCeEEEEECCCCc--eeee--ecCCceeEEEEcCCCCEEEEEe-cCCeEEEEecCCCCcceeEEe
Q 009569 420 C----REAAILLLDREANF--ERWI--EEEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYK 481 (532)
Q Consensus 420 ~----~dg~I~iwd~~~~~--~~~~--~~~~~i~~~~~sp~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 481 (532)
+ .|+.|++||+++.. .... .....+....|++++++|++++ .|+.|++||+.++ .++....
T Consensus 230 G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~-~~~~~~~ 299 (493)
T PTZ00421 230 GCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE-RLTFCSS 299 (493)
T ss_pred ecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC-ceEEEee
Confidence 5 47899999998765 2222 2334566678999999999887 4999999999987 5555443
No 66
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=5.4e-28 Score=238.51 Aligned_cols=270 Identities=16% Similarity=0.227 Sum_probs=224.8
Q ss_pred cccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEc-cCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeec
Q 009569 237 CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFS-HDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG 315 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s-~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~ 315 (532)
.++....+..+.+++..+ .++...+-|..++|..|+|- |+.++||.++..+.+++|+..+. ....+.+
T Consensus 295 ~~l~vtaeQnl~l~d~~~-------l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~----~c~ii~G 363 (775)
T KOG0319|consen 295 QLLLVTAEQNLFLYDEDE-------LTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTS----YCQIIPG 363 (775)
T ss_pred ceEEEEccceEEEEEccc-------cEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCC----ceEEEeC
Confidence 344445555666664332 45667788899999999875 57789999999999999988754 2347889
Q ss_pred CCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCc----EEEEeeccCCceEEEEEeeC-CCeEEEEeCCCcEEEEECCC
Q 009569 316 HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE----CLHVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDG 390 (532)
Q Consensus 316 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~ 390 (532)
|+..|.++....+|.+|+||+.|.++++|.++.+. ++....+|.+.|.+++++.. ..+|++++.|+++++|++..
T Consensus 364 H~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~ 443 (775)
T KOG0319|consen 364 HTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPK 443 (775)
T ss_pred chhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCC
Confidence 99999999966678899999999999999884443 45567789999999999764 45788999999999999975
Q ss_pred Ce----E-----EEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEE
Q 009569 391 RE----L-----ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVN 459 (532)
Q Consensus 391 ~~----~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~ 459 (532)
.+ . ......|...|++++++|+.+++++|+.|.+.++|++.... ..+.+|...|.++.|+|..+.++++
T Consensus 444 s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~ 523 (775)
T KOG0319|consen 444 SKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATC 523 (775)
T ss_pred cccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEec
Confidence 11 1 11223455689999999999999999999999999999766 7788999999999999999999999
Q ss_pred ecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCCc
Q 009569 460 LINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPFA 521 (532)
Q Consensus 460 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~~ 521 (532)
+.|.+|+||.+.+. .++++|.||... +.++.| -.+|..|++++.||-|++|+++++..
T Consensus 524 SgD~TvKIW~is~f-SClkT~eGH~~a--Vlra~F-~~~~~qliS~~adGliKlWnikt~eC 581 (775)
T KOG0319|consen 524 SGDKTVKIWSISTF-SCLKTFEGHTSA--VLRASF-IRNGKQLISAGADGLIKLWNIKTNEC 581 (775)
T ss_pred cCCceEEEEEeccc-eeeeeecCccce--eEeeee-eeCCcEEEeccCCCcEEEEeccchhh
Confidence 99999999999998 999999999998 567888 67889999999999999999998753
No 67
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=4.5e-27 Score=239.38 Aligned_cols=265 Identities=19% Similarity=0.325 Sum_probs=224.7
Q ss_pred ccccccCCCCCceeeccCCccCCCCCcceeEE-cccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEee
Q 009569 236 SCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS 314 (532)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~ 314 (532)
..+..+..+..+.+|+.. +...+.. +.||.+.|+++++..-+.++++|+.|.++++||..++ .+...+.
T Consensus 219 ~~~~~~s~~~tl~~~~~~-------~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg---~C~~~l~ 288 (537)
T KOG0274|consen 219 GFFKSGSDDSTLHLWDLN-------NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG---ECTHSLQ 288 (537)
T ss_pred CeEEecCCCceeEEeecc-------cceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC---cEEEEec
Confidence 344455666666677544 3566666 9999999999999887889999999999999999887 5778899
Q ss_pred cCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEE
Q 009569 315 GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELE 394 (532)
Q Consensus 315 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 394 (532)
+|.+.|.++... ..++++|+.|.+|++|++.++.++..+.+|.++|.++..+ +.++++|+.|++|++||+.+.++.
T Consensus 289 gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl 364 (537)
T KOG0274|consen 289 GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCL 364 (537)
T ss_pred CCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceee
Confidence 999999999875 4578889999999999999999999999999999999986 889999999999999999988877
Q ss_pred EeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCC-c--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecC
Q 009569 395 SWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN-F--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (532)
Q Consensus 395 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~-~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~ 471 (532)
.....|...|+++.+.+. ..+++|+.|+.|++||+++. + ..+..|..-+.++.+ .+++|++++.|++|++||..
T Consensus 365 ~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 365 KSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAE 441 (537)
T ss_pred eeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecc
Confidence 777778889999988765 79999999999999999999 5 667777777766655 47899999999999999999
Q ss_pred CCCcceeEEec-cccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCCcee
Q 009569 472 SDPKLVSRYKG-HKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPFAKK 523 (532)
Q Consensus 472 ~~~~~~~~~~~-~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~~~~ 523 (532)
++ ++++++.+ |...+.. .++ ....+++++.||.+++||+.++....
T Consensus 442 ~~-~~~~~~~~~~~~~v~~--l~~---~~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 442 EG-ECLRTLEGRHVGGVSA--LAL---GKEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred cC-ceeeeeccCCcccEEE--eec---CcceEEEEecCCeeEEEecccCchhh
Confidence 98 89999998 4555443 322 24678889999999999999987554
No 68
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2.3e-27 Score=234.17 Aligned_cols=262 Identities=13% Similarity=0.272 Sum_probs=226.8
Q ss_pred ccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCC
Q 009569 240 HNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319 (532)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 319 (532)
..+....+.+|+.++ .++++++.. +.+.+..|.|.++++++|...|.+.+||+.+. ..+.+...|.+.
T Consensus 389 ~Sga~~SikiWn~~t-------~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~---~l~Eti~AHdga 456 (888)
T KOG0306|consen 389 ASGAGESIKIWNRDT-------LKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASA---SLVETIRAHDGA 456 (888)
T ss_pred eecCCCcEEEEEccC-------cceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehh---hhhhhhhccccc
Confidence 334455777887654 577777753 38999999999999999999999999999876 455677799999
Q ss_pred eEEEEeCCCCCEEEEeeCCCcEEEEECCC-----CcEE--------EEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEE
Q 009569 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNS-----GECL--------HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLW 386 (532)
Q Consensus 320 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-----~~~~--------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 386 (532)
|++++.+||++.+++||.|.+|++||..- |... ++++ -...|.|+.++|||++++++--|+++++|
T Consensus 457 IWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVy 535 (888)
T KOG0306|consen 457 IWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVY 535 (888)
T ss_pred eeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEE
Confidence 99999999999999999999999999831 2211 1222 35679999999999999999999999999
Q ss_pred ECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCe
Q 009569 387 DLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQE 464 (532)
Q Consensus 387 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~ 464 (532)
-+++-.......+|.-+|.||..+||++.+++|+.|..|++|-+.-+. ..++.|+..|.++.|-|....+++++.|+.
T Consensus 536 flDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~k 615 (888)
T KOG0306|consen 536 FLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGK 615 (888)
T ss_pred EecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcce
Confidence 999977766666666799999999999999999999999999998776 788999999999999999999999999999
Q ss_pred EEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 465 IHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 465 i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
|+-||-... +.++++.+|...++.... +|+|.+++++|.|..|++|....
T Consensus 616 vKqWDg~kF-e~iq~L~~H~~ev~cLav---~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 616 VKQWDGEKF-EEIQKLDGHHSEVWCLAV---SPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EEeechhhh-hhheeeccchheeeeeEE---cCCCCeEEeccCCceeEeeeccC
Confidence 999999888 899999999998766544 89999999999999999998765
No 69
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=3.2e-27 Score=243.18 Aligned_cols=276 Identities=18% Similarity=0.277 Sum_probs=224.4
Q ss_pred CCCCceeeccCCccC----CCC-CcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeec--------------
Q 009569 243 SDSDFSLYSDHQCGR----NRI-PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKE-------------- 303 (532)
Q Consensus 243 ~~~~~~~~~~~~~~~----~~~-~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~-------------- 303 (532)
.|+.+.+|+-..... .+. -.+.+.....|.+.|+|+.|+|||++||+||.|+.|.||....
T Consensus 35 ~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~ 114 (942)
T KOG0973|consen 35 LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAK 114 (942)
T ss_pred ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCccccccccccc
Confidence 455666887654432 111 2456677788999999999999999999999999999999872
Q ss_pred -CCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCc
Q 009569 304 -DGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS 382 (532)
Q Consensus 304 -~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 382 (532)
-+.++....+.+|.+.|..++|+|++.+|++++.|++|.|||..+.+.+.++++|...|..+.|.|-|++|++-+.|++
T Consensus 115 ~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrt 194 (942)
T KOG0973|consen 115 NVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRT 194 (942)
T ss_pred ccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCce
Confidence 0235678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCeEEEeecC------ccCceEEEEEeeCCCEEEEEE----CCCeEEEEECCCCc--eeeeecCCceeEEEEc
Q 009569 383 ICLWDLDGRELESWKGQ------KTLRISDMAITDDGKRIISIC----REAAILLLDREANF--ERWIEEEEVITSFSLS 450 (532)
Q Consensus 383 i~iwd~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~----~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~s 450 (532)
|++|++....+...... ....+..+.|+|||.+|++.. .-.++.|.+..+.+ ..+.+|..++.++.|+
T Consensus 195 ikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFn 274 (942)
T KOG0973|consen 195 LKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFN 274 (942)
T ss_pred EEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeC
Confidence 99999765433332221 122688999999999999864 33568899888777 7889999999999999
Q ss_pred CC-----CC------------EEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEE
Q 009569 451 KD-----NK------------YLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNI 513 (532)
Q Consensus 451 p~-----~~------------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~i 513 (532)
|. .+ .+++|+.|++|.||..... +++.....-. ...+.+++| +|||..|+.+|.||+|.+
T Consensus 275 P~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~-RPl~vi~~lf-~~SI~DmsW-spdG~~LfacS~DGtV~~ 351 (942)
T KOG0973|consen 275 PKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP-RPLFVIHNLF-NKSIVDMSW-SPDGFSLFACSLDGTVAL 351 (942)
T ss_pred hHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC-Cchhhhhhhh-cCceeeeeE-cCCCCeEEEEecCCeEEE
Confidence 81 11 6789999999999998665 5554433211 223577888 999999999999999999
Q ss_pred EeCCCCCc
Q 009569 514 FLSFSPFA 521 (532)
Q Consensus 514 w~~~~~~~ 521 (532)
..++..+.
T Consensus 352 i~Fee~El 359 (942)
T KOG0973|consen 352 IHFEEKEL 359 (942)
T ss_pred EEcchHHh
Confidence 99987543
No 70
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=3.2e-28 Score=211.08 Aligned_cols=254 Identities=19% Similarity=0.304 Sum_probs=218.0
Q ss_pred CCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeC
Q 009569 258 NRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ 337 (532)
Q Consensus 258 ~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 337 (532)
..-++.-+.++++|.+.||....+.+...-|+++.|-+.+|||.-++.. ++.+ .|..-|..++|+.|.++|++|+.
T Consensus 45 ~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgde---lhsf-~hkhivk~~af~~ds~~lltgg~ 120 (334)
T KOG0278|consen 45 NGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE---LHSF-EHKHIVKAVAFSQDSNYLLTGGQ 120 (334)
T ss_pred cCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh---hhhh-hhhheeeeEEecccchhhhccch
Confidence 3344566889999999999999999999999999999999999988743 3444 48888999999999999999999
Q ss_pred CCcEEEEECCCCc-EEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEE
Q 009569 338 EEAIRRWDVNSGE-CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRI 416 (532)
Q Consensus 338 dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 416 (532)
+..++|||++..+ +...+.+|.+.|..+.|....+.|++++.|++|++||.+++.......... +|+++.++++|.++
T Consensus 121 ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s-~VtSlEvs~dG~il 199 (334)
T KOG0278|consen 121 EKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS-PVTSLEVSQDGRIL 199 (334)
T ss_pred HHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCC-CCcceeeccCCCEE
Confidence 9999999997654 567788999999999999999999999999999999999876655544443 89999999999866
Q ss_pred EEEECCCeEEEEECCCCc-eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEE-eccccceEEEEEcc
Q 009569 417 ISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRY-KGHKRARFVIRSCF 494 (532)
Q Consensus 417 ~~~~~dg~I~iwd~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~i~~~~ 494 (532)
.+ ...+.|.+||..+.. .+.......|.+.+++|+...+++|++|..++.||..++ ..+..+ ++|..++.+ +.|
T Consensus 200 Ti-a~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg-eEi~~~nkgh~gpVhc--VrF 275 (334)
T KOG0278|consen 200 TI-AYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG-EEIGSYNKGHFGPVHC--VRF 275 (334)
T ss_pred EE-ecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCC-ceeeecccCCCCceEE--EEE
Confidence 55 567799999999877 555666778999999999999999999999999999999 666665 899998655 555
Q ss_pred CCCCCcEEEEEeCCCcEEEEeCCCCCc
Q 009569 495 GGFEQAFIASGSEDSQVNIFLSFSPFA 521 (532)
Q Consensus 495 ~s~d~~~l~sgs~dg~i~iw~~~~~~~ 521 (532)
+|+|..-++||+||+|++|....++.
T Consensus 276 -SPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 276 -SPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred -CCCCceeeccCCCceEEEEEecCCCc
Confidence 99999999999999999999887643
No 71
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2.7e-28 Score=218.84 Aligned_cols=270 Identities=19% Similarity=0.268 Sum_probs=218.8
Q ss_pred cccCCCCCceeeccCCccC-CCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEee-cC
Q 009569 239 FHNTSDSDFSLYSDHQCGR-NRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS-GH 316 (532)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~-~h 316 (532)
.+++-|+.+.+|+-.+... ..+..+-...+--|.++|.|+.||.|...||+|+.||.|++|.+.++. +++.+. .|
T Consensus 229 vsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~---ClRrFdrAH 305 (508)
T KOG0275|consen 229 VSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ---CLRRFDRAH 305 (508)
T ss_pred eeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecch---HHHHhhhhh
Confidence 3444455556665333211 111112222344588999999999999999999999999999999884 445555 89
Q ss_pred CCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEe
Q 009569 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW 396 (532)
Q Consensus 317 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 396 (532)
+..|+++.||.|+..+++++.|.++++.-+.+|+++..|++|...|+...|.++|..+++++.||+|++|+..+.++...
T Consensus 306 tkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~T 385 (508)
T KOG0275|consen 306 TKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLST 385 (508)
T ss_pred ccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987655433
Q ss_pred e-c-CccCceEEEEEee-CCCEEEEEECCCeEEEEECCCCc-eeee---ecCCceeEEEEcCCCCEEEEEecCCeEEEEe
Q 009569 397 K-G-QKTLRISDMAITD-DGKRIISICREAAILLLDREANF-ERWI---EEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (532)
Q Consensus 397 ~-~-~~~~~v~~~~~s~-~~~~l~~~~~dg~I~iwd~~~~~-~~~~---~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd 469 (532)
. . ....+|+++..-| +...++++...++|++.++.... ..+. ...+...+.++||.|.++++.++|+.++.|.
T Consensus 386 fk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~ 465 (508)
T KOG0275|consen 386 FKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFS 465 (508)
T ss_pred ccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEE
Confidence 3 2 2233788888777 45688888999999999998766 2222 2345677888999999999999999999999
Q ss_pred cCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEe
Q 009569 470 IESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFL 515 (532)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~ 515 (532)
+.++ .+-+++..|...+ |...- +|..+.|++-++||.+++|.
T Consensus 466 ~~sG-~LE~tl~VhEkdv--IGl~H-HPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 466 VLSG-KLERTLPVHEKDV--IGLTH-HPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eecC-ceeeeeecccccc--ccccc-CcccchhhhhcccchhhhcC
Confidence 9998 8888999998873 44555 89999999999999999995
No 72
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=8.5e-26 Score=230.81 Aligned_cols=210 Identities=17% Similarity=0.230 Sum_probs=166.3
Q ss_pred ceeEEcccccccEEEEEEccC-CCEEEEEeCCCeEEEEEeecCCee-----EEEEEeecCCCCeEEEEeCCCCCE-EEEe
Q 009569 263 QTLQILEAHSDEVWFLQFSHD-GKYLASSSKDQSAIIWEVKEDGQV-----SLKHRLSGHRKPVFTVSWSPNDHQ-LLTC 335 (532)
Q Consensus 263 ~~~~~l~~h~~~V~~v~~s~~-g~~las~s~dg~i~iwd~~~~~~~-----~~~~~~~~h~~~v~~l~~s~~~~~-l~s~ 335 (532)
.++..+.+|.+.|++++|+|+ +.+||+|+.|++|+|||+.+++.. .....+.+|...|.+++|+|++.. |+++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 467789999999999999996 789999999999999999754321 234567899999999999999875 5789
Q ss_pred eCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEE-----EEEe
Q 009569 336 GQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISD-----MAIT 410 (532)
Q Consensus 336 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-----~~~s 410 (532)
+.|++|++||+++++.+..+. +...|.+++|+|+|.+|++++.|+.|++||++++........|.+.+.. ..|+
T Consensus 145 S~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs 223 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLG 223 (568)
T ss_pred eCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEc
Confidence 999999999999998877775 5678999999999999999999999999999987665444444433322 3355
Q ss_pred eCCCEEEEEECCC----eEEEEECCCCc--eeeeecC---CceeEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 009569 411 DDGKRIISICREA----AILLLDREANF--ERWIEEE---EVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (532)
Q Consensus 411 ~~~~~l~~~~~dg----~I~iwd~~~~~--~~~~~~~---~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~ 473 (532)
+++.++++++.++ .|++||+++.. .....+. ..+......+++.++++|..|+.|++|++..+
T Consensus 224 ~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 224 GDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 8889999988774 79999999643 3332332 23333444556889999999999999999765
No 73
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=1.5e-26 Score=211.96 Aligned_cols=249 Identities=21% Similarity=0.284 Sum_probs=204.0
Q ss_pred CcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCC---CEEEEeeC
Q 009569 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND---HQLLTCGQ 337 (532)
Q Consensus 261 ~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~---~~l~s~~~ 337 (532)
|.++++.+. |.+.|.++... +++|++|++||.+++||.. | +...++.+|.++|.+++|.-.. ..+++++.
T Consensus 95 aP~pl~~~~-hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-G---k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~ 167 (423)
T KOG0313|consen 95 APKPLQCFL-HDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-G---KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASM 167 (423)
T ss_pred CCCcccccc-chhhhhhhccc--CceEEEeecCCeeEEEecC-C---ceEEEEecCCcceeeeEEEecCCccceEEEecC
Confidence 344444444 89999999887 7899999999999999987 3 4668889999999988885533 36999999
Q ss_pred CCcEEEEECCCCcEE----EEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCC-----------------------
Q 009569 338 EEAIRRWDVNSGECL----HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG----------------------- 390 (532)
Q Consensus 338 dg~i~iwd~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------------------- 390 (532)
|.++++|-++.++.. ....+|...|-++...++|..+++|+.|..|.+|+...
T Consensus 168 Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~ 247 (423)
T KOG0313|consen 168 DQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEG 247 (423)
T ss_pred CceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcc
Confidence 999999999877543 34458999999999999999999999999999999321
Q ss_pred --CeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc-eeeeecCCceeEEEEcCCCCEEEEEecCCeEEE
Q 009569 391 --RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHL 467 (532)
Q Consensus 391 --~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i 467 (532)
+........|..+|.++.|++ ...+++++.|.+|+.||+.++. .........+++++.+|..++|++|+.|..|++
T Consensus 248 ~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl 326 (423)
T KOG0313|consen 248 GTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRL 326 (423)
T ss_pred cccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceee
Confidence 112233345666999999998 6689999999999999999988 555667788999999999999999999999999
Q ss_pred EecCCCC--cceeEEeccccceEEEEEccCCC-CCcEEEEEeCCCcEEEEeCCCCC
Q 009569 468 WSIESDP--KLVSRYKGHKRARFVIRSCFGGF-EQAFIASGSEDSQVNIFLSFSPF 520 (532)
Q Consensus 468 wd~~~~~--~~~~~~~~~~~~~~~i~~~~~s~-d~~~l~sgs~dg~i~iw~~~~~~ 520 (532)
||.+++. -..++|.+|.+-+.. +.| +| +...|++|+.||++++||+++.+
T Consensus 327 ~DPR~~~gs~v~~s~~gH~nwVss--vkw-sp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 327 WDPRTGDGSVVSQSLIGHKNWVSS--VKW-SPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred cCCCCCCCceeEEeeecchhhhhh--eec-CCCCceEEEEEecCCeEEEEEeccCC
Confidence 9998763 345678999986544 445 44 45678999999999999999865
No 74
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.7e-27 Score=201.71 Aligned_cols=255 Identities=16% Similarity=0.262 Sum_probs=207.9
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCC--CCCEEEEeeCCCcEEEEE
Q 009569 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQEEAIRRWD 345 (532)
Q Consensus 268 l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~iwd 345 (532)
-..|.+.|..+...-.|+.||||+.|++|+|+.++.++....+.++.+|.++|..++|.. -|.+|++|+.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 346999999999989999999999999999999998877678899999999999999976 689999999999999999
Q ss_pred CCCCcE--EEEeeccCCceEEEEEeeC--CCeEEEEeCCCcEEEEECCCC---eEEEeecCccCceEEEEEeeC---C--
Q 009569 346 VNSGEC--LHVYEKTGVGLISCGWFLD--GGGIFAGMTDKSICLWDLDGR---ELESWKGQKTLRISDMAITDD---G-- 413 (532)
Q Consensus 346 ~~~~~~--~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~---~-- 413 (532)
-.+++- ...+..|...|++++|.|. |-.|++++.||.|.+.+.++. ....+...|...|++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 988753 3455678999999999984 567889999999999988643 334445556668999999985 4
Q ss_pred ---------CEEEEEECCCeEEEEECCCCc----eeeeecCCceeEEEEcCCC----CEEEEEecCCeEEEEecCCCCcc
Q 009569 414 ---------KRIISICREAAILLLDREANF----ERWIEEEEVITSFSLSKDN----KYLLVNLINQEIHLWSIESDPKL 476 (532)
Q Consensus 414 ---------~~l~~~~~dg~I~iwd~~~~~----~~~~~~~~~i~~~~~sp~~----~~l~~~~~dg~i~iwd~~~~~~~ 476 (532)
+.|++|+.|..|+||+..+.. ..+..|...|..++|.|.- .+|++++.||++.||........
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 569999999999999999865 5578999999999999964 68999999999999987633111
Q ss_pred --eeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCC-CCceeee
Q 009569 477 --VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFS-PFAKKIK 525 (532)
Q Consensus 477 --~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~-~~~~~~~ 525 (532)
...+...... +.++.| ++.|++|+.++.|++|.+|.-+. |+..++.
T Consensus 247 wk~tll~~f~~~--~w~vSW-S~sGn~LaVs~GdNkvtlwke~~~Gkw~~v~ 295 (299)
T KOG1332|consen 247 WKKTLLEEFPDV--VWRVSW-SLSGNILAVSGGDNKVTLWKENVDGKWEEVG 295 (299)
T ss_pred ccccccccCCcc--eEEEEE-eccccEEEEecCCcEEEEEEeCCCCcEEEcc
Confidence 1122223334 344666 88999999999999999998764 4544443
No 75
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.5e-27 Score=206.15 Aligned_cols=227 Identities=16% Similarity=0.335 Sum_probs=192.3
Q ss_pred ccccccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEcc-CCCEEEEEeCCCeEEEEEeecCCeeEEEEE
Q 009569 234 RDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHR 312 (532)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~-~g~~las~s~dg~i~iwd~~~~~~~~~~~~ 312 (532)
....++...+|+.+.+|+. ..|..+++.++.|..+|.++.|++ ++..++++|.|++|++|+.... ..+.+
T Consensus 72 ~e~~~~~a~GDGSLrl~d~------~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~---~Sv~T 142 (311)
T KOG0277|consen 72 HENQVIAASGDGSLRLFDL------TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP---NSVQT 142 (311)
T ss_pred CcceEEEEecCceEEEecc------CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC---cceEe
Confidence 3445667889999999983 346789999999999999999999 6677888999999999998755 45688
Q ss_pred eecCCCCeEEEEeCC-CCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEee-CCCeEEEEeCCCcEEEEECCC
Q 009569 313 LSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDG 390 (532)
Q Consensus 313 ~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 390 (532)
+.+|...|....|+| ..+.+++++.|+++++||++.......+..|...+.++.|+. +.+.+++|+.|+.|+.||++.
T Consensus 143 f~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~ 222 (311)
T KOG0277|consen 143 FNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRN 222 (311)
T ss_pred ecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhh
Confidence 999999999999999 578999999999999999976554555888999999999997 677889999999999999986
Q ss_pred --CeEEEeecCccCceEEEEEeeC-CCEEEEEECCCeEEEEECCCCc---eeeeecCCceeEEEEcC-CCCEEEEEecCC
Q 009569 391 --RELESWKGQKTLRISDMAITDD-GKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSK-DNKYLLVNLINQ 463 (532)
Q Consensus 391 --~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~I~iwd~~~~~---~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg 463 (532)
..+..+ ..|.-.|..++|||. ...|++++.|-+++|||..... .+...|..-+..+.||+ ++.++++++.|+
T Consensus 223 ~r~pl~eL-~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe 301 (311)
T KOG0277|consen 223 LRTPLFEL-NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDE 301 (311)
T ss_pred ccccceee-cCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeeccccc
Confidence 233333 455569999999995 4588999999999999998655 55567888899999998 568999999999
Q ss_pred eEEEEec
Q 009569 464 EIHLWSI 470 (532)
Q Consensus 464 ~i~iwd~ 470 (532)
.++||+.
T Consensus 302 ~l~Vw~p 308 (311)
T KOG0277|consen 302 LLYVWNP 308 (311)
T ss_pred ceeeecc
Confidence 9999984
No 76
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=2.5e-27 Score=219.27 Aligned_cols=266 Identities=17% Similarity=0.289 Sum_probs=219.3
Q ss_pred ccccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeec
Q 009569 236 SCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG 315 (532)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~ 315 (532)
..+++++.|..|.+|.-.... ...+.+|.|..+.|+++.|.+++.++++++.|+.+++|++... ....++.+
T Consensus 188 dtlatgg~Dr~Ik~W~v~~~k-----~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~---r~~~TLsG 259 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVLGEK-----SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL---RLRHTLSG 259 (459)
T ss_pred chhhhcchhhhhhhhhcccch-----hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch---hhhhhhcc
Confidence 345566777777777543211 3467788999999999999999999999999999999999855 56789999
Q ss_pred CCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEE
Q 009569 316 HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES 395 (532)
Q Consensus 316 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 395 (532)
|+..|+++.|......+++|+.|.+|++||+....|..++-. ...+..++.. ...+++|..|+.|++||.++.....
T Consensus 260 HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~ 336 (459)
T KOG0288|consen 260 HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTR 336 (459)
T ss_pred cccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccceEEEeccCCceee
Confidence 999999999998777799999999999999999888876642 3345556554 5578889999999999999877666
Q ss_pred eecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--eeeee----cCCceeEEEEcCCCCEEEEEecCCeEEEEe
Q 009569 396 WKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIE----EEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (532)
Q Consensus 396 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~----~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd 469 (532)
....++ .|+++..++++..+++++.|.++.++|+++.. ..+.. .....+.+.|||++.|+++|+.||.|+||+
T Consensus 337 sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~ 415 (459)
T KOG0288|consen 337 SVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWS 415 (459)
T ss_pred EeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEE
Confidence 666555 89999999999999999999999999999987 22221 234488999999999999999999999999
Q ss_pred cCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEe
Q 009569 470 IESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFL 515 (532)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~ 515 (532)
+.++ ++...+........+..+.| +|.|..+++++.++.+.+|.
T Consensus 416 v~tg-KlE~~l~~s~s~~aI~s~~W-~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 416 VFTG-KLEKVLSLSTSNAAITSLSW-NPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ccCc-eEEEEeccCCCCcceEEEEE-cCCCchhhcccCCcceEecC
Confidence 9998 78777776655533455666 89999999999999999993
No 77
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.4e-26 Score=215.74 Aligned_cols=253 Identities=17% Similarity=0.229 Sum_probs=210.9
Q ss_pred eEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEE--------------EEe-ecCCCCeEEEEeCCCC
Q 009569 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLK--------------HRL-SGHRKPVFTVSWSPND 329 (532)
Q Consensus 265 ~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~--------------~~~-~~h~~~v~~l~~s~~~ 329 (532)
+..+..|.-+|+||+++|++++.++++.|++|.-|++.++...+.+ ..- .+|...+.+++.|+||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 4566779999999999999999999999999999999876532111 111 3788999999999999
Q ss_pred CEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEE
Q 009569 330 HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAI 409 (532)
Q Consensus 330 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 409 (532)
+||++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....+++++.|++|++|+++..........|...|.++..
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida 294 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA 294 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence 99999999999999999999999999999999999999998899999999999999999876554444455558999988
Q ss_pred eeCCCEEEEEECCCeEEEEECCCCc-eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEec-cc---
Q 009569 410 TDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG-HK--- 484 (532)
Q Consensus 410 s~~~~~l~~~~~dg~I~iwd~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~--- 484 (532)
..-++.+-+|+.|+++++|++.... ..+.++.+.+-|++|-. ...+++|+.+|.|.+|++... +++.+... |.
T Consensus 295 L~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KK-kplf~~~~AHgv~~ 372 (479)
T KOG0299|consen 295 LSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKK-KPLFTSRLAHGVIP 372 (479)
T ss_pred hcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeeccc-CceeEeeccccccC
Confidence 8888878888899999999996655 77778888999999984 567899999999999999887 67766542 21
Q ss_pred ------cceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCC
Q 009569 485 ------RARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPF 520 (532)
Q Consensus 485 ------~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~ 520 (532)
.+.++..++. -|...++++|+.+|+|++|.+.++.
T Consensus 373 ~~~~~~~~~Witsla~-i~~sdL~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 373 ELDPVNGNFWITSLAV-IPGSDLLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred CccccccccceeeeEe-cccCceEEecCCCCceEEEEecCCc
Confidence 1113333444 6788999999999999999999984
No 78
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1.3e-26 Score=219.92 Aligned_cols=273 Identities=21% Similarity=0.281 Sum_probs=207.8
Q ss_pred cccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCe---------e
Q 009569 237 CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ---------V 307 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~---------~ 307 (532)
.+++++.|..+.+|+-..........+.++-- ....|.+++|++.|..|++.+....++|+|-..-.. +
T Consensus 181 R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~--E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI 258 (641)
T KOG0772|consen 181 RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPC--ETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYI 258 (641)
T ss_pred eeeeccccceEEEEecccccccchhhhccCcc--cccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhh
Confidence 44577778888888765443322222222222 344789999999999988888888999999762211 1
Q ss_pred EEEEEeecCCCCeEEEEeCCCC-CEEEEeeCCCcEEEEECCCCc-EEEEee-----ccCCceEEEEEeeCCCeEEEEeCC
Q 009569 308 SLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSGE-CLHVYE-----KTGVGLISCGWFLDGGGIFAGMTD 380 (532)
Q Consensus 308 ~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~-~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~d 380 (532)
.-...-++|...++|.+|+|+. ..++||+.||+++|||+...+ ....++ +..-++++|+|+++++.|++|+.|
T Consensus 259 ~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~D 338 (641)
T KOG0772|consen 259 RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLD 338 (641)
T ss_pred hhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccC
Confidence 1223457899999999999965 589999999999999996543 344443 234568999999999999999999
Q ss_pred CcEEEEECCCC---eEEEeecCccC--ceEEEEEeeCCCEEEEEECCCeEEEEECCCCcee---e--eecCCceeEEEEc
Q 009569 381 KSICLWDLDGR---ELESWKGQKTL--RISDMAITDDGKRIISICREAAILLLDREANFER---W--IEEEEVITSFSLS 450 (532)
Q Consensus 381 g~i~iwd~~~~---~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~~~---~--~~~~~~i~~~~~s 450 (532)
|.|.+|+..+. ....+...|.. .|++++||+||++|++-+.|+++++||++..+.. . +....+-+.++||
T Consensus 339 GSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FS 418 (641)
T KOG0772|consen 339 GSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFS 418 (641)
T ss_pred CceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccC
Confidence 99999998653 33444455544 8999999999999999999999999999987722 2 2334567889999
Q ss_pred CCCCEEEEEec------CCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEe
Q 009569 451 KDNKYLLVNLI------NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFL 515 (532)
Q Consensus 451 p~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~ 515 (532)
|+.++|++|+. .|.+.+||..+. ..+.++.-.. ..++++.| +|.-+.|+.|+.||.+++|-
T Consensus 419 Pd~kli~TGtS~~~~~~~g~L~f~d~~t~-d~v~ki~i~~--aSvv~~~W-hpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 419 PDDKLILTGTSAPNGMTAGTLFFFDRMTL-DTVYKIDIST--ASVVRCLW-HPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CCceEEEecccccCCCCCceEEEEeccce-eeEEEecCCC--ceEEEEee-cchhhheeeecCCCceEEEE
Confidence 99999999864 568999998887 7777766553 34677777 99999999999999999874
No 79
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=5e-26 Score=211.81 Aligned_cols=247 Identities=14% Similarity=0.207 Sum_probs=215.6
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEE
Q 009569 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL 352 (532)
Q Consensus 273 ~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 352 (532)
..++++...|....++||+.|.++.++|..++ ..+..+.||...|+.+.++|+...+++++.|..|+||......+.
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~---q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSN---QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchh---hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence 46788888888788999999999999999876 567889999999999999999999999999999999999888888
Q ss_pred EEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCc--cCceEEEEEeeCCCEEEEEECCCeEEEEEC
Q 009569 353 HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK--TLRISDMAITDDGKRIISICREAAILLLDR 430 (532)
Q Consensus 353 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~ 430 (532)
.....|..+|+.+..+|.|.+|++++.|++..+.|++++......... .-.+++.+|+|||..+.+|+.|+.|+|||+
T Consensus 297 ~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence 888999999999999999999999999999999999876554444332 236899999999999999999999999999
Q ss_pred CCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCC
Q 009569 431 EANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED 508 (532)
Q Consensus 431 ~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~d 508 (532)
.+.. ..+.+|.++|..++|+.+|-||++++.|+.|++||++.. +..+++...... .+...+| .+.|.+|+.++.|
T Consensus 377 ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl-~n~kt~~l~~~~-~v~s~~f-D~SGt~L~~~g~~ 453 (506)
T KOG0289|consen 377 KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL-KNFKTIQLDEKK-EVNSLSF-DQSGTYLGIAGSD 453 (506)
T ss_pred CCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh-cccceeeccccc-cceeEEE-cCCCCeEEeecce
Confidence 9887 778899999999999999999999999999999999988 777777755442 2355677 8999999999999
Q ss_pred CcEEEEeCCCCCceeee
Q 009569 509 SQVNIFLSFSPFAKKIK 525 (532)
Q Consensus 509 g~i~iw~~~~~~~~~~~ 525 (532)
=+|++++-.+.....+.
T Consensus 454 l~Vy~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 454 LQVYICKKKTKSWTEIK 470 (506)
T ss_pred eEEEEEecccccceeee
Confidence 99999986665554443
No 80
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=6.5e-25 Score=187.85 Aligned_cols=254 Identities=17% Similarity=0.245 Sum_probs=206.4
Q ss_pred CCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecC--CeeEEEEEeecCCCCeEEEEeCCC----CCEEE
Q 009569 260 IPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED--GQVSLKHRLSGHRKPVFTVSWSPN----DHQLL 333 (532)
Q Consensus 260 ~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~--~~~~~~~~~~~h~~~v~~l~~s~~----~~~l~ 333 (532)
.|....+.-+.|.+.|+|.+|||+|++||+|+.|.+|++...+.. +....-..+.-|.+.|..++|-.+ +..|+
T Consensus 77 pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~ 156 (350)
T KOG0641|consen 77 PPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILA 156 (350)
T ss_pred CCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEE
Confidence 334445556779999999999999999999999999999876532 112233557789999999999653 45777
Q ss_pred EeeC-CCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeec-------CccCceE
Q 009569 334 TCGQ-EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG-------QKTLRIS 405 (532)
Q Consensus 334 s~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~ 405 (532)
+++. |..|++-|..+|+..+.+.+|.+.|.++ ++-++-.+++|+.|.+|++||++-........ .....|.
T Consensus 157 s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessava 235 (350)
T KOG0641|consen 157 SAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVA 235 (350)
T ss_pred ecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeE
Confidence 7654 7789999999999999999999999877 34478899999999999999998544333221 1234799
Q ss_pred EEEEeeCCCEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCC---CcceeEE
Q 009569 406 DMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD---PKLVSRY 480 (532)
Q Consensus 406 ~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~ 480 (532)
++++.|.|+++++|-.|....+||++.+. ..+..|...|.|+.|+|...|+++++.|..|++-|+... .-++...
T Consensus 236 av~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv 315 (350)
T KOG0641|consen 236 AVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVV 315 (350)
T ss_pred EEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEE
Confidence 99999999999999999999999999998 788899999999999999999999999999999999754 1233444
Q ss_pred eccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCC
Q 009569 481 KGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSF 517 (532)
Q Consensus 481 ~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~ 517 (532)
..|... .|.+.| +|..--+++.+.|.++.+|.++
T Consensus 316 ~ehkdk--~i~~rw-h~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 316 AEHKDK--AIQCRW-HPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EeccCc--eEEEEe-cCccceeeeccCcceEEEeccC
Confidence 556665 566777 8888888899999999999764
No 81
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.1e-26 Score=217.65 Aligned_cols=259 Identities=16% Similarity=0.249 Sum_probs=209.5
Q ss_pred CCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEE
Q 009569 244 DSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTV 323 (532)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l 323 (532)
...+.+|+..++ .....+....+.|.++.|-.||++||.|...|.|+|||..+. ..+..+.+|+.+|..+
T Consensus 47 S~rvqly~~~~~-------~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r---~iLR~~~ah~apv~~~ 116 (487)
T KOG0310|consen 47 SVRVQLYSSVTR-------SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR---VILRQLYAHQAPVHVT 116 (487)
T ss_pred ccEEEEEecchh-------hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH---HHHHHHhhccCceeEE
Confidence 334556654443 233445557789999999999999999999999999996532 2457788999999999
Q ss_pred EeCCC-CCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeC-CCeEEEEeCCCcEEEEECCCCeEEEeecCcc
Q 009569 324 SWSPN-DHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRELESWKGQKT 401 (532)
Q Consensus 324 ~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 401 (532)
.|+|. +..+++|+.|+.+++||+.+......+.+|+..|.|.+|+|. +..+++|+.||.|++||++........-.|.
T Consensus 117 ~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg 196 (487)
T KOG0310|consen 117 KFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHG 196 (487)
T ss_pred EecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCC
Confidence 99995 467788888999999999998876688899999999999995 4578899999999999998753333444455
Q ss_pred CceEEEEEeeCCCEEEEEECCCeEEEEECCCCc---eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCccee
Q 009569 402 LRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVS 478 (532)
Q Consensus 402 ~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~ 478 (532)
.+|..+.+-|.|..|++++. ..|++||+.++. .....|...|||+++..++..|++++-|+.+++||+.+. +.+.
T Consensus 197 ~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~-Kvv~ 274 (487)
T KOG0310|consen 197 CPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY-KVVH 274 (487)
T ss_pred CceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce-EEEE
Confidence 59999999999999998765 589999999665 334459999999999999999999999999999997776 7887
Q ss_pred EEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 479 RYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 479 ~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
.+.-.. + ++.+.. +|++..++.|-.||.+.+=+...
T Consensus 275 s~~~~~-p--vLsiav-s~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 275 SWKYPG-P--VLSIAV-SPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred eeeccc-c--eeeEEe-cCCCceEEEecccceeeeehhhc
Confidence 776443 3 344444 89999999999999988775544
No 82
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.4e-26 Score=204.16 Aligned_cols=270 Identities=16% Similarity=0.302 Sum_probs=226.1
Q ss_pred CCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEE
Q 009569 245 SDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVS 324 (532)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~ 324 (532)
..++.|.+.+ ...+.++.+.||.+.||.++-......+.+++.|.+.+||.++++ .++..+.+|.+.|+++.
T Consensus 126 rivssFk~~t-----~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg---~CL~~Y~GH~GSVNsik 197 (481)
T KOG0300|consen 126 RIVSSFKDGT-----VKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG---ACLATYTGHTGSVNSIK 197 (481)
T ss_pred hheeeecCCc-----eeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccc---cceeeecccccceeeEE
Confidence 3455555544 124567789999999999999888889999999999999999988 67789999999999999
Q ss_pred eCCCCCEEEEeeCCCcEEEEEC------CC------------------------------C----cEEEEeeccCCceEE
Q 009569 325 WSPNDHQLLTCGQEEAIRRWDV------NS------------------------------G----ECLHVYEKTGVGLIS 364 (532)
Q Consensus 325 ~s~~~~~l~s~~~dg~i~iwd~------~~------------------------------~----~~~~~~~~~~~~i~~ 364 (532)
|++.+.++++++.|++-.||.. .. + .++..+.+|.+.|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 9999999999999999999962 10 0 134467789999999
Q ss_pred EEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc---eeeeecC
Q 009569 365 CGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEE 441 (532)
Q Consensus 365 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~---~~~~~~~ 441 (532)
+.|...|+.+++++.|.+..+||++++++.....+|....+.++-+|..+++++++.|.+.++||++... ..+.+|.
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt 357 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT 357 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccc
Confidence 9999999999999999999999999999999888888899999999999999999999999999999654 6678999
Q ss_pred CceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCCc
Q 009569 442 EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPFA 521 (532)
Q Consensus 442 ~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~~ 521 (532)
..|+++.|..+. .+++|+.|.+|++||+++...++.+++.... +..+.+ +..+..|+.--.+..|++||++...+
T Consensus 358 dtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~-~NRvav---s~g~~iIAiPhDNRqvRlfDlnG~Rl 432 (481)
T KOG0300|consen 358 DTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSP-ANRVAV---SKGHPIIAIPHDNRQVRLFDLNGNRL 432 (481)
T ss_pred cceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCc-cceeEe---ecCCceEEeccCCceEEEEecCCCcc
Confidence 999999999765 5889999999999999998788888875543 233333 44556788777788899999998766
Q ss_pred eeeecc
Q 009569 522 KKIKYT 527 (532)
Q Consensus 522 ~~~~~~ 527 (532)
.++..+
T Consensus 433 aRlPrt 438 (481)
T KOG0300|consen 433 ARLPRT 438 (481)
T ss_pred ccCCcc
Confidence 655443
No 83
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.3e-26 Score=215.56 Aligned_cols=241 Identities=15% Similarity=0.199 Sum_probs=201.5
Q ss_pred ccccEEEEEEccCCCE-EEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCC
Q 009569 271 HSDEVWFLQFSHDGKY-LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (532)
Q Consensus 271 h~~~V~~v~~s~~g~~-las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 349 (532)
..+.|.+++|+|...+ +|+++ .-.+.||+..+- ...+++.-....|.+++|-.||++|++|...|.|+|+|+.+.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~---~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTR---SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchh---hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH
Confidence 3468999999995543 44443 347899998754 234555567788999999999999999999999999998777
Q ss_pred cEEEEeeccCCceEEEEEeeC-CCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCC-CEEEEEECCCeEEE
Q 009569 350 ECLHVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDG-KRIISICREAAILL 427 (532)
Q Consensus 350 ~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~I~i 427 (532)
..++.+..|..++..+.|+|+ +..+++|+.|+.+++||+.+..+......|...|.+.+|+|-. ..+++|+.||.|++
T Consensus 101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl 180 (487)
T KOG0310|consen 101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRL 180 (487)
T ss_pred HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEE
Confidence 778889999999999999995 5567778889999999999988765667777899999999954 48899999999999
Q ss_pred EECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEE
Q 009569 428 LDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG 505 (532)
Q Consensus 428 wd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sg 505 (532)
||++... .....|..+|.++.+-|.|..+++++ .+.|++||+.++.+.+..+..|...++++ ++ ..++..|++|
T Consensus 181 ~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL--~l-~s~~~rLlS~ 256 (487)
T KOG0310|consen 181 WDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCL--RL-ASDSTRLLSG 256 (487)
T ss_pred EEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEE--Ee-ecCCceEeec
Confidence 9999874 66678999999999999999999988 56899999997768888887788886664 44 5588999999
Q ss_pred eCCCcEEEEeCCCC
Q 009569 506 SEDSQVNIFLSFSP 519 (532)
Q Consensus 506 s~dg~i~iw~~~~~ 519 (532)
+-|+.|++||+.+-
T Consensus 257 sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 257 SLDRHVKVFDTTNY 270 (487)
T ss_pred ccccceEEEEccce
Confidence 99999999996653
No 84
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.7e-25 Score=198.14 Aligned_cols=246 Identities=18% Similarity=0.281 Sum_probs=196.0
Q ss_pred cccccccEEEEEEcc-CCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEEC
Q 009569 268 LEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (532)
Q Consensus 268 l~~h~~~V~~v~~s~-~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 346 (532)
-..-.+.|.+++||| ...+++.+|.|++|++|+++..+.+.. +....|.++|.+++|+.||..+++|+.|+.+++||+
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDL 101 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEc
Confidence 344668899999999 556677899999999999997555433 556679999999999999999999999999999999
Q ss_pred CCCcEEEEeeccCCceEEEEEeeCCC--eEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCe
Q 009569 347 NSGECLHVYEKTGVGLISCGWFLDGG--GIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAA 424 (532)
Q Consensus 347 ~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 424 (532)
.+++ +..+..|.++|.++.|.+... .|++|+.|++|+.||++............ +++++..- ...++++..+..
T Consensus 102 ~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv~--~pm~vVata~r~ 177 (347)
T KOG0647|consen 102 ASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADVL--YPMAVVATAERH 177 (347)
T ss_pred cCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhcc--CceeEEEecCCc
Confidence 9994 567778999999999998665 79999999999999998654433333332 67776654 347888999999
Q ss_pred EEEEECCCCceeee----ecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCC-CcceeEEecccc------ceEEEEEc
Q 009569 425 ILLLDREANFERWI----EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD-PKLVSRYKGHKR------ARFVIRSC 493 (532)
Q Consensus 425 I~iwd~~~~~~~~~----~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~------~~~~i~~~ 493 (532)
|.+|++++....+. ...-.+.|++..+|....+.|+-+|.+.|..+..+ .+.-.+|+.|.. .+|.+...
T Consensus 178 i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi 257 (347)
T KOG0647|consen 178 IAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSI 257 (347)
T ss_pred EEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecce
Confidence 99999988763222 34456889999999988899999999999988764 233446677753 25555443
Q ss_pred cCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 494 FGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 494 ~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
.++|.-..|+|+|.||++.+||-+.
T Consensus 258 ~FhP~hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 258 AFHPVHGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred EeecccceEEEecCCceEEEecchh
Confidence 3499999999999999999999765
No 85
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.4e-26 Score=225.54 Aligned_cols=242 Identities=18% Similarity=0.305 Sum_probs=208.9
Q ss_pred EEEEcc-CCCEEEEEeCCCeEEEEEeecCCe---eEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCC--c
Q 009569 277 FLQFSH-DGKYLASSSKDQSAIIWEVKEDGQ---VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG--E 350 (532)
Q Consensus 277 ~v~~s~-~g~~las~s~dg~i~iwd~~~~~~---~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--~ 350 (532)
.+..+. .++||+|||.||.|++|++..... -.....+..|...|+.+....+++.|++||.|-+|++|+...+ -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 444444 677899999999999999875432 1245677889999999999999999999999999999999877 5
Q ss_pred EEEEeeccCCceEEEEE-eeCCCeEEEEeCCCcEEEEECCCCeE-----------EEeecCccCceEEEEEeeCCCEEEE
Q 009569 351 CLHVYEKTGVGLISCGW-FLDGGGIFAGMTDKSICLWDLDGREL-----------ESWKGQKTLRISDMAITDDGKRIIS 418 (532)
Q Consensus 351 ~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~-----------~~~~~~~~~~v~~~~~s~~~~~l~~ 418 (532)
|..++..|...|.|+++ .++...+++|+-|+.|.+||++++.. .....++...|++++.++.|..|++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 78889999999999999 77888999999999999999985421 1112144458999999999999999
Q ss_pred EECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCC
Q 009569 419 ICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGG 496 (532)
Q Consensus 419 ~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s 496 (532)
|+..+.+++||.++.. ..+.+|...|..+..++||..++++++||+|++||+... +++.++..|...++.+.+ +
T Consensus 189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~e~VWaL~~---~ 264 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ-RCLATYIVHKEGVWALQS---S 264 (735)
T ss_pred cCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc-ceeeeEEeccCceEEEee---C
Confidence 9999999999999988 777899999999999999999999999999999999988 999999999999777655 6
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCce
Q 009569 497 FEQAFIASGSEDSQVNIFLSFSPFAK 522 (532)
Q Consensus 497 ~d~~~l~sgs~dg~i~iw~~~~~~~~ 522 (532)
|+=..+++|+.||.|+.=|+.+....
T Consensus 265 ~sf~~vYsG~rd~~i~~Tdl~n~~~~ 290 (735)
T KOG0308|consen 265 PSFTHVYSGGRDGNIYRTDLRNPAKS 290 (735)
T ss_pred CCcceEEecCCCCcEEecccCCchhh
Confidence 78899999999999999999885433
No 86
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=5.5e-27 Score=213.56 Aligned_cols=247 Identities=15% Similarity=0.246 Sum_probs=194.1
Q ss_pred ceeEEcccccccEEEEEEccCC-CEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcE
Q 009569 263 QTLQILEAHSDEVWFLQFSHDG-KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (532)
Q Consensus 263 ~~~~~l~~h~~~V~~v~~s~~g-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 341 (532)
..+..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+..- .+..++..|.+.|..+++.. ..+++++.|.+|
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR---~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtv 131 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR---ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTV 131 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh---hhhheeecccCceeeEEecc--cceEEecCCcce
Confidence 4456678999999999999977 78999999999999999854 46788999999999999976 678899999988
Q ss_pred EEEECCC---------------------------C-----------cEEEEeeccCCceEEEEEeeC-CCeEEEEeCCCc
Q 009569 342 RRWDVNS---------------------------G-----------ECLHVYEKTGVGLISCGWFLD-GGGIFAGMTDKS 382 (532)
Q Consensus 342 ~iwd~~~---------------------------~-----------~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~ 382 (532)
+.|-+.. | .++..+.-....|.++.|+|- ...|++|..|+.
T Consensus 132 K~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 132 KQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred eeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence 8887421 1 122333334456788888884 455667779999
Q ss_pred EEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc---eeeeecCCceeEEEEcCCCCEEEEE
Q 009569 383 ICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVN 459 (532)
Q Consensus 383 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~ 459 (532)
|.+||++............ .-+.|+|+|.+-.+++++.|..++.||++... ....+|...|.++.|||.|+-+++|
T Consensus 212 IvLyD~R~~~Pl~KVi~~m-RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsg 290 (433)
T KOG0268|consen 212 IVLYDLRQASPLKKVILTM-RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSG 290 (433)
T ss_pred eEEEecccCCccceeeeec-cccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccc
Confidence 9999998654433222222 57889999988889999999999999998876 5667889999999999999999999
Q ss_pred ecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 460 LINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 460 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
+.|.+|+||.+..+ ..-..+.. ..-..++++.| +.|.+||++||.|+.|++|....
T Consensus 291 syDksIRIf~~~~~-~SRdiYht-kRMq~V~~Vk~-S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 291 SYDKSIRIFPVNHG-HSRDIYHT-KRMQHVFCVKY-SMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred cccceEEEeecCCC-cchhhhhH-hhhheeeEEEE-eccccEEEecCCCcceeeeecch
Confidence 99999999999876 32222211 11122455666 99999999999999999998765
No 87
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.5e-24 Score=192.15 Aligned_cols=266 Identities=21% Similarity=0.337 Sum_probs=211.7
Q ss_pred cccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeC--CCeEEEEEeecCCeeEEEEEee
Q 009569 237 CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSK--DQSAIIWEVKEDGQVSLKHRLS 314 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~--dg~i~iwd~~~~~~~~~~~~~~ 314 (532)
++.+.+.+..+.+|+-.. .+.+.++..+.-.|..++|....+.++.++. |.+|+.-++.++ +.++.+.
T Consensus 28 ~litss~dDsl~LYd~~~-------g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN---kylRYF~ 97 (311)
T KOG1446|consen 28 LLITSSEDDSLRLYDSLS-------GKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN---KYLRYFP 97 (311)
T ss_pred EEEEecCCCeEEEEEcCC-------CceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC---ceEEEcC
Confidence 334445666777776443 5778888888889999999998888877776 889999999976 6779999
Q ss_pred cCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCC---C
Q 009569 315 GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG---R 391 (532)
Q Consensus 315 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~ 391 (532)
||...|.+++.+|-+..+++++.|++|++||++..+|...+.....+ .++|.|.|-.+|++.....|++||++. +
T Consensus 98 GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkg 175 (311)
T KOG1446|consen 98 GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSELIKLYDLRSFDKG 175 (311)
T ss_pred CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCCeEEEEEecccCCC
Confidence 99999999999999999999999999999999998888777655444 478999999999998888999999984 3
Q ss_pred eEEEeec--CccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--eeeeecCC---ceeEEEEcCCCCEEEEEecCCe
Q 009569 392 ELESWKG--QKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEE---VITSFSLSKDNKYLLVNLINQE 464 (532)
Q Consensus 392 ~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~---~i~~~~~sp~~~~l~~~~~dg~ 464 (532)
+...+.. ......+.+.|+|||++|+.++..+.+++.|.-++. ..+..+.. -..+.+|+||++++++|+.||+
T Consensus 176 PF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~ 255 (311)
T KOG1446|consen 176 PFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGT 255 (311)
T ss_pred CceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCc
Confidence 3333322 233478999999999999999999999999998877 33333322 2257889999999999999999
Q ss_pred EEEEecCCCCcceeEEec-cccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCC
Q 009569 465 IHLWSIESDPKLVSRYKG-HKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPF 520 (532)
Q Consensus 465 i~iwd~~~~~~~~~~~~~-~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~ 520 (532)
|.+|+++++ ..+..+.+ +..++.+++ | +|.-..++ +.+..+.+|-.....
T Consensus 256 i~vw~~~tg-~~v~~~~~~~~~~~~~~~--f-nP~~~mf~--sa~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 256 IHVWNLETG-KKVAVLRGPNGGPVSCVR--F-NPRYAMFV--SASSNLVFWLPDEDA 306 (311)
T ss_pred EEEEEcCCC-cEeeEecCCCCCCccccc--c-CCceeeee--ecCceEEEEeccccc
Confidence 999999998 88888888 455544433 5 77555554 456789999776543
No 88
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=1.8e-25 Score=221.01 Aligned_cols=243 Identities=15% Similarity=0.229 Sum_probs=211.4
Q ss_pred EEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEE
Q 009569 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (532)
Q Consensus 266 ~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 345 (532)
..+.||...|.++++|.+...+++|+ .+.+++|+..+. +++.++.. +.+.+..|-|.++++++|...|.+.+||
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~---kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTL---KCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCc---ceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEE
Confidence 35679999999999999998888875 568999999876 55666654 3789999999999999999999999999
Q ss_pred CCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCC-----C---eEEEeec----CccCceEEEEEeeCC
Q 009569 346 VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-----R---ELESWKG----QKTLRISDMAITDDG 413 (532)
Q Consensus 346 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~---~~~~~~~----~~~~~v~~~~~s~~~ 413 (532)
+.+...+.+++.|.+.|++++.+||+..+++|+.|.+|++||..- + ....... .-...|.|+.+||||
T Consensus 441 laS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg 520 (888)
T KOG0306|consen 441 LASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG 520 (888)
T ss_pred eehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC
Confidence 999999999999999999999999999999999999999999841 1 1111110 112379999999999
Q ss_pred CEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEE
Q 009569 414 KRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIR 491 (532)
Q Consensus 414 ~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 491 (532)
++++++--|.+|++|-+++.+ ..+.+|.-||.||.+|||++.+++|+.|.+|++|-+.-+ .+-+.+.+|...+ ..
T Consensus 521 k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG-DCHKS~fAHdDSv--m~ 597 (888)
T KOG0306|consen 521 KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG-DCHKSFFAHDDSV--MS 597 (888)
T ss_pred cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc-hhhhhhhcccCce--eE
Confidence 999999999999999999988 788999999999999999999999999999999999888 8899999999984 44
Q ss_pred EccCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 492 SCFGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 492 ~~~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
+.| -|...++.++|.|+.|+-||-..
T Consensus 598 V~F-~P~~~~FFt~gKD~kvKqWDg~k 623 (888)
T KOG0306|consen 598 VQF-LPKTHLFFTCGKDGKVKQWDGEK 623 (888)
T ss_pred EEE-cccceeEEEecCcceEEeechhh
Confidence 566 77889999999999999998765
No 89
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=3.2e-25 Score=225.89 Aligned_cols=243 Identities=16% Similarity=0.305 Sum_probs=211.7
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCc
Q 009569 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (532)
Q Consensus 271 h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 350 (532)
|...+.+..|. +.++++++.|++|++|+..++ ......+.+|.+.|.++++..-+.++++|+.|.++++||..+|+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~--~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~ 282 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG--YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE 282 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccc--eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc
Confidence 56788898887 668999999999999999865 22334499999999999998778899999999999999999999
Q ss_pred EEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEEC
Q 009569 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDR 430 (532)
Q Consensus 351 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~ 430 (532)
|..++.+|...+.++.. ....+++|+.|.+|++|+++++........|...|.++..+ +.++++|+.|++|++||.
T Consensus 283 C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~ 358 (537)
T KOG0274|consen 283 CTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDP 358 (537)
T ss_pred EEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEh
Confidence 99999999999988876 45678889999999999999888877777677799999998 779999999999999999
Q ss_pred CCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCC
Q 009569 431 EANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED 508 (532)
Q Consensus 431 ~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~d 508 (532)
.+.+ ..+.+|...|.++.+.+. ..+++|+.|+.|++||+.+..+++.++.+|...+..+ ...+++|++++.|
T Consensus 359 ~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l-----~~~~~~Lvs~~aD 432 (537)
T KOG0274|consen 359 RTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL-----LLRDNFLVSSSAD 432 (537)
T ss_pred hhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccc-----ccccceeEecccc
Confidence 9888 778899999999988765 8999999999999999988657899999998865332 3457899999999
Q ss_pred CcEEEEeCCCCCceeeecc
Q 009569 509 SQVNIFLSFSPFAKKIKYT 527 (532)
Q Consensus 509 g~i~iw~~~~~~~~~~~~~ 527 (532)
|.|++||..++...+....
T Consensus 433 ~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 433 GTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred ccEEEeecccCceeeeecc
Confidence 9999999999876665544
No 90
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=3.5e-25 Score=194.15 Aligned_cols=229 Identities=22% Similarity=0.291 Sum_probs=191.4
Q ss_pred ccccccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEe
Q 009569 234 RDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRL 313 (532)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~ 313 (532)
....+|+.+.|....+|-.. .++.+-++.||++.|||++.+.+.++++||+.|.++++||+++++. +..+
T Consensus 21 eGDLlFscaKD~~~~vw~s~-------nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~---la~~ 90 (327)
T KOG0643|consen 21 EGDLLFSCAKDSTPTVWYSL-------NGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ---LATW 90 (327)
T ss_pred CCcEEEEecCCCCceEEEec-------CCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE---EEEe
Confidence 33456677777777777543 4788999999999999999999999999999999999999998844 3444
Q ss_pred ecCCCCeEEEEeCCCCCEEEEeeC-----CCcEEEEECC-------CCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCC
Q 009569 314 SGHRKPVFTVSWSPNDHQLLTCGQ-----EEAIRRWDVN-------SGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDK 381 (532)
Q Consensus 314 ~~h~~~v~~l~~s~~~~~l~s~~~-----dg~i~iwd~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 381 (532)
. ...+|..+.|+++|++++.+.. .+.|.++|++ ..++...+..+...++.+.|.|-+..|++|..||
T Consensus 91 k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G 169 (327)
T KOG0643|consen 91 K-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDG 169 (327)
T ss_pred e-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCC
Confidence 3 4678999999999998888754 3679999997 4556778888889999999999999999999999
Q ss_pred cEEEEECCCC-eEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--e-----------------------
Q 009569 382 SICLWDLDGR-ELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--E----------------------- 435 (532)
Q Consensus 382 ~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~----------------------- 435 (532)
.|.+||.+++ ++......|...|+++.++||..++++++.|.+-++||..+.. .
T Consensus 170 ~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~Vilg 249 (327)
T KOG0643|consen 170 SISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILG 249 (327)
T ss_pred cEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEec
Confidence 9999999875 5555556666799999999999999999999999999987643 0
Q ss_pred --------------------------------eeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 009569 436 --------------------------------RWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (532)
Q Consensus 436 --------------------------------~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~ 473 (532)
...+|-++|++++|+|+|+..++|++||.|++......
T Consensus 250 GGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 250 GGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred CCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 01237789999999999999999999999999876543
No 91
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=2.9e-25 Score=208.54 Aligned_cols=246 Identities=16% Similarity=0.239 Sum_probs=200.2
Q ss_pred cccccEEEEEEcc-CCCEEEEEeCCCeEEEEEeecCCee-------EEEEEeecCCCCeEEEEeCCCC-CEEEEeeCCCc
Q 009569 270 AHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQV-------SLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEA 340 (532)
Q Consensus 270 ~h~~~V~~v~~s~-~g~~las~s~dg~i~iwd~~~~~~~-------~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~ 340 (532)
.|.++|+.+..-| +..++|+++..+.|.|||..+.... .+-..+.+|.+.-.+++|++.. -.|++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 4999999999999 5567788899999999998753322 2334788999988899999954 48999999999
Q ss_pred EEEEECCCCc-------EEEEeeccCCceEEEEEee-CCCeEEEEeCCCcEEEEECC--CCeEEEeecCccCceEEEEEe
Q 009569 341 IRRWDVNSGE-------CLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLD--GRELESWKGQKTLRISDMAIT 410 (532)
Q Consensus 341 i~iwd~~~~~-------~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s 410 (532)
|++||+.... ....+.+|...|..++|++ +...|.+++.|+.+.|||++ +.+.......|...|.|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 9999996432 3467889999999999999 66778889999999999999 455555566777799999999
Q ss_pred e-CCCEEEEEECCCeEEEEECCCCc---eeeeecCCceeEEEEcCCC-CEEEEEecCCeEEEEecCCCC-----------
Q 009569 411 D-DGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDN-KYLLVNLINQEIHLWSIESDP----------- 474 (532)
Q Consensus 411 ~-~~~~l~~~~~dg~I~iwd~~~~~---~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~i~iwd~~~~~----------- 474 (532)
| ++..||+|+.|++|.+||+++.. ..+.+|...|.++.|||+. ..|++++.|+.+.+||+..-+
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dg 361 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDG 361 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccC
Confidence 9 45678899999999999999977 7778999999999999965 678888999999999996432
Q ss_pred --cceeEEeccccceEEEEEccCCCCCc-EEEEEeCCCcEEEEeCCC
Q 009569 475 --KLVSRYKGHKRARFVIRSCFGGFEQA-FIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 475 --~~~~~~~~~~~~~~~i~~~~~s~d~~-~l~sgs~dg~i~iw~~~~ 518 (532)
+++..-.||... +..+.| +|+.. .|+|+++|+.+.||+...
T Consensus 362 ppEllF~HgGH~~k--V~DfsW-np~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 362 PPELLFIHGGHTAK--VSDFSW-NPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CcceeEEecCcccc--cccccC-CCCCCeEEEEecCCceEEEeeccc
Confidence 233455677776 344666 66655 577889999999999874
No 92
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=3.7e-26 Score=198.37 Aligned_cols=249 Identities=21% Similarity=0.284 Sum_probs=214.3
Q ss_pred EEcccccccEEEEEEcc---CCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEE
Q 009569 266 QILEAHSDEVWFLQFSH---DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (532)
Q Consensus 266 ~~l~~h~~~V~~v~~s~---~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 342 (532)
.+..+|+.+|..++||| +|-+|++++.|+.-.+-+-+++ ..+-++.+|.+.|++...+.+....++++.|-+-+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg---dwigtfeghkgavw~~~l~~na~~aasaaadftak 84 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG---DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAK 84 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC---CcEEeeeccCcceeeeecCchhhhhhhhcccchhh
Confidence 45678999999999997 8889999999999888777665 56789999999999999999988999999999999
Q ss_pred EEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCe-EEEeecCccCceEEEEEeeCCCEEEEEEC
Q 009569 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE-LESWKGQKTLRISDMAITDDGKRIISICR 421 (532)
Q Consensus 343 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 421 (532)
+||.-+|..+..|. |..-|.+++|+.|.++|++|+.+..+++||++..+ .......+.+.|..+.|....+.|++++.
T Consensus 85 vw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSad 163 (334)
T KOG0278|consen 85 VWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSAD 163 (334)
T ss_pred hhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeecc
Confidence 99999999999986 77889999999999999999999999999997522 22233445568999999999999999999
Q ss_pred CCeEEEEECCCCc-eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCc
Q 009569 422 EAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA 500 (532)
Q Consensus 422 dg~I~iwd~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~ 500 (532)
|++|++||.+++. ...+....+|+++.++++|++|.++. .+.|.+||..+. .+++.+..... +..+-.+|+..
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf-~~lKs~k~P~n----V~SASL~P~k~ 237 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSF-GLLKSYKMPCN----VESASLHPKKE 237 (334)
T ss_pred CCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-CceeEEeccccc-cceeeccCccc----cccccccCCCc
Confidence 9999999999998 67778889999999999999887776 678999999988 78877775543 22333489999
Q ss_pred EEEEEeCCCcEEEEeCCCCCceee
Q 009569 501 FIASGSEDSQVNIFLSFSPFAKKI 524 (532)
Q Consensus 501 ~l~sgs~dg~i~iw~~~~~~~~~~ 524 (532)
++++|++|+.++.||..++.....
T Consensus 238 ~fVaGged~~~~kfDy~TgeEi~~ 261 (334)
T KOG0278|consen 238 FFVAGGEDFKVYKFDYNTGEEIGS 261 (334)
T ss_pred eEEecCcceEEEEEeccCCceeee
Confidence 999999999999999999875443
No 93
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=2.2e-25 Score=199.19 Aligned_cols=282 Identities=17% Similarity=0.260 Sum_probs=214.4
Q ss_pred hcccccc-cccCCCCCceeeccCCccC-----------CCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEE
Q 009569 232 VQRDSCL-FHNTSDSDFSLYSDHQCGR-----------NRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIW 299 (532)
Q Consensus 232 ~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iw 299 (532)
+..+..+ .+++.|..+.+++-..... .+.....+++|-.|.++|+++.|+|...+|++|+.|++|++|
T Consensus 120 fs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlF 199 (430)
T KOG0640|consen 120 FSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLF 199 (430)
T ss_pred eCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEE
Confidence 3333333 3566677777776542211 112235788899999999999999999999999999999999
Q ss_pred EeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEe---eccCCceEEEEEeeCCCeEEE
Q 009569 300 EVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY---EKTGVGLISCGWFLDGGGIFA 376 (532)
Q Consensus 300 d~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~ 376 (532)
|.......+..+.+ ....+|.++.|+|.|.+|+.|..-.++++||+.+-+|...- ..|.+.|+++.+++.++..++
T Consensus 200 DfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvT 278 (430)
T KOG0640|consen 200 DFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVT 278 (430)
T ss_pred ecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEE
Confidence 99743211111222 34568999999999999999999999999999999886544 367889999999999999999
Q ss_pred EeCCCcEEEEECC-CCeEEEeecCc-cCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--eeeeec-----CCceeEE
Q 009569 377 GMTDKSICLWDLD-GRELESWKGQK-TLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEE-----EEVITSF 447 (532)
Q Consensus 377 ~~~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~-----~~~i~~~ 447 (532)
|+.||.|++||-- ++.+..+...| ...|.+..|+.+|+++++.+.|..+++|.+.+++ ..+.+. ..--+..
T Consensus 279 aSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqA 358 (430)
T KOG0640|consen 279 ASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQA 358 (430)
T ss_pred eccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhh
Confidence 9999999999964 44444554444 3479999999999999999999999999999988 333322 1223455
Q ss_pred EEcCCCCEEEEEec-CCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCC
Q 009569 448 SLSKDNKYLLVNLI-NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSF 517 (532)
Q Consensus 448 ~~sp~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~ 517 (532)
.|+....|++.-.+ .+.+.-||.++..+.-..--+|.+. +++.-.+|.+.-+++|+.|-.+++|-.+
T Consensus 359 vFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a---~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 359 VFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGA---VRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhcCccceEEccccccCceeeccccchhhhhhcccCCCCC---ceEEEeCCCCCceeeecccceeeeeeec
Confidence 68878888887654 5679999999884443344577776 3344448999999999999999999755
No 94
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5e-25 Score=197.41 Aligned_cols=256 Identities=19% Similarity=0.283 Sum_probs=211.5
Q ss_pred cceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEe------ec------------------------------CC
Q 009569 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEV------KE------------------------------DG 305 (532)
Q Consensus 262 ~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~------~~------------------------------~~ 305 (532)
+.|+..+.||.+.|++++|++.+.++++++.|++..||.. .. +.
T Consensus 180 g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ 259 (481)
T KOG0300|consen 180 GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH 259 (481)
T ss_pred ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc
Confidence 6899999999999999999999999999999999999972 11 00
Q ss_pred e-eEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEE
Q 009569 306 Q-VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSIC 384 (532)
Q Consensus 306 ~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 384 (532)
. -.++..+.+|.+.|.+..|-..|+.+++++.|.+..+||+++|+.+..+.+|....+.++-+|..+++++++.|.+.+
T Consensus 260 tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFR 339 (481)
T KOG0300|consen 260 TIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFR 339 (481)
T ss_pred eeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeE
Confidence 1 134567889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCC-CeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEec
Q 009569 385 LWDLDG-RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLI 461 (532)
Q Consensus 385 iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~ 461 (532)
+||++. -.....+.+|...|+++.|..+. .+++|+.|.+|++||+++.. ...+....+++.++.+..+..|+.-..
T Consensus 340 LWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhD 418 (481)
T KOG0300|consen 340 LWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHD 418 (481)
T ss_pred eccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccC
Confidence 999984 22334455566699999998764 68999999999999999987 556677889999999999999999999
Q ss_pred CCeEEEEecCCCCccee----EEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCC
Q 009569 462 NQEIHLWSIESDPKLVS----RYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPF 520 (532)
Q Consensus 462 dg~i~iwd~~~~~~~~~----~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~ 520 (532)
+..|++||+... .+.+ .-++|..-+.+..+.--+|- .-|++++.|..+.-|+++...
T Consensus 419 NRqvRlfDlnG~-RlaRlPrtsRqgHrRMV~c~AW~eehp~-cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 419 NRQVRLFDLNGN-RLARLPRTSRQGHRRMVTCCAWLEEHPA-CNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred CceEEEEecCCC-ccccCCcccccccceeeeeeeccccCcc-cccccccccceeeeeEecccC
Confidence 999999999765 3222 23466665333222221232 347789999999999998754
No 95
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.4e-25 Score=215.85 Aligned_cols=278 Identities=20% Similarity=0.226 Sum_probs=223.7
Q ss_pred ccccccccCCCCCceeeccCCccCCCCCcc-eeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEE
Q 009569 234 RDSCLFHNTSDSDFSLYSDHQCGRNRIPSQ-TLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHR 312 (532)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~ 312 (532)
....+|+++.|+.+.+|....- ...|.. .+..++.|.+.|..+....+|+.|+++|.|-+|++|+...++ .-+..+
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d--~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~~c~st 112 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQD--SNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-TFCMST 112 (735)
T ss_pred CCceEEecCCCceEEEeccccc--cCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-chhHhh
Confidence 3446899999999999976543 222333 588899999999999999999999999999999999998765 346788
Q ss_pred eecCCCCeEEEEe-CCCCCEEEEeeCCCcEEEEECCCCc--EEEE--------ee-ccCCceEEEEEeeCCCeEEEEeCC
Q 009569 313 LSGHRKPVFTVSW-SPNDHQLLTCGQEEAIRRWDVNSGE--CLHV--------YE-KTGVGLISCGWFLDGGGIFAGMTD 380 (532)
Q Consensus 313 ~~~h~~~v~~l~~-s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~--------~~-~~~~~i~~~~~~~~~~~l~~~~~d 380 (532)
+..|...|.|++. .++...+|+||.|+.|.+||+.++. .+.. +. ++...|++++.++.|..|++|+..
T Consensus 113 ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte 192 (735)
T KOG0308|consen 113 IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE 192 (735)
T ss_pred hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc
Confidence 8999999999999 8889999999999999999999872 2222 22 667889999999999999999999
Q ss_pred CcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEE
Q 009569 381 KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLV 458 (532)
Q Consensus 381 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~ 458 (532)
+.+++||.+++....-..+|...|.++..++||..+++++.||+|++||+...+ .++..|...|.++..+|+-.++++
T Consensus 193 k~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYs 272 (735)
T KOG0308|consen 193 KDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYS 272 (735)
T ss_pred cceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEe
Confidence 999999998755443334666699999999999999999999999999998877 778889999999999999999999
Q ss_pred EecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 459 NLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 459 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
|+.||.|+.=|+++..+....++. ..++.- ... +.+.+-+.+++.|+.|+-|...-
T Consensus 273 G~rd~~i~~Tdl~n~~~~tlick~-daPv~~--l~~-~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 273 GGRDGNIYRTDLRNPAKSTLICKE-DAPVLK--LHL-HEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred cCCCCcEEecccCCchhheEeecC-CCchhh--hhh-ccccCCceeeeccccceecCCcc
Confidence 999999999999985333333322 222111 222 22223346677899999997653
No 96
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7e-23 Score=175.44 Aligned_cols=255 Identities=16% Similarity=0.219 Sum_probs=197.5
Q ss_pred ceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeec------C----C--eeEEEEEeecCCCCeEEEEeCCCCC
Q 009569 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKE------D----G--QVSLKHRLSGHRKPVFTVSWSPNDH 330 (532)
Q Consensus 263 ~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~------~----~--~~~~~~~~~~h~~~v~~l~~s~~~~ 330 (532)
..+.+++ .+..|.+++|+|.|.+.|+|+...+++|-.... + . .....+.-+.|.+.|.|.+|||+|+
T Consensus 24 ~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge 102 (350)
T KOG0641|consen 24 EAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE 102 (350)
T ss_pred EEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC
Confidence 4455555 567899999999999999999999998865431 1 0 0122344567999999999999999
Q ss_pred EEEEeeCCCcEEEEECCCCcEE-----EEeeccCCceEEEEEeeC----CCeEEEEe-CCCcEEEEECCCCeEEEeecCc
Q 009569 331 QLLTCGQEEAIRRWDVNSGECL-----HVYEKTGVGLISCGWFLD----GGGIFAGM-TDKSICLWDLDGRELESWKGQK 400 (532)
Q Consensus 331 ~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~i~~~~~~~~----~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 400 (532)
+|++|+.|.+|++..+....+- ..|..|.+.|..++|..+ +..+++++ .|..|++-|...++-..-...|
T Consensus 103 liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sgh 182 (350)
T KOG0641|consen 103 LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGH 182 (350)
T ss_pred eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCC
Confidence 9999999999999877544332 357789999999999753 44566544 4667777787655554445555
Q ss_pred cCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc-eeee-----e---cCCceeEEEEcCCCCEEEEEecCCeEEEEecC
Q 009569 401 TLRISDMAITDDGKRIISICREAAILLLDREANF-ERWI-----E---EEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (532)
Q Consensus 401 ~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~-~~~~-----~---~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~ 471 (532)
.+.|.++ ++-+|-.+++|+.|.+|++||++-.. .... . ....|.+++..|.|++|++|..|....+||++
T Consensus 183 tghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir 261 (350)
T KOG0641|consen 183 TGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR 261 (350)
T ss_pred cccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee
Confidence 5567664 45568899999999999999998765 2221 1 23679999999999999999999999999999
Q ss_pred CCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCCcee
Q 009569 472 SDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPFAKK 523 (532)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~~~~ 523 (532)
.+ +.++.|..|...+.. +.| +|...|+++++.|.+|++=|+......+
T Consensus 262 g~-r~iq~f~phsadir~--vrf-sp~a~yllt~syd~~ikltdlqgdla~e 309 (350)
T KOG0641|consen 262 GG-RMIQRFHPHSADIRC--VRF-SPGAHYLLTCSYDMKIKLTDLQGDLAHE 309 (350)
T ss_pred CC-ceeeeeCCCccceeE--EEe-CCCceEEEEecccceEEEeecccchhhc
Confidence 98 999999999987443 344 9999999999999999999998764433
No 97
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.4e-25 Score=222.52 Aligned_cols=244 Identities=12% Similarity=0.181 Sum_probs=204.3
Q ss_pred cEEEEEEcc-CCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCC-CCEEEEeeCCCcEEEEECCCCcE
Q 009569 274 EVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNSGEC 351 (532)
Q Consensus 274 ~V~~v~~s~-~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~ 351 (532)
.+..|.|+. +.++|||++..|.|.+||+.....-+.+..|..|...++++.|++. ..+|++|+.||+|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 345677876 6789999999999999999853333455678899999999999984 57899999999999999999999
Q ss_pred EEEeeccCCceEEEEEee-CCCeEEEEeCCCcEEEEECCC-CeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEE
Q 009569 352 LHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429 (532)
Q Consensus 352 ~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd 429 (532)
..++.+....|..+.|+| .+..|+++...|.+.+||++. .........|.++|.++.|+|++.+||+|+.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 999998889999999999 678899999999999999985 334445566777999999999999999999999999999
Q ss_pred CCCCc---eeeeecCCceeEEEEcCCCCEEE-EEe--cCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEE
Q 009569 430 REANF---ERWIEEEEVITSFSLSKDNKYLL-VNL--INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIA 503 (532)
Q Consensus 430 ~~~~~---~~~~~~~~~i~~~~~sp~~~~l~-~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~ 503 (532)
..+.+ ...+....++.++.|-|...+.+ +++ .|-.|+|||++...-+..++..|...+.. ++|-+.|-..+.
T Consensus 249 ~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~--i~W~~~d~~~l~ 326 (839)
T KOG0269|consen 249 MTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTG--IAWDSGDRINLW 326 (839)
T ss_pred ccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccc--eeccCCCceeeE
Confidence 98766 55667788999999999876544 443 36789999999887888999999988655 455466778899
Q ss_pred EEeCCCcEEEEeCCCC
Q 009569 504 SGSEDSQVNIFLSFSP 519 (532)
Q Consensus 504 sgs~dg~i~iw~~~~~ 519 (532)
+++.||.|..-.++++
T Consensus 327 s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 327 SCSKDGTVLQHLFKNA 342 (839)
T ss_pred eecCccHHHHhhhhcc
Confidence 9999999877666554
No 98
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=2.6e-23 Score=181.94 Aligned_cols=264 Identities=14% Similarity=0.166 Sum_probs=207.2
Q ss_pred cccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEcc-CCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCC
Q 009569 239 FHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317 (532)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~-~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (532)
..++.+..+++|..... ....-....+|.+.|-.++|+| ....+++++.|.+|++||+..++ +.......
T Consensus 36 asgs~dktv~v~n~e~~-----r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k---~~~~i~~~- 106 (313)
T KOG1407|consen 36 ASGSFDKTVSVWNLERD-----RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGK---CTARIETK- 106 (313)
T ss_pred eecccCCceEEEEecch-----hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCc---EEEEeecc-
Confidence 35566677777764432 1112234678999999999999 66789999999999999999774 44444333
Q ss_pred CCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEee
Q 009569 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK 397 (532)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 397 (532)
..-..+.|+|+|.+++.++.|..|...|.++.+.....+. ...+..++|+.++.+++.....|.|.|.....-+.....
T Consensus 107 ~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si 185 (313)
T KOG1407|consen 107 GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSI 185 (313)
T ss_pred CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEecCCceEEEEecccccccccc
Confidence 3334689999999999999999999999998887766553 445777889988888888888899999998765544445
Q ss_pred cCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCc
Q 009569 398 GQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK 475 (532)
Q Consensus 398 ~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~ 475 (532)
..|.....||.|+|+|+++++|+.|..+.+||+.... ..+..++-+|..++||.||++|+++++|..|-|=++.++ .
T Consensus 186 ~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG-d 264 (313)
T KOG1407|consen 186 KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETG-D 264 (313)
T ss_pred ccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccC-C
Confidence 5555689999999999999999999999999998866 666778999999999999999999999999999999999 7
Q ss_pred ceeEEeccccceEEEEEccCCCCCcEEEEEeCC---------CcEEEEeCC
Q 009569 476 LVSRYKGHKRARFVIRSCFGGFEQAFIASGSED---------SQVNIFLSF 517 (532)
Q Consensus 476 ~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~d---------g~i~iw~~~ 517 (532)
.+..++... +. ..++| +|...+||-++.| |.|++|-+.
T Consensus 265 ~~~eI~~~~-~t--~tVAW-HPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 265 RVWEIPCEG-PT--FTVAW-HPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred eEEEeeccC-Cc--eeEEe-cCCCceeeEEecCCCCccccccceeEEecCC
Confidence 777776443 32 34566 9999999877654 456666443
No 99
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=5.4e-24 Score=219.58 Aligned_cols=245 Identities=16% Similarity=0.228 Sum_probs=201.2
Q ss_pred ccccEEEEEEccCCCEEEEEe--CCCeEEEEEeecC--------C-eeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCC
Q 009569 271 HSDEVWFLQFSHDGKYLASSS--KDQSAIIWEVKED--------G-QVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE 339 (532)
Q Consensus 271 h~~~V~~v~~s~~g~~las~s--~dg~i~iwd~~~~--------~-~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 339 (532)
+...|.+++.+|||..+|||+ .|+.++||+...- . -.+.+.+...|.+.|.|+.|+|||++||+|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 345799999999999999999 9999999997521 1 1234556678999999999999999999999999
Q ss_pred cEEEEECCC------------------CcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCcc
Q 009569 340 AIRRWDVNS------------------GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKT 401 (532)
Q Consensus 340 ~i~iwd~~~------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 401 (532)
.|.||.... .+++..+.+|...|..++|+|++.++++++.|++|.+||..+.........|.
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~ 171 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ 171 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccc
Confidence 999999862 13667889999999999999999999999999999999999877777777777
Q ss_pred CceEEEEEeeCCCEEEEEECCCeEEEEECCCCc-eee-e------ecCCceeEEEEcCCCCEEEEEec----CCeEEEEe
Q 009569 402 LRISDMAITDDGKRIISICREAAILLLDREANF-ERW-I------EEEEVITSFSLSKDNKYLLVNLI----NQEIHLWS 469 (532)
Q Consensus 402 ~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~-~~~-~------~~~~~i~~~~~sp~~~~l~~~~~----dg~i~iwd 469 (532)
+.|-.+.|+|-|++|++-+.|++|++|++.+.. .+. . .....+..++|||||++|++... -.++.|.+
T Consensus 172 s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie 251 (942)
T KOG0973|consen 172 SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE 251 (942)
T ss_pred ccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEe
Confidence 799999999999999999999999999977654 222 1 12345788999999999998743 33688888
Q ss_pred cCCCCcceeEEeccccceEEEEEccCCCC------C-----------cEEEEEeCCCcEEEEeCCCC
Q 009569 470 IESDPKLVSRYKGHKRARFVIRSCFGGFE------Q-----------AFIASGSEDSQVNIFLSFSP 519 (532)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~d------~-----------~~l~sgs~dg~i~iw~~~~~ 519 (532)
-.+. +.-..+.||..++.+++ | +|. . ..+|+||.|++|-||.....
T Consensus 252 R~tW-k~~~~LvGH~~p~evvr--F-nP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~ 314 (942)
T KOG0973|consen 252 RGTW-KVDKDLVGHSAPVEVVR--F-NPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP 314 (942)
T ss_pred cCCc-eeeeeeecCCCceEEEE--e-ChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC
Confidence 6555 77788999999876644 3 331 1 16889999999999998654
No 100
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2e-24 Score=187.21 Aligned_cols=242 Identities=21% Similarity=0.315 Sum_probs=196.1
Q ss_pred HHHHHHhcccccccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEcc--CCCEEEEEeCCCeEEEEEeec
Q 009569 226 VEKALDVQRDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSH--DGKYLASSSKDQSAIIWEVKE 303 (532)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~--~g~~las~s~dg~i~iwd~~~ 303 (532)
+..+.--.....+.+.++|+.+.+|..... -+.+++..|.||.++|+.++|.+ -|.+||++++||.|.||.-..
T Consensus 14 IHda~lDyygkrlATcsSD~tVkIf~v~~n----~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~ 89 (299)
T KOG1332|consen 14 IHDAQLDYYGKRLATCSSDGTVKIFEVRNN----GQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEEN 89 (299)
T ss_pred hhHhhhhhhcceeeeecCCccEEEEEEcCC----CCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCC
Confidence 333333334455678899999999975543 23578899999999999999987 899999999999999999885
Q ss_pred CCeeEEEEEeecCCCCeEEEEeCCC--CCEEEEeeCCCcEEEEECCCC---cEEEEeeccCCceEEEEEeeC---C----
Q 009569 304 DGQVSLKHRLSGHRKPVFTVSWSPN--DHQLLTCGQEEAIRRWDVNSG---ECLHVYEKTGVGLISCGWFLD---G---- 371 (532)
Q Consensus 304 ~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~---~---- 371 (532)
+ .+........|...|++++|.|. |-.|++++.||.|.|.+.++. ........|.-.|++++|.|. |
T Consensus 90 g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~ 168 (299)
T KOG1332|consen 90 G-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVD 168 (299)
T ss_pred C-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccc
Confidence 5 67777788899999999999996 568999999999999998654 223456689999999999985 4
Q ss_pred -------CeEEEEeCCCcEEEEECCCC--eEEEeecCccCceEEEEEeeCC----CEEEEEECCCeEEEEECCCCc----
Q 009569 372 -------GGIFAGMTDKSICLWDLDGR--ELESWKGQKTLRISDMAITDDG----KRIISICREAAILLLDREANF---- 434 (532)
Q Consensus 372 -------~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~I~iwd~~~~~---- 434 (532)
+.|++|+.|+.|+||+.+.. .+......|.+.|++++|.|.- .+|++++.||++.||..+...
T Consensus 169 ~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk 248 (299)
T KOG1332|consen 169 QGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWK 248 (299)
T ss_pred cCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccc
Confidence 56999999999999999763 2334355667799999999964 479999999999999887432
Q ss_pred -eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCC
Q 009569 435 -ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (532)
Q Consensus 435 -~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~ 472 (532)
..+......+..++||+.|+.|++++.|+.|.+|.-..
T Consensus 249 ~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 249 KTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 22334566799999999999999999999999997543
No 101
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.3e-23 Score=197.37 Aligned_cols=242 Identities=18% Similarity=0.319 Sum_probs=197.9
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 009569 269 EAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS 348 (532)
Q Consensus 269 ~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 348 (532)
++|...|.+++.|+||+|||+|+.|..|.||+..+. ..++.+.+|.+.|.+++|-.....+++++.|++|++|+++.
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~---ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTL---EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCccc---chhhcccccccceeeeeeecCccceeeeecCCceEEEehhH
Confidence 489999999999999999999999999999999876 45677999999999999998888999999999999999999
Q ss_pred CcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEE
Q 009569 349 GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLL 428 (532)
Q Consensus 349 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iw 428 (532)
...+.++-+|...|.++....-++.+-+|+.|+++++|++.......+..+ .+.+.|++|-.+ ..+++|+.+|.|.+|
T Consensus 276 ~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~-~~sidcv~~In~-~HfvsGSdnG~IaLW 353 (479)
T KOG0299|consen 276 LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGG-EGSIDCVAFIND-EHFVSGSDNGSIALW 353 (479)
T ss_pred hHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCC-CCCeeeEEEecc-cceeeccCCceEEEe
Confidence 999999999999999999888888888888999999999965444444444 448999999765 579999999999999
Q ss_pred ECCCCceee---ee-----------cCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEcc
Q 009569 429 DREANFERW---IE-----------EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCF 494 (532)
Q Consensus 429 d~~~~~~~~---~~-----------~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 494 (532)
++.+.+..+ .. +..+|++++..|...++++|+.+|.|++|-+..+...+..+....-..++..++|
T Consensus 354 s~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f 433 (479)
T KOG0299|consen 354 SLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAF 433 (479)
T ss_pred eecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEE
Confidence 998876221 11 1238999999999999999999999999999887555555544444455566676
Q ss_pred CCCCCcEEEEE-eCCCcEEEEeC
Q 009569 495 GGFEQAFIASG-SEDSQVNIFLS 516 (532)
Q Consensus 495 ~s~d~~~l~sg-s~dg~i~iw~~ 516 (532)
+++|++|++| +..-.+--|-.
T Consensus 434 -~~sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 434 -SNSGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred -ccCCCEEEEecccccccceeeE
Confidence 8889866655 44444444443
No 102
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=1.5e-23 Score=205.88 Aligned_cols=262 Identities=16% Similarity=0.291 Sum_probs=213.7
Q ss_pred cccccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEE-EEEcc-CCCEEEEEeCCCeEEEEEeecCCeeEEEEE
Q 009569 235 DSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWF-LQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHR 312 (532)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~-v~~s~-~g~~las~s~dg~i~iwd~~~~~~~~~~~~ 312 (532)
..|+.+++.++.+++|..+.... -....+++|.+-|.+ +++-+ ++-.+++|+.|++|.+|..... .+...
T Consensus 25 ~~~i~s~sRd~t~~vw~~~~~~~-----l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~---~P~~~ 96 (745)
T KOG0301|consen 25 GVCIISGSRDGTVKVWAKKGKQY-----LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA---EPLYT 96 (745)
T ss_pred CeEEeecCCCCceeeeeccCccc-----ccceecccCcceeeccceeccccCcceEeecccceEEEEecCCC---Cchhh
Confidence 34777888888999997653211 223457778888877 88876 5556999999999999999755 56788
Q ss_pred eecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCe
Q 009569 313 LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE 392 (532)
Q Consensus 313 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 392 (532)
+.+|.+.|.+++...++. +++||.|.++++|.. +++...+.+|...|+++...|++ .+++|+.|.+|++|.- +..
T Consensus 97 LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~-~~~ 171 (745)
T KOG0301|consen 97 LKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG-GTL 171 (745)
T ss_pred hhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC-Cch
Confidence 999999999999877776 999999999999986 66777799999999999999987 8999999999999985 333
Q ss_pred EEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc-eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecC
Q 009569 393 LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (532)
Q Consensus 393 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~ 471 (532)
+..+. .|...|+.+++-+++ .+++++.||.|++|++.... ....+|..-+.+++..+++..++++++|++++||+..
T Consensus 172 l~tf~-gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 172 LKTFS-GHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred hhhhc-cchhheeeeEEecCC-CeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 44444 466699999999875 58899999999999996666 8888999999999988899999999999999999975
Q ss_pred CCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 472 SDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
.+.+.+.-....++...+ -++|. |++|+.||.|+||....
T Consensus 250 ---e~~q~I~lPttsiWsa~~---L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 250 ---ECVQVITLPTTSIWSAKV---LLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred ---ceEEEEecCccceEEEEE---eeCCC-EEEeccCceEEEEEecc
Confidence 577777766656555333 34554 67899999999998874
No 103
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.1e-23 Score=208.27 Aligned_cols=245 Identities=14% Similarity=0.200 Sum_probs=201.8
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 009569 269 EAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS 348 (532)
Q Consensus 269 ~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 348 (532)
.+|+..-+.++|.|+|++|++++.||.|++|+..+... ...++..+...|.+++.. +.+|++|+.+++|.+|.+.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e--~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE--EPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc--CCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCC
Confidence 46999999999999999999999999999999875521 112233377778887764 55999999999999999999
Q ss_pred CcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEE
Q 009569 349 GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLL 428 (532)
Q Consensus 349 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iw 428 (532)
++.-..+.....++.+++++-+|++++.|+.|-.|++.++...........+..+|.++.|+|.+++||+.+.||.|++|
T Consensus 86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 88766666677889999999999999999999999999998655555555666699999999999999999999999999
Q ss_pred ECCCCc--eeee--------ecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCC
Q 009569 429 DREANF--ERWI--------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE 498 (532)
Q Consensus 429 d~~~~~--~~~~--------~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d 498 (532)
|+.++. ..+. .....++.++|+|++..+++.+.|+.|++|+..+. .....+...........+.| +|+
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w-e~~f~Lr~~~~ss~~~~~~w-sPn 243 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW-ELQFKLRDKLSSSKFSDLQW-SPN 243 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc-eeheeecccccccceEEEEE-cCC
Confidence 999876 1111 11345778999999888888888999999998887 77777765544333445566 999
Q ss_pred CcEEEEEeCCCcEEEEeCCCC
Q 009569 499 QAFIASGSEDSQVNIFLSFSP 519 (532)
Q Consensus 499 ~~~l~sgs~dg~i~iw~~~~~ 519 (532)
|+|||+++.||.|.|||+++.
T Consensus 244 G~YiAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 244 GKYIAASTLDGQILVWNVDTH 264 (933)
T ss_pred CcEEeeeccCCcEEEEecccc
Confidence 999999999999999999963
No 104
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=9e-24 Score=198.55 Aligned_cols=237 Identities=16% Similarity=0.298 Sum_probs=187.6
Q ss_pred cccccccCCCCCceeeccCCccCCCC---CcceeEEcccccccEEEEEEccC-CCEEEEEeCCCeEEEEEeecCCe----
Q 009569 235 DSCLFHNTSDSDFSLYSDHQCGRNRI---PSQTLQILEAHSDEVWFLQFSHD-GKYLASSSKDQSAIIWEVKEDGQ---- 306 (532)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~h~~~V~~v~~s~~-g~~las~s~dg~i~iwd~~~~~~---- 306 (532)
..++.+.+..+.+.+|+-..-..... ...+-..|.+|.++=+.++|++. .-+|++|+.|++|.+||+.....
T Consensus 137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~ 216 (422)
T KOG0264|consen 137 PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKV 216 (422)
T ss_pred CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCcc
Confidence 34445566777888887543322221 33556689999998889999994 45799999999999999985443
Q ss_pred eEEEEEeecCCCCeEEEEeCC-CCCEEEEeeCCCcEEEEECC--CCcEEEEeeccCCceEEEEEee-CCCeEEEEeCCCc
Q 009569 307 VSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVN--SGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKS 382 (532)
Q Consensus 307 ~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~ 382 (532)
......+.+|...|..++|++ +...+++++.|+.+.|||++ +.++......|.+.+.|++|+| ++..|++|+.|++
T Consensus 217 ~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t 296 (422)
T KOG0264|consen 217 VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT 296 (422)
T ss_pred ccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc
Confidence 456678899999999999999 45688999999999999999 5666677889999999999999 6677888999999
Q ss_pred EEEEECCC--CeEEEeecCccCceEEEEEeeCC-CEEEEEECCCeEEEEECCCCc----------------eeeeecCCc
Q 009569 383 ICLWDLDG--RELESWKGQKTLRISDMAITDDG-KRIISICREAAILLLDREANF----------------ERWIEEEEV 443 (532)
Q Consensus 383 i~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~I~iwd~~~~~----------------~~~~~~~~~ 443 (532)
|++||+++ ..+..+.. |...|..+.|+|+. ..+++++.|+.+.+||+..-. ..--+|...
T Consensus 297 V~LwDlRnL~~~lh~~e~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~k 375 (422)
T KOG0264|consen 297 VALWDLRNLNKPLHTFEG-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAK 375 (422)
T ss_pred EEEeechhcccCceeccC-CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccc
Confidence 99999986 44444444 44599999999965 478888899999999996532 112257888
Q ss_pred eeEEEEcCCCCE-EEEEecCCeEEEEecCC
Q 009569 444 ITSFSLSKDNKY-LLVNLINQEIHLWSIES 472 (532)
Q Consensus 444 i~~~~~sp~~~~-l~~~~~dg~i~iwd~~~ 472 (532)
|..++|+|+..+ |++.+.|+.+.||.+..
T Consensus 376 V~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 376 VSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 999999998765 55678899999999864
No 105
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.4e-23 Score=184.66 Aligned_cols=247 Identities=18% Similarity=0.290 Sum_probs=185.2
Q ss_pred eEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecC------------------------------------CeeE
Q 009569 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED------------------------------------GQVS 308 (532)
Q Consensus 265 ~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~------------------------------------~~~~ 308 (532)
+..|++|.+.|++++|+.||++|||++.|++|++|+++.- ..+.
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4568999999999999999999999999999999998641 0110
Q ss_pred EEEE--------------------eecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEe
Q 009569 309 LKHR--------------------LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWF 368 (532)
Q Consensus 309 ~~~~--------------------~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~ 368 (532)
.... -..|.-.|..+-...++.+|++++.|..|.+|+++ |+.+..+......-+..+.+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 0000 01234445556666678899999999999999998 99998888777777889999
Q ss_pred eCCCeEEEEeCCCcEEEEECC---CC------eEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc-----
Q 009569 369 LDGGGIFAGMTDKSICLWDLD---GR------ELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF----- 434 (532)
Q Consensus 369 ~~~~~l~~~~~dg~i~iwd~~---~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~----- 434 (532)
|+|+++++++.--.|++|.+- .+ ....+.+ |...|..++|+++...+++.+.||.+++||..-.-
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG-H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG-HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc-chhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 999999999988899999872 22 2233344 44589999999999999999999999999985321
Q ss_pred --------eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEE-eccccceEEEEEccCCCCCcEEEEE
Q 009569 435 --------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRY-KGHKRARFVIRSCFGGFEQAFIASG 505 (532)
Q Consensus 435 --------~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~i~~~~~s~d~~~l~sg 505 (532)
..+....+....++++|+|+.|++.. ...+++|..+++ +....+ ..|...+.. +.| +++|++++++
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g-~~~~~~e~~h~~~Is~--is~-~~~g~~~atc 391 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDG-KDYPELEDIHSTTISS--ISY-SSDGKYIATC 391 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccC-ccchhHHHhhcCceee--EEe-cCCCcEEeee
Confidence 11112233445899999999988776 567999999887 444444 456665333 444 9999999998
Q ss_pred eCCCcEEEEeCCCC
Q 009569 506 SEDSQVNIFLSFSP 519 (532)
Q Consensus 506 s~dg~i~iw~~~~~ 519 (532)
+ |..++++.-..+
T Consensus 392 G-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 392 G-DRYVRVIRNTPG 404 (420)
T ss_pred c-ceeeeeecCCCc
Confidence 6 667777764333
No 106
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.8e-23 Score=210.61 Aligned_cols=205 Identities=17% Similarity=0.293 Sum_probs=168.4
Q ss_pred cceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCC-CCCEEEEeeCCCc
Q 009569 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEA 340 (532)
Q Consensus 262 ~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~ 340 (532)
.++++.+.||.+.|..+.||.++ +|+++|.|.+|++|++... .++..| .|..-|+|++|+| |.+|+++|+.||.
T Consensus 359 ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~---~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD~K 433 (712)
T KOG0283|consen 359 EKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRK---ECLKVF-SHNDFVTCVAFNPVDDRYFISGSLDGK 433 (712)
T ss_pred ccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCc---ceeeEE-ecCCeeEEEEecccCCCcEeecccccc
Confidence 47888999999999999999765 8999999999999999865 455555 4999999999999 7899999999999
Q ss_pred EEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeec--------CccCceEEEEEeeC
Q 009569 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG--------QKTLRISDMAITDD 412 (532)
Q Consensus 341 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~s~~ 412 (532)
|+||++...+.+.-.. -..-|++++|.|||+..++|+.+|.+++|++.+.++..-.. .....|+.+.|.|.
T Consensus 434 vRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~ 512 (712)
T KOG0283|consen 434 VRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPG 512 (712)
T ss_pred eEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCC
Confidence 9999998776655444 34779999999999999999999999999998755433221 11227999999984
Q ss_pred C-CEEEEEECCCeEEEEECCCCc--eeeeec--CCceeEEEEcCCCCEEEEEecCCeEEEEecCC
Q 009569 413 G-KRIISICREAAILLLDREANF--ERWIEE--EEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (532)
Q Consensus 413 ~-~~l~~~~~dg~I~iwd~~~~~--~~~~~~--~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~ 472 (532)
. ..+++.+.|..|+|||.++.. ..+.+. ...-....|+.||++|++++.|..|++|++..
T Consensus 513 ~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 513 DPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred CCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 3 457788999999999997665 444433 23456788999999999999999999999844
No 107
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.3e-23 Score=185.82 Aligned_cols=260 Identities=19% Similarity=0.288 Sum_probs=191.2
Q ss_pred CCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCC
Q 009569 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE 338 (532)
Q Consensus 259 ~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 338 (532)
.+|.+...+++... -.|+.|++.|.+||+|+.||.|.|||+.+- .....+.+|..+|.+++||+||++|+|++.|
T Consensus 12 ~~PEel~~tld~~~--a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~---~iar~lsaH~~pi~sl~WS~dgr~LltsS~D 86 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL--AECCQFSRWGDYLAVGCANGRVVIYDFDTF---RIARMLSAHVRPITSLCWSRDGRKLLTSSRD 86 (405)
T ss_pred cChHhhceeccCCc--cceEEeccCcceeeeeccCCcEEEEEcccc---chhhhhhccccceeEEEecCCCCEeeeecCC
Confidence 44555556665222 789999999999999999999999999865 4567788999999999999999999999999
Q ss_pred CcEEEEECCCCcEEEEeeccCCceEEEEEeeCC-CeEEEEeCCCcEEEEECCCCeEEEeecCcc----CceEEEEEeeCC
Q 009569 339 EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELESWKGQKT----LRISDMAITDDG 413 (532)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~~~~s~~~ 413 (532)
..|.+||+..|.+++.+. ...+|+.+.|+|.. +.+++.-.+..-.+-++.......+..... ....+..|++.|
T Consensus 87 ~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g 165 (405)
T KOG1273|consen 87 WSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRG 165 (405)
T ss_pred ceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCC
Confidence 999999999999988887 57789999999943 334443344444555554322222221111 123344688999
Q ss_pred CEEEEEECCCeEEEEECCCCc--eeeee-cCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCC--------cceeEEec
Q 009569 414 KRIISICREAAILLLDREANF--ERWIE-EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP--------KLVSRYKG 482 (532)
Q Consensus 414 ~~l~~~~~dg~I~iwd~~~~~--~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~ 482 (532)
++|++|...|.+.+||..+.+ ..+.. ....|..+.++..|+++++.+.|..|+.|+++.-. ++.++++.
T Consensus 166 ~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qD 245 (405)
T KOG1273|consen 166 KYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQD 245 (405)
T ss_pred CEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHH
Confidence 999999999999999999877 22222 23678899999999999999999999999986320 11122222
Q ss_pred cccceEEEEEccCCCCCcEEEEEeCC-CcEEEEeCCCCCceeee
Q 009569 483 HKRARFVIRSCFGGFEQAFIASGSED-SQVNIFLSFSPFAKKIK 525 (532)
Q Consensus 483 ~~~~~~~i~~~~~s~d~~~l~sgs~d-g~i~iw~~~~~~~~~~~ 525 (532)
--+...--.+|| +.+|.|++.|+.- -.+|||....|.+.++.
T Consensus 246 vVNk~~Wk~ccf-s~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL 288 (405)
T KOG1273|consen 246 VVNKLQWKKCCF-SGDGEYVCAGSARAHALYIWEKSIGSLVKIL 288 (405)
T ss_pred HHhhhhhhheee-cCCccEEEeccccceeEEEEecCCcceeeee
Confidence 111111134677 8899999888753 45999999999877664
No 108
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=2e-23 Score=205.13 Aligned_cols=243 Identities=17% Similarity=0.273 Sum_probs=206.1
Q ss_pred ceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEE-EEeCC-CCCEEEEeeCCCc
Q 009569 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT-VSWSP-NDHQLLTCGQEEA 340 (532)
Q Consensus 263 ~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~-l~~s~-~~~~l~s~~~dg~ 340 (532)
+..+.+++|+..|..+++.+.. .++++|.||++++|+-.. +.+.....+.+|.+-|.. +++-+ ++-.+++|+.|.+
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~-~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKG-KQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccC-cccccceecccCcceeeccceeccccCcceEeecccce
Confidence 5567899999999998876554 799999999999999874 344455677788887777 77775 4456999999999
Q ss_pred EEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEE
Q 009569 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC 420 (532)
Q Consensus 341 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 420 (532)
|.+|...+..+..++.+|...|+++....++. +++|+.|.++++|-... +......|...|++++.-|++ .+++|+
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~--l~~~l~gH~asVWAv~~l~e~-~~vTgs 158 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE--LVYSLQGHTASVWAVASLPEN-TYVTGS 158 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh--hhcccCCcchheeeeeecCCC-cEEecc
Confidence 99999999999999999999999999877776 99999999999997643 222244555699999999988 899999
Q ss_pred CCCeEEEEECCCCceeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCc
Q 009569 421 REAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA 500 (532)
Q Consensus 421 ~dg~I~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~ 500 (532)
.|.+|++|.-.+...++.+|...|..+++-+++ .+++++.||.|++|++ ++ +.+.++.+|..-+|.+.. .+++.
T Consensus 159 aDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~g-e~l~~~~ghtn~vYsis~---~~~~~ 232 (745)
T KOG0301|consen 159 ADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DG-EVLLEMHGHTNFVYSISM---ALSDG 232 (745)
T ss_pred CcceeeeccCCchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cC-ceeeeeeccceEEEEEEe---cCCCC
Confidence 999999999866668899999999999999775 4778888999999999 44 799999999999888773 45678
Q ss_pred EEEEEeCCCcEEEEeCC
Q 009569 501 FIASGSEDSQVNIFLSF 517 (532)
Q Consensus 501 ~l~sgs~dg~i~iw~~~ 517 (532)
.|+|+++|++++||+..
T Consensus 233 ~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 233 LIVSTGEDRTLRIWKKD 249 (745)
T ss_pred eEEEecCCceEEEeecC
Confidence 99999999999999987
No 109
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=1.4e-23 Score=206.24 Aligned_cols=278 Identities=18% Similarity=0.249 Sum_probs=220.7
Q ss_pred ccccccccCCCCCceeeccCCccCCCC------Cc------------------------ceeEEcccccccEEEEEEccC
Q 009569 234 RDSCLFHNTSDSDFSLYSDHQCGRNRI------PS------------------------QTLQILEAHSDEVWFLQFSHD 283 (532)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~------------------------~~~~~l~~h~~~V~~v~~s~~ 283 (532)
...|+.+.+.|+.|++|+...|..... .. +-....-+....|.+++.||+
T Consensus 391 p~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~ 470 (1080)
T KOG1408|consen 391 PRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD 470 (1080)
T ss_pred CccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC
Confidence 345777889999999998776533211 00 001111123456999999999
Q ss_pred CCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCC---CCCEEEEeeCCCcEEEEECCC-CcEEEEeeccC
Q 009569 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP---NDHQLLTCGQEEAIRRWDVNS-GECLHVYEKTG 359 (532)
Q Consensus 284 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~---~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~ 359 (532)
|++||+|..-|+++||++.+- ........|...|.|+.||. ..++|++++.|..|+|||+.. -..++++.+|.
T Consensus 471 gqhLAsGDr~GnlrVy~Lq~l---~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HS 547 (1080)
T KOG1408|consen 471 GQHLASGDRGGNLRVYDLQEL---EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHS 547 (1080)
T ss_pred cceecccCccCceEEEEehhh---hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccc
Confidence 999999999999999999743 45566789999999999986 347899999999999999954 45678899999
Q ss_pred CceEEEEEeeCC--CeEEEEeCCCcEEEEECC-C--CeEEE--eecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCC
Q 009569 360 VGLISCGWFLDG--GGIFAGMTDKSICLWDLD-G--RELES--WKGQKTLRISDMAITDDGKRIISICREAAILLLDREA 432 (532)
Q Consensus 360 ~~i~~~~~~~~~--~~l~~~~~dg~i~iwd~~-~--~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~ 432 (532)
..|+++.|..+| ..+++++.|+.|.+=-.. . +.+.. ........+++|++.|..+++++++.|..|+|||+.+
T Consensus 548 ssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~s 627 (1080)
T KOG1408|consen 548 SSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIES 627 (1080)
T ss_pred cceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccc
Confidence 999999999877 778899999887543222 1 11111 1111122689999999999999999999999999999
Q ss_pred Cc--eeee---ecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeC
Q 009569 433 NF--ERWI---EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE 507 (532)
Q Consensus 433 ~~--~~~~---~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~ 507 (532)
++ ..+. .|++....+...|.|-|+++.+.|.++.++|..++ +++.+..||...++. +.| .+|.+.|++.+.
T Consensus 628 gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg-EcvA~m~GHsE~VTG--~kF-~nDCkHlISvsg 703 (1080)
T KOG1408|consen 628 GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG-ECVAQMTGHSEAVTG--VKF-LNDCKHLISVSG 703 (1080)
T ss_pred cceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc-hhhhhhcCcchheee--eee-cccchhheeecC
Confidence 88 3332 46677889999999999999999999999999999 999999999998555 666 899999999999
Q ss_pred CCcEEEEeCCC
Q 009569 508 DSQVNIFLSFS 518 (532)
Q Consensus 508 dg~i~iw~~~~ 518 (532)
||+|.||.+..
T Consensus 704 DgCIFvW~lp~ 714 (1080)
T KOG1408|consen 704 DGCIFVWKLPL 714 (1080)
T ss_pred CceEEEEECch
Confidence 99999999875
No 110
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.4e-22 Score=181.30 Aligned_cols=246 Identities=15% Similarity=0.263 Sum_probs=193.4
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEEe-ecCCeeEEEEEeecCCCCeEEEEeCC--CCCEEEEeeCCCcEEEEE
Q 009569 269 EAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEV-KEDGQVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQEEAIRRWD 345 (532)
Q Consensus 269 ~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~-~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~iwd 345 (532)
.+|.+-|+|+.|.+.|+.+|||+.|++|+|||. ...+.+.+....+.|.+.|..+.|.+ =|+.+|+|+.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 469999999999999999999999999999995 44567788888999999999999976 378999999999999998
Q ss_pred CCC---------CcEEEEeeccCCceEEEEEee--CCCeEEEEeCCCcEEEEECCC-CeEEEee------------cCcc
Q 009569 346 VNS---------GECLHVYEKTGVGLISCGWFL--DGGGIFAGMTDKSICLWDLDG-RELESWK------------GQKT 401 (532)
Q Consensus 346 ~~~---------~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~iwd~~~-~~~~~~~------------~~~~ 401 (532)
-.. .....++......|+.++|.| -|-.+++++.||.++||+.-. ..+..+. ..+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 621 123445666788899999999 577899999999999998743 2222221 1223
Q ss_pred CceEEEEEeeC---CCEEEEEECC-----CeEEEEECCCCc------eeeeecCCceeEEEEcCC----CCEEEEEecCC
Q 009569 402 LRISDMAITDD---GKRIISICRE-----AAILLLDREANF------ERWIEEEEVITSFSLSKD----NKYLLVNLINQ 463 (532)
Q Consensus 402 ~~v~~~~~s~~---~~~l~~~~~d-----g~I~iwd~~~~~------~~~~~~~~~i~~~~~sp~----~~~l~~~~~dg 463 (532)
....|+.|+|. ..+|++|+.+ +.++||...... ..+..|..+|+.++|.|+ ...|++++.||
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 36789999974 4578887765 478888765443 445688999999999995 36899999999
Q ss_pred eEEEEecCCC-------------------CcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 464 EIHLWSIESD-------------------PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 464 ~i~iwd~~~~-------------------~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
|+||.+... -+.+..+..|...++. +.| +-.|..|++.|.||+|++|...-
T Consensus 250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWr--v~w-NmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWR--VRW-NMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEE--EEE-eeeeeEEeecCCCceeeehhhhh
Confidence 999999731 1234556788877555 566 77899999999999999998753
No 111
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=6.9e-24 Score=200.73 Aligned_cols=265 Identities=15% Similarity=0.281 Sum_probs=213.2
Q ss_pred CCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEE
Q 009569 243 SDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322 (532)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 322 (532)
+.+.+.+|+...- .+..|...+-.+. ..+.|.+|...|||+.|++|+.-.++.|||+... .......+....-.+.+
T Consensus 438 GkgcVKVWdis~p-g~k~PvsqLdcl~-rdnyiRSckL~pdgrtLivGGeastlsiWDLAap-TprikaeltssapaCyA 514 (705)
T KOG0639|consen 438 GKGCVKVWDISQP-GNKSPVSQLDCLN-RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAP-TPRIKAELTSSAPACYA 514 (705)
T ss_pred CCCeEEEeeccCC-CCCCccccccccC-cccceeeeEecCCCceEEeccccceeeeeeccCC-CcchhhhcCCcchhhhh
Confidence 3456778875543 2233332222222 4578999999999999999999999999999854 23344445555566788
Q ss_pred EEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccC
Q 009569 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTL 402 (532)
Q Consensus 323 l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 402 (532)
++.+||.+..++|+.||.|.|||+.+...++.|++|...+.|+..++||..|.+|+-|++|+.||++.+......... .
T Consensus 515 La~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~-S 593 (705)
T KOG0639|consen 515 LAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS-S 593 (705)
T ss_pred hhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhh-h
Confidence 999999999999999999999999999999999999999999999999999999999999999999875443333333 3
Q ss_pred ceEEEEEeeCCCEEEEEECCCeEEEEECCCCc-eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEe
Q 009569 403 RISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK 481 (532)
Q Consensus 403 ~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 481 (532)
.|.++.++|++.++++|-.++.+.+....... ..+..|+.-|.++.|.+.|+++++.+.|+-+..|.+.-+ ..+...+
T Consensus 594 QIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG-asiFqsk 672 (705)
T KOG0639|consen 594 QIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG-ASIFQSK 672 (705)
T ss_pred hheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccc-cceeecc
Confidence 79999999999999999999999999887776 677788999999999999999999999999999998877 4443333
Q ss_pred ccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeC
Q 009569 482 GHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLS 516 (532)
Q Consensus 482 ~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~ 516 (532)
. ... +++|.. +.|.++|+||+.|.+-.+|.+
T Consensus 673 E-~Ss--VlsCDI-S~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 673 E-SSS--VLSCDI-SFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred c-cCc--ceeeee-ccCceEEEecCCCcceEEEEE
Confidence 2 223 333444 889999999999998888865
No 112
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.8e-22 Score=180.19 Aligned_cols=254 Identities=14% Similarity=0.213 Sum_probs=201.4
Q ss_pred ccccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeec
Q 009569 236 SCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG 315 (532)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~ 315 (532)
..+..++.|+.+++|+-...+. ..| +....|.++|.+++|+.||..+++|+.|+.+++||+.++ ....+..
T Consensus 41 ~~~~A~SWD~tVR~wevq~~g~-~~~----ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~----Q~~~v~~ 111 (347)
T KOG0647|consen 41 NLLAAGSWDGTVRIWEVQNSGQ-LVP----KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG----QVSQVAA 111 (347)
T ss_pred ceEEecccCCceEEEEEecCCc-ccc----hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC----Ceeeeee
Confidence 3344788899999998654311 111 445679999999999999999999999999999999987 2356678
Q ss_pred CCCCeEEEEeCCCCC--EEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeE
Q 009569 316 HRKPVFTVSWSPNDH--QLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL 393 (532)
Q Consensus 316 h~~~v~~l~~s~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 393 (532)
|..+|..+.|-+... .|+|||.|++|+.||++...++.++.- ...++++.. ....++++..+..|.+|++++...
T Consensus 112 Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~t 188 (347)
T KOG0647|consen 112 HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADV--LYPMAVVATAERHIAVYNLENPPT 188 (347)
T ss_pred cccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhc--cCceeEEEecCCcEEEEEcCCCcc
Confidence 999999999988665 899999999999999999998888874 445776655 355888999999999999976432
Q ss_pred --EEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCC--c--eeeeecC---------CceeEEEEcCCCCEEEE
Q 009569 394 --ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN--F--ERWIEEE---------EVITSFSLSKDNKYLLV 458 (532)
Q Consensus 394 --~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~--~--~~~~~~~---------~~i~~~~~sp~~~~l~~ 458 (532)
......-.-.+++++..+|....+.|+-+|.+.+..+... . ..+.-|. ..|++++|+|....|++
T Consensus 189 e~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvT 268 (347)
T KOG0647|consen 189 EFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVT 268 (347)
T ss_pred hhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEE
Confidence 2222222237899999999998999999999999988775 2 4444443 35889999999999999
Q ss_pred EecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEE
Q 009569 459 NLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG 505 (532)
Q Consensus 459 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sg 505 (532)
.+.||++.+||-... ..+.+...|..++.. +.| +.+|.+++-+
T Consensus 269 aGsDGtf~FWDkdar-~kLk~s~~~~qpItc--c~f-n~~G~ifaYA 311 (347)
T KOG0647|consen 269 AGSDGTFSFWDKDAR-TKLKTSETHPQPITC--CSF-NRNGSIFAYA 311 (347)
T ss_pred ecCCceEEEecchhh-hhhhccCcCCCccce--eEe-cCCCCEEEEE
Confidence 999999999998777 778888888888443 555 8889887654
No 113
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=1.3e-22 Score=197.57 Aligned_cols=280 Identities=18% Similarity=0.277 Sum_probs=205.8
Q ss_pred ccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCC
Q 009569 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317 (532)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (532)
++....++.+.+++...... ......+.....|.+.|..+.|-|....|++++.|.++++||++..+. .-...+.+|.
T Consensus 67 LavadE~G~i~l~dt~~~~f-r~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l-~G~~~~~GH~ 144 (720)
T KOG0321|consen 67 LAVADEDGGIILFDTKSIVF-RLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL-VGGRLNLGHT 144 (720)
T ss_pred EEEecCCCceeeecchhhhc-chhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee-ecceeecccc
Confidence 44556677777776543321 112233566778999999999999767899999999999999996532 2333588999
Q ss_pred CCeEEEEeCCCC-CEEEEeeCCCcEEEEECCCCc---------------------------EEEEeeccCCceEE---EE
Q 009569 318 KPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSGE---------------------------CLHVYEKTGVGLIS---CG 366 (532)
Q Consensus 318 ~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~---------------------------~~~~~~~~~~~i~~---~~ 366 (532)
..|.+++|.|.+ ..|++|+.||.|.|||++-.. .+.....+...|.+ +.
T Consensus 145 ~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv 224 (720)
T KOG0321|consen 145 GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVV 224 (720)
T ss_pred cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEE
Confidence 999999999954 688999999999999996322 01111233444555 66
Q ss_pred EeeCCCeEEEEeC-CCcEEEEECCCCeEE---------EeecC--ccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc
Q 009569 367 WFLDGGGIFAGMT-DKSICLWDLDGRELE---------SWKGQ--KTLRISDMAITDDGKRIISICREAAILLLDREANF 434 (532)
Q Consensus 367 ~~~~~~~l~~~~~-dg~i~iwd~~~~~~~---------~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~ 434 (532)
++.|...|++++. |+.|++||++..... .+..+ ....+.++..+..|.++++.+.|+.|+.||+.+..
T Consensus 225 ~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s 304 (720)
T KOG0321|consen 225 LFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLS 304 (720)
T ss_pred EEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccC
Confidence 6778899999887 999999999853211 11111 12257788888889999999999999999998765
Q ss_pred e----eeeecC--CceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCC
Q 009569 435 E----RWIEEE--EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED 508 (532)
Q Consensus 435 ~----~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~d 508 (532)
. .+.++. .--..-..+||+.++++|+.|...++|.+.+.......+.+|...++.++++. ++... ++++++|
T Consensus 305 ~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p-S~~t~-v~TcSdD 382 (720)
T KOG0321|consen 305 ISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP-SATTP-VATCSDD 382 (720)
T ss_pred cCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc-ccCCC-ceeeccC
Confidence 1 111111 11223357899999999999999999999998788888999999888877776 66665 4556999
Q ss_pred CcEEEEeCCCCCc
Q 009569 509 SQVNIFLSFSPFA 521 (532)
Q Consensus 509 g~i~iw~~~~~~~ 521 (532)
..++||++..+..
T Consensus 383 ~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 383 FRVKIWRLSNGLE 395 (720)
T ss_pred cceEEEeccCchh
Confidence 9999999977643
No 114
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=4.9e-21 Score=186.41 Aligned_cols=264 Identities=13% Similarity=0.110 Sum_probs=190.5
Q ss_pred cccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEE-EEEeCCCeEEEEEeecCCeeEEEEEeecCC
Q 009569 239 FHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYL-ASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317 (532)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~l-as~s~dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (532)
++...++.+.+|+..+ .+++..+..|. .+.+++|+|+|+.+ ++++.++.|++||..++. ....+..+.
T Consensus 5 ~s~~~d~~v~~~d~~t-------~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~---~~~~~~~~~ 73 (300)
T TIGR03866 5 VSNEKDNTISVIDTAT-------LEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGE---VIGTLPSGP 73 (300)
T ss_pred EEecCCCEEEEEECCC-------CceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCc---EEEeccCCC
Confidence 3556677888886543 34566666554 46789999999976 567789999999998653 334444443
Q ss_pred CCeEEEEeCCCCCEEEEe-eCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCC-cEEEEECCCCeEEE
Q 009569 318 KPVFTVSWSPNDHQLLTC-GQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDK-SICLWDLDGRELES 395 (532)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~ 395 (532)
. +..++|+|+++.++++ +.++.|++||+.+++.+..+.. ...+.+++|+|++..++++..++ .+.+||.++.....
T Consensus 74 ~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~ 151 (300)
T TIGR03866 74 D-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD 151 (300)
T ss_pred C-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE
Confidence 3 5678999999877654 5689999999999887777753 33467899999999999988765 56778998766544
Q ss_pred eecCccCceEEEEEeeCCCEEEEEE-CCCeEEEEECCCCc--eeeeec-------CCceeEEEEcCCCCEEEEE-ecCCe
Q 009569 396 WKGQKTLRISDMAITDDGKRIISIC-REAAILLLDREANF--ERWIEE-------EEVITSFSLSKDNKYLLVN-LINQE 464 (532)
Q Consensus 396 ~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~I~iwd~~~~~--~~~~~~-------~~~i~~~~~sp~~~~l~~~-~~dg~ 464 (532)
...... .+..++|+|+++.+++++ .++.|++||+.+.+ ..+..+ ......++|+|++++++++ ..++.
T Consensus 152 ~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~ 230 (300)
T TIGR03866 152 NVLVDQ-RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR 230 (300)
T ss_pred EEEcCC-CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCe
Confidence 332222 567899999999886554 68999999999876 211111 1124568899999986554 45678
Q ss_pred EEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEE-eCCCcEEEEeCCCCCc
Q 009569 465 IHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG-SEDSQVNIFLSFSPFA 521 (532)
Q Consensus 465 i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sg-s~dg~i~iw~~~~~~~ 521 (532)
+.+||+.+. +.+..+.. ...+ ..+.| +|+|++|+++ +.+|.|.+||+.+++.
T Consensus 231 i~v~d~~~~-~~~~~~~~-~~~~--~~~~~-~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 231 VAVVDAKTY-EVLDYLLV-GQRV--WQLAF-TPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred EEEEECCCC-cEEEEEEe-CCCc--ceEEE-CCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 999999877 55554432 2232 33556 9999999876 4699999999999875
No 115
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=9.4e-23 Score=192.05 Aligned_cols=217 Identities=18% Similarity=0.251 Sum_probs=184.7
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECC---
Q 009569 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN--- 347 (532)
Q Consensus 271 h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~--- 347 (532)
-.++|.|++-+|+|.+|+.|+-.|.+++|.+.+| ..+..+..|-..|+++.|+.||.+|+||+.||.|.+|.+.
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG---~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSG---ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccc---cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec
Confidence 3578999999999999999999999999999988 4566778999999999999999999999999999999873
Q ss_pred ------CCcEEEEeeccCCceEEEEEeeC--CCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEE
Q 009569 348 ------SGECLHVYEKTGVGLISCGWFLD--GGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISI 419 (532)
Q Consensus 348 ------~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 419 (532)
+-++.+.|..|.-+|+++...+. ..++++++.|.++++||+..+.+........ .+.+++.+|-+..+++|
T Consensus 157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~-si~av~lDpae~~~yiG 235 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS-SIKAVALDPAERVVYIG 235 (476)
T ss_pred ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC-cceeEEEcccccEEEec
Confidence 34567889999999999988764 4679999999999999999877655554444 79999999999999999
Q ss_pred ECCCeEEEEECCCCc------------------eeeeecCC--ceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeE
Q 009569 420 CREAAILLLDREANF------------------ERWIEEEE--VITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSR 479 (532)
Q Consensus 420 ~~dg~I~iwd~~~~~------------------~~~~~~~~--~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 479 (532)
+.+|.|.+.++.+.. ..+.+|.. +|+|++++-||..|++|+.||.+.|||+.+. +++++
T Consensus 236 t~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~-Q~iRt 314 (476)
T KOG0646|consen 236 TEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK-QCIRT 314 (476)
T ss_pred CCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH-HHHHH
Confidence 999999998875422 33456776 9999999999999999999999999999988 88887
Q ss_pred EeccccceEEEEE
Q 009569 480 YKGHKRARFVIRS 492 (532)
Q Consensus 480 ~~~~~~~~~~i~~ 492 (532)
+....++++-+.+
T Consensus 315 l~~~kgpVtnL~i 327 (476)
T KOG0646|consen 315 LQTSKGPVTNLQI 327 (476)
T ss_pred HhhhccccceeEe
Confidence 7655555444444
No 116
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.1e-21 Score=176.07 Aligned_cols=240 Identities=20% Similarity=0.265 Sum_probs=189.2
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCc
Q 009569 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (532)
Q Consensus 271 h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 350 (532)
-.+.|.++.|+|.+..|+.++.||++++|++... .....-.|..++.+++|.+ ...+++|+.||.|+.+|+.++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~----~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN----SLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccch----hhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCc
Confidence 3578999999999999999999999999999854 2222335899999999986 5688999999999999999887
Q ss_pred EEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEEC
Q 009569 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDR 430 (532)
Q Consensus 351 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~ 430 (532)
.. .+..|..++.|+.+++....+++|+.|++|++||.++.......... ..|.++... |+.|++|+.+..|.+||+
T Consensus 87 ~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v~--g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 87 ED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDVS--GNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred ce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-ceEEEEecc--CCEEEEeecCceEEEEEc
Confidence 54 45568999999999998889999999999999999874433333222 278888775 679999999999999999
Q ss_pred CCCce----eeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCC---CcceeEEecccc------ceEEE-EEccCC
Q 009569 431 EANFE----RWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD---PKLVSRYKGHKR------ARFVI-RSCFGG 496 (532)
Q Consensus 431 ~~~~~----~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~------~~~~i-~~~~~s 496 (532)
++... .-...+..+.|+++-|++.=.++++-||.|.+=.+... ...-..|+.|.. -++.+ .+.| +
T Consensus 163 Rn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F-h 241 (323)
T KOG1036|consen 163 RNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF-H 241 (323)
T ss_pred ccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe-c
Confidence 98772 22345667999999998888999999999877655443 122334566642 22333 3455 8
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCC
Q 009569 497 FEQAFIASGSEDSQVNIFLSFSPF 520 (532)
Q Consensus 497 ~d~~~l~sgs~dg~i~iw~~~~~~ 520 (532)
|-...++||+.||.|.+||..+.+
T Consensus 242 p~~~tfaTgGsDG~V~~Wd~~~rK 265 (323)
T KOG1036|consen 242 PIHGTFATGGSDGIVNIWDLFNRK 265 (323)
T ss_pred cccceEEecCCCceEEEccCcchh
Confidence 888999999999999999998854
No 117
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.5e-22 Score=198.90 Aligned_cols=224 Identities=20% Similarity=0.354 Sum_probs=189.4
Q ss_pred ccccCCCCCceeeccCCccCCCCCcceeEEccc-ccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecC
Q 009569 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEA-HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316 (532)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h 316 (532)
+..+..++.+.+|+... .+.+..+.+ |...|-+++|+ +..+.+|+.|+.|..+|++..... ...+.+|
T Consensus 232 LavG~~~g~v~iwD~~~-------~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~--~~~~~~H 300 (484)
T KOG0305|consen 232 LAVGTSDGTVQIWDVKE-------QKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV--VSTLQGH 300 (484)
T ss_pred EEEeecCCeEEEEehhh-------ccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh--hhhhhcc
Confidence 33455566777776544 344556666 99999999998 678999999999999999965432 2248899
Q ss_pred CCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEee-CCCeEEEEe--CCCcEEEEECCCCeE
Q 009569 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFL-DGGGIFAGM--TDKSICLWDLDGREL 393 (532)
Q Consensus 317 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~--~dg~i~iwd~~~~~~ 393 (532)
...|..+.|++|+.++|+|+.|+.+.|||.....++..+..|.+.|.+++|+| ....||+|+ .|+.|++||..++..
T Consensus 301 ~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~ 380 (484)
T KOG0305|consen 301 RQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR 380 (484)
T ss_pred cceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE
Confidence 99999999999999999999999999999988889999999999999999999 566778754 799999999988776
Q ss_pred EEeecCccCceEEEEEeeCCCEEEEEE--CCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEe
Q 009569 394 ESWKGQKTLRISDMAITDDGKRIISIC--REAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (532)
Q Consensus 394 ~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd 469 (532)
........ .|..+.|++..+-|+++. .++.|.||+..+.. ..+.+|...|..++++|||..+++|+.|.++++|+
T Consensus 381 i~~vdtgs-QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 381 IDSVDTGS-QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred ecccccCC-ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 65554443 899999999987777643 67789999998876 77889999999999999999999999999999999
Q ss_pred cCCC
Q 009569 470 IESD 473 (532)
Q Consensus 470 ~~~~ 473 (532)
+-..
T Consensus 460 ~f~~ 463 (484)
T KOG0305|consen 460 LFDE 463 (484)
T ss_pred ccCC
Confidence 8764
No 118
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=6.3e-23 Score=194.27 Aligned_cols=245 Identities=16% Similarity=0.231 Sum_probs=201.3
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeec--CCCCeEEEEeCCCCCEEEEeeCCCcEEEEECC
Q 009569 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG--HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN 347 (532)
Q Consensus 270 ~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 347 (532)
.|..-|.++.+|...+++.||+. |.|+|||+...+...++..+.. ..+.|.++...|||+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 48888999999999999999975 6899999985443334444433 35678999999999999999999999999997
Q ss_pred CCcEE--EEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeE
Q 009569 348 SGECL--HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAI 425 (532)
Q Consensus 348 ~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I 425 (532)
..... ..+....-.+.+++.+||.+..++++.||.|.|||+.+..+...+..|...+.||.+++||..|.+|+-|++|
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv 575 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV 575 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence 65443 2333334567789999999999999999999999999988888777787899999999999999999999999
Q ss_pred EEEECCCCc-eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEE
Q 009569 426 LLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIAS 504 (532)
Q Consensus 426 ~iwd~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~s 504 (532)
+.||++.+. .........|.++..+|++.+|++|-.++.+.|...... . ++.-|.....++.+.| .+.|+++++
T Consensus 576 RcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp--~--kyqlhlheScVLSlKF-a~cGkwfvS 650 (705)
T KOG0639|consen 576 RCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP--E--KYQLHLHESCVLSLKF-AYCGKWFVS 650 (705)
T ss_pred eehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCc--c--ceeecccccEEEEEEe-cccCceeee
Confidence 999999887 444455678999999999999999999999888886654 2 3333433344666777 889999999
Q ss_pred EeCCCcEEEEeCCCCC
Q 009569 505 GSEDSQVNIFLSFSPF 520 (532)
Q Consensus 505 gs~dg~i~iw~~~~~~ 520 (532)
.+.|+-+..|....|.
T Consensus 651 tGkDnlLnawrtPyGa 666 (705)
T KOG0639|consen 651 TGKDNLLNAWRTPYGA 666 (705)
T ss_pred cCchhhhhhccCcccc
Confidence 9999999999987653
No 119
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=4.8e-24 Score=210.17 Aligned_cols=236 Identities=18% Similarity=0.329 Sum_probs=205.5
Q ss_pred EEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEE
Q 009569 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (532)
Q Consensus 266 ~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 345 (532)
+.+-.|...|.|+..-..++.+++|+.|..+-+|.+... ..+..+.+|..+|.++.|+++..+|++|+.+|+|++||
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp---~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP---NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCC---chhheeeccCCcceeeecCcchhhhcccccCCceeeee
Confidence 345569999999998778899999999999999998643 34456899999999999999999999999999999999
Q ss_pred CCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCC-CeEEEeecCccCceEEEEEeeCCCEEEEEECCCe
Q 009569 346 VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMAITDDGKRIISICREAA 424 (532)
Q Consensus 346 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 424 (532)
++.++.++++.+|...+.++.|+|-+.+++.|+.|+.+++||++. +....+.. |...|..+.|+|+|++++.++.|..
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s-~~~vv~~l~lsP~Gr~v~~g~ed~t 177 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS-HTRVVDVLRLSPDGRWVASGGEDNT 177 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC-CcceeEEEeecCCCceeeccCCcce
Confidence 999999999999999999999999999999999999999999984 55555554 6668999999999999999999999
Q ss_pred EEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEE
Q 009569 425 ILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFI 502 (532)
Q Consensus 425 I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l 502 (532)
+++||...++ ..+..|...+.++.|+|..-+++.|+.|+++++||+++. +.+......... +....| +|++..+
T Consensus 178 vki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf-e~I~s~~~~~~~--v~~~~f-n~~~~~~ 253 (825)
T KOG0267|consen 178 VKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF-EVISSGKPETDG--VRSLAF-NPDGKIV 253 (825)
T ss_pred eeeecccccccccccccccccccccccCchhhhhccCCCCceeeeecccee-EEeeccCCccCC--ceeeee-cCCceee
Confidence 9999998888 667789999999999999999999999999999999987 666666655444 333556 9999999
Q ss_pred EEEeCCC
Q 009569 503 ASGSEDS 509 (532)
Q Consensus 503 ~sgs~dg 509 (532)
++|..+.
T Consensus 254 ~~G~q~s 260 (825)
T KOG0267|consen 254 LSGEQIS 260 (825)
T ss_pred ecCchhh
Confidence 8886543
No 120
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.4e-21 Score=175.32 Aligned_cols=265 Identities=11% Similarity=0.172 Sum_probs=201.0
Q ss_pred ccccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeec
Q 009569 236 SCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG 315 (532)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~ 315 (532)
..++..+.|+.+.+|+-.. ..+...-.|..++.+++|.+ ...+++|+.||.|+.+|+.++.. ..+..
T Consensus 26 ~~LLvssWDgslrlYdv~~--------~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~----~~igt 92 (323)
T KOG1036|consen 26 SDLLVSSWDGSLRLYDVPA--------NSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE----DQIGT 92 (323)
T ss_pred CcEEEEeccCcEEEEeccc--------hhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc----eeecc
Confidence 3444556677777765443 23333335999999999987 45689999999999999997633 45667
Q ss_pred CCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEE
Q 009569 316 HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES 395 (532)
Q Consensus 316 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 395 (532)
|..+|.++.+++-...+++|+.|++|++||.+.......+.. ...|.++.. .++.|++|+.+..+.+||+++.....
T Consensus 93 h~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~ 169 (323)
T KOG1036|consen 93 HDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPF 169 (323)
T ss_pred CCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecCceEEEEEcccccchh
Confidence 999999999999888999999999999999998666666653 337887776 47899999999999999998743322
Q ss_pred e--ecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc------eeeeec---------CCceeEEEEcCCCCEEEE
Q 009569 396 W--KGQKTLRISDMAITDDGKRIISICREAAILLLDREANF------ERWIEE---------EEVITSFSLSKDNKYLLV 458 (532)
Q Consensus 396 ~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~------~~~~~~---------~~~i~~~~~sp~~~~l~~ 458 (532)
. ...-...+.++++-|++.-+++++-||+|.+=.++... ..+..| -.+|++|+|+|-...+++
T Consensus 170 q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaT 249 (323)
T KOG1036|consen 170 QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFAT 249 (323)
T ss_pred hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEe
Confidence 1 11112378999999998889999999999887666542 233333 247999999999999999
Q ss_pred EecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeC-----CC-------cEEEEeCCCCC
Q 009569 459 NLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE-----DS-------QVNIFLSFSPF 520 (532)
Q Consensus 459 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~-----dg-------~i~iw~~~~~~ 520 (532)
|+.||.|.+||+.+. +.+..+......+.. +.| +.+|..||+++. .. .|.|.++.+.+
T Consensus 250 gGsDG~V~~Wd~~~r-Krl~q~~~~~~SI~s--lsf-s~dG~~LAia~sy~ye~~~~~~~~~~~i~I~~l~d~e 319 (323)
T KOG1036|consen 250 GGSDGIVNIWDLFNR-KRLKQLAKYETSISS--LSF-SMDGSLLAIASSYQYERADTPTHERNAIFIRDLTDYE 319 (323)
T ss_pred cCCCceEEEccCcch-hhhhhccCCCCceEE--EEe-ccCCCeEEEEechhhhcCCCCCCCCCceEEEeccccc
Confidence 999999999999988 777777766555433 555 889999999874 22 26676666543
No 121
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.6e-22 Score=186.84 Aligned_cols=232 Identities=20% Similarity=0.254 Sum_probs=187.4
Q ss_pred CEEEEEe-CCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceE
Q 009569 285 KYLASSS-KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLI 363 (532)
Q Consensus 285 ~~las~s-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 363 (532)
.|++++. .-..+.+|.+....... ...--.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-..|+
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~---q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~IT 127 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVV---QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSIT 127 (476)
T ss_pred hheeeecccCccccccccCchhhhh---hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhcccee
Confidence 5666664 34578899987432221 2233467899999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCeEEEEeCCCcEEEEECCC---------CeEEEeecCccCceEEEEEeeC--CCEEEEEECCCeEEEEECCC
Q 009569 364 SCGWFLDGGGIFAGMTDKSICLWDLDG---------RELESWKGQKTLRISDMAITDD--GKRIISICREAAILLLDREA 432 (532)
Q Consensus 364 ~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~I~iwd~~~ 432 (532)
++.|+.||.+|++|+.||.|.+|++.. .........|.-+|+++...+. ..++++++.|.++++||+..
T Consensus 128 cL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~ 207 (476)
T KOG0646|consen 128 CLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL 207 (476)
T ss_pred EEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc
Confidence 999999999999999999999998731 2233344455569999998875 35899999999999999999
Q ss_pred Cc-eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCC---------------cceeEEeccccceEEEEEccCC
Q 009569 433 NF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP---------------KLVSRYKGHKRARFVIRSCFGG 496 (532)
Q Consensus 433 ~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~---------------~~~~~~~~~~~~~~~i~~~~~s 496 (532)
+. .........+.+++++|-++.+++|+.+|.|.+.++.... ..+..+.||.....+.++.. +
T Consensus 208 g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLai-s 286 (476)
T KOG0646|consen 208 GVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAI-S 286 (476)
T ss_pred ceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEE-e
Confidence 98 5666778899999999999999999999999998875431 23456778888222333344 7
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCC
Q 009569 497 FEQAFIASGSEDSQVNIFLSFSPF 520 (532)
Q Consensus 497 ~d~~~l~sgs~dg~i~iw~~~~~~ 520 (532)
.||.+|++|++||+|+|||+.+..
T Consensus 287 ~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 287 TDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred cCccEEEeeCCCCCEEEEecchHH
Confidence 799999999999999999998754
No 122
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=6.4e-22 Score=186.02 Aligned_cols=314 Identities=14% Similarity=0.202 Sum_probs=231.1
Q ss_pred ccHHHHHHHHHHHHhcCC-CCccCCcchHHHH-HHHHHH------------h-cccccccccCCCCCceeeccCCccCCC
Q 009569 195 EDEKSRSKFLAKLQKLLP-ASVVIPEKRLEHL-VEKALD------------V-QRDSCLFHNTSDSDFSLYSDHQCGRNR 259 (532)
Q Consensus 195 ~~~~~r~~l~~~l~~~~~-~~~~~p~~rl~~l-~~~~~~------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (532)
+.+.+-..++...-.++. ....+|+.+|... ++.+-. + +....++.++.++.+++|.-. .
T Consensus 170 e~e~s~d~lL~tt~~yi~s~s~~Lp~~tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvD-----G 244 (514)
T KOG2055|consen 170 EEEGSLDDLLKTTVGYIDSRSKLLPPGTLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVD-----G 244 (514)
T ss_pred cccccHHHHHHhhhcccccccccCCCceeeeEeecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEec-----C
Confidence 333444566666666665 5566777766542 111111 0 111122344455666666422 2
Q ss_pred CCcceeEEcccccccEEEEEEccCCC-EEEEEeCCCeEEEEEeecCCeeEEEEEeecCC-CCeEEEEeCCCCCEEEEeeC
Q 009569 260 IPSQTLQILEAHSDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR-KPVFTVSWSPNDHQLLTCGQ 337 (532)
Q Consensus 260 ~~~~~~~~l~~h~~~V~~v~~s~~g~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~ 337 (532)
-....++.+.--..+|.+++|.|+|+ .+++++.....+.||+.+.+ +..+....++. ..+.....||++++|+..+.
T Consensus 245 k~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak-~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~ 323 (514)
T KOG2055|consen 245 KVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK-VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN 323 (514)
T ss_pred ccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc-cccccCCCCcccchhheeEecCCCCeEEEccc
Confidence 22346666766778999999999999 88999999999999998653 34445555554 35677889999999999999
Q ss_pred CCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeE-EEeecCccCceEEEEEeeCCCEE
Q 009569 338 EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL-ESWKGQKTLRISDMAITDDGKRI 416 (532)
Q Consensus 338 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l 416 (532)
.|.|.+....+++.+..++ -.+.|..++|+.+++.|++++.+|.|++||++...+ ..+.....-.-++++.++++.++
T Consensus 324 ~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~yl 402 (514)
T KOG2055|consen 324 NGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYL 402 (514)
T ss_pred CceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceE
Confidence 9999999999999998887 466799999999999999999999999999987544 44444443345677888999999
Q ss_pred EEEECCCeEEEEECCCCc--------eeeeecCCceeEEEEcCCCCEEEEEec--CCeEEEEecCCCCcceeEEeccccc
Q 009569 417 ISICREAAILLLDREANF--------ERWIEEEEVITSFSLSKDNKYLLVNLI--NQEIHLWSIESDPKLVSRYKGHKRA 486 (532)
Q Consensus 417 ~~~~~dg~I~iwd~~~~~--------~~~~~~~~~i~~~~~sp~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~ 486 (532)
|+|+..|.|.|||..+.. ..+......|+++.|+||++.|+.++. +..+++-.+.+. .....+......
T Consensus 403 A~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~-TVFsNfP~~n~~ 481 (514)
T KOG2055|consen 403 ATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSC-TVFSNFPTSNTK 481 (514)
T ss_pred EeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccce-eeeccCCCCCCc
Confidence 999999999999976533 233345678999999999999998875 668999999887 555556555444
Q ss_pred eE-EEEEccCCCCCcEEEEEeCCCcEEEEeCC
Q 009569 487 RF-VIRSCFGGFEQAFIASGSEDSQVNIFLSF 517 (532)
Q Consensus 487 ~~-~i~~~~~s~d~~~l~sgs~dg~i~iw~~~ 517 (532)
+. +.++.| +|.+.++|.|.++|+|.+|.+.
T Consensus 482 vg~vtc~aF-SP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 482 VGHVTCMAF-SPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ccceEEEEe-cCCCceEEeecCCCceeeEeec
Confidence 33 344555 9999999999999999999875
No 123
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=3.6e-21 Score=192.88 Aligned_cols=268 Identities=13% Similarity=0.195 Sum_probs=222.3
Q ss_pred ccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCC
Q 009569 240 HNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319 (532)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 319 (532)
.+...+.+.+|+-.+ ++.+.+++++.+.|+++.-+|-=..+|.|..+|+|.+++++.+ +.+.+++...+.
T Consensus 177 vGs~~G~lql~Nvrt-------~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d---kil~sFk~d~g~ 246 (910)
T KOG1539|consen 177 VGSSQGRLQLWNVRT-------GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD---KILMSFKQDWGR 246 (910)
T ss_pred EeecCCcEEEEEecc-------CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccC---cEEEEEEccccc
Confidence 344555666665443 6889999999999999999998889999999999999999987 455677655699
Q ss_pred eEEEEeCCCCCE-EEEeeCCCcEEEEECCCCcEEE---------------------------------------------
Q 009569 320 VFTVSWSPNDHQ-LLTCGQEEAIRRWDVNSGECLH--------------------------------------------- 353 (532)
Q Consensus 320 v~~l~~s~~~~~-l~s~~~dg~i~iwd~~~~~~~~--------------------------------------------- 353 (532)
|+.++|..||+. +++++..|.+.+||++..+.+.
T Consensus 247 VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~ 326 (910)
T KOG1539|consen 247 VTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRL 326 (910)
T ss_pred eeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchh
Confidence 999999999974 5566667999999986432111
Q ss_pred --------------------------------------------------------------------------------
Q 009569 354 -------------------------------------------------------------------------------- 353 (532)
Q Consensus 354 -------------------------------------------------------------------------------- 353 (532)
T Consensus 327 LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~ 406 (910)
T KOG1539|consen 327 LRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENA 406 (910)
T ss_pred eeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccc
Confidence
Q ss_pred -------------------------------Ee-----eccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEee
Q 009569 354 -------------------------------VY-----EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK 397 (532)
Q Consensus 354 -------------------------------~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 397 (532)
.+ +.....+++++.++.|++.+.|+..|.|-+|++.++-.+.-.
T Consensus 407 RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf 486 (910)
T KOG1539|consen 407 REKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSF 486 (910)
T ss_pred hhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccc
Confidence 00 011255778888899999999999999999999987766555
Q ss_pred ---cCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc-eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 009569 398 ---GQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (532)
Q Consensus 398 ---~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~ 473 (532)
..|..+|++++.+.-++.+++++.+|.+.+||..+.. .........++++..+.....++++..|-.|+++|+.+.
T Consensus 487 ~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~ 566 (910)
T KOG1539|consen 487 GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR 566 (910)
T ss_pred ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhh
Confidence 3666799999999999999999999999999999887 445556778899999999999999999999999999998
Q ss_pred CcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCCc
Q 009569 474 PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPFA 521 (532)
Q Consensus 474 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~~ 521 (532)
+.++.|.||...++ ..+| ||||++|++++.|++|++||+.++..
T Consensus 567 -kvvR~f~gh~nrit--d~~F-S~DgrWlisasmD~tIr~wDlpt~~l 610 (910)
T KOG1539|consen 567 -KVVREFWGHGNRIT--DMTF-SPDGRWLISASMDSTIRTWDLPTGTL 610 (910)
T ss_pred -hhhHHhhcccccee--eeEe-CCCCcEEEEeecCCcEEEEeccCcce
Confidence 89999999999854 4777 99999999999999999999998754
No 124
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=9.7e-21 Score=186.01 Aligned_cols=243 Identities=14% Similarity=0.220 Sum_probs=203.3
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecC-CCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCC
Q 009569 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH-RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (532)
Q Consensus 271 h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 349 (532)
-..+|.+++|+.+.+.||.+-.||.|.+|++..+ +-....+.++ +..|.+++|+ ++..|++.+.+|.|.-||+.++
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~--w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN--WFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCC--ceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccC
Confidence 4578999999999999999999999999999854 3444555554 4579999999 4667889999999999999999
Q ss_pred cEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEE--eecCccCceEEEEEeeCCCEEEEEECCCeEEE
Q 009569 350 ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES--WKGQKTLRISDMAITDDGKRIISICREAAILL 427 (532)
Q Consensus 350 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~i 427 (532)
+....+....+.|++++.+|.+..+++|+.||.++.++...+.+.. ......++|.+++|+|++..++.|+.||.|++
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI 180 (691)
T ss_pred ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence 9999999999999999999999999999999988888887666533 23344468999999999999999999999999
Q ss_pred EECCCCceee------ee----cCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCC
Q 009569 428 LDREANFERW------IE----EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF 497 (532)
Q Consensus 428 wd~~~~~~~~------~~----~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 497 (532)
||..++.... .. ...-|.++.|-.++ .|++|+..|+|.+||...+ .+++.+..|...+..+.+ .+
T Consensus 181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g-TLiqS~~~h~adVl~Lav---~~ 255 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG-TLIQSHSCHDADVLALAV---AD 255 (691)
T ss_pred EEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc-chhhhhhhhhcceeEEEE---cC
Confidence 9999887222 11 22346777777554 7899999999999999998 899999999998666554 77
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCc
Q 009569 498 EQAFIASGSEDSQVNIFLSFSPFA 521 (532)
Q Consensus 498 d~~~l~sgs~dg~i~iw~~~~~~~ 521 (532)
++..+++++.|++|.-+...+...
T Consensus 256 ~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 256 NEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred CCCeEEEccCCCceEEEEecCCcc
Confidence 889999999999999998887643
No 125
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=4.9e-22 Score=192.14 Aligned_cols=255 Identities=17% Similarity=0.252 Sum_probs=207.0
Q ss_pred CCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeE-----------------------------
Q 009569 258 NRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVS----------------------------- 308 (532)
Q Consensus 258 ~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~----------------------------- 308 (532)
..+|..+-..+.||++.|.|+...|.|.+||+|+.||+|+||.+.++.++.
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC 465 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc
Confidence 567788888999999999999999999999999999999999998632110
Q ss_pred -----------------------------------------------EEEEeecCCCCeEEEEeCCCCCEEEEeeCC---
Q 009569 309 -----------------------------------------------LKHRLSGHRKPVFTVSWSPNDHQLLTCGQE--- 338 (532)
Q Consensus 309 -----------------------------------------------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d--- 338 (532)
-+.....|...|..+.|+..|.||++...+
T Consensus 466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~ 545 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGN 545 (733)
T ss_pred eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCc
Confidence 001122366778888899999999887664
Q ss_pred CcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEE
Q 009569 339 EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIIS 418 (532)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 418 (532)
..|.|+++........|+...+.|.++.|+|...++++++. ..|+|||+..+.+..........|..++.+|.|..|+.
T Consensus 546 ~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred ceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 46888888777666677777788999999999999998876 67999999765544333333448999999999999999
Q ss_pred EECCCeEEEEECCCCc---eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecC------CC--CcceeEEeccccc-
Q 009569 419 ICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE------SD--PKLVSRYKGHKRA- 486 (532)
Q Consensus 419 ~~~dg~I~iwd~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~------~~--~~~~~~~~~~~~~- 486 (532)
++.|+.+..||+.-.. .++..|...+++++|++.-.++++|+.||++.|+.-. .+ --++..+++|...
T Consensus 625 gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~ 704 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTN 704 (733)
T ss_pred ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeec
Confidence 9999999999998764 6777899999999999999999999999999998532 11 1245677888654
Q ss_pred -eEEEEEccCCCCCcEEEEEeCCCcEEEE
Q 009569 487 -RFVIRSCFGGFEQAFIASGSEDSQVNIF 514 (532)
Q Consensus 487 -~~~i~~~~~s~d~~~l~sgs~dg~i~iw 514 (532)
..++.++| +|...+|++++.||+|++|
T Consensus 705 ~~gVLd~~w-HP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 705 DLGVLDTIW-HPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ccceEeecc-cCCCceEEecCCCceEEee
Confidence 45677888 9999999999999999998
No 126
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=8.3e-23 Score=203.02 Aligned_cols=232 Identities=13% Similarity=0.275 Sum_probs=189.6
Q ss_pred cccccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEcc-CCCEEEEEeCCCeEEEEEeecCCeeEEEEEe
Q 009569 235 DSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRL 313 (532)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~-~g~~las~s~dg~i~iwd~~~~~~~~~~~~~ 313 (532)
.+++++.+..+.+.+|+.... ...+.+..+..|...|+++.|++ ...+|++||.||+|++||++.. ....++
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~----~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~---~S~~t~ 172 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKS----IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK---KSKSTF 172 (839)
T ss_pred hhhheeecCCCcEEEEecCcc----ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc---cccccc
Confidence 457788899999999987653 23566778999999999999999 5678899999999999999966 344667
Q ss_pred ecCCCCeEEEEeCC-CCCEEEEeeCCCcEEEEECCCC-cEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCC
Q 009569 314 SGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNSG-ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR 391 (532)
Q Consensus 314 ~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 391 (532)
.+....|.++.|+| .+.+++++...|.+++||++.. ++...+..|.++|.|+.|+|++.+|++|+.|+.|+|||..+.
T Consensus 173 ~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 173 RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDS 252 (839)
T ss_pred cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCC
Confidence 77888999999999 5789999999999999999754 567788899999999999999999999999999999999854
Q ss_pred eEEEeec-CccCceEEEEEeeCCC-EEEEEE--CCCeEEEEECCCCc---eeeeecCCceeEEEEcC-CCCEEEEEecCC
Q 009569 392 ELESWKG-QKTLRISDMAITDDGK-RIISIC--REAAILLLDREANF---ERWIEEEEVITSFSLSK-DNKYLLVNLINQ 463 (532)
Q Consensus 392 ~~~~~~~-~~~~~v~~~~~s~~~~-~l~~~~--~dg~I~iwd~~~~~---~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg 463 (532)
....... ....+|.+++|-|+.. .|++++ .|..|+|||++..- ..+..|...++.++|.. |...+.+++.||
T Consensus 253 ~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~ 332 (839)
T KOG0269|consen 253 RAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDG 332 (839)
T ss_pred CccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCcc
Confidence 3322221 2233899999999765 455554 67889999998866 77788999999999976 456788888888
Q ss_pred eEEEEecCCC
Q 009569 464 EIHLWSIESD 473 (532)
Q Consensus 464 ~i~iwd~~~~ 473 (532)
.|..-.+++.
T Consensus 333 tv~qh~~kna 342 (839)
T KOG0269|consen 333 TVLQHLFKNA 342 (839)
T ss_pred HHHHhhhhcc
Confidence 8766555444
No 127
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=1.3e-20 Score=178.94 Aligned_cols=244 Identities=16% Similarity=0.241 Sum_probs=192.8
Q ss_pred eeEEccccc-ccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEE
Q 009569 264 TLQILEAHS-DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (532)
Q Consensus 264 ~~~~l~~h~-~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 342 (532)
....++.+. .-|.|++|.++|. ++||..+|.|.||+..+. +..+....|.+.|.+++.-.+|.+|- |+.|..|.
T Consensus 237 ~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~---~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~ 311 (626)
T KOG2106|consen 237 RQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTN---RISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKII 311 (626)
T ss_pred EeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCc---eEEeEeeecCCceEEEEEecCccEee-cCccceEE
Confidence 334455443 6799999999997 789999999999999644 34444449999999999999986654 99999999
Q ss_pred EEECCCCc----------------------------------------EEEEeeccCCceEEEEEeeCCCeEEEEeCCCc
Q 009569 343 RWDVNSGE----------------------------------------CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS 382 (532)
Q Consensus 343 iwd~~~~~----------------------------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 382 (532)
.||-.-.+ ......+|....+.++.+|+.+.+++++.|+.
T Consensus 312 ~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~ 391 (626)
T KOG2106|consen 312 LWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKH 391 (626)
T ss_pred eccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcce
Confidence 99832100 00123367778889999999999999999999
Q ss_pred EEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc-eeeeecCCceeEEEEcCCCCEEEEEec
Q 009569 383 ICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLI 461 (532)
Q Consensus 383 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~ 461 (532)
+++|+ +.+.. |...-..++.++.|+|.| .++.|+..|...+.|.++.. ........++++++|+|+|.+|++|+.
T Consensus 392 v~lW~-~~k~~--wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~ 467 (626)
T KOG2106|consen 392 VRLWN-DHKLE--WTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSH 467 (626)
T ss_pred EEEcc-CCcee--EEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecC
Confidence 99999 33322 222223379999999999 99999999999999999966 444445889999999999999999999
Q ss_pred CCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 462 NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 462 dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
|+.|+||-+..++........+.. .++..+.| ++|++++.+-+-|-.|..|....
T Consensus 468 d~~iyiy~Vs~~g~~y~r~~k~~g-s~ithLDw-S~Ds~~~~~~S~d~eiLyW~~~~ 522 (626)
T KOG2106|consen 468 DNHIYIYRVSANGRKYSRVGKCSG-SPITHLDW-SSDSQFLVSNSGDYEILYWKPSE 522 (626)
T ss_pred CCeEEEEEECCCCcEEEEeeeecC-ceeEEeee-cCCCceEEeccCceEEEEEcccc
Confidence 999999999877566666655544 45566777 99999999999999999995443
No 128
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=1.9e-21 Score=173.02 Aligned_cols=274 Identities=15% Similarity=0.212 Sum_probs=205.5
Q ss_pred cccccccCCCCCceeeccCCccCCC---CCc--ce---eEEcccccccEEEEEEcc-CCCEEEEEeCCCeEEEEEeecCC
Q 009569 235 DSCLFHNTSDSDFSLYSDHQCGRNR---IPS--QT---LQILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDG 305 (532)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~---~~~l~~h~~~V~~v~~s~-~g~~las~s~dg~i~iwd~~~~~ 305 (532)
...+++++.++.+.+|+........ +.. ++ .+.-.+|.-.|.++.|-| |.-.+.+++.|.+++|||.++-.
T Consensus 56 grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ 135 (397)
T KOG4283|consen 56 GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ 135 (397)
T ss_pred ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce
Confidence 4466789999999999866543211 111 12 122347888999999999 66788899999999999998642
Q ss_pred eeEEEEEeecCCCCeEEEEeCCC---CCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCe-EEEEeCCC
Q 009569 306 QVSLKHRLSGHRKPVFTVSWSPN---DHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGG-IFAGMTDK 381 (532)
Q Consensus 306 ~~~~~~~~~~h~~~v~~l~~s~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg 381 (532)
....|+ ..+.|.+-+|||- ..++++|..+-.|++.|+.+|.+-+++.+|...|.++.|+|...+ |++|+.||
T Consensus 136 ---~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg 211 (397)
T KOG4283|consen 136 ---EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADG 211 (397)
T ss_pred ---eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCc
Confidence 223332 4567888888883 457788888889999999999999999999999999999997766 66799999
Q ss_pred cEEEEECCC--CeEEEe-------------ecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCceeeee-----cC
Q 009569 382 SICLWDLDG--RELESW-------------KGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIE-----EE 441 (532)
Q Consensus 382 ~i~iwd~~~--~~~~~~-------------~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~~~~~~-----~~ 441 (532)
.|++||++. +....+ ...+.+.|..++|+.++.++++++.|..+++|+..++...+.. ++
T Consensus 212 ~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n 291 (397)
T KOG4283|consen 212 AIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHN 291 (397)
T ss_pred eEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccccccccccccc
Confidence 999999973 222222 2345568999999999999999999999999999888722221 11
Q ss_pred Cc---eeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCC
Q 009569 442 EV---ITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSF 517 (532)
Q Consensus 442 ~~---i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~ 517 (532)
.. -..+. +-+...++.--.++.+.++++-++ ..++.+..|-.. +.++++-|+=+...+|+.|+.|+.|-+.
T Consensus 292 ~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sg-s~ir~l~~h~k~---i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 292 QTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEG-SFVRRLSTHLKR---INCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred ccccceEEEe-ecccceEEEEecCCeEEEEEccCc-eEEEeeecccce---eeEEeecCchhhhhccccCCcccccccc
Confidence 11 01122 333334444444689999999988 899999999554 5566668888889999999999999873
No 129
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.2e-21 Score=183.61 Aligned_cols=236 Identities=17% Similarity=0.280 Sum_probs=179.4
Q ss_pred CCCEEEEEeCCCeEEEEEeecCCeeEEEEE------------------eecCCCCeEEEEeCCC-CCEEEEeeCCCcEEE
Q 009569 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHR------------------LSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRR 343 (532)
Q Consensus 283 ~g~~las~s~dg~i~iwd~~~~~~~~~~~~------------------~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~i 343 (532)
.|+|+|.|+.|..|.|||+.--..+.+..+ -.+|+..|.+++|+.+ .+.|++||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 367999999999999999863222211111 2368999999999875 468999999999999
Q ss_pred EECCCCcEEEEeeccCCceEEEEEee-CCCeEEEEeCCCcEEEEECCCCe--EEEeecCccCceEEEEEeeCCC-EEEEE
Q 009569 344 WDVNSGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRE--LESWKGQKTLRISDMAITDDGK-RIISI 419 (532)
Q Consensus 344 wd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~-~l~~~ 419 (532)
||+.++++..++..|+..|.++.|+| ....+++|+.|+++.+.|.+... -..|.. .+.|-.++|.|... .++++
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~--~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF--DGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe--ccceEEEEecCCCceeEEEe
Confidence 99999999999999999999999999 56788999999999999998421 223332 23799999999654 67777
Q ss_pred ECCCeEEEEECCCCc---eeeeecCCceeEEEEcCCC-CEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccC
Q 009569 420 CREAAILLLDREANF---ERWIEEEEVITSFSLSKDN-KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495 (532)
Q Consensus 420 ~~dg~I~iwd~~~~~---~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (532)
+.||+|+-+|+++.. .....|..+|.++++++.- .++++++.|+.+++|++... .. .....|.-....+.+...
T Consensus 349 tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~-~~-~~v~~~~~~~~rl~c~~~ 426 (463)
T KOG0270|consen 349 TDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD-SP-KSVKEHSFKLGRLHCFAL 426 (463)
T ss_pred cCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC-CC-cccccccccccceeeccc
Confidence 899999999999874 6777899999999999865 56788899999999999754 22 122223222212222222
Q ss_pred CCCC-cEEEEEeCCCcEEEEeCCCCCce
Q 009569 496 GFEQ-AFIASGSEDSQVNIFLSFSPFAK 522 (532)
Q Consensus 496 s~d~-~~l~sgs~dg~i~iw~~~~~~~~ 522 (532)
.|+- .+++.|+..+.++|||+.+....
T Consensus 427 ~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 427 DPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CCCcceEEEecCccceEEEeecccChhH
Confidence 4443 46778888889999999886543
No 130
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=4.3e-21 Score=170.75 Aligned_cols=206 Identities=17% Similarity=0.261 Sum_probs=170.2
Q ss_pred ccccccEEEEEEcc-CCCEEEEEeCCCeEEEEEeecCCee---------EE---EEEeecCCCCeEEEEeCC-CCCEEEE
Q 009569 269 EAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQV---------SL---KHRLSGHRKPVFTVSWSP-NDHQLLT 334 (532)
Q Consensus 269 ~~h~~~V~~v~~s~-~g~~las~s~dg~i~iwd~~~~~~~---------~~---~~~~~~h~~~v~~l~~s~-~~~~l~s 334 (532)
..|.+.|+++...+ .|+|+++|+.||.|.+||++..... .+ ..--.+|.-.|..+.|-| |.-.+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 35889999999999 8999999999999999999853211 11 111246788999999999 5568888
Q ss_pred eeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeC---CCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEee
Q 009569 335 CGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD---GGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD 411 (532)
Q Consensus 335 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 411 (532)
++.|.++++||+.+.+....|+ -.+.|++-+++|- -.++++|..+-.|++.|+.++........|...|.++.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 9999999999999998888776 4567888889883 44678888899999999999888888778878999999999
Q ss_pred CCCE-EEEEECCCeEEEEECCCCc-----------------eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 009569 412 DGKR-IISICREAAILLLDREANF-----------------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (532)
Q Consensus 412 ~~~~-l~~~~~dg~I~iwd~~~~~-----------------~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~ 473 (532)
...+ |++|+.||.|++||++... ..-..|.+.+.+++|+.++.++++++.|..+++|+..++
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 8775 6788999999999998642 112357788999999999999999999999999999877
Q ss_pred Cc
Q 009569 474 PK 475 (532)
Q Consensus 474 ~~ 475 (532)
..
T Consensus 279 ~n 280 (397)
T KOG4283|consen 279 RN 280 (397)
T ss_pred cc
Confidence 33
No 131
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=1.7e-21 Score=183.05 Aligned_cols=256 Identities=14% Similarity=0.165 Sum_probs=199.8
Q ss_pred ceeEEcccccccEEEEEEccCC--CEEEEEeCCCeEEEEEeecC-CeeEEEEEeecCCCCeEEEEeCCC-CCEEEEeeCC
Q 009569 263 QTLQILEAHSDEVWFLQFSHDG--KYLASSSKDQSAIIWEVKED-GQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQE 338 (532)
Q Consensus 263 ~~~~~l~~h~~~V~~v~~s~~g--~~las~s~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~d 338 (532)
....+.+-|.++|++++|+|.. +++|+|..-|.|-+||+.+. ....-+..+..|..+|.++.|+|. ...+++.+.|
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence 4455677799999999999954 58899999999999999522 222345667889999999999995 4689999999
Q ss_pred CcEEEEECCCCcEEEEeec--cCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCe--EEEeecCccCceEEEEEeeCC-
Q 009569 339 EAIRRWDVNSGECLHVYEK--TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE--LESWKGQKTLRISDMAITDDG- 413 (532)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~- 413 (532)
|+|+.-|++.+..-..+.. ....+.++.|+.+...++.+..=|.+.+||+++.. ...+..+.. .|..++++|..
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k-KI~sv~~NP~~p 335 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK-KITSVALNPVCP 335 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc-ccceeecCCCCc
Confidence 9999999987654333333 45667788888888888888888899999998533 333444444 89999999954
Q ss_pred CEEEEEECCCeEEEEECCCCc------eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecC---CCCcceeEEeccc
Q 009569 414 KRIISICREAAILLLDREANF------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE---SDPKLVSRYKGHK 484 (532)
Q Consensus 414 ~~l~~~~~dg~I~iwd~~~~~------~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~ 484 (532)
.++++++.|++.+|||++... .....|...|.+..|||++-.|++.+.|..|+|||.. ....+..++.-..
T Consensus 336 ~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~ 415 (498)
T KOG4328|consen 336 WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNN 415 (498)
T ss_pred hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccC
Confidence 578999999999999998754 3345789999999999998889999999999999984 2224444443211
Q ss_pred ---cceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCC
Q 009569 485 ---RARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPF 520 (532)
Q Consensus 485 ---~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~ 520 (532)
...+.+...| .|+..+|++|-.-..|-|+|-+.+.
T Consensus 416 ~t~RwlT~fKA~W-~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 416 RTGRWLTPFKAAW-DPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred cccccccchhhee-CCCccEEEEeccCcceeEEcCCCCE
Confidence 2233455666 9999999999999999999988876
No 132
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.88 E-value=1.7e-21 Score=195.19 Aligned_cols=273 Identities=14% Similarity=0.191 Sum_probs=216.7
Q ss_pred ccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEc-cCCCEEEEEeCCCeEEEEEeecCC-----------
Q 009569 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFS-HDGKYLASSSKDQSAIIWEVKEDG----------- 305 (532)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s-~~g~~las~s~dg~i~iwd~~~~~----------- 305 (532)
+++...|..+..|--.+... ..+.++.-.||..+..|+.|. .+|.++.+++.|++.+.+++....
T Consensus 303 l~ta~~DnSlk~~vfD~~dg---~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~ 379 (910)
T KOG1539|consen 303 LVTAGADNSLKVWVFDSGDG---VPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNK 379 (910)
T ss_pred EeeccCCCceeEEEeeCCCC---cchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccc
Confidence 34555666666554332111 146677788999999999998 588899999999887777653100
Q ss_pred ----e------------------------------e------EEE------------EEe-----ecCCCCeEEEEeCCC
Q 009569 306 ----Q------------------------------V------SLK------------HRL-----SGHRKPVFTVSWSPN 328 (532)
Q Consensus 306 ----~------------------------------~------~~~------------~~~-----~~h~~~v~~l~~s~~ 328 (532)
. + ... +.+ +.....+++++.++.
T Consensus 380 ~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~C 459 (910)
T KOG1539|consen 380 KRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFC 459 (910)
T ss_pred cccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEecc
Confidence 0 0 000 001 112256889999999
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEe---eccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceE
Q 009569 329 DHQLLTCGQEEAIRRWDVNSGECLHVY---EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRIS 405 (532)
Q Consensus 329 ~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 405 (532)
|++.+.|...|.|-+|++.+|-....| ..|..+|+.++...-++.+++++.+|.+++||..++.+........ .+.
T Consensus 460 GNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~-~~~ 538 (910)
T KOG1539|consen 460 GNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGS-SIT 538 (910)
T ss_pred CceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCC-Ccc
Confidence 999999999999999999999888888 4789999999998888899999999999999998876544333332 788
Q ss_pred EEEEeeCCCEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEecc
Q 009569 406 DMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483 (532)
Q Consensus 406 ~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 483 (532)
++.++.....++.+..|-.|+++|..+.+ ..+.+|...|+.++|||||++|++++.|++|++||+.++ .++-.+.-.
T Consensus 539 ~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~-~lID~~~vd 617 (910)
T KOG1539|consen 539 GIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG-TLIDGLLVD 617 (910)
T ss_pred eeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc-ceeeeEecC
Confidence 99999988899999999999999999888 778899999999999999999999999999999999998 777776654
Q ss_pred ccceEEEEEccCCCCCcEEEEEeCC-CcEEEEeCCCC
Q 009569 484 KRARFVIRSCFGGFEQAFIASGSED-SQVNIFLSFSP 519 (532)
Q Consensus 484 ~~~~~~i~~~~~s~d~~~l~sgs~d-g~i~iw~~~~~ 519 (532)
.. ++.+.| +|+|.+|||...| .-|++|.-.+-
T Consensus 618 ~~---~~sls~-SPngD~LAT~Hvd~~gIylWsNksl 650 (910)
T KOG1539|consen 618 SP---CTSLSF-SPNGDFLATVHVDQNGIYLWSNKSL 650 (910)
T ss_pred Cc---ceeeEE-CCCCCEEEEEEecCceEEEEEchhH
Confidence 44 355677 9999999999999 56999986553
No 133
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.2e-20 Score=169.52 Aligned_cols=225 Identities=12% Similarity=0.206 Sum_probs=183.8
Q ss_pred EEEEEeCCCeEEEEEeecCC---------eeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEee
Q 009569 286 YLASSSKDQSAIIWEVKEDG---------QVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE 356 (532)
Q Consensus 286 ~las~s~dg~i~iwd~~~~~---------~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 356 (532)
.|++|++...|.-+++.-.. .+.+...+..|.++|++++.+ +.++++|+.|.+|+|||+.+...+..+-
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee
Confidence 36777887777777664221 123456778899999999995 8899999999999999999999999999
Q ss_pred ccCCceEEEEEeeCCC--eEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc
Q 009569 357 KTGVGLISCGWFLDGG--GIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF 434 (532)
Q Consensus 357 ~~~~~i~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~ 434 (532)
.|.+.|+++.|.++-. .|++|+.||.|.+|+.....+......|.+.|+.++++|.+++-++.+.|+.++.||+-.++
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 9999999999998765 89999999999999999888877777777789999999999999999999999999998888
Q ss_pred -eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEE
Q 009569 435 -ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNI 513 (532)
Q Consensus 435 -~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~i 513 (532)
..........+.+.|+|.|.+++++.. ..|-+|.+.+. .....+..... .++..| -++..+++|++|+.|.+
T Consensus 161 ~a~v~~L~~~at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A-~v~~~i~~~~r---~l~~~~--l~~~~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 161 VAFVLNLKNKATLVSWSPQGDHFVVSGR-NKIDIYQLDNA-SVFREIENPKR---ILCATF--LDGSELLVGGDNEWISL 233 (362)
T ss_pred cceeeccCCcceeeEEcCCCCEEEEEec-cEEEEEecccH-hHhhhhhcccc---ceeeee--cCCceEEEecCCceEEE
Confidence 333344445566999999999988885 45899998876 55555544322 244444 46788999999999999
Q ss_pred EeCCCC
Q 009569 514 FLSFSP 519 (532)
Q Consensus 514 w~~~~~ 519 (532)
||.++.
T Consensus 234 ~D~ds~ 239 (362)
T KOG0294|consen 234 KDTDSD 239 (362)
T ss_pred eccCCC
Confidence 999874
No 134
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=1.7e-21 Score=189.92 Aligned_cols=246 Identities=20% Similarity=0.321 Sum_probs=190.0
Q ss_pred EEEEcc---CCCEEEEEeCCCeEEEEEeecCCeeE----EEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCC
Q 009569 277 FLQFSH---DGKYLASSSKDQSAIIWEVKEDGQVS----LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (532)
Q Consensus 277 ~v~~s~---~g~~las~s~dg~i~iwd~~~~~~~~----~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 349 (532)
++.|++ ..+.||.+..||.|.++|...- .+. .+..+..|.+.|.++.|.|....|++++.|.++++||+.++
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~-~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSI-VFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhh-hcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 355655 3467899999999999998742 111 13456789999999999997789999999999999999999
Q ss_pred cEEEE--eeccCCceEEEEEee-CCCeEEEEeCCCcEEEEECCCCeEEE-----------ee----------------cC
Q 009569 350 ECLHV--YEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELES-----------WK----------------GQ 399 (532)
Q Consensus 350 ~~~~~--~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~-----------~~----------------~~ 399 (532)
+++.. +.+|...+.++||.| +...|++|+.||.|.|||++-..... .. ..
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 98876 889999999999999 55678899999999999997322100 00 01
Q ss_pred ccCceEE---EEEeeCCCEEEEEEC-CCeEEEEECCCCce----------eeeec---CCceeEEEEcCCCCEEEEEecC
Q 009569 400 KTLRISD---MAITDDGKRIISICR-EAAILLLDREANFE----------RWIEE---EEVITSFSLSKDNKYLLVNLIN 462 (532)
Q Consensus 400 ~~~~v~~---~~~s~~~~~l~~~~~-dg~I~iwd~~~~~~----------~~~~~---~~~i~~~~~sp~~~~l~~~~~d 462 (532)
+...|.+ +.+..|...|++++. |+.|+|||++.... .+..+ ...++++.....|.+|++.+.|
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 1223444 555677888998886 99999999987651 11122 3457888888889999999999
Q ss_pred CeEEEEecCCC-CcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCCceee
Q 009569 463 QEIHLWSIESD-PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPFAKKI 524 (532)
Q Consensus 463 g~i~iwd~~~~-~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~~~~~ 524 (532)
+.|++|++.+. ..++..+.++....+.+..+. +||+.++++|+.|...++|.+.+......
T Consensus 293 ~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~l-Spd~~~l~SgSsd~~ayiw~vs~~e~~~~ 354 (720)
T KOG0321|consen 293 NSIYFYNMRSLSISPVAEFSGKLNSSFYVKSEL-SPDDCSLLSGSSDEQAYIWVVSSPEAPPA 354 (720)
T ss_pred CcEEEEeccccCcCchhhccCcccceeeeeeec-CCCCceEeccCCCcceeeeeecCccCChh
Confidence 99999999764 246667777777666666666 99999999999999999999998765433
No 135
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=8.4e-23 Score=201.47 Aligned_cols=196 Identities=17% Similarity=0.289 Sum_probs=177.9
Q ss_pred eEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEE
Q 009569 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (532)
Q Consensus 265 ~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 344 (532)
+..+.+|..+|.|+.|+++..+|++|+.+|+|++||++.. +.++++.+|...+.++.|+|-+.+.++|+.|+.+++|
T Consensus 63 i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA---k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iw 139 (825)
T KOG0267|consen 63 ITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA---KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIW 139 (825)
T ss_pred hheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh---hhhhhhhccccCcceeeeccceEEeccccccccceeh
Confidence 3458999999999999999999999999999999999966 4567999999999999999999999999999999999
Q ss_pred ECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCe
Q 009569 345 DVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAA 424 (532)
Q Consensus 345 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 424 (532)
|++...|...+.+|...+..+.|+|+|++++.|+.|.++++||+..+++...+..|.+.+..+.|+|..-.++.|+.|++
T Consensus 140 D~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t 219 (825)
T KOG0267|consen 140 DIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT 219 (825)
T ss_pred hhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce
Confidence 99988899999999999999999999999999999999999999888887777777779999999999999999999999
Q ss_pred EEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCC
Q 009569 425 ILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQ 463 (532)
Q Consensus 425 I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg 463 (532)
|++||+++.. .........|.+.+|+|+++.+++|....
T Consensus 220 v~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 220 VRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 9999999876 33334467899999999999999987544
No 136
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=4.2e-21 Score=188.94 Aligned_cols=285 Identities=16% Similarity=0.226 Sum_probs=219.4
Q ss_pred ccccccCCCCCceeeccCCccCCCCC-----cceeEEcccccccEEEEEEccC-----------CCEEEEEeCCCeEEEE
Q 009569 236 SCLFHNTSDSDFSLYSDHQCGRNRIP-----SQTLQILEAHSDEVWFLQFSHD-----------GKYLASSSKDQSAIIW 299 (532)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~h~~~V~~v~~s~~-----------g~~las~s~dg~i~iw 299 (532)
.|.|....+....+|.||....|... +++. .+--|...||.+.--|. ...++||+.|++|++|
T Consensus 329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~-s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCS-SMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW 407 (1080)
T ss_pred EEEecCCCceEEEEEcCceEEEEecccccccccee-eeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence 35666666766777888877666543 2332 33459999999887661 1358999999999999
Q ss_pred EeecCC--eeE--------------------------------EEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEE
Q 009569 300 EVKEDG--QVS--------------------------------LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (532)
Q Consensus 300 d~~~~~--~~~--------------------------------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 345 (532)
++.... ... .....-+....+.+++.||+|++|++|..-|+++||+
T Consensus 408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~ 487 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYD 487 (1080)
T ss_pred ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEE
Confidence 987411 110 0000112334689999999999999999999999999
Q ss_pred CCCCcEEEEeeccCCceEEEEEee---CCCeEEEEeCCCcEEEEECC-CCeEEEeecCccCceEEEEEeeCC--CEEEEE
Q 009569 346 VNSGECLHVYEKTGVGLISCGWFL---DGGGIFAGMTDKSICLWDLD-GRELESWKGQKTLRISDMAITDDG--KRIISI 419 (532)
Q Consensus 346 ~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~ 419 (532)
+..-+....++.|...|.|+.|+. ..++|++++.|..|.+||.. +-.+......|...|+++.|--.| ..++++
T Consensus 488 Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Misc 567 (1080)
T KOG1408|consen 488 LQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISC 567 (1080)
T ss_pred ehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEec
Confidence 999988899999999999999985 45789999999999999985 445555666777799999999877 688999
Q ss_pred ECCCeEEEEECCCCc--eeee-----ecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccc-eEEEE
Q 009569 420 CREAAILLLDREANF--ERWI-----EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRA-RFVIR 491 (532)
Q Consensus 420 ~~dg~I~iwd~~~~~--~~~~-----~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~i~ 491 (532)
+.|..|.+--.+... ..+. .....+..|+..|..+++++++.|..|+|||+.++ +..+.|++.... ...|.
T Consensus 568 GADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg-Kq~k~FKgs~~~eG~lIK 646 (1080)
T KOG1408|consen 568 GADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG-KQVKSFKGSRDHEGDLIK 646 (1080)
T ss_pred cCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc-ceeeeecccccCCCceEE
Confidence 999887654333211 2222 23456889999999999999999999999999999 889999875443 44566
Q ss_pred EccCCCCCcEEEEEeCCCcEEEEeCCCCCcee
Q 009569 492 SCFGGFEQAFIASGSEDSQVNIFLSFSPFAKK 523 (532)
Q Consensus 492 ~~~~s~d~~~l~sgs~dg~i~iw~~~~~~~~~ 523 (532)
+.. .|.|.||++...|.++.++|+.+++...
T Consensus 647 v~l-DPSgiY~atScsdktl~~~Df~sgEcvA 677 (1080)
T KOG1408|consen 647 VIL-DPSGIYLATSCSDKTLCFVDFVSGECVA 677 (1080)
T ss_pred EEE-CCCccEEEEeecCCceEEEEeccchhhh
Confidence 666 9999999999999999999999987543
No 137
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=1.1e-20 Score=173.47 Aligned_cols=203 Identities=16% Similarity=0.270 Sum_probs=166.4
Q ss_pred ccccccEEEEEEccCC--CEEEEEeCCCeEEEEEeec-------------CCeeEEEEEeecCCCCeEEEEeCCCC-CEE
Q 009569 269 EAHSDEVWFLQFSHDG--KYLASSSKDQSAIIWEVKE-------------DGQVSLKHRLSGHRKPVFTVSWSPND-HQL 332 (532)
Q Consensus 269 ~~h~~~V~~v~~s~~g--~~las~s~dg~i~iwd~~~-------------~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l 332 (532)
-+|.+.|+.+.-++-+ .+.|+-+..|.|.||++.. ....+++.++.+|...=+.++|||-. -.|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3588888888887754 4566667889999999852 12345678889999999999999932 357
Q ss_pred EEeeCCCcEEEEECCCCcEE---EEeeccCCceEEEEEee-CCCeEEEEeCCCcEEEEECCCC---eEEEeecCccCceE
Q 009569 333 LTCGQEEAIRRWDVNSGECL---HVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGR---ELESWKGQKTLRIS 405 (532)
Q Consensus 333 ~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~ 405 (532)
++|..-+.|++|...+|.-. ..|.+|...|-.++|+| ....|++|+.||+|+|||++.+ ..... ..|.+.|+
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVN 306 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVN 306 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCcee
Confidence 88888889999999887643 35667999999999999 4567889999999999999975 33333 45555899
Q ss_pred EEEEeeCCCEEEEEECCCeEEEEECCCCc-----eeeeecCCceeEEEEcCC-CCEEEEEecCCeEEEEecCC
Q 009569 406 DMAITDDGKRIISICREAAILLLDREANF-----ERWIEEEEVITSFSLSKD-NKYLLVNLINQEIHLWSIES 472 (532)
Q Consensus 406 ~~~~s~~~~~l~~~~~dg~I~iwd~~~~~-----~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~i~iwd~~~ 472 (532)
.|.|+.+-.+|++|+.||+++|||++..+ ..+..|..+|+++.|+|. ...|++++.|.+|.+||+.-
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 99999988899999999999999999876 478899999999999995 46788888999999999964
No 138
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=9.1e-21 Score=186.45 Aligned_cols=288 Identities=17% Similarity=0.267 Sum_probs=218.3
Q ss_pred HHHhcccc-cccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCee
Q 009569 229 ALDVQRDS-CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQV 307 (532)
Q Consensus 229 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~ 307 (532)
++.|+... .+++.+.|..+-+|.......--...-.+-...+.....+.+.|+|+++.+++-+..|-.++|........
T Consensus 272 sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w 351 (764)
T KOG1063|consen 272 SVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFW 351 (764)
T ss_pred EEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccce
Confidence 34455554 66778888888888755432111112233344456678999999999999999999999999995544555
Q ss_pred EEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCC----cEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcE
Q 009569 308 SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG----ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSI 383 (532)
Q Consensus 308 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 383 (532)
.....+.||.+.|.+++|+|.|.+|++.+.|.+-+++-.-.. ..+..-+.|+..++|+++-+....|++|...+.+
T Consensus 352 ~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVl 431 (764)
T KOG1063|consen 352 TQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVL 431 (764)
T ss_pred eeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceee
Confidence 666778899999999999999999999999999998875411 2233345678889999999866778888888888
Q ss_pred EEEECCC----------C-----------------------eEE------------Eee---------------------
Q 009569 384 CLWDLDG----------R-----------------------ELE------------SWK--------------------- 397 (532)
Q Consensus 384 ~iwd~~~----------~-----------------------~~~------------~~~--------------------- 397 (532)
++|+... + ... ...
T Consensus 432 RvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~ 511 (764)
T KOG1063|consen 432 RVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQ 511 (764)
T ss_pred eeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHH
Confidence 9886531 0 000 000
Q ss_pred ----------cCccCceEEEEEeeCCCEEEEEECC-----CeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEe
Q 009569 398 ----------GQKTLRISDMAITDDGKRIISICRE-----AAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNL 460 (532)
Q Consensus 398 ----------~~~~~~v~~~~~s~~~~~l~~~~~d-----g~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~ 460 (532)
.+|...|++++.+|+++++++++.. ..|++|+..+.. ..+..|.-.|+.++||||+++|++.+
T Consensus 512 ~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvs 591 (764)
T KOG1063|consen 512 NTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVS 591 (764)
T ss_pred hccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEee
Confidence 0455689999999999999999854 459999999877 66889999999999999999999999
Q ss_pred cCCeEEEEecCCCCcceeE---EeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC
Q 009569 461 INQEIHLWSIESDPKLVSR---YKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSP 519 (532)
Q Consensus 461 ~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~ 519 (532)
.|.++.+|........-.. .+.|..- |..|-++|++.+++|+|.|.+|++|.....
T Consensus 592 RDRt~sl~~~~~~~~~e~~fa~~k~HtRI---IWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 592 RDRTVSLYEVQEDIKDEFRFACLKAHTRI---IWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred cCceEEeeeeecccchhhhhccccccceE---EEEcccCcccceeEEecCCceEEEEeccCc
Confidence 9999999998654222223 4556554 433444999999999999999999999876
No 139
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=2.9e-19 Score=173.91 Aligned_cols=232 Identities=12% Similarity=0.110 Sum_probs=170.5
Q ss_pred CCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEE-EEeeCCCcEEEEECCCCcEEEEeeccCCce
Q 009569 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQL-LTCGQEEAIRRWDVNSGECLHVYEKTGVGL 362 (532)
Q Consensus 284 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i 362 (532)
+..+++++.|+.+++||..++. ....+..+.. +.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~---~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~ 75 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLE---VTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-P 75 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCc---eEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-c
Confidence 3568899999999999998663 4455555544 6789999999876 5667789999999999988777765443 5
Q ss_pred EEEEEeeCCCeEEEE-eCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCC-eEEEEECCCCc-eeeee
Q 009569 363 ISCGWFLDGGGIFAG-MTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREA-AILLLDREANF-ERWIE 439 (532)
Q Consensus 363 ~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~I~iwd~~~~~-~~~~~ 439 (532)
..++|+|+++.++++ ..++.+++||+++.......... ..+.+++|+|++.+++++..++ .+.+||..+.. .....
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL 154 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence 678999999977665 46899999999876554433322 2578899999999999888765 57788988766 22233
Q ss_pred cCCceeEEEEcCCCCEEEEEe-cCCeEEEEecCCCCcceeEEeccc-----cceEEEEEccCCCCCcEEEE-EeCCCcEE
Q 009569 440 EEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYKGHK-----RARFVIRSCFGGFEQAFIAS-GSEDSQVN 512 (532)
Q Consensus 440 ~~~~i~~~~~sp~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~i~~~~~s~d~~~l~s-gs~dg~i~ 512 (532)
....+.+++|+|+++++++++ .++.|++||+.++ +.+..+..+. .......+.| +|++++++. .+.++.|.
T Consensus 155 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~-s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 155 VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITFEIPGVHPEAVQPVGIKL-TKDGKTAFVALGPANRVA 232 (300)
T ss_pred cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeecccccccccCCccceEE-CCCCCEEEEEcCCCCeEE
Confidence 445567899999999886554 5899999999987 6666554321 1112233556 899998654 45577899
Q ss_pred EEeCCCCCcee
Q 009569 513 IFLSFSPFAKK 523 (532)
Q Consensus 513 iw~~~~~~~~~ 523 (532)
+||..+++...
T Consensus 233 v~d~~~~~~~~ 243 (300)
T TIGR03866 233 VVDAKTYEVLD 243 (300)
T ss_pred EEECCCCcEEE
Confidence 99998876543
No 140
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4.1e-20 Score=187.40 Aligned_cols=259 Identities=10% Similarity=0.161 Sum_probs=196.7
Q ss_pred cccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecC
Q 009569 237 CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h 316 (532)
.+++.+.++.++.|...... ....++.-|...|.+++- ++.+|++|+.+++|.+|.+.++..-..+ .-.
T Consensus 27 fi~tcgsdg~ir~~~~~sd~------e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL---~Rf 95 (933)
T KOG1274|consen 27 FICTCGSDGDIRKWKTNSDE------EEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTIL---ARF 95 (933)
T ss_pred EEEEecCCCceEEeecCCcc------cCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCcccee---eee
Confidence 45567778888888755431 111122237777777765 5569999999999999999876432233 334
Q ss_pred CCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEe
Q 009569 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW 396 (532)
Q Consensus 317 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 396 (532)
+-++.+++|+-+|++++.||.|-.|++-++.+......+++|.++|.++.|+|++++|++.+.||.|++||+.++.+...
T Consensus 96 tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~t 175 (933)
T KOG1274|consen 96 TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKT 175 (933)
T ss_pred eccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999987554332
Q ss_pred ec--------CccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCceee----eecCCceeEEEEcCCCCEEEEEecCCe
Q 009569 397 KG--------QKTLRISDMAITDDGKRIISICREAAILLLDREANFERW----IEEEEVITSFSLSKDNKYLLVNLINQE 464 (532)
Q Consensus 397 ~~--------~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~~~~----~~~~~~i~~~~~sp~~~~l~~~~~dg~ 464 (532)
.. .....+..++|+|+|..+++.+.|+.|++|+..++...+ ..+...+..+.|+|+|+|||+++.||.
T Consensus 176 l~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~ 255 (933)
T KOG1274|consen 176 LTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQ 255 (933)
T ss_pred cccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCc
Confidence 21 112357789999999999999999999999999987222 233444999999999999999999999
Q ss_pred EEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEE
Q 009569 465 IHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIF 514 (532)
Q Consensus 465 i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw 514 (532)
|.|||+.+. .. |.....++..+| .|+++-|-.-...|...+|
T Consensus 256 I~vWnv~t~-~~------~~~~~~Vc~~aw-~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 256 ILVWNVDTH-ER------HEFKRAVCCEAW-KPNANAITLITALGTLGVS 297 (933)
T ss_pred EEEEecccc-hh------ccccceeEEEec-CCCCCeeEEEeeccccccC
Confidence 999999873 11 333333444455 7777665444444444333
No 141
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=1.3e-21 Score=178.74 Aligned_cols=213 Identities=17% Similarity=0.244 Sum_probs=175.4
Q ss_pred EEEEeecCCCCeEEEEeCCCC-CEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEE
Q 009569 309 LKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387 (532)
Q Consensus 309 ~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 387 (532)
.+..+.+|...|.+++=+|.. ..+++|+.||.|+|||+.+..+..+++.|.+.|..+++.. ..+++++.|.+|+.|-
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 345568999999999999976 7899999999999999999999999999999999999975 6788899999999997
Q ss_pred CCCCeEEE----------------------------eec----------CccCceEEEEEeeCCC-EEEEEECCCeEEEE
Q 009569 388 LDGRELES----------------------------WKG----------QKTLRISDMAITDDGK-RIISICREAAILLL 428 (532)
Q Consensus 388 ~~~~~~~~----------------------------~~~----------~~~~~v~~~~~s~~~~-~l~~~~~dg~I~iw 428 (532)
+++..... |.. .....|.++.|+|... .|+++..|+.|.+|
T Consensus 136 ~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLy 215 (433)
T KOG0268|consen 136 IDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLY 215 (433)
T ss_pred ccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEE
Confidence 54322111 111 1122577888888554 56677799999999
Q ss_pred ECCCCc-eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeC
Q 009569 429 DREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE 507 (532)
Q Consensus 429 d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~ 507 (532)
|++... .........-+.|+|+|.+-.++++++|..++.||++....++..+.+|... ++.+.| +|.|+-+++||.
T Consensus 216 D~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsA--V~dVdf-sptG~Efvsgsy 292 (433)
T KOG0268|consen 216 DLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSA--VMDVDF-SPTGQEFVSGSY 292 (433)
T ss_pred ecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhccccee--EEEecc-CCCcchhccccc
Confidence 999988 4445556667889999988888999999999999999888899999999887 566778 999999999999
Q ss_pred CCcEEEEeCCCCCceeeec
Q 009569 508 DSQVNIFLSFSPFAKKIKY 526 (532)
Q Consensus 508 dg~i~iw~~~~~~~~~~~~ 526 (532)
|.+|+||.++.+....+-+
T Consensus 293 DksIRIf~~~~~~SRdiYh 311 (433)
T KOG0268|consen 293 DKSIRIFPVNHGHSRDIYH 311 (433)
T ss_pred cceEEEeecCCCcchhhhh
Confidence 9999999999876555443
No 142
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=6.5e-21 Score=180.52 Aligned_cols=256 Identities=12% Similarity=0.192 Sum_probs=200.9
Q ss_pred HHhccccccc--ccCCCCCceeeccCCccCCCCCc-ceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCe
Q 009569 230 LDVQRDSCLF--HNTSDSDFSLYSDHQCGRNRIPS-QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ 306 (532)
Q Consensus 230 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~ 306 (532)
+.|+....+. ..+.+..+++|.... . .|. ..+..+.+. .-.|++......|+++|+..+.|+|||++..
T Consensus 40 ~~w~~~n~lvvas~~gdk~~~~~~K~g--~--~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k-- 111 (673)
T KOG4378|consen 40 FNWQRRNFLVVASMAGDKVMRIKEKDG--K--TPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAK-- 111 (673)
T ss_pred eeccccceEEEeecCCceeEEEecccC--C--CCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHH--
Confidence 4555555333 344566677775332 1 222 222233333 3334444444589999999999999999833
Q ss_pred eEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeecc-CCceEEEEEeeCCCe-EEEEeCCCcEE
Q 009569 307 VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT-GVGLISCGWFLDGGG-IFAGMTDKSIC 384 (532)
Q Consensus 307 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~-l~~~~~dg~i~ 384 (532)
.+.+.+.+|...|+++.++-...+|++++..|.|.|..+.++.....|... ...|.-+.|+|..+. |.+++.+|.|.
T Consensus 112 -l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vt 190 (673)
T KOG4378|consen 112 -LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVT 190 (673)
T ss_pred -HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEE
Confidence 356778899999999999999999999999999999999999888888766 445568899996665 55688999999
Q ss_pred EEECCC-CeEEEeecCccCceEEEEEeeCC-CEEEEEECCCeEEEEECCCCc-eeeeecCCceeEEEEcCCCCEEEEEec
Q 009569 385 LWDLDG-RELESWKGQKTLRISDMAITDDG-KRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLI 461 (532)
Q Consensus 385 iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~I~iwd~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~ 461 (532)
+||+.+ .+...+...|..+...|+|+|.. .+|++.+.|..|.+||.+... ...+....+.+.++|+++|.+|++|..
T Consensus 191 lwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 191 LWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred EEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecC
Confidence 999987 45667777888899999999954 578889999999999999877 556667788999999999999999999
Q ss_pred CCeEEEEecCCCCcceeEEeccccceEEEEEcc
Q 009569 462 NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCF 494 (532)
Q Consensus 462 dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 494 (532)
.|.|..||++..+.++..+..|...+..+.+..
T Consensus 271 ~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 271 KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred CceEEEEecccCCCCceEeeecccceeEEEeee
Confidence 999999999998899999999999876655544
No 143
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=9.3e-21 Score=171.16 Aligned_cols=271 Identities=17% Similarity=0.275 Sum_probs=197.9
Q ss_pred ccccCCCCCceeeccCCccCCCCCcceeEEcc--cccccEEEEEEccC----CCEEEEEeCCCeEEEEEeecCCeeEEEE
Q 009569 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILE--AHSDEVWFLQFSHD----GKYLASSSKDQSAIIWEVKEDGQVSLKH 311 (532)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~v~~s~~----g~~las~s~dg~i~iwd~~~~~~~~~~~ 311 (532)
+|...+...+.+|.-..-. ....++... .|......++|+-+ ..++|.|+.-|.|+|.|+.++ ....
T Consensus 57 vfatvG~~rvtiy~c~~d~----~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~---~~~~ 129 (385)
T KOG1034|consen 57 VFATVGGNRVTIYECPGDG----GIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG---QCSK 129 (385)
T ss_pred eEEEeCCcEEEEEEECCcc----ceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh---hhcc
Confidence 3444444566666433211 123344332 47778888999874 348999999999999999876 4667
Q ss_pred EeecCCCCeEEEEeCCCC-CEEEEeeCCCcEEEEECCCCcEEEEee---ccCCceEEEEEeeCCCeEEEEeCCCcEEEEE
Q 009569 312 RLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSGECLHVYE---KTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387 (532)
Q Consensus 312 ~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 387 (532)
.+.+|...|+.+.+.|+. ++++++|.|.+|++|++++..|+..|- +|.+.|.++.|+++|.+|++++.|.++++|+
T Consensus 130 ~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~ 209 (385)
T KOG1034|consen 130 NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWR 209 (385)
T ss_pred ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEe
Confidence 888999999999999965 799999999999999999999998874 6889999999999999999999999999999
Q ss_pred CCCCeEEEe----------------------------ecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc-----
Q 009569 388 LDGRELESW----------------------------KGQKTLRISDMAITDDGKRIISICREAAILLLDREANF----- 434 (532)
Q Consensus 388 ~~~~~~~~~----------------------------~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~----- 434 (532)
+..++.... ...|...|.|+.|- |+++++-+.++.|..|......
T Consensus 210 l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~ 287 (385)
T KOG1034|consen 210 LNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHN 287 (385)
T ss_pred cChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhc
Confidence 984221100 01122234444443 5788998999999999873211
Q ss_pred -------eeee----ecCCcee--EEEEcCCCCEEEEEecCCeEEEEecCCCCc-ceeEEeccccceEEEEEccCCCCCc
Q 009569 435 -------ERWI----EEEEVIT--SFSLSKDNKYLLVNLINQEIHLWSIESDPK-LVSRYKGHKRARFVIRSCFGGFEQA 500 (532)
Q Consensus 435 -------~~~~----~~~~~i~--~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~i~~~~~s~d~~ 500 (532)
.+.. .....|. ..+|.|-++.|+.|...|.|++||++.... ...++..+.....+-..+| +.|+.
T Consensus 288 vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sf-S~dgs 366 (385)
T KOG1034|consen 288 VKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSF-SRDGS 366 (385)
T ss_pred cCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeee-cccCc
Confidence 1111 1122333 456677789999999999999999998743 2334444444555556677 99999
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 009569 501 FIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 501 ~l~sgs~dg~i~iw~~~~ 518 (532)
+|+...+|+.|.-||.-+
T Consensus 367 ~lv~vcdd~~Vwrwdrv~ 384 (385)
T KOG1034|consen 367 ILVLVCDDGTVWRWDRVS 384 (385)
T ss_pred EEEEEeCCCcEEEEEeec
Confidence 999999999999999753
No 144
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.86 E-value=6.8e-20 Score=165.23 Aligned_cols=241 Identities=18% Similarity=0.217 Sum_probs=184.3
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEEeecCC-------e--eEEEEEee-cCCCCeEEEEeC-------CCCCEEEEeeCC
Q 009569 276 WFLQFSHDGKYLASSSKDQSAIIWEVKEDG-------Q--VSLKHRLS-GHRKPVFTVSWS-------PNDHQLLTCGQE 338 (532)
Q Consensus 276 ~~v~~s~~g~~las~s~dg~i~iwd~~~~~-------~--~~~~~~~~-~h~~~v~~l~~s-------~~~~~l~s~~~d 338 (532)
..+.|||||..|.+-+.|..+.+|++.... . .+....+. .....|...+|- |+..++++.+.+
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 467899999999999999999999986321 0 11111111 123457777775 567899999999
Q ss_pred CcEEEEECCCCcEEEEeeccC-----CceEEEEEeeCCCeEEEEeCCCcEEEEEC-CCC-eE--EEe----ecCccCceE
Q 009569 339 EAIRRWDVNSGECLHVYEKTG-----VGLISCGWFLDGGGIFAGMTDKSICLWDL-DGR-EL--ESW----KGQKTLRIS 405 (532)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~-~~--~~~----~~~~~~~v~ 405 (532)
.-|++||.-+|+....+.... ....+++|+|||.+|++|. ...|+++|+ +.+ .. ... .....+-+.
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giis 211 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS 211 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence 999999999999887776432 2346899999999999876 578999999 322 11 111 112234789
Q ss_pred EEEEeeC-CCEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEec-CCeEEEEecCCCCcceeEEe
Q 009569 406 DMAITDD-GKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDPKLVSRYK 481 (532)
Q Consensus 406 ~~~~s~~-~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~ 481 (532)
+++|+|. .+.+++++...++-||.-.... ..+.+|.+.|+.+.|.++|+.|++|.. |..|..||++....++..+.
T Consensus 212 c~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~ 291 (406)
T KOG2919|consen 212 CFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE 291 (406)
T ss_pred eeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhh
Confidence 9999995 4589999998888888776665 666789999999999999999999976 67899999998878888888
Q ss_pred cccc-ceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 482 GHKR-ARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 482 ~~~~-~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
.|.. .-..|.+.. .|++++|++|+.||.|++||++.
T Consensus 292 rhv~~TNQRI~FDl-d~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 292 RHVGDTNQRILFDL-DPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred hhccCccceEEEec-CCCCceeeccCCCccEEEEecCC
Confidence 7765 222333444 78999999999999999999987
No 145
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.1e-19 Score=171.01 Aligned_cols=242 Identities=15% Similarity=0.184 Sum_probs=191.0
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCC-EEEEeeCCCcEEEEECCCCc
Q 009569 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH-QLLTCGQEEAIRRWDVNSGE 350 (532)
Q Consensus 272 ~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~ 350 (532)
.+.|+++.|+|....|.+|+.|++++||.+.. +.-..+..+.--..+|.+.+|.|+|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDG-k~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDG-KVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecC-ccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 47899999999999999999999999999983 33345566666678999999999998 89999999999999998887
Q ss_pred EEEE--eecc-CCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEE
Q 009569 351 CLHV--YEKT-GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILL 427 (532)
Q Consensus 351 ~~~~--~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~i 427 (532)
.... ..++ ...+.....++++++|+..+..|.|.+....+++......... .|.+++|+.|++.|++++.+|.|.+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG-~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG-VVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc-EEeeEEEecCCcEEEEEcCCceEEE
Confidence 5432 2222 2346677889999999999999999999988877655554443 8999999999999999999999999
Q ss_pred EECCCCc-eeeeecCCc--eeEEEEcCCCCEEEEEecCCeEEEEecCC-----CCcceeEEeccccceEEEEEccCCCCC
Q 009569 428 LDREANF-ERWIEEEEV--ITSFSLSKDNKYLLVNLINQEIHLWSIES-----DPKLVSRYKGHKRARFVIRSCFGGFEQ 499 (532)
Q Consensus 428 wd~~~~~-~~~~~~~~~--i~~~~~sp~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~i~~~~~s~d~ 499 (532)
||++... ......++. -++++.|+++.||++|+..|.|.|||..+ ..+++.++..-...+ ..+.| ++|+
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~I--tsl~F-n~d~ 447 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAI--TSLQF-NHDA 447 (514)
T ss_pred EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheee--eeeee-Ccch
Confidence 9999887 222223333 46788889999999999999999999653 235565555444442 23455 9999
Q ss_pred cEEEEEeC--CCcEEEEeCCC
Q 009569 500 AFIASGSE--DSQVNIFLSFS 518 (532)
Q Consensus 500 ~~l~sgs~--dg~i~iw~~~~ 518 (532)
++||.+|. +..+++-.+.+
T Consensus 448 qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 448 QILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred hhhhhhhhccccceEEEeccc
Confidence 99988875 56788877765
No 146
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.84 E-value=2.3e-18 Score=163.85 Aligned_cols=251 Identities=16% Similarity=0.217 Sum_probs=191.7
Q ss_pred EcccccccEEEEEEccCCC-EEEEEeCCCeEEEEEeecCCeeEEEEEeecCC-CCeEEEEeCCCCCEEEEeeCCCcEEEE
Q 009569 267 ILEAHSDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR-KPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (532)
Q Consensus 267 ~l~~h~~~V~~v~~s~~g~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~dg~i~iw 344 (532)
..+..++.|..+.|+|.+. .++++ ..+.+..|+.+.+.-.+....+..+. .-|.|++|.++|. +++|..+|.|.||
T Consensus 195 ~vk~sne~v~~a~FHPtd~nliit~-Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw 272 (626)
T KOG2106|consen 195 PVKTSNEVVFLATFHPTDPNLIITC-GKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIW 272 (626)
T ss_pred cceeccceEEEEEeccCCCcEEEEe-CCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEE
Confidence 3445667889999999554 55555 46789999999776555555555543 5689999999885 6799999999999
Q ss_pred ECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCC------------eEEEee---------------
Q 009569 345 DVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR------------ELESWK--------------- 397 (532)
Q Consensus 345 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~--------------- 397 (532)
+..+.+..+....|.+.|.+++...+|.. ++|+.|..|..||-.-+ .++...
T Consensus 273 ~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~i 351 (626)
T KOG2106|consen 273 SKGTNRISKQVHAHDGGVFSLCMLRDGTL-LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFI 351 (626)
T ss_pred eCCCceEEeEeeecCCceEEEEEecCccE-eecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceE
Confidence 99888877777799999999999988865 45999999999984211 111111
Q ss_pred -------------cCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCceeeeecCCceeEEEEcCCCCEEEEEecCCe
Q 009569 398 -------------GQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQE 464 (532)
Q Consensus 398 -------------~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~ 464 (532)
..|......++.+|+.+.+++++.|+.+++|+ ............+..|+.|+|.| .+++|...|.
T Consensus 352 L~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~ 429 (626)
T KOG2106|consen 352 LQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGR 429 (626)
T ss_pred EEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-CCceeEEEEecCceeEeeccCcc-eEEEeeccce
Confidence 12333677888999999999999999999999 22224444556788999999999 9999999999
Q ss_pred EEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCCceeeecc
Q 009569 465 IHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPFAKKIKYT 527 (532)
Q Consensus 465 i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~~~~~~~~ 527 (532)
-.+.|.++. ..+..-.. ..+..+ +.| +|+|.+||.|+.|+.|+||.+.........+.
T Consensus 430 w~V~d~e~~-~lv~~~~d-~~~ls~--v~y-sp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~ 487 (626)
T KOG2106|consen 430 WFVLDTETQ-DLVTIHTD-NEQLSV--VRY-SPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG 487 (626)
T ss_pred EEEEecccc-eeEEEEec-CCceEE--EEE-cCCCCEEEEecCCCeEEEEEECCCCcEEEEee
Confidence 999999885 55544443 555444 455 99999999999999999999987655444443
No 147
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=2e-19 Score=166.20 Aligned_cols=206 Identities=19% Similarity=0.290 Sum_probs=170.3
Q ss_pred EcccccccEEEEEEcc-CCCEEEEEeCCCeEEEEEeecCCe----eEEEEEeecCCCCeEEEEeCCC-CCEEEEeeCCCc
Q 009569 267 ILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQ----VSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEA 340 (532)
Q Consensus 267 ~l~~h~~~V~~v~~s~-~g~~las~s~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~ 340 (532)
...||+++|..++|+| +...||+||.|.+|.||.+..++. ..++..+.+|...|.-+.|+|. .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4678999999999999 777899999999999999986532 2456788999999999999996 468899999999
Q ss_pred EEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEee-cCccCceEEEEEeeCCCEEEEE
Q 009569 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK-GQKTLRISDMAITDDGKRIISI 419 (532)
Q Consensus 341 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~ 419 (532)
|.+||+.+|+.+..+. |...|++++|+.||.++++++.|+.|+|||.+++++.... .+....-..+.|-.+|..+-+|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999988887 9999999999999999999999999999999988876665 3444456677888899855444
Q ss_pred E---CCCeEEEEECCCCc----eeeeecCCceeEEEEcCCCCEEEEEe-cCCeEEEEecCCC
Q 009569 420 C---REAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESD 473 (532)
Q Consensus 420 ~---~dg~I~iwd~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~i~iwd~~~~ 473 (532)
. .+..+-+||..+.. .........|.---|.+|.+.++.++ .|+.|+.|.+...
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred cccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 3 56789999988766 33334455666667888888776554 5899999999876
No 148
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.84 E-value=9.5e-19 Score=172.40 Aligned_cols=276 Identities=20% Similarity=0.298 Sum_probs=209.7
Q ss_pred ccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCC---EEEEEeCCCeEEEEEeecCCe----------
Q 009569 240 HNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGK---YLASSSKDQSAIIWEVKEDGQ---------- 306 (532)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~---~las~s~dg~i~iwd~~~~~~---------- 306 (532)
-++.+..+.++.... + ..+.+..++||.+.|.+++|...+. +||++|.|..|+||.+.-++.
T Consensus 164 ~Ggs~~~v~~~s~~~-d----~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~ 238 (764)
T KOG1063|consen 164 CGGSKFVVDLYSSSA-D----SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSL 238 (764)
T ss_pred ecCcceEEEEeccCC-c----ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccccc
Confidence 344455566666552 1 3466788999999999999998544 889999999999999864320
Q ss_pred --------eEEE----------EEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCC--cEEEE-----eeccCCc
Q 009569 307 --------VSLK----------HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG--ECLHV-----YEKTGVG 361 (532)
Q Consensus 307 --------~~~~----------~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~-----~~~~~~~ 361 (532)
+... ..+.||.+.|+++.|+|.+..|++++.|.++.+|...+. --+.. +.+....
T Consensus 239 t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~G 318 (764)
T KOG1063|consen 239 TTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGG 318 (764)
T ss_pred ccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccc
Confidence 0011 123599999999999999999999999999999987654 22222 2234566
Q ss_pred eEEEEEeeCCCeEEEEeCCCcEEEEECCC---CeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc----
Q 009569 362 LISCGWFLDGGGIFAGMTDKSICLWDLDG---RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF---- 434 (532)
Q Consensus 362 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~---- 434 (532)
.+.+.|+|+++.+++-+.-|..++|-... ........+|...|.+++|+|.|.++++++.|-+-++|-.-..+
T Consensus 319 F~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wH 398 (764)
T KOG1063|consen 319 FWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWH 398 (764)
T ss_pred eeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccccccccee
Confidence 88999999999999999999999998433 23344455666799999999999999999998666654322000
Q ss_pred --------------------------------------------------------------------------------
Q 009569 435 -------------------------------------------------------------------------------- 434 (532)
Q Consensus 435 -------------------------------------------------------------------------------- 434 (532)
T Consensus 399 EiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e 478 (764)
T KOG1063|consen 399 EIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGE 478 (764)
T ss_pred eecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccc
Confidence
Q ss_pred ----------------------------------------eeeeecCCceeEEEEcCCCCEEEEEecCC-----eEEEEe
Q 009569 435 ----------------------------------------ERWIEEEEVITSFSLSKDNKYLLVNLINQ-----EIHLWS 469 (532)
Q Consensus 435 ----------------------------------------~~~~~~~~~i~~~~~sp~~~~l~~~~~dg-----~i~iwd 469 (532)
.++.+|...|.+++.+|+++++++++... .|++|+
T Consensus 479 ~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~ 558 (764)
T KOG1063|consen 479 TNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWN 558 (764)
T ss_pred cccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEe
Confidence 00122677899999999999999998654 599999
Q ss_pred cCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCCceee
Q 009569 470 IESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPFAKKI 524 (532)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~~~~~ 524 (532)
..+. ..++.+.+|.-. +.++.| +|||++|++.|.|.++.+|....+.....
T Consensus 559 t~~W-~~~~~L~~HsLT--VT~l~F-Spdg~~LLsvsRDRt~sl~~~~~~~~~e~ 609 (764)
T KOG1063|consen 559 TANW-LQVQELEGHSLT--VTRLAF-SPDGRYLLSVSRDRTVSLYEVQEDIKDEF 609 (764)
T ss_pred ccch-hhhheecccceE--EEEEEE-CCCCcEEEEeecCceEEeeeeecccchhh
Confidence 9887 777889999877 455777 99999999999999999999876544333
No 149
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.84 E-value=5.6e-20 Score=178.88 Aligned_cols=128 Identities=23% Similarity=0.350 Sum_probs=107.9
Q ss_pred cceeEEcccccccEEEEEEcc-CCCEEEEEeCCCeEEEEEeecCCeeEE---EEEeecCCCCeEEEEeCCCCCEEEEeeC
Q 009569 262 SQTLQILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSL---KHRLSGHRKPVFTVSWSPNDHQLLTCGQ 337 (532)
Q Consensus 262 ~~~~~~l~~h~~~V~~v~~s~-~g~~las~s~dg~i~iwd~~~~~~~~~---~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 337 (532)
.+.+..+.+|.+.|+.+.|+| +..+|||||.|..|+||.+..+-.-+. ...+.+.+-.|.++.|+|...-|+..+.
T Consensus 69 ~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a 148 (1012)
T KOG1445|consen 69 TRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGA 148 (1012)
T ss_pred ccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEecc
Confidence 346778899999999999999 667899999999999999984422111 1223334456889999998776777778
Q ss_pred CCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECC
Q 009569 338 EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD 389 (532)
Q Consensus 338 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 389 (532)
.|+++|||+.+++.+..+.+|...|.+..|+.||..+++++.|+.|+|||.+
T Consensus 149 ~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPR 200 (1012)
T KOG1445|consen 149 HGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPR 200 (1012)
T ss_pred CceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCc
Confidence 8999999999999999999999999999999999999999999999999986
No 150
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.1e-18 Score=156.96 Aligned_cols=264 Identities=17% Similarity=0.238 Sum_probs=194.6
Q ss_pred ccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCC
Q 009569 240 HNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319 (532)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 319 (532)
.+..++.+.+|+-.+. .+-+.+.+|..+|++++||+||+.|+|+|.|..|.+||+..+.. .+.+. ..++
T Consensus 40 vGc~nG~vvI~D~~T~-------~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~---l~rir-f~sp 108 (405)
T KOG1273|consen 40 VGCANGRVVIYDFDTF-------RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP---LKRIR-FDSP 108 (405)
T ss_pred eeccCCcEEEEEcccc-------chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc---eeEEE-ccCc
Confidence 4566777888875553 35567899999999999999999999999999999999998753 33332 5689
Q ss_pred eEEEEeCCCC-CEEEEeeCCCcEEEEECCCCcEEEEeec-c----CCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeE
Q 009569 320 VFTVSWSPND-HQLLTCGQEEAIRRWDVNSGECLHVYEK-T----GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL 393 (532)
Q Consensus 320 v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~----~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 393 (532)
|+.+.|+|.. +..+++-.+..-.+-++..+... .+.. . .....+..|.+.|+++++|...|.+.++|..+.++
T Consensus 109 v~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~ 187 (405)
T KOG1273|consen 109 VWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLEC 187 (405)
T ss_pred cceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEEecCcceEEEEecchhee
Confidence 9999999954 34444444555555565543211 1111 1 11122335888999999999999999999998766
Q ss_pred EEeecCcc-CceEEEEEeeCCCEEEEEECCCeEEEEECCCCc-------ee----e--eecCCceeEEEEcCCCCEEEEE
Q 009569 394 ESWKGQKT-LRISDMAITDDGKRIISICREAAILLLDREANF-------ER----W--IEEEEVITSFSLSKDNKYLLVN 459 (532)
Q Consensus 394 ~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~-------~~----~--~~~~~~i~~~~~sp~~~~l~~~ 459 (532)
........ ..|..+.++..|+.++.-+.|..|+.|+++.-. .. + .-....-.+++||.+|.|++++
T Consensus 188 vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~ 267 (405)
T KOG1273|consen 188 VASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAG 267 (405)
T ss_pred eeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEec
Confidence 55544333 578999999999999999999999999987321 00 0 1123345689999999999988
Q ss_pred ecC-CeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC
Q 009569 460 LIN-QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSP 519 (532)
Q Consensus 460 ~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~ 519 (532)
+.. ..++||....+ .+++.+.|..+.. .+.+.| +|-...|++. ..|.|+||.....
T Consensus 268 s~~aHaLYIWE~~~G-sLVKILhG~kgE~-l~DV~w-hp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 268 SARAHALYIWEKSIG-SLVKILHGTKGEE-LLDVNW-HPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred cccceeEEEEecCCc-ceeeeecCCchhh-eeeccc-ccceeeeeec-cCCceEEEEeecc
Confidence 753 46999998888 8999998877432 355666 8877788877 7899999998764
No 151
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=7.1e-19 Score=163.36 Aligned_cols=281 Identities=15% Similarity=0.238 Sum_probs=204.8
Q ss_pred cccccCCCCCceeeccCCccCCC--CCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEee--------c---
Q 009569 237 CLFHNTSDSDFSLYSDHQCGRNR--IPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVK--------E--- 303 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~--------~--- 303 (532)
.+++++.|..+.+|.-....... ..-+.+..|..|...|+++.|+|+|+.||+|+.+|.|.+|... +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 45678889999999765543332 2345677889999999999999999999999999999999876 2
Q ss_pred --CCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCC
Q 009569 304 --DGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDK 381 (532)
Q Consensus 304 --~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 381 (532)
...+...+.+.+|...|..++|+|++.++++++.|..+++||+..|.....+..|...+..++|.|-+.++++-+.|.
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCc
Confidence 223566778889999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred cEEEEECCCCeEEEe---------------------ecCc--cCceEEEEEeeCCCEEEEEEC----C-----CeEEEEE
Q 009569 382 SICLWDLDGRELESW---------------------KGQK--TLRISDMAITDDGKRIISICR----E-----AAILLLD 429 (532)
Q Consensus 382 ~i~iwd~~~~~~~~~---------------------~~~~--~~~v~~~~~s~~~~~l~~~~~----d-----g~I~iwd 429 (532)
..+.+.+........ .... ......++|+|+|.++++.+. + +..++|+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfs 267 (434)
T KOG1009|consen 188 HPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFS 267 (434)
T ss_pred ccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeec
Confidence 777666643221111 0000 013456789999999887542 2 2345565
Q ss_pred CCCCc---eeeeecCCceeEEEEcC------------------CCCEEEEEecCCeEEEEecCCCCcceeEEe-ccccce
Q 009569 430 REANF---ERWIEEEEVITSFSLSK------------------DNKYLLVNLINQEIHLWSIESDPKLVSRYK-GHKRAR 487 (532)
Q Consensus 430 ~~~~~---~~~~~~~~~i~~~~~sp------------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~ 487 (532)
..... ..+.....+...+.|+| -+-.+++++ .+.|++||..+. .++.... -|-..
T Consensus 268 rk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~-~P~~~v~nihy~~- 344 (434)
T KOG1009|consen 268 RKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTL-EPLAVVDNIHYSA- 344 (434)
T ss_pred cccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccc-cceEEEeeeeeee-
Confidence 44332 22223334444455444 122344444 678999999886 5555443 33334
Q ss_pred EEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCCce
Q 009569 488 FVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPFAK 522 (532)
Q Consensus 488 ~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~~~ 522 (532)
+...+| ++||.+++..|.||...+-.++..++.
T Consensus 345 -iTDiaw-s~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 345 -ITDIAW-SDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred -ecceee-cCCCcEEEEeccCCceEEEEEcchhcc
Confidence 355777 999999999999999888777765543
No 152
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=2.8e-19 Score=168.28 Aligned_cols=251 Identities=13% Similarity=0.143 Sum_probs=189.9
Q ss_pred ceeEEcccccccEEEEEEcc-CCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcE
Q 009569 263 QTLQILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (532)
Q Consensus 263 ~~~~~l~~h~~~V~~v~~s~-~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 341 (532)
.-+..+..|..+|.++.|+| +-..+++.|.||+|++-|++.. ....+..+..-...+.++.|+.+...++.+..=|..
T Consensus 225 d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~-i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f 303 (498)
T KOG4328|consen 225 DGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGN-ISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNF 303 (498)
T ss_pred CceEEeccCCccccceEecCCChhheeeeccCceeeeeeecch-hhHHHhhcCccceeeeeccccCCCccEEEeecccce
Confidence 44667888999999999999 5568999999999999999853 333333443445567888898888888888887899
Q ss_pred EEEECCCCcE-EEEeeccCCceEEEEEeeC-CCeEEEEeCCCcEEEEECCC---Ce--EEEeecCccCceEEEEEeeCCC
Q 009569 342 RRWDVNSGEC-LHVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDG---RE--LESWKGQKTLRISDMAITDDGK 414 (532)
Q Consensus 342 ~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~---~~--~~~~~~~~~~~v~~~~~s~~~~ 414 (532)
.+||.+++.. ...+..|...|++++++|- ..++++++.|++.+|||++. +. +... ..|...|.+..|||.+-
T Consensus 304 ~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst-~~HrrsV~sAyFSPs~g 382 (498)
T KOG4328|consen 304 NVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLST-LPHRRSVNSAYFSPSGG 382 (498)
T ss_pred EEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceec-ccccceeeeeEEcCCCC
Confidence 9999988765 6667778889999999994 55688999999999999974 22 2222 34445899999999988
Q ss_pred EEEEEECCCeEEEEECC----CCc-eeeeecCCc------eeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEecc
Q 009569 415 RIISICREAAILLLDRE----ANF-ERWIEEEEV------ITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483 (532)
Q Consensus 415 ~l~~~~~dg~I~iwd~~----~~~-~~~~~~~~~------i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 483 (532)
.|++.+.|..|+|||.. ... ...+.|... .....|.|+..++++|..-..|-|+|-..+ +.+..+...
T Consensus 383 tl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~-q~v~el~~P 461 (498)
T KOG4328|consen 383 TLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG-QMVCELHDP 461 (498)
T ss_pred ceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC-EEeeeccCc
Confidence 89999999999999984 222 334444322 345689999999999999999999998776 777776555
Q ss_pred cc-ceEEEEEccCCCCCc-EEEEEeCCCcEEEEeCCC
Q 009569 484 KR-ARFVIRSCFGGFEQA-FIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 484 ~~-~~~~i~~~~~s~d~~-~l~sgs~dg~i~iw~~~~ 518 (532)
.. .+..+ ..| +|-+. +++.++..|.|+||.-+.
T Consensus 462 ~~~tI~~v-n~~-HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 462 ESSTIPSV-NEF-HPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred cccccccc-eee-cccccceeccCCccceEEEEecCC
Confidence 44 32222 233 88887 555556689999997554
No 153
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3.5e-19 Score=160.27 Aligned_cols=204 Identities=20% Similarity=0.294 Sum_probs=154.6
Q ss_pred EEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcE-----EEEeeccCCceEEEEEeeCCCeEEEEe-CCCcEE
Q 009569 311 HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC-----LHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSIC 384 (532)
Q Consensus 311 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~ 384 (532)
..+++|.+.|++++|+.||++|++++.|++|++|+++.... ++.- -.-+..+.+.|.||.+-+++.. ...+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 45789999999999999999999999999999999976432 2111 1123568899999988777655 445799
Q ss_pred EEECCCCe-----E-------EEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc-eeeeecCCceeEEEEcC
Q 009569 385 LWDLDGRE-----L-------ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSK 451 (532)
Q Consensus 385 iwd~~~~~-----~-------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~-~~~~~~~~~i~~~~~sp 451 (532)
+|.+..++ . ..+...|.-.+.++-...++++|++++.|..|.+||++... ...-......+..+.||
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP 238 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSP 238 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCC
Confidence 99874211 1 11222233356666677788999999999999999999544 33344455667789999
Q ss_pred CCCEEEEEecCCeEEEEecCCC-------CcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 452 DNKYLLVNLINQEIHLWSIESD-------PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 452 ~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
+|+++++++..-.|++|.+--. -..+..++||...+ ...+| +++...+++.|.||+++|||.+-
T Consensus 239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV--~~~aF-sn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAV--LAAAF-SNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhe--eeeee-CCCcceeEEEecCCcEEEeeccc
Confidence 9999999999999999997321 13455688999884 45777 99999999999999999999863
No 154
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2e-20 Score=194.20 Aligned_cols=246 Identities=15% Similarity=0.229 Sum_probs=193.3
Q ss_pred cccEEEEEEccCCCE----EEEEeCCCeEEEEEeec---CCeeEEEEEeecCCCCeEEEEeCCCC-CEEEEeeCCCcEEE
Q 009569 272 SDEVWFLQFSHDGKY----LASSSKDQSAIIWEVKE---DGQVSLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRR 343 (532)
Q Consensus 272 ~~~V~~v~~s~~g~~----las~s~dg~i~iwd~~~---~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~i 343 (532)
....+.++|.+.|.. ||.|..||.|.+||... +.....+.+...|++.|..+.|++.. +.|++|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 346778999997765 88899999999999875 44555677788999999999999965 59999999999999
Q ss_pred EECCCCcEEEEee--ccCCceEEEEEeeC-CCeEEEEeCCCcEEEEECCCCe-EEEeecCcc-CceEEEEEeeCCC-EEE
Q 009569 344 WDVNSGECLHVYE--KTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRE-LESWKGQKT-LRISDMAITDDGK-RII 417 (532)
Q Consensus 344 wd~~~~~~~~~~~--~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~-~~v~~~~~s~~~~-~l~ 417 (532)
||+..-+....+. .....|.+++|+.. ...|++++.+|.+.|||++.++ +..+..... ..+..++|+|+.. .++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 9998755444432 23567999999874 4557788889999999998653 333333222 3588999999764 566
Q ss_pred EEECC---CeEEEEECCCCc---eeeeecCCceeEEEEcCCC-CEEEEEecCCeEEEEecCCCCcceeEEeccccceEEE
Q 009569 418 SICRE---AAILLLDREANF---ERWIEEEEVITSFSLSKDN-KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVI 490 (532)
Q Consensus 418 ~~~~d---g~I~iwd~~~~~---~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i 490 (532)
+++.| -.|.+||++... ..+..|...|.++.|++.+ ++|++++.|+.|.+|+..++ +.+..+....+. +.
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg-Evl~~~p~~~nW--~f 300 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG-EVLGELPAQGNW--CF 300 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc-eEeeecCCCCcc--ee
Confidence 66655 359999998765 5667999999999999966 89999999999999999998 888888875554 34
Q ss_pred EEccCCCCCcEEEEEeCCCcEEEEeCCCCC
Q 009569 491 RSCFGGFEQAFIASGSEDSQVNIFLSFSPF 520 (532)
Q Consensus 491 ~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~ 520 (532)
.+.|...+-..+++++-||.|-|+.+.+..
T Consensus 301 dv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 301 DVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeeecCCCcchhhhheeccceeeeeeecCC
Confidence 455523344588899999999999998765
No 155
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.83 E-value=2.1e-19 Score=165.25 Aligned_cols=225 Identities=16% Similarity=0.259 Sum_probs=168.8
Q ss_pred cCCCCCceeeccCCc---------cCCCCCcceeEEcccccccEEEEEEccCC-CEEEEEeCCCeEEEEEeecCCeeE-E
Q 009569 241 NTSDSDFSLYSDHQC---------GRNRIPSQTLQILEAHSDEVWFLQFSHDG-KYLASSSKDQSAIIWEVKEDGQVS-L 309 (532)
Q Consensus 241 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~h~~~V~~v~~s~~g-~~las~s~dg~i~iwd~~~~~~~~-~ 309 (532)
-+..+.+.+|..... .......+++.++.+|.+.=+.++|||-. ..|++|.--+.|++|...++ .+. -
T Consensus 171 wse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g-~W~vd 249 (440)
T KOG0302|consen 171 WSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTG-SWKVD 249 (440)
T ss_pred ecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccC-ceeec
Confidence 344566677754321 11234457899999999999999999932 24788877888999999874 332 2
Q ss_pred EEEeecCCCCeEEEEeCCCC-CEEEEeeCCCcEEEEECCCC---cEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEE
Q 009569 310 KHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSG---ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICL 385 (532)
Q Consensus 310 ~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 385 (532)
...+.+|+..|-.++|||.. ..|++||.||+|+|||++.+ .++.+ +.|.+.|+.+.|+.+-.+|++|+.||+++|
T Consensus 250 ~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~i 328 (440)
T KOG0302|consen 250 QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSI 328 (440)
T ss_pred CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEE
Confidence 35577899999999999964 68999999999999999988 34444 788999999999998889999999999999
Q ss_pred EECCC---CeEEEeecCccCceEEEEEeeC-CCEEEEEECCCeEEEEECCCCc------------------eeeeec--C
Q 009569 386 WDLDG---RELESWKGQKTLRISDMAITDD-GKRIISICREAAILLLDREANF------------------ERWIEE--E 441 (532)
Q Consensus 386 wd~~~---~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~I~iwd~~~~~------------------~~~~~~--~ 441 (532)
||++. +.....+..|..+|+++.|+|. ...|++++.|.+|.+||+.... +.++-| +
T Consensus 329 wDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQ 408 (440)
T KOG0302|consen 329 WDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQ 408 (440)
T ss_pred EEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecch
Confidence 99985 2233333445559999999995 4578888999999999986432 122233 3
Q ss_pred CceeEEEEcCCC-CEEEEEecCCeEEEE
Q 009569 442 EVITSFSLSKDN-KYLLVNLINQEIHLW 468 (532)
Q Consensus 442 ~~i~~~~~sp~~-~~l~~~~~dg~i~iw 468 (532)
..+..+.|++.- .++++.+.|| +.||
T Consensus 409 ke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 409 KEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred hHhhhheeccCCCCeEEEecccc-eeEE
Confidence 457788888854 5677777777 4444
No 156
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.83 E-value=2.9e-19 Score=174.90 Aligned_cols=257 Identities=18% Similarity=0.312 Sum_probs=197.2
Q ss_pred CCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEE
Q 009569 244 DSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTV 323 (532)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l 323 (532)
+..+.+|+.. .+..++++++|.+.|+|++|+.||+.+|+|+.|..|.+|+-.-.+.+ . -.|+..|.|+
T Consensus 32 g~rlliyD~n-------dG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L----k-YSH~D~IQCM 99 (1081)
T KOG1538|consen 32 GSRLLVYDTS-------DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL----K-YSHNDAIQCM 99 (1081)
T ss_pred CCEEEEEeCC-------CcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee----e-eccCCeeeEe
Confidence 3345555443 36788999999999999999999999999999999999987644322 1 2599999999
Q ss_pred EeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEee--cCcc
Q 009569 324 SWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK--GQKT 401 (532)
Q Consensus 324 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~ 401 (532)
.|+|-...|++|+-. ..-+|....... ...+ ....+.+++|..||.+++.|-.||+|.+-+-.+.+...+. ++..
T Consensus 100 sFNP~~h~LasCsLs-dFglWS~~qK~V-~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~N 176 (1081)
T KOG1538|consen 100 SFNPITHQLASCSLS-DFGLWSPEQKSV-SKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSN 176 (1081)
T ss_pred ecCchHHHhhhcchh-hccccChhhhhH-Hhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCC
Confidence 999999999999875 466888754332 2221 3557889999999999999999999999876654433332 3445
Q ss_pred CceEEEEEeeCC-----CEEEEEECCCeEEEEECCCCc-eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCc
Q 009569 402 LRISDMAITDDG-----KRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK 475 (532)
Q Consensus 402 ~~v~~~~~s~~~-----~~l~~~~~dg~I~iwd~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~ 475 (532)
.+|.+++|+|.. ..+++.....++.+|.+.... ..-....-...|+++.++|.|++.|+.|+.+++|.-. + -
T Consensus 177 spiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-G-v 254 (1081)
T KOG1538|consen 177 SPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-G-V 254 (1081)
T ss_pred CCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec-C-e
Confidence 599999999963 467888888888888887654 2233344557799999999999999999999999744 3 4
Q ss_pred ceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCC
Q 009569 476 LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPF 520 (532)
Q Consensus 476 ~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~ 520 (532)
.+.+.......++.+ .. .|++++++.|+.||+|..|++....
T Consensus 255 rLGTvg~~D~WIWtV--~~-~PNsQ~v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 255 RLGTVGEQDSWIWTV--QA-KPNSQYVVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred EEeeccccceeEEEE--EE-ccCCceEEEEEccCeeehhhhHHhH
Confidence 666665555554443 33 8999999999999999999986543
No 157
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=3.8e-19 Score=160.84 Aligned_cols=251 Identities=19% Similarity=0.271 Sum_probs=197.3
Q ss_pred EcccccccEEEEEEcc-----CCCEEEEEeCCCeEEEEEeecCCeeEEEEEee--cCCCCeEEEEeCCC----CCEEEEe
Q 009569 267 ILEAHSDEVWFLQFSH-----DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS--GHRKPVFTVSWSPN----DHQLLTC 335 (532)
Q Consensus 267 ~l~~h~~~V~~v~~s~-----~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~~----~~~l~s~ 335 (532)
..++|+.+|..++|++ .-..+|+++. ..+.+|+...++....++.+. .|......++|+-| ..+++.+
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 4568999999999986 2245666654 578999988665444444443 46777888888764 3488999
Q ss_pred eCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeC-CCeEEEEeCCCcEEEEECCCCeEEEeec---CccCceEEEEEee
Q 009569 336 GQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRELESWKG---QKTLRISDMAITD 411 (532)
Q Consensus 336 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~ 411 (532)
+.-|.|+|.|+.++++...+.+|+..|..+.++|+ .+++++++.|.+|++|++++.......+ .|...|.++.|++
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~ 191 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL 191 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC
Confidence 99999999999999999999999999999999995 4688899999999999999887766654 4556899999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCc------e------------------------eeeecCCceeEEEEcCCCCEEEEEec
Q 009569 412 DGKRIISICREAAILLLDREANF------E------------------------RWIEEEEVITSFSLSKDNKYLLVNLI 461 (532)
Q Consensus 412 ~~~~l~~~~~dg~I~iwd~~~~~------~------------------------~~~~~~~~i~~~~~sp~~~~l~~~~~ 461 (532)
+|.+|++++.|..|.+|++...+ . +...|...|.|+.|- |.++++-+.
T Consensus 192 ~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksc 269 (385)
T KOG1034|consen 192 DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSC 269 (385)
T ss_pred CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeeccc
Confidence 99999999999999999998433 0 001244445555554 678999888
Q ss_pred CCeEEEEecCCC-------------CcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCCc
Q 009569 462 NQEIHLWSIESD-------------PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPFA 521 (532)
Q Consensus 462 dg~i~iwd~~~~-------------~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~~ 521 (532)
++.|..|..-.- ...+.++......++.++..| .|-++.||.|...|+|++||++....
T Consensus 270 enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~-d~~~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 270 ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAF-DPWQKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred CceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEee-cHHHHHHhhccCCCcEEEEECCCCCC
Confidence 999999987211 123445566667778888888 89999999999999999999987654
No 158
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.83 E-value=5.2e-19 Score=157.21 Aligned_cols=249 Identities=18% Similarity=0.300 Sum_probs=188.7
Q ss_pred EEcccccccEEEEEEcc-CCCEEEEEeCC-------CeEEEEEeecCCe------eEEEEEee-cCCCCeEEEEeCCCCC
Q 009569 266 QILEAHSDEVWFLQFSH-DGKYLASSSKD-------QSAIIWEVKEDGQ------VSLKHRLS-GHRKPVFTVSWSPNDH 330 (532)
Q Consensus 266 ~~l~~h~~~V~~v~~s~-~g~~las~s~d-------g~i~iwd~~~~~~------~~~~~~~~-~h~~~v~~l~~s~~~~ 330 (532)
..+..|.++|+.++-+| +.+.|+|+..+ ..+.||.+..... ++++..+. .+-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 34666889999999999 66777776542 2477999874321 22233333 4556899999999999
Q ss_pred EEEEeeCCCcEEEEECCCCcE-EEEee-----ccCCceEEEEEee--CCCeEEEEeCCCcEEEEECCC-CeEEEeecCcc
Q 009569 331 QLLTCGQEEAIRRWDVNSGEC-LHVYE-----KTGVGLISCGWFL--DGGGIFAGMTDKSICLWDLDG-RELESWKGQKT 401 (532)
Q Consensus 331 ~l~s~~~dg~i~iwd~~~~~~-~~~~~-----~~~~~i~~~~~~~--~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~ 401 (532)
.+++.. |..|.+|++..+.. +..+. .+....++-+|+| +++.+++. .|+++..||+++ .+...+...|.
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHg 214 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHG 214 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhc
Confidence 998876 78999999987765 33222 2355678889998 67777664 579999999997 34455566676
Q ss_pred CceEEEEEeeCCC-EEEEEECCCeEEEEECCCCc---eeeeecCCceeEEEEcCC-CCEEEEEecCCeEEEEecCCC---
Q 009569 402 LRISDMAITDDGK-RIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKD-NKYLLVNLINQEIHLWSIESD--- 473 (532)
Q Consensus 402 ~~v~~~~~s~~~~-~l~~~~~dg~I~iwd~~~~~---~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~i~iwd~~~~--- 473 (532)
..|.++.|+|+.. +|++++.||.|++||.+..+ ..+.+|...|.++.|+|. .++|++|+.|..|.+|...+-
T Consensus 215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE 294 (370)
T KOG1007|consen 215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSE 294 (370)
T ss_pred ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccc
Confidence 7899999999876 67888899999999999877 667789999999999995 478889999999999976431
Q ss_pred -------------------------CcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 474 -------------------------PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 474 -------------------------~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
...+.+|..|...+|. +.|.+.|.-.+|+-|.||++.|=++..
T Consensus 295 ~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~--~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 295 QQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYA--LAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred cccccccccccCcchhhHHhcccccccccccccccccceEE--EeeccCCCeeEEEeccCceEEeecCCh
Confidence 0134567788888776 556466777888999999999877654
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=4.7e-19 Score=168.07 Aligned_cols=240 Identities=12% Similarity=0.123 Sum_probs=186.5
Q ss_pred cEEEEEEccCCC-EEEEEeCCCeEEEEEeecC-CeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcE
Q 009569 274 EVWFLQFSHDGK-YLASSSKDQSAIIWEVKED-GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351 (532)
Q Consensus 274 ~V~~v~~s~~g~-~las~s~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 351 (532)
.+.++.|+.... .+|+.+.|..+++|.-... ..+..+....+. .-.|++......|+++|+..++|+|||++...+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~ 113 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLI 113 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHH
Confidence 388999988664 2344567888999976522 112233333333 334555555568999999999999999998778
Q ss_pred EEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCc-cCceEEEEEeeCCC-EEEEEECCCeEEEEE
Q 009569 352 LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK-TLRISDMAITDDGK-RIISICREAAILLLD 429 (532)
Q Consensus 352 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~-~l~~~~~dg~I~iwd 429 (532)
.+.++.|...|+++.++....+|++++..|.|.|..+.++.....+.+. ...|.-+.|+|..+ +|.+++.+|.|.+||
T Consensus 114 hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwD 193 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWD 193 (673)
T ss_pred hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEe
Confidence 8889999999999999999999999999999999999887665555544 33677899999776 466788999999999
Q ss_pred CCCCc---eeeeecCCceeEEEEcCCC-CEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEE
Q 009569 430 REANF---ERWIEEEEVITSFSLSKDN-KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG 505 (532)
Q Consensus 430 ~~~~~---~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sg 505 (532)
+.... .....|..+...|+|+|.. .+|++.+.|..|++||+++. ....++..... ...+.| +++|.+|+.|
T Consensus 194 v~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~-~s~~~l~y~~P---lstvaf-~~~G~~L~aG 268 (673)
T KOG4378|consen 194 VQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ-ASTDRLTYSHP---LSTVAF-SECGTYLCAG 268 (673)
T ss_pred ccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc-cccceeeecCC---cceeee-cCCceEEEee
Confidence 98776 3445789999999999965 67778899999999999976 56655554332 133566 9999999999
Q ss_pred eCCCcEEEEeCCCCC
Q 009569 506 SEDSQVNIFLSFSPF 520 (532)
Q Consensus 506 s~dg~i~iw~~~~~~ 520 (532)
+..|.|+.||++..+
T Consensus 269 ~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 269 NSKGELIAYDMRSTK 283 (673)
T ss_pred cCCceEEEEecccCC
Confidence 999999999998754
No 160
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.1e-17 Score=164.85 Aligned_cols=266 Identities=13% Similarity=0.178 Sum_probs=200.9
Q ss_pred cccccCCCCCceeeccCCccCCCCCcceeEEcccc-cccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeec
Q 009569 237 CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAH-SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG 315 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~ 315 (532)
++..+-.++.+.+|..... --+..++.++ ...|.+++|++ +..|.+.+.+|.|.-||+.+. +....+..
T Consensus 39 ~lAvsRt~g~IEiwN~~~~------w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~l---k~~~~~d~ 108 (691)
T KOG2048|consen 39 QLAVSRTDGNIEIWNLSNN------WFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTL---KQKYNIDS 108 (691)
T ss_pred ceeeeccCCcEEEEccCCC------ceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccC---ceeEEecC
Confidence 3444556677777765431 1233345555 45899999994 556888889999999999876 45566777
Q ss_pred CCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEE--EeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeE
Q 009569 316 HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH--VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL 393 (532)
Q Consensus 316 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 393 (532)
..++|++++.+|.+..++.|+.||.+..++...++... .+....+.+.++.|+|++..+++|+.||.|++||...+..
T Consensus 109 ~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t 188 (691)
T KOG2048|consen 109 NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQT 188 (691)
T ss_pred CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCce
Confidence 88999999999999999999999988888887776543 3444578999999999999999999999999999976443
Q ss_pred EEe--------ecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCC
Q 009569 394 ESW--------KGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQ 463 (532)
Q Consensus 394 ~~~--------~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg 463 (532)
... ......-|+++.|-.++ .|++|...|+|.+||...+. ..+..|...|.+++..+++.++++++.|+
T Consensus 189 ~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~ 267 (691)
T KOG2048|consen 189 LHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDP 267 (691)
T ss_pred EEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCC
Confidence 221 11122257788887654 79999999999999999888 67778999999999999999999999999
Q ss_pred eEEEEecCCCCc---ceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 464 EIHLWSIESDPK---LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 464 ~i~iwd~~~~~~---~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
.|..|...+... .......|...+..+.. .+ ..+++|+.|..+.+=....
T Consensus 268 ~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av---~~--~~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 268 KIIQYSLTTNKSEWVINSRRDLHAHDVRSMAV---IE--NALISGGRDFTLAICSSRE 320 (691)
T ss_pred ceEEEEecCCccceeeeccccCCcccceeeee---ec--ceEEecceeeEEEEccccc
Confidence 999888876633 22334455555333322 22 3889999999888765544
No 161
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=3.5e-18 Score=158.06 Aligned_cols=235 Identities=14% Similarity=0.247 Sum_probs=174.3
Q ss_pred CCCEEEE---EeCCCeEEEEEeecCCee-EEEEEeecCCCCeEEEEeCC-CCCEEEEeeCCCcEEEEECCCC-------c
Q 009569 283 DGKYLAS---SSKDQSAIIWEVKEDGQV-SLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNSG-------E 350 (532)
Q Consensus 283 ~g~~las---~s~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~-------~ 350 (532)
+.++||. ++..|...+.-+..-+.+ .....+.+|+++|..++|+| +...||+||.|.+|.||.+-.+ +
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte 122 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE 122 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc
Confidence 4455554 334445555544422221 22345679999999999999 6678999999999999999543 4
Q ss_pred EEEEeeccCCceEEEEEee-CCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEE
Q 009569 351 CLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429 (532)
Q Consensus 351 ~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd 429 (532)
.+..+.+|...|--+.|+| -.+.|++++.|.+|.+||+.+++...... |...|+++.|+.||.++++.+.|..|+|||
T Consensus 123 pvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~d 201 (472)
T KOG0303|consen 123 PVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVID 201 (472)
T ss_pred ceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEc
Confidence 5678889999999999999 45778899999999999999877555555 555999999999999999999999999999
Q ss_pred CCCCc--eeeeecC-CceeEEEEcCCCCEEEEEe---cCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEE
Q 009569 430 REANF--ERWIEEE-EVITSFSLSKDNKYLLVNL---INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIA 503 (532)
Q Consensus 430 ~~~~~--~~~~~~~-~~i~~~~~sp~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~ 503 (532)
.++++ ..-..|. .....+-|-.++..+-+|- ++.++-+||..+-.+++....-.... .+-+-|+.+|...|+
T Consensus 202 pr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn--Gvl~PFyD~dt~ivY 279 (472)
T KOG0303|consen 202 PRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN--GVLLPFYDPDTSIVY 279 (472)
T ss_pred CCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCC--ceEEeeecCCCCEEE
Confidence 99998 2223444 3456677888888555553 36789999987765554433333332 234667799988887
Q ss_pred EEe-CCCcEEEEeCCCCC
Q 009569 504 SGS-EDSQVNIFLSFSPF 520 (532)
Q Consensus 504 sgs-~dg~i~iw~~~~~~ 520 (532)
.++ .|+.|+-|.+.+..
T Consensus 280 l~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 280 LCGKGDSSIRYFEITNEP 297 (472)
T ss_pred EEecCCcceEEEEecCCC
Confidence 554 59999999998754
No 162
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=3e-19 Score=172.33 Aligned_cols=250 Identities=15% Similarity=0.184 Sum_probs=191.0
Q ss_pred EcccccccEEEEEEccCCCEEEEEeCCCeEEEEEee-----cCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcE
Q 009569 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVK-----EDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (532)
Q Consensus 267 ~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~-----~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 341 (532)
++..|.+.|..++|.|....|++|+.||++.+|++. ....++++.+|.+|.++|.|++..+++..+++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 677899999999999999999999999999999993 234567889999999999999999999999999999999
Q ss_pred EEEECCCC----------cEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCcc-CceEEEEEe
Q 009569 342 RRWDVNSG----------ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKT-LRISDMAIT 410 (532)
Q Consensus 342 ~iwd~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s 410 (532)
+.|++... .....+.+|.+.++.+++++....|++++.||+++.|+........+..... +....+.+.
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ 448 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRT 448 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeec
Confidence 99966321 2335678999999999999999999999999999999987655432322211 133444443
Q ss_pred eCC-CEEEEEECCCeEEEEECCCCc-eeeee--------cCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEE
Q 009569 411 DDG-KRIISICREAAILLLDREANF-ERWIE--------EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRY 480 (532)
Q Consensus 411 ~~~-~~l~~~~~dg~I~iwd~~~~~-~~~~~--------~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 480 (532)
... ...++...-+.-.+++..... ..+.. ....+.-+.++|...+.+++..|+.|+++|..++ .++...
T Consensus 449 ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~-~~l~s~ 527 (577)
T KOG0642|consen 449 SSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG-KILHSM 527 (577)
T ss_pred cchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc-ccchhe
Confidence 322 122222222222233333322 11111 1245778899999999999999999999999998 899999
Q ss_pred eccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCC
Q 009569 481 KGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPF 520 (532)
Q Consensus 481 ~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~ 520 (532)
..|...+..+ ++ .|+|.+|++|+.||.+.+|.+....
T Consensus 528 ~a~~~svtsl--ai-~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 528 VAHKDSVTSL--AI-DPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred eeccceecce--ee-cCCCceEEeecCCceeehhhccchh
Confidence 9998875554 34 8999999999999999999997653
No 163
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.2e-18 Score=163.66 Aligned_cols=233 Identities=17% Similarity=0.234 Sum_probs=172.9
Q ss_pred cccccCCCCCceeeccCCccCCCCCc---------------ceeEEcccccccEEEEEEccC-CCEEEEEeCCCeEEEEE
Q 009569 237 CLFHNTSDSDFSLYSDHQCGRNRIPS---------------QTLQILEAHSDEVWFLQFSHD-GKYLASSSKDQSAIIWE 300 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~h~~~V~~v~~s~~-g~~las~s~dg~i~iwd 300 (532)
.+..++.+..|.+|+...... .+|. +.-..-++|++.|.+++|+.+ .+.||+||.|.+|++||
T Consensus 194 yvAiGtmdp~IeIWDLDI~d~-v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD 272 (463)
T KOG0270|consen 194 YVAIGTMDPEIEIWDLDIVDA-VLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWD 272 (463)
T ss_pred eEEEeccCceeEEeccccccc-cccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEE
Confidence 444566777888997553221 1111 111123479999999999885 45889999999999999
Q ss_pred eecCCeeEEEEEeecCCCCeEEEEeCCC-CCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeC-CCeEEEEe
Q 009569 301 VKEDGQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD-GGGIFAGM 378 (532)
Q Consensus 301 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~ 378 (532)
+.++ ++..++..|.+.|.++.|+|. ...|++|+.|++|.+.|.+...+....-...+.|-.+.|.|. ...+++++
T Consensus 273 ~~~g---~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 273 VDTG---KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred cCCC---CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence 9987 566778889999999999995 679999999999999999854333222234667889999985 45677788
Q ss_pred CCCcEEEEECCCC-eEEEeecCccCceEEEEEeeCC-CEEEEEECCCeEEEEECCCCce-eeeecC---CceeEEEEcCC
Q 009569 379 TDKSICLWDLDGR-ELESWKGQKTLRISDMAITDDG-KRIISICREAAILLLDREANFE-RWIEEE---EVITSFSLSKD 452 (532)
Q Consensus 379 ~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~I~iwd~~~~~~-~~~~~~---~~i~~~~~sp~ 452 (532)
.||+++-+|++.. ........|...|.++++++.. .++++++.|+.|++|++..... ....|. +...|+++.|+
T Consensus 350 ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~ 429 (463)
T KOG0270|consen 350 DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPD 429 (463)
T ss_pred CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCC
Confidence 9999999999853 3333344555699999999854 5788999999999999977652 222221 23667788887
Q ss_pred C-CEEEEEecCCeEEEEecCCC
Q 009569 453 N-KYLLVNLINQEIHLWSIESD 473 (532)
Q Consensus 453 ~-~~l~~~~~dg~i~iwd~~~~ 473 (532)
- -+++.|+..+.++|||+.+.
T Consensus 430 ~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 430 VAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred cceEEEecCccceEEEeecccC
Confidence 5 45677888888999999887
No 164
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2e-18 Score=157.09 Aligned_cols=186 Identities=16% Similarity=0.264 Sum_probs=148.7
Q ss_pred CEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCC--CCCEEEEeeCCCcEEEEECCCCcEEEEe--eccC-
Q 009569 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQEEAIRRWDVNSGECLHVY--EKTG- 359 (532)
Q Consensus 285 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~- 359 (532)
+.+|++-.+|.|++||..++ ..+..++++...++.+.|.. ....+.+|+.||+|++||+++......+ ..+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg---~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~ 117 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG---QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSG 117 (376)
T ss_pred eeEEEEecCCeEEEEeccch---hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCC
Confidence 56888889999999999886 45577888888888888877 4578999999999999999887654433 3343
Q ss_pred CceEEEEEeeCCCeEEEEe----CCCcEEEEECCCC-e-EEEeecCccCceEEEEEee-CCCEEEEEECCCeEEEEECCC
Q 009569 360 VGLISCGWFLDGGGIFAGM----TDKSICLWDLDGR-E-LESWKGQKTLRISDMAITD-DGKRIISICREAAILLLDREA 432 (532)
Q Consensus 360 ~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~-~-~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~I~iwd~~~ 432 (532)
.+..+++.+..++.+++|+ .+-.+.+||.+.. + +..+...|...|+++.|+| +.+.|++|+.||.|.+||+..
T Consensus 118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred CcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence 4566777666777788775 4668999999853 3 6777777888999999999 567999999999999999987
Q ss_pred Cc-----eeeeecCCceeEEEEcCCC-CEEEEEecCCeEEEEecCCC
Q 009569 433 NF-----ERWIEEEEVITSFSLSKDN-KYLLVNLINQEIHLWSIESD 473 (532)
Q Consensus 433 ~~-----~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~i~iwd~~~~ 473 (532)
.. ...+.+...|.++.|..++ +.|.+-+..++..+|++..+
T Consensus 198 d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 198 DNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred CcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence 54 5566788889999999877 45777777888999988753
No 165
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.80 E-value=1.5e-16 Score=157.06 Aligned_cols=274 Identities=9% Similarity=0.126 Sum_probs=180.6
Q ss_pred ccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEe-CCCeEEEEEeecCCeeEEEEEeecCCC
Q 009569 240 HNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSS-KDQSAIIWEVKEDGQVSLKHRLSGHRK 318 (532)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s-~dg~i~iwd~~~~~~~~~~~~~~~h~~ 318 (532)
.+..++.+++|+-.+.. ....++.+. +.+....++++|++++|++++ .++.|.+|++...+.+....... ...
T Consensus 7 ~~~~~~~I~~~~~~~~g----~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~ 80 (330)
T PRK11028 7 ASPESQQIHVWNLNHEG----ALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPG 80 (330)
T ss_pred EcCCCCCEEEEEECCCC----ceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCC
Confidence 44556788888753211 113444454 345677899999999987654 58899999997444444333332 233
Q ss_pred CeEEEEeCCCCCEEEEeeC-CCcEEEEECCC-C---cEEEEeeccCCceEEEEEeeCCCeEEEEe-CCCcEEEEECCC-C
Q 009569 319 PVFTVSWSPNDHQLLTCGQ-EEAIRRWDVNS-G---ECLHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDLDG-R 391 (532)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~-~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~ 391 (532)
....++|+|+++++++++. ++.|.+|++.+ + +.+..+. +...+.+++++|+++++++++ .++.|.+||+++ +
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 5678999999999988875 78999999964 3 2223232 223467788999999886655 568999999975 3
Q ss_pred eEEE-----eecCccCceEEEEEeeCCCEEEEEEC-CCeEEEEECCCC--ce----eeee------cCCceeEEEEcCCC
Q 009569 392 ELES-----WKGQKTLRISDMAITDDGKRIISICR-EAAILLLDREAN--FE----RWIE------EEEVITSFSLSKDN 453 (532)
Q Consensus 392 ~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~I~iwd~~~~--~~----~~~~------~~~~i~~~~~sp~~ 453 (532)
.+.. ...........++|+|+|++++++.. ++.|.+||+... .. .... +......+.++|++
T Consensus 160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred cccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 2211 11112235678999999999988875 899999999742 21 1111 11123368899999
Q ss_pred CEEEEEec-CCeEEEEecCCCCcc---eeEEeccccceEEEEEccCCCCCcEEEEEeC-CCcEEEEeCC--CCCceee
Q 009569 454 KYLLVNLI-NQEIHLWSIESDPKL---VSRYKGHKRARFVIRSCFGGFEQAFIASGSE-DSQVNIFLSF--SPFAKKI 524 (532)
Q Consensus 454 ~~l~~~~~-dg~i~iwd~~~~~~~---~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~-dg~i~iw~~~--~~~~~~~ 524 (532)
++++++.. ++.|.+|++...... +........+ ..+.+ +|+|++|++++. +++|.+|+++ ++....+
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p---~~~~~-~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~ 313 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQP---RGFNI-DHSGKYLIAAGQKSHHISVYEIDGETGLLTEL 313 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccC---CceEE-CCCCCEEEEEEccCCcEEEEEEcCCCCcEEEc
Confidence 99999864 689999999654222 2222221111 22445 899999998775 8999999875 4444333
No 166
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=1.8e-17 Score=149.76 Aligned_cols=270 Identities=16% Similarity=0.188 Sum_probs=190.8
Q ss_pred hcccccccccCCCCCceeeccCCccC-------CCCCcceeEEcccccccEEEEEEc-------cCCCEEEEEeCCCeEE
Q 009569 232 VQRDSCLFHNTSDSDFSLYSDHQCGR-------NRIPSQTLQILEAHSDEVWFLQFS-------HDGKYLASSSKDQSAI 297 (532)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~h~~~V~~v~~s-------~~g~~las~s~dg~i~ 297 (532)
.....|+++.+.+..+.+|.-..-.. ..++....... .....|...+|- |+..++|+.+.+.-|+
T Consensus 58 SPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh 136 (406)
T KOG2919|consen 58 SPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIH 136 (406)
T ss_pred CCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe-ccCCEEEEEEeeeccccCCCccceeeeccccCcee
Confidence 34456888888888888876432111 11111111111 123567777775 5778999999999999
Q ss_pred EEEeecCCeeEEEEEeecCCC---CeEEEEeCCCCCEEEEeeCCCcEEEEEC-CCCcEEEE---ee----ccCCceEEEE
Q 009569 298 IWEVKEDGQVSLKHRLSGHRK---PVFTVSWSPNDHQLLTCGQEEAIRRWDV-NSGECLHV---YE----KTGVGLISCG 366 (532)
Q Consensus 298 iwd~~~~~~~~~~~~~~~h~~---~v~~l~~s~~~~~l~s~~~dg~i~iwd~-~~~~~~~~---~~----~~~~~i~~~~ 366 (532)
+||.-++.. +.....-.|.. ...+++|+|||.+|++ +...+|+++|+ +.|..... +. +..+-+.+++
T Consensus 137 ~wdaftG~l-raSy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a 214 (406)
T KOG2919|consen 137 LWDAFTGKL-RASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFA 214 (406)
T ss_pred eeecccccc-ccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhcccccccceeeeee
Confidence 999987632 22222223443 3468999999999887 45679999999 56543221 11 2356788999
Q ss_pred Eee-CCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEE-CCCeEEEEECCCCc---eeeeecC
Q 009569 367 WFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-REAAILLLDREANF---ERWIEEE 441 (532)
Q Consensus 367 ~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~I~iwd~~~~~---~~~~~~~ 441 (532)
|+| +.+.+++|+....+-||.-.++........+.+.|+.+.|.++|+.+++|. .+..|..||++... ..+..|.
T Consensus 215 ~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv 294 (406)
T KOG2919|consen 215 FSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHV 294 (406)
T ss_pred ccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhc
Confidence 999 555899999999999998887777777778888999999999999999988 57889999999876 2222222
Q ss_pred ---CceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeC
Q 009569 442 ---EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE 507 (532)
Q Consensus 442 ---~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~ 507 (532)
..-.-+...|++++|++|+.||.|++||++.....+..+..+...+.. +.+ +|--.++++++.
T Consensus 295 ~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNg--vsl-nP~mpilatssG 360 (406)
T KOG2919|consen 295 GDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNG--VSL-NPIMPILATSSG 360 (406)
T ss_pred cCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccc--eec-CcccceeeeccC
Confidence 222345667899999999999999999999855777777777776444 333 676667776654
No 167
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=3.1e-17 Score=147.31 Aligned_cols=233 Identities=15% Similarity=0.238 Sum_probs=176.3
Q ss_pred ccccccccCCCCCceeecc-CCccCCCCCcceeEEcccccccEEEEEEcc--CCCEEEEEeCCCeEEEEEeec------C
Q 009569 234 RDSCLFHNTSDSDFSLYSD-HQCGRNRIPSQTLQILEAHSDEVWFLQFSH--DGKYLASSSKDQSAIIWEVKE------D 304 (532)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~--~g~~las~s~dg~i~iwd~~~------~ 304 (532)
....+.+.+.|..+.+|+. ...+. -.+....+.|.+.|+.+.|.+ -|+.+|+++.|+++.||.-.. +
T Consensus 24 ~GRRmAtCSsDq~vkI~d~~~~s~~----W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~ 99 (361)
T KOG2445|consen 24 YGRRMATCSSDQTVKIWDSTSDSGT----WSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHG 99 (361)
T ss_pred cCceeeeccCCCcEEEEeccCCCCc----eEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccccccc
Confidence 3445567888999999983 32222 345667889999999999987 689999999999999997521 2
Q ss_pred CeeEEEEEeecCCCCeEEEEeCCC--CCEEEEeeCCCcEEEEECCCCcE------EEEee-------ccCCceEEEEEee
Q 009569 305 GQVSLKHRLSGHRKPVFTVSWSPN--DHQLLTCGQEEAIRRWDVNSGEC------LHVYE-------KTGVGLISCGWFL 369 (532)
Q Consensus 305 ~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~~------~~~~~-------~~~~~i~~~~~~~ 369 (532)
..+....++......|+++.|.|. |-.+++++.||.++||+.-.--. ...++ .+..+..|+.|+|
T Consensus 100 ~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~ 179 (361)
T KOG2445|consen 100 RRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNP 179 (361)
T ss_pred ceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeecc
Confidence 345566778888999999999994 67999999999999998744321 12222 3456678899997
Q ss_pred ---CCCeEEEEeCC-----CcEEEEECCC--CeE--EEeecCccCceEEEEEeeC----CCEEEEEECCCeEEEEECCCC
Q 009569 370 ---DGGGIFAGMTD-----KSICLWDLDG--REL--ESWKGQKTLRISDMAITDD----GKRIISICREAAILLLDREAN 433 (532)
Q Consensus 370 ---~~~~l~~~~~d-----g~i~iwd~~~--~~~--~~~~~~~~~~v~~~~~s~~----~~~l~~~~~dg~I~iwd~~~~ 433 (532)
...+|++|+.+ +.++||.... ++. ......+..+|++++|.|+ -..|++++.|| |+||.++..
T Consensus 180 sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~ 258 (361)
T KOG2445|consen 180 SRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVA 258 (361)
T ss_pred ccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeec
Confidence 34668888765 4788887643 222 1222355669999999996 34789999999 999998741
Q ss_pred c----------------------eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecC
Q 009569 434 F----------------------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (532)
Q Consensus 434 ~----------------------~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~ 471 (532)
. ..+-.|++.|..+.|+-.|..|.+.+.||.|++|...
T Consensus 259 ~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 259 RSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred cchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 1 1234688999999999999999999999999999864
No 168
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.78 E-value=3.6e-17 Score=152.13 Aligned_cols=247 Identities=16% Similarity=0.220 Sum_probs=185.6
Q ss_pred cccEEEEEEccCCC-EEEEEeCCCeEEEEEeecC------CeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEE
Q 009569 272 SDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKED------GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (532)
Q Consensus 272 ~~~V~~v~~s~~g~-~las~s~dg~i~iwd~~~~------~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 344 (532)
..+|..+.|.+++. .+|||+.|..|++|.+..+ ..+.....+..|...|+++.|+|+|+.|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 35899999999776 9999999999999998742 2566778889999999999999999999999999999999
Q ss_pred ECC--------C--------CcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEE
Q 009569 345 DVN--------S--------GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMA 408 (532)
Q Consensus 345 d~~--------~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 408 (532)
-.. + ......+.+|...|..++|+|++.++++++.|+.+++||+..+.+......|...+..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 765 2 123355678889999999999999999999999999999999999999998888999999
Q ss_pred EeeCCCEEEEEECCCeEEEEECCCCc-e--------------------eeeecCCc----eeEEEEcCCCCEEEEEec--
Q 009569 409 ITDDGKRIISICREAAILLLDREANF-E--------------------RWIEEEEV----ITSFSLSKDNKYLLVNLI-- 461 (532)
Q Consensus 409 ~s~~~~~l~~~~~dg~I~iwd~~~~~-~--------------------~~~~~~~~----i~~~~~sp~~~~l~~~~~-- 461 (532)
|.|-++++++-+.|...+.+.+.... . ....|+.. ...++|+|||.++++...
T Consensus 173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~ 252 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF 252 (434)
T ss_pred cchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee
Confidence 99999999999988877776665433 0 00112221 346789999999987642
Q ss_pred --C-----CeEEEEecCCCCcceeEEeccccceEEEEEccC---------------CCCCcEEEEEeCCCcEEEEeCCCC
Q 009569 462 --N-----QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG---------------GFEQAFIASGSEDSQVNIFLSFSP 519 (532)
Q Consensus 462 --d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~---------------s~d~~~l~sgs~dg~i~iw~~~~~ 519 (532)
. +..++|+-....+++..+.+.......++++.. -|-+ .++.....+.|+|||.++.
T Consensus 253 ~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyr-lvfaiAt~~svyvydtq~~ 331 (434)
T KOG1009|consen 253 KVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYR-LVFAIATKNSVYVYDTQTL 331 (434)
T ss_pred eeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccc-eEEEEeecceEEEeccccc
Confidence 2 234666654444555555555444433333210 1222 3333445567999998873
No 169
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.77 E-value=6.8e-18 Score=148.40 Aligned_cols=247 Identities=15% Similarity=0.205 Sum_probs=186.0
Q ss_pred CcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEee-cCCCCeEEEEeCCCCCEEEEeeCCC
Q 009569 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS-GHRKPVFTVSWSPNDHQLLTCGQEE 339 (532)
Q Consensus 261 ~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg 339 (532)
|..+...+++|.+.|+++.|-.++. |.+|..-|.|++|++.+.. ....+. .|...|+.+.--|+ ..+.+-+.|+
T Consensus 3 pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r---~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~ 77 (323)
T KOG0322|consen 3 PPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTER---DLPLIRLFGRLFITNLQSIPN-DSLDTQGRDP 77 (323)
T ss_pred CCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCc---cchhhhhhccceeeceeecCC-cchhhcCCCc
Confidence 5567788889999999999988775 8899999999999998653 334444 56778888888886 5678889999
Q ss_pred cEEEEECCCCcEEE--------------Eee---------------------------------------ccCCceEEEE
Q 009569 340 AIRRWDVNSGECLH--------------VYE---------------------------------------KTGVGLISCG 366 (532)
Q Consensus 340 ~i~iwd~~~~~~~~--------------~~~---------------------------------------~~~~~i~~~~ 366 (532)
.+.+|++.-+..+. .+. ...+.+.+..
T Consensus 78 ~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~ 157 (323)
T KOG0322|consen 78 LLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQD 157 (323)
T ss_pred eEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeee
Confidence 99999986532111 000 0112333433
Q ss_pred Eee-CCC--eEEEEeCCCcEEEEECCCCe----------EEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCC
Q 009569 367 WFL-DGG--GIFAGMTDKSICLWDLDGRE----------LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN 433 (532)
Q Consensus 367 ~~~-~~~--~l~~~~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~ 433 (532)
|.. ++. ++++|..+|.+.+||+.++. ...-...+..+|.++.|.+.-..=++++.+..+..|.+...
T Consensus 158 ~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s 237 (323)
T KOG0322|consen 158 KDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHS 237 (323)
T ss_pred ccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccc
Confidence 222 222 35678899999999998752 22222334458999999887666678888888999988654
Q ss_pred c------eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeC
Q 009569 434 F------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE 507 (532)
Q Consensus 434 ~------~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~ 507 (532)
. ....-....|..+.+-||++.+++++.|+.|+||..++. .++..++-|...+. .++| +|+..++|++|.
T Consensus 238 ~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl-~pLAVLkyHsagvn--~vAf-spd~~lmAaask 313 (323)
T KOG0322|consen 238 TGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL-NPLAVLKYHSAGVN--AVAF-SPDCELMAAASK 313 (323)
T ss_pred cCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC-Cchhhhhhhhccee--EEEe-CCCCchhhhccC
Confidence 2 222334556889999999999999999999999999999 89999999998744 4667 999999999999
Q ss_pred CCcEEEEeC
Q 009569 508 DSQVNIFLS 516 (532)
Q Consensus 508 dg~i~iw~~ 516 (532)
|++|.+|++
T Consensus 314 D~rISLWkL 322 (323)
T KOG0322|consen 314 DARISLWKL 322 (323)
T ss_pred CceEEeeec
Confidence 999999986
No 170
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=6.7e-19 Score=176.47 Aligned_cols=245 Identities=14% Similarity=0.240 Sum_probs=190.8
Q ss_pred eeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEE
Q 009569 264 TLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (532)
Q Consensus 264 ~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 343 (532)
.+..+.+|.+.|+|+.|...|.++++|+.|..++||...++ .+.....||.+.|+.++.+.+...+++++.|..|++
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~---~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA---RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccch---hhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 44557799999999999999999999999999999998766 567889999999999999999999999999999999
Q ss_pred EECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEe----ecCccC-----------------
Q 009569 344 WDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW----KGQKTL----------------- 402 (532)
Q Consensus 344 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~----------------- 402 (532)
|.+.++.++..+.+|++.|++++|+|-. +.+.||++++||.+-...... ......
T Consensus 259 Wrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred EecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence 9999999999999999999999999854 678899999999871111000 000000
Q ss_pred ---------ceEEEEEeeCCC-----------EEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCC-CEEEEE
Q 009569 403 ---------RISDMAITDDGK-----------RIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDN-KYLLVN 459 (532)
Q Consensus 403 ---------~v~~~~~s~~~~-----------~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~-~~l~~~ 459 (532)
.+..++|....- +.+++-.+..+.+|++.++. ....+|...+..+.++|-+ +...++
T Consensus 335 s~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msa 414 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSA 414 (1113)
T ss_pred cCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhc
Confidence 112222222222 22233344567788888876 6677888999999999954 566688
Q ss_pred ecCCeEEEEecCCCCcceeEEe-ccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCC
Q 009569 460 LINQEIHLWSIESDPKLVSRYK-GHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPF 520 (532)
Q Consensus 460 ~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~ 520 (532)
+.||...|||+-.+ .+++.+. +|.. .+.+.| ++||..++....-|.++|.....++
T Consensus 415 g~dgst~iwdi~eg-~pik~y~~gh~k---l~d~kF-Sqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 415 GYDGSTIIWDIWEG-IPIKHYFIGHGK---LVDGKF-SQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred cCCCceEeeecccC-Ccceeeecccce---eecccc-CCCCceEecCCCCCceEEeccCCCc
Confidence 89999999999887 5665554 4433 467788 9999999999889999999876654
No 171
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.77 E-value=1e-16 Score=144.90 Aligned_cols=214 Identities=12% Similarity=0.144 Sum_probs=173.9
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEEC-
Q 009569 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV- 346 (532)
Q Consensus 268 l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~- 346 (532)
+.--..+|+|.+|++|++.+|.+..+..|.||.......++..+++..|...|+.++|+|..+.|++|+.|..-++|..
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 3334578999999999999999999999999999876658899999999999999999999999999999999999998
Q ss_pred CCCc--EEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeE----EEeecCccCceEEEEEeeCCCEEEEEE
Q 009569 347 NSGE--CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL----ESWKGQKTLRISDMAITDDGKRIISIC 420 (532)
Q Consensus 347 ~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~ 420 (532)
..++ +...+..++...+++.|+|.++.|++|+.-..|.||-++...- ..+.......|.++.|+|++-++++|+
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 4443 3445556788899999999999999999999999998865321 222333344799999999999999999
Q ss_pred CCCeEEEEECCCCc--------------------eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEE
Q 009569 421 REAAILLLDREANF--------------------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRY 480 (532)
Q Consensus 421 ~dg~I~iwd~~~~~--------------------~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 480 (532)
.|+..+++..--.. ..+....+.+..+.|+|+|..|+-.+.|..+.+-|.....+.+...
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~ 245 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSV 245 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccch
Confidence 99999998742111 1111346779999999999999999999999999987663344444
Q ss_pred e
Q 009569 481 K 481 (532)
Q Consensus 481 ~ 481 (532)
.
T Consensus 246 ~ 246 (361)
T KOG1523|consen 246 A 246 (361)
T ss_pred h
Confidence 3
No 172
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.4e-17 Score=151.25 Aligned_cols=251 Identities=14% Similarity=0.155 Sum_probs=187.2
Q ss_pred EEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecC---CeeEEEEEe-ecCCCCeEEEEeCCCCCEEEEeeCCCcE
Q 009569 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED---GQVSLKHRL-SGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (532)
Q Consensus 266 ~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~---~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~i 341 (532)
+-+.+|.+.|.++.||.++++||+|+.|..+++|++... ...+++... ..|...|.|++|.....++++|+.+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 346789999999999999999999999999999998631 111233322 2356889999999999999999999999
Q ss_pred EEEECCCCcEEEEeecc--CCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCe--EEEe-ecCccCceEEEEEeeCC-CE
Q 009569 342 RRWDVNSGECLHVYEKT--GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE--LESW-KGQKTLRISDMAITDDG-KR 415 (532)
Q Consensus 342 ~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~-~~~~~~~v~~~~~s~~~-~~ 415 (532)
...|+++.+.+..+... .+.|+.+..+|-.+.+++.+.++.|.+||.+..+ ...+ ........+.+.|+|.. .+
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 99999999988777533 3589999999999999999999999999997543 1111 12222367888999954 57
Q ss_pred EEEEECCCeEEEEECCCCceee------ee---cCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEe----c
Q 009569 416 IISICREAAILLLDREANFERW------IE---EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK----G 482 (532)
Q Consensus 416 l~~~~~dg~I~iwd~~~~~~~~------~~---~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~ 482 (532)
|++.+..+-+-+||.+.....+ .+ ......++.|+|+|..+++--....-.+||+.+....+..+. |
T Consensus 210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G 289 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG 289 (609)
T ss_pred EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence 8888889999999998866111 11 122346788999999988877666777899887534444443 1
Q ss_pred cccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 483 HKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 483 ~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
.....+.-.+|| - +..-|++|+.+=.|+||.+..
T Consensus 290 Y~N~~T~KS~~F-~-~D~~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 290 YCNIKTIKSMTF-I-DDYTVATGSDHWGIHIWKLPR 323 (609)
T ss_pred ceeeeeeeeeee-e-cceeeeccCcccceEEEecCC
Confidence 112223334566 3 344599999999999999854
No 173
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.77 E-value=1.3e-15 Score=154.55 Aligned_cols=249 Identities=25% Similarity=0.395 Sum_probs=196.6
Q ss_pred EcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCC-CCeEEEEe-CCCCC-EEEEeeC-CCcEE
Q 009569 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR-KPVFTVSW-SPNDH-QLLTCGQ-EEAIR 342 (532)
Q Consensus 267 ~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~-s~~~~-~l~s~~~-dg~i~ 342 (532)
.+..|...|.++.|.+.+..++.++.|+.+.+|+...+. .....+..+. ..+..+.+ ++++. .++.++. |+.+.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE--KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc--eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence 566799999999999999999999999999999998653 2344555533 36777777 88887 5555455 89999
Q ss_pred EEECCC-CcEEEEeeccCCceEEEEEeeCCCeEEEEeC-CCcEEEEECCCCeEEEeecCccCceEEEEEeeCCC-EEEEE
Q 009569 343 RWDVNS-GECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DKSICLWDLDGRELESWKGQKTLRISDMAITDDGK-RIISI 419 (532)
Q Consensus 343 iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~ 419 (532)
+|+... ......+..|...|..+.|+|++..+++++. |+.+++|++...........+...|.+++|+|++. .++++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 217 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASG 217 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEe
Confidence 999988 7888888999999999999999998888885 99999999987555544444666999999999998 55555
Q ss_pred ECCCeEEEEECCCCc--e-eeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCC
Q 009569 420 CREAAILLLDREANF--E-RWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGG 496 (532)
Q Consensus 420 ~~dg~I~iwd~~~~~--~-~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s 496 (532)
+.|+.|++||...+. . .+..|.... ...|+|++.++++++.|+.+++|++......+..+.+|...+.. ..| +
T Consensus 218 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~-~ 293 (466)
T COG2319 218 SSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLS--VAF-S 293 (466)
T ss_pred cCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEE--EEE-C
Confidence 899999999988555 2 345555554 33899999999999999999999998773324445566555433 455 7
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCc
Q 009569 497 FEQAFIASGSEDSQVNIFLSFSPFA 521 (532)
Q Consensus 497 ~d~~~l~sgs~dg~i~iw~~~~~~~ 521 (532)
|++..+++++.|+.+.+|+..+...
T Consensus 294 ~~~~~~~~~~~d~~~~~~~~~~~~~ 318 (466)
T COG2319 294 PDGKLLASGSSDGTVRLWDLETGKL 318 (466)
T ss_pred CCCCEEEEeeCCCcEEEEEcCCCce
Confidence 8888888899999999998887653
No 174
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.76 E-value=3.5e-15 Score=151.34 Aligned_cols=266 Identities=24% Similarity=0.376 Sum_probs=201.6
Q ss_pred CCCCCceeeccCCccCCCCCcceeEEccccc-ccEEEEEE-ccCCC-EEEEEeC-CCeEEEEEeecCCeeEEEEEeecCC
Q 009569 242 TSDSDFSLYSDHQCGRNRIPSQTLQILEAHS-DEVWFLQF-SHDGK-YLASSSK-DQSAIIWEVKEDGQVSLKHRLSGHR 317 (532)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~v~~-s~~g~-~las~s~-dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (532)
+.+..+.+|+..... .....+.++. ..+..+.+ ++++. +++..+. |+.+.+|+... .......+..|.
T Consensus 84 ~~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~ 155 (466)
T COG2319 84 SSDGTIKLWDLDNGE------KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLST--PGKLIRTLEGHS 155 (466)
T ss_pred cCCCcEEEEEcCCCc------eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecC--CCeEEEEEecCc
Confidence 345566666544321 2455666544 37777777 88887 5555444 99999999985 124667788999
Q ss_pred CCeEEEEeCCCCCEEEEeeC-CCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCC-eEEEEeCCCcEEEEECCCCeEEE
Q 009569 318 KPVFTVSWSPNDHQLLTCGQ-EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGG-GIFAGMTDKSICLWDLDGRELES 395 (532)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~ 395 (532)
..|..+.|+|++..+++++. |+.+++|++.++..+..+..|...+.+++|+|++. .+++++.|+.|.+||...+....
T Consensus 156 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~ 235 (466)
T COG2319 156 ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLR 235 (466)
T ss_pred ccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEe
Confidence 99999999999998888886 99999999999889999999999999999999988 45555899999999988655554
Q ss_pred -eecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc---eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecC
Q 009569 396 -WKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (532)
Q Consensus 396 -~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~ 471 (532)
....+.... ...|+|++..+++++.|+.+++||..... .....|...+.++.|+|++..+++++.|+.+.+||..
T Consensus 236 ~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~ 314 (466)
T COG2319 236 STLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE 314 (466)
T ss_pred eecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcC
Confidence 344443343 33899999889999999999999998665 2224678899999999998888889889889999988
Q ss_pred CCCcceeEEe--ccccceEEEEEccCCCCCcEEEEE-eCCCcEEEEeCCCCC
Q 009569 472 SDPKLVSRYK--GHKRARFVIRSCFGGFEQAFIASG-SEDSQVNIFLSFSPF 520 (532)
Q Consensus 472 ~~~~~~~~~~--~~~~~~~~i~~~~~s~d~~~l~sg-s~dg~i~iw~~~~~~ 520 (532)
+. ....... .|...+.. +.+ .+++..++.+ ..|+.+.+|+.....
T Consensus 315 ~~-~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 315 TG-KLLSSLTLKGHEGPVSS--LSF-SPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred CC-ceEEEeeecccCCceEE--EEE-CCCCCEEEEeecCCCcEEeeecCCCc
Confidence 77 4444444 66664333 444 4554555555 688999999998875
No 175
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.76 E-value=8.6e-17 Score=143.34 Aligned_cols=243 Identities=18% Similarity=0.240 Sum_probs=181.0
Q ss_pred ccEEEEEEcc---CCCEEEEEeC----CCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCC-----EEEEeeCCCc
Q 009569 273 DEVWFLQFSH---DGKYLASSSK----DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH-----QLLTCGQEEA 340 (532)
Q Consensus 273 ~~V~~v~~s~---~g~~las~s~----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-----~l~s~~~dg~ 340 (532)
-.+.++.||. .+.+||.|+. .+.|.|-.+.....-.....-..|.-+++.+.|.|+.. +|||++ ..
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DF 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--Ce
Confidence 3577888884 3457888874 46777776653221111222247899999999999763 555544 48
Q ss_pred EEEEECCCCcEE----EE-----eeccCCceEEEEEee-CCCeEEEEeCCCcEEEEECCCC---eEEEeecCccCceEEE
Q 009569 341 IRRWDVNSGECL----HV-----YEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGR---ELESWKGQKTLRISDM 407 (532)
Q Consensus 341 i~iwd~~~~~~~----~~-----~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~ 407 (532)
+++|.+...+.. .. -..+.+++++..|+. +-+++.+++-|-++.|||++.+ .+.+....|...|.++
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI 202 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI 202 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE
Confidence 999999642211 11 123467899999987 7788999999999999999874 3456666677799999
Q ss_pred EEeeCCC-EEEEEECCCeEEEEECCCCc-eeeeec----CCceeEEEEcCC-CCEEEEEecC-CeEEEEecCCCCcceeE
Q 009569 408 AITDDGK-RIISICREAAILLLDREANF-ERWIEE----EEVITSFSLSKD-NKYLLVNLIN-QEIHLWSIESDPKLVSR 479 (532)
Q Consensus 408 ~~s~~~~-~l~~~~~dg~I~iwd~~~~~-~~~~~~----~~~i~~~~~sp~-~~~l~~~~~d-g~i~iwd~~~~~~~~~~ 479 (532)
+|...+. .+++++.||.|++||++... .+.+.. ..+...++|++. -+++++-..| ..|.|.|++....++.+
T Consensus 203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~ 282 (364)
T KOG0290|consen 203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR 282 (364)
T ss_pred EeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh
Confidence 9998654 78899999999999999988 333322 456788999985 4777776555 46999999998889999
Q ss_pred EeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC
Q 009569 480 YKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSP 519 (532)
Q Consensus 480 ~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~ 519 (532)
+++|...+..+.+.. .....|+|++.|..+.|||+.+.
T Consensus 283 L~~H~a~VNgIaWaP--hS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 283 LRNHQASVNGIAWAP--HSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred hhcCcccccceEecC--CCCceeeecCCcceEEEEecccc
Confidence 999999988866654 34678999999999999999864
No 176
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.76 E-value=9.6e-17 Score=162.72 Aligned_cols=246 Identities=15% Similarity=0.175 Sum_probs=180.5
Q ss_pred ccccEEEEEEcc-CCCEEEEEeCCCeEEEEEeecCCe--eE-EEEEeecCCCCeEEEEeCCCCC--EEEEeeCCCcEEEE
Q 009569 271 HSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQ--VS-LKHRLSGHRKPVFTVSWSPNDH--QLLTCGQEEAIRRW 344 (532)
Q Consensus 271 h~~~V~~v~~s~-~g~~las~s~dg~i~iwd~~~~~~--~~-~~~~~~~h~~~v~~l~~s~~~~--~l~s~~~dg~i~iw 344 (532)
-..+|+|+.|+| +..++|.|..+|.|.+||+..+.. .. .......|..+++.+.|..+.. -+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 457899999999 778889999999999999986543 11 1223346899999999987544 49999999999999
Q ss_pred ECCCCcEE------EEee------ccCCceEEEEEee-CCCeEEEEeCCCcEEEEECCC---Ce-----EEEeecCccCc
Q 009569 345 DVNSGECL------HVYE------KTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDG---RE-----LESWKGQKTLR 403 (532)
Q Consensus 345 d~~~~~~~------~~~~------~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~---~~-----~~~~~~~~~~~ 403 (532)
+++.-... .... .....++++.|.+ +...+++|+.+|.|..-+..+ .. .......|.+.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 98654321 1111 2235678899988 667799999999988744432 22 12222334559
Q ss_pred eEEEEEeeCCCEEEEEECCCeEEEEECCC-Cc--eeeeecCCceeEEEEcCCC-CEEEEEecCCeEEEEecCCC-Cccee
Q 009569 404 ISDMAITDDGKRIISICREAAILLLDREA-NF--ERWIEEEEVITSFSLSKDN-KYLLVNLINQEIHLWSIESD-PKLVS 478 (532)
Q Consensus 404 v~~~~~s~~~~~l~~~~~dg~I~iwd~~~-~~--~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~i~iwd~~~~-~~~~~ 478 (532)
|+++.++|-+..++..+.|.+++||.... .. ..+..+...+++++|||.. ..++++..||.|.+||+... ..++.
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~ 480 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL 480 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence 99999999877666666699999999873 33 3444555669999999976 56777888999999999643 24555
Q ss_pred EEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC
Q 009569 479 RYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSP 519 (532)
Q Consensus 479 ~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~ 519 (532)
+...+.. ++...+++++|++|++|...|++++|++...
T Consensus 481 s~~~~~~---~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 481 SQKVCSP---ALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccccccc---ccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 5544422 3445565889999999999999999999754
No 177
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=3.2e-18 Score=178.09 Aligned_cols=234 Identities=15% Similarity=0.229 Sum_probs=181.4
Q ss_pred cccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCC-CEEEEEeCCCeEEEEEeecCCeeEEEEEeec
Q 009569 237 CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDG-KYLASSSKDQSAIIWEVKEDGQVSLKHRLSG 315 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~ 315 (532)
.+..+..++.+.+|+.... ........+.....|++.|..+.|++.+ +.||+|+.||.|.|||+..-... ....-..
T Consensus 82 lIaGG~edG~I~ly~p~~~-~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP-~~~~~~~ 159 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASI-IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP-FTPGSQA 159 (1049)
T ss_pred eeeccccCCceEEecchhh-ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCC-CCCCCCC
Confidence 3456677889999987665 3334456677888999999999999955 59999999999999999853221 0010123
Q ss_pred CCCCeEEEEeCCC-CCEEEEeeCCCcEEEEECCCCcEEEEeeccCC--ceEEEEEeeCC-CeEEEEeCCC---cEEEEEC
Q 009569 316 HRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNSGECLHVYEKTGV--GLISCGWFLDG-GGIFAGMTDK---SICLWDL 388 (532)
Q Consensus 316 h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~-~~l~~~~~dg---~i~iwd~ 388 (532)
....|.+++|+.. ...|++++.+|.+.|||++..+.+..+..+.. .+..+.|+|+. ..+++++.|. .|.+||+
T Consensus 160 ~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDl 239 (1049)
T KOG0307|consen 160 PPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDL 239 (1049)
T ss_pred CcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecc
Confidence 4578999999874 46788999999999999998888777765543 47789999965 4566666544 6999999
Q ss_pred CC--CeEEEeecCccCceEEEEEeeCC-CEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCC-EEEEEecC
Q 009569 389 DG--RELESWKGQKTLRISDMAITDDG-KRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNK-YLLVNLIN 462 (532)
Q Consensus 389 ~~--~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~-~l~~~~~d 462 (532)
+. ..+..+ .+|...|.++.|++.+ .++++++.|+.|.+|+..+++ ..+-.....+..+.|+|... .+++.+.|
T Consensus 240 R~assP~k~~-~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfd 318 (1049)
T KOG0307|consen 240 RFASSPLKIL-EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFD 318 (1049)
T ss_pred cccCCchhhh-cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheec
Confidence 74 333444 4555689999999966 789999999999999999988 34444667899999999664 88888999
Q ss_pred CeEEEEecCCC
Q 009569 463 QEIHLWSIESD 473 (532)
Q Consensus 463 g~i~iwd~~~~ 473 (532)
|.|.||.+.+.
T Consensus 319 gkI~I~sl~~~ 329 (1049)
T KOG0307|consen 319 GKISIYSLQGT 329 (1049)
T ss_pred cceeeeeeecC
Confidence 99999999765
No 178
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=2.2e-17 Score=154.69 Aligned_cols=192 Identities=21% Similarity=0.278 Sum_probs=152.3
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEe
Q 009569 276 WFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY 355 (532)
Q Consensus 276 ~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 355 (532)
.+++|+++|..|++|+.||++|||++.+. ........|...|.++.|+|||++|++.+.| ..+||++.+|.++...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~---~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM---LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc---hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 68999999999999999999999998744 3445567799999999999999999999999 9999999999776655
Q ss_pred e--ccCCceEEEEEeeCC---CeEE--EEeCCCcEEEEECCCC------eEEEeecCccCceEEEEEeeCCCEEEEEECC
Q 009569 356 E--KTGVGLISCGWFLDG---GGIF--AGMTDKSICLWDLDGR------ELESWKGQKTLRISDMAITDDGKRIISICRE 422 (532)
Q Consensus 356 ~--~~~~~i~~~~~~~~~---~~l~--~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 422 (532)
. ..+..+..|.|+.|+ .+.+ ....-+.|..||+... ...+....+. .|++++++++|++++.|+.|
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~-siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK-SISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC-cceeEEEcCCCcEEEEeccC
Confidence 4 224456678888776 3333 3334566777776421 1122222222 79999999999999999999
Q ss_pred CeEEEEECCCCc---eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCC
Q 009569 423 AAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (532)
Q Consensus 423 g~I~iwd~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~ 472 (532)
|.|.+++..+.+ .....|...|+.+.|+||.+++++.+.+..+.+..+.-
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999998877 33346888999999999999999999999988888764
No 179
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.74 E-value=3.1e-17 Score=160.00 Aligned_cols=236 Identities=17% Similarity=0.268 Sum_probs=176.0
Q ss_pred EccCCCEEEE--EeCCCeEEEEEeecCCeeEE--EEEeecCCCCeEEEEeCC-CCCEEEEeeCCCcEEEEECCCC-----
Q 009569 280 FSHDGKYLAS--SSKDQSAIIWEVKEDGQVSL--KHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNSG----- 349 (532)
Q Consensus 280 ~s~~g~~las--~s~dg~i~iwd~~~~~~~~~--~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~----- 349 (532)
|+.+...+|+ ++..|.|-||+++..+.+.- +..+ -....|+.+.|.| |...|++++.||.|++|.+..+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 4445566664 46678999999986554311 1111 1345699999999 7889999999999999999654
Q ss_pred --cEEEEeeccCCceEEEEEee-CCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEE
Q 009569 350 --ECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAIL 426 (532)
Q Consensus 350 --~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~ 426 (532)
.....+..|...|+++.|+| -.+.|++++.|-+|++||+.+.....-...|.+.|.+++|+|+|+.+++.+.||+|+
T Consensus 666 ~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r 745 (1012)
T KOG1445|consen 666 EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR 745 (1012)
T ss_pred cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence 34567888999999999999 567899999999999999998877777777778999999999999999999999999
Q ss_pred EEECCCCceeeeecCCc----eeEEEEcCCCCEEEEEecCC----eEEEEecCCCC-cceeEEeccccceEEEEEccCCC
Q 009569 427 LLDREANFERWIEEEEV----ITSFSLSKDNKYLLVNLINQ----EIHLWSIESDP-KLVSRYKGHKRARFVIRSCFGGF 497 (532)
Q Consensus 427 iwd~~~~~~~~~~~~~~----i~~~~~sp~~~~l~~~~~dg----~i~iwd~~~~~-~~~~~~~~~~~~~~~i~~~~~s~ 497 (532)
+|..++.........++ -..+.|.-||+++++.+.|. +|.+||..+-. .++.+..-...+. +-+-++.+
T Consensus 746 Vy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps--~LvP~YD~ 823 (1012)
T KOG1445|consen 746 VYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPS--PLVPHYDY 823 (1012)
T ss_pred EeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCc--cccccccC
Confidence 99999887444433333 34678888999999887664 58899876541 2333322221111 11333366
Q ss_pred CCc-EEEEEeCCCcEEEEeCCC
Q 009569 498 EQA-FIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 498 d~~-~l~sgs~dg~i~iw~~~~ 518 (532)
|.. ++++|-.|..|++|.+-.
T Consensus 824 Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 824 DSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred CCceEEEecCCCceEEEEEecC
Confidence 654 567888899999999864
No 180
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.74 E-value=6.3e-17 Score=158.70 Aligned_cols=231 Identities=14% Similarity=0.229 Sum_probs=178.1
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEE
Q 009569 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH 353 (532)
Q Consensus 274 ~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 353 (532)
.|..++|-|||..|+.+. +..+.+||.+.| ....++++|...|.+++|+.||+.+++|+.|..|.+|+-.-.-. .
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG---~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDG---TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-L 88 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCc---ccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-e
Confidence 789999999999888775 457899999987 45688999999999999999999999999999999998643322 2
Q ss_pred EeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCC
Q 009569 354 VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN 433 (532)
Q Consensus 354 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~ 433 (532)
.+ .|+..|.|+.|+|-...+++++- ...-+|..+.+.+....... .+.+++|+.||.+++.|-.+|+|.+-+-...
T Consensus 89 kY-SH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K~kss~--R~~~CsWtnDGqylalG~~nGTIsiRNk~gE 164 (1081)
T KOG1538|consen 89 KY-SHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSKHKSSS--RIICCSWTNDGQYLALGMFNGTISIRNKNGE 164 (1081)
T ss_pred ee-ccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHHhhhhhe--eEEEeeecCCCcEEEEeccCceEEeecCCCC
Confidence 33 48889999999998888888775 34678887765554443332 7999999999999999999999999865544
Q ss_pred ceeee----ecCCceeEEEEcCCC-----CEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEE
Q 009569 434 FERWI----EEEEVITSFSLSKDN-----KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIAS 504 (532)
Q Consensus 434 ~~~~~----~~~~~i~~~~~sp~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~s 504 (532)
....+ +.+.+|.+++|+|.. ..+++.....++.++.+... .+..-+.-.-.. .+..+ -++|.|+..
T Consensus 165 ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--~Igk~r~L~FdP--~CisY-f~NGEy~Li 239 (1081)
T KOG1538|consen 165 EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--QIGKDRALNFDP--CCISY-FTNGEYILL 239 (1081)
T ss_pred cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce--eecccccCCCCc--hhhee-ccCCcEEEE
Confidence 42222 357889999999964 57888888888888887653 333222111111 22333 589999999
Q ss_pred EeCCCcEEEEeCCC
Q 009569 505 GSEDSQVNIFLSFS 518 (532)
Q Consensus 505 gs~dg~i~iw~~~~ 518 (532)
|+.|+.+.+|..+.
T Consensus 240 GGsdk~L~~fTR~G 253 (1081)
T KOG1538|consen 240 GGSDKQLSLFTRDG 253 (1081)
T ss_pred ccCCCceEEEeecC
Confidence 99999999997765
No 181
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=4e-16 Score=135.75 Aligned_cols=232 Identities=16% Similarity=0.194 Sum_probs=171.6
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEEeecC--------CeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEE
Q 009569 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKED--------GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (532)
Q Consensus 273 ~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~--------~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 344 (532)
..|.+-+|+|.+++|+.|+.+|+|.+..+++- ++ ..+...++|.++|+.++|. ..+|++|+. |.|+-|
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk-~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw 86 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGK-LKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGW 86 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCC-cceeeccccCCCeeeeeee--hhheeeccC-ceEEEe
Confidence 34667789999999999999999999998631 11 2445568999999999998 447777664 999999
Q ss_pred ECCCCcE----EE----Eeec-----cCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEee
Q 009569 345 DVNSGEC----LH----VYEK-----TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD 411 (532)
Q Consensus 345 d~~~~~~----~~----~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 411 (532)
..+.... .. .... .-..|+++...|..+-++.++.|+.++.||++++.+......|+..|.++.--.
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence 8754321 00 0111 123578888999888888888999999999999999888888888999998866
Q ss_pred CCCEEEEEECCCeEEEEECCCCc-eeeeec-----------CCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeE
Q 009569 412 DGKRIISICREAAILLLDREANF-ERWIEE-----------EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSR 479 (532)
Q Consensus 412 ~~~~l~~~~~dg~I~iwd~~~~~-~~~~~~-----------~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 479 (532)
....+++|+.||++++||.++.+ ...+.. ...|.+++. +..++++|+ ...+.+|++++. ++...
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrss-e~t~v 242 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSS-ESTCV 242 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCC-CceEE
Confidence 66689999999999999999987 333221 233555554 466888876 567999999987 77766
Q ss_pred EeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 480 YKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 480 ~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
|.-... +-.+.| +...++++++.+.|.-|.+..
T Consensus 243 fpipa~---v~~v~F---~~d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 243 FPIPAR---VHLVDF---VDDCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred Eecccc---eeEeee---ecceEEEeccccceeeeeecc
Confidence 653322 122444 446788888888888888764
No 182
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=3.8e-17 Score=157.91 Aligned_cols=249 Identities=14% Similarity=0.254 Sum_probs=178.8
Q ss_pred ccccccccCCCCCceeeccCCc-cCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCC-------
Q 009569 234 RDSCLFHNTSDSDFSLYSDHQC-GRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG------- 305 (532)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~------- 305 (532)
....+++++.++.+.+|..... .......+++.++.+|.++|.|++.+++++.+.+|+.||+|+.|++....
T Consensus 305 sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~d 384 (577)
T KOG0642|consen 305 SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYD 384 (577)
T ss_pred CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccC
Confidence 3445566677777777765221 11222347889999999999999999999999999999999999765221
Q ss_pred eeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeecc--CCceEEEEEeeCC-CeEEEEeCCCc
Q 009569 306 QVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT--GVGLISCGWFLDG-GGIFAGMTDKS 382 (532)
Q Consensus 306 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~~-~~l~~~~~dg~ 382 (532)
.......+.||...|+.+++|+....|++|+.||+++.|+...... .+|... .+...++.+-... ...++...-+.
T Consensus 385 p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~ 463 (577)
T KOG0642|consen 385 PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGY 463 (577)
T ss_pred cchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhccccc
Confidence 1134466889999999999999999999999999999999876655 344322 2333445543222 12222222233
Q ss_pred EEEEECCCCeEEEeec-------CccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCC
Q 009569 383 ICLWDLDGRELESWKG-------QKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDN 453 (532)
Q Consensus 383 i~iwd~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~ 453 (532)
-.+++++......+.. .....+.-+.++|.+.+.+++..|+.|+++|..++. .....|...++++++.|+|
T Consensus 464 ~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng 543 (577)
T KOG0642|consen 464 TSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNG 543 (577)
T ss_pred ccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCC
Confidence 3333333222111111 111257788899999999999999999999999988 6677899999999999999
Q ss_pred CEEEEEecCCeEEEEecCCCCcceeEEeccc
Q 009569 454 KYLLVNLINQEIHLWSIESDPKLVSRYKGHK 484 (532)
Q Consensus 454 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 484 (532)
-+|++++.|+.+++|.+... .++.....|.
T Consensus 544 ~~l~s~s~d~sv~l~kld~k-~~~~es~~~r 573 (577)
T KOG0642|consen 544 PYLMSGSHDGSVRLWKLDVK-TCVLESTAHR 573 (577)
T ss_pred ceEEeecCCceeehhhccch-heeecccccc
Confidence 99999999999999998776 6666555554
No 183
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.73 E-value=1.2e-15 Score=159.46 Aligned_cols=262 Identities=14% Similarity=0.117 Sum_probs=190.3
Q ss_pred CCCCcceeEEcccccccEEEEEEccCC-CEEEEEeCCCeEEEEEeec----CCeeEEEEEeecCCCCeEEEEeCCCCCEE
Q 009569 258 NRIPSQTLQILEAHSDEVWFLQFSHDG-KYLASSSKDQSAIIWEVKE----DGQVSLKHRLSGHRKPVFTVSWSPNDHQL 332 (532)
Q Consensus 258 ~~~~~~~~~~l~~h~~~V~~v~~s~~g-~~las~s~dg~i~iwd~~~----~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 332 (532)
|+..+..+..+..|...|..++.++.. .+++|||.||+|++|+... ++..+...++..-...+.++...+.++.+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 677788899999999999999988854 9999999999999999863 23344555565567889999999999999
Q ss_pred EEeeCCCcEEEEECCCC-------cEEEEeecc-CCceEEE-EEee-CCC-eEEEEeCCCcEEEEECCCCeE---EEeec
Q 009569 333 LTCGQEEAIRRWDVNSG-------ECLHVYEKT-GVGLISC-GWFL-DGG-GIFAGMTDKSICLWDLDGREL---ESWKG 398 (532)
Q Consensus 333 ~s~~~dg~i~iwd~~~~-------~~~~~~~~~-~~~i~~~-~~~~-~~~-~l~~~~~dg~i~iwd~~~~~~---~~~~~ 398 (532)
|.++.||.|.+.+++.. .+.+....+ .+.+.++ +|.. .+. .++.+...+.|..||++.... .....
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 99999999999999652 122222222 2333333 3332 333 677888889999999986332 12222
Q ss_pred CccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc---eeeeecCCceeEEEEcCCC---CEEEEEe--cCCeEEEEec
Q 009569 399 QKTLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDN---KYLLVNL--INQEIHLWSI 470 (532)
Q Consensus 399 ~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~---~~~~~~~~~i~~~~~sp~~---~~l~~~~--~dg~i~iwd~ 470 (532)
.| +.|++++.+|.++++++|+..|.+.+||++-+. ....++..+|+.+..+|-. ...++++ ..+.|.+|++
T Consensus 1194 ~h-G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1194 RH-GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred cc-cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 33 489999999999999999999999999998876 3334556788888887743 3555444 4778999999
Q ss_pred CCCCcceeEEecc-----------------ccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCCce
Q 009569 471 ESDPKLVSRYKGH-----------------KRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPFAK 522 (532)
Q Consensus 471 ~~~~~~~~~~~~~-----------------~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~~~ 522 (532)
.++ .....+... ......+.+++ ...+.++.+|+.|+.|+.||.......
T Consensus 1273 ~~g-~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~-~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1273 ETG-LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGV-CEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ccC-cceEEEEcCCCCcchhhhcccccCCCCCcccceeeec-ccCCceeeecCCccceeeccCCCcccc
Confidence 987 444444322 22233444555 444568999999999999999887654
No 184
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=5.4e-15 Score=136.34 Aligned_cols=237 Identities=11% Similarity=0.136 Sum_probs=177.8
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCC--CcEEEEECCCC
Q 009569 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE--EAIRRWDVNSG 349 (532)
Q Consensus 272 ~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d--g~i~iwd~~~~ 349 (532)
...+..+.|+.+...|..|+.||. ++|+....+. ..........|.-+-|+. .+++..+.+ ..+++++++.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k---~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK---CFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCce-eEEecCchHH---hhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccC
Confidence 345677779999999999999986 7888764322 111111223355555654 456655554 35999999888
Q ss_pred cEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEee-cC--ccCceEEEEEeeCCCEEEEEE--CCCe
Q 009569 350 ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK-GQ--KTLRISDMAITDDGKRIISIC--REAA 424 (532)
Q Consensus 350 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~--~~~~v~~~~~s~~~~~l~~~~--~dg~ 424 (532)
..+..+. ....|.++.++ .+.++++-.+. |+|||+++.++.... .. +...+.++++++.+.+++.-+ ..|.
T Consensus 79 ~~ICe~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGD 154 (391)
T ss_pred ceEEEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCce
Confidence 7776665 34568888886 45677766554 999999986554332 22 222466666676777887643 5689
Q ss_pred EEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCe-EEEEecCCCCcceeEEeccccceEEEEEccCCCCCcE
Q 009569 425 ILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQE-IHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAF 501 (532)
Q Consensus 425 I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~ 501 (532)
|.+||..+-+ ..+..|.+++.+++|+++|.+||+++..|+ |+|+.+.++ +.+..|+.....+.+..++| ++++++
T Consensus 155 V~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G-~kl~eFRRG~~~~~IySL~F-s~ds~~ 232 (391)
T KOG2110|consen 155 VVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG-QKLYEFRRGTYPVSIYSLSF-SPDSQF 232 (391)
T ss_pred EEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc-cEeeeeeCCceeeEEEEEEE-CCCCCe
Confidence 9999999887 666789999999999999999999999997 799999998 88888887766777778888 999999
Q ss_pred EEEEeCCCcEEEEeCCCCC
Q 009569 502 IASGSEDSQVNIFLSFSPF 520 (532)
Q Consensus 502 l~sgs~dg~i~iw~~~~~~ 520 (532)
|++.|+.++|+||.++...
T Consensus 233 L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEecCCCeEEEEEecccc
Confidence 9999999999999998644
No 185
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=9.9e-15 Score=127.15 Aligned_cols=278 Identities=14% Similarity=0.192 Sum_probs=191.0
Q ss_pred HHHHHHHhcccccccccCCCCCceeeccCCccC--CCCCc-ceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEe
Q 009569 225 LVEKALDVQRDSCLFHNTSDSDFSLYSDHQCGR--NRIPS-QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEV 301 (532)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~ 301 (532)
++.|++.-. ...+|.+...+.+.+++...... ...++ .++-..++|.++|+.++|. ..+|++|+ ||.|+-|..
T Consensus 13 vf~qa~sp~-~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 13 VFAQAISPS-KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHhhCCc-ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 444444322 23467778888887766443322 12233 3455568999999999998 34666665 699999988
Q ss_pred ecCCe---eEEEE--EeecC-----CCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCC
Q 009569 302 KEDGQ---VSLKH--RLSGH-----RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG 371 (532)
Q Consensus 302 ~~~~~---~~~~~--~~~~h-----~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~ 371 (532)
+.... .+... ....| -..|+++...|..+-+++++.|+.++-||+++|+..+.+++|++.+.++.--...
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence 64221 01111 11112 2358899999988888888899999999999999999999999999999886667
Q ss_pred CeEEEEeCCCcEEEEECCCCeEEEeecC----------ccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc-eeeeec
Q 009569 372 GGIFAGMTDKSICLWDLDGRELESWKGQ----------KTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEE 440 (532)
Q Consensus 372 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~-~~~~~~ 440 (532)
..+++|+.||++++||+++.+....... ....|.+++.+ ..++++| ....+.+|.++..+ ...+..
T Consensus 169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCG-gGp~lslwhLrsse~t~vfpi 245 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCG-GGPKLSLWHLRSSESTCVFPI 245 (325)
T ss_pred cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEec-CCCceeEEeccCCCceEEEec
Confidence 7899999999999999998665544331 22245566554 4477765 45689999999988 677778
Q ss_pred CCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEe
Q 009569 441 EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFL 515 (532)
Q Consensus 441 ~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~ 515 (532)
..++..+.|. .+.+++++..+.+.-|.+..- +-..........+...+.. +| -++|-.++..+++.|+.
T Consensus 246 pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~Gv--l~a~ip~~s~~c~s~s~~~-~p-~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 246 PARVHLVDFV--DDCVLIGGEGNHVQSYTLNGV--LQANIPVESTACYSASWQT-SP-IKFISIAGFSNKLHILK 314 (325)
T ss_pred ccceeEeeee--cceEEEeccccceeeeeeccE--EEEeccCCccceeeecccC-Cc-eEEEEecccceeeeeee
Confidence 8889999997 457888888888999987642 3333333333222222222 34 45676777788887763
No 186
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=3.2e-16 Score=152.29 Aligned_cols=203 Identities=17% Similarity=0.276 Sum_probs=153.8
Q ss_pred EEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCC-----------------
Q 009569 309 LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG----------------- 371 (532)
Q Consensus 309 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~----------------- 371 (532)
+...+.+|++.|.+++..|.|.+|++|+.||+|+||.+.||.|+.++.. .+.|.|++|+|.+
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 4566789999999999999999999999999999999999999886653 3356666666643
Q ss_pred ---------------------------------------------------------------CeEEEEeCC---CcEEE
Q 009569 372 ---------------------------------------------------------------GGIFAGMTD---KSICL 385 (532)
Q Consensus 372 ---------------------------------------------------------------~~l~~~~~d---g~i~i 385 (532)
.+|++...+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 333332211 12333
Q ss_pred EECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCC
Q 009569 386 WDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQ 463 (532)
Q Consensus 386 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg 463 (532)
+++.......-+....+.|.++.|+|...++++++. ..|++||+.... ..+......|.+++.+|.|..|++|+.|+
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence 333221111111122336899999999888888765 589999998866 55666777899999999999999999999
Q ss_pred eEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeC
Q 009569 464 EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLS 516 (532)
Q Consensus 464 ~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~ 516 (532)
.+..||+.-..++.+++..|...+. .++| ++.-.++++|+.||.+.||.-
T Consensus 630 k~~WfDldlsskPyk~lr~H~~avr--~Va~-H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 630 KMCWFDLDLSSKPYKTLRLHEKAVR--SVAF-HKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred eeEEEEcccCcchhHHhhhhhhhhh--hhhh-ccccceeeeecCCCcEEEEee
Confidence 9999999877689999999988743 3566 888899999999999999863
No 187
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=6.7e-16 Score=157.42 Aligned_cols=212 Identities=16% Similarity=0.206 Sum_probs=150.1
Q ss_pred eeEEcccccccEEEEEEccCCCEEEEEeCC---CeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEee-CCC
Q 009569 264 TLQILEAHSDEVWFLQFSHDGKYLASSSKD---QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QEE 339 (532)
Q Consensus 264 ~~~~l~~h~~~V~~v~~s~~g~~las~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg 339 (532)
..+.+..|...+.+.+|||||+.|+.++.+ ..|++||+.++. ...+..+.+|. ..++|+|||+.|+.++ .+|
T Consensus 195 ~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~-~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g 270 (429)
T PRK01742 195 NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA-RKVVASFRGHN---GAPAFSPDGSRLAFASSKDG 270 (429)
T ss_pred CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc-eEEEecCCCcc---CceeECCCCCEEEEEEecCC
Confidence 345667788899999999999999987654 469999998653 23344444443 4689999999888765 577
Q ss_pred cEE--EEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEe-CCCcEEEEECC--CCeEEEeecCccCceEEEEEeeCCC
Q 009569 340 AIR--RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDLD--GRELESWKGQKTLRISDMAITDDGK 414 (532)
Q Consensus 340 ~i~--iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~~~ 414 (532)
.+. +||+.++.. ..+..+...+....|+|||+.++.++ .++...+|+++ +...... ... . ....|+|||+
T Consensus 271 ~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~--~-~~~~~SpDG~ 345 (429)
T PRK01742 271 VLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR--G-YSAQISADGK 345 (429)
T ss_pred cEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC--C-CCccCCCCCC
Confidence 655 456666654 44555666688899999999877655 56777777764 4433322 222 2 4578999999
Q ss_pred EEEEEECCCeEEEEECCCCceeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecC--CCCcceeEEeccccc
Q 009569 415 RIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE--SDPKLVSRYKGHKRA 486 (532)
Q Consensus 415 ~l~~~~~dg~I~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~ 486 (532)
.+++++.++ +.+||+.++............+++|+|||++|+.++.++.+.+|++. ++ .....+.+|...
T Consensus 346 ~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G-~~~~~l~~~~g~ 417 (429)
T PRK01742 346 TLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADG-RFKARLPGSDGQ 417 (429)
T ss_pred EEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC-CceEEccCCCCC
Confidence 998887764 56699988763222222234678899999999999999988888763 34 677778777654
No 188
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.4e-16 Score=151.39 Aligned_cols=255 Identities=20% Similarity=0.239 Sum_probs=197.8
Q ss_pred EEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCC--CCCEEEEeeCCCcEEE
Q 009569 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQEEAIRR 343 (532)
Q Consensus 266 ~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~i 343 (532)
..|.+|.+.|..+.|+..|..|++||.|..|.+||+..+. ....-..+|...|....|-| +...+++++.||.|++
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~--~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS--PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccC--cccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 4577899999999999999999999999999999998653 23344568999998888888 3568999999999998
Q ss_pred EECCC-CcE--EEEeeccCCceEEEEEeeCC-CeEEEEeCCCcEEEEECCCCeE---EEeecCccC---ceEEEEEeeCC
Q 009569 344 WDVNS-GEC--LHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGREL---ESWKGQKTL---RISDMAITDDG 413 (532)
Q Consensus 344 wd~~~-~~~--~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~---~v~~~~~s~~~ 413 (532)
=.+.. +.+ ...+..|.++|.-++.-|+. ..|.+++.|+.+.-+|++.... ......+.. ..+.++.+|..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 87743 333 23455788899999998854 5588999999999999975321 112222222 56888999865
Q ss_pred C-EEEEEECCCeEEEEECCCCc-e-------eee------ecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCC-C---
Q 009569 414 K-RIISICREAAILLLDREANF-E-------RWI------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD-P--- 474 (532)
Q Consensus 414 ~-~l~~~~~dg~I~iwd~~~~~-~-------~~~------~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~-~--- 474 (532)
. .+++++.|-.+++||.+.-. . .+. .....|++++++.++.-|++...|-.|+++.-..+ +
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP 373 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence 4 88999999999999987643 1 111 22346999999999888888888999999954322 1
Q ss_pred -------cceeE-EeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCCce
Q 009569 475 -------KLVSR-YKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPFAK 522 (532)
Q Consensus 475 -------~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~~~ 522 (532)
..+.. |+||.+..++-.+-||.|...|+++||.-|.|.||+-.+++..
T Consensus 374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii 429 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII 429 (559)
T ss_pred CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence 23333 8999998888888999999999999999999999999987643
No 189
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=5.6e-16 Score=138.08 Aligned_cols=224 Identities=17% Similarity=0.254 Sum_probs=168.7
Q ss_pred CCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCC-CEEEEeeCC-------CcEEEEECCCC---------cEEEE
Q 009569 292 KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND-HQLLTCGQE-------EAIRRWDVNSG---------ECLHV 354 (532)
Q Consensus 292 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~d-------g~i~iwd~~~~---------~~~~~ 354 (532)
.|+.|.+.++..++..-....+..|.+.|..++-+|-. ..|+++..+ -.+.||.+... +++..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 47889988888766555567788899999999999954 556665442 24789998532 23334
Q ss_pred ee-ccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeE--EEee----cCccCceEEEEEee--CCCEEEEEECCCeE
Q 009569 355 YE-KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL--ESWK----GQKTLRISDMAITD--DGKRIISICREAAI 425 (532)
Q Consensus 355 ~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~----~~~~~~v~~~~~s~--~~~~l~~~~~dg~I 425 (532)
+. .+-+.|.|+.|.|++..+++-. |..|.+|++..... .... ..+....++-+|+| +|+.+++ ..|+++
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl 195 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTL 195 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcE
Confidence 43 3445899999999999888765 88999999975332 1111 11233677889998 6666666 578999
Q ss_pred EEEECCCCc---eeeeecCCceeEEEEcCCCC-EEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcE
Q 009569 426 LLLDREANF---ERWIEEEEVITSFSLSKDNK-YLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAF 501 (532)
Q Consensus 426 ~iwd~~~~~---~~~~~~~~~i~~~~~sp~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~ 501 (532)
..||+++.. ..-..|...+..+.|+|+.+ +|++|+.||.|+|||.+....++.++.+|..-++.+++- ....++
T Consensus 196 ~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn--~~hdqL 273 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFN--PEHDQL 273 (370)
T ss_pred EEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEec--CccceE
Confidence 999999876 33346778899999999875 567888999999999998888999999999987775543 345689
Q ss_pred EEEEeCCCcEEEEeCCCC
Q 009569 502 IASGSEDSQVNIFLSFSP 519 (532)
Q Consensus 502 l~sgs~dg~i~iw~~~~~ 519 (532)
|++||.|..|.+|...+-
T Consensus 274 iLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 274 ILSGGSDSAVNLSCASSV 291 (370)
T ss_pred EEecCCCceeEEEecccc
Confidence 999999999999988653
No 190
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.5e-15 Score=156.35 Aligned_cols=275 Identities=19% Similarity=0.258 Sum_probs=189.6
Q ss_pred ccccccccCCCCCceeeccCCccCCCCCcceeEEcccc---cccEEEEEEcc--CCCEEEEEeCCCeEEEEEeecC--Ce
Q 009569 234 RDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAH---SDEVWFLQFSH--DGKYLASSSKDQSAIIWEVKED--GQ 306 (532)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h---~~~V~~v~~s~--~g~~las~s~dg~i~iwd~~~~--~~ 306 (532)
...|++.......+.+|+... .+.+..+..+ ...|+.+.+-. |..++.+|+.||.|+||+-... ++
T Consensus 1075 f~p~i~~ad~r~~i~vwd~e~-------~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~ 1147 (1387)
T KOG1517|consen 1075 FEPQIAAADDRERIRVWDWEK-------GRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKK 1147 (1387)
T ss_pred CCceeEEcCCcceEEEEeccc-------CceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCC
Confidence 334555555555666776543 2333333322 35788888877 5568999999999999986533 23
Q ss_pred eEEEEEeec---C----CCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeecc-CCceEEEEEee-CCCeEEEE
Q 009569 307 VSLKHRLSG---H----RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT-GVGLISCGWFL-DGGGIFAG 377 (532)
Q Consensus 307 ~~~~~~~~~---h----~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~~-~~~~l~~~ 377 (532)
.+.+..+.+ + .+.-.-+.|.....+|+++|.-..|+|||.....++..+... ...++++.-+. .|+.+++|
T Consensus 1148 ~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AG 1227 (1387)
T KOG1517|consen 1148 PELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAG 1227 (1387)
T ss_pred ceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEe
Confidence 334333322 1 122245678777667777777889999999988877766533 44566665443 57999999
Q ss_pred eCCCcEEEEECCCC----eEEEeecCccCc--eEEEEEeeCCCE-EEEEECCCeEEEEECCCCc-e---eeeec---CCc
Q 009569 378 MTDKSICLWDLDGR----ELESWKGQKTLR--ISDMAITDDGKR-IISICREAAILLLDREANF-E---RWIEE---EEV 443 (532)
Q Consensus 378 ~~dg~i~iwd~~~~----~~~~~~~~~~~~--v~~~~~s~~~~~-l~~~~~dg~I~iwd~~~~~-~---~~~~~---~~~ 443 (532)
..||.|++||.+.. .+..+..+. .. |..+.+.+.|-. +++|+.+|.|++||++... . ....| .+.
T Consensus 1228 faDGsvRvyD~R~a~~ds~v~~~R~h~-~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~ 1306 (1387)
T KOG1517|consen 1228 FADGSVRVYDRRMAPPDSLVCVYREHN-DVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSA 1306 (1387)
T ss_pred ecCCceEEeecccCCccccceeecccC-CcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCcc
Confidence 99999999999752 233333333 34 899999987654 9999999999999999843 2 22222 235
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEecccc-----ceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 444 ITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR-----ARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 444 i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
.+++..+++...+++|+. +.|+||++... .+..++.+.. .....+..| +|..-++|+|+.|..|.||....
T Consensus 1307 lTal~VH~hapiiAsGs~-q~ikIy~~~G~--~l~~~k~n~~F~~q~~gs~scL~F-HP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1307 LTALTVHEHAPIIASGSA-QLIKIYSLSGE--QLNIIKYNPGFMGQRIGSVSCLAF-HPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred ceeeeeccCCCeeeecCc-ceEEEEecChh--hhcccccCcccccCcCCCcceeee-cchhHhhhhccCCceEEEeecCC
Confidence 999999999999999997 99999998764 4444332211 112244566 99999999999999999998876
Q ss_pred CC
Q 009569 519 PF 520 (532)
Q Consensus 519 ~~ 520 (532)
+.
T Consensus 1383 ~~ 1384 (1387)
T KOG1517|consen 1383 PR 1384 (1387)
T ss_pred cC
Confidence 54
No 191
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.6e-16 Score=152.86 Aligned_cols=211 Identities=20% Similarity=0.298 Sum_probs=160.5
Q ss_pred eEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCC--CCCEEEEeeCCCcEE
Q 009569 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQEEAIR 342 (532)
Q Consensus 265 ~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~ 342 (532)
-+.|.||++.|+|+.|+.+|.+|++||.|-.+.|||.-..+ .....-.+|...|.++.|-| +...+++|..|..|+
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K--llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK--LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcc--eeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 45688999999999999999999999999999999997432 22333468999999999999 567999999999999
Q ss_pred EEECCC----------CcEEEEeeccCCceEEEEEeeCC-CeEEEEeCCCcEEEEECCCCeEE-----------EeecCc
Q 009569 343 RWDVNS----------GECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELE-----------SWKGQK 400 (532)
Q Consensus 343 iwd~~~----------~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~~ 400 (532)
++|+.. .+....+..|...|..++..|++ ..+.+++.||+|+-+|++..... .+...-
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 999974 23345567788889999999988 78899999999999999852111 111111
Q ss_pred cCceEEEEEeeC-CCEEEEEECCCeEEEEECCCCc-------------------eeee--ecC-----------CceeEE
Q 009569 401 TLRISDMAITDD-GKRIISICREAAILLLDREANF-------------------ERWI--EEE-----------EVITSF 447 (532)
Q Consensus 401 ~~~v~~~~~s~~-~~~l~~~~~dg~I~iwd~~~~~-------------------~~~~--~~~-----------~~i~~~ 447 (532)
-...+++++|. ..+|++|+.|...++||.+... ...+ +|- ..++-+
T Consensus 201 -ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v 279 (758)
T KOG1310|consen 201 -IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV 279 (758)
T ss_pred -heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence 25678899995 4588999999999999953211 0000 110 115668
Q ss_pred EEcCCCCEEEEEecCCeEEEEecCCCCccee
Q 009569 448 SLSKDNKYLLVNLINQEIHLWSIESDPKLVS 478 (532)
Q Consensus 448 ~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~ 478 (532)
+|+|+|.-|++.-....|+++|+.....+..
T Consensus 280 tfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 280 TFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred EECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 8999998888887778899999988733333
No 192
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.70 E-value=2.1e-15 Score=134.61 Aligned_cols=233 Identities=15% Similarity=0.248 Sum_probs=170.5
Q ss_pred cccccEEEEEEccCCC-----EEEEEeCCCeEEEEEeecC-CeeEEEEEe-----ecCCCCeEEEEeCC-CCCEEEEeeC
Q 009569 270 AHSDEVWFLQFSHDGK-----YLASSSKDQSAIIWEVKED-GQVSLKHRL-----SGHRKPVFTVSWSP-NDHQLLTCGQ 337 (532)
Q Consensus 270 ~h~~~V~~v~~s~~g~-----~las~s~dg~i~iwd~~~~-~~~~~~~~~-----~~h~~~v~~l~~s~-~~~~l~s~~~ 337 (532)
.|.-+++.+.|.|+.. +|||++ ..+++|.+... ..+.+...+ ..+..++++..|+. +.++|.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 4888999999999763 566654 47999999742 222222222 34667899999987 6689999999
Q ss_pred CCcEEEEECCCCc---EEEEeeccCCceEEEEEeeCC-CeEEEEeCCCcEEEEECCCCeEEEe---ecCccCceEEEEEe
Q 009569 338 EEAIRRWDVNSGE---CLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELESW---KGQKTLRISDMAIT 410 (532)
Q Consensus 338 dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~s 410 (532)
|-+..|||++++. ....+-.|...|..++|...+ ..|++.+.||.+++||++..+-.++ ......+...++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 9999999999873 355677899999999999854 4678899999999999986443222 22323478889999
Q ss_pred e-CCCEEEEEECC-CeEEEEECCCCc---eeeeecCCceeEEEEcCCC-CEEEEEecCCeEEEEecCCCCc-----ceeE
Q 009569 411 D-DGKRIISICRE-AAILLLDREANF---ERWIEEEEVITSFSLSKDN-KYLLVNLINQEIHLWSIESDPK-----LVSR 479 (532)
Q Consensus 411 ~-~~~~l~~~~~d-g~I~iwd~~~~~---~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~i~iwd~~~~~~-----~~~~ 479 (532)
+ |-+++++-..| ..|.+.|++... ..+..|.+.|+.++|.|.. ..|++++.|..+.+||+..... ++..
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila 331 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA 331 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence 8 45677765544 569999999877 6778999999999999964 7899999999999999976422 2333
Q ss_pred EeccccceEEEEEccCCCCCcEEEEEeC
Q 009569 480 YKGHKRARFVIRSCFGGFEQAFIASGSE 507 (532)
Q Consensus 480 ~~~~~~~~~~i~~~~~s~d~~~l~sgs~ 507 (532)
+. .... +-.+.|.+..+.+|+.+..
T Consensus 332 y~-a~~E--VNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 332 YT-AGGE--VNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred hh-ccce--eeeeeecccCCCEEEEEec
Confidence 33 1222 3345553456677776643
No 193
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.69 E-value=3.5e-14 Score=140.23 Aligned_cols=228 Identities=13% Similarity=0.131 Sum_probs=156.8
Q ss_pred EEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEee-CCCcEEEEECC-CCcE--EEEeeccCCceE
Q 009569 288 ASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QEEAIRRWDVN-SGEC--LHVYEKTGVGLI 363 (532)
Q Consensus 288 as~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~-~~~~--~~~~~~~~~~i~ 363 (532)
++...++.|.+|++.+++.+..+..+. +.+....++++|++++|++++ .++.|.+|++. +++. +.... ......
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCce
Confidence 344678999999997555655666664 345577889999999887765 47889999996 3432 22222 234567
Q ss_pred EEEEeeCCCeEEEEe-CCCcEEEEECCC-Ce---EEEeecCccCceEEEEEeeCCCEEEEEE-CCCeEEEEECCCCc-ee
Q 009569 364 SCGWFLDGGGIFAGM-TDKSICLWDLDG-RE---LESWKGQKTLRISDMAITDDGKRIISIC-REAAILLLDREANF-ER 436 (532)
Q Consensus 364 ~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~I~iwd~~~~~-~~ 436 (532)
.++++|+++++++++ .++.|.+|+++. +. ........ .....++++|+++++++++ .++.|.+||+.+.. ..
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL-EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC-CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 899999999988876 488999999963 21 11111121 2567889999999886655 56999999997632 11
Q ss_pred -------eeecCCceeEEEEcCCCCEEEEEec-CCeEEEEecCCCC---cceeEEeccc----cceEEEEEccCCCCCcE
Q 009569 437 -------WIEEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDP---KLVSRYKGHK----RARFVIRSCFGGFEQAF 501 (532)
Q Consensus 437 -------~~~~~~~i~~~~~sp~~~~l~~~~~-dg~i~iwd~~~~~---~~~~~~~~~~----~~~~~i~~~~~s~d~~~ 501 (532)
..........+.|+|+++++++++. ++.|.+|++.... +.+..+.... ...+...+.+ +|++++
T Consensus 163 ~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~-~pdg~~ 241 (330)
T PRK11028 163 AQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHI-TPDGRH 241 (330)
T ss_pred ccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEE-CCCCCE
Confidence 1122344678999999999988876 8999999997321 2233333221 1222334556 899999
Q ss_pred EEEEeC-CCcEEEEeCCCC
Q 009569 502 IASGSE-DSQVNIFLSFSP 519 (532)
Q Consensus 502 l~sgs~-dg~i~iw~~~~~ 519 (532)
++++.. ++.|.+|++...
T Consensus 242 lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 242 LYACDRTASLISVFSVSED 260 (330)
T ss_pred EEEecCCCCeEEEEEEeCC
Confidence 998854 789999998653
No 194
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=3.6e-15 Score=152.07 Aligned_cols=209 Identities=13% Similarity=0.088 Sum_probs=146.3
Q ss_pred CCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCC---CcEEEEECCCCcEEEEeeccCCceEEEEEee
Q 009569 293 DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE---EAIRRWDVNSGECLHVYEKTGVGLISCGWFL 369 (532)
Q Consensus 293 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~ 369 (532)
+..|.+||..... ...+..|...+.++.|||||+.|+.++.+ ..|++||+.+++.... ....+.....+|+|
T Consensus 183 ~~~i~i~d~dg~~----~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFN----QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSP 257 (429)
T ss_pred eEEEEEECCCCCC----ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECC
Confidence 4689999987432 24456788889999999999999988754 3699999988864322 22222344689999
Q ss_pred CCCeEEEEe-CCCcE--EEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEE-CCCeEEEEECCC--CceeeeecCCc
Q 009569 370 DGGGIFAGM-TDKSI--CLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-REAAILLLDREA--NFERWIEEEEV 443 (532)
Q Consensus 370 ~~~~l~~~~-~dg~i--~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~I~iwd~~~--~~~~~~~~~~~ 443 (532)
||+.|+.++ .+|.+ ++||+.++....+..+. ..+....|+|||+.|+.++ .++...+|++.. .......+..
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~- 335 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGA-GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG- 335 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCeEeeccCC-CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-
Confidence 999888765 57765 45577777666655443 3678899999999877665 567777777643 3333333333
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeC
Q 009569 444 ITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLS 516 (532)
Q Consensus 444 i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~ 516 (532)
.+..|+|||++|++.+.++ +.+||+.++ ........+.. -...| +|||++|+.++.+|.+.+|.+
T Consensus 336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g-~~~~lt~~~~~----~~~~~-sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDN-VVKQDLTSG-STEVLSSTFLD----ESPSI-SPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred -CCccCCCCCCEEEEEcCCC-EEEEECCCC-CeEEecCCCCC----CCceE-CCCCCEEEEEEcCCCceEEEE
Confidence 4678999999998887655 666999877 33222222211 12345 999999999999998888775
No 195
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.67 E-value=6.7e-16 Score=148.16 Aligned_cols=191 Identities=17% Similarity=0.252 Sum_probs=153.5
Q ss_pred cceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcE
Q 009569 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (532)
Q Consensus 262 ~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 341 (532)
.+.-....+|.+.|.|-.|+|||.-|+|++.||.|++|.-. +. ...++.....+|.|++|.|+.+.++.|. .+.+
T Consensus 94 ~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs--GM--LRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~ 168 (737)
T KOG1524|consen 94 ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS--GM--LRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHI 168 (737)
T ss_pred chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc--ch--HHHHHhhcCceeEEEEECCCCCceEEec-CCeE
Confidence 45566788999999999999999999999999999999865 21 2233444667899999999988777754 4567
Q ss_pred EEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEEC
Q 009569 342 RRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (532)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 421 (532)
.|=.+.....+-..+.|++-|.++.|++..+.+++|+.|-..++||-.+..+..-..+. .+|++++|+|+ +.++.++.
T Consensus 169 ~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~e-y~ITSva~npd-~~~~v~S~ 246 (737)
T KOG1524|consen 169 SIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEE-YAITSVAFNPE-KDYLLWSY 246 (737)
T ss_pred EEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhc-cceeeeeeccc-cceeeeee
Confidence 77777777777788999999999999999999999999999999999887776555444 49999999999 66666654
Q ss_pred CCeEEEEECCCCceeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEe
Q 009569 422 EAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (532)
Q Consensus 422 dg~I~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd 469 (532)
+ +.++= ....+.|..++||+||..+++|+..|.+.+-.
T Consensus 247 n-t~R~~---------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 247 N-TARFS---------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred e-eeeec---------CCCccceEEEEEcCCCceeeccccCceEEEee
Confidence 3 44421 23456799999999999999999999765543
No 196
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=3.9e-14 Score=130.21 Aligned_cols=269 Identities=18% Similarity=0.240 Sum_probs=181.2
Q ss_pred ccccccCCCCCceeeccCCccCCCCCcceeEEcc-cccccEEEEEEcc-CCCEEEEEeCCCeEEEEEeecCCeeE-----
Q 009569 236 SCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILE-AHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVS----- 308 (532)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~v~~s~-~g~~las~s~dg~i~iwd~~~~~~~~----- 308 (532)
.++.....|..+.+|++.. .+...++ .....|+|++|-| .+..|+.|+.. -|.+|.........
T Consensus 111 ~~fava~nddvVriy~kss--------t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~ 181 (445)
T KOG2139|consen 111 IAFAVATNDDVVRIYDKSS--------TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRM 181 (445)
T ss_pred hhhhhhccCcEEEEeccCC--------CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccccccc
Confidence 3444566777888887664 2222233 2456899999999 45677777765 57899875321110
Q ss_pred ------EEEEeecCCCCeEEEEeCCCCCEEEEeeC-CCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCC
Q 009569 309 ------LKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDK 381 (532)
Q Consensus 309 ------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 381 (532)
.+....+| .+|+++.|++||..+++++. |..|.|||..++.++.......+.++-+.|+||+.++++++-|+
T Consensus 182 ~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~da 260 (445)
T KOG2139|consen 182 MSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDA 260 (445)
T ss_pred ccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccc
Confidence 11223445 68999999999999999987 56899999999988776655667788999999999999999999
Q ss_pred cEEEEEC-CCCeEEEeecCccCceEEEEEeeCCCEEEEEE-CCCeEEEEECCCCc-----------eeee---------e
Q 009569 382 SICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISIC-REAAILLLDREANF-----------ERWI---------E 439 (532)
Q Consensus 382 ~i~iwd~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~I~iwd~~~~~-----------~~~~---------~ 439 (532)
..++|+. ++.....+..... .|...+|+|+|++|+.++ ....++-....... ...+ .
T Consensus 261 vfrlw~e~q~wt~erw~lgsg-rvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~a 339 (445)
T KOG2139|consen 261 VFRLWQENQSWTKERWILGSG-RVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICA 339 (445)
T ss_pred eeeeehhcccceecceeccCC-ceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhc
Confidence 9999965 4555556665555 899999999999776554 33333332222111 0000 1
Q ss_pred ----cCCceeEEEEcCCCCEEEEEecCC--------eEEEEecCCCCcceeE-Eec---cccceEEEEEccCCCCCcEEE
Q 009569 440 ----EEEVITSFSLSKDNKYLLVNLINQ--------EIHLWSIESDPKLVSR-YKG---HKRARFVIRSCFGGFEQAFIA 503 (532)
Q Consensus 440 ----~~~~i~~~~~sp~~~~l~~~~~dg--------~i~iwd~~~~~~~~~~-~~~---~~~~~~~i~~~~~s~d~~~l~ 503 (532)
..+++.+++|+|.|.+|++.-..+ .|.+||.+.. ..+.- +-+ ...+. .|.+.+.-.++.+|.
T Consensus 340 g~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~s-p~vels~cg~i~ge~P~-~IsF~pl~n~g~lLs 417 (445)
T KOG2139|consen 340 GQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKS-PPVELSYCGMIGGEYPA-YISFGPLKNEGRLLS 417 (445)
T ss_pred CcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccccc-CceEEEecccccCCCCc-eEEeeecccCCcEEE
Confidence 146788999999999999986544 3778888765 22221 112 22222 234444345677787
Q ss_pred EEeCCCcEEEEeCC
Q 009569 504 SGSEDSQVNIFLSF 517 (532)
Q Consensus 504 sgs~dg~i~iw~~~ 517 (532)
.+=..|.+.-|.+.
T Consensus 418 iaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 418 IAWSTGRIQRYPLT 431 (445)
T ss_pred EEeccCceEeeeeE
Confidence 77778888777654
No 197
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=2.5e-14 Score=145.55 Aligned_cols=213 Identities=13% Similarity=0.161 Sum_probs=148.9
Q ss_pred EEcccccccEEEEEEccCCCEEEEEe---CCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEe-eCCC--
Q 009569 266 QILEAHSDEVWFLQFSHDGKYLASSS---KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC-GQEE-- 339 (532)
Q Consensus 266 ~~l~~h~~~V~~v~~s~~g~~las~s---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg-- 339 (532)
+.+..+...+.+.+|||||+.||..+ .+..|.+|++.++. ...+..+.+ .+..+.|+|||+.|+.. +.+|
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~-~~~l~~~~~---~~~~~~~SPDG~~La~~~~~~g~~ 267 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VRQVASFPR---HNGAPAFSPDGSKLAFALSKTGSL 267 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC-eEEccCCCC---CcCCeEECCCCCEEEEEEcCCCCc
Confidence 44455677899999999999998754 34579999997653 233333333 34568999999988865 3344
Q ss_pred cEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCC-C--cEEEEECCCCeEEEeecCccCceEEEEEeeCCCEE
Q 009569 340 AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD-K--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRI 416 (532)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 416 (532)
.|++||+.+++..... .+...+....|+|||+.|+..+.+ + .|+++|+.++....+.... .......|+|||+++
T Consensus 268 ~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~-~~~~~~~~SpDG~~I 345 (429)
T PRK03629 268 NLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEG-SQNQDADVSSDGKFM 345 (429)
T ss_pred EEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCC-CCccCEEECCCCCEE
Confidence 5999999988765443 344567789999999988877654 3 4666677776655554332 246678999999999
Q ss_pred EEEECC---CeEEEEECCCCceeeeecCCceeEEEEcCCCCEEEEEecCCe---EEEEecCCCCcceeEEeccccc
Q 009569 417 ISICRE---AAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQE---IHLWSIESDPKLVSRYKGHKRA 486 (532)
Q Consensus 417 ~~~~~d---g~I~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~ 486 (532)
+..+.+ ..|.+||+.++...............|+|||++|+..+.++. +.++++.. .....+.+|...
T Consensus 346 a~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G--~~~~~l~~~~~~ 419 (429)
T PRK03629 346 VMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG--RFKARLPATDGQ 419 (429)
T ss_pred EEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC--CCeEECccCCCC
Confidence 887643 358899998877333333333457889999999999887764 67777744 455666666554
No 198
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.67 E-value=1.5e-15 Score=145.75 Aligned_cols=205 Identities=17% Similarity=0.250 Sum_probs=155.8
Q ss_pred EEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEE
Q 009569 286 YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISC 365 (532)
Q Consensus 286 ~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 365 (532)
.|+.++.||.+.+.+-. + +....+..|.+.|.+-.|+|||.-|++++.||.|++|. ++|-...++.....+|.|+
T Consensus 77 ~~~i~s~DGkf~il~k~-~---rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKS-A---RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA 151 (737)
T ss_pred eEEEEcCCceEEEeccc-c---hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE
Confidence 56667777777776543 1 34456678999999999999999999999999999999 4565555555667889999
Q ss_pred EEeeCCCeEEEEeCCCcEEEEECC-CCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc-eeeeecCCc
Q 009569 366 GWFLDGGGIFAGMTDKSICLWDLD-GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEV 443 (532)
Q Consensus 366 ~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~-~~~~~~~~~ 443 (532)
+|.|+.+.++.+.. +.+.|=-+. +..+..|..|.. -|.++.|++..+.+++|+.|-..++||-.... .....|+.+
T Consensus 152 ~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYA 229 (737)
T ss_pred EECCCCCceEEecC-CeEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeecccCcccccCChhccc
Confidence 99998877766543 456666664 455677776654 89999999999999999999999999987766 666789999
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEE
Q 009569 444 ITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIF 514 (532)
Q Consensus 444 i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw 514 (532)
|++++|.|+ +.+++++. ++.++ . ....+. +....| ++||..+++|+..|.+.+=
T Consensus 230 ITSva~npd-~~~~v~S~-nt~R~---~---------~p~~GS--ifnlsW-S~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 230 ITSVAFNPE-KDYLLWSY-NTARF---S---------SPRVGS--IFNLSW-SADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeeeeccc-cceeeeee-eeeee---c---------CCCccc--eEEEEE-cCCCceeeccccCceEEEe
Confidence 999999999 56665552 33331 1 111222 345666 9999999999999987553
No 199
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=3e-14 Score=145.02 Aligned_cols=245 Identities=16% Similarity=0.238 Sum_probs=169.5
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEEeec-CCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 009569 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKE-DGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS 348 (532)
Q Consensus 270 ~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 348 (532)
.|.-.++|.++||+++++|+|..||.|.+|.--. ...-.....+.=|...|.+++|+++|.+|++|+..|.+.+|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 4777799999999999999999999999997543 122223456677899999999999999999999999999999999
Q ss_pred CcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEe-----------ecCccCceEEEEEeeCCCEEE
Q 009569 349 GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW-----------KGQKTLRISDMAITDDGKRII 417 (532)
Q Consensus 349 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----------~~~~~~~v~~~~~s~~~~~l~ 417 (532)
++ .+-+..-.++|..+.++||+...+....|+.|.+....+..+... .....+-.+.++++|..+.++
T Consensus 283 ~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v 361 (792)
T KOG1963|consen 283 GK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV 361 (792)
T ss_pred CC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence 98 555666788999999999999999999999999987743211110 111122345566666555555
Q ss_pred EEECCCeEEEEECCCCc---------------------------------------------------------------
Q 009569 418 SICREAAILLLDREANF--------------------------------------------------------------- 434 (532)
Q Consensus 418 ~~~~dg~I~iwd~~~~~--------------------------------------------------------------- 434 (532)
..+..|.|.+||+.+..
T Consensus 362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~ 441 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNS 441 (792)
T ss_pred ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCc
Confidence 55566666666654322
Q ss_pred -------eeeeecCCceeEEEEcC-CC-CEEEEEecCCeEEEEecCCCCc-------ceeEEec--cccceEEEEEccCC
Q 009569 435 -------ERWIEEEEVITSFSLSK-DN-KYLLVNLINQEIHLWSIESDPK-------LVSRYKG--HKRARFVIRSCFGG 496 (532)
Q Consensus 435 -------~~~~~~~~~i~~~~~sp-~~-~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~--~~~~~~~i~~~~~s 496 (532)
....+|...+...++.+ .. ...++++.||.+++|-+..... -.+...+ |..+ +..++| +
T Consensus 442 kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~--i~a~~f-s 518 (792)
T KOG1963|consen 442 KTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTP--ITALCF-S 518 (792)
T ss_pred ceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCc--ccchhh-c
Confidence 00112443333333333 22 3788888999999999843211 0111122 3334 344677 9
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCC
Q 009569 497 FEQAFIASGSEDSQVNIFLSFSP 519 (532)
Q Consensus 497 ~d~~~l~sgs~dg~i~iw~~~~~ 519 (532)
.||..|+ .+.|+.|.+||..+.
T Consensus 519 ~dGslla-~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 519 QDGSLLA-VSFDDTITIWDYDTK 540 (792)
T ss_pred CCCcEEE-EecCCEEEEecCCCh
Confidence 9996654 668999999999883
No 200
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=5.1e-15 Score=135.09 Aligned_cols=189 Identities=13% Similarity=0.165 Sum_probs=145.9
Q ss_pred CEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEee--CCCeEEEEeCCCcEEEEECCCCe---EEEeecCccCce
Q 009569 330 HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFL--DGGGIFAGMTDKSICLWDLDGRE---LESWKGQKTLRI 404 (532)
Q Consensus 330 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v 404 (532)
..++++..+|.|++||..+++.+..|+++...+..+.|.. ....+.+|+.||+|++||++... ...+......+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688888999999999999999999999999999999987 46778999999999999998632 233444443466
Q ss_pred EEEEEeeCCCEEEEEE----CCCeEEEEECCCCc----eeeeecCCceeEEEEcCC-CCEEEEEecCCeEEEEecCCCCc
Q 009569 405 SDMAITDDGKRIISIC----REAAILLLDREANF----ERWIEEEEVITSFSLSKD-NKYLLVNLINQEIHLWSIESDPK 475 (532)
Q Consensus 405 ~~~~~s~~~~~l~~~~----~dg~I~iwd~~~~~----~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~i~iwd~~~~~~ 475 (532)
.+++.+-.++.+++|+ .+-.|.+||++..+ .....|...|+++.|+|. .++|++|+.||-|.+||+....+
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 7777766777888775 46679999999877 344578999999999995 58999999999999999975421
Q ss_pred --ceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCC
Q 009569 476 --LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPF 520 (532)
Q Consensus 476 --~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~ 520 (532)
.+.....+...+. .+.|.++.-+.|.+-+..+..++|+++.+.
T Consensus 201 eDaL~~viN~~sSI~--~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 201 EDALLHVINHGSSIH--LIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred hhhHHHhhcccceee--eeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 2222223344333 345545554679999999999999999875
No 201
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1.7e-14 Score=148.68 Aligned_cols=252 Identities=16% Similarity=0.192 Sum_probs=173.1
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCC--CCCEEEEeeCCCcEEEEECC-C--
Q 009569 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQEEAIRRWDVN-S-- 348 (532)
Q Consensus 274 ~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~iwd~~-~-- 348 (532)
.-..+.|+|=...++++...-.|+|||.+.+..+.....-......|+.+.+-. |..++++|+.||.|+||+-- +
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 455678888888899888777999999997643322222122345688888765 45689999999999999752 2
Q ss_pred --CcEEEEeec-------cCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEE-eecCccCceEEEEEee-CCCEEE
Q 009569 349 --GECLHVYEK-------TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES-WKGQKTLRISDMAITD-DGKRII 417 (532)
Q Consensus 349 --~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~-~~~~l~ 417 (532)
.+.+..+.. ..+.-.-+.|.....++++++.-..|+|||.....+.. +.......|+++.-+- .|+.++
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence 223332221 11111345677766677777777899999997654433 3333344677766543 478999
Q ss_pred EEECCCeEEEEECCCCc-----eeeeecCCc--eeEEEEcCCCC-EEEEEecCCeEEEEecCCC-CcceeEEeccccceE
Q 009569 418 SICREAAILLLDREANF-----ERWIEEEEV--ITSFSLSKDNK-YLLVNLINQEIHLWSIESD-PKLVSRYKGHKRARF 488 (532)
Q Consensus 418 ~~~~dg~I~iwd~~~~~-----~~~~~~~~~--i~~~~~sp~~~-~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~ 488 (532)
+|..||.|++||.+... .....|... |..+.+.+.|- .|++|+.+|.|++||++.. .+...++..|.....
T Consensus 1226 AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs 1305 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGS 1305 (1387)
T ss_pred EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCc
Confidence 99999999999998754 445566666 99999999774 5999999999999999984 222233334332111
Q ss_pred EEEEccCCCCCcEEEEEeCCCcEEEEeCCCCCceeeec
Q 009569 489 VIRSCFGGFEQAFIASGSEDSQVNIFLSFSPFAKKIKY 526 (532)
Q Consensus 489 ~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~~~~~~~ 526 (532)
.+.+.+.+++...||+|+. +.|+||++.......++|
T Consensus 1306 ~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~ 1342 (1387)
T KOG1517|consen 1306 ALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKY 1342 (1387)
T ss_pred cceeeeeccCCCeeeecCc-ceEEEEecChhhhccccc
Confidence 1333344888999999998 999999998876655544
No 202
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=5.3e-13 Score=123.36 Aligned_cols=237 Identities=16% Similarity=0.150 Sum_probs=163.7
Q ss_pred cEEEEEEccCCCEEEEEeCC--CeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcE
Q 009569 274 EVWFLQFSHDGKYLASSSKD--QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351 (532)
Q Consensus 274 ~V~~v~~s~~g~~las~s~d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 351 (532)
.|--+-|+. .++|..+.+ +.+++.+.+.+..+ +... ...+|.++.++. +.|+++-.+ .|+|||+++.+.
T Consensus 48 ~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~I-Ce~~---fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~Mkl 118 (391)
T KOG2110|consen 48 SIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTI-CEIF---FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKL 118 (391)
T ss_pred EEEEeeccc--ceeEEEecCCCceEEEEEcccCceE-EEEe---cCCceEEEEEcc--ceEEEEEcc-cEEEEeccccee
Confidence 344455544 456655544 45888888754222 2222 356789999864 467776655 499999999999
Q ss_pred EEEeecc---CCceEEEEEeeCCCeEEEE--eCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCe-E
Q 009569 352 LHVYEKT---GVGLISCGWFLDGGGIFAG--MTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAA-I 425 (532)
Q Consensus 352 ~~~~~~~---~~~i~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-I 425 (532)
++++... ...+.++.+++.+.+++.- ...|.|.+||..+-........|.+.+.+++|+++|.+||+++..|+ |
T Consensus 119 LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVI 198 (391)
T KOG2110|consen 119 LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVI 198 (391)
T ss_pred ehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEE
Confidence 8887643 4446666666666677763 35689999999887666666677789999999999999999998887 8
Q ss_pred EEEECCCCcee--eee--cCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCc--------------------------
Q 009569 426 LLLDREANFER--WIE--EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK-------------------------- 475 (532)
Q Consensus 426 ~iwd~~~~~~~--~~~--~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~-------------------------- 475 (532)
||+.+.+++.. +.. ....|.+++|+|++++|++.+..++|++|.+.....
T Consensus 199 RVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps 278 (391)
T KOG2110|consen 199 RVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPS 278 (391)
T ss_pred EEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcch
Confidence 99999888722 221 134688999999999999999999999998864200
Q ss_pred ce----------eEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC
Q 009569 476 LV----------SRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSP 519 (532)
Q Consensus 476 ~~----------~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~ 519 (532)
.+ .+.+........++...-.+....+..++.||.++.|.+...
T Consensus 279 ~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 279 QVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred hhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 00 000111111111111111346778899999999999998753
No 203
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.1e-13 Score=140.94 Aligned_cols=219 Identities=12% Similarity=0.131 Sum_probs=151.9
Q ss_pred CeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeC---CCcEEEEECCCCcEEEEeeccCCceEEEEEeeC
Q 009569 294 QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ---EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD 370 (532)
Q Consensus 294 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 370 (532)
..|.+||...... ..+..+...+.+.+|||||+.|+..+. +..|.+|++.+++..... .....+....|+||
T Consensus 179 ~~l~~~d~dg~~~----~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPD 253 (429)
T PRK03629 179 YELRVSDYDGYNQ----FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPD 253 (429)
T ss_pred eeEEEEcCCCCCC----EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCC
Confidence 3688888874322 333456678999999999999887653 347999999888653322 22333456899999
Q ss_pred CCeEEEE-eCCC--cEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECC-C--eEEEEECCCCc-eeeeecCCc
Q 009569 371 GGGIFAG-MTDK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE-A--AILLLDREANF-ERWIEEEEV 443 (532)
Q Consensus 371 ~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~I~iwd~~~~~-~~~~~~~~~ 443 (532)
|+.|+.. +.+| .|++||++++.......... .+....|+|||+.|+.++.+ + .|+++|+.++. ..+......
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~-~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~ 332 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS-NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQ 332 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCC-CcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCC
Confidence 9988865 3344 59999999887776655443 67889999999998877754 3 56666777765 344444445
Q ss_pred eeEEEEcCCCCEEEEEecC---CeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCc---EEEEeCC
Q 009569 444 ITSFSLSKDNKYLLVNLIN---QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQ---VNIFLSF 517 (532)
Q Consensus 444 i~~~~~sp~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~---i~iw~~~ 517 (532)
.....|+|||++|+..+.+ ..|++||+.++ . ...+..... .....| +|||++|+.++.++. +++|++.
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g-~-~~~Lt~~~~---~~~p~~-SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG-G-VQVLTDTFL---DETPSI-APNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCC-C-eEEeCCCCC---CCCceE-CCCCCEEEEEEcCCCceEEEEEECC
Confidence 6678999999999876543 35889999876 3 333332211 122445 899999999988764 7888886
Q ss_pred CCCceee
Q 009569 518 SPFAKKI 524 (532)
Q Consensus 518 ~~~~~~~ 524 (532)
......+
T Consensus 407 G~~~~~l 413 (429)
T PRK03629 407 GRFKARL 413 (429)
T ss_pred CCCeEEC
Confidence 6554444
No 204
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=4.8e-14 Score=144.25 Aligned_cols=206 Identities=13% Similarity=0.125 Sum_probs=150.3
Q ss_pred cceeEEcccccccEEEEEEccCCCEEEEEeC---CCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEE-EeeC
Q 009569 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSK---DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLL-TCGQ 337 (532)
Q Consensus 262 ~~~~~~l~~h~~~V~~v~~s~~g~~las~s~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~ 337 (532)
+...+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.++.. ..+..+.+.+...+|+|||+.|+ +.+.
T Consensus 191 g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~----~~l~~~~g~~~~~~~SPDG~~la~~~~~ 266 (435)
T PRK05137 191 GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR----ELVGNFPGMTFAPRFSPDGRKVVMSLSQ 266 (435)
T ss_pred CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE----EEeecCCCcccCcEECCCCCEEEEEEec
Confidence 4445566678889999999999999988763 46899999986532 23445666778899999998775 4455
Q ss_pred CCc--EEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeC-CC--cEEEEECCCCeEEEeecCccCceEEEEEeeC
Q 009569 338 EEA--IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DK--SICLWDLDGRELESWKGQKTLRISDMAITDD 412 (532)
Q Consensus 338 dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 412 (532)
++. |++||+.+++.. .+..+........|+|||+.++..+. +| .|++||+.++....+.... ..+....|+||
T Consensus 267 ~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~-~~~~~~~~Spd 344 (435)
T PRK05137 267 GGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGG-GRYSTPVWSPR 344 (435)
T ss_pred CCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCC-CcccCeEECCC
Confidence 554 888899887654 45555555677899999999887764 33 6888999887666655433 35677899999
Q ss_pred CCEEEEEECC---CeEEEEECCCCceeeeecCCceeEEEEcCCCCEEEEEecC------CeEEEEecCCC
Q 009569 413 GKRIISICRE---AAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLIN------QEIHLWSIESD 473 (532)
Q Consensus 413 ~~~l~~~~~d---g~I~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d------g~i~iwd~~~~ 473 (532)
|+.|+..+.+ ..|.+||+.++..........+..+.|+|||+.|+..+.+ ..++++|+...
T Consensus 345 G~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 345 GDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 9999887643 3688999876654333334457789999999998876543 25778887654
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=2.7e-15 Score=140.71 Aligned_cols=193 Identities=18% Similarity=0.196 Sum_probs=150.7
Q ss_pred EEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeec--
Q 009569 321 FTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG-- 398 (532)
Q Consensus 321 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-- 398 (532)
..++|+.+|..+++++.||+++||++.+...+.....|...|.++.|+|||+.|++-+.| ...||+.+++.......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 689999999999999999999999988888777788899999999999999999999999 89999998764333333
Q ss_pred CccCceEEEEEeeCC---CEE--EEEECCCeEEEEECCCCc-------eeeeecCCceeEEEEcCCCCEEEEEecCCeEE
Q 009569 399 QKTLRISDMAITDDG---KRI--ISICREAAILLLDREANF-------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIH 466 (532)
Q Consensus 399 ~~~~~v~~~~~s~~~---~~l--~~~~~dg~I~iwd~~~~~-------~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~ 466 (532)
........+.|+.|+ .+. +.....+.|+.||+.... .+.......|++++.++||++++.|+.||.|-
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 122256677788776 333 233355667777765433 23334456799999999999999999999999
Q ss_pred EEecCCCCcceeEE-eccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 467 LWSIESDPKLVSRY-KGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 467 iwd~~~~~~~~~~~-~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
|++..+. +.++-. +.|.. .+..+.| +||.+++++.+.|....+..+.-
T Consensus 307 i~~~~~l-q~~~~vk~aH~~--~VT~ltF-~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 307 IYDAKSL-QRLQYVKEAHLG--FVTGLTF-SPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEecee-eeeEeehhhhee--eeeeEEE-cCCcCcccccccCCceeEEEEee
Confidence 9999887 444433 45554 4556777 99999999999999998888765
No 206
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=5.3e-14 Score=143.76 Aligned_cols=213 Identities=18% Similarity=0.145 Sum_probs=148.4
Q ss_pred ceeEEcccccccEEEEEEccCCCEEEEEeC---CCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEE-EeeCC
Q 009569 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSK---DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLL-TCGQE 338 (532)
Q Consensus 263 ~~~~~l~~h~~~V~~v~~s~~g~~las~s~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~d 338 (532)
...+.+..|...+.+.+|+|||+.|+.++. +..|.+||+.++.. .. +..+.+...++.|+|||+.|+ +.+.+
T Consensus 194 ~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-~~---l~~~~g~~~~~~~SpDG~~l~~~~s~~ 269 (433)
T PRK04922 194 YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-EL---VASFRGINGAPSFSPDGRRLALTLSRD 269 (433)
T ss_pred CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-EE---eccCCCCccCceECCCCCEEEEEEeCC
Confidence 344456667788999999999999998764 34699999986532 22 233344456789999998775 44555
Q ss_pred C--cEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeC-CCc--EEEEECCCCeEEEeecCccCceEEEEEeeCC
Q 009569 339 E--AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DKS--ICLWDLDGRELESWKGQKTLRISDMAITDDG 413 (532)
Q Consensus 339 g--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 413 (532)
| .|++||+.+++.. .+..+.......+|+|||+.++.++. +|. |+++|+.++....+.... ......+|+|||
T Consensus 270 g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g-~~~~~~~~SpDG 347 (433)
T PRK04922 270 GNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG-NYNARASVSPDG 347 (433)
T ss_pred CCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCC-CCccCEEECCCC
Confidence 5 5999999888754 34445445567899999998887764 444 777788776655444322 245578999999
Q ss_pred CEEEEEECCC---eEEEEECCCCceeeeecCCceeEEEEcCCCCEEEEEecC---CeEEEEecCCCCcceeEEecc
Q 009569 414 KRIISICREA---AILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLIN---QEIHLWSIESDPKLVSRYKGH 483 (532)
Q Consensus 414 ~~l~~~~~dg---~I~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~ 483 (532)
+.|+..+.++ .|.+||+.++......+........|+|||++++..+.+ +.|+++++... ....+..+
T Consensus 348 ~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~--~~~~l~~~ 421 (433)
T PRK04922 348 KKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR--VRQRLVSA 421 (433)
T ss_pred CEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC--ceEEcccC
Confidence 9998876443 699999988774444444445678999999988877653 35788887543 44445443
No 207
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.5e-13 Score=140.61 Aligned_cols=219 Identities=10% Similarity=0.036 Sum_probs=154.4
Q ss_pred CeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeC---CCcEEEEECCCCcEEEEeeccCCceEEEEEeeC
Q 009569 294 QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ---EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD 370 (532)
Q Consensus 294 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 370 (532)
..|.+||.... ....+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+....|+||
T Consensus 182 ~~l~~~d~dg~----~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPD 256 (435)
T PRK05137 182 KRLAIMDQDGA----NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPD 256 (435)
T ss_pred eEEEEECCCCC----CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCC
Confidence 46888887532 22445678889999999999999888764 468999999988754 34445566778899999
Q ss_pred CCeEEE-EeCCC--cEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEEC-C--CeEEEEECCCCc-eeeeecCCc
Q 009569 371 GGGIFA-GMTDK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR-E--AAILLLDREANF-ERWIEEEEV 443 (532)
Q Consensus 371 ~~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d--g~I~iwd~~~~~-~~~~~~~~~ 443 (532)
|+.++. .+.++ .|++||+.++....+.... .......|+|||+.|+..+. + ..|++||+.++. ..+......
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~-~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~ 335 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSP-AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGR 335 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCceEEccCCC-CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCc
Confidence 998764 44555 4888899888776665443 35677899999999887764 3 368999988776 444444556
Q ss_pred eeEEEEcCCCCEEEEEecC---CeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCC------CcEEEE
Q 009569 444 ITSFSLSKDNKYLLVNLIN---QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED------SQVNIF 514 (532)
Q Consensus 444 i~~~~~sp~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~d------g~i~iw 514 (532)
+....|+|||++|+....+ ..|.+||+.++ . ...+... .. .-...| +|||+.|+..+.+ ..++++
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~-~-~~~lt~~-~~--~~~p~~-spDG~~i~~~~~~~~~~~~~~L~~~ 409 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS-G-ERILTSG-FL--VEGPTW-APNGRVIMFFRQTPGSGGAPKLYTV 409 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCCC-c-eEeccCC-CC--CCCCeE-CCCCCEEEEEEccCCCCCcceEEEE
Confidence 7778999999999887643 36888887654 2 2333221 11 122445 9999998765543 368888
Q ss_pred eCCCCCceee
Q 009569 515 LSFSPFAKKI 524 (532)
Q Consensus 515 ~~~~~~~~~~ 524 (532)
++..+....+
T Consensus 410 dl~g~~~~~l 419 (435)
T PRK05137 410 DLTGRNEREV 419 (435)
T ss_pred ECCCCceEEc
Confidence 9887665544
No 208
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.64 E-value=7.7e-15 Score=129.36 Aligned_cols=232 Identities=14% Similarity=0.183 Sum_probs=170.3
Q ss_pred HHhcccccccccCCCCCceeeccCCccCCCCCcceeEEcc-cccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeE
Q 009569 230 LDVQRDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILE-AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVS 308 (532)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~ 308 (532)
+-+|.+..++.+...+.+.+|.-.+ ......++ .|...|+.+..-|+ ..+.+-+.|+.+.+|++.....+
T Consensus 20 ~~fqa~~rL~sg~~~G~V~~w~lqt-------~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i- 90 (323)
T KOG0322|consen 20 VLFQANERLMSGLSVGIVKMWVLQT-------ERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFI- 90 (323)
T ss_pred hhhccchhhhcccccceEEEEEeec-------CccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceE-
Confidence 4456666688888889999997654 23344555 57788999998887 45778889999999998641110
Q ss_pred EEEEe---------------------------------------------------ecCCCCeEEEEeCC-CCC--EEEE
Q 009569 309 LKHRL---------------------------------------------------SGHRKPVFTVSWSP-NDH--QLLT 334 (532)
Q Consensus 309 ~~~~~---------------------------------------------------~~h~~~v~~l~~s~-~~~--~l~s 334 (532)
.++.+ .+..+.+.+..|.. ++. ++++
T Consensus 91 ~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~llla 170 (323)
T KOG0322|consen 91 SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLA 170 (323)
T ss_pred EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEE
Confidence 00000 00122344444322 222 4566
Q ss_pred eeCCCcEEEEECCCCcEE----------EEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCC----eEEEeecCc
Q 009569 335 CGQEEAIRRWDVNSGECL----------HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR----ELESWKGQK 400 (532)
Q Consensus 335 ~~~dg~i~iwd~~~~~~~----------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~ 400 (532)
|-.+|.|.+||+.++..+ .....|..++.++.+.+.-..=++|+.+..+..|.++.. ++.....-.
T Consensus 171 GyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk 250 (323)
T KOG0322|consen 171 GYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLK 250 (323)
T ss_pred eccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEec
Confidence 777999999999988433 333467889999999886666677888888999998632 222222223
Q ss_pred cCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEec
Q 009569 401 TLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (532)
Q Consensus 401 ~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~ 470 (532)
...|..+.+-||++.+++++.|++|++|..++.. ..+..|...|++++|+|+...+++++.|+.|.+|++
T Consensus 251 npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 251 NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 3378999999999999999999999999999988 677789999999999999999999999999999986
No 209
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=5.2e-15 Score=142.53 Aligned_cols=214 Identities=19% Similarity=0.228 Sum_probs=158.1
Q ss_pred EEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEee-ccCCceEEEEEee--CCCeEEEEeCCCcEEE
Q 009569 309 LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE-KTGVGLISCGWFL--DGGGIFAGMTDKSICL 385 (532)
Q Consensus 309 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i 385 (532)
....+.||++.|+++.|+.+|.+|++|+.|-.+.|||.-..+.++.+. +|.+.|.++.|-| +.+.+++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 336688999999999999999999999999999999998888777664 7899999999999 5678889999999999
Q ss_pred EECCC----------CeEEEeecCccCceEEEEEeeCC-CEEEEEECCCeEEEEECCCCce------------eeeecCC
Q 009569 386 WDLDG----------RELESWKGQKTLRISDMAITDDG-KRIISICREAAILLLDREANFE------------RWIEEEE 442 (532)
Q Consensus 386 wd~~~----------~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~I~iwd~~~~~~------------~~~~~~~ 442 (532)
+|+.. ........-|...|..++..|++ ..+.+++.||+|+-||++.... .+...--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99973 11112222344488889999988 7899999999999999987430 1111223
Q ss_pred ceeEEEEcCCC-CEEEEEecCCeEEEEecCCC-------C----------cceeEEe-ccc--------cceE-EEEEcc
Q 009569 443 VITSFSLSKDN-KYLLVNLINQEIHLWSIESD-------P----------KLVSRYK-GHK--------RARF-VIRSCF 494 (532)
Q Consensus 443 ~i~~~~~sp~~-~~l~~~~~dg~i~iwd~~~~-------~----------~~~~~~~-~~~--------~~~~-~i~~~~ 494 (532)
...|+.++|.. .+|++|+.|-..++||.+.. + .++..|. +|- .-+. ...+.|
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 46789999955 78899999999999994321 0 0122221 221 1111 233455
Q ss_pred CCCCCcEEEEEeCCCcEEEEeCCCCCcee
Q 009569 495 GGFEQAFIASGSEDSQVNIFLSFSPFAKK 523 (532)
Q Consensus 495 ~s~d~~~l~sgs~dg~i~iw~~~~~~~~~ 523 (532)
+|+|.-|+..-..-.||++|+..++...
T Consensus 282 -npNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 282 -NPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred -CCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 9998877766566689999999876443
No 210
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1.1e-13 Score=141.08 Aligned_cols=213 Identities=14% Similarity=0.154 Sum_probs=142.2
Q ss_pred ceeEEcccccccEEEEEEccCCCEEEEEeCC---CeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEE-EeeCC
Q 009569 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKD---QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLL-TCGQE 338 (532)
Q Consensus 263 ~~~~~l~~h~~~V~~v~~s~~g~~las~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~d 338 (532)
...+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.++.. .. +....+.+....|+|||+.|+ +.+.+
T Consensus 186 ~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-~~---l~~~~g~~~~~~~SPDG~~la~~~~~~ 261 (427)
T PRK02889 186 QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-RV---VANFKGSNSAPAWSPDGRTLAVALSRD 261 (427)
T ss_pred CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-EE---eecCCCCccceEECCCCCEEEEEEccC
Confidence 3334455678889999999999999887643 4599999986532 22 233344566899999999886 45667
Q ss_pred CcEEEE--ECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeC-CCcEEEE--ECCCCeEEEeecCccCceEEEEEeeCC
Q 009569 339 EAIRRW--DVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DKSICLW--DLDGRELESWKGQKTLRISDMAITDDG 413 (532)
Q Consensus 339 g~i~iw--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~s~~~ 413 (532)
+...|| |+.++. ...+..+........|+|||+.++..+. ++...+| ++.++......... ......+|+|||
T Consensus 262 g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g-~~~~~~~~SpDG 339 (427)
T PRK02889 262 GNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG-SYNTSPRISPDG 339 (427)
T ss_pred CCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC-CCcCceEECCCC
Confidence 765555 455444 4455545555667889999998886654 4555555 55555444433222 234567899999
Q ss_pred CEEEEEECCC---eEEEEECCCCceeeeecCCceeEEEEcCCCCEEEEEecCC---eEEEEecCCCCcceeEEecc
Q 009569 414 KRIISICREA---AILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQ---EIHLWSIESDPKLVSRYKGH 483 (532)
Q Consensus 414 ~~l~~~~~dg---~I~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~ 483 (532)
++|+..+.++ .|.+||+.++...............|+|||++|+..+.++ .+++.++. + .....+..+
T Consensus 340 ~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g-~~~~~l~~~ 413 (427)
T PRK02889 340 KLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G-RIKQRLSVQ 413 (427)
T ss_pred CEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEECC-C-CceEEeecC
Confidence 9998877654 6999999887733333333456789999999998877554 35566653 3 444455444
No 211
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=7.9e-14 Score=129.19 Aligned_cols=273 Identities=13% Similarity=0.217 Sum_probs=192.6
Q ss_pred cccCCCCCceeeccCCccCCCCCcceeEEcc-cccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCC
Q 009569 239 FHNTSDSDFSLYSDHQCGRNRIPSQTLQILE-AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317 (532)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (532)
.+++.+..+.+|.-........| ++++... .|...|.|++|....+++.+|..+++|...|+++...+ .+..-....
T Consensus 72 ~SGGDD~~~~~W~~de~~~~k~~-KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi-~V~~~~~~~ 149 (609)
T KOG4227|consen 72 ASGGDDMHGRVWNVDELMVRKTP-KPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSI-YVANENNNR 149 (609)
T ss_pred eecCCcceeeeechHHHHhhcCC-CCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceee-eeecccCcc
Confidence 35555667788876554443433 4555444 56699999999999999999999999999999976433 222222334
Q ss_pred CCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCc-EE--EEeeccCCceEEEEEeeC-CCeEEEEeCCCcEEEEECCCCeE
Q 009569 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE-CL--HVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGREL 393 (532)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~--~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~ 393 (532)
+.|+.+..+|..+.|++.+.++.|.+||.+... .+ ...........++.|+|. ..+|++.+..+-+-+||++....
T Consensus 150 ~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~ 229 (609)
T KOG4227|consen 150 GDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQAR 229 (609)
T ss_pred cceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccc
Confidence 589999999999999999999999999997654 22 222234556788899994 55677888888999999975322
Q ss_pred --EEeec-----CccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc-eee-eecC-------CceeEEEEcCCCCEEE
Q 009569 394 --ESWKG-----QKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERW-IEEE-------EVITSFSLSKDNKYLL 457 (532)
Q Consensus 394 --~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~-~~~-~~~~-------~~i~~~~~sp~~~~l~ 457 (532)
..... .....-.++.|+|+|+.+++.-....-.+||+-+.. ..+ ..|. ..+.+++|--|. .++
T Consensus 230 ~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~ 308 (609)
T KOG4227|consen 230 PVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVA 308 (609)
T ss_pred hHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eee
Confidence 11111 101133567899999999887777777788887755 222 2222 346778887554 489
Q ss_pred EEecCCeEEEEecCCC----------------------CcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEe
Q 009569 458 VNLINQEIHLWSIESD----------------------PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFL 515 (532)
Q Consensus 458 ~~~~dg~i~iwd~~~~----------------------~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~ 515 (532)
+|+.+-.|++|.+... ...+..++||..-+.. +.| +|...+|++.+-.+.++||.
T Consensus 309 tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ--VRF-~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 309 TGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ--VRF-SQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred ccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc--eee-cCCcceEeccchhhheeccc
Confidence 9999999999998532 0123456788776444 455 88889999999999999997
Q ss_pred CC
Q 009569 516 SF 517 (532)
Q Consensus 516 ~~ 517 (532)
..
T Consensus 386 ~~ 387 (609)
T KOG4227|consen 386 DH 387 (609)
T ss_pred cc
Confidence 54
No 212
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.61 E-value=4.5e-14 Score=127.94 Aligned_cols=202 Identities=12% Similarity=0.128 Sum_probs=164.5
Q ss_pred cCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCc---EEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEEC-CC
Q 009569 315 GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE---CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDL-DG 390 (532)
Q Consensus 315 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~-~~ 390 (532)
-...+|+|.+|++|...++.+..+..|.||.....+ ..+++..|...|+.++|+|..+.|++++.|..-++|.. .+
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 345789999999999999999999999999987654 67889999999999999999999999999999999998 44
Q ss_pred Ce---EEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc------eeeeecCCceeEEEEcCCCCEEEEEec
Q 009569 391 RE---LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF------ERWIEEEEVITSFSLSKDNKYLLVNLI 461 (532)
Q Consensus 391 ~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~------~~~~~~~~~i~~~~~sp~~~~l~~~~~ 461 (532)
+. ...+... ....+++.|+|.++.+++|+....|.||-++... .....+...|++++|+|++-+|++|+.
T Consensus 88 ~~WkptlvLlRi-NrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~ 166 (361)
T KOG1523|consen 88 GTWKPTLVLLRI-NRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST 166 (361)
T ss_pred CeeccceeEEEe-ccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence 32 2222223 3379999999999999999999999999987765 344567788999999999999999999
Q ss_pred CCeEEEEecC-----CC------------CcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCC
Q 009569 462 NQEIHLWSIE-----SD------------PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPF 520 (532)
Q Consensus 462 dg~i~iwd~~-----~~------------~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~ 520 (532)
|+..++|..- .. ++++..+. ....++-+..| +|.|..|+-.+.|+.+.+=|...+.
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~f-s~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLF-SPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEe-CCCCCEeeEecCCCceEEeecCCCc
Confidence 9999998642 11 12223332 33445566777 9999999999999999999988764
No 213
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=1.7e-13 Score=140.11 Aligned_cols=219 Identities=15% Similarity=0.128 Sum_probs=151.5
Q ss_pred CeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCC---CcEEEEECCCCcEEEEeeccCCceEEEEEeeC
Q 009569 294 QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE---EAIRRWDVNSGECLHVYEKTGVGLISCGWFLD 370 (532)
Q Consensus 294 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 370 (532)
..|.+||.... . ...+..+...+.+.+|+|||+.|+.++.+ ..|.+||+.+++.... ....+...+..|+||
T Consensus 184 ~~l~i~D~~g~-~---~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpD 258 (433)
T PRK04922 184 YALQVADSDGY-N---PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPD 258 (433)
T ss_pred EEEEEECCCCC-C---ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCC
Confidence 46888988633 2 23455677789999999999999988753 4699999988876433 333444567899999
Q ss_pred CCeEEE-EeCCC--cEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEEC-CC--eEEEEECCCCc-eeeeecCCc
Q 009569 371 GGGIFA-GMTDK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR-EA--AILLLDREANF-ERWIEEEEV 443 (532)
Q Consensus 371 ~~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~I~iwd~~~~~-~~~~~~~~~ 443 (532)
|+.++. .+.+| .|++||+.++.......... .....+|+|||+.|+.++. ++ .|+++|+.++. ..+......
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~-~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~ 337 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFG-IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNY 337 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCCeEECccCCC-CccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCC
Confidence 998764 45555 59999999887766554432 4567899999998887764 34 47778887766 333333444
Q ss_pred eeEEEEcCCCCEEEEEecCC---eEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCC---CcEEEEeCC
Q 009569 444 ITSFSLSKDNKYLLVNLINQ---EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED---SQVNIFLSF 517 (532)
Q Consensus 444 i~~~~~sp~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~d---g~i~iw~~~ 517 (532)
....+|+|||++|+..+.++ .|.+||+.++ +.. .+..... .....| +|||++|+..+.+ +.|+++++.
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g-~~~-~Lt~~~~---~~~p~~-spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG-SVR-TLTPGSL---DESPSF-APNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCCC-CeE-ECCCCCC---CCCceE-CCCCCEEEEEEecCCceEEEEEECC
Confidence 55789999999998765443 6999999776 333 3332111 122455 9999988877653 468888887
Q ss_pred CCCceee
Q 009569 518 SPFAKKI 524 (532)
Q Consensus 518 ~~~~~~~ 524 (532)
.+....+
T Consensus 412 g~~~~~l 418 (433)
T PRK04922 412 GRVRQRL 418 (433)
T ss_pred CCceEEc
Confidence 6554444
No 214
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.61 E-value=6.4e-14 Score=134.95 Aligned_cols=244 Identities=16% Similarity=0.211 Sum_probs=165.9
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeE--EE-EEeecCCCCeEEEEe-----CCCCCEEEEeeCCCcEEEEE
Q 009569 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVS--LK-HRLSGHRKPVFTVSW-----SPNDHQLLTCGQEEAIRRWD 345 (532)
Q Consensus 274 ~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~--~~-~~~~~h~~~v~~l~~-----s~~~~~l~s~~~dg~i~iwd 345 (532)
.+....++-.|++|+..- ...+++|+...+.... .. ..+.+. + ..|-+| .|++--++.|-..|.|.+.|
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt-~-P~cHdfn~~~a~~~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGT-S-PTCHDFNSFTATPKGLDLLIGFTTGQVQLID 201 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCC-C-CceecccccccCCCCcceEEeeccCceEEec
Confidence 344555555677776543 2468888887322111 11 112221 1 122233 34566788888889999988
Q ss_pred CCCCcEEEEee----ccCCceEEEEEeeC-CCeEEEEeCCCcEEEEECCC-----------------------------C
Q 009569 346 VNSGECLHVYE----KTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDG-----------------------------R 391 (532)
Q Consensus 346 ~~~~~~~~~~~----~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~-----------------------------~ 391 (532)
....+..+.+. .....++++.|-|. ...++++..+|.+++||..- .
T Consensus 202 p~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rN 281 (636)
T KOG2394|consen 202 PINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRN 281 (636)
T ss_pred chhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCC
Confidence 76533222121 12467999999994 45666778899999997631 0
Q ss_pred eEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEe
Q 009569 392 ELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (532)
Q Consensus 392 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd 469 (532)
.+..|.... +.|+.++|+|||++||+.+.||.++|||..+.+ -....--+...|++|||||+||++|++|.-|.||.
T Consensus 282 Pv~~w~~~~-g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 282 PVARWHIGE-GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWS 360 (636)
T ss_pred ccceeEecc-ccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEE
Confidence 111121122 278999999999999999999999999998877 23333456789999999999999999999999999
Q ss_pred cCCCCcceeEEeccccceEEEEEc--------------------------------cCCCCC-------------cEEEE
Q 009569 470 IESDPKLVSRYKGHKRARFVIRSC--------------------------------FGGFEQ-------------AFIAS 504 (532)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~--------------------------------~~s~d~-------------~~l~s 504 (532)
+... +.+..=++|...+..+.+. -++.++ -.+.+
T Consensus 361 f~er-RVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGS 439 (636)
T KOG2394|consen 361 FEER-RVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGS 439 (636)
T ss_pred eccc-eEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeec
Confidence 9988 8999989998876665443 001111 24678
Q ss_pred EeCCCcEEEEeCCCCCce
Q 009569 505 GSEDSQVNIFLSFSPFAK 522 (532)
Q Consensus 505 gs~dg~i~iw~~~~~~~~ 522 (532)
.+.|-.+.+||+....+.
T Consensus 440 VGqDTqlcLWDlteD~L~ 457 (636)
T KOG2394|consen 440 VGQDTQLCLWDLTEDVLV 457 (636)
T ss_pred ccccceEEEEecchhhcc
Confidence 889999999999876543
No 215
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.2e-13 Score=140.76 Aligned_cols=238 Identities=18% Similarity=0.266 Sum_probs=183.3
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCC---CEEEEeeCCCcEEEEECCCCcEE
Q 009569 276 WFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND---HQLLTCGQEEAIRRWDVNSGECL 352 (532)
Q Consensus 276 ~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~---~~l~s~~~dg~i~iwd~~~~~~~ 352 (532)
....||+|+++++.+. +..|.||...++. ++..+.+|..++..+.+.|.. .++++++.+|.|++||...+..+
T Consensus 20 ~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~---~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Ll 95 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCT-GNFVKVYSTATGE---CITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELL 95 (792)
T ss_pred cccccccCCcEEEEee-CCEEEEEecchHh---hhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEE
Confidence 3456999999888775 4589999999874 556889999999999998854 47889999999999998765433
Q ss_pred EEe-----------------------------------------------------------------------------
Q 009569 353 HVY----------------------------------------------------------------------------- 355 (532)
Q Consensus 353 ~~~----------------------------------------------------------------------------- 355 (532)
.++
T Consensus 96 kt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~ 175 (792)
T KOG1963|consen 96 KTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFK 175 (792)
T ss_pred EEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEE
Confidence 200
Q ss_pred --------------------------eccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCC-----CeEEEeecCccCce
Q 009569 356 --------------------------EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-----RELESWKGQKTLRI 404 (532)
Q Consensus 356 --------------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~v 404 (532)
..|...+++.+++|+++++++|..||.|.+|.--+ .....+..|+. .|
T Consensus 176 ~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~-~V 254 (792)
T KOG1963|consen 176 GIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHD-EV 254 (792)
T ss_pred EEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccc-cc
Confidence 01344467889999999999999999999996432 22334444444 89
Q ss_pred EEEEEeeCCCEEEEEECCCeEEEEECCCCceee-eecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEecc
Q 009569 405 SDMAITDDGKRIISICREAAILLLDREANFERW-IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483 (532)
Q Consensus 405 ~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~~~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 483 (532)
.+++|+++|.+|++|+..+.+.+|.+.++..++ ....++|..+.+|||+.+.++...|+.|.+....+. ....++.+.
T Consensus 255 ~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl-~~k~tIsgi 333 (792)
T KOG1963|consen 255 NSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL-EIKSTISGI 333 (792)
T ss_pred ceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccch-hhhhhccCc
Confidence 999999999999999999999999999988444 456789999999999999999999999999988665 333333332
Q ss_pred ccc---------eEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCC
Q 009569 484 KRA---------RFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPF 520 (532)
Q Consensus 484 ~~~---------~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~ 520 (532)
... .....+++ +|.-+.++-.+..|.|.+||+-+..
T Consensus 334 ~~~~~~~k~~~~~l~t~~~i-dpr~~~~vln~~~g~vQ~ydl~td~ 378 (792)
T KOG1963|consen 334 KPPTPSTKTRPQSLTTGVSI-DPRTNSLVLNGHPGHVQFYDLYTDS 378 (792)
T ss_pred cCCCccccccccccceeEEE-cCCCCceeecCCCceEEEEeccccc
Confidence 211 11122344 7766777888899999999998754
No 216
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.60 E-value=5.5e-15 Score=139.85 Aligned_cols=227 Identities=12% Similarity=0.166 Sum_probs=181.9
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEE
Q 009569 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH 353 (532)
Q Consensus 274 ~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 353 (532)
.-..+.++.+|++|+.|+.-|.|..+|+.+. .....+. -...|.++.|-.+.+++|+ .....++|||- .|..++
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~---~L~~Ei~-v~Etv~Dv~~LHneq~~AV-AQK~y~yvYD~-~GtElH 204 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTK---KLHFEIN-VMETVRDVTFLHNEQFFAV-AQKKYVYVYDN-NGTELH 204 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccc---eeeeeee-hhhhhhhhhhhcchHHHHh-hhhceEEEecC-CCcEEe
Confidence 3457889999999999999999999999865 2333332 3456889999888877776 45678999994 577777
Q ss_pred EeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCC
Q 009569 354 VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN 433 (532)
Q Consensus 354 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~ 433 (532)
.++.+. .|..+.|.|.--+|++++..|.+..-|+..+.+........+.+..++-+|-+..+-+|...|+|.+|.....
T Consensus 205 Clk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 205 CLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred ehhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 777554 5889999999888999999999999999988776666556668999999999999999999999999999888
Q ss_pred c--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEec-cccceEEEEEccCCCCCcEEEEEeCCCc
Q 009569 434 F--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG-HKRARFVIRSCFGGFEQAFIASGSEDSQ 510 (532)
Q Consensus 434 ~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~i~~~~~s~d~~~l~sgs~dg~ 510 (532)
. ..+..|.++|.++++.++|+|+++.+.|..++|||+++. ..+.++.. |.. -.+.+ |..| +++.|....
T Consensus 284 ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~-~ql~t~~tp~~a----~~ls~-Sqkg--lLA~~~G~~ 355 (545)
T KOG1272|consen 284 EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF-YQLHTYRTPHPA----SNLSL-SQKG--LLALSYGDH 355 (545)
T ss_pred chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccc-cccceeecCCCc----ccccc-cccc--ceeeecCCe
Confidence 7 778899999999999999999999999999999999998 44455444 222 22444 5444 444556667
Q ss_pred EEEEe
Q 009569 511 VNIFL 515 (532)
Q Consensus 511 i~iw~ 515 (532)
|.||.
T Consensus 356 v~iw~ 360 (545)
T KOG1272|consen 356 VQIWK 360 (545)
T ss_pred eeeeh
Confidence 99995
No 217
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=1.1e-12 Score=119.04 Aligned_cols=237 Identities=11% Similarity=0.124 Sum_probs=163.2
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEE-eeCC------CcEEEEEC
Q 009569 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLT-CGQE------EAIRRWDV 346 (532)
Q Consensus 274 ~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~d------g~i~iwd~ 346 (532)
...+++|+.|...++.|..+| .+||+++- ++.......+...+.-+..---.++|+- |+.+ ..|.|||=
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P---~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDP---FKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCc---hhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence 345599999999999887666 69999863 1111111112222211111112334443 3332 37999997
Q ss_pred CCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCC--CeEEEeecCc-cCceEEEEEeeCCCEEEEEE-CC
Q 009569 347 NSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG--RELESWKGQK-TLRISDMAITDDGKRIISIC-RE 422 (532)
Q Consensus 347 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~-~d 422 (532)
....++..+. -..+|.++.+.++ .+++.. .+.|++|.... +.+..+.... .....+++-+.+...|+.-+ .-
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence 6777777775 4667999999755 555544 57899999874 2233333222 11344443333444555533 56
Q ss_pred CeEEEEECCCCc----eeeeecCCceeEEEEcCCCCEEEEEecCCe-EEEEecCCCCcceeEEeccccceEEEEEccCCC
Q 009569 423 AAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQE-IHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF 497 (532)
Q Consensus 423 g~I~iwd~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 497 (532)
|.|.|-|+.... .....|...|.|++++-+|..+|+++..|+ |+|||..++ .++..++.......+....| +|
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g-~~l~E~RRG~d~A~iy~iaF-Sp 236 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG-TLLQELRRGVDRADIYCIAF-SP 236 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC-cEeeeeecCCchheEEEEEe-CC
Confidence 999999997765 456789999999999999999999999997 899999999 88888876666555666777 99
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCC
Q 009569 498 EQAFIASGSEDSQVNIFLSFSPF 520 (532)
Q Consensus 498 d~~~l~sgs~dg~i~iw~~~~~~ 520 (532)
++.+|+++|+.|+|+||.+....
T Consensus 237 ~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 237 NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred CccEEEEEcCCCeEEEEEeecCC
Confidence 99999999999999999998743
No 218
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.59 E-value=4.6e-13 Score=136.14 Aligned_cols=225 Identities=15% Similarity=0.200 Sum_probs=161.2
Q ss_pred CCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCC-CCCEEEEeeCCCcEEEEECCCCcE--EE----EeeccCCceEEE
Q 009569 293 DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNSGEC--LH----VYEKTGVGLISC 365 (532)
Q Consensus 293 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~--~~----~~~~~~~~i~~~ 365 (532)
++.+.+|++..... +...+ .-...|.++.|+| +..+++.|+.+|.|.+||++.+.. .. ....|..+++.+
T Consensus 221 ~~~~~vW~~~~p~~--Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNT--PELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV 297 (555)
T ss_pred CceEEEEecCCCCC--ceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence 35799999986533 22333 3567899999999 567888888999999999987654 22 223578899999
Q ss_pred EEeeCCC--eEEEEeCCCcEEEEECCCCeE------EEee------cCccCceEEEEEee-CCCEEEEEECCCeEEEEEC
Q 009569 366 GWFLDGG--GIFAGMTDKSICLWDLDGREL------ESWK------GQKTLRISDMAITD-DGKRIISICREAAILLLDR 430 (532)
Q Consensus 366 ~~~~~~~--~l~~~~~dg~i~iwd~~~~~~------~~~~------~~~~~~v~~~~~s~-~~~~l~~~~~dg~I~iwd~ 430 (532)
.|..+.. -|++++.||.|+.|+++.-.. .... ......+++++|.+ +...+++|+.+|.|..-+.
T Consensus 298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r 377 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCR 377 (555)
T ss_pred EEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEec
Confidence 9987544 499999999999999874111 1111 12233789999988 4567899999999988554
Q ss_pred CCCc----------eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCC-C
Q 009569 431 EANF----------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE-Q 499 (532)
Q Consensus 431 ~~~~----------~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d-~ 499 (532)
.... .....|.++|.++.++|=+..++..+.|.+++||.......++..+..+...++ .+.| ||. .
T Consensus 378 ~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~--~vaW-Sptrp 454 (555)
T KOG1587|consen 378 KGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVT--DVAW-SPTRP 454 (555)
T ss_pred cCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceee--eeEE-cCcCc
Confidence 4333 244568899999999997755555444999999998733367777776666543 4555 554 3
Q ss_pred cEEEEEeCCCcEEEEeCCCCCcee
Q 009569 500 AFIASGSEDSQVNIFLSFSPFAKK 523 (532)
Q Consensus 500 ~~l~sgs~dg~i~iw~~~~~~~~~ 523 (532)
..++++..||.|.|||+.......
T Consensus 455 avF~~~d~~G~l~iWDLl~~~~~P 478 (555)
T KOG1587|consen 455 AVFATVDGDGNLDIWDLLQDDEEP 478 (555)
T ss_pred eEEEEEcCCCceehhhhhccccCC
Confidence 678888899999999997654433
No 219
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.59 E-value=1.4e-15 Score=152.98 Aligned_cols=210 Identities=15% Similarity=0.254 Sum_probs=164.7
Q ss_pred EEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECC
Q 009569 310 KHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD 389 (532)
Q Consensus 310 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 389 (532)
+..+.+|.++|+|+.|...|.++++|+.|..++||.++++.++....+|.+.|+.++.+.++.++++++.|..|++|.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCceeee------ec-----------------------
Q 009569 390 GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWI------EE----------------------- 440 (532)
Q Consensus 390 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~~~~~------~~----------------------- 440 (532)
.+.......+|++.|++++|+|-. +.+.||++++||.+-....+. ..
T Consensus 263 ~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ 338 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG 338 (1113)
T ss_pred CCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence 988888888888899999999964 678999999999881110000 00
Q ss_pred ---CCceeEEEEcCCC-----------CEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEe
Q 009569 441 ---EEVITSFSLSKDN-----------KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGS 506 (532)
Q Consensus 441 ---~~~i~~~~~sp~~-----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs 506 (532)
...+..++|.... .+.++.-.+-.+.+|++.++ .+.+...+|...++++.+..+ +.....+++
T Consensus 339 ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~ghsd~~yvLd~Hpf--n~ri~msag 415 (1113)
T KOG0644|consen 339 EARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHNLMGHSDEVYVLDVHPF--NPRIAMSAG 415 (1113)
T ss_pred ccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc-hhhhhhcccccceeeeeecCC--CcHhhhhcc
Confidence 0111122222222 23333444556888999888 888899999999888776433 335567899
Q ss_pred CCCcEEEEeCCCCCceeeec
Q 009569 507 EDSQVNIFLSFSPFAKKIKY 526 (532)
Q Consensus 507 ~dg~i~iw~~~~~~~~~~~~ 526 (532)
.||+..|||+-.|...+..+
T Consensus 416 ~dgst~iwdi~eg~pik~y~ 435 (1113)
T KOG0644|consen 416 YDGSTIIWDIWEGIPIKHYF 435 (1113)
T ss_pred CCCceEeeecccCCcceeee
Confidence 99999999998876544433
No 220
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.58 E-value=4.8e-13 Score=122.37 Aligned_cols=250 Identities=17% Similarity=0.301 Sum_probs=179.3
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEEeecCC--eeEEEEEeecCC------------CCeEEEEeCCCC--CEEEEe
Q 009569 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG--QVSLKHRLSGHR------------KPVFTVSWSPND--HQLLTC 335 (532)
Q Consensus 272 ~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~h~------------~~v~~l~~s~~~--~~l~s~ 335 (532)
.+-|.++.|...|.+||||..+|.|.++.-.... .+.....++.|. ..|..+.|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568899999999999999999999999765321 233455555564 357889999865 466777
Q ss_pred eCCCcEEEEECCCCcE-----------------------------------EEEe-eccCCceEEEEEeeCCCeEEEEeC
Q 009569 336 GQEEAIRRWDVNSGEC-----------------------------------LHVY-EKTGVGLISCGWFLDGGGIFAGMT 379 (532)
Q Consensus 336 ~~dg~i~iwd~~~~~~-----------------------------------~~~~-~~~~~~i~~~~~~~~~~~l~~~~~ 379 (532)
+.|.+|++|-+..... .+.+ ..|...|.++.++.|+..++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 8899999998853210 0111 24677789999999988888764
Q ss_pred CCcEEEEECCC----CeEEEeecCcc----CceEEEEEeeC-CCEEEEEECCCeEEEEECCCCc-----eeee-------
Q 009569 380 DKSICLWDLDG----RELESWKGQKT----LRISDMAITDD-GKRIISICREAAILLLDREANF-----ERWI------- 438 (532)
Q Consensus 380 dg~i~iwd~~~----~~~~~~~~~~~----~~v~~~~~s~~-~~~l~~~~~dg~I~iwd~~~~~-----~~~~------- 438 (532)
|=.|-+|+++- -.+....+... .-|++..|+|. .+.++-.+..|+|++.|++... ..+.
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 67899999862 23333433321 25788899995 4677888899999999998532 1111
Q ss_pred ------ecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEecccc------------ceE-EEEEccCCCCC
Q 009569 439 ------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR------------ARF-VIRSCFGGFEQ 499 (532)
Q Consensus 439 ------~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------------~~~-~i~~~~~s~d~ 499 (532)
.--..|..+.|+++|+|+++-+ --+|++||+....+++.+++.|.. .++ -..++| +-++
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~-sg~~ 341 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSW-SGND 341 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEE-cCCc
Confidence 1124578899999999999865 368999999666588888887742 111 134666 7788
Q ss_pred cEEEEEeCCCcEEEEeCCCCCceee
Q 009569 500 AFIASGSEDSQVNIFLSFSPFAKKI 524 (532)
Q Consensus 500 ~~l~sgs~dg~i~iw~~~~~~~~~~ 524 (532)
.+++||+..+.+++++...|.....
T Consensus 342 ~~v~TGsy~n~frvf~~~~gsk~d~ 366 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARGSKEDF 366 (433)
T ss_pred ceEecccccceEEEecCCCCcceee
Confidence 8999999999999999766654433
No 221
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=4e-13 Score=120.80 Aligned_cols=154 Identities=16% Similarity=0.267 Sum_probs=111.6
Q ss_pred EEEEeCCCCCEEEEeeC---C-------CcEEEEECCC-CcEEEEeec-cCCceEEEEEeeCCCeEEEE--eCCCcEEEE
Q 009569 321 FTVSWSPNDHQLLTCGQ---E-------EAIRRWDVNS-GECLHVYEK-TGVGLISCGWFLDGGGIFAG--MTDKSICLW 386 (532)
Q Consensus 321 ~~l~~s~~~~~l~s~~~---d-------g~i~iwd~~~-~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~--~~dg~i~iw 386 (532)
..+.|+|+|++|+.-.. | +...+|.++. +..+..+.. ..++|.+++|+|+|+.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999987765443 1 2345555522 233444443 34579999999999997654 456799999
Q ss_pred ECCCCeEEEeecCccCceEEEEEeeCCCEEEEEEC---CCeEEEEECCCCceeeeecCCceeEEEEcCCCCEEEEEec--
Q 009569 387 DLDGRELESWKGQKTLRISDMAITDDGKRIISICR---EAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLI-- 461 (532)
Q Consensus 387 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~I~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-- 461 (532)
|++...+..+.. ..+..+.|+|+|+++++++. .|.|.+||.++.+.........++.++|+|||++++++..
T Consensus 89 d~~~~~i~~~~~---~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~ 165 (194)
T PF08662_consen 89 DVKGKKIFSFGT---QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATTSP 165 (194)
T ss_pred cCcccEeEeecC---CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEecc
Confidence 998766665532 36889999999999999874 3679999999877433334445889999999999999874
Q ss_pred ----CCeEEEEecCCCCcceeE
Q 009569 462 ----NQEIHLWSIESDPKLVSR 479 (532)
Q Consensus 462 ----dg~i~iwd~~~~~~~~~~ 479 (532)
|+.++||+... +.+..
T Consensus 166 r~~~dng~~Iw~~~G--~~l~~ 185 (194)
T PF08662_consen 166 RLRVDNGFKIWSFQG--RLLYK 185 (194)
T ss_pred ceeccccEEEEEecC--eEeEe
Confidence 67899999864 34443
No 222
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.7e-12 Score=132.27 Aligned_cols=214 Identities=14% Similarity=0.135 Sum_probs=140.1
Q ss_pred CeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCC---CcEEEEECCCCcEEEEeeccCCceEEEEEeeC
Q 009569 294 QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE---EAIRRWDVNSGECLHVYEKTGVGLISCGWFLD 370 (532)
Q Consensus 294 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 370 (532)
..|.+||.. +. ....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+...+..|+||
T Consensus 176 ~~L~~~D~d-G~---~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPD 250 (427)
T PRK02889 176 YQLQISDAD-GQ---NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPD 250 (427)
T ss_pred cEEEEECCC-CC---CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCC
Confidence 356666664 22 223345677889999999999999887753 359999999887643 3333445678899999
Q ss_pred CCeEEE-EeCCCcEEEE--ECCCCeEEEeecCccCceEEEEEeeCCCEEEEEEC-CCeEEEE--ECCCCc-eeeeecCCc
Q 009569 371 GGGIFA-GMTDKSICLW--DLDGRELESWKGQKTLRISDMAITDDGKRIISICR-EAAILLL--DREANF-ERWIEEEEV 443 (532)
Q Consensus 371 ~~~l~~-~~~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~I~iw--d~~~~~-~~~~~~~~~ 443 (532)
|+.++. .+.+|...+| |+.++....+..+. .......|+|||+.|+..+. ++...+| +..++. .........
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~ 329 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSGLRRLTQSS-GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSY 329 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCcEECCCCC-CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCC
Confidence 998875 5667765554 56666655554433 34567889999998887664 3454555 555544 233323334
Q ss_pred eeEEEEcCCCCEEEEEecCC---eEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCC---cEEEEeCC
Q 009569 444 ITSFSLSKDNKYLLVNLINQ---EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS---QVNIFLSF 517 (532)
Q Consensus 444 i~~~~~sp~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg---~i~iw~~~ 517 (532)
....+|||||++|+..+.++ .|++||+.++ +. ..+...... ....| +|||+.|+.++.++ .+++.++.
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g-~~-~~lt~~~~~---~~p~~-spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATG-QV-TALTDTTRD---ESPSF-APNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCCC-Ce-EEccCCCCc---cCceE-CCCCCEEEEEEecCCCEEEEEEECC
Confidence 45689999999998776554 6999999876 33 233322111 22455 99999988877544 36666664
Q ss_pred CC
Q 009569 518 SP 519 (532)
Q Consensus 518 ~~ 519 (532)
..
T Consensus 404 g~ 405 (427)
T PRK02889 404 GR 405 (427)
T ss_pred CC
Confidence 43
No 223
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=3.5e-13 Score=125.40 Aligned_cols=243 Identities=19% Similarity=0.223 Sum_probs=177.0
Q ss_pred ccccEEEEEEccCCC--EEEEEeCCCeEEEEEeecCCeeEE---EEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEE
Q 009569 271 HSDEVWFLQFSHDGK--YLASSSKDQSAIIWEVKEDGQVSL---KHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (532)
Q Consensus 271 h~~~V~~v~~s~~g~--~las~s~dg~i~iwd~~~~~~~~~---~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 345 (532)
....|..++|..+++ .+..++.|..+..+.+...+.... ........++|..+... ...|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 445778888887654 455555677777777664432111 12334456667766654 34788889999999999
Q ss_pred CCCCc----EEEEeeccCCceEEEEEeeCCCeE-EEEeCC--CcEEEEECCCCeEEEeecC--c--------cCceEEEE
Q 009569 346 VNSGE----CLHVYEKTGVGLISCGWFLDGGGI-FAGMTD--KSICLWDLDGRELESWKGQ--K--------TLRISDMA 408 (532)
Q Consensus 346 ~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d--g~i~iwd~~~~~~~~~~~~--~--------~~~v~~~~ 408 (532)
.+.+. .+..+.. ..++..+.-++....| ++|+.. ..+.+||+++. ...|... . .-+++++.
T Consensus 132 ~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred ccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccc-eeeeeccCCCCccccceeeeeeccce
Confidence 98543 2233333 3446666666655555 458887 78999999875 2222221 1 11578889
Q ss_pred EeeC--CCEEEEEECCCeEEEEECCCCc---eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEecc
Q 009569 409 ITDD--GKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483 (532)
Q Consensus 409 ~s~~--~~~l~~~~~dg~I~iwd~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 483 (532)
|.+. ...|++++.-+.+++||.+.++ ..+.....+++++...|+++++++|..-|.+..||++.+......+.+.
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~ 289 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI 289 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc
Confidence 9887 7899999999999999999877 4455567899999999999999999999999999999984444458888
Q ss_pred ccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCC
Q 009569 484 KRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPF 520 (532)
Q Consensus 484 ~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~ 520 (532)
.+.+..+.+ +|.+.+++++|-|..|+|+|+++..
T Consensus 290 tGsirsih~---hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 290 TGSIRSIHC---HPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred cCCcceEEE---cCCCceEEeeccceeEEEeecccch
Confidence 887666655 8889999999999999999999843
No 224
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.57 E-value=2.1e-14 Score=130.28 Aligned_cols=219 Identities=20% Similarity=0.291 Sum_probs=151.2
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEe-eCCCcEEEEECCCCcEEEEe
Q 009569 277 FLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC-GQEEAIRRWDVNSGECLHVY 355 (532)
Q Consensus 277 ~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~ 355 (532)
-++|||+|+|+|+++.- .+.|-|..+- ...+.+. .-..|..+.|..|..+++.+ ..++.|.+|++...+-...+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tl---q~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI 87 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETL---QLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI 87 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchh---hHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe
Confidence 46899999999999765 6777776542 1111111 13457789999888776665 45789999999998888889
Q ss_pred eccCCceEEEEEeeCCCeEEE-EeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc
Q 009569 356 EKTGVGLISCGWFLDGGGIFA-GMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF 434 (532)
Q Consensus 356 ~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~ 434 (532)
....+++.+++|+|||+.++. ...+-.|.+|.+.+.........+. .+..++|+|||++.+.++.-...-.+.+...+
T Consensus 88 deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~-~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~ 166 (447)
T KOG4497|consen 88 DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKT-NVKGYAFHPDGQFCAILSRRDCKDYVQISSCK 166 (447)
T ss_pred ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccccc-CceeEEECCCCceeeeeecccHHHHHHHHhhH
Confidence 888999999999999977665 5568899999999877655554444 67999999999999888754222222222111
Q ss_pred -----eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCC
Q 009569 435 -----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS 509 (532)
Q Consensus 435 -----~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg 509 (532)
..+.-..-..+.+.|+|||..|++ ||---. -.+..+ +.+ .-+....| +|.+++|+.|+.|+
T Consensus 167 ~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Le-ykv~aY--e~~-lG~k~v~w-sP~~qflavGsyD~ 232 (447)
T KOG4497|consen 167 AWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLE-YKVYAY--ERG-LGLKFVEW-SPCNQFLAVGSYDQ 232 (447)
T ss_pred HHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhh-heeeee--eec-cceeEEEe-ccccceEEeeccch
Confidence 222234456788999999988765 442211 111111 111 11223445 99999999999999
Q ss_pred cEEEEe
Q 009569 510 QVNIFL 515 (532)
Q Consensus 510 ~i~iw~ 515 (532)
.++|-+
T Consensus 233 ~lrvln 238 (447)
T KOG4497|consen 233 MLRVLN 238 (447)
T ss_pred hhhhhc
Confidence 998754
No 225
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.56 E-value=6.2e-13 Score=139.55 Aligned_cols=220 Identities=12% Similarity=0.155 Sum_probs=162.8
Q ss_pred EEEEEeecCCCCeEEEEeCCCC-CEEEEeeCCCcEEEEECCCC-------cEEEEeeccCCceEEEEEeeCCCeEEEEeC
Q 009569 308 SLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSG-------ECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379 (532)
Q Consensus 308 ~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 379 (532)
..+..+..|...|..++.++.. .++++||.||+|++|+.+.- ++..++......+.++...+.+..+++++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 4567778899999898888765 89999999999999998532 233445445678889999999999999999
Q ss_pred CCcEEEEECCCCeE--------EEeecCccCceEE-EEEee-CCC-EEEEEECCCeEEEEECCCCc----eeeeecCCce
Q 009569 380 DKSICLWDLDGREL--------ESWKGQKTLRISD-MAITD-DGK-RIISICREAAILLLDREANF----ERWIEEEEVI 444 (532)
Q Consensus 380 dg~i~iwd~~~~~~--------~~~~~~~~~~v~~-~~~s~-~~~-~l~~~~~dg~I~iwd~~~~~----~~~~~~~~~i 444 (532)
||.|.+.+++-... +.......+.+.+ -+|.. ++. .++.+...+.|..||++... .......+.|
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 99999999864111 1111122223333 34433 233 67888889999999999876 3334456789
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEe-ccccceEEEEEccCCCCCcEEEEEeC--CCcEEEEeCCCCCc
Q 009569 445 TSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK-GHKRARFVIRSCFGGFEQAFIASGSE--DSQVNIFLSFSPFA 521 (532)
Q Consensus 445 ~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~sgs~--dg~i~iw~~~~~~~ 521 (532)
++++.+|.+.++++|+..|.+.+||++-+ .++..+. ++..++.-+.+++..+.....++++. .+.|.+|++.+|..
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~-~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFR-VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecC-ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 99999999999999999999999999987 6776654 33344555667776676666666654 67799999999987
Q ss_pred eeeeccc
Q 009569 522 KKIKYTS 528 (532)
Q Consensus 522 ~~~~~~~ 528 (532)
+...+.+
T Consensus 1278 ~~vl~~s 1284 (1431)
T KOG1240|consen 1278 QTVLWAS 1284 (1431)
T ss_pred eEEEEcC
Confidence 7766654
No 226
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.56 E-value=6.5e-12 Score=124.24 Aligned_cols=269 Identities=12% Similarity=0.101 Sum_probs=168.9
Q ss_pred cCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCe
Q 009569 241 NTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPV 320 (532)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 320 (532)
...++.+.+.+..+ .+.+..+......-..+.|+|||+++++++.||.|.++|+.+.. .+.++... ...
T Consensus 12 ~~~~~~v~viD~~t-------~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~---~v~~i~~G-~~~ 80 (369)
T PF02239_consen 12 ERGSGSVAVIDGAT-------NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK---VVATIKVG-GNP 80 (369)
T ss_dssp EGGGTEEEEEETTT--------SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS---EEEEEE-S-SEE
T ss_pred ecCCCEEEEEECCC-------CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc---EEEEEecC-CCc
Confidence 34445666665433 46677777554444557899999999999999999999999774 44444433 346
Q ss_pred EEEEeCCCCCEEEEee-CCCcEEEEECCCCcEEEEeecc-------CCceEEEEEeeCCCeEEEEeCC-CcEEEEECCCC
Q 009569 321 FTVSWSPNDHQLLTCG-QEEAIRRWDVNSGECLHVYEKT-------GVGLISCGWFLDGGGIFAGMTD-KSICLWDLDGR 391 (532)
Q Consensus 321 ~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~ 391 (532)
.++++|+||+++++++ ..+.+.++|.++.+.+..+... ...+.++..+|....+++.-.| +.|.+.|....
T Consensus 81 ~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 81 RGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred ceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 7899999999998776 4789999999999998877643 3457788888888866666554 78888887642
Q ss_pred -eEEEeecCccCceEEEEEeeCCCEEEEE-ECCCeEEEEECCCCc-eeee--------------e---------------
Q 009569 392 -ELESWKGQKTLRISDMAITDDGKRIISI-CREAAILLLDREANF-ERWI--------------E--------------- 439 (532)
Q Consensus 392 -~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~I~iwd~~~~~-~~~~--------------~--------------- 439 (532)
.+............+..|+|++++++++ ..++.|.++|..+.. .... .
T Consensus 161 ~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~ 240 (369)
T PF02239_consen 161 KNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGY 240 (369)
T ss_dssp SCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSS
T ss_pred cccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccc
Confidence 2221111122268889999999987665 456678888877654 1100 0
Q ss_pred --------------------------cCCceeEEEEcCCCCEEEEE----ecCCeEEEEecCCCCcceeEEeccccceEE
Q 009569 440 --------------------------EEEVITSFSLSKDNKYLLVN----LINQEIHLWSIESDPKLVSRYKGHKRARFV 489 (532)
Q Consensus 440 --------------------------~~~~i~~~~~sp~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 489 (532)
..+.-.-+..+|+++++++. ...+.|.++|..+. +.+.++..... ...
T Consensus 241 ~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl-~~~~~i~~~~~-~~~ 318 (369)
T PF02239_consen 241 FAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL-KVVKTITPGPG-KRV 318 (369)
T ss_dssp SEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGT-EEEE-HHHHHT---E
T ss_pred eecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCc-ceeEEEeccCC-CcE
Confidence 01111346779999999998 44578999999987 66666653333 124
Q ss_pred EEEccCCCCCcEEEEEeCC--CcEEEEeCCCCCcee
Q 009569 490 IRSCFGGFEQAFIASGSED--SQVNIFLSFSPFAKK 523 (532)
Q Consensus 490 i~~~~~s~d~~~l~sgs~d--g~i~iw~~~~~~~~~ 523 (532)
+...| +++|+.+..+..+ |.|.+||..+.+...
T Consensus 319 ~h~ef-~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 319 VHMEF-NPDGKEVWVSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp EEEEE--TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred eccEE-CCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence 66777 9999987665544 369999999976543
No 227
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.56 E-value=3.3e-13 Score=121.28 Aligned_cols=157 Identities=17% Similarity=0.267 Sum_probs=112.0
Q ss_pred EEEEEeeCCCeEEEEeC---C-------C--cEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEE--CCCeEEEE
Q 009569 363 ISCGWFLDGGGIFAGMT---D-------K--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC--REAAILLL 428 (532)
Q Consensus 363 ~~~~~~~~~~~l~~~~~---d-------g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~I~iw 428 (532)
..+.|+|+|++|++-.. | + .+..++..+.....+.....++|.+++|+|+|+.+++.. .+..|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45788898888776432 1 2 244444455555555444445799999999999876653 56799999
Q ss_pred ECCCCceeeeecCCceeEEEEcCCCCEEEEEec---CCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEE
Q 009569 429 DREANFERWIEEEEVITSFSLSKDNKYLLVNLI---NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG 505 (532)
Q Consensus 429 d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sg 505 (532)
|++.... ..-....++.+.|+|+|++|++++. .|.|.+||+++. +.+.++... . +..+.| +|||++++++
T Consensus 89 d~~~~~i-~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~-~~i~~~~~~-~---~t~~~W-sPdGr~~~ta 161 (194)
T PF08662_consen 89 DVKGKKI-FSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK-KKISTFEHS-D---ATDVEW-SPDGRYLATA 161 (194)
T ss_pred cCcccEe-EeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC-EEeeccccC-c---EEEEEE-cCCCCEEEEE
Confidence 9974432 2334567889999999999999874 467999999977 676665433 2 345667 9999999998
Q ss_pred eC------CCcEEEEeCCCCCceeeec
Q 009569 506 SE------DSQVNIFLSFSPFAKKIKY 526 (532)
Q Consensus 506 s~------dg~i~iw~~~~~~~~~~~~ 526 (532)
+. |+.++||+.......+..+
T Consensus 162 ~t~~r~~~dng~~Iw~~~G~~l~~~~~ 188 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQGRLLYKKPF 188 (194)
T ss_pred EeccceeccccEEEEEecCeEeEecch
Confidence 74 7899999997655444433
No 228
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.56 E-value=4.6e-14 Score=135.91 Aligned_cols=140 Identities=18% Similarity=0.270 Sum_probs=114.4
Q ss_pred cccEEEEEEccCC-CEEEEEeCCCeEEEEEeec--------------CCeeE-----------EEEEeecCCCCeEEEEe
Q 009569 272 SDEVWFLQFSHDG-KYLASSSKDQSAIIWEVKE--------------DGQVS-----------LKHRLSGHRKPVFTVSW 325 (532)
Q Consensus 272 ~~~V~~v~~s~~g-~~las~s~dg~i~iwd~~~--------------~~~~~-----------~~~~~~~h~~~v~~l~~ 325 (532)
+..|+|+.|-|.+ ..++.+-.+|.+++||..- +..+. ++..+.--.+.|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 3789999999944 4555666889999997641 11111 11112223457889999
Q ss_pred CCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceE
Q 009569 326 SPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRIS 405 (532)
Q Consensus 326 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 405 (532)
+|||++||+.+.||.++|+|..+.+.+..++..-+...|++|+|||++|++|+.|.-|.||.+..+.+...-..|..+|+
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs 378 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVS 378 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccccee
Confidence 99999999999999999999999998888888888899999999999999999999999999999888888777878999
Q ss_pred EEEEee
Q 009569 406 DMAITD 411 (532)
Q Consensus 406 ~~~~s~ 411 (532)
.++|+|
T Consensus 379 ~VaFDp 384 (636)
T KOG2394|consen 379 VVAFDP 384 (636)
T ss_pred eEeecc
Confidence 999984
No 229
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.54 E-value=3.9e-12 Score=130.06 Aligned_cols=218 Identities=16% Similarity=0.178 Sum_probs=150.2
Q ss_pred CCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCC---CcEEEEECCCCcEEEEeeccCCceEEEEEee
Q 009569 293 DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE---EAIRRWDVNSGECLHVYEKTGVGLISCGWFL 369 (532)
Q Consensus 293 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~ 369 (532)
...|.++|.... . ...+..+...+...+|+|||++|+.++.+ ..|++||+.+++.... ..+...+.+++|+|
T Consensus 169 ~~~l~~~d~~g~-~---~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~sp 243 (417)
T TIGR02800 169 RYELQVADYDGA-N---PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSP 243 (417)
T ss_pred cceEEEEcCCCC-C---CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECC
Confidence 345777776532 2 23444566778899999999999887754 4799999998865433 33445567789999
Q ss_pred CCCeEEEE-eCCC--cEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECC-C--eEEEEECCCCc-eeeeecCC
Q 009569 370 DGGGIFAG-MTDK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE-A--AILLLDREANF-ERWIEEEE 442 (532)
Q Consensus 370 ~~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~I~iwd~~~~~-~~~~~~~~ 442 (532)
|++.|+.. +.++ .|++||+.++......... .......|+|||+.|+.++.. + .|+++|+.++. ..+..+..
T Consensus 244 Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~ 322 (417)
T TIGR02800 244 DGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP-GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGG 322 (417)
T ss_pred CCCEEEEEECCCCCccEEEEECCCCCEEECCCCC-CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC
Confidence 99987654 4343 5999999887666555443 245577899999988876643 2 68888988776 44444556
Q ss_pred ceeEEEEcCCCCEEEEEecCC---eEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCC---cEEEEeC
Q 009569 443 VITSFSLSKDNKYLLVNLINQ---EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS---QVNIFLS 516 (532)
Q Consensus 443 ~i~~~~~sp~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg---~i~iw~~ 516 (532)
.+..+.|+|++++++.++.++ .|.+||+.++ . ...+...... ....| +||+++|+..+.++ .+++.+.
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~-~-~~~l~~~~~~---~~p~~-spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG-G-ERVLTDTGLD---ESPSF-APNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCC-C-eEEccCCCCC---CCceE-CCCCCEEEEEEeCCCcEEEEEEEC
Confidence 677899999999999888776 7899998775 2 2333322111 22345 89999888877654 4666666
Q ss_pred CCCCce
Q 009569 517 FSPFAK 522 (532)
Q Consensus 517 ~~~~~~ 522 (532)
......
T Consensus 397 ~g~~~~ 402 (417)
T TIGR02800 397 DGRFRA 402 (417)
T ss_pred CCceee
Confidence 554433
No 230
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=4.9e-13 Score=129.91 Aligned_cols=241 Identities=15% Similarity=0.207 Sum_probs=172.1
Q ss_pred ccccEEEEEEccCCCEE-EEEeCCCeEEEEEeecCCeeEEE--------------------------EEeecCC------
Q 009569 271 HSDEVWFLQFSHDGKYL-ASSSKDQSAIIWEVKEDGQVSLK--------------------------HRLSGHR------ 317 (532)
Q Consensus 271 h~~~V~~v~~s~~g~~l-as~s~dg~i~iwd~~~~~~~~~~--------------------------~~~~~h~------ 317 (532)
|...-+.|..+|||+|+ |||.+--.|++||+..- .++.- ..+.-|.
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL-SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL-SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccc-eeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 56667789999999986 57778889999998631 00000 0111111
Q ss_pred -----CCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCe
Q 009569 318 -----KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE 392 (532)
Q Consensus 318 -----~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 392 (532)
..-.+++++.-..-|+.++....|+-++++.|..+..|....+.++++..++-..+|++|+.+|.|..||.+.+.
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence 111233333333345666666789999999999999999888999999999988899999999999999998644
Q ss_pred EEEeecC------c-----cCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc-eeee--ecCCceeEEEEcCC--CCEE
Q 009569 393 LESWKGQ------K-----TLRISDMAITDDGKRIISICREAAILLLDREANF-ERWI--EEEEVITSFSLSKD--NKYL 456 (532)
Q Consensus 393 ~~~~~~~------~-----~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~-~~~~--~~~~~i~~~~~sp~--~~~l 456 (532)
....... + ...|+++.|+.+|-.+++|+.+|.|.|||+++.. .... ....+|..+.|.+. +..+
T Consensus 209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v 288 (703)
T KOG2321|consen 209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKV 288 (703)
T ss_pred hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceE
Confidence 3222211 1 1259999999999999999999999999999988 3333 34567889999775 3445
Q ss_pred EEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 457 LVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 457 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
++.. ...++|||-.++ +....+..... +-..|+ -|++.+++++-+++.+..|=+..
T Consensus 289 ~S~D-k~~~kiWd~~~G-k~~asiEpt~~---lND~C~-~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 289 VSMD-KRILKIWDECTG-KPMASIEPTSD---LNDFCF-VPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred Eecc-hHHhhhcccccC-CceeeccccCC---cCceee-ecCCceEEEecCCCcceeEEccc
Confidence 5543 567999998888 66666654433 244566 57888889998988887765543
No 231
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.53 E-value=8.6e-11 Score=116.35 Aligned_cols=251 Identities=15% Similarity=0.228 Sum_probs=169.9
Q ss_pred cccEEEEEEccCCCEEEEEeC----CCeEEEEEeecC-CeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeC-CCcEEEEE
Q 009569 272 SDEVWFLQFSHDGKYLASSSK----DQSAIIWEVKED-GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRWD 345 (532)
Q Consensus 272 ~~~V~~v~~s~~g~~las~s~----dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd 345 (532)
......++++|++++|.++.. ++.|..|.+... +.+..+............++++|++++|+++.. +|.|.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 344567889999999988765 579999999976 677677666645556678999999999999876 78999999
Q ss_pred CCC-CcEEEE---ee----------ccCCceEEEEEeeCCCeEEEEe-CCCcEEEEECCCCe--E---EEeecCccCceE
Q 009569 346 VNS-GECLHV---YE----------KTGVGLISCGWFLDGGGIFAGM-TDKSICLWDLDGRE--L---ESWKGQKTLRIS 405 (532)
Q Consensus 346 ~~~-~~~~~~---~~----------~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~--~---~~~~~~~~~~v~ 405 (532)
+.. |..... +. .......++.|+|+++++++.. ....|.+|+++... + ...........+
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 976 443222 21 1234578899999999888865 34579999987533 3 223334444789
Q ss_pred EEEEeeCCCEEEEEE-CCCeEEEEECC--CCceee---ee-------cCCceeEEEEcCCCCEEEEEe-cCCeEEEEecC
Q 009569 406 DMAITDDGKRIISIC-REAAILLLDRE--ANFERW---IE-------EEEVITSFSLSKDNKYLLVNL-INQEIHLWSIE 471 (532)
Q Consensus 406 ~~~~s~~~~~l~~~~-~dg~I~iwd~~--~~~~~~---~~-------~~~~i~~~~~sp~~~~l~~~~-~dg~i~iwd~~ 471 (532)
.++|+|+++++++.. .++.|.+|++. ++.... .. .......+.++|||++|+++. ..+.|.+|++.
T Consensus 196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 999999999887765 67889999988 333111 11 112577899999999988865 46689999994
Q ss_pred CC-Cc--ceeEEeccccceEEEEEccCCCCCcEEEEEe-CCCcEEEEeC--CCCCceeee
Q 009569 472 SD-PK--LVSRYKGHKRARFVIRSCFGGFEQAFIASGS-EDSQVNIFLS--FSPFAKKIK 525 (532)
Q Consensus 472 ~~-~~--~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs-~dg~i~iw~~--~~~~~~~~~ 525 (532)
.. +. .+..+..... ....+.+ +|+|++|+++. .++.|.+|++ .+|.+....
T Consensus 276 ~~~g~l~~~~~~~~~G~--~Pr~~~~-s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 276 PATGTLTLVQTVPTGGK--FPRHFAF-SPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp TTTTTEEEEEEEEESSS--SEEEEEE--TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred cCCCceEEEEEEeCCCC--CccEEEE-eCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 32 12 2223322112 1244555 99999999887 4678999876 467666554
No 232
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.4e-12 Score=120.17 Aligned_cols=194 Identities=18% Similarity=0.237 Sum_probs=142.0
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCC-EEEEeeCCCcEEEEECCCC--
Q 009569 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH-QLLTCGQEEAIRRWDVNSG-- 349 (532)
Q Consensus 273 ~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~-- 349 (532)
-.+..++|++.-..+|++..|-.|++|+-... ....+ -......|++++|-|.+. .|+.|+ .+-|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~L--ks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln 174 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKL--KSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLN 174 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCC-CCcee--cchhhcceeEEEeccCCcceeeeee-cceeEEEEcCcccc
Confidence 34667889987667889999999999998753 21111 123456799999999764 455544 567899987421
Q ss_pred --c--------EEEEeecc-CCceEEEEEeeCCCeEEEEe-CCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEE
Q 009569 350 --E--------CLHVYEKT-GVGLISCGWFLDGGGIFAGM-TDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRII 417 (532)
Q Consensus 350 --~--------~~~~~~~~-~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 417 (532)
. +...++.. ..+|+++.|.+||..+++++ .|..|.|||.+++..........+.++-+.|||||.+++
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred cccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 1 11122211 36799999999999999987 467899999998777666655556899999999999999
Q ss_pred EEECCCeEEEEECCCC-c-eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecC
Q 009569 418 SICREAAILLLDREAN-F-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (532)
Q Consensus 418 ~~~~dg~I~iwd~~~~-~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~ 471 (532)
+++-|+..++|..... . ....-..+.|...+|+|+|++|+..+ .|.-++|.+.
T Consensus 255 aAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~-sgsp~lysl~ 309 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC-SGSPRLYSLT 309 (445)
T ss_pred EecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE-cCCceEEEEe
Confidence 9999999999965443 3 55555566999999999999887766 3444566553
No 233
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.52 E-value=3.1e-12 Score=130.81 Aligned_cols=201 Identities=17% Similarity=0.185 Sum_probs=142.3
Q ss_pred eEEcccccccEEEEEEccCCCEEEEEeCC---CeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEe-eCCC-
Q 009569 265 LQILEAHSDEVWFLQFSHDGKYLASSSKD---QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC-GQEE- 339 (532)
Q Consensus 265 ~~~l~~h~~~V~~v~~s~~g~~las~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg- 339 (532)
.+.+..+...+.+.+|+|||++|+.++.+ ..|++||+.++.. ..+..+...+.+++|+|||+.|+.. +.++
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~----~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~ 257 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR----EKVASFPGMNGAPAFSPDGSKLAVSLSKDGN 257 (417)
T ss_pred CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE----EEeecCCCCccceEECCCCCEEEEEECCCCC
Confidence 34555577789999999999999987644 4799999986532 2233455566778999999877644 4444
Q ss_pred -cEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCC-C--cEEEEECCCCeEEEeecCccCceEEEEEeeCCCE
Q 009569 340 -AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD-K--SICLWDLDGRELESWKGQKTLRISDMAITDDGKR 415 (532)
Q Consensus 340 -~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 415 (532)
.|++||+.++.... +..+........|+|+++.|+..+.. + .|+++|+.++....+.... ..+..+.|+|+|++
T Consensus 258 ~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~-~~~~~~~~spdg~~ 335 (417)
T TIGR02800 258 PDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRG-GYNASPSWSPDGDL 335 (417)
T ss_pred ccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-CCccCeEECCCCCE
Confidence 59999998876543 33344445567899999988776543 3 5888898877665554333 36778899999999
Q ss_pred EEEEECCC---eEEEEECCCCceeeeecCCceeEEEEcCCCCEEEEEecCC---eEEEEecC
Q 009569 416 IISICREA---AILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQ---EIHLWSIE 471 (532)
Q Consensus 416 l~~~~~dg---~I~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---~i~iwd~~ 471 (532)
++.++.++ .|.+||+.++...............|+||+++|+..+.++ .+++.+..
T Consensus 336 i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 336 IAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred EEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 99988776 8999999886643333333445678999999998877654 35555543
No 234
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=2e-13 Score=130.11 Aligned_cols=277 Identities=17% Similarity=0.302 Sum_probs=207.4
Q ss_pred cccccccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEcc--CCCEEEEEeCCCeEEEEEeecCCeeEEE
Q 009569 233 QRDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSH--DGKYLASSSKDQSAIIWEVKEDGQVSLK 310 (532)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~--~g~~las~s~dg~i~iwd~~~~~~~~~~ 310 (532)
+....+.+++.+..+.+|+-. .....+....+|...|....|-| +...+++++.||.|++=.+...+.....
T Consensus 152 ~~Gd~l~SgSDD~~vv~WdW~------~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t 225 (559)
T KOG1334|consen 152 QRGDVLASGSDDLQVVVWDWV------SGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENT 225 (559)
T ss_pred ccCceeeccCccceEEeehhh------ccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecc
Confidence 334445566667777777533 22444555678999999999999 4467999999999999888766666656
Q ss_pred EEeecCCCCeEEEEeCCCC-CEEEEeeCCCcEEEEECCCCcEEEEee---ccCC---ceEEEEEeeCC-CeEEEEeCCCc
Q 009569 311 HRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSGECLHVYE---KTGV---GLISCGWFLDG-GGIFAGMTDKS 382 (532)
Q Consensus 311 ~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~---~i~~~~~~~~~-~~l~~~~~dg~ 382 (532)
..+..|.++|..++.-|+. ..|.+++.|+.+.-.|++++.....+. .+.. ...+++..|.. ..+++|+.|..
T Consensus 226 ~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf 305 (559)
T KOG1334|consen 226 KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQF 305 (559)
T ss_pred eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhh
Confidence 7778899999999999965 578999999999999998876544332 2222 56788888854 48999999999
Q ss_pred EEEEECCC-------CeEEEeecC-----ccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc---------------e
Q 009569 383 ICLWDLDG-------RELESWKGQ-----KTLRISDMAITDDGKRIISICREAAILLLDREANF---------------E 435 (532)
Q Consensus 383 i~iwd~~~-------~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~---------------~ 435 (532)
+++||.+. +.+..+..+ ..-.|++++|+.++.-++++..|-.|+++.-.-+. .
T Consensus 306 ~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~ 385 (559)
T KOG1334|consen 306 ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKR 385 (559)
T ss_pred hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccch
Confidence 99999864 212222222 22369999999988888888899999999543221 1
Q ss_pred eeeecCC--ceeEEE-EcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEE
Q 009569 436 RWIEEEE--VITSFS-LSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVN 512 (532)
Q Consensus 436 ~~~~~~~--~i~~~~-~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~ 512 (532)
.+.+|.. .|..+- |-|...|+++|+.-|.|.||+-.++ ++++.+.+...- +.|.--+|.-..||+.+-|-.|+
T Consensus 386 vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-eii~~MegDr~V---VNCLEpHP~~PvLAsSGid~DVK 461 (559)
T KOG1334|consen 386 VYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-EIIRFMEGDRHV---VNCLEPHPHLPVLASSGIDHDVK 461 (559)
T ss_pred hhcccccccccceeeeccCccceEEecCccceEEEEecchh-HHHHHhhcccce---EeccCCCCCCchhhccCCcccee
Confidence 2445543 366665 4678899999999999999998888 888888887663 44444488889999999999999
Q ss_pred EEeCCCC
Q 009569 513 IFLSFSP 519 (532)
Q Consensus 513 iw~~~~~ 519 (532)
||...+.
T Consensus 462 IWTP~~~ 468 (559)
T KOG1334|consen 462 IWTPLTA 468 (559)
T ss_pred eecCCcc
Confidence 9998543
No 235
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=5.9e-12 Score=129.04 Aligned_cols=203 Identities=16% Similarity=0.156 Sum_probs=139.6
Q ss_pred eEEcccccccEEEEEEccCCCEEEEEeCC---CeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEE-eeCCC-
Q 009569 265 LQILEAHSDEVWFLQFSHDGKYLASSSKD---QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLT-CGQEE- 339 (532)
Q Consensus 265 ~~~l~~h~~~V~~v~~s~~g~~las~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~dg- 339 (532)
.+.+..|...+...+|+|||+.|+..+.+ ..|.+|++.++.. .. +....+.+....|+|||+.|+. .+.+|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-~~---l~~~~g~~~~~~~SpDG~~la~~~~~~g~ 266 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-EQ---ITNFEGLNGAPAWSPDGSKLAFVLSKDGN 266 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-EE---ccCCCCCcCCeEECCCCCEEEEEEccCCC
Confidence 44555677889999999999999876643 3688999986532 22 2233344557899999998874 44454
Q ss_pred -cEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeC-CC--cEEEEECCCCeEEEeecCccCceEEEEEeeCCCE
Q 009569 340 -AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKR 415 (532)
Q Consensus 340 -~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 415 (532)
.|++||+.+++... +..+........|+|||+.++..+. ++ .|+++|+.++....+.... .......|+|||+.
T Consensus 267 ~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~ 344 (430)
T PRK00178 267 PEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKT 344 (430)
T ss_pred ceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-CCccceEECCCCCE
Confidence 68888998887543 4445555667889999998876653 33 5888888776655544322 23456789999999
Q ss_pred EEEEECCC---eEEEEECCCCceeeeecCCceeEEEEcCCCCEEEEEecC---CeEEEEecCCC
Q 009569 416 IISICREA---AILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLIN---QEIHLWSIESD 473 (532)
Q Consensus 416 l~~~~~dg---~I~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~i~iwd~~~~ 473 (532)
++..+.++ .|.+||+.++...............|+|||++++..+.+ ..|+++++...
T Consensus 345 i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 345 LVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred EEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 98876532 588999988773333333333467899999999877654 34777777543
No 236
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.47 E-value=3.7e-11 Score=109.24 Aligned_cols=230 Identities=17% Similarity=0.235 Sum_probs=150.6
Q ss_pred HHhcccccccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEE-EeCC------CeEEEEEee
Q 009569 230 LDVQRDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLAS-SSKD------QSAIIWEVK 302 (532)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las-~s~d------g~i~iwd~~ 302 (532)
+.+..+...|....+..+.+|+-... +.....+.+.+.+.-+..--..++||- |+.+ ..|.|||-.
T Consensus 11 vs~NQD~ScFava~~~Gfriyn~~P~-------ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTGFRIYNCDPF-------KESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred EEEccCCceEEEEecCceEEEecCch-------hhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecc
Confidence 34445555667777778888864431 111111112222222222223456654 3333 479999943
Q ss_pred cCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECC-CCcEEEEeecc--CCceEEEEEeeCCCeEEE-Ee
Q 009569 303 EDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN-SGECLHVYEKT--GVGLISCGWFLDGGGIFA-GM 378 (532)
Q Consensus 303 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~-~~ 378 (532)
.. +++..+ ....+|.++.+.++ .|++. ..+.|+||... +-+.++.+... ...+.+++-..+...|+. |.
T Consensus 84 k~---~~i~el-~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 84 KE---RCIIEL-SFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred cC---cEEEEE-EeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC
Confidence 22 344444 35688999999876 44443 46799999997 55666665533 233444443334344444 55
Q ss_pred CCCcEEEEECCCCeE--EEeecCccCceEEEEEeeCCCEEEEEECCCe-EEEEECCCCc--eeee--ecCCceeEEEEcC
Q 009569 379 TDKSICLWDLDGREL--ESWKGQKTLRISDMAITDDGKRIISICREAA-ILLLDREANF--ERWI--EEEEVITSFSLSK 451 (532)
Q Consensus 379 ~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-I~iwd~~~~~--~~~~--~~~~~i~~~~~sp 451 (532)
.-|.|.|.|+..... ......|...|.|++.+-+|..+|+++..|+ |+|||..++. ..+. .....|.+++|||
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp 236 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP 236 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC
Confidence 679999999976544 2455566669999999999999999999987 8999999988 2222 2346799999999
Q ss_pred CCCEEEEEecCCeEEEEecCCC
Q 009569 452 DNKYLLVNLINQEIHLWSIESD 473 (532)
Q Consensus 452 ~~~~l~~~~~dg~i~iwd~~~~ 473 (532)
+..+|++.+..|+++||.++..
T Consensus 237 ~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 237 NSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CccEEEEEcCCCeEEEEEeecC
Confidence 9999999999999999998753
No 237
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=2.6e-11 Score=124.25 Aligned_cols=215 Identities=13% Similarity=0.107 Sum_probs=144.0
Q ss_pred eEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCC---CcEEEEECCCCcEEEEeeccCCceEEEEEeeCC
Q 009569 295 SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE---EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG 371 (532)
Q Consensus 295 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~ 371 (532)
.|.++|.... . ...+..+...+....|+|||+.|+..+.+ ..|.+||+.+++... +....+......|+|||
T Consensus 180 ~l~~~d~~g~-~---~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG 254 (430)
T PRK00178 180 TLQRSDYDGA-R---AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDG 254 (430)
T ss_pred EEEEECCCCC-C---ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCC
Confidence 4666676632 2 23344567788999999999999877654 369999999887543 33333445578999999
Q ss_pred CeEEE-EeCCC--cEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEEC-C--CeEEEEECCCCc-eeeeecCCce
Q 009569 372 GGIFA-GMTDK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR-E--AAILLLDREANF-ERWIEEEEVI 444 (532)
Q Consensus 372 ~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d--g~I~iwd~~~~~-~~~~~~~~~i 444 (532)
+.++. ...+| .|++||+.++....+.... .......|+|||+.++..+. + ..|+++|+.++. ..+.......
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~ 333 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLSRVTNHP-AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYN 333 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeEEcccCC-CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc
Confidence 98875 44444 6888999988776655433 24667899999998877664 2 368888887776 3333223334
Q ss_pred eEEEEcCCCCEEEEEecC-C--eEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCC---CcEEEEeCCC
Q 009569 445 TSFSLSKDNKYLLVNLIN-Q--EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED---SQVNIFLSFS 518 (532)
Q Consensus 445 ~~~~~sp~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~d---g~i~iw~~~~ 518 (532)
....|+|||++|+....+ + .|.+||+.++ .. ..+...... ....| +|||+.|+..+.+ ..|+++++..
T Consensus 334 ~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg-~~-~~lt~~~~~---~~p~~-spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG-SV-RILTDTSLD---ESPSV-APNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred cceEECCCCCEEEEEEccCCceEEEEEECCCC-CE-EEccCCCCC---CCceE-CCCCCEEEEEEecCCceEEEEEECCC
Confidence 567899999999877653 3 5888998876 32 333221111 12345 9999998876654 3577888865
Q ss_pred CCc
Q 009569 519 PFA 521 (532)
Q Consensus 519 ~~~ 521 (532)
...
T Consensus 408 ~~~ 410 (430)
T PRK00178 408 RVR 410 (430)
T ss_pred Cce
Confidence 443
No 238
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=2.8e-11 Score=123.82 Aligned_cols=218 Identities=14% Similarity=0.111 Sum_probs=141.6
Q ss_pred eEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCC-C--cEEEEECCCCcEEEEeeccCCceEEEEEeeCC
Q 009569 295 SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-E--AIRRWDVNSGECLHVYEKTGVGLISCGWFLDG 371 (532)
Q Consensus 295 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~ 371 (532)
.+.++|.... .. ..+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++.... ....+......|+|||
T Consensus 199 ~l~i~d~dG~-~~---~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG 273 (448)
T PRK04792 199 QLMIADYDGY-NE---QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDG 273 (448)
T ss_pred EEEEEeCCCC-Cc---eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCC
Confidence 5666676532 11 3344567788899999999998877543 2 599999988875332 2223334578999999
Q ss_pred CeEEE-EeCCCc--EEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEEC-C--CeEEEEECCCCc-eeeeecCCce
Q 009569 372 GGIFA-GMTDKS--ICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR-E--AAILLLDREANF-ERWIEEEEVI 444 (532)
Q Consensus 372 ~~l~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d--g~I~iwd~~~~~-~~~~~~~~~i 444 (532)
+.|+. .+.++. |++||+.++......... ......+|+|||+.|+..+. + ..|+++|+.++. ..+.......
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~-~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~ 352 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALTRITRHR-AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQN 352 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeEECccCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCC
Confidence 98875 455564 888899887776655443 25677899999998877663 2 357788887776 3332233334
Q ss_pred eEEEEcCCCCEEEEEecC-C--eEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeC-CC--cEEEEeCCC
Q 009569 445 TSFSLSKDNKYLLVNLIN-Q--EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE-DS--QVNIFLSFS 518 (532)
Q Consensus 445 ~~~~~sp~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~-dg--~i~iw~~~~ 518 (532)
...+|+|||++|+..+.+ + .|.++|+.++ .. ..+...... ....| +|||+.|+..+. +| .+++++.+.
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g-~~-~~lt~~~~d---~~ps~-spdG~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETG-AM-QVLTSTRLD---ESPSV-APNGTMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCC-Ce-EEccCCCCC---CCceE-CCCCCEEEEEEecCCceEEEEEECCC
Confidence 567999999998876553 3 4666787776 32 333322111 12345 899998876554 33 377888765
Q ss_pred CCceee
Q 009569 519 PFAKKI 524 (532)
Q Consensus 519 ~~~~~~ 524 (532)
.....+
T Consensus 427 ~~~~~l 432 (448)
T PRK04792 427 RFKARL 432 (448)
T ss_pred CceEEC
Confidence 444333
No 239
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1.8e-11 Score=125.29 Aligned_cols=210 Identities=15% Similarity=0.146 Sum_probs=137.1
Q ss_pred EEcccccccEEEEEEccCCCEEEEEeCC---CeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEE-eeCCCc-
Q 009569 266 QILEAHSDEVWFLQFSHDGKYLASSSKD---QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLT-CGQEEA- 340 (532)
Q Consensus 266 ~~l~~h~~~V~~v~~s~~g~~las~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~dg~- 340 (532)
+.+..+...+.+..|||||+.|+..+.+ ..|++||+.++.. ..+..+. .......|+|||+.|+. .+.++.
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-~~lt~~~---g~~~~~~wSPDG~~La~~~~~~g~~ 286 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-EKVTSFP---GINGAPRFSPDGKKLALVLSKDGQP 286 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-EEecCCC---CCcCCeeECCCCCEEEEEEeCCCCe
Confidence 3444566788899999999999876543 2588888876532 2333232 33446899999998765 455664
Q ss_pred -EEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeC-CC--cEEEEECCCCeEEEeecCccCceEEEEEeeCCCEE
Q 009569 341 -IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRI 416 (532)
Q Consensus 341 -i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 416 (532)
|++||+.+++.. .+..+........|+|||+.++..+. ++ .|+++|+.++......... ......+|+|||+++
T Consensus 287 ~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpDG~~l 364 (448)
T PRK04792 287 EIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG-EQNLGGSITPDGRSM 364 (448)
T ss_pred EEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC-CCCcCeeECCCCCEE
Confidence 888898887654 34444455677899999998877653 33 5777788776665543222 134457899999998
Q ss_pred EEEECC-C--eEEEEECCCCceeeeecCCceeEEEEcCCCCEEEEEecC-C--eEEEEecCCCCcceeEEecc
Q 009569 417 ISICRE-A--AILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLIN-Q--EIHLWSIESDPKLVSRYKGH 483 (532)
Q Consensus 417 ~~~~~d-g--~I~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~ 483 (532)
+..+.+ + .|.++|+.++...............|+|||+.|+..+.+ + .+++++... .....+..+
T Consensus 365 ~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G--~~~~~l~~~ 435 (448)
T PRK04792 365 IMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG--RFKARLPAG 435 (448)
T ss_pred EEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC--CceEECcCC
Confidence 876643 3 467788887763332222223355899999988876543 3 377777643 445555444
No 240
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=8.3e-12 Score=116.34 Aligned_cols=206 Identities=14% Similarity=0.119 Sum_probs=152.7
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCee-EEEEEeecCCCCeEEEEeCCCCC-EEEEeeCC--CcEEEEE
Q 009569 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQV-SLKHRLSGHRKPVFTVSWSPNDH-QLLTCGQE--EAIRRWD 345 (532)
Q Consensus 270 ~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~d--g~i~iwd 345 (532)
...++|..++.. | ..|++|-.+|.+.+|....+... .....+..+ ..+..+.-++... .+++|+.. ..+.|||
T Consensus 103 l~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 103 LGTKSIKGLKLA-D-GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWD 179 (412)
T ss_pred cccccccchhhc-C-CEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeee
Confidence 344555555543 2 36788889999999999844211 122222223 4466666666544 55568888 7899999
Q ss_pred CCCCcEEEEeecc---------CCceEEEEEeeC--CCeEEEEeCCCcEEEEECCC-CeEEEeecCccCceEEEEEeeCC
Q 009569 346 VNSGECLHVYEKT---------GVGLISCGWFLD--GGGIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMAITDDG 413 (532)
Q Consensus 346 ~~~~~~~~~~~~~---------~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~ 413 (532)
++..+.+..-+.. .-.++++.|.+. ...|++++.-+.+++||.+. +.....+.....+++++...|++
T Consensus 180 le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g 259 (412)
T KOG3881|consen 180 LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSG 259 (412)
T ss_pred cccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCC
Confidence 9888555433321 234567888887 88999999999999999974 22233333334489999999999
Q ss_pred CEEEEEECCCeEEEEECCCCc---eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeE
Q 009569 414 KRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSR 479 (532)
Q Consensus 414 ~~l~~~~~dg~I~iwd~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 479 (532)
+++++|...+.+..||.+.+. ..+.+..+.|.++..+|.++++++++-|..++|+|+.+. +++..
T Consensus 260 n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr-kll~k 327 (412)
T KOG3881|consen 260 NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR-KLLHK 327 (412)
T ss_pred cEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc-hhhhh
Confidence 999999999999999999988 446678899999999999999999999999999999996 55544
No 241
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.44 E-value=3e-13 Score=128.27 Aligned_cols=193 Identities=13% Similarity=0.149 Sum_probs=168.0
Q ss_pred eEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecC
Q 009569 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ 399 (532)
Q Consensus 320 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 399 (532)
-..+.++.+|.+++.|+..|.|-.+|+.+++....+.. ...|.++.|..+..+++++ ....++|||-.+.++..+..+
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtElHClk~~ 209 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTELHCLKRH 209 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecCCCcEEeehhhc
Confidence 46788999999999999999999999999988777653 4568889998877777665 567899999999998888776
Q ss_pred ccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcce
Q 009569 400 KTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLV 477 (532)
Q Consensus 400 ~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~ 477 (532)
. .|..+.|.|.--+|++++..|.++.-|+.+++ ..+....+.+..++-+|-+..+-+|..+|+|.+|...+. +++
T Consensus 210 ~--~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk-ePL 286 (545)
T KOG1272|consen 210 I--RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK-EPL 286 (545)
T ss_pred C--chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc-chH
Confidence 6 79999999998899999999999999999998 445556678889999999999999999999999999887 888
Q ss_pred eEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCC
Q 009569 478 SRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPF 520 (532)
Q Consensus 478 ~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~ 520 (532)
..+-.|..++..+.+ .++|.|++|.+.|..++|||+..-.
T Consensus 287 vKiLcH~g~V~siAv---~~~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 287 VKILCHRGPVSSIAV---DRGGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred HHHHhcCCCcceEEE---CCCCcEEeecccccceeEeeecccc
Confidence 888899998766544 8999999999999999999998755
No 242
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.43 E-value=1.1e-10 Score=106.53 Aligned_cols=252 Identities=15% Similarity=0.173 Sum_probs=168.0
Q ss_pred CCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCC-EEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEE
Q 009569 244 DSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322 (532)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 322 (532)
++.+.+|+... .+-...+....+++.+++|||||+ +|.+...|-.|.||.+.+... .-++.....+..
T Consensus 70 ~~~vqvwsl~Q-------pew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~----~~~~~pK~~~kg 138 (447)
T KOG4497|consen 70 DPKVQVWSLVQ-------PEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG----YLLPHPKTNVKG 138 (447)
T ss_pred cceEEEEEeec-------ceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee----EEecccccCcee
Confidence 44556665432 222344556678899999999995 555677899999999986422 222333445688
Q ss_pred EEeCCCCCEEEEeeCC------------------------------------CcEEEEECCCCcEEEEeeccCCceEEEE
Q 009569 323 VSWSPNDHQLLTCGQE------------------------------------EAIRRWDVNSGECLHVYEKTGVGLISCG 366 (532)
Q Consensus 323 l~~s~~~~~l~s~~~d------------------------------------g~i~iwd~~~~~~~~~~~~~~~~i~~~~ 366 (532)
++|+|||++.+.++.- ..+.+||.--.-.+..++ -+-++..+.
T Consensus 139 ~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~ 217 (447)
T KOG4497|consen 139 YAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVE 217 (447)
T ss_pred EEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEE
Confidence 8999999887766532 224445432221222222 235688899
Q ss_pred EeeCCCeEEEEeCCCcEEEEECCCCeE-----------------------------------------------------
Q 009569 367 WFLDGGGIFAGMTDKSICLWDLDGREL----------------------------------------------------- 393 (532)
Q Consensus 367 ~~~~~~~l~~~~~dg~i~iwd~~~~~~----------------------------------------------------- 393 (532)
|+|.++++++|+.|+.+++.+--+.+.
T Consensus 218 wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE 297 (447)
T KOG4497|consen 218 WSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYE 297 (447)
T ss_pred eccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhh
Confidence 999999999999999888743211000
Q ss_pred --------EEee-----cCccCceEEEEEeeCCCEEEEEEC--CCeEEEEECCCCc-eeeeecCCceeEEEEcCCCCEEE
Q 009569 394 --------ESWK-----GQKTLRISDMAITDDGKRIISICR--EAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLL 457 (532)
Q Consensus 394 --------~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~--dg~I~iwd~~~~~-~~~~~~~~~i~~~~~sp~~~~l~ 457 (532)
.... ......+.-++|++|..++++-.. -+.+-+||++..+ ........+|....|+|....|+
T Consensus 298 ~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~ 377 (447)
T KOG4497|consen 298 QQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLV 377 (447)
T ss_pred hhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEE
Confidence 0000 011124677899999988887653 3679999999988 56666788999999999998888
Q ss_pred EEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEE
Q 009569 458 VNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVN 512 (532)
Q Consensus 458 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~ 512 (532)
++.....+++|..... ..+.. ...+..+..++| .-+|.+++..+.|....
T Consensus 378 vctg~srLY~W~psg~-~~V~v---P~~GF~i~~l~W-~~~g~~i~l~~kDafc~ 427 (447)
T KOG4497|consen 378 VCTGKSRLYFWAPSGP-RVVGV---PKKGFNIQKLQW-LQPGEFIVLCGKDAFCV 427 (447)
T ss_pred EEcCCceEEEEcCCCc-eEEec---CCCCceeeeEEe-cCCCcEEEEEcCCceEE
Confidence 8887888999997664 33332 222234556677 77888999888886533
No 243
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=1.5e-13 Score=139.22 Aligned_cols=272 Identities=14% Similarity=0.144 Sum_probs=191.8
Q ss_pred cchHHHHHHHHHHhcccccccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEE
Q 009569 219 EKRLEHLVEKALDVQRDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAII 298 (532)
Q Consensus 219 ~~rl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~i 298 (532)
+..|..++.+.+..|...|.........+++|..|.|.......+....+.+..+. .-.+++.+. +-.+..|... |
T Consensus 1012 ~~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~~ap~N~t~Rl~~--rel~~~y~g-V~g~~~dr~~-I 1087 (1516)
T KOG1832|consen 1012 RLSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLLEAPLNMTGRLGT--RELQSFYSG-VHGNRRDRQF-I 1087 (1516)
T ss_pred CCcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHhhcchhhhhcccc--hhhcCcccc-cccCcccchh-h
Confidence 45788999999999999999988888999999999996532211111111110000 001111110 1112223221 1
Q ss_pred EEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEe
Q 009569 299 WEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGM 378 (532)
Q Consensus 299 wd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 378 (532)
| ..++...++..|+...+|++|+-+.++|+.|+..|.|+++++.+|.......+|...|+-+.-+.+|..+++.+
T Consensus 1088 F-----SRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltss 1162 (1516)
T KOG1832|consen 1088 F-----SRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSS 1162 (1516)
T ss_pred H-----hhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeec
Confidence 1 12345567788999999999999999999999999999999999999999999999999999999999888765
Q ss_pred CCC--cEEEEECCC--CeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--eeee----ecCCceeEEE
Q 009569 379 TDK--SICLWDLDG--RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWI----EEEEVITSFS 448 (532)
Q Consensus 379 ~dg--~i~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~----~~~~~i~~~~ 448 (532)
.-. -..+|++.. +....+. .-.++.|+.....-+.|+......+||+.+.. .++. .....-++..
T Consensus 1163 s~S~PlsaLW~~~s~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1163 SSSSPLSALWDASSTGGPRHSFD-----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred cccCchHHHhccccccCcccccc-----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccc
Confidence 433 467899864 2222222 45678888776666667777789999999987 2222 2233447889
Q ss_pred EcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC
Q 009569 449 LSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSP 519 (532)
Q Consensus 449 ~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~ 519 (532)
|+|+.++++- ||. +||++.. +.++.|...... +...| +|+|.-++.-++ |||+++-
T Consensus 1238 FsP~D~LIln---dGv--LWDvR~~-~aIh~FD~ft~~---~~G~F-HP~g~eVIINSE-----IwD~RTF 1293 (1516)
T KOG1832|consen 1238 FSPCDTLILN---DGV--LWDVRIP-EAIHRFDQFTDY---GGGGF-HPSGNEVIINSE-----IWDMRTF 1293 (1516)
T ss_pred cCCCcceEee---Cce--eeeeccH-HHHhhhhhheec---ccccc-cCCCceEEeech-----hhhhHHH
Confidence 9999988875 664 9999988 788887655532 33456 999999998887 9998874
No 244
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.41 E-value=5.9e-10 Score=110.37 Aligned_cols=183 Identities=12% Similarity=0.154 Sum_probs=128.4
Q ss_pred EEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEE
Q 009569 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCG 366 (532)
Q Consensus 287 las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 366 (532)
+++-..++.|.+.|..+. +.+..+......-..+.|+|||+++++++.||.|.++|+.+++.+..+.... ...+++
T Consensus 9 ~V~~~~~~~v~viD~~t~---~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~ 84 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATN---KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIA 84 (369)
T ss_dssp EEEEGGGTEEEEEETTT----SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEE
T ss_pred EEEecCCCEEEEEECCCC---eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEE
Confidence 345667899999998765 3455665544444567899999999999999999999999999998887544 567899
Q ss_pred EeeCCCeEEEEe-CCCcEEEEECCCCeEEEeecC-------ccCceEEEEEeeCCCEEEEEEC-CCeEEEEECCCCc---
Q 009569 367 WFLDGGGIFAGM-TDKSICLWDLDGRELESWKGQ-------KTLRISDMAITDDGKRIISICR-EAAILLLDREANF--- 434 (532)
Q Consensus 367 ~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~-dg~I~iwd~~~~~--- 434 (532)
+++||+++++++ ..+.+.++|.++.+....... ...++..+..+|....++..-. .+.|.+.|.....
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 999999998876 688999999988655443321 2336788888898886666555 4889999987654
Q ss_pred eeeeecCCceeEEEEcCCCCEEEEE-ecCCeEEEEecCCC
Q 009569 435 ERWIEEEEVITSFSLSKDNKYLLVN-LINQEIHLWSIESD 473 (532)
Q Consensus 435 ~~~~~~~~~i~~~~~sp~~~~l~~~-~~dg~i~iwd~~~~ 473 (532)
...+..........|+|+++|++++ ..++.|-++|..++
T Consensus 165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred eeeecccccccccccCcccceeeecccccceeEEEeeccc
Confidence 3455556677889999999988775 44667888887765
No 245
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.40 E-value=1.2e-10 Score=114.40 Aligned_cols=206 Identities=17% Similarity=0.192 Sum_probs=155.3
Q ss_pred ccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEe------CC--------------CCCEEEEeeCCCc
Q 009569 281 SHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSW------SP--------------NDHQLLTCGQEEA 340 (532)
Q Consensus 281 s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~------s~--------------~~~~l~s~~~dg~ 340 (532)
.|.+.|+|....||.+++|+...+...........-.+...+..| +| |...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 356679999999999999999876322111111222334444444 22 3346777888999
Q ss_pred EEEEECCCCcEEEEee--ccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEE
Q 009569 341 IRRWDVNSGECLHVYE--KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIIS 418 (532)
Q Consensus 341 i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 418 (532)
|.+|++..|+....+. .|.+.|.++.++.+-..|.+++.|+.+..|+.....+..........+.+++++|||+.+++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 9999999999887776 67899999999999999999999999999999887766665555558999999999999998
Q ss_pred EECCCeEEEEECCCCc--eeeeecCCceeEEEEcCC-----CCEEEEEe-cCCeEEEEecCCC---CcceeEEeccccce
Q 009569 419 ICREAAILLLDREANF--ERWIEEEEVITSFSLSKD-----NKYLLVNL-INQEIHLWSIESD---PKLVSRYKGHKRAR 487 (532)
Q Consensus 419 ~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~-----~~~l~~~~-~dg~i~iwd~~~~---~~~~~~~~~~~~~~ 487 (532)
++ +.|++||+++++ .++.+|.++|.+++|..+ |.+++++. .+..|.+|-+... +...+.+.....++
T Consensus 162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~dipv 239 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVPDIPV 239 (541)
T ss_pred cc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheeeccCCCCe
Confidence 76 489999999998 888999999999999887 77777664 3445777766542 23444555555443
Q ss_pred E
Q 009569 488 F 488 (532)
Q Consensus 488 ~ 488 (532)
+
T Consensus 240 ~ 240 (541)
T KOG4547|consen 240 T 240 (541)
T ss_pred E
Confidence 3
No 246
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=1.2e-10 Score=118.10 Aligned_cols=202 Identities=16% Similarity=0.071 Sum_probs=129.4
Q ss_pred EcccccccEEEEEEccCCCEE---EEEeCCC--eEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeC-CC-
Q 009569 267 ILEAHSDEVWFLQFSHDGKYL---ASSSKDQ--SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EE- 339 (532)
Q Consensus 267 ~l~~h~~~V~~v~~s~~g~~l---as~s~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg- 339 (532)
.+..+...+.+-+|||||+.+ ++...+| .|.+.++.++.. ..+.. ..+.....+|||||+.|+..+. +|
T Consensus 179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-~~lt~---~~g~~~~p~wSPDG~~Laf~s~~~g~ 254 (428)
T PRK01029 179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-KKILA---LQGNQLMPTFSPRKKLLAFISDRYGN 254 (428)
T ss_pred EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-eEeec---CCCCccceEECCCCCEEEEEECCCCC
Confidence 344455567788999999752 2343343 577777775432 23333 3344556899999998887653 22
Q ss_pred ---cEEEEECCCC---cEEEEeeccCCceEEEEEeeCCCeEEEEe-CCCc--EEEEECC--CCeEEEeecCccCceEEEE
Q 009569 340 ---AIRRWDVNSG---ECLHVYEKTGVGLISCGWFLDGGGIFAGM-TDKS--ICLWDLD--GRELESWKGQKTLRISDMA 408 (532)
Q Consensus 340 ---~i~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~--i~iwd~~--~~~~~~~~~~~~~~v~~~~ 408 (532)
.+.+|++.++ +...............+|+|||+.|+..+ .+|. |+++++. ++....+.... ..+....
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~-~~~~~p~ 333 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY-RNSSCPA 333 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCC-CCcccee
Confidence 3445777653 33333333233446789999999887765 4564 5555554 23333333322 3677889
Q ss_pred EeeCCCEEEEEECC---CeEEEEECCCCc-eeeeecCCceeEEEEcCCCCEEEEEec---CCeEEEEecCCC
Q 009569 409 ITDDGKRIISICRE---AAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLI---NQEIHLWSIESD 473 (532)
Q Consensus 409 ~s~~~~~l~~~~~d---g~I~iwd~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~---dg~i~iwd~~~~ 473 (532)
|+|||+.|+..+.+ ..|.+||+.++. ..+......+....|+|||++|+.... ...|++||+.++
T Consensus 334 wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 334 WSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred ECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 99999998877643 469999998887 333333446778999999998876543 346888998776
No 247
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=3.7e-10 Score=114.64 Aligned_cols=222 Identities=8% Similarity=0.048 Sum_probs=137.8
Q ss_pred CeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCE--E-EEeeCCC--cEEEEECCCCcEEEEeeccCCceEEEEEe
Q 009569 294 QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQ--L-LTCGQEE--AIRRWDVNSGECLHVYEKTGVGLISCGWF 368 (532)
Q Consensus 294 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~--l-~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~ 368 (532)
..|.+.|...+ .. ..+......+..-+|||||+. + ++...+| .|.+.++.+++.... ....+......|+
T Consensus 165 ~~l~~~d~dG~-~~---~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wS 239 (428)
T PRK01029 165 GELWSVDYDGQ-NL---RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFS 239 (428)
T ss_pred ceEEEEcCCCC-Cc---eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEEC
Confidence 35666666533 22 234445566778899999975 2 2333343 588889988765433 2234445568999
Q ss_pred eCCCeEEEEeC-CC----cEEEEECCC---CeEEEeecCccCceEEEEEeeCCCEEEEEE-CCCe--EEEEECCC--Cc-
Q 009569 369 LDGGGIFAGMT-DK----SICLWDLDG---RELESWKGQKTLRISDMAITDDGKRIISIC-REAA--ILLLDREA--NF- 434 (532)
Q Consensus 369 ~~~~~l~~~~~-dg----~i~iwd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~--I~iwd~~~--~~- 434 (532)
|||+.|+..+. +| .+..|++.+ +................+|+|||+.|+..+ .+|. |+++++.. ..
T Consensus 240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence 99998887553 22 344467654 333334333222456789999999888766 4554 55555542 22
Q ss_pred eeeeecCCceeEEEEcCCCCEEEEEecC---CeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeC---C
Q 009569 435 ERWIEEEEVITSFSLSKDNKYLLVNLIN---QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE---D 508 (532)
Q Consensus 435 ~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~---d 508 (532)
..+......+....|||||++|+..+.+ ..|++||+.++ +. ..+...... .....| +|||+.|+..+. .
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g-~~-~~Lt~~~~~--~~~p~w-SpDG~~L~f~~~~~g~ 394 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG-RD-YQLTTSPEN--KESPSW-AIDSLHLVYSAGNSNE 394 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC-Ce-EEccCCCCC--ccceEE-CCCCCEEEEEECCCCC
Confidence 3333444567789999999998876543 36999999887 33 333322222 122455 899998875433 3
Q ss_pred CcEEEEeCCCCCceeee
Q 009569 509 SQVNIFLSFSPFAKKIK 525 (532)
Q Consensus 509 g~i~iw~~~~~~~~~~~ 525 (532)
..|++|++.+++...+.
T Consensus 395 ~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 395 SELYLISLITKKTRKIV 411 (428)
T ss_pred ceEEEEECCCCCEEEee
Confidence 56999999988766554
No 248
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.37 E-value=1.3e-11 Score=128.11 Aligned_cols=152 Identities=21% Similarity=0.335 Sum_probs=134.7
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEE-Eee
Q 009569 278 LQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH-VYE 356 (532)
Q Consensus 278 v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~ 356 (532)
+.++++.-++++|+.-+.|.+|+....+. ...+.+|.+.|.++.|+-||.+++++|.|.++++|++++.+... ..-
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~---p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~f 215 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNK---PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGF 215 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCC---cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccc
Confidence 44667778999999999999999984322 22678999999999999999999999999999999999988766 566
Q ss_pred ccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc
Q 009569 357 KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF 434 (532)
Q Consensus 357 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~ 434 (532)
+|.+.++.++|+|+ .+++++.|.+.++|+.+...+..+..+....|..++..++...+++++.|+.+++||+....
T Consensus 216 gHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 216 GHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred cccceeEEEEeccc--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 89999999999988 99999999999999999888888888877889999999999999999999999999987643
No 249
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=3.7e-10 Score=110.18 Aligned_cols=237 Identities=13% Similarity=0.184 Sum_probs=155.5
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEe-----eC-----CCcEE
Q 009569 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC-----GQ-----EEAIR 342 (532)
Q Consensus 273 ~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-----~~-----dg~i~ 342 (532)
.++...++|++|+++|.+. +..++|++..++. .+.+... ..+.++.|||.+.+|.+- .. .-.+.
T Consensus 35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~---~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~ 108 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLK---VVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVL 108 (566)
T ss_pred CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCc---EEEEecc--ceeeeeeecccccccccccccccccCCCCCCCcee
Confidence 3467888999999988764 5689999988664 2222222 268899999999988652 11 23477
Q ss_pred EEECCCCcEEEEe----------------------------------------eccCCceEEEEEeeCC--CeEEE----
Q 009569 343 RWDVNSGECLHVY----------------------------------------EKTGVGLISCGWFLDG--GGIFA---- 376 (532)
Q Consensus 343 iwd~~~~~~~~~~----------------------------------------~~~~~~i~~~~~~~~~--~~l~~---- 376 (532)
+|+++++.....+ .-|...|+.+.++|.+ ..+++
T Consensus 109 v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 109 VYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred eeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccC
Confidence 8888764321100 0123334455555431 11111
Q ss_pred -EeCCCcEEE---------------------------------------------------------EECCCCeEEEeec
Q 009569 377 -GMTDKSICL---------------------------------------------------------WDLDGRELESWKG 398 (532)
Q Consensus 377 -~~~dg~i~i---------------------------------------------------------wd~~~~~~~~~~~ 398 (532)
.+.-+.++| .++++.. .....
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s-~~V~L 267 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES-VSVPL 267 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce-EEEec
Confidence 111122333 3333211 12222
Q ss_pred CccCceEEEEEeeCCCEEEEE--ECCCeEEEEECCCCceeeeecCCceeEEEEcCCCCEEEEEec---CCeEEEEecCCC
Q 009569 399 QKTLRISDMAITDDGKRIISI--CREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLI---NQEIHLWSIESD 473 (532)
Q Consensus 399 ~~~~~v~~~~~s~~~~~l~~~--~~dg~I~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~---dg~i~iwd~~~~ 473 (532)
...++|+++.|+|+++-++++ -.-..+.|||++..- .+.-..++-+++-|+|.|++|+.++. .|.|-|||+.+.
T Consensus 268 ~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~-v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~ 346 (566)
T KOG2315|consen 268 LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP-VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR 346 (566)
T ss_pred CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE-eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccch
Confidence 345699999999999876654 466789999987654 33445667789999999999998876 468999999996
Q ss_pred CcceeEEeccccceEEEEEccCCCCCcEEEEEeC------CCcEEEEeCCCCCcee
Q 009569 474 PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE------DSQVNIFLSFSPFAKK 523 (532)
Q Consensus 474 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~------dg~i~iw~~~~~~~~~ 523 (532)
+++.++...... -+.| +|||.+++|++. |+.++||+........
T Consensus 347 -K~i~~~~a~~tt----~~eW-~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~ 396 (566)
T KOG2315|consen 347 -KLIAKFKAANTT----VFEW-SPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHE 396 (566)
T ss_pred -hhccccccCCce----EEEE-cCCCcEEEEEeccccEEecCCeEEEEecCceeeh
Confidence 888888876653 2455 999999999864 7899999998754433
No 250
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.35 E-value=4.6e-09 Score=104.06 Aligned_cols=201 Identities=15% Similarity=0.256 Sum_probs=138.8
Q ss_pred ccccEEEEEEccCCCEEEEEe-CCCeEEEEEeecCCeeEEEEEeec-----------CCCCeEEEEeCCCCCEEEEeeC-
Q 009569 271 HSDEVWFLQFSHDGKYLASSS-KDQSAIIWEVKEDGQVSLKHRLSG-----------HRKPVFTVSWSPNDHQLLTCGQ- 337 (532)
Q Consensus 271 h~~~V~~v~~s~~g~~las~s-~dg~i~iwd~~~~~~~~~~~~~~~-----------h~~~v~~l~~s~~~~~l~s~~~- 337 (532)
.......++++|++++|+++. .+|.|.++++...+.+........ ......++.|+|++++++++..
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG 164 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG 164 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence 344567899999999999887 489999999997665544322221 2345789999999998888754
Q ss_pred CCcEEEEECCCCc--EE--EEee-ccCCceEEEEEeeCCCeEEEEe-CCCcEEEEECC--CCeEEEee---cC----c-c
Q 009569 338 EEAIRRWDVNSGE--CL--HVYE-KTGVGLISCGWFLDGGGIFAGM-TDKSICLWDLD--GRELESWK---GQ----K-T 401 (532)
Q Consensus 338 dg~i~iwd~~~~~--~~--~~~~-~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~--~~~~~~~~---~~----~-~ 401 (532)
...|.+|++.... .. ..+. ........+.|+|+++++++.. .++.|.++++. ++.+.... .. . .
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~ 244 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGE 244 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSS
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccccccc
Confidence 3489999997654 32 2222 3456788999999999887655 57789999887 44332221 11 1 1
Q ss_pred CceEEEEEeeCCCEEEEEE-CCCeEEEEECCC--Cce---eeee-cCCceeEEEEcCCCCEEEEEec-CCeEEEEecC
Q 009569 402 LRISDMAITDDGKRIISIC-REAAILLLDREA--NFE---RWIE-EEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIE 471 (532)
Q Consensus 402 ~~v~~~~~s~~~~~l~~~~-~dg~I~iwd~~~--~~~---~~~~-~~~~i~~~~~sp~~~~l~~~~~-dg~i~iwd~~ 471 (532)
.....++++|||++|+++. .++.|.+|++.. +.. .... .......++++|+|++|+++.. ++.|.+|++.
T Consensus 245 ~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 245 NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 2578999999999988776 567899999943 332 2222 2445889999999999998874 5689999874
No 251
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.34 E-value=4.6e-11 Score=109.64 Aligned_cols=254 Identities=13% Similarity=0.148 Sum_probs=184.4
Q ss_pred cceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcE
Q 009569 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (532)
Q Consensus 262 ~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 341 (532)
...++.++||.+.|++...-|...-+++.+.|.+++||--.+.++.-+ ........+++++.+.++...|+.|-.+|++
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wp-sI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWP-SIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCc-hhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 345677899999999999999888899999999999997765443211 1122346788999999999999999999999
Q ss_pred EEEECC----CCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCC-eEEEeecCccCceEEEEEeeCCCEE
Q 009569 342 RRWDVN----SGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR-ELESWKGQKTLRISDMAITDDGKRI 416 (532)
Q Consensus 342 ~iwd~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l 416 (532)
.-+.+. ....++.+..|...+..+.|+-....+++.+.|..+.-.-.+.+ .+..+.... ..+++.+.-. +.
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~--~~t~~~~d~~--~~ 168 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET--PASALQFDAL--YA 168 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec--cCCCCceeeE--EE
Confidence 888763 33445666788999999999988889999998887654433322 111111100 1111122111 45
Q ss_pred EEEECCCeEEEEECCCCc----eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEE
Q 009569 417 ISICREAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRS 492 (532)
Q Consensus 417 ~~~~~dg~I~iwd~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~ 492 (532)
..|...|.|..-.+.... .++.+|...+++++|.|..+.|.+|..|..+.+||+.........+.+|...+.. .
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~--l 246 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQA--L 246 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhh--h
Confidence 555666666665554333 5677899999999999999999999999999999998776677788888887444 3
Q ss_pred ccCCCCCcEEEEEeCCCcEEEEeCCCCCcee
Q 009569 493 CFGGFEQAFIASGSEDSQVNIFLSFSPFAKK 523 (532)
Q Consensus 493 ~~~s~d~~~l~sgs~dg~i~iw~~~~~~~~~ 523 (532)
+. -+.-+.+.++++||.|.+|+.+......
T Consensus 247 ~~-~~~t~~l~S~~edg~i~~w~mn~~r~et 276 (404)
T KOG1409|consen 247 SY-AQHTRQLISCGEDGGIVVWNMNVKRVET 276 (404)
T ss_pred hh-hhhheeeeeccCCCeEEEEeccceeecC
Confidence 33 4455788999999999999998754433
No 252
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=8.7e-09 Score=96.08 Aligned_cols=255 Identities=14% Similarity=0.181 Sum_probs=174.1
Q ss_pred cccccEEEEEEccCCCEEEEEeC---CCeEEEEEeecC-CeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeC-CCcEEEE
Q 009569 270 AHSDEVWFLQFSHDGKYLASSSK---DQSAIIWEVKED-GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRW 344 (532)
Q Consensus 270 ~h~~~V~~v~~s~~g~~las~s~---dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iw 344 (532)
.+.+.++-++|+|++++|.++-. +|.|..|.+... +.+..+........+-..+++++++++++++.. .|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 46678899999999999988754 578888888743 555555554444455588999999999999987 4789999
Q ss_pred ECCC-CcEEE--EeeccCCc----------eEEEEEeeCCCeEEEEeC-CCcEEEEECCCCeEEEee---cCccCceEEE
Q 009569 345 DVNS-GECLH--VYEKTGVG----------LISCGWFLDGGGIFAGMT-DKSICLWDLDGRELESWK---GQKTLRISDM 407 (532)
Q Consensus 345 d~~~-~~~~~--~~~~~~~~----------i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~---~~~~~~v~~~ 407 (532)
-+.. |.... ....|.+. +....+.|+++++++..- --.|.+|++..+.+.... .......+.|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 9855 43321 12223333 778899999999988753 336999999865443222 1333468899
Q ss_pred EEeeCCCEEEEEE-CCCeEEEEECCCCc---eee---------eecCCceeEEEEcCCCCEEEEEec-CCeEEEEecCCC
Q 009569 408 AITDDGKRIISIC-REAAILLLDREANF---ERW---------IEEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESD 473 (532)
Q Consensus 408 ~~s~~~~~l~~~~-~dg~I~iwd~~~~~---~~~---------~~~~~~i~~~~~sp~~~~l~~~~~-dg~i~iwd~~~~ 473 (532)
+|+|++++..+.+ -+++|.+|...... ..+ +........|.++|||++|.++.. ...|.+|.+...
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 9999999887766 68899999988742 111 123456778999999999998754 347888888654
Q ss_pred CcceeEEeccc-cceEEEEEccCCCCCcEEEEEeCCC-cEEEEeCC--CCCceeee
Q 009569 474 PKLVSRYKGHK-RARFVIRSCFGGFEQAFIASGSEDS-QVNIFLSF--SPFAKKIK 525 (532)
Q Consensus 474 ~~~~~~~~~~~-~~~~~i~~~~~s~d~~~l~sgs~dg-~i~iw~~~--~~~~~~~~ 525 (532)
...+....... ...+...+.+ ++.+++|+++.+++ .|.+|.++ +|.+..+.
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i-~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNI-NPSGRFLIAANQKSDNITVFERDKETGRLTLLG 331 (346)
T ss_pred CCEEEEEEEeccCCcCCcccee-CCCCCEEEEEccCCCcEEEEEEcCCCceEEecc
Confidence 33333322111 1111233455 88999999888754 47787665 56555543
No 253
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.30 E-value=3.8e-10 Score=101.63 Aligned_cols=246 Identities=11% Similarity=0.118 Sum_probs=161.6
Q ss_pred cccEEEEEEcc---CCC-EEEEEeCCCeEEEEEeecCCeeEEEEEeecCC---CCeEEEEeCCCCCEEEEeeCCCcEEEE
Q 009569 272 SDEVWFLQFSH---DGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR---KPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (532)
Q Consensus 272 ~~~V~~v~~s~---~g~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~---~~v~~l~~s~~~~~l~s~~~dg~i~iw 344 (532)
+..+..+.|.. +|. .++-+-.+|.|.++..........+..+..-. ....++.|++.+..++++..+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 44566777765 555 45667778999999876332211111121111 124578899999999999999999966
Q ss_pred ECCCCcE--EEEeeccCCceEEEEEee-CCCeEEEEeCCCcEEEEECCCCe--EEEeecCccCceEEEEEee-CCCEEEE
Q 009569 345 DVNSGEC--LHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRE--LESWKGQKTLRISDMAITD-DGKRIIS 418 (532)
Q Consensus 345 d~~~~~~--~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~-~~~~l~~ 418 (532)
+...... ++..+.|...++.+.|+. +.+.+++|+.|+.+..||++-.. +......|...|.+|.-+| .+.+|++
T Consensus 149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T 228 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT 228 (339)
T ss_pred ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence 6655543 347889999999999986 45688999999999999998322 2222334445788888876 5779999
Q ss_pred EECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCC--CEEEEEecCCeEEEEecCCCC-c---ceeEEeccccceEEE
Q 009569 419 ICREAAILLLDREANF--ERWIEEEEVITSFSLSKDN--KYLLVNLINQEIHLWSIESDP-K---LVSRYKGHKRARFVI 490 (532)
Q Consensus 419 ~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~--~~l~~~~~dg~i~iwd~~~~~-~---~~~~~~~~~~~~~~i 490 (532)
|+.|..|++||.++.. .......+.|..+.++|.- +.|+++- -+-.+|-++..+. + ....++.|..-.+.
T Consensus 229 GsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CM-h~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG- 306 (339)
T KOG0280|consen 229 GSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACM-HNGAKILDSSDKVLEFQIVLPSDKIHDSLCYG- 306 (339)
T ss_pred eccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHH-hcCceEEEecccccchheeeeccccccceeec-
Confidence 9999999999999655 2222345789999999953 3344444 4446777776542 2 22334455543222
Q ss_pred EEccCCCCCcEEEEEe-CCCcEE-EEeCCCCCc
Q 009569 491 RSCFGGFEQAFIASGS-EDSQVN-IFLSFSPFA 521 (532)
Q Consensus 491 ~~~~~s~d~~~l~sgs-~dg~i~-iw~~~~~~~ 521 (532)
..| .....+|+|++ .|..++ +|-.-++..
T Consensus 307 -~DW-d~~~~~lATCsFYDk~~~~~Wl~~t~~~ 337 (339)
T KOG0280|consen 307 -GDW-DSKDSFLATCSFYDKKIRQLWLHITGEP 337 (339)
T ss_pred -ccc-ccccceeeeeeccccceeeeeeeccCCc
Confidence 223 22345688865 477755 887666543
No 254
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.30 E-value=5.6e-09 Score=116.65 Aligned_cols=237 Identities=11% Similarity=0.116 Sum_probs=157.9
Q ss_pred EEEEcc-CCCEEEEEeCCCeEEEEEeecCCeeEEEEEeec--------------CCCCeEEEEeCCCCCEEEEeeC-CCc
Q 009569 277 FLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG--------------HRKPVFTVSWSPNDHQLLTCGQ-EEA 340 (532)
Q Consensus 277 ~v~~s~-~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~--------------h~~~v~~l~~s~~~~~l~s~~~-dg~ 340 (532)
.+++++ ++.++++-+.++.|.+||.. +.. ...+.+ +-.....+++.++++.|+++.. ++.
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~---i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNF---IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA 647 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCC-CCE---EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence 578887 46677777788899999976 322 111111 1123578899998887666554 568
Q ss_pred EEEEECCCCcEEEEeecc-----------------CCceEEEEEee-CCCeEEEEeCCCcEEEEECCCCeEEEeecC---
Q 009569 341 IRRWDVNSGECLHVYEKT-----------------GVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQ--- 399 (532)
Q Consensus 341 i~iwd~~~~~~~~~~~~~-----------------~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--- 399 (532)
|+++|..++. +.++.+. -.....++++| ++..+++.+.++.|++||..++.+..+...
T Consensus 648 Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~ 726 (1057)
T PLN02919 648 LREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE 726 (1057)
T ss_pred EEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence 9999987764 3333211 11346789999 556666667788999999987665443221
Q ss_pred -----------ccCceEEEEEeeCCCEEE-EEECCCeEEEEECCCCceeeeec-----------------------CCce
Q 009569 400 -----------KTLRISDMAITDDGKRII-SICREAAILLLDREANFERWIEE-----------------------EEVI 444 (532)
Q Consensus 400 -----------~~~~v~~~~~s~~~~~l~-~~~~dg~I~iwd~~~~~~~~~~~-----------------------~~~i 444 (532)
.......++++|+++.|+ +-+.++.|++||+.++....... -...
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 012456799999998555 44567899999998765221110 1124
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccc------------eEEEEEccCCCCCcEEEEEeCCCcEE
Q 009569 445 TSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRA------------RFVIRSCFGGFEQAFIASGSEDSQVN 512 (532)
Q Consensus 445 ~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~------------~~~i~~~~~s~d~~~l~sgs~dg~i~ 512 (532)
.+++++++|+.+++...++.|++||..++ . +.++.+.... .....+++ +++|+++++-+.++.|+
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg-~-v~tiaG~G~~G~~dG~~~~a~l~~P~GIav-d~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATK-R-VTTLAGTGKAGFKDGKALKAQLSEPAGLAL-GENGRLFVADTNNSLIR 883 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCC-e-EEEEeccCCcCCCCCcccccccCCceEEEE-eCCCCEEEEECCCCEEE
Confidence 68999999998888888999999999876 3 3333321100 01123444 78999888888999999
Q ss_pred EEeCCCCCc
Q 009569 513 IFLSFSPFA 521 (532)
Q Consensus 513 iw~~~~~~~ 521 (532)
+||+.++..
T Consensus 884 vid~~~~~~ 892 (1057)
T PLN02919 884 YLDLNKGEA 892 (1057)
T ss_pred EEECCCCcc
Confidence 999998765
No 255
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=1.1e-10 Score=116.28 Aligned_cols=231 Identities=19% Similarity=0.307 Sum_probs=173.6
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEEeecCC------------eeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCC
Q 009569 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG------------QVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE 339 (532)
Q Consensus 272 ~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~------------~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 339 (532)
.....|+.|+....|+|.|+.||.++|..+.+.. .+..-+++.+|+..|..+.|+.+.+.|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 3457799999999999999999999999886532 1234467889999999999999999999999999
Q ss_pred cEEEEECCCCcEEEEee--ccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEE
Q 009569 340 AIRRWDVNSGECLHVYE--KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRII 417 (532)
Q Consensus 340 ~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 417 (532)
.|.+|-+-.|.....+. .....|.+++|+.||..+.....||.|.+=.++++.+-...-.. .....+.|++|.+.++
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg-~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG-QLLAHVLWSEDLEQAL 172 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch-heccceeecccHHHHH
Confidence 99999998776543332 23567899999999999999999999998888876553222111 1456789999999999
Q ss_pred EEECCCeEEEEECCCCc-ee------------eeecCCceeEEEEc--------CCCCEEEEEecCCeEEEEecCCCCcc
Q 009569 418 SICREAAILLLDREANF-ER------------WIEEEEVITSFSLS--------KDNKYLLVNLINQEIHLWSIESDPKL 476 (532)
Q Consensus 418 ~~~~dg~I~iwd~~~~~-~~------------~~~~~~~i~~~~~s--------p~~~~l~~~~~dg~i~iwd~~~~~~~ 476 (532)
.+-.+|.+++||....- .+ +......|..+.|. ||...++++..+|.+.|..-.+...+
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 98899999999987643 00 01112235566653 47789999999999998876665444
Q ss_pred eeEEeccccceEEEEEccCCCCCcEEEEEeCC
Q 009569 477 VSRYKGHKRARFVIRSCFGGFEQAFIASGSED 508 (532)
Q Consensus 477 ~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~d 508 (532)
+-.-.+ ..++...| +++|.+|+.++.|
T Consensus 253 vv~dtg----m~~vgakW-nh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 253 VVVDTG----MKIVGAKW-NHNGAVLAVCGND 279 (1189)
T ss_pred eEEecc----cEeeccee-cCCCcEEEEccCc
Confidence 433232 33455666 9999999988764
No 256
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.26 E-value=1.7e-10 Score=120.04 Aligned_cols=194 Identities=11% Similarity=0.115 Sum_probs=151.2
Q ss_pred eEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCc----eEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEE
Q 009569 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVG----LISCGWFLDGGGIFAGMTDKSICLWDLDGRELES 395 (532)
Q Consensus 320 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 395 (532)
|....+.-+...++.++.+..+.+||...+............ ..-+.++++.-++++|+.-+.|.+|+........
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~ 169 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI 169 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc
Confidence 333455557788899999999999999877766655433221 1122345566688999999999999987433333
Q ss_pred eecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc---eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCC
Q 009569 396 WKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (532)
Q Consensus 396 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~ 472 (532)
....|.+.|-++.++-||.++++.+.|.++++|++.+.+ ....+|...+..++|+|+ .+++++.|.+.++|+...
T Consensus 170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~ 247 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG 247 (967)
T ss_pred eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccc
Confidence 455666799999999999999999999999999999988 467899999999999998 899999999999997655
Q ss_pred CCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC
Q 009569 473 DPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSP 519 (532)
Q Consensus 473 ~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~ 519 (532)
..+..|.+|.... +-++.. +++...++|++.||.+++|++...
T Consensus 248 --~~l~~y~~h~g~~-iw~~~~-~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 248 --TQLEVYDEHSGKG-IWKIAV-PIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred --ceehhhhhhhhcc-eeEEEE-cCCceEEEeeccCcchhhhhhhcc
Confidence 4556888886531 122333 778889999999999999998763
No 257
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.25 E-value=4.7e-11 Score=129.79 Aligned_cols=199 Identities=14% Similarity=0.210 Sum_probs=157.5
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECC
Q 009569 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN 347 (532)
Q Consensus 268 l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 347 (532)
++.|-..|.++.-+|...+-+||+.||.|++|....+.++.+..+ .+. ..|+.+.|+.+|+.+..+..||.+.+|.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt-~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT-AGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec-cCc-chhhhhhhcccCCceeeeccCCceeecccC
Confidence 334557788888899999999999999999999987766544443 333 889999999999999999999999999986
Q ss_pred CCcEEEEeeccCCceEEEEEeeCCCeEEEEe---CCCcEEEEECCC-CeEEEeecCccCceEEEEEeeCCCEEEEEECCC
Q 009569 348 SGECLHVYEKTGVGLISCGWFLDGGGIFAGM---TDKSICLWDLDG-RELESWKGQKTLRISDMAITDDGKRIISICREA 423 (532)
Q Consensus 348 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 423 (532)
.+.....+.|......+.|.. ..+++++ .++.+.+||.-- .........|.+.++++++-|....+++|+.+|
T Consensus 2282 -pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred -CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcC
Confidence 666777888988888888875 5666654 567899999742 111112245556899999999999999999999
Q ss_pred eEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEec
Q 009569 424 AILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG 482 (532)
Q Consensus 424 ~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 482 (532)
.|++||++..+ ..+.. ++ ...++++|+..|.|+||++... .+++++..
T Consensus 2359 ~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~-~ll~~~p~ 2408 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF-GLLHTFPS 2408 (2439)
T ss_pred cEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc-chhhcCch
Confidence 99999998876 22211 44 5779999999999999999887 67777654
No 258
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.25 E-value=9.1e-10 Score=108.27 Aligned_cols=189 Identities=16% Similarity=0.287 Sum_probs=147.1
Q ss_pred CCCCEEEEeeCCCcEEEEECCCCcEEEEeecc---CCceEEEEEe--------------------eCCCeEEEEeCCCcE
Q 009569 327 PNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT---GVGLISCGWF--------------------LDGGGIFAGMTDKSI 383 (532)
Q Consensus 327 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~i~~~~~~--------------------~~~~~l~~~~~dg~i 383 (532)
|...++|....||.+++||+..++....|... .+..++..|. .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 44678999999999999999998877666532 3445555552 133457788899999
Q ss_pred EEEECCCCeEEEee--cCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEE
Q 009569 384 CLWDLDGRELESWK--GQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVN 459 (532)
Q Consensus 384 ~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~ 459 (532)
.+|+..++++.... ..|.+.|.++.++.+-..|.+++.|+.+..|+..... ..+......+.+++.+||++.++++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 99999988876554 4566789999999999999999999999999999888 5556677789999999999999988
Q ss_pred ecCCeEEEEecCCCCcceeEEeccccceEEEEEccC--CCCCcEEEEE-eCCCcEEEEeCCC
Q 009569 460 LINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG--GFEQAFIASG-SEDSQVNIFLSFS 518 (532)
Q Consensus 460 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~--s~d~~~l~sg-s~dg~i~iw~~~~ 518 (532)
+ ++|++||+.+. +.+.+|.||..++..+.+... ...|.++.++ ..+.-+.+|-+..
T Consensus 163 s--~~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 163 S--RQIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred c--ceEEEEEccCc-eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 6 68999999998 999999999998766544331 1125565544 4455678887765
No 259
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=7e-11 Score=128.50 Aligned_cols=208 Identities=13% Similarity=0.200 Sum_probs=165.0
Q ss_pred EeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeecc-CCceEEEEEe
Q 009569 290 SSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT-GVGLISCGWF 368 (532)
Q Consensus 290 ~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~ 368 (532)
...++...-|..+.++ ..+..+-..|.++.-+|...+.+||+.||.|++|....++.+..++.. ...++.+.|+
T Consensus 2186 ~n~~~~~~tq~~~~~~-----~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~ 2260 (2439)
T KOG1064|consen 2186 SNLPWLGSTQTSRGAS-----VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFN 2260 (2439)
T ss_pred ccCCccccceecccce-----eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhc
Confidence 3344444555544221 223345567888888898899999999999999999999888777633 4788999999
Q ss_pred eCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEE---CCCeEEEEECCCCc---eeeeecCC
Q 009569 369 LDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC---REAAILLLDREANF---ERWIEEEE 442 (532)
Q Consensus 369 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~I~iwd~~~~~---~~~~~~~~ 442 (532)
.+|+.+.++..||.+.+|....+....+..+.. ..+++.|-. ..+++++ .++.+.+||.--.. .....|.+
T Consensus 2261 ~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk-~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~ 2337 (2439)
T KOG1064|consen 2261 HQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNK-ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDG 2337 (2439)
T ss_pred ccCCceeeeccCCceeecccCCcceeccccCCc-cccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCC
Confidence 999999999999999999999777777777665 677777765 4566654 56889999975433 33378999
Q ss_pred ceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC
Q 009569 443 VITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSP 519 (532)
Q Consensus 443 ~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~ 519 (532)
.++++++-|..+.|++|+.+|.|++||++.. +++++++. . . ...++++|+..|.|+||++...
T Consensus 2338 gaT~l~~~P~~qllisggr~G~v~l~D~rqr-ql~h~~~~-----------~-~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2338 GATVLAYAPKHQLLISGGRKGEVCLFDIRQR-QLRHTFQA-----------L-D-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred CceEEEEcCcceEEEecCCcCcEEEeehHHH-HHHHHhhh-----------h-h-hhheeeccCcccceEEEEcccc
Confidence 9999999999999999999999999999987 77777765 1 3 4568899999999999999874
No 260
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.24 E-value=6.9e-09 Score=99.31 Aligned_cols=146 Identities=14% Similarity=0.178 Sum_probs=122.7
Q ss_pred cccccEEEEEEccCCCEEEEEeCCC-eEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 009569 270 AHSDEVWFLQFSHDGKYLASSSKDQ-SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS 348 (532)
Q Consensus 270 ~h~~~V~~v~~s~~g~~las~s~dg-~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 348 (532)
+|.+.|.-..+.-+++-++.|..|| .+-|+|..++ ....+...-+.|.++..+++|++++.+.....|.+.|+++
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~----e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn 432 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG----EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN 432 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc----eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC
Confidence 5778899999999999999999999 8999999865 3345566778899999999999999999999999999999
Q ss_pred CcEEEEeeccCCceEEEEEeeCCCeEEEEeCCC----cEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEE
Q 009569 349 GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDK----SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC 420 (532)
Q Consensus 349 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 420 (532)
|.....-+...+-|+.+.|+|++++++-+--+| .|+++|+.++++........ .-.+-+|.||+++|..-+
T Consensus 433 gnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta-~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 433 GNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTA-YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcc-cccCcccCCCCcEEEEEe
Confidence 987666666678899999999999999887665 69999999988877665544 456678999999876654
No 261
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.23 E-value=2.3e-08 Score=93.29 Aligned_cols=235 Identities=11% Similarity=0.157 Sum_probs=154.4
Q ss_pred CCeEEEEEeecC-CeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCC---CcEEEEECCC--CcEEE--EeeccCCceEE
Q 009569 293 DQSAIIWEVKED-GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE---EAIRRWDVNS--GECLH--VYEKTGVGLIS 364 (532)
Q Consensus 293 dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~--~~~~~--~~~~~~~~i~~ 364 (532)
+.-|++|++.+. +.+.. ..+-.+....+-++|+|+.+.|.++..+ |.|..|.++. |+... .......+.+.
T Consensus 15 s~gI~v~~ld~~~g~l~~-~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSL-LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccch-hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 567999999843 33322 2234566778999999999999998665 6677777754 54322 22223445588
Q ss_pred EEEeeCCCeEEEEe-CCCcEEEEECCC-CeEE---EeecCc---------cCceEEEEEeeCCCEEEEEE-CCCeEEEEE
Q 009569 365 CGWFLDGGGIFAGM-TDKSICLWDLDG-RELE---SWKGQK---------TLRISDMAITDDGKRIISIC-REAAILLLD 429 (532)
Q Consensus 365 ~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~---~~~~~~---------~~~v~~~~~s~~~~~l~~~~-~dg~I~iwd 429 (532)
+++++++++++++. ..|.|.++-++. +.+. ....+. ...+....++|+++++++.+ .-..|.+|+
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 99999999999887 457899998853 2221 111111 11388899999999998877 445899999
Q ss_pred CCCCc-----eeeeecCCceeEEEEcCCCCEEEEEec-CCeEEEEecCCCCcceeEEecc-------ccceEEEEEccCC
Q 009569 430 REANF-----ERWIEEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDPKLVSRYKGH-------KRARFVIRSCFGG 496 (532)
Q Consensus 430 ~~~~~-----~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~i~~~~~s 496 (532)
+..+. ............|.|+|++++..+.++ +++|.+|........+..++.+ ......-.+.. +
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi-s 252 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI-S 252 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE-C
Confidence 98766 223345666889999999999887765 8899999987742233333222 11111222233 8
Q ss_pred CCCcEEEEEeC-CCcEEEEeCCC--CCceeeecccc
Q 009569 497 FEQAFIASGSE-DSQVNIFLSFS--PFAKKIKYTSM 529 (532)
Q Consensus 497 ~d~~~l~sgs~-dg~i~iw~~~~--~~~~~~~~~~~ 529 (532)
+||++|+++.. ...|.+|.+.. +++.-+.+.+.
T Consensus 253 ~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~t 288 (346)
T COG2706 253 PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPT 288 (346)
T ss_pred CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEecc
Confidence 99999987743 34677877754 44444444433
No 262
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=9.3e-09 Score=103.80 Aligned_cols=192 Identities=11% Similarity=0.084 Sum_probs=127.7
Q ss_pred cEEEEEEccCCCE-EEEEeC---CCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEee-CC--CcEEEEEC
Q 009569 274 EVWFLQFSHDGKY-LASSSK---DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QE--EAIRRWDV 346 (532)
Q Consensus 274 ~V~~v~~s~~g~~-las~s~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~d--g~i~iwd~ 346 (532)
.+....|+|||+. ++..+. +..|.++|+.++.. ..+ ....+......|+|||+.++... .+ ..|.++|+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-~~l---t~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-EKI---ASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-EEE---ecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 7788999999985 654443 35688888876532 222 23445566788999998776543 33 46888898
Q ss_pred CCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCC-C--cEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECC-
Q 009569 347 NSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD-K--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE- 422 (532)
Q Consensus 347 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d- 422 (532)
.+++.. .+..+........|+|||+.|+..+.. + .|+++|+.++.......... ....|+|||+.++..+..
T Consensus 265 ~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~---~~~~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 265 NTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK---NNSSVSTYKNYIVYSSRET 340 (419)
T ss_pred CCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC---cCceECCCCCEEEEEEcCC
Confidence 887644 343333333456799999988776632 3 68888998877655543321 134899999998877654
Q ss_pred --------CeEEEEECCCCceeeeecCCceeEEEEcCCCCEEEEEecCC---eEEEEecCCC
Q 009569 423 --------AAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQ---EIHLWSIESD 473 (532)
Q Consensus 423 --------g~I~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---~i~iwd~~~~ 473 (532)
..|.+.|+.++...............|+|||+.|+....++ .+.+.++...
T Consensus 341 ~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 341 NNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 36889999887733222233344689999999887765433 3666666543
No 263
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=3.5e-10 Score=110.40 Aligned_cols=183 Identities=13% Similarity=0.162 Sum_probs=142.4
Q ss_pred EEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeec------cC-
Q 009569 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEK------TG- 359 (532)
Q Consensus 287 las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~- 359 (532)
|..++....|+-++++.| ..+..+....+.++++..++...+|++|+.+|.|..||.++...+.++.. |.
T Consensus 148 ly~~gsg~evYRlNLEqG---rfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg 224 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQG---RFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPG 224 (703)
T ss_pred EEEeecCcceEEEEcccc---ccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCcc
Confidence 444444556777888766 44566666778999999999999999999999999999988776655542 22
Q ss_pred ----CceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecC-ccCceEEEEEeeC--CCEEEEEECCCeEEEEECCC
Q 009569 360 ----VGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ-KTLRISDMAITDD--GKRIISICREAAILLLDREA 432 (532)
Q Consensus 360 ----~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~--~~~l~~~~~dg~I~iwd~~~ 432 (532)
..|+++.|+.+|-.+++|+.+|.+.|||++.........+ ...+|..+.|.+. ++.+++ .....++|||-.+
T Consensus 225 ~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~ 303 (703)
T KOG2321|consen 225 GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECT 303 (703)
T ss_pred ccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cchHHhhhccccc
Confidence 2489999999999999999999999999997655444433 2348999999775 334444 4556899999999
Q ss_pred Cc-eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 009569 433 NF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (532)
Q Consensus 433 ~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~ 473 (532)
++ ...+.....++.+|+-|++-+++++..++.+..|=+...
T Consensus 304 Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 304 GKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred CCceeeccccCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 88 666677778999999999999999998888877766543
No 264
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.22 E-value=6.4e-08 Score=93.86 Aligned_cols=258 Identities=9% Similarity=0.039 Sum_probs=156.0
Q ss_pred CCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeC----------CCeEEEEEeecCCeeEEEEEee
Q 009569 245 SDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSK----------DQSAIIWEVKEDGQVSLKHRLS 314 (532)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~----------dg~i~iwd~~~~~~~~~~~~~~ 314 (532)
+.+++.+..+ .+.+..+..-..+- .+ +||||+.|+++.. +..|.+||..+... ...+.
T Consensus 27 ~~v~ViD~~~-------~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~---~~~i~ 94 (352)
T TIGR02658 27 TQVYTIDGEA-------GRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP---IADIE 94 (352)
T ss_pred ceEEEEECCC-------CEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE---EeEEc
Confidence 5666665443 34455554333322 24 9999998877655 78999999987643 33333
Q ss_pred cC-------CCCeEEEEeCCCCCEEEEeeC--CCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEE
Q 009569 315 GH-------RKPVFTVSWSPNDHQLLTCGQ--EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICL 385 (532)
Q Consensus 315 ~h-------~~~v~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 385 (532)
.. ......++++|||++|+.... +..|.+.|+.+++.+..+.-... ..-...+.+. . .+-+.||....
T Consensus 95 ~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~t~e~~-~-~~~~~Dg~~~~ 171 (352)
T TIGR02658 95 LPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFPTANDT-F-FMHCRDGSLAK 171 (352)
T ss_pred cCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEEecCCc-c-EEEeecCceEE
Confidence 21 122347899999999987763 68999999999999887764321 1112222122 2 22334555444
Q ss_pred EECCC-CeEE--E--eecCccCce-EEEEEee-CCCEEEEEECCCeEEEEECCCCc------eeeee--------cCCce
Q 009569 386 WDLDG-RELE--S--WKGQKTLRI-SDMAITD-DGKRIISICREAAILLLDREANF------ERWIE--------EEEVI 444 (532)
Q Consensus 386 wd~~~-~~~~--~--~~~~~~~~v-~~~~~s~-~~~~l~~~~~dg~I~iwd~~~~~------~~~~~--------~~~~i 444 (532)
..+.. ++.. . ........+ ..-.|.+ +|+++++... |.|.+.|+.... ..... ....+
T Consensus 172 v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~ 250 (352)
T TIGR02658 172 VGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW 250 (352)
T ss_pred EEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcc
Confidence 33321 1111 0 000100000 0014456 7777776555 999999975543 11111 12234
Q ss_pred eEEEEcCCCCEEEEEe----------cCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCc-EEEEEe-CCCcEE
Q 009569 445 TSFSLSKDNKYLLVNL----------INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA-FIASGS-EDSQVN 512 (532)
Q Consensus 445 ~~~~~sp~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~-~l~sgs-~dg~i~ 512 (532)
.-++++|+++.+++.. ..+.|.++|..+. +.+..+...... ..+.+ ++|++ +|++.. .++.|.
T Consensus 251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~-kvi~~i~vG~~~---~~iav-S~Dgkp~lyvtn~~s~~Vs 325 (352)
T TIGR02658 251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG-KRLRKIELGHEI---DSINV-SQDAKPLLYALSTGDKTLY 325 (352)
T ss_pred eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC-eEEEEEeCCCce---eeEEE-CCCCCeEEEEeCCCCCcEE
Confidence 4599999999988843 1247999999998 777777643332 34555 99999 887666 578899
Q ss_pred EEeCCCCCcee
Q 009569 513 IFLSFSPFAKK 523 (532)
Q Consensus 513 iw~~~~~~~~~ 523 (532)
++|..+++...
T Consensus 326 ViD~~t~k~i~ 336 (352)
T TIGR02658 326 IFDAETGKELS 336 (352)
T ss_pred EEECcCCeEEe
Confidence 99999976443
No 265
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=3e-09 Score=103.93 Aligned_cols=199 Identities=14% Similarity=0.178 Sum_probs=138.7
Q ss_pred ccccEEEEEEccCC--CEEEE-----EeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCE-EEEe--eCC--
Q 009569 271 HSDEVWFLQFSHDG--KYLAS-----SSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQ-LLTC--GQE-- 338 (532)
Q Consensus 271 h~~~V~~v~~s~~g--~~las-----~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~-l~s~--~~d-- 338 (532)
|...|+...+||.+ ..+|+ .+.-+.|+||.....+....+..-.-....=..+.|++-|.- |+.+ .-|
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 67889999999964 34554 355678999988743322221111111222346788887652 2222 223
Q ss_pred -------CcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEE--EeCCCcEEEEECCCCeEEEeecCccCceEEEEE
Q 009569 339 -------EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFA--GMTDKSICLWDLDGRELESWKGQKTLRISDMAI 409 (532)
Q Consensus 339 -------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 409 (532)
.++++.++....+...+. ..++|.++.|+|+++.+++ |..-..+.|||+++..+..+..+ +-+++-|
T Consensus 244 n~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~eg---pRN~~~f 319 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEG---PRNTAFF 319 (566)
T ss_pred CccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCC---CccceEE
Confidence 268888888444444443 5789999999999988776 44567899999999887766554 5688999
Q ss_pred eeCCCEEEEEECC---CeEEEEECCCCceeeeecCCceeEEEEcCCCCEEEEEec------CCeEEEEecCCC
Q 009569 410 TDDGKRIISICRE---AAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLI------NQEIHLWSIESD 473 (532)
Q Consensus 410 s~~~~~l~~~~~d---g~I~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~------dg~i~iwd~~~~ 473 (532)
+|.|++++.++.+ |.+-+||+.+.+......-..-+-+.|+|||.++++++. |+.++||+....
T Consensus 320 np~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 320 NPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred CCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 9999999988854 789999999866332233344566899999999999875 688999998654
No 266
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.20 E-value=1.1e-08 Score=97.96 Aligned_cols=216 Identities=16% Similarity=0.244 Sum_probs=153.1
Q ss_pred ccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecC--------CCCeEEEE-eCC-CCCEEEEeeCCCcEEEEECCCCc
Q 009569 281 SHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH--------RKPVFTVS-WSP-NDHQLLTCGQEEAIRRWDVNSGE 350 (532)
Q Consensus 281 s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h--------~~~v~~l~-~s~-~~~~l~s~~~dg~i~iwd~~~~~ 350 (532)
+.||+.++.. ..|.|.+||..+..-.+.-..+.-. ..+...+. |++ +|.+++..|. |...|.+...+-
T Consensus 275 nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~ 352 (668)
T COG4946 275 NSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY 352 (668)
T ss_pred CCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe
Confidence 4467776653 4578999998865321111111111 11111122 443 6788888775 567777766555
Q ss_pred EEEEeeccCCceEEEEEeeCCCeEEEEeCCC-cEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEE
Q 009569 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMTDK-SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429 (532)
Q Consensus 351 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd 429 (532)
.++. ++.+.|.-..+..+++-++.|..|| .+-++|.++++.......-. .|.++..+|+|+.++++.....|.++|
T Consensus 353 ~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg-~I~av~vs~dGK~~vvaNdr~el~vid 429 (668)
T COG4946 353 SIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLG-NIEAVKVSPDGKKVVVANDRFELWVID 429 (668)
T ss_pred eEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCcc-ceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence 4433 4566688778888888999999999 89999999999888877665 899999999999999999999999999
Q ss_pred CCCCceeee--ecCCceeEEEEcCCCCEEEEEecCC----eEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEE
Q 009569 430 REANFERWI--EEEEVITSFSLSKDNKYLLVNLINQ----EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIA 503 (532)
Q Consensus 430 ~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~ 503 (532)
+.++..+.+ ...+-|+.+.|||++++++-+--+| .|+++|+.++ +....-. ... +-...+| .||+++|+
T Consensus 430 idngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~-Kiy~vTT-~ta--~DfsPaF-D~d~ryLY 504 (668)
T COG4946 430 IDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG-KIYDVTT-PTA--YDFSPAF-DPDGRYLY 504 (668)
T ss_pred ecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC-eEEEecC-Ccc--cccCccc-CCCCcEEE
Confidence 999985444 4456799999999999999887665 6999999987 4433222 222 1244566 99999887
Q ss_pred EEe
Q 009569 504 SGS 506 (532)
Q Consensus 504 sgs 506 (532)
--+
T Consensus 505 fLs 507 (668)
T COG4946 505 FLS 507 (668)
T ss_pred EEe
Confidence 654
No 267
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.20 E-value=2.5e-09 Score=98.43 Aligned_cols=236 Identities=13% Similarity=0.209 Sum_probs=165.9
Q ss_pred HHHhcccccccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecC-Cee
Q 009569 229 ALDVQRDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED-GQV 307 (532)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~-~~~ 307 (532)
++.......+++.+.+..+++|-....+.. .|. +...-..+++++.++++...|+.|-.+|++.-+.+... ++.
T Consensus 30 ~~l~~~e~gv~~~s~drtvrv~lkrds~q~-wps----I~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm 104 (404)
T KOG1409|consen 30 AILIPKEEGVISVSEDRTVRVWLKRDSGQY-WPS----IYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKM 104 (404)
T ss_pred heeccCCCCeEEccccceeeeEEecccccc-Cch----hhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhc
Confidence 333445556777777878888754332111 111 11123467899999999999999999999988877632 222
Q ss_pred EEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEE
Q 009569 308 SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387 (532)
Q Consensus 308 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 387 (532)
...+....|...|..+-|+-..+.+++++.|..+.---.+.+..+..+... ...+++.+.-. +.+.|...|.|.+..
T Consensus 105 ~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-~~~t~~~~d~~--~~fvGd~~gqvt~lr 181 (404)
T KOG1409|consen 105 TFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE-TPASALQFDAL--YAFVGDHSGQITMLK 181 (404)
T ss_pred chhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee-ccCCCCceeeE--EEEecccccceEEEE
Confidence 345666789999999999999999999999987754444555544332211 11111222111 555666677666655
Q ss_pred CC--CCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc---eeeeecCCceeEEEEcCCCCEEEEEecC
Q 009569 388 LD--GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLIN 462 (532)
Q Consensus 388 ~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~d 462 (532)
+. .-.+......+.+.+.+++|.|....++++..|..+.+||+.... ....+|...|..+..-+.-+.+.+++.|
T Consensus 182 ~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~ed 261 (404)
T KOG1409|consen 182 LEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGED 261 (404)
T ss_pred EeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCC
Confidence 43 333444455566699999999999999999999999999997766 5667888899999888888999999999
Q ss_pred CeEEEEecCC
Q 009569 463 QEIHLWSIES 472 (532)
Q Consensus 463 g~i~iwd~~~ 472 (532)
|.|.+|++..
T Consensus 262 g~i~~w~mn~ 271 (404)
T KOG1409|consen 262 GGIVVWNMNV 271 (404)
T ss_pred CeEEEEeccc
Confidence 9999999864
No 268
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=3.5e-09 Score=103.16 Aligned_cols=233 Identities=18% Similarity=0.253 Sum_probs=151.4
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCC-----------CcEE
Q 009569 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-----------EAIR 342 (532)
Q Consensus 274 ~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-----------g~i~ 342 (532)
.-+-+.|||.|.||+|--.-| |.+|--. .+..++.+ .|.+ |..+.|||+.+||+|-+.. ..++
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~---~f~r~~RF-~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~ 285 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGE---SFDRIQRF-YHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLI 285 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCc---cHHHHHhc-cCCC-ceeeecCCccceEEEecCCccccCcccCCCceEE
Confidence 346789999999999987655 6889533 23333443 3544 8899999999999996531 4799
Q ss_pred EEECCCCcEEEEeecc--CCce-EEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEE
Q 009569 343 RWDVNSGECLHVYEKT--GVGL-ISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISI 419 (532)
Q Consensus 343 iwd~~~~~~~~~~~~~--~~~i-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 419 (532)
|||+.+|...+.|... ...+ .-..|+.|+++++.-.. ..|.||+...-.+.......-..|....|+|.++.||.-
T Consensus 286 IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYw 364 (698)
T KOG2314|consen 286 IWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYW 364 (698)
T ss_pred EEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEE
Confidence 9999999988888752 2222 24679999999887655 568899887654444444444467777888877766543
Q ss_pred ECC----------------CeE---EEEE--------------------------------------CCCCc--eeeeec
Q 009569 420 CRE----------------AAI---LLLD--------------------------------------REANF--ERWIEE 440 (532)
Q Consensus 420 ~~d----------------g~I---~iwd--------------------------------------~~~~~--~~~~~~ 440 (532)
+.. ..| .+++ ++... ......
T Consensus 365 tpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel 444 (698)
T KOG2314|consen 365 TPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL 444 (698)
T ss_pred cccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec
Confidence 211 001 1111 11111 111223
Q ss_pred CCceeEEEEcCCCCEEEEEec---CCeEEEEecCCC---CcceeEEeccccceEEEEEccCCCCCcEEEEE---eCCCcE
Q 009569 441 EEVITSFSLSKDNKYLLVNLI---NQEIHLWSIESD---PKLVSRYKGHKRARFVIRSCFGGFEQAFIASG---SEDSQV 511 (532)
Q Consensus 441 ~~~i~~~~~sp~~~~l~~~~~---dg~i~iwd~~~~---~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sg---s~dg~i 511 (532)
...|...+|-|.|..+++-+. ..++.+|.+.+. ..++..+... ... ..|++|.|++++.+ |..|.+
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~----~~N-~vfwsPkG~fvvva~l~s~~g~l 519 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKK----FAN-TVFWSPKGRFVVVAALVSRRGDL 519 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhccc----ccc-eEEEcCCCcEEEEEEecccccce
Confidence 456788999999987766543 346888888743 2344444431 122 34449999999876 457889
Q ss_pred EEEeCCC
Q 009569 512 NIFLSFS 518 (532)
Q Consensus 512 ~iw~~~~ 518 (532)
.++|...
T Consensus 520 ~F~D~~~ 526 (698)
T KOG2314|consen 520 EFYDTDY 526 (698)
T ss_pred EEEecch
Confidence 9999885
No 269
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.18 E-value=1.7e-09 Score=99.47 Aligned_cols=234 Identities=15% Similarity=0.247 Sum_probs=157.7
Q ss_pred ccccccCCCCCceeeccCCccCCCCCcceeEEccccc------------ccEEEEEEccCCC--EEEEEeCCCeEEEEEe
Q 009569 236 SCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHS------------DEVWFLQFSHDGK--YLASSSKDQSAIIWEV 301 (532)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~------------~~V~~v~~s~~g~--~las~s~dg~i~iwd~ 301 (532)
..+.++..++.+.+|.+...... .......++.|. ..|..+.|.++++ .+...+.|.+|++|.+
T Consensus 38 e~LatGdkgGRVv~f~r~~~~~~--ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi 115 (433)
T KOG1354|consen 38 ERLATGDKGGRVVLFEREKLYKG--EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKI 115 (433)
T ss_pred ceEeecCCCCeEEEeeccccccc--ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeee
Confidence 34567788888999887654331 122333444444 4588899999664 5666778999999998
Q ss_pred ecCCeeE--------------------------------EEEE-eecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 009569 302 KEDGQVS--------------------------------LKHR-LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS 348 (532)
Q Consensus 302 ~~~~~~~--------------------------------~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 348 (532)
...+... +.+. -..|+--|.+++++.|...++++ .|=.|.+|+++-
T Consensus 116 ~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei 194 (433)
T KOG1354|consen 116 RERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWNLEI 194 (433)
T ss_pred eccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cceeeeeccccc
Confidence 6421100 1111 13577789999999999988885 466899999863
Q ss_pred Cc-EEE--Eeec-----cCCceEEEEEee-CCCeEEEEeCCCcEEEEECCCCeE-------E---------EeecCccCc
Q 009569 349 GE-CLH--VYEK-----TGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGREL-------E---------SWKGQKTLR 403 (532)
Q Consensus 349 ~~-~~~--~~~~-----~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~-------~---------~~~~~~~~~ 403 (532)
-. +.. -++. -..-|++..|+| ..+.++-.+..|+|++.|++...+ . .+...--..
T Consensus 195 ~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsS 274 (433)
T KOG1354|consen 195 IDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISS 274 (433)
T ss_pred cCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhh
Confidence 32 211 1222 245688899999 567788888999999999984221 1 111111236
Q ss_pred eEEEEEeeCCCEEEEEECCCeEEEEECCCCc---eeeeecC------------Cc---eeEEEEcCCCCEEEEEecCCeE
Q 009569 404 ISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEE------------EV---ITSFSLSKDNKYLLVNLINQEI 465 (532)
Q Consensus 404 v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~---~~~~~~~------------~~---i~~~~~sp~~~~l~~~~~dg~i 465 (532)
|.++.|+++|+++++-+. -+|++||+.... .++.-|. .. -..++|+-++.++++|+-.+.+
T Consensus 275 ISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~f 353 (433)
T KOG1354|consen 275 ISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVF 353 (433)
T ss_pred hhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceE
Confidence 899999999999998544 489999995433 2222221 11 2468899999999999999999
Q ss_pred EEEecCCC
Q 009569 466 HLWSIESD 473 (532)
Q Consensus 466 ~iwd~~~~ 473 (532)
++++...+
T Consensus 354 rvf~~~~g 361 (433)
T KOG1354|consen 354 RVFNLARG 361 (433)
T ss_pred EEecCCCC
Confidence 99996544
No 270
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.18 E-value=9.4e-09 Score=91.60 Aligned_cols=248 Identities=9% Similarity=0.023 Sum_probs=160.1
Q ss_pred EEEEcc-----CCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEe-CCCCCEEEEeeCCCcEEEEECCCCc
Q 009569 277 FLQFSH-----DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSW-SPNDHQLLTCGQEEAIRRWDVNSGE 350 (532)
Q Consensus 277 ~v~~s~-----~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~-s~~~~~l~s~~~dg~i~iwd~~~~~ 350 (532)
.+.|.| .-.+||.|+..|...+|...+... .......|...|.-+.= ......+..++.|.++++.+++-+.
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~--h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s 149 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDG--HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDS 149 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCccc--ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCc
Confidence 455555 345899999999999999986432 22223334443322211 1122356677889999999887554
Q ss_pred EEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCC--CeEEE-eecCccCceEEEEEeeCCCEEEEEECCCeEEE
Q 009569 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG--RELES-WKGQKTLRISDMAITDDGKRIISICREAAILL 427 (532)
Q Consensus 351 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~i 427 (532)
.........-.+.++.+++|+++.++.+....|..|.++. ..+.. ........--+..|+.....+|+++.||++.|
T Consensus 150 ~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I 229 (344)
T KOG4532|consen 150 NKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAI 229 (344)
T ss_pred ccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEE
Confidence 3333322223478999999999999999999999999864 22222 22333335567789999999999999999999
Q ss_pred EECCCCc-------eeeeecCCceeEEEEcCCC--CEEEEEecCCeEEEEecCCCCcceeEEeccccc------eEEEEE
Q 009569 428 LDREANF-------ERWIEEEEVITSFSLSKDN--KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRA------RFVIRS 492 (532)
Q Consensus 428 wd~~~~~-------~~~~~~~~~i~~~~~sp~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~i~~ 492 (532)
||++... .....|.+.+..+.|++-| .+|+..-.-+.+.+.|+++. .-.+.+...... ..+...
T Consensus 230 ~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~-~~~q~I~i~~d~~~~~~tq~ifgt 308 (344)
T KOG4532|consen 230 YDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY-VNHQVIVIPDDVERKHNTQHIFGT 308 (344)
T ss_pred EEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC-ceeeEEecCccccccccccccccc
Confidence 9998764 2334588999999999866 45555555678999999987 444333222111 112335
Q ss_pred ccCCCCCcEEEEEeCCCcEEEEeCCCCCceeeeccccCC
Q 009569 493 CFGGFEQAFIASGSEDSQVNIFLSFSPFAKKIKYTSMKG 531 (532)
Q Consensus 493 ~~~s~d~~~l~sgs~dg~i~iw~~~~~~~~~~~~~~~~~ 531 (532)
+| +.++.-+.+.+++ .++=|++.+ ..++.+.++++
T Consensus 309 ~f-~~~n~s~~v~~e~-~~ae~ni~s--rsR~~fps~~~ 343 (344)
T KOG4532|consen 309 NF-NNENESNDVKNEL-QGAEYNILS--RSRFSFPSMPN 343 (344)
T ss_pred cc-cCCCcccccccch-hhheeeccc--cceeccCCCCC
Confidence 55 5555555555443 345565554 45666666654
No 271
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.17 E-value=1.1e-09 Score=99.43 Aligned_cols=245 Identities=18% Similarity=0.315 Sum_probs=169.1
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCC--eeEEEEEeecCCC------------CeEEEEeCCCC--CEEEE
Q 009569 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG--QVSLKHRLSGHRK------------PVFTVSWSPND--HQLLT 334 (532)
Q Consensus 271 h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~h~~------------~v~~l~~s~~~--~~l~s 334 (532)
..+.|+++.|...|.||++|...|.|.+|.-.... ..+....+++|.. .|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34679999999999999999999999999865321 1233444666643 47778887754 35666
Q ss_pred eeCCCcEEEEECCCCcE------------------------------------------EEEe-eccCCceEEEEEeeCC
Q 009569 335 CGQEEAIRRWDVNSGEC------------------------------------------LHVY-EKTGVGLISCGWFLDG 371 (532)
Q Consensus 335 ~~~dg~i~iwd~~~~~~------------------------------------------~~~~-~~~~~~i~~~~~~~~~ 371 (532)
.+.|.+|++|.+..... .+.+ ..|...+.++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 68899999998853210 0011 2456678889998887
Q ss_pred CeEEEEeCCCcEEEEECCC----CeEEEeecCcc----CceEEEEEeeC-CCEEEEEECCCeEEEEECCCCc-----eee
Q 009569 372 GGIFAGMTDKSICLWDLDG----RELESWKGQKT----LRISDMAITDD-GKRIISICREAAILLLDREANF-----ERW 437 (532)
Q Consensus 372 ~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~----~~v~~~~~s~~-~~~l~~~~~dg~I~iwd~~~~~-----~~~ 437 (532)
..++++ .|=.|.+|+++- -.+....++.. .-|++..|+|. ...+.-.+..|.|++-|++... ..+
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 777665 467899999862 23334443332 25788889995 4466677889999999998432 111
Q ss_pred -------------eecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEecccc------------ceE-EEE
Q 009569 438 -------------IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR------------ARF-VIR 491 (532)
Q Consensus 438 -------------~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------------~~~-~i~ 491 (532)
..-...|..+.|+++|+|+++-+ --+++|||++....++.++.-|.. .++ -..
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 11235678899999999999876 468999999988788888865532 111 133
Q ss_pred EccCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 492 SCFGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 492 ~~~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
+.| +-|.+.+++|+..+..-|+-+.+
T Consensus 343 isf-Sgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 343 ISF-SGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred EEe-cCCcccccccccccceeeecccc
Confidence 455 77888889998888877776443
No 272
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=5.2e-08 Score=98.44 Aligned_cols=196 Identities=14% Similarity=0.128 Sum_probs=130.7
Q ss_pred CeEEEEeCCCCCE-EEEeeCC---CcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEe-C--CCcEEEEECCCC
Q 009569 319 PVFTVSWSPNDHQ-LLTCGQE---EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGM-T--DKSICLWDLDGR 391 (532)
Q Consensus 319 ~v~~l~~s~~~~~-l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~--dg~i~iwd~~~~ 391 (532)
.+....|+|||+. ++..+.+ ..|.++|+.+++...... ..+......|+|||+.++... . +..|+++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6788999999984 6654443 469999999887655443 445566788999998876543 2 356888899888
Q ss_pred eEEEeecCccCceEEEEEeeCCCEEEEEECC-C--eEEEEECCCCce-eeeecCCceeEEEEcCCCCEEEEEecC-----
Q 009569 392 ELESWKGQKTLRISDMAITDDGKRIISICRE-A--AILLLDREANFE-RWIEEEEVITSFSLSKDNKYLLVNLIN----- 462 (532)
Q Consensus 392 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~I~iwd~~~~~~-~~~~~~~~i~~~~~sp~~~~l~~~~~d----- 462 (532)
....+..... ......|+|||+.|+..+.. + .|+++|+.++.. ........ ...|||||++|+.....
T Consensus 268 ~~~~LT~~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 268 TLTQITNYPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred cEEEcccCCC-ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCccc
Confidence 7766654432 23456899999988877643 2 688999988773 33322222 34899999998877643
Q ss_pred ----CeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCC---CcEEEEeCCCCCceee
Q 009569 463 ----QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED---SQVNIFLSFSPFAKKI 524 (532)
Q Consensus 463 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~d---g~i~iw~~~~~~~~~~ 524 (532)
..|.+.|+.++ . ...+...... ....| +|||+.|+..+.+ ..+.+.++.......+
T Consensus 345 ~~~~~~I~v~d~~~g-~-~~~LT~~~~~---~~p~~-SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 345 GKNTFNLYLISTNSD-Y-IRRLTANGVN---QFPRF-SSDGGSIMFIKYLGNQSALGIIRLNYNKSFLF 407 (419)
T ss_pred CCCCcEEEEEECCCC-C-eEECCCCCCc---CCeEE-CCCCCEEEEEEccCCcEEEEEEecCCCeeEEe
Confidence 36888888776 3 2334332211 22455 9999988766543 2377777766544443
No 273
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.16 E-value=1.8e-08 Score=97.54 Aligned_cols=248 Identities=17% Similarity=0.239 Sum_probs=172.5
Q ss_pred cceeEEccccccc--EE-EEEEccCCCEEEEEeCCCeEEEEEeecCCe-eEEEEEeecCCCCeEEEEeCCCC--CEEEE-
Q 009569 262 SQTLQILEAHSDE--VW-FLQFSHDGKYLASSSKDQSAIIWEVKEDGQ-VSLKHRLSGHRKPVFTVSWSPND--HQLLT- 334 (532)
Q Consensus 262 ~~~~~~l~~h~~~--V~-~v~~s~~g~~las~s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~--~~l~s- 334 (532)
+..+..+.+-..+ .| -+.|+-+.+|+|--. ...++|+++. +.- ......+. ...|....|+|.+ ..|+.
T Consensus 118 g~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~t-~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~ 193 (561)
T COG5354 118 GMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEIT-DNIEEHPFKNLR--PVGILDFSISPEGNHDELAYW 193 (561)
T ss_pred ceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEecC-CccccCchhhcc--ccceeeEEecCCCCCceEEEE
Confidence 4555666655555 66 788999998887553 3468999973 211 11112221 3567888999963 33443
Q ss_pred ----eeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEe-----------CCCcEEEEECCCCeEEEeecC
Q 009569 335 ----CGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGM-----------TDKSICLWDLDGRELESWKGQ 399 (532)
Q Consensus 335 ----~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----------~dg~i~iwd~~~~~~~~~~~~ 399 (532)
.+..+.+++|.+..+..+.+-.-....-..+.|.+.|+++++-. ....+++++++...+.... .
T Consensus 194 tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~ 272 (561)
T COG5354 194 TPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-D 272 (561)
T ss_pred ccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-c
Confidence 35578899999987766544333333345788999988876521 1346889999876665554 3
Q ss_pred ccCceEEEEEeeCCCEEEEEE--CCCeEEEEECCCCceeeeecCCceeEEEEcCCCCEEEEEecC---CeEEEEecCCCC
Q 009569 400 KTLRISDMAITDDGKRIISIC--REAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLIN---QEIHLWSIESDP 474 (532)
Q Consensus 400 ~~~~v~~~~~s~~~~~l~~~~--~dg~I~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~i~iwd~~~~~ 474 (532)
..++|.+.+|.|.++.+++.+ .+-.+.++|++.. ..+......=+.+.|+|.++++++++.| |.|-+||..+..
T Consensus 273 ~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf 351 (561)
T COG5354 273 LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF 351 (561)
T ss_pred ccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCce
Confidence 345899999999998776655 7788999999887 4555556666788999999999998765 579999998875
Q ss_pred cceeEEeccccceEEEEEccCCCCCcEEEEEe------CCCcEEEEeCCCCC
Q 009569 475 KLVSRYKGHKRARFVIRSCFGGFEQAFIASGS------EDSQVNIFLSFSPF 520 (532)
Q Consensus 475 ~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs------~dg~i~iw~~~~~~ 520 (532)
..+..+.+... ..|.| +||++++.+.. .|..|.||++....
T Consensus 352 ~~~~~~~~~n~----s~~~w-spd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 352 KVAGAFNGLNT----SYCDW-SPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred EEEEEeecCCc----eEeec-cCCceEEEecCCCcccccCcceEEEEecCch
Confidence 55557766553 22445 99999998764 48899999998754
No 274
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.13 E-value=3.1e-10 Score=100.07 Aligned_cols=114 Identities=19% Similarity=0.310 Sum_probs=94.7
Q ss_pred cchHHHHHHHHHHHHhcChHHHHHHHhhhcCcccCCH------HHHHHHHHHhcCChHHHHHHhhcCCCCChhHHHHHHH
Q 009569 61 IKKSEFIKIITRALYSLGYDKSGALLEEESGIPMHSS------VVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSASF 134 (532)
Q Consensus 61 i~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~~~------~~~~~~~~i~~G~w~~~~~~l~~l~~~~~~~~~~~~~ 134 (532)
++++++++||+.||-..||.++|..+.+|+||..+.. +-.+++..|..|+-++|...+.++....-..-+.+.|
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F 103 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFF 103 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHH
Confidence 6799999999999999999999999999999987321 3446899999999999999999985222122334789
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHhhccccCccCh-hhHHHh
Q 009569 135 LILEQKFLELLRRDKVSAALNSLRSEIVPLQINM-SRVHEL 174 (532)
Q Consensus 135 ~i~~q~~lelle~~~~~~a~~~L~~~l~pl~~~~-~~~~~l 174 (532)
.+++|++.||+..+...+|+.++|.++.|+.... +..+++
T Consensus 104 ~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~el 144 (228)
T KOG2659|consen 104 HLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEEL 144 (228)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHH
Confidence 9999999999999999999999999999988643 444443
No 275
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.13 E-value=2.8e-10 Score=113.97 Aligned_cols=244 Identities=16% Similarity=0.233 Sum_probs=168.2
Q ss_pred cEEEEEEccCC--CEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCC-CEEEEeeCCCcEEEEECCCCc
Q 009569 274 EVWFLQFSHDG--KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSGE 350 (532)
Q Consensus 274 ~V~~v~~s~~g--~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~ 350 (532)
.|-.+.|+|.. .+-++........+|++.....-.....+.+|...|+.+.|+|.. ..+++|+.|-.+..||+++..
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 35567777743 233444445556789987544444556678999999999999964 588999999999999998764
Q ss_pred -EEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECC-CCeEEEeecCccCceEEEEEeeC-CCEEEEEECCCeEEE
Q 009569 351 -CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD-GRELESWKGQKTLRISDMAITDD-GKRIISICREAAILL 427 (532)
Q Consensus 351 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~I~i 427 (532)
.+..+..-......+.|+.....+.+.+..+.|.+||++ +.....+...+...|+.++|..- ...+.+++.|++|+.
T Consensus 149 ~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkf 228 (1081)
T KOG0309|consen 149 RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKF 228 (1081)
T ss_pred cceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceee
Confidence 344444445556789999866677777778899999997 34444444445558888888753 346788899999999
Q ss_pred EECCCCc---eeeeecCCceeEEEEcCCCCEEEEE-----------ecCCeEEEEecCCCCcceeEEeccccceEEEEEc
Q 009569 428 LDREANF---ERWIEEEEVITSFSLSKDNKYLLVN-----------LINQEIHLWSIESDPKLVSRYKGHKRARFVIRSC 493 (532)
Q Consensus 428 wd~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~-----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 493 (532)
||..... ........+|..-.+.|-|.-.++- ..++....|+..+..+++++|.||...+ +.+.
T Consensus 229 w~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V--~eFl 306 (1081)
T KOG0309|consen 229 WDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVV--LEFL 306 (1081)
T ss_pred ecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHH--HHHh
Confidence 9987655 4455566777777777744322211 1233344566666668999999998752 2222
Q ss_pred cC---------CCCCcEEEEEeCCCcEEEEeCCCC
Q 009569 494 FG---------GFEQAFIASGSEDSQVNIFLSFSP 519 (532)
Q Consensus 494 ~~---------s~d~~~l~sgs~dg~i~iw~~~~~ 519 (532)
|- ....-.|+|-|.|..+++|-+.+.
T Consensus 307 WR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 307 WRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred hhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 21 112346899999999999998764
No 276
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=6.7e-09 Score=104.94 Aligned_cols=238 Identities=12% Similarity=0.121 Sum_probs=173.6
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCC------------CEEEEeeCCCcE
Q 009569 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND------------HQLLTCGQEEAI 341 (532)
Q Consensus 274 ~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~------------~~l~s~~~dg~i 341 (532)
.-.++.|+|.| +||.|+. ..|.+-|..+- +.+..+..|...|+.+.|.|-. -.|+++...|.|
T Consensus 17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~---q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSL---QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred cccccccCccc-eEEEecC-ceEEEEehhhh---hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 35688999988 5676764 46778887644 5667888899999999998821 256777788999
Q ss_pred EEEECCCCcEEEEeeccCCceEEEEEee---CC-CeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEee-CCCEE
Q 009569 342 RRWDVNSGECLHVYEKTGVGLISCGWFL---DG-GGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD-DGKRI 416 (532)
Q Consensus 342 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l 416 (532)
.+||...+..+..+..+..++..++|-+ +. ..+++-....++.+|+..+++..-..........|+.+.| |.+.+
T Consensus 92 il~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~ 171 (1062)
T KOG1912|consen 92 ILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHF 171 (1062)
T ss_pred EEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceE
Confidence 9999999998889999999999999987 33 4566666778999999987765443333333667788988 56667
Q ss_pred EEEECCCeEEEEECCCCc--------eee-eecCC----------------c---------eeEEEEcCCCCEEEEEecC
Q 009569 417 ISICREAAILLLDREANF--------ERW-IEEEE----------------V---------ITSFSLSKDNKYLLVNLIN 462 (532)
Q Consensus 417 ~~~~~dg~I~iwd~~~~~--------~~~-~~~~~----------------~---------i~~~~~sp~~~~l~~~~~d 462 (532)
...+..|.+.+.+.-... ..+ ..|.. . ...++|+|.-+.++.....
T Consensus 172 ~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p 251 (1062)
T KOG1912|consen 172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP 251 (1062)
T ss_pred EEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec
Confidence 776777777777653221 111 11110 0 1235778887777777778
Q ss_pred CeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 463 QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 463 g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
..+.++|++-. .++....-..+....+.+.. .|....|+++-.||.+.||-.+.
T Consensus 252 rellv~dle~~-~~l~vvpier~~akfv~vlP-~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 252 RELLVFDLEYE-CCLAVVPIERGGAKFVDVLP-DPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred cceEEEcchhh-ceeEEEEeccCCcceeEecc-CCCcceEEEEecCCeEEEEEeec
Confidence 88999999877 77777766666555666666 67778899999999999998775
No 277
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.10 E-value=2.2e-09 Score=96.83 Aligned_cols=195 Identities=15% Similarity=0.143 Sum_probs=133.4
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCC-CCEEEEeeCCCcEEEEECC-CCcEE
Q 009569 275 VWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVN-SGECL 352 (532)
Q Consensus 275 V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~-~~~~~ 352 (532)
-.++.|++.+..++++-.+|.+.+-+... ..++..+.++.|.-+++...|+.. .+.+.+|+.|+.+..||++ .++.+
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~-~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETE-MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecce-eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 45788999999999999999998554432 344555688999999999999874 4689999999999999998 44444
Q ss_pred EE-eeccCCceEEEEEee-CCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCC-EEEEEECCCeEEEEE
Q 009569 353 HV-YEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGK-RIISICREAAILLLD 429 (532)
Q Consensus 353 ~~-~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~I~iwd 429 (532)
.. .+.|...|.++.-+| .+.++++|+.|-.|++||.++-...-+.....+.|..+.++|.-. .++.++...-.+|.+
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 43 456788899998886 678999999999999999985322223333345899999999532 334445555566666
Q ss_pred CCCCc-------eeeeecCCceeEEEEcCCCCEEEEEec-CCeEE-EEec
Q 009569 430 REANF-------ERWIEEEEVITSFSLSKDNKYLLVNLI-NQEIH-LWSI 470 (532)
Q Consensus 430 ~~~~~-------~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~i~-iwd~ 470 (532)
..... .....|.+-...-.|.....+|++++. |..++ +|-.
T Consensus 283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred ecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeee
Confidence 65544 112234444444445333355676542 44433 5543
No 278
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=4.4e-09 Score=105.23 Aligned_cols=221 Identities=15% Similarity=0.171 Sum_probs=158.8
Q ss_pred eEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEE
Q 009569 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (532)
Q Consensus 265 ~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 344 (532)
-++++||++.|.-+.|+.+.+.|-|...+|.|.||-+-.+.-. ....-.-..+.|.+++|+.||..++..-.||.|.+=
T Consensus 64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~-EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVG 142 (1189)
T KOG2041|consen 64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWC-EEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVG 142 (1189)
T ss_pred hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHH-HHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEE
Confidence 4679999999999999999999999999999999998754211 111112245668999999999999999999999888
Q ss_pred ECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeE--------EEee---cCccCceEEEEEe---
Q 009569 345 DVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL--------ESWK---GQKTLRISDMAIT--- 410 (532)
Q Consensus 345 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------~~~~---~~~~~~v~~~~~s--- 410 (532)
.++..+ +.--.-.......+.|++|.+.++.+-.+|.+.+||..+.-. .... ......|..+.|.
T Consensus 143 svdGNR-IwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~ 221 (1189)
T KOG2041|consen 143 SVDGNR-IWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGP 221 (1189)
T ss_pred eeccce-ecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCc
Confidence 776433 221111223345788999999999999999999999875211 1111 1111246666664
Q ss_pred -----eCCCEEEEEECCCeEEEEECCCCc-eeeeecCCceeEEEEcCCCCEEEEEecCC---------eEEEEecCCCCc
Q 009569 411 -----DDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQ---------EIHLWSIESDPK 475 (532)
Q Consensus 411 -----~~~~~l~~~~~dg~I~iwd~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---------~i~iwd~~~~~~ 475 (532)
||...++++..+|.+.+..-.+.. ...+.....+....|+++|..|++++.+. .|.+|..- + +
T Consensus 222 ~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G-~ 299 (1189)
T KOG2041|consen 222 YQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-G-H 299 (1189)
T ss_pred cccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccc-h-h
Confidence 577889999999999988766655 55666668899999999999999997642 46666543 2 5
Q ss_pred ceeEEeccccceEE
Q 009569 476 LVSRYKGHKRARFV 489 (532)
Q Consensus 476 ~~~~~~~~~~~~~~ 489 (532)
.+.+++.....++.
T Consensus 300 i~gtlkvpg~~It~ 313 (1189)
T KOG2041|consen 300 IVGTLKVPGSCITG 313 (1189)
T ss_pred heEEEecCCceeee
Confidence 67777666554333
No 279
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=5.7e-10 Score=108.33 Aligned_cols=244 Identities=15% Similarity=0.269 Sum_probs=164.8
Q ss_pred ceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCC----eeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCC
Q 009569 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG----QVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE 338 (532)
Q Consensus 263 ~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~----~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 338 (532)
-.++.+.||+..|..++--.+.+-+++++.|++|++|.++..+ .-.+..+++.|..+|.++.|-.+.+++++ .|
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD 803 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CD 803 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--cc
Confidence 3456788999999998877788889999999999999997432 22366788999999999999988888776 47
Q ss_pred CcEEEEECCCCcEEEEeec--cCCceEEEEEee--CCCeEEEE-eCCCcEEEEECCCCeEE-Eee----cCccCceEEEE
Q 009569 339 EAIRRWDVNSGECLHVYEK--TGVGLISCGWFL--DGGGIFAG-MTDKSICLWDLDGRELE-SWK----GQKTLRISDMA 408 (532)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~--~~~~i~~~~~~~--~~~~l~~~-~~dg~i~iwd~~~~~~~-~~~----~~~~~~v~~~~ 408 (532)
|-|++||.--+..+..+.. ..+.+..+...+ +...+++| +...+|+++|.+..... .+. .....-+.+++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 8999999977776653321 122223333333 34444444 67889999999864322 111 22334689999
Q ss_pred EeeCCCEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEE-EecCCCCcceeEEecccc
Q 009569 409 ITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHL-WSIESDPKLVSRYKGHKR 485 (532)
Q Consensus 409 ~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~ 485 (532)
+.+.|++++++-.+|.|.+.|.+++. ..+.........++ .|..+.++....|.++.+ |..-.+ ......+....
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg-imh~q~kpppe 961 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG-IMHLQDKPPPE 961 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC-eeeeccCCCCc
Confidence 99999999999999999999999987 22333333332232 345667777777888888 886665 33323333332
Q ss_pred ceEEEEEccCCCCCcEEEEEeCCCcEEEEe
Q 009569 486 ARFVIRSCFGGFEQAFIASGSEDSQVNIFL 515 (532)
Q Consensus 486 ~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~ 515 (532)
+ ..|.-.-|.-++++...+.+.+|.
T Consensus 962 p-----ahflqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 962 P-----AHFLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred c-----hhhhhccCceeEEeccCcEEEEEe
Confidence 2 122223345667776666677764
No 280
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.07 E-value=7.7e-07 Score=83.88 Aligned_cols=215 Identities=13% Similarity=0.079 Sum_probs=142.6
Q ss_pred EEEEcc-CCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeC-CCCCEEEEeeCCCcEEEEECCCCcEEEE
Q 009569 277 FLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS-PNDHQLLTCGQEEAIRRWDVNSGECLHV 354 (532)
Q Consensus 277 ~v~~s~-~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 354 (532)
++.|.+ ++.++++--..+.|..|+..++. . .. +... . ...+.+. +++ .|+.+... .+.++|..+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~-~-~~--~~~~-~-~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE-V-EV--IDLP-G-PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTE-E-EE--EESS-S-EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCe-E-EE--EecC-C-CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEE
Confidence 577888 77777777788999999988542 1 12 2222 2 6667777 565 45555554 455669998866544
Q ss_pred eec-----cCCceEEEEEeeCCCeEEEEeCC--------CcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEE-EEE
Q 009569 355 YEK-----TGVGLISCGWFLDGGGIFAGMTD--------KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRII-SIC 420 (532)
Q Consensus 355 ~~~-----~~~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~ 420 (532)
... .....+.+++.|+|+..++.... |.|+.++.. +........- ...+.++|+|+++.|+ +-+
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~-~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL-GFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE-SSEEEEEEETTSSEEEEEET
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc-ccccceEECCcchheeeccc
Confidence 443 34567899999999977775543 568888888 4444443332 3688999999999776 455
Q ss_pred CCCeEEEEECCCCc------eeeeec-C--CceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEE
Q 009569 421 REAAILLLDREANF------ERWIEE-E--EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIR 491 (532)
Q Consensus 421 ~dg~I~iwd~~~~~------~~~~~~-~--~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 491 (532)
..+.|..|++.... ..+... . ...-.+++..+|++.++....+.|.++|.. + +.+..+...... ...
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G-~~~~~i~~p~~~--~t~ 229 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G-KLLREIELPVPR--PTN 229 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S-CEEEEEE-SSSS--EEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c-cEEEEEcCCCCC--EEE
Confidence 77889999986322 222222 2 247889999999988888889999999987 5 677777766333 456
Q ss_pred EccCCCCCcEEEEE
Q 009569 492 SCFGGFEQAFIASG 505 (532)
Q Consensus 492 ~~~~s~d~~~l~sg 505 (532)
++|..++.+.|+..
T Consensus 230 ~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 230 CAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEESTTSSEEEEE
T ss_pred EEEECCCCCEEEEE
Confidence 78867776665543
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.05 E-value=1e-07 Score=106.72 Aligned_cols=198 Identities=13% Similarity=0.137 Sum_probs=134.3
Q ss_pred cEEEEEEccCCCEEEEE-eCCCeEEEEEeecCCeeEEEEE-------eecC-------CCCeEEEEeCC-CCCEEEEeeC
Q 009569 274 EVWFLQFSHDGKYLASS-SKDQSAIIWEVKEDGQVSLKHR-------LSGH-------RKPVFTVSWSP-NDHQLLTCGQ 337 (532)
Q Consensus 274 ~V~~v~~s~~g~~las~-s~dg~i~iwd~~~~~~~~~~~~-------~~~h-------~~~v~~l~~s~-~~~~l~s~~~ 337 (532)
....++++++++.|+++ ..++.|+++|..++ .+..+.. +.+. -..-..++|+| ++..+++.+.
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~-~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNE-TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCC-EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 35788999988766554 44578999998753 2211110 0000 11235789999 5666677777
Q ss_pred CCcEEEEECCCCcEEEEeecc---------------CCceEEEEEeeCCCeEE-EEeCCCcEEEEECCCCeEEEeecC--
Q 009569 338 EEAIRRWDVNSGECLHVYEKT---------------GVGLISCGWFLDGGGIF-AGMTDKSICLWDLDGRELESWKGQ-- 399 (532)
Q Consensus 338 dg~i~iwd~~~~~~~~~~~~~---------------~~~i~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~-- 399 (532)
++.|++||..++... .+.+. -.....++++|+++.++ +-+.++.|++||++++........
T Consensus 704 ~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~ 782 (1057)
T PLN02919 704 QHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDP 782 (1057)
T ss_pred CCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccc
Confidence 899999999877543 22111 12356799999998555 455678999999986543211100
Q ss_pred -------------------ccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc-eeeeec--------------CCcee
Q 009569 400 -------------------KTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEE--------------EEVIT 445 (532)
Q Consensus 400 -------------------~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~-~~~~~~--------------~~~i~ 445 (532)
.......++++++|..+++-+.++.|++||..++. ....+. -....
T Consensus 783 ~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~ 862 (1057)
T PLN02919 783 TFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPA 862 (1057)
T ss_pred ccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCce
Confidence 00134689999999988888899999999998876 222221 12467
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEecCCC
Q 009569 446 SFSLSKDNKYLLVNLINQEIHLWSIESD 473 (532)
Q Consensus 446 ~~~~sp~~~~l~~~~~dg~i~iwd~~~~ 473 (532)
.++++++|+.+++.+.++.|++||+.++
T Consensus 863 GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 863 GLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred EEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 8999999998888888999999999886
No 282
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=2.2e-08 Score=97.73 Aligned_cols=241 Identities=13% Similarity=0.157 Sum_probs=141.1
Q ss_pred cEEEEEEccCCCEEEEEeC-----------CCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEE
Q 009569 274 EVWFLQFSHDGKYLASSSK-----------DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (532)
Q Consensus 274 ~V~~v~~s~~g~~las~s~-----------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 342 (532)
.|.-+.|||+.+||+|-+. ...++|||+.+|...+....+.+....-.-..||.|++++|-... ..|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEE
Confidence 4788999999999999653 257999999988433222222222122234689999999988766 4788
Q ss_pred EEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeC-------------------------------------------
Q 009569 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT------------------------------------------- 379 (532)
Q Consensus 343 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------------------------------------------- 379 (532)
||+..+...+..-.-.-..|....|+|.++.|+-=..
T Consensus 330 IyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLc 409 (698)
T KOG2314|consen 330 IYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLC 409 (698)
T ss_pred EEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEE
Confidence 8887653322111111223444445554443332110
Q ss_pred -----------CC---cEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEEC---CCeEEEEECCCCc--e--eee
Q 009569 380 -----------DK---SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR---EAAILLLDREANF--E--RWI 438 (532)
Q Consensus 380 -----------dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~I~iwd~~~~~--~--~~~ 438 (532)
.| .+.|+.++.+.+......-...|...+|-|.|+.+++-+. ..++.+|.+.+.. . ...
T Consensus 410 vkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~ 489 (698)
T KOG2314|consen 410 VKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKE 489 (698)
T ss_pred EEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhh
Confidence 00 1222222222211111111226788899999998777653 3568888887432 1 111
Q ss_pred ecCCceeEEEEcCCCCEEEEEe---cCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeC------CC
Q 009569 439 EEEEVITSFSLSKDNKYLLVNL---INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE------DS 509 (532)
Q Consensus 439 ~~~~~i~~~~~sp~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~------dg 509 (532)
-.....+.+.|+|.|++++++. ..|.+.++|+............|.. ....-| .|.|+|+++++. |.
T Consensus 490 ~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~---at~veW-DPtGRYvvT~ss~wrhk~d~ 565 (698)
T KOG2314|consen 490 LDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFA---ATEVEW-DPTGRYVVTSSSSWRHKVDN 565 (698)
T ss_pred hcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccc---cccceE-CCCCCEEEEeeehhhhcccc
Confidence 2235578899999999998764 5788999998752111111222322 233455 999999999976 44
Q ss_pred cEEEEeCCCC
Q 009569 510 QVNIFLSFSP 519 (532)
Q Consensus 510 ~i~iw~~~~~ 519 (532)
--+||++...
T Consensus 566 GYri~tfqGr 575 (698)
T KOG2314|consen 566 GYRIFTFQGR 575 (698)
T ss_pred ceEEEEeecH
Confidence 5677777654
No 283
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=1.2e-08 Score=103.18 Aligned_cols=261 Identities=15% Similarity=0.103 Sum_probs=175.4
Q ss_pred CCCCcceeEEcccccccEEEEEEccCC------------CEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEe
Q 009569 258 NRIPSQTLQILEAHSDEVWFLQFSHDG------------KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSW 325 (532)
Q Consensus 258 ~~~~~~~~~~l~~h~~~V~~v~~s~~g------------~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~ 325 (532)
+....+.++.++-|...|+.+.|.|-. -.||++...|.|.+||...+ .....+..|..++..++|
T Consensus 41 Ds~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~---s~~~~l~~~~~~~qdl~W 117 (1062)
T KOG1912|consen 41 DSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA---SVINWLSHSNDSVQDLCW 117 (1062)
T ss_pred ehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh---hhhhhhcCCCcchhheee
Confidence 444578899999999999999998731 25778888999999999865 344567788999999999
Q ss_pred CC---CC-CEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEee-CCCeEEEEeCCCcEEEEECCC-------CeE
Q 009569 326 SP---ND-HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDG-------REL 393 (532)
Q Consensus 326 s~---~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~-------~~~ 393 (532)
-+ +. ..|++-....+|.+|+..+|+....+........|+.+.| |.+.+..-+..|.+.+.+.-+ ++.
T Consensus 118 ~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~ 197 (1062)
T KOG1912|consen 118 VPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKE 197 (1062)
T ss_pred eeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCcee
Confidence 77 33 4666667778999999999999888877777778888888 777777777778777776531 222
Q ss_pred EEeecCccC-------------------------ceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--eeeeecCCceeE
Q 009569 394 ESWKGQKTL-------------------------RISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITS 446 (532)
Q Consensus 394 ~~~~~~~~~-------------------------~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~ 446 (532)
.++...+.. ....++|+|.-+.++.......+.++|++-.+ ....-..+.+.-
T Consensus 198 ~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akf 277 (1062)
T KOG1912|consen 198 FQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKF 277 (1062)
T ss_pred EEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcce
Confidence 233222111 01235678877777777788899999998776 222233444555
Q ss_pred EEEcCCC--CEEEEEecCCeEEEEecCCCCcc---------------eeEEeccccceEEEEEccCCCCCcEEEEEeCCC
Q 009569 447 FSLSKDN--KYLLVNLINQEIHLWSIESDPKL---------------VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS 509 (532)
Q Consensus 447 ~~~sp~~--~~l~~~~~dg~i~iwd~~~~~~~---------------~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg 509 (532)
+.+-|++ ..|++...||.+.+|--+..... +..+..-.....++..+. ..+...++.--.+|
T Consensus 278 v~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~c-Ps~~sa~avl~s~g 356 (1062)
T KOG1912|consen 278 VDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASC-PSTPSALAVLYSSG 356 (1062)
T ss_pred eEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecC-CCChhhhhhhhhcc
Confidence 6666654 68999999999999976552111 111111111111111221 11233444445688
Q ss_pred cEEEEeCCCCCce
Q 009569 510 QVNIFLSFSPFAK 522 (532)
Q Consensus 510 ~i~iw~~~~~~~~ 522 (532)
.+.+|.+.++...
T Consensus 357 ~~~~w~l~~~ri~ 369 (1062)
T KOG1912|consen 357 DSTFWQLSNGRIH 369 (1062)
T ss_pred hhHHHhhhcCCcC
Confidence 9999999976543
No 284
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.02 E-value=1.2e-07 Score=104.32 Aligned_cols=245 Identities=14% Similarity=0.167 Sum_probs=158.6
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEEee----c---------CC-------------e-----eEE----------
Q 009569 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVK----E---------DG-------------Q-----VSL---------- 309 (532)
Q Consensus 271 h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~----~---------~~-------------~-----~~~---------- 309 (532)
-...|.+++||||+..||..+.++++.+-+.. . +. + .+.
T Consensus 119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~ 198 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV 198 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence 45789999999999999999999988875421 0 00 0 000
Q ss_pred ----EEEeecCCCCeEEEEeCCCCCEEEEeeC---C---CcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeC
Q 009569 310 ----KHRLSGHRKPVFTVSWSPNDHQLLTCGQ---E---EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379 (532)
Q Consensus 310 ----~~~~~~h~~~v~~l~~s~~~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 379 (532)
...+. +...-..++|-.||.++|+.+. . ..++||+-+ |....+.+.-.+--.+++|.|.|++|++.-.
T Consensus 199 ~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~ 276 (928)
T PF04762_consen 199 PKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR 276 (928)
T ss_pred CccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE
Confidence 00011 2334567899999999998875 2 479999965 7655554433444457899999999998764
Q ss_pred ---CCcEEEEECCCCeEEEeec---CccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc----ee-eeecCCceeEEE
Q 009569 380 ---DKSICLWDLDGRELESWKG---QKTLRISDMAITDDGKRIISICREAAILLLDREANF----ER-WIEEEEVITSFS 448 (532)
Q Consensus 380 ---dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~----~~-~~~~~~~i~~~~ 448 (532)
...|.+|.-++-.-..+.. .....|..+.|++|+..|+....|. |.+|-..+.. .. .......+..+.
T Consensus 277 ~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~ 355 (928)
T PF04762_consen 277 LPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVK 355 (928)
T ss_pred cCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceE
Confidence 3467777766633333322 2344799999999999999977665 9999998876 11 122334456699
Q ss_pred EcCCC-CEEEEEecCCeEEEEecC----CCC-------cceeEEecc---------------------ccceEEEEEccC
Q 009569 449 LSKDN-KYLLVNLINQEIHLWSIE----SDP-------KLVSRYKGH---------------------KRARFVIRSCFG 495 (532)
Q Consensus 449 ~sp~~-~~l~~~~~dg~i~iwd~~----~~~-------~~~~~~~~~---------------------~~~~~~i~~~~~ 495 (532)
|+|.. ..|.+.+.+|.+..++.. ... ..+..+.|. .-+..+..++|
T Consensus 356 Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf- 434 (928)
T PF04762_consen 356 WDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAF- 434 (928)
T ss_pred ECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEE-
Confidence 99954 456666666766554432 110 011111111 01122455666
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCC
Q 009569 496 GFEQAFIASGSEDSQVNIFLSFSP 519 (532)
Q Consensus 496 s~d~~~l~sgs~dg~i~iw~~~~~ 519 (532)
++++..+++...||.|.+|.....
T Consensus 435 ~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 435 SPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred eCCCCeEEEEECCCCEEEEEecCC
Confidence 777777899999999999986553
No 285
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.01 E-value=1.1e-07 Score=104.39 Aligned_cols=235 Identities=16% Similarity=0.200 Sum_probs=157.2
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEE----EeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEEC
Q 009569 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIW----EVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (532)
Q Consensus 271 h~~~V~~v~~s~~g~~las~s~dg~i~iw----d~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 346 (532)
..+.|.++.+-++...++.+..+|.|.+. +..+ ..++.+ ..-...|.+++||||+..|+..+.++++.+.+-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~-~~~E~V---G~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~ 149 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDE-DEIEIV---GSVDSGILAASWSPDEELLALVTGEGNLLLMTR 149 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC-ceeEEE---EEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec
Confidence 45789999999999999999999999999 4442 222333 334578999999999999999999988877643
Q ss_pred CCCcEE------------------------EEeec------------------------cCCceEEEEEeeCCCeEEEEe
Q 009569 347 NSGECL------------------------HVYEK------------------------TGVGLISCGWFLDGGGIFAGM 378 (532)
Q Consensus 347 ~~~~~~------------------------~~~~~------------------------~~~~i~~~~~~~~~~~l~~~~ 378 (532)
. .+.+ ..|.+ ....-..++|-.||.++++.+
T Consensus 150 ~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss 228 (928)
T PF04762_consen 150 D-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSS 228 (928)
T ss_pred c-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEE
Confidence 1 1111 11110 122345788999999999877
Q ss_pred C---C---CcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEEC---CCeEEEEECCCCc---eee--eecCCce
Q 009569 379 T---D---KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR---EAAILLLDREANF---ERW--IEEEEVI 444 (532)
Q Consensus 379 ~---d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~I~iwd~~~~~---~~~--~~~~~~i 444 (532)
. . ..++||+-+ +.+......-.+--.+++|-|.|++|++... ...|.+|.....+ ..+ ......|
T Consensus 229 ~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v 307 (928)
T PF04762_consen 229 VEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKV 307 (928)
T ss_pred EEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCcee
Confidence 4 2 479999977 4454444444334567899999999998874 4567777765544 111 1345679
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEecCCCCcce--eEEeccccceEEEEEccCCCC-CcEEEEEeCCCcEEEEe
Q 009569 445 TSFSLSKDNKYLLVNLINQEIHLWSIESDPKLV--SRYKGHKRARFVIRSCFGGFE-QAFIASGSEDSQVNIFL 515 (532)
Q Consensus 445 ~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~i~~~~~s~d-~~~l~sgs~dg~i~iw~ 515 (532)
..+.|++|+..|++...|. |.+|-..+. .-. +.+....... ...+.| +|. ...|..++.+|.+.+++
T Consensus 308 ~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY-HWYLKqei~~~~~~~-~~~~~W-dpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 308 IELAWNSDSEILAVWLEDR-VQLWTRSNY-HWYLKQEIRFSSSES-VNFVKW-DPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred eEEEECCCCCEEEEEecCC-ceEEEeeCC-EEEEEEEEEccCCCC-CCceEE-CCCCCCEEEEEecCCcEEEEE
Confidence 9999999999999987555 999998775 322 2222221110 112445 553 44566666667765544
No 286
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=7e-09 Score=98.72 Aligned_cols=248 Identities=14% Similarity=0.172 Sum_probs=179.4
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeC-CCcEEEEECCCC
Q 009569 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRWDVNSG 349 (532)
Q Consensus 271 h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~ 349 (532)
|.+.|+.+.-+ -.+++.+++.||.++.|.-..-.-...+..+..|...|.+++.+-++..+.|.+. |..++++|+++-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 77777776543 5678999999999999987642334566667789999999999999999999777 999999999876
Q ss_pred cEEEEeeccCCceEEEEEee-CCC---eEEE-EeCCCcEEEEECCC--CeEEEeecCccCceEEEEEeeCCCEEEEEECC
Q 009569 350 ECLHVYEKTGVGLISCGWFL-DGG---GIFA-GMTDKSICLWDLDG--RELESWKGQKTLRISDMAITDDGKRIISICRE 422 (532)
Q Consensus 350 ~~~~~~~~~~~~i~~~~~~~-~~~---~l~~-~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 422 (532)
..+.-++...- ...+.|.. .|. .+++ .-.++.+.++|-.+ .+...+...|..+|..+.+++.+..+++....
T Consensus 87 DminmiKL~~l-Pg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 87 DMINMIKLVDL-PGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred chhhhcccccC-CCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 65533332211 12233332 231 3333 34678999999764 35556666777799999999999999999999
Q ss_pred CeEEEEECCC-Cc----------------eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEec---
Q 009569 423 AAILLLDREA-NF----------------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG--- 482 (532)
Q Consensus 423 g~I~iwd~~~-~~----------------~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--- 482 (532)
|.|.-|.... .+ ..+.......+++.|+|++..+.+-+.|..|++++.+++ ++++.+..
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG-klvqeiDE~~t 244 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLVQEIDEVLT 244 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc-hhhhhhhccch
Confidence 9999999873 11 111234566889999999999999999999999999987 55444321
Q ss_pred -----------------------------cccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCCceee
Q 009569 483 -----------------------------HKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPFAKKI 524 (532)
Q Consensus 483 -----------------------------~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~~~~~ 524 (532)
|. .......+| ...|++|+-|+-=| |++.++.++...++
T Consensus 245 ~~~~q~ks~y~l~~VelgRRmaverelek~~-~~~~~~~~f-des~~flly~t~~g-ikvin~~tn~v~ri 312 (558)
T KOG0882|consen 245 DAQYQPKSPYGLMHVELGRRMAVERELEKHG-STVGTNAVF-DESGNFLLYGTILG-IKVINLDTNTVVRI 312 (558)
T ss_pred hhhhccccccccceeehhhhhhHHhhHhhhc-CcccceeEE-cCCCCEEEeeccee-EEEEEeecCeEEEE
Confidence 11 112244566 77889998887655 88899888776554
No 287
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.99 E-value=3.9e-07 Score=91.77 Aligned_cols=225 Identities=13% Similarity=0.158 Sum_probs=138.5
Q ss_pred CCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEE-EEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCc
Q 009569 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT-VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVG 361 (532)
Q Consensus 283 ~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~-l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 361 (532)
++..++.++.++.+..+|..+++. ....... ..+.+ ... .+..++.++.++.|..||.++|+.+..+......
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~---~W~~~~~-~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~ 177 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKE---LWRAKLS-SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPA 177 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcE---eeeeccC-ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCc
Confidence 566788888999999999987643 2222211 22211 111 3456777788999999999999988776543321
Q ss_pred e-----EEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCc-c---C---ceEEEEEee--CCCEEEEEECCCeEEE
Q 009569 362 L-----ISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK-T---L---RISDMAITD--DGKRIISICREAAILL 427 (532)
Q Consensus 362 i-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~---~---~v~~~~~s~--~~~~l~~~~~dg~I~i 427 (532)
+ .+... .+..++.+..++.+..+|.+++...-..... . . ....+.-+| .+..+++++.+|.++.
T Consensus 178 ~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a 255 (377)
T TIGR03300 178 LTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAA 255 (377)
T ss_pred eeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEE
Confidence 1 11112 2346788888899999999776543211100 0 0 000111111 3557888889999999
Q ss_pred EECCCCceeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeC
Q 009569 428 LDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE 507 (532)
Q Consensus 428 wd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~ 507 (532)
||..+++.............. .++..+++++.+|.++.+|..++ +.+........... ... ...+..|++++.
T Consensus 256 ~d~~tG~~~W~~~~~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG-~~~W~~~~~~~~~~---ssp-~i~g~~l~~~~~ 328 (377)
T TIGR03300 256 LDLRSGRVLWKRDASSYQGPA--VDDNRLYVTDADGVVVALDRRSG-SELWKNDELKYRQL---TAP-AVVGGYLVVGDF 328 (377)
T ss_pred EECCCCcEEEeeccCCccCce--EeCCEEEEECCCCeEEEEECCCC-cEEEccccccCCcc---ccC-EEECCEEEEEeC
Confidence 999988743332222222222 24678888889999999999888 55544422111100 000 123568889999
Q ss_pred CCcEEEEeCCCCCce
Q 009569 508 DSQVNIFLSFSPFAK 522 (532)
Q Consensus 508 dg~i~iw~~~~~~~~ 522 (532)
+|.|++||..+++..
T Consensus 329 ~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 329 EGYLHWLSREDGSFV 343 (377)
T ss_pred CCEEEEEECCCCCEE
Confidence 999999999988654
No 288
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.99 E-value=3.4e-07 Score=83.13 Aligned_cols=207 Identities=19% Similarity=0.192 Sum_probs=134.4
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEeecCCe--eEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEE
Q 009569 277 FLQFSHDGKYLASSSKDQSAIIWEVKEDGQ--VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV 354 (532)
Q Consensus 277 ~v~~s~~g~~las~s~dg~i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 354 (532)
.++.+++|+.||.- .|..|.|-..+++-. .......++....=..++||||+..||.+...|+|+++|+.... +..
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFV 79 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEE
Confidence 46678899988876 566777776653211 11122222333345689999999999999999999999997533 333
Q ss_pred eecc-------CCceEEEEEeeC------CCeEEEEeCCCcEEEEECCC------Ce--EEEeecCccCceEEEEEeeCC
Q 009569 355 YEKT-------GVGLISCGWFLD------GGGIFAGMTDKSICLWDLDG------RE--LESWKGQKTLRISDMAITDDG 413 (532)
Q Consensus 355 ~~~~-------~~~i~~~~~~~~------~~~l~~~~~dg~i~iwd~~~------~~--~~~~~~~~~~~v~~~~~s~~~ 413 (532)
+... ...|..+.|.+. ...|++-..+|.++-|-+.. .+ ...+..+....|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 3221 245666666542 12455666677777665421 11 223333444589999999998
Q ss_pred CEEEEEECCC-----------eEEEEECCCCc----------------------ee-----e----eecCCceeEEEEcC
Q 009569 414 KRIISICREA-----------AILLLDREANF----------------------ER-----W----IEEEEVITSFSLSK 451 (532)
Q Consensus 414 ~~l~~~~~dg-----------~I~iwd~~~~~----------------------~~-----~----~~~~~~i~~~~~sp 451 (532)
++|++|+... -+..|.+-+.. .. + ......|..|++||
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP 239 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP 239 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC
Confidence 8887776321 24455442221 00 0 11355688999999
Q ss_pred CCCEEEEEecCCeEEEEecCCCCcceeEEeccccc
Q 009569 452 DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRA 486 (532)
Q Consensus 452 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 486 (532)
||..|++...+|.|.+|++.+- .....+..+..+
T Consensus 240 dg~~La~ih~sG~lsLW~iPsL-~~~~~W~~~eqP 273 (282)
T PF15492_consen 240 DGSLLACIHFSGSLSLWEIPSL-RLQRSWKQDEQP 273 (282)
T ss_pred CCCEEEEEEcCCeEEEEecCcc-hhhcccchhhCC
Confidence 9999999999999999999987 777777666554
No 289
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=8.6e-10 Score=107.10 Aligned_cols=205 Identities=15% Similarity=0.286 Sum_probs=150.4
Q ss_pred EEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCC-------CcEEEEeeccCCceEEEEEeeCCCeEEEEeCCC
Q 009569 309 LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS-------GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDK 381 (532)
Q Consensus 309 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 381 (532)
.+..+.+|+..|..++--.+.+-+++++.|++|++|.++. ..|..+++.|..+|.++.|..+.+++++ .||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccC
Confidence 3456789999999888777888999999999999999853 3477888999999999999988877765 488
Q ss_pred cEEEEECC-CCeEEEeec-CccCceEEEEEee--CCCEEEEE-ECCCeEEEEECCCCc--eee-----eecCCceeEEEE
Q 009569 382 SICLWDLD-GRELESWKG-QKTLRISDMAITD--DGKRIISI-CREAAILLLDREANF--ERW-----IEEEEVITSFSL 449 (532)
Q Consensus 382 ~i~iwd~~-~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~-~~dg~I~iwd~~~~~--~~~-----~~~~~~i~~~~~ 449 (532)
.|.+||.- +..+.++.. ...+.+..+..-+ +...++++ +...+|+++|.+... ..+ ......+.+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999974 433332221 1112344444444 33444444 678899999999876 222 233456889999
Q ss_pred cCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEE-EeCCCCC
Q 009569 450 SKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNI-FLSFSPF 520 (532)
Q Consensus 450 sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~i-w~~~~~~ 520 (532)
.+.|++++++-.+|.|.+.|.+++ +.+..++.-... .+..+ .|..+.++....|-.+.+ |..-++.
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G-~vINswrpmecd--llqla--apsdq~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNG-KVINSWRPMECD--LLQLA--APSDQALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCC-ceeccCCcccch--hhhhc--CchhHHHHhhcccceeEeeehhcCCe
Confidence 999999999999999999999998 777777655443 12222 466677887778888888 8776653
No 290
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.94 E-value=7.5e-10 Score=113.03 Aligned_cols=217 Identities=13% Similarity=0.153 Sum_probs=154.3
Q ss_pred ceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCC--c
Q 009569 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE--A 340 (532)
Q Consensus 263 ~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg--~ 340 (532)
+...++..|+...+|++|+-+.++|+.|+..|.|+++++.+|. ......+|.++|+.+.-+.||..+++.+.-. -
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~---~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS---MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc---ccccccccccccccccccCCcceeeeeccccCch
Confidence 5567788899999999999999999999999999999999873 4466789999999999999998777765533 4
Q ss_pred EEEEECC-CCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeE-EEeecC---ccCceEEEEEeeCCCE
Q 009569 341 IRRWDVN-SGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL-ESWKGQ---KTLRISDMAITDDGKR 415 (532)
Q Consensus 341 i~iwd~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~---~~~~v~~~~~s~~~~~ 415 (532)
..+|++. ++...++|.. -.++.|+.....-+.|+......+||+.+... .++... ....-++..|+|+..+
T Consensus 1169 saLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 7799984 3455555543 34677876555556666667789999987432 222211 1113477889999887
Q ss_pred EEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEc
Q 009569 416 IISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSC 493 (532)
Q Consensus 416 l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 493 (532)
++ .|| .+||++... ..+-... .-..-.|+|+|.-++..+. |||+++. ++++....-.. +++.
T Consensus 1245 Il---ndG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINSE-----IwD~RTF-~lLh~VP~Ldq----c~Vt 1308 (1516)
T KOG1832|consen 1245 IL---NDG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINSE-----IWDMRTF-KLLHSVPSLDQ----CAVT 1308 (1516)
T ss_pred Ee---eCc--eeeeeccHHHHhhhhhhe-ecccccccCCCceEEeech-----hhhhHHH-HHHhcCccccc----eEEE
Confidence 75 344 589998876 2222222 2233469999999999875 9999998 77766655443 4455
Q ss_pred cCCCCCcEEE
Q 009569 494 FGGFEQAFIA 503 (532)
Q Consensus 494 ~~s~d~~~l~ 503 (532)
| +..|..++
T Consensus 1309 F-NstG~VmY 1317 (1516)
T KOG1832|consen 1309 F-NSTGDVMY 1317 (1516)
T ss_pred e-ccCccchh
Confidence 5 55565544
No 291
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=4.1e-09 Score=97.05 Aligned_cols=152 Identities=18% Similarity=0.305 Sum_probs=120.7
Q ss_pred EEEee--CCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc------ee
Q 009569 365 CGWFL--DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF------ER 436 (532)
Q Consensus 365 ~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~------~~ 436 (532)
++|+- .+.. ++.+.+..+-+-|++++....+.. .+.|.++.|...++++..|+.+|.|..+|++... ..
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~qsf~s--ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSFQS--KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeeccccccccc--chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 35543 2444 444556778888998876666653 2378899999889999999999999999998762 66
Q ss_pred eeecCCceeEEEEcC-CCCEEEEEecCCeEEEEecCCCCcc---eeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEE
Q 009569 437 WIEEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIESDPKL---VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVN 512 (532)
Q Consensus 437 ~~~~~~~i~~~~~sp-~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~ 512 (532)
.+.|+..|+++..-. ++++|++.+.+|.|.+||++.. +. +..+.||.+....+-+.. .+...+|++++.|...+
T Consensus 294 rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~-K~~~~V~qYeGHvN~~a~l~~~v-~~eeg~I~s~GdDcytR 371 (425)
T KOG2695|consen 294 RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT-KCKKSVMQYEGHVNLSAYLPAHV-KEEEGSIFSVGDDCYTR 371 (425)
T ss_pred EEEcCcchhhhhhhccccceEeeccCcCceeEeeehhh-hcccceeeeeccccccccccccc-ccccceEEEccCeeEEE
Confidence 778999999998776 7899999999999999999876 55 899999987544443333 67788999999999999
Q ss_pred EEeCCCCCc
Q 009569 513 IFLSFSPFA 521 (532)
Q Consensus 513 iw~~~~~~~ 521 (532)
||.++++.+
T Consensus 372 iWsl~~ghL 380 (425)
T KOG2695|consen 372 IWSLDSGHL 380 (425)
T ss_pred EEecccCce
Confidence 999998754
No 292
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.91 E-value=4e-07 Score=88.37 Aligned_cols=236 Identities=14% Similarity=0.247 Sum_probs=156.1
Q ss_pred ccEEEEEEccCCCEEEEEeCC---------------CeEEEEEeecCCeeEEEEEeecCCCC--eE-EEEeCCCCCEEEE
Q 009569 273 DEVWFLQFSHDGKYLASSSKD---------------QSAIIWEVKEDGQVSLKHRLSGHRKP--VF-TVSWSPNDHQLLT 334 (532)
Q Consensus 273 ~~V~~v~~s~~g~~las~s~d---------------g~i~iwd~~~~~~~~~~~~~~~h~~~--v~-~l~~s~~~~~l~s 334 (532)
..|..+.|||.++||.+-+.. ..+.+||+.++ ..+..+.....+ .+ -+.|+-+.+++|-
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg---~iv~sf~~~~q~~~~Wp~~k~s~~D~y~AR 148 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG---MIVFSFNGISQPYLGWPVLKFSIDDKYVAR 148 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCc---eeEeeccccCCcccccceeeeeecchhhhh
Confidence 468899999999999986543 34899999976 455666655555 55 6788888887765
Q ss_pred eeCCCcEEEEECCCCcE-EEEeecc-CCceEEEEEeeCCC--eEEE-----EeCCCcEEEEECCCCeEEEeecCccCceE
Q 009569 335 CGQEEAIRRWDVNSGEC-LHVYEKT-GVGLISCGWFLDGG--GIFA-----GMTDKSICLWDLDGRELESWKGQKTLRIS 405 (532)
Q Consensus 335 ~~~dg~i~iwd~~~~~~-~~~~~~~-~~~i~~~~~~~~~~--~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 405 (532)
. ....++|+++ ++.. ...+... ...+....|+|.++ .|+. .+..+.+++|.+..+..........-.-.
T Consensus 149 v-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~ 226 (561)
T COG5354 149 V-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV 226 (561)
T ss_pred h-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc
Confidence 5 3457999997 3322 1111111 35678888888543 3443 45678899999864433322222211234
Q ss_pred EEEEeeCCCEEEEEE-----------CCCeEEEEECCCCceee-eecCCceeEEEEcCCCCEEEEE--ecCCeEEEEecC
Q 009569 406 DMAITDDGKRIISIC-----------REAAILLLDREANFERW-IEEEEVITSFSLSKDNKYLLVN--LINQEIHLWSIE 471 (532)
Q Consensus 406 ~~~~s~~~~~l~~~~-----------~dg~I~iwd~~~~~~~~-~~~~~~i~~~~~sp~~~~l~~~--~~dg~i~iwd~~ 471 (532)
.+.|.+.|+++++-. ....+++++++...... ....++|..++|.|.++.+++. ..+..+.++|++
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr 306 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR 306 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccc
Confidence 578888888765432 13568888888655332 2668999999999998776655 467889999998
Q ss_pred CCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCC---CcEEEEeCCCCC
Q 009569 472 SDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED---SQVNIFLSFSPF 520 (532)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~d---g~i~iw~~~~~~ 520 (532)
.+ +...+ ..... -...| +|.+++++.++-| |.|-+|+..+..
T Consensus 307 ~N--l~~~~--Pe~~r--NT~~f-sp~~r~il~agF~nl~gni~i~~~~~rf 351 (561)
T COG5354 307 GN--LRFYF--PEQKR--NTIFF-SPHERYILFAGFDNLQGNIEIFDPAGRF 351 (561)
T ss_pred cc--eEEec--CCccc--ccccc-cCcccEEEEecCCccccceEEeccCCce
Confidence 76 33222 22221 22344 8999999887765 678999987654
No 293
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.88 E-value=1.2e-06 Score=82.17 Aligned_cols=214 Identities=14% Similarity=0.118 Sum_probs=131.4
Q ss_pred CCeEEEEEeecCCeeEEEEEeec--CCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeC
Q 009569 293 DQSAIIWEVKEDGQVSLKHRLSG--HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD 370 (532)
Q Consensus 293 dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 370 (532)
+|+|..||..++.. +..... -.....+. ..+++..+++++.++.|..||..+|+.+..+.... .+...- ...
T Consensus 2 ~g~l~~~d~~tG~~---~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~-~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKE---LWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAP-VVD 75 (238)
T ss_dssp TSEEEEEETTTTEE---EEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGE-EEE
T ss_pred CCEEEEEECCCCCE---EEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-ccccee-eec
Confidence 67888899876633 333321 11222211 22356678888899999999999999988777532 221111 235
Q ss_pred CCeEEEEeCCCcEEEEECCCCeEEEe-ecCc---cCceEEEEEeeCCCEEEEEECCCeEEEEECCCCceeee--ecCCc-
Q 009569 371 GGGIFAGMTDKSICLWDLDGRELESW-KGQK---TLRISDMAITDDGKRIISICREAAILLLDREANFERWI--EEEEV- 443 (532)
Q Consensus 371 ~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~---~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~~~~~--~~~~~- 443 (532)
+..+++++.++.++.+|..++++.-. .... ...........++..++++..++.|..+|.++++.... .....
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 66777777888999999877655433 2211 11123334444588899999999999999999883222 11111
Q ss_pred ---------e-eEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEE
Q 009569 444 ---------I-TSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNI 513 (532)
Q Consensus 444 ---------i-~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~i 513 (532)
+ ..+.+. ++ .+++++.++.+..+|+.++ +.+.... ... ..... ..++..|+.++.++.|++
T Consensus 156 ~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg-~~~w~~~--~~~---~~~~~-~~~~~~l~~~~~~~~l~~ 226 (238)
T PF13360_consen 156 SSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATG-EKLWSKP--ISG---IYSLP-SVDGGTLYVTSSDGRLYA 226 (238)
T ss_dssp S--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTT-EEEEEEC--SS----ECECE-ECCCTEEEEEETTTEEEE
T ss_pred CcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCC-CEEEEec--CCC---ccCCc-eeeCCEEEEEeCCCEEEE
Confidence 1 222333 44 7777777886444499998 5443222 222 11212 456778888889999999
Q ss_pred EeCCCCCc
Q 009569 514 FLSFSPFA 521 (532)
Q Consensus 514 w~~~~~~~ 521 (532)
||+.+++.
T Consensus 227 ~d~~tG~~ 234 (238)
T PF13360_consen 227 LDLKTGKV 234 (238)
T ss_dssp EETTTTEE
T ss_pred EECCCCCE
Confidence 99999864
No 294
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.84 E-value=5.1e-06 Score=77.96 Aligned_cols=205 Identities=16% Similarity=0.232 Sum_probs=138.9
Q ss_pred EEEEEcc-CCCEEEEEeCCCe-EEEEEeecCCeeEEEEEeecCCCC--eEEEEeCCCCCEEEEeeC-----CCcEEEEEC
Q 009569 276 WFLQFSH-DGKYLASSSKDQS-AIIWEVKEDGQVSLKHRLSGHRKP--VFTVSWSPNDHQLLTCGQ-----EEAIRRWDV 346 (532)
Q Consensus 276 ~~v~~s~-~g~~las~s~dg~-i~iwd~~~~~~~~~~~~~~~h~~~--v~~l~~s~~~~~l~s~~~-----dg~i~iwd~ 346 (532)
..++.+| .+..++.+-.-|+ ..+||..++... ..+....+. .-.-.||+||++|++.-. .|.|-|||.
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~---~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLL---QRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCcee---eEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 4677888 5667777776665 668899876433 222222221 124689999999999744 478999999
Q ss_pred C-CCcEEEEeeccCCceEEEEEeeCCCeEEEEeC------------------CCcEEEEECCCCeEEEe-e---cCccCc
Q 009569 347 N-SGECLHVYEKTGVGLISCGWFLDGGGIFAGMT------------------DKSICLWDLDGRELESW-K---GQKTLR 403 (532)
Q Consensus 347 ~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------------------dg~i~iwd~~~~~~~~~-~---~~~~~~ 403 (532)
. +-+.+..+..+.-....+.+.|||+.|+++.. +..+...|..++.+... . ..+...
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 8 66778888888777888999999988887642 12344556665554433 2 234457
Q ss_pred eEEEEEeeCCCEEEEEECCCe-------EEEEECCCCc-------eeeeecCCceeEEEEcCCCCEEEEEec-CCeEEEE
Q 009569 404 ISDMAITDDGKRIISICREAA-------ILLLDREANF-------ERWIEEEEVITSFSLSKDNKYLLVNLI-NQEIHLW 468 (532)
Q Consensus 404 v~~~~~s~~~~~l~~~~~dg~-------I~iwd~~~~~-------~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~i~iw 468 (532)
|..+++.++|..++..-..|. |.+++..... .........+-+|++++++.++++.+- .|.+.+|
T Consensus 165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred eeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 999999999877666554432 5555544321 112234577999999999988876664 5689999
Q ss_pred ecCCCCcceeEEeccc
Q 009569 469 SIESDPKLVSRYKGHK 484 (532)
Q Consensus 469 d~~~~~~~~~~~~~~~ 484 (532)
|..++ ..+....-..
T Consensus 245 d~~tg-~~~~~~~l~D 259 (305)
T PF07433_consen 245 DAATG-RLLGSVPLPD 259 (305)
T ss_pred ECCCC-CEeeccccCc
Confidence 99998 6666554443
No 295
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.84 E-value=1e-07 Score=90.00 Aligned_cols=158 Identities=16% Similarity=0.154 Sum_probs=112.0
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEeecCCe-eEEEEEeecCCCCeEEEEeCCCCCEEEEee---CCCcEEEEECCCC
Q 009569 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ-VSLKHRLSGHRKPVFTVSWSPNDHQLLTCG---QEEAIRRWDVNSG 349 (532)
Q Consensus 274 ~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~---~dg~i~iwd~~~~ 349 (532)
.++.+..+|++++||.+..+....++++..... .+....... ...-+.+.|..+......+. ....+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 344566788889999888888877777764432 233332222 22233444444444444443 3445666666554
Q ss_pred cEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECC-CCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEE
Q 009569 350 ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD-GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLL 428 (532)
Q Consensus 350 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iw 428 (532)
.+ ..+-+|-..++.++|+||+++|+++..|..|++-... ...+..+.-+|...|..++..++ ..|++++.|++|++|
T Consensus 143 ~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 143 RC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLW 220 (390)
T ss_pred Cc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEE
Confidence 44 3445788899999999999999999999999997775 45556666667779999999875 458999999999999
Q ss_pred ECCCCc
Q 009569 429 DREANF 434 (532)
Q Consensus 429 d~~~~~ 434 (532)
|+.+++
T Consensus 221 d~~sgk 226 (390)
T KOG3914|consen 221 DITSGK 226 (390)
T ss_pred ecccCC
Confidence 999987
No 296
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.83 E-value=7e-08 Score=91.00 Aligned_cols=158 Identities=18% Similarity=0.227 Sum_probs=109.4
Q ss_pred eEEEEeCCCCCEEEEeeCCCcEEEEECCCCcE----EEEeeccCCceEEEEEeeCCCeEEEEeCCC---cEEEEECCCCe
Q 009569 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC----LHVYEKTGVGLISCGWFLDGGGIFAGMTDK---SICLWDLDGRE 392 (532)
Q Consensus 320 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~ 392 (532)
...+..++.++++|.+..+....++++..... ...+. -....+++.|..+.....++..-| .+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 34455677788888887777766666644322 22221 222344555655555555554444 45555544455
Q ss_pred EEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc---eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEe
Q 009569 393 LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (532)
Q Consensus 393 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd 469 (532)
.....+|-. .+++++|+||+++|+++..|..|++-...... ....+|..-|..++.-++. .|++++.|+++++||
T Consensus 144 ~~~~lGhvS-ml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 144 CEPILGHVS-MLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWD 221 (390)
T ss_pred cchhhhhhh-hhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEe
Confidence 555555544 89999999999999999999999998776554 4556799999999998654 589999999999999
Q ss_pred cCCCCcceeEEe
Q 009569 470 IESDPKLVSRYK 481 (532)
Q Consensus 470 ~~~~~~~~~~~~ 481 (532)
+.++ +.+.++.
T Consensus 222 ~~sg-k~L~t~d 232 (390)
T KOG3914|consen 222 ITSG-KLLDTCD 232 (390)
T ss_pred cccC-Ccccccc
Confidence 9998 5555543
No 297
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.80 E-value=4.6e-08 Score=86.95 Aligned_cols=166 Identities=11% Similarity=0.117 Sum_probs=104.9
Q ss_pred eEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeC-----CC
Q 009569 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-----EE 339 (532)
Q Consensus 265 ~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-----dg 339 (532)
+..+..|+++-.+-+.+-.++.++++..||.+.+++.+.. +........-...-.+.+....++.+.++.. -+
T Consensus 82 ~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~--~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 82 FKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKD--LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQD 159 (319)
T ss_pred eeeeeccCCCCCcccccccCCceEecCCCceEEEEechHH--HhhhhhcccccccccccceeecccEEecCCcceEeecc
Confidence 3444455554444444556778999999999999998742 1122222111111122233334555555432 24
Q ss_pred cEEEEECCCCcEEEEeeccCCceEEEEEeeC-CCeEEEEeCCCcEEEEECCCCe-EEEeecCccCceEEEEEee-CCCEE
Q 009569 340 AIRRWDVNSGECLHVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRE-LESWKGQKTLRISDMAITD-DGKRI 416 (532)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~-~~~~l 416 (532)
..++|+++..+....-......|.+++-+|. ...+++|+.||.+-+||.+... ...+...|..+++.+.|+| ++..|
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence 5667776544433222233444899999994 4566778899999999998642 2333445556899999999 56789
Q ss_pred EEEECCCeEEEEECCC
Q 009569 417 ISICREAAILLLDREA 432 (532)
Q Consensus 417 ~~~~~dg~I~iwd~~~ 432 (532)
++++.||.+.-||..+
T Consensus 240 ft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAST 255 (319)
T ss_pred eEecCCCcEEEEcCCC
Confidence 9999999999999765
No 298
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.79 E-value=2.3e-06 Score=86.27 Aligned_cols=222 Identities=10% Similarity=0.065 Sum_probs=137.4
Q ss_pred CCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCce
Q 009569 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL 362 (532)
Q Consensus 283 ~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i 362 (532)
.+..+++++.+|.+..+|..++.. +............+.. ++..++.++.++.+..+|..+|+.+........ +
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~---~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~ 137 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKR---LWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE-V 137 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcE---eeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCce-e
Confidence 466788888899999999887632 3332222221112222 467888888999999999999998876653322 2
Q ss_pred EEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCce-----EEEEEeeCCCEEEEEECCCeEEEEECCCCceee
Q 009569 363 ISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRI-----SDMAITDDGKRIISICREAAILLLDREANFERW 437 (532)
Q Consensus 363 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~~~~ 437 (532)
.+.-.. .+..++.++.++.++.||.++++..-........+ ...... +..++.+..++.+..+|.++++...
T Consensus 138 ~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 138 LSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred ecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEee
Confidence 211111 35577788889999999998765533222211111 111111 3467788888999999998887322
Q ss_pred eec---CC---c---eeEEEEcC--CCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEe
Q 009569 438 IEE---EE---V---ITSFSLSK--DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGS 506 (532)
Q Consensus 438 ~~~---~~---~---i~~~~~sp--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs 506 (532)
... .. . ...+.-+| .+..+++++.+|.++.||..++ +.+....... . ... ..++..|+.++
T Consensus 215 ~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG-~~~W~~~~~~-~-----~~p-~~~~~~vyv~~ 286 (377)
T TIGR03300 215 EQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG-RVLWKRDASS-Y-----QGP-AVDDNRLYVTD 286 (377)
T ss_pred eeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC-cEEEeeccCC-c-----cCc-eEeCCEEEEEC
Confidence 111 00 0 00111111 3567888888999999999888 5555443211 1 111 23456788888
Q ss_pred CCCcEEEEeCCCCCc
Q 009569 507 EDSQVNIFLSFSPFA 521 (532)
Q Consensus 507 ~dg~i~iw~~~~~~~ 521 (532)
.||.|+.+|..+++.
T Consensus 287 ~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 287 ADGVVVALDRRSGSE 301 (377)
T ss_pred CCCeEEEEECCCCcE
Confidence 999999999988753
No 299
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.79 E-value=1e-05 Score=76.24 Aligned_cols=192 Identities=15% Similarity=0.152 Sum_probs=125.6
Q ss_pred EEEeCC-CCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEe-eCCCeEEEEeCCCcEEEEECCCCeEEEeecC
Q 009569 322 TVSWSP-NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWF-LDGGGIFAGMTDKSICLWDLDGRELESWKGQ 399 (532)
Q Consensus 322 ~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 399 (532)
++.|.+ ++.++++-...+.|..|+..+++... +.... ...+.+. ++ ..++++... .+.++|..++.+..+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETT-CEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcC-ceEEEecCCCcEEEEeec
Confidence 578887 66666666678899999998876533 33222 6777787 55 555555554 456669988766554432
Q ss_pred -----ccCceEEEEEeeCCCEEEEEECC--------CeEEEEECCCCc-eeeeecCCceeEEEEcCCCCEEEE-EecCCe
Q 009569 400 -----KTLRISDMAITDDGKRIISICRE--------AAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLV-NLINQE 464 (532)
Q Consensus 400 -----~~~~v~~~~~s~~~~~l~~~~~d--------g~I~iwd~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~-~~~dg~ 464 (532)
.....++++++|+|++.++.... |.|..++.. ++ ......-...+.++|+|+++.|++ -+..+.
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccce
Confidence 33478999999999977776543 568888888 44 444445566789999999997764 566788
Q ss_pred EEEEecCCCCcce---eEEe-ccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCCc
Q 009569 465 IHLWSIESDPKLV---SRYK-GHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPFA 521 (532)
Q Consensus 465 i~iwd~~~~~~~~---~~~~-~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~~ 521 (532)
|..+++......+ ..+. ........-.+++ ..+|++.++....+.|.+++.+ |+.
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~v-D~~G~l~va~~~~~~I~~~~p~-G~~ 216 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAV-DSDGNLWVADWGGGRIVVFDPD-GKL 216 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEE-BTTS-EEEEEETTTEEEEEETT-SCE
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceE-cCCCCEEEEEcCCCEEEEECCC-ccE
Confidence 9999986432211 1221 1111111222444 7889988888889999999998 443
No 300
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.77 E-value=3.6e-06 Score=76.59 Aligned_cols=194 Identities=14% Similarity=0.135 Sum_probs=125.6
Q ss_pred EEeCCCCCEEEEeeCCCcEEEEECCCC--cEEEEe---eccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEee
Q 009569 323 VSWSPNDHQLLTCGQEEAIRRWDVNSG--ECLHVY---EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK 397 (532)
Q Consensus 323 l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 397 (532)
++.++||+.||. -.|..|.|-..+.. .++.+. +.....-..++|+||+..|+.+...|+|++||+.+..+..+.
T Consensus 3 ~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP 81 (282)
T ss_pred eeecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence 456778877776 45666766665432 122222 222334578999999999999999999999999987666554
Q ss_pred cCc------cCceEEEEEeeC------CCEEEEEECCCeEEEEECCCC--c-----eee--e-ecCCceeEEEEcCCCCE
Q 009569 398 GQK------TLRISDMAITDD------GKRIISICREAAILLLDREAN--F-----ERW--I-EEEEVITSFSLSKDNKY 455 (532)
Q Consensus 398 ~~~------~~~v~~~~~s~~------~~~l~~~~~dg~I~iwd~~~~--~-----~~~--~-~~~~~i~~~~~sp~~~~ 455 (532)
... ...|..+.|.+. ...|++...+|.++-|-+..+ + ..+ . .....|+++.++|..++
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~L 161 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRL 161 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCE
Confidence 432 235777777653 225667778888887776432 1 111 1 23568999999999999
Q ss_pred EEEEecCC-----------eEEEEecCCCCccee-------------------------EEe--c-cccceEEEEEccCC
Q 009569 456 LLVNLINQ-----------EIHLWSIESDPKLVS-------------------------RYK--G-HKRARFVIRSCFGG 496 (532)
Q Consensus 456 l~~~~~dg-----------~i~iwd~~~~~~~~~-------------------------~~~--~-~~~~~~~i~~~~~s 496 (532)
|++|+... -+..|.+-++..... .+. + .... +..+.. |
T Consensus 162 LlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~--i~kmSl-S 238 (282)
T PF15492_consen 162 LLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDG--IFKMSL-S 238 (282)
T ss_pred EEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCc--eEEEEE-C
Confidence 88886311 366676543310000 000 0 1222 333444 9
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCC
Q 009569 497 FEQAFIASGSEDSQVNIFLSFSPF 520 (532)
Q Consensus 497 ~d~~~l~sgs~dg~i~iw~~~~~~ 520 (532)
|||.+||+...+|.|.+|++.+-.
T Consensus 239 Pdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 239 PDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred CCCCEEEEEEcCCeEEEEecCcch
Confidence 999999999999999999998743
No 301
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.76 E-value=1.6e-05 Score=77.41 Aligned_cols=218 Identities=8% Similarity=0.021 Sum_probs=128.7
Q ss_pred CeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeC----------CCcEEEEECCCCcEEEEeeccC----
Q 009569 294 QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ----------EEAIRRWDVNSGECLHVYEKTG---- 359 (532)
Q Consensus 294 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~---- 359 (532)
++|.+.|..+. +.+..+..-..+- .+ +|||++.|+.+.. +..|.+||..+.+.+..+....
T Consensus 27 ~~v~ViD~~~~---~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAG---RVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCC---EEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 78999999865 3444444333332 24 9999998887766 6799999999999988876422
Q ss_pred ---CceEEEEEeeCCCeEEEEe-C-CCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc
Q 009569 360 ---VGLISCGWFLDGGGIFAGM-T-DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF 434 (532)
Q Consensus 360 ---~~i~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~ 434 (532)
.....+.++|||+++++.. . +..|.++|+.++++........ ...-...+++.. + +-+.||......+.+..
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~-~-~~~~Dg~~~~v~~d~~g 178 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTF-F-MHCRDGSLAKVGYGTKG 178 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCcc-E-EEeecCceEEEEecCCC
Confidence 2234788999999999876 4 7899999999877665444322 222222222221 1 22334443333222211
Q ss_pred ------eeeeec-CCce-eEEEEcC-CCCEEEEEecCCeEEEEecCCCC----cceeEEecc-------ccceEEEEEcc
Q 009569 435 ------ERWIEE-EEVI-TSFSLSK-DNKYLLVNLINQEIHLWSIESDP----KLVSRYKGH-------KRARFVIRSCF 494 (532)
Q Consensus 435 ------~~~~~~-~~~i-~~~~~sp-~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~-------~~~~~~i~~~~ 494 (532)
..++.. ..++ ..-.|++ +|+++++... |.|++.|+.... .....+... ...... ..+
T Consensus 179 ~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~--ia~ 255 (352)
T TIGR02658 179 NPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ--VAY 255 (352)
T ss_pred ceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCccee--EEE
Confidence 111111 0000 0114455 8888888886 999999965431 222222111 111112 344
Q ss_pred CCCCCcEEEEEe----------CCCcEEEEeCCCCCcee
Q 009569 495 GGFEQAFIASGS----------EDSQVNIFLSFSPFAKK 523 (532)
Q Consensus 495 ~s~d~~~l~sgs----------~dg~i~iw~~~~~~~~~ 523 (532)
+++++.++... ..+.|.++|..+++...
T Consensus 256 -~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~ 293 (352)
T TIGR02658 256 -HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLR 293 (352)
T ss_pred -cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEE
Confidence 88988888743 22579999998876433
No 302
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.76 E-value=1.2e-06 Score=78.38 Aligned_cols=223 Identities=10% Similarity=0.025 Sum_probs=141.3
Q ss_pred CCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCC-----CCCEEEEeeCCCcEEEEECCCCcEE-EEeeccCCceEEE
Q 009569 292 KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-----NDHQLLTCGQEEAIRRWDVNSGECL-HVYEKTGVGLISC 365 (532)
Q Consensus 292 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-----~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~ 365 (532)
....+-+|+..++.+ ..+... ..+.|-| ...+|+.|+..|...+|...+.+.. .....+...|+-+
T Consensus 50 ~t~sv~i~~~y~N~~-~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~ 121 (344)
T KOG4532|consen 50 KTISVPINSHYSNPK-GIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLV 121 (344)
T ss_pred ceeeeEeccccCCch-hhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhh
Confidence 344577787765421 122222 2344544 3458999999999999999866532 2222233222211
Q ss_pred EEee-CCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCce-----eeee
Q 009569 366 GWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFE-----RWIE 439 (532)
Q Consensus 366 ~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~~-----~~~~ 439 (532)
.-.. ..-.+..++.|.++++.+++.+..........-.+.++++++|++++++.+....|..|.+..... ....
T Consensus 122 ~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~ 201 (344)
T KOG4532|consen 122 KRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP 201 (344)
T ss_pred hhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecc
Confidence 1111 223467788899999999876544333222212488999999999999999999999999877651 1222
Q ss_pred cCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEE----eccccceEEEEEccCCCCCc--EEEEEeCCCcEEE
Q 009569 440 EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRY----KGHKRARFVIRSCFGGFEQA--FIASGSEDSQVNI 513 (532)
Q Consensus 440 ~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~i~~~~~s~d~~--~l~sgs~dg~i~i 513 (532)
....-.+.+|+.....+|++..||++.|||++....+.... ..|.+.+.. |-+++.|. +|...-.=+.+.+
T Consensus 202 t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~---c~Fsl~g~lDLLf~sEhfs~~hv 278 (344)
T KOG4532|consen 202 TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRV---CRFSLYGLLDLLFISEHFSRVHV 278 (344)
T ss_pred cCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEE---EEecCCCcceEEEEecCcceEEE
Confidence 33445678999999999999999999999999874444332 234454333 33355442 3443444578999
Q ss_pred EeCCCCCceeee
Q 009569 514 FLSFSPFAKKIK 525 (532)
Q Consensus 514 w~~~~~~~~~~~ 525 (532)
-|++++...++.
T Consensus 279 ~D~R~~~~~q~I 290 (344)
T KOG4532|consen 279 VDTRNYVNHQVI 290 (344)
T ss_pred EEcccCceeeEE
Confidence 999987655543
No 303
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=5.3e-06 Score=78.50 Aligned_cols=245 Identities=17% Similarity=0.168 Sum_probs=142.0
Q ss_pred ceeEEcccccccEEEEEEccCCC-EEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCC-CEEEEeeCCCc
Q 009569 263 QTLQILEAHSDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEA 340 (532)
Q Consensus 263 ~~~~~l~~h~~~V~~v~~s~~g~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~ 340 (532)
+..+.+.+|...|..++|||..+ ++..++.+.+|+|.|+++. .....+..+ ..+++++|.-|. ++|+.|..+|.
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~---~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS---CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccc---eeeeheecc-CCceeeeeccCCcceeEEeccCce
Confidence 44556778889999999999777 7788999999999999975 345566666 889999998865 57788888999
Q ss_pred EEEEECCCCcE-EEEeec--cCCceEEEEE------eeCCCeEEEEeCCCcEEEEECCC---CeEEEeecCccCceEEEE
Q 009569 341 IRRWDVNSGEC-LHVYEK--TGVGLISCGW------FLDGGGIFAGMTDKSICLWDLDG---RELESWKGQKTLRISDMA 408 (532)
Q Consensus 341 i~iwd~~~~~~-~~~~~~--~~~~i~~~~~------~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~ 408 (532)
|.|||++..+- +..+.. ...+|..++. ++.+.+++..+. .+..|++.. ...........+.+.++.
T Consensus 260 VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismq 337 (463)
T KOG1645|consen 260 VLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQ 337 (463)
T ss_pred EEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeee
Confidence 99999976542 122211 1233433332 223444444433 355666542 111112222233566677
Q ss_pred EeeCCCEEEEEECCC-------eEEE-EECCCCce---eeeec-CCc------eeEEEEcCCCCEEE-EEecCCeEEEEe
Q 009569 409 ITDDGKRIISICREA-------AILL-LDREANFE---RWIEE-EEV------ITSFSLSKDNKYLL-VNLINQEIHLWS 469 (532)
Q Consensus 409 ~s~~~~~l~~~~~dg-------~I~i-wd~~~~~~---~~~~~-~~~------i~~~~~sp~~~~l~-~~~~dg~i~iwd 469 (532)
+.+..+.++...... .|.. .|..++.. ....+ ... -..+.-.++.++++ +++..+.+.+||
T Consensus 338 y~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D 417 (463)
T KOG1645|consen 338 YHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQD 417 (463)
T ss_pred ecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEec
Confidence 766555554443220 0111 11111110 00000 110 11122234555554 445567899999
Q ss_pred cCCCCcceeEEeccccceEEEEEccCCCCCc-EEEEEeCCCcEEEEeCCC
Q 009569 470 IESDPKLVSRYKGHKRARFVIRSCFGGFEQA-FIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~-~l~sgs~dg~i~iw~~~~ 518 (532)
..+. +.++++.-. .+ +.+++.+..++. +|++- .|..++||..++
T Consensus 418 ~~s~-evvQ~l~~~-ep--v~Dicp~~~n~~syLa~L-Td~~v~Iyk~es 462 (463)
T KOG1645|consen 418 PHSF-EVVQTLALS-EP--VLDICPNDTNGSSYLALL-TDDRVHIYKNES 462 (463)
T ss_pred cchh-heeeecccC-cc--eeecceeecCCcchhhhe-ecceEEEEecCC
Confidence 9998 888888765 44 344555455544 55544 577888887654
No 304
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.73 E-value=5.8e-08 Score=97.82 Aligned_cols=223 Identities=18% Similarity=0.242 Sum_probs=150.1
Q ss_pred ceeeccCCccCCCCCc----ceeEEcccccccEEEEEEccC-CCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeE
Q 009569 247 FSLYSDHQCGRNRIPS----QTLQILEAHSDEVWFLQFSHD-GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVF 321 (532)
Q Consensus 247 ~~~~~~~~~~~~~~~~----~~~~~l~~h~~~V~~v~~s~~-g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 321 (532)
+.-|+.+....|++.. ..-..+.+|...|+.+-|+|. ...+|+++.|-.+..||+.+... +...+..-.....
T Consensus 85 iVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~as 162 (1081)
T KOG0309|consen 85 IVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAAS 162 (1081)
T ss_pred EEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccCc
Confidence 3444444444444432 344567899999999999994 46889999999999999986543 3344444445567
Q ss_pred EEEeCCCCCEEEEeeCCCcEEEEECCCC-cEEEEeeccCCceEEEEEee-CCCeEEEEeCCCcEEEEECCCC--eEEEee
Q 009569 322 TVSWSPNDHQLLTCGQEEAIRRWDVNSG-ECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGR--ELESWK 397 (532)
Q Consensus 322 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~--~~~~~~ 397 (532)
.+.|+-....+++.+....|.+||.+.| .++..+++|...+..+.|+. ....+.+++.|++|+.||.+.. +.....
T Consensus 163 qVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v 242 (1081)
T KOG0309|consen 163 QVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV 242 (1081)
T ss_pred eeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec
Confidence 8999886656666677789999999766 46778888888888888875 3456888999999999998642 222222
Q ss_pred cCccCceEEEEEeeCCC--EEEEEECCCeEEEEECCC---------Cc---eeeeecCCceeEEEEcCCC----------
Q 009569 398 GQKTLRISDMAITDDGK--RIISICREAAILLLDREA---------NF---ERWIEEEEVITSFSLSKDN---------- 453 (532)
Q Consensus 398 ~~~~~~v~~~~~s~~~~--~l~~~~~dg~I~iwd~~~---------~~---~~~~~~~~~i~~~~~sp~~---------- 453 (532)
.. ..+|..-.+.|-|. ++.-.-.+..+.+++.++ .. ..+.+|...|...-|-..+
T Consensus 243 tt-~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rd 321 (1081)
T KOG0309|consen 243 TT-NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRD 321 (1081)
T ss_pred cc-cCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccc
Confidence 22 22666667777444 222222223444444332 22 5677888777666654322
Q ss_pred CEEEEEecCCeEEEEecCC
Q 009569 454 KYLLVNLINQEIHLWSIES 472 (532)
Q Consensus 454 ~~l~~~~~dg~i~iwd~~~ 472 (532)
-.|++-+.|..+++|-+.+
T Consensus 322 fQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 322 FQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred eeEEEeecCCceEeeeccH
Confidence 2688999999999998865
No 305
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.70 E-value=5.3e-08 Score=62.54 Aligned_cols=38 Identities=29% Similarity=0.615 Sum_probs=36.3
Q ss_pred ceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEE
Q 009569 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWE 300 (532)
Q Consensus 263 ~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd 300 (532)
+++.++++|.+.|++++|+|++.+|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57789999999999999999999999999999999997
No 306
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.69 E-value=6.4e-06 Score=88.20 Aligned_cols=198 Identities=17% Similarity=0.233 Sum_probs=139.1
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECC---
Q 009569 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN--- 347 (532)
Q Consensus 271 h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~--- 347 (532)
..+.|.++.|.-++.-++.+..+|.|.+-|..+.. ......-.+.|.+++||||++.++..+.++++.+-+-.
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~----~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~ 142 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLE----LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEP 142 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccc----eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccc
Confidence 34689999999999999999999999999887542 22233346789999999999999988888877665431
Q ss_pred -C-------------------CcEEEEeecc---------------------CCceEEEEEeeCCCeEEEEe----CC-C
Q 009569 348 -S-------------------GECLHVYEKT---------------------GVGLISCGWFLDGGGIFAGM----TD-K 381 (532)
Q Consensus 348 -~-------------------~~~~~~~~~~---------------------~~~i~~~~~~~~~~~l~~~~----~d-g 381 (532)
. |+....|.+. ...=++++|--||.++++.. .+ .
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 0 1111122211 11124588999999998833 33 7
Q ss_pred cEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEE---CCCeEEEEECCCCce-----eeeecCCceeEEEEcCCC
Q 009569 382 SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC---REAAILLLDREANFE-----RWIEEEEVITSFSLSKDN 453 (532)
Q Consensus 382 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~I~iwd~~~~~~-----~~~~~~~~i~~~~~sp~~ 453 (532)
.|++||.+ +.+........+.-.+++|-|.|..+++.. .|+.|.+|....... .+.....++..++|+.++
T Consensus 223 kirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~s 301 (1265)
T KOG1920|consen 223 KIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNS 301 (1265)
T ss_pred eEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCC
Confidence 89999988 444444444444567899999999988864 556799998766541 122233449999999999
Q ss_pred CEEEE---EecCCeEEEEecCCC
Q 009569 454 KYLLV---NLINQEIHLWSIESD 473 (532)
Q Consensus 454 ~~l~~---~~~dg~i~iwd~~~~ 473 (532)
..|++ ......|++|-+.+.
T Consensus 302 diLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CceeeeecccccceEEEEEecCe
Confidence 99988 454556999998765
No 307
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=7.5e-06 Score=84.63 Aligned_cols=205 Identities=14% Similarity=0.222 Sum_probs=141.5
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCC-eEEEEeCCCCCEEEEeeCCC-----cEEEEECC
Q 009569 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP-VFTVSWSPNDHQLLTCGQEE-----AIRRWDVN 347 (532)
Q Consensus 274 ~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~-v~~l~~s~~~~~l~s~~~dg-----~i~iwd~~ 347 (532)
.|+| |++.+..+|.|+.+|.|.+.+-. ++....+..+... |..+....+..+|++.+.|+ .|+||+++
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s----~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSS----FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEeccc----ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 4444 67888999999999998877643 3455677777777 44444433446888887765 49999995
Q ss_pred CC------cEE---EEee----ccCCceEEEEEeeCCCeEEEEeCCCcEEEEECC---C-CeEEEeecCccCceEEEEEe
Q 009569 348 SG------ECL---HVYE----KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD---G-RELESWKGQKTLRISDMAIT 410 (532)
Q Consensus 348 ~~------~~~---~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~---~-~~~~~~~~~~~~~v~~~~~s 410 (532)
.- .++ +.+. ....++.+++.+.+-+.+|+|-.+|.|..+.=+ . +...........+|+.+++.
T Consensus 101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~ 180 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR 180 (933)
T ss_pred ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe
Confidence 32 333 2222 125678899999999999999999999988532 1 11222223333489999999
Q ss_pred eCCCEEEEEECCCeEEEEECCCCc---eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEe-ccccc
Q 009569 411 DDGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK-GHKRA 486 (532)
Q Consensus 411 ~~~~~l~~~~~dg~I~iwd~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~ 486 (532)
.+++.++.+.....|.+|.+.... ...-.+...+.|.++++....+++++ +..+.+||.... .+...|. ||...
T Consensus 181 ~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~-~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 181 SDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGR-GPCFAFEVGEKKE 258 (933)
T ss_pred cCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCc-ceeeeecCCCeEE
Confidence 999875555566689999988554 23456777899999998666465555 556999998766 5556666 66553
No 308
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.58 E-value=2.7e-05 Score=73.19 Aligned_cols=184 Identities=16% Similarity=0.134 Sum_probs=128.8
Q ss_pred EEEccCCCEEEEE-----eCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeC---------------
Q 009569 278 LQFSHDGKYLASS-----SKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ--------------- 337 (532)
Q Consensus 278 v~~s~~g~~las~-----s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~--------------- 337 (532)
-.||+||++|++. +..|.|-|||.. ..+..+..+..|.-.-..+.+.|||+.|+.+..
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~--~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAA--RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECc--CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecCh
Confidence 4699999999985 345889999998 346777888888777888999999987777531
Q ss_pred ---CCcEEEEECCCCcEEEEee----ccCCceEEEEEeeCCCeEEEEeCCC-------cEEEEECCCCeEEEeec-----
Q 009569 338 ---EEAIRRWDVNSGECLHVYE----KTGVGLISCGWFLDGGGIFAGMTDK-------SICLWDLDGRELESWKG----- 398 (532)
Q Consensus 338 ---dg~i~iwd~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~----- 398 (532)
+-++...|..+|+.+.... .|...|..+++.++|..++..-..| -+.+++.... +..+..
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~ 212 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQW 212 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHH
Confidence 2357777888898877643 3667899999999987666544333 2444443321 211111
Q ss_pred -CccCceEEEEEeeCCCEEEEEE-CCCeEEEEECCCCceeeeecCCceeEEEEcCCCCEEEEEecCCeEE
Q 009569 399 -QKTLRISDMAITDDGKRIISIC-REAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIH 466 (532)
Q Consensus 399 -~~~~~v~~~~~s~~~~~l~~~~-~dg~I~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~ 466 (532)
.-.+.+-+|++++++..+++.+ ..+.+.+||..++...-...-..+..++-.+++ ++++.+ .|.+.
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~ssG-~G~~~ 280 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLVSSG-QGQLI 280 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc-eEEeCC-CccEE
Confidence 1123799999999999887666 678899999999885444455567778777777 555544 45533
No 309
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.55 E-value=2.1e-06 Score=88.99 Aligned_cols=180 Identities=13% Similarity=0.108 Sum_probs=130.8
Q ss_pred CCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCce
Q 009569 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL 362 (532)
Q Consensus 283 ~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i 362 (532)
++..++.|+....+..+|+.+.. ..+...-..+.|.-++. +++++.+|...|+|.+-|..+.+.++++..|.+.|
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~---e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~si 220 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEK---ETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSI 220 (1118)
T ss_pred CCcceeecchhhheeeeecccce---eeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccce
Confidence 44567777777788888888652 22333233334665554 67899999999999999999999999999999998
Q ss_pred EEEEEeeCCCeEEEEeC---------CCcEEEEECCCCeEEEeecCccCceEEEEEeeC-CCEEEEEECCCeEEEEEC--
Q 009569 363 ISCGWFLDGGGIFAGMT---------DKSICLWDLDGRELESWKGQKTLRISDMAITDD-GKRIISICREAAILLLDR-- 430 (532)
Q Consensus 363 ~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~I~iwd~-- 430 (532)
..+.. .|+.|++++. |..|++||++.-....-...+. ...-+.|.|. ...+++++..|...+.|.
T Consensus 221 SDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~-~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 221 SDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY-GPQFLRFHPSLTTRLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred eeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc-CchhhhhcccccceEEEEecccceeeccccc
Confidence 76655 6889998874 5568999998743332222222 1234566774 347888889999999994
Q ss_pred -CCCc---eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEec
Q 009569 431 -EANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (532)
Q Consensus 431 -~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~ 470 (532)
.+.. .........+..+++|++++.++.|..+|.|.+|.-
T Consensus 298 lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 298 LSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 3332 222334455999999999999999999999999983
No 310
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.55 E-value=3.8e-07 Score=81.23 Aligned_cols=196 Identities=16% Similarity=0.142 Sum_probs=116.9
Q ss_pred eEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEE------------EEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEE
Q 009569 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL------------HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387 (532)
Q Consensus 320 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 387 (532)
++.+.++- .-.|+++..++.+......++.+. +.+..+.++-.+-..+-.++.+++++.||.+.+++
T Consensus 39 ~~~~~~v~-~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSA-EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechh-hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 44555543 334555555655555444333322 22222322222222233467799999999999999
Q ss_pred CCCC-eE-EEeecCccCceEEEEEeeCCCEEEEEE-----CCCeEEEEECCCCc--eeeeecCCceeEEEEcCCC-CEEE
Q 009569 388 LDGR-EL-ESWKGQKTLRISDMAITDDGKRIISIC-----REAAILLLDREANF--ERWIEEEEVITSFSLSKDN-KYLL 457 (532)
Q Consensus 388 ~~~~-~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~-~~l~ 457 (532)
.+.- .+ .+....+. .--+.++...++.+.++. .-+..+.|+++... .........|++++-+|.. ..++
T Consensus 118 ~~~~~~~~~~i~~~~~-~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~ 196 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHS-GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVC 196 (319)
T ss_pred chHHHhhhhhcccccc-cccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEE
Confidence 8751 01 11111111 112223333444444432 22456677766554 1112223349999999965 5667
Q ss_pred EEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC
Q 009569 458 VNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSP 519 (532)
Q Consensus 458 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~ 519 (532)
+|+.||.+-+||.+....++..+..|...++- +.|...++..|+++++||.+..||..+.
T Consensus 197 cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~e--V~FHpk~p~~Lft~sedGslw~wdas~~ 256 (319)
T KOG4714|consen 197 CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWE--VHFHPKNPEHLFTCSEDGSLWHWDASTT 256 (319)
T ss_pred EecCCCeEEEEEcccccchHHHHHHhhhhhhh--eeccCCCchheeEecCCCcEEEEcCCCc
Confidence 78889999999999886777788999988655 4553456788999999999999999864
No 311
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.55 E-value=2.6e-05 Score=72.92 Aligned_cols=188 Identities=16% Similarity=0.187 Sum_probs=117.3
Q ss_pred cCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEe-eccC-
Q 009569 282 HDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY-EKTG- 359 (532)
Q Consensus 282 ~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~- 359 (532)
+++.++++++.++.+..||..++. ....+.. ...+.... ..++..++.++.++.|..+|..+|+.+... ....
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~---~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~ 108 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGK---VLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP 108 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSE---EEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC
T ss_pred EeCCEEEEEcCCCEEEEEECCCCC---EEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeecccccc
Confidence 356677777899999999998773 3333332 12111111 124556777778889999999999998874 3221
Q ss_pred --CceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCc----------eEEEEEeeCCCEEEEEECCCeEEE
Q 009569 360 --VGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLR----------ISDMAITDDGKRIISICREAAILL 427 (532)
Q Consensus 360 --~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------v~~~~~s~~~~~l~~~~~dg~I~i 427 (532)
..........++..++++..++.|..+|++++.+.-........ +..-....++ .++.++.++.+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~ 187 (238)
T PF13360_consen 109 PAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVA 187 (238)
T ss_dssp TCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEE
T ss_pred ccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEE
Confidence 11223333445888999998999999999877664333222211 1122222244 7777777776444
Q ss_pred EECCCCceeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcce
Q 009569 428 LDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLV 477 (532)
Q Consensus 428 wd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~ 477 (532)
+|..+++.........+... ...++..|++++.++.|..||++++ +.+
T Consensus 188 ~d~~tg~~~w~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG-~~~ 235 (238)
T PF13360_consen 188 VDLATGEKLWSKPISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTG-KVV 235 (238)
T ss_dssp EETTTTEEEEEECSS-ECEC-EECCCTEEEEEETTTEEEEEETTTT-EEE
T ss_pred EECCCCCEEEEecCCCccCC-ceeeCCEEEEEeCCCEEEEEECCCC-CEE
Confidence 49999984443332333331 4567788888889999999999998 543
No 312
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.53 E-value=2.1e-06 Score=89.00 Aligned_cols=183 Identities=14% Similarity=0.107 Sum_probs=135.0
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEE
Q 009569 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDM 407 (532)
Q Consensus 328 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 407 (532)
++..++.|+....+..+|+++.+..+...-....+.-++. +++.+++|...|+|.+-|.++.+.......|++.|.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 4456777888888999999988877776655545555544 68899999999999999999887777777777788766
Q ss_pred EEeeCCCEEEEEEC---------CCeEEEEECCCCc-eeeeecCCceeEEEEcCC-CCEEEEEecCCeEEEEecCCCC-c
Q 009569 408 AITDDGKRIISICR---------EAAILLLDREANF-ERWIEEEEVITSFSLSKD-NKYLLVNLINQEIHLWSIESDP-K 475 (532)
Q Consensus 408 ~~s~~~~~l~~~~~---------dg~I~iwd~~~~~-~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~i~iwd~~~~~-~ 475 (532)
.. .|+.|++++. |..|+|||++..+ ..-+.......-+.|+|. ...+++++..|...+-|..+.. .
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP 301 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP 301 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCC
Confidence 55 5889998875 4558999999877 222222223355778885 3578888889999999943322 2
Q ss_pred ceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEe
Q 009569 476 LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFL 515 (532)
Q Consensus 476 ~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~ 515 (532)
....+.-+.....+...++ +++++.++.|..+|.|.+|.
T Consensus 302 ~~~~~~v~p~~s~i~~fDi-Ssn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 302 PAGVKMVNPNGSGISAFDI-SSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccceeEEccCCCcceeEEe-cCCCceEEEecccCcEeeec
Confidence 3445554544444556677 99999999999999999998
No 313
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.51 E-value=1.2e-06 Score=80.07 Aligned_cols=201 Identities=16% Similarity=0.219 Sum_probs=131.6
Q ss_pred CCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCc-E----EEEeeccC------------CceEEEEEeeCC--CeEEEE
Q 009569 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE-C----LHVYEKTG------------VGLISCGWFLDG--GGIFAG 377 (532)
Q Consensus 317 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~----~~~~~~~~------------~~i~~~~~~~~~--~~l~~~ 377 (532)
...|+++.|...|.||++|...|.|.++.-.... | ...|+.|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4568999999999999999999999999764332 1 22344442 346778888654 457778
Q ss_pred eCCCcEEEEECCCCeEE-------------------------------------------EeecCccCceEEEEEeeCCC
Q 009569 378 MTDKSICLWDLDGRELE-------------------------------------------SWKGQKTLRISDMAITDDGK 414 (532)
Q Consensus 378 ~~dg~i~iwd~~~~~~~-------------------------------------------~~~~~~~~~v~~~~~s~~~~ 414 (532)
+.|.+|++|.+..+.+. .....|...|.++.|+.|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 89999999988532110 01113334578888988887
Q ss_pred EEEEEECCCeEEEEECCCCc-----eeeeec-----CCceeEEEEcCCC-CEEEEEecCCeEEEEecCCCCcc-----ee
Q 009569 415 RIISICREAAILLLDREANF-----ERWIEE-----EEVITSFSLSKDN-KYLLVNLINQEIHLWSIESDPKL-----VS 478 (532)
Q Consensus 415 ~l~~~~~dg~I~iwd~~~~~-----~~~~~~-----~~~i~~~~~sp~~-~~l~~~~~dg~i~iwd~~~~~~~-----~~ 478 (532)
.+++ ..|-.|.+|++.-.. ....+| ...|++..|+|.. ..+...+..|.|++-|++...-+ +.
T Consensus 186 t~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 7776 467789999987543 112222 3458899999954 45556677999999999843111 11
Q ss_pred E--Eecc-----ccceE-EEEEccCCCCCcEEEEEeCCCcEEEEeCCCCC
Q 009569 479 R--YKGH-----KRARF-VIRSCFGGFEQAFIASGSEDSQVNIFLSFSPF 520 (532)
Q Consensus 479 ~--~~~~-----~~~~~-~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~ 520 (532)
. +.+- ...+. +-.+.| +++|++|++-+ =.+|+|||++..+
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kF-s~ngryIlsRd-yltvkiwDvnm~k 312 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKF-SDNGRYILSRD-YLTVKIWDVNMAK 312 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEE-cCCCcEEEEec-cceEEEEeccccc
Confidence 1 1110 11111 223555 99999998654 3679999998754
No 314
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.50 E-value=2e-05 Score=79.75 Aligned_cols=222 Identities=10% Similarity=0.079 Sum_probs=133.1
Q ss_pred CCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEE-EEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCc
Q 009569 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT-VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVG 361 (532)
Q Consensus 283 ~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~-l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 361 (532)
++..++.++.+|.+..+|..+++.. ...... ..+.+ ... .+..++.+..++.|..+|..+|+.+..+......
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~---W~~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~ 192 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVA---WQTKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPS 192 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCc---ccccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCc
Confidence 3456777888999999999877432 222222 11211 111 2446777788999999999999988777543111
Q ss_pred e-----EEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecC-c-c--C---ceEEEEEee--CCCEEEEEECCCeEEE
Q 009569 362 L-----ISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ-K-T--L---RISDMAITD--DGKRIISICREAAILL 427 (532)
Q Consensus 362 i-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~-~--~---~v~~~~~s~--~~~~l~~~~~dg~I~i 427 (532)
+ .+... .+..++.++.+|.+..+|..++...-.... . . . ....+..+| .+..+++++.+|.+..
T Consensus 193 ~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~a 270 (394)
T PRK11138 193 LTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVA 270 (394)
T ss_pred ccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEE
Confidence 1 11111 234577788889999999876554221110 0 0 0 011111122 3456777888999999
Q ss_pred EECCCCceeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCC--CCcEEEEE
Q 009569 428 LDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF--EQAFIASG 505 (532)
Q Consensus 428 wd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~--d~~~l~sg 505 (532)
+|..+++............+.. ++..+++++.+|.+..+|..++ +.+-......... +.+| .+..|+.+
T Consensus 271 ld~~tG~~~W~~~~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG-~~~W~~~~~~~~~------~~sp~v~~g~l~v~ 341 (394)
T PRK11138 271 LDLRSGQIVWKREYGSVNDFAV--DGGRIYLVDQNDRVYALDTRGG-VELWSQSDLLHRL------LTAPVLYNGYLVVG 341 (394)
T ss_pred EECCCCCEEEeecCCCccCcEE--ECCEEEEEcCCCeEEEEECCCC-cEEEcccccCCCc------ccCCEEECCEEEEE
Confidence 9999987443322222222222 4667888888999999999887 5443322111110 0011 24577889
Q ss_pred eCCCcEEEEeCCCCCc
Q 009569 506 SEDSQVNIFLSFSPFA 521 (532)
Q Consensus 506 s~dg~i~iw~~~~~~~ 521 (532)
+.||.|++.|..+|+.
T Consensus 342 ~~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 342 DSEGYLHWINREDGRF 357 (394)
T ss_pred eCCCEEEEEECCCCCE
Confidence 9999999999999864
No 315
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.49 E-value=1.9e-07 Score=53.58 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHhhhc
Q 009569 64 SEFIKIITRALYSLGYDKSGALLEEES 90 (532)
Q Consensus 64 ~e~~~lI~q~L~e~G~~~sa~~L~~Es 90 (532)
+++++||++||.++||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999996
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=1.3e-05 Score=82.33 Aligned_cols=179 Identities=11% Similarity=0.141 Sum_probs=124.6
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEE
Q 009569 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL 352 (532)
Q Consensus 273 ~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 352 (532)
+.++|++++ +++|+.|+.+|.|++++.... . .+...|... ..+|.++++|+.||+|.|-.+-+.+..
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~----~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGN----P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCc----c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccc
Confidence 445566663 678999999999999998732 1 233344443 557999999999999999999888877
Q ss_pred EEeeccCCceEEEEEeeC-----CCeEEEEeCCCcEEEEECC--CCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeE
Q 009569 353 HVYEKTGVGLISCGWFLD-----GGGIFAGMTDKSICLWDLD--GRELESWKGQKTLRISDMAITDDGKRIISICREAAI 425 (532)
Q Consensus 353 ~~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I 425 (532)
.++. -..++.+++++|+ .+.+++|+..| +.++.-+ +...........++|.++.|. |++||-++.+ -|
T Consensus 107 ~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~-Gv 181 (846)
T KOG2066|consen 107 TQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDD-GV 181 (846)
T ss_pred eeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCC-Cc
Confidence 7665 3557899999997 67899999888 7776543 222222233444589999997 6688887655 58
Q ss_pred EEEECCCCc-eeeeec-------CCceeEEEEcCCCCEEEEEecCCeEEEEecC
Q 009569 426 LLLDREANF-ERWIEE-------EEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (532)
Q Consensus 426 ~iwd~~~~~-~~~~~~-------~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~ 471 (532)
++||+.+.+ ...+.. ..-...+.|.++.+ |+.|= ..+|+|..++
T Consensus 182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGW-GDSVKICSIK 233 (846)
T ss_pred EEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEec-CCeEEEEEEe
Confidence 999998877 222211 11234577876654 44443 4468888887
No 317
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.47 E-value=6.6e-07 Score=57.32 Aligned_cols=38 Identities=26% Similarity=0.646 Sum_probs=35.9
Q ss_pred EEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEE
Q 009569 308 SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (532)
Q Consensus 308 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 345 (532)
+++..+.+|.+.|.+++|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999999999999999997
No 318
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.46 E-value=9e-05 Score=75.05 Aligned_cols=219 Identities=16% Similarity=0.195 Sum_probs=130.5
Q ss_pred CCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeE-EEEeCC--CCCEEEEeeCCCcEEEEECCCCcEEEEeeccCC
Q 009569 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVF-TVSWSP--NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGV 360 (532)
Q Consensus 284 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~-~l~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 360 (532)
+..++.++.++.+..+|..++.. ..........+. ...-+| .+..++.++.++.+..+|..+|+.+........
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~---~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~ 236 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAV---KWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQP 236 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCE---eeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccC
Confidence 34566677889999999987743 233221111000 000112 133567778899999999999987655432110
Q ss_pred -------ceEEEEEee--CCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECC
Q 009569 361 -------GLISCGWFL--DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDRE 431 (532)
Q Consensus 361 -------~i~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~ 431 (532)
....+..+| .+..+++++.+|.+..+|..+++.. |..... ....+. .++..++.++.+|.+..+|..
T Consensus 237 ~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~-W~~~~~-~~~~~~--~~~~~vy~~~~~g~l~ald~~ 312 (394)
T PRK11138 237 TGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV-WKREYG-SVNDFA--VDGGRIYLVDQNDRVYALDTR 312 (394)
T ss_pred CCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE-EeecCC-CccCcE--EECCEEEEEcCCCeEEEEECC
Confidence 001111122 3556777788999999999876543 222111 122222 246678888899999999999
Q ss_pred CCceeeeec---CCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCC
Q 009569 432 ANFERWIEE---EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED 508 (532)
Q Consensus 432 ~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~d 508 (532)
+++...... .....+..+ .+.+|++++.+|.++++|..++ +.+.++......... .... .+..|+.++.|
T Consensus 313 tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG-~~~~~~~~~~~~~~s-~P~~---~~~~l~v~t~~ 385 (394)
T PRK11138 313 GGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDG-RFVAQQKVDSSGFLS-EPVV---ADDKLLIQARD 385 (394)
T ss_pred CCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCC-CEEEEEEcCCCccee-CCEE---ECCEEEEEeCC
Confidence 887333211 111222222 2567888899999999999998 777766543332211 1111 24478888999
Q ss_pred CcEEEEeC
Q 009569 509 SQVNIFLS 516 (532)
Q Consensus 509 g~i~iw~~ 516 (532)
|.|+.++.
T Consensus 386 G~l~~~~~ 393 (394)
T PRK11138 386 GTVYAITR 393 (394)
T ss_pred ceEEEEeC
Confidence 99998864
No 319
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.41 E-value=6.6e-08 Score=96.19 Aligned_cols=197 Identities=18% Similarity=0.217 Sum_probs=131.3
Q ss_pred ccEEEEEEccCC--CEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCC-CCCEEEEee----CCCcEEEEE
Q 009569 273 DEVWFLQFSHDG--KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCG----QEEAIRRWD 345 (532)
Q Consensus 273 ~~V~~v~~s~~g--~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~----~dg~i~iwd 345 (532)
..+.|++++.+. .+++.|..+|.|.+-.+..... .......+|..++++++|++ |.+.||.|- .|..+.|||
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCccc-ccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 456677776633 5788999999999988874321 22345567888999999998 445666653 256799999
Q ss_pred CCCC--cEE--EEeec-cCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEee-CCCEEEEE
Q 009569 346 VNSG--ECL--HVYEK-TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD-DGKRIISI 419 (532)
Q Consensus 346 ~~~~--~~~--~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~ 419 (532)
+.++ .+. ..|.. ......+++|..+.+.+++|.....+.++|++......... .+..+..+.++| .++++++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv-nTk~vqG~tVdp~~~nY~cs- 213 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV-NTKYVQGITVDPFSPNYFCS- 213 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh-hhhhcccceecCCCCCceec-
Confidence 9876 221 12222 33455688999899999999999999999998433222221 122577788888 6666666
Q ss_pred ECCCeEEEEE-CCCCc---eeeeecC----CceeEEEEcCCCC-EEEEEe-cCCeEEEEecCC
Q 009569 420 CREAAILLLD-REANF---ERWIEEE----EVITSFSLSKDNK-YLLVNL-INQEIHLWSIES 472 (532)
Q Consensus 420 ~~dg~I~iwd-~~~~~---~~~~~~~----~~i~~~~~sp~~~-~l~~~~-~dg~i~iwd~~~ 472 (532)
..||.|.+|| .++-+ ....... ..+..++|+|... .+++.. ..++|+++|+..
T Consensus 214 ~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 214 NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 4599999999 44333 1111122 2489999999542 344443 456899999864
No 320
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=9.1e-07 Score=81.92 Aligned_cols=129 Identities=17% Similarity=0.238 Sum_probs=100.6
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCC--eeEEEEEeecCCCCeEEEEeCC-CCCEEEEeeCCCcEEEEECC
Q 009569 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG--QVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVN 347 (532)
Q Consensus 271 h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~ 347 (532)
.++.|.++.|.-.++++..|..+|.|..+|++... ...+...+ -|.+.|+++..-. ++.+|++.+.+|+|++||.+
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 45678999999989999999999999999998542 12233333 4889999988766 78899999999999999998
Q ss_pred CCcE---EEEeeccCCceE--EEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCc
Q 009569 348 SGEC---LHVYEKTGVGLI--SCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK 400 (532)
Q Consensus 348 ~~~~---~~~~~~~~~~i~--~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 400 (532)
--++ +..+.+|-..-. -+...+....+++++.|...+||.++.+.+.......
T Consensus 330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred hhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 7777 888888843322 2334566778889999999999999987776655443
No 321
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.39 E-value=0.00057 Score=68.71 Aligned_cols=113 Identities=12% Similarity=0.179 Sum_probs=83.5
Q ss_pred ceEEEEEee-CCCeEEEE----eCCCc----EEEEECCCCeEEE---eecCccCceEEEEEeeCCCEEEEEECCCeEEEE
Q 009569 361 GLISCGWFL-DGGGIFAG----MTDKS----ICLWDLDGRELES---WKGQKTLRISDMAITDDGKRIISICREAAILLL 428 (532)
Q Consensus 361 ~i~~~~~~~-~~~~l~~~----~~dg~----i~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iw 428 (532)
...++.|+- +...+.+- +.+|. -++|++...++.. ..-.....|.+++++|+...++.|+.||.|.+|
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 345667775 34444442 23443 3456665433322 122233489999999999999999999999999
Q ss_pred ECCCCceeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 009569 429 DREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (532)
Q Consensus 429 d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~ 473 (532)
|...+........-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 287 D~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 287 DTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 998887666666777899999999999999999999999998754
No 322
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.37 E-value=8.5e-05 Score=79.94 Aligned_cols=199 Identities=13% Similarity=0.121 Sum_probs=133.4
Q ss_pred CCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECC-----CC
Q 009569 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD-----GR 391 (532)
Q Consensus 317 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-----~~ 391 (532)
...|.++.|..+...++.+...|.|.+-|..+.... ....-..+|.+++|+||+..++..+..+++.+-+-. ..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 468999999999999999999999999998776532 333346779999999999999999888887764331 01
Q ss_pred eE-------------------EEeecC--------------------ccCceEEEEEeeCCCEEEEEE----CC-CeEEE
Q 009569 392 EL-------------------ESWKGQ--------------------KTLRISDMAITDDGKRIISIC----RE-AAILL 427 (532)
Q Consensus 392 ~~-------------------~~~~~~--------------------~~~~v~~~~~s~~~~~l~~~~----~d-g~I~i 427 (532)
.+ ..+.+. ....-+.|.|--||.++++.. .+ ..|++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 11 111100 001224589999999998843 33 78999
Q ss_pred EECCCCc--eeeeecCCceeEEEEcCCCCEEEEEe---cCCeEEEEecCCCCcceeEE--eccccceEEEEEccCCCCCc
Q 009569 428 LDREANF--ERWIEEEEVITSFSLSKDNKYLLVNL---INQEIHLWSIESDPKLVSRY--KGHKRARFVIRSCFGGFEQA 500 (532)
Q Consensus 428 wd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~i~~~~~s~d~~ 500 (532)
||.+ +. ..-....+.-.+++|-|.|..+++-. +|+.|.+|.-..- .-..| .-..+...+..++| +.++.
T Consensus 227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL--~hg~f~l~~p~de~~ve~L~W-ns~sd 302 (1265)
T KOG1920|consen 227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL--RHGEFVLPFPLDEKEVEELAW-NSNSD 302 (1265)
T ss_pred eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCc--cccccccCCcccccchheeee-cCCCC
Confidence 9988 43 23333444567899999999998763 4567888885432 22222 11122222455777 77888
Q ss_pred EEEE---EeCCCcEEEEeCCCCC
Q 009569 501 FIAS---GSEDSQVNIFLSFSPF 520 (532)
Q Consensus 501 ~l~s---gs~dg~i~iw~~~~~~ 520 (532)
.|++ ..+...|++|-+.+-.
T Consensus 303 iLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ceeeeecccccceEEEEEecCeE
Confidence 8887 4455569999987753
No 323
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.4e-05 Score=74.23 Aligned_cols=213 Identities=14% Similarity=0.137 Sum_probs=124.6
Q ss_pred EEEEEeecCCCCeEEEEeCCCCC-EEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCC-CeEEEEeCCCcEEE
Q 009569 308 SLKHRLSGHRKPVFTVSWSPNDH-QLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICL 385 (532)
Q Consensus 308 ~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i 385 (532)
+....+..|...|.+++|||..+ ++..++.+..|+|.|+++..++..+..+ ..+++++|.-|. ++++.|..+|.|.+
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence 33446677888999999999777 7888899999999999999999888877 779999998754 56777889999999
Q ss_pred EECCCCe--EEEeec-CccCceEEEEEe------eCCCEEEEEECCCeEEEEECCCCc-----eeeeecCCceeEEEEcC
Q 009569 386 WDLDGRE--LESWKG-QKTLRISDMAIT------DDGKRIISICREAAILLLDREANF-----ERWIEEEEVITSFSLSK 451 (532)
Q Consensus 386 wd~~~~~--~~~~~~-~~~~~v~~~~~s------~~~~~l~~~~~dg~I~iwd~~~~~-----~~~~~~~~~i~~~~~sp 451 (532)
||++..+ +..+.. ....+|..++.- +.|.+++....+ ...|.+.... ..-.+..+...++..++
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 9997522 222111 112244444332 234444444433 4455544332 12223355666777777
Q ss_pred CCCEEEEEecCC----e---EEE-EecCCCCcceeEE-ecc----ccceEEEEEccCCCCCcEEE-EEeCCCcEEEEeCC
Q 009569 452 DNKYLLVNLINQ----E---IHL-WSIESDPKLVSRY-KGH----KRARFVIRSCFGGFEQAFIA-SGSEDSQVNIFLSF 517 (532)
Q Consensus 452 ~~~~l~~~~~dg----~---i~i-wd~~~~~~~~~~~-~~~----~~~~~~i~~~~~s~d~~~l~-sgs~dg~i~iw~~~ 517 (532)
..+.++.....+ + |-. .|-..+ .++..- .++ ..........+-.++.++|+ .|++.+.+.+||+.
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG-~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~ 419 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDG-FPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPH 419 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccC-ceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccc
Confidence 666666554321 0 111 111122 122111 111 01111111222245556655 45556789999999
Q ss_pred CCCceee
Q 009569 518 SPFAKKI 524 (532)
Q Consensus 518 ~~~~~~~ 524 (532)
+....+.
T Consensus 420 s~evvQ~ 426 (463)
T KOG1645|consen 420 SFEVVQT 426 (463)
T ss_pred hhheeee
Confidence 8765543
No 324
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2.5e-06 Score=81.77 Aligned_cols=208 Identities=14% Similarity=0.096 Sum_probs=142.4
Q ss_pred cCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCC--C-cEEEEeeccCCceEEEEEeeCCCeEEEEeC-CCcEEEEECCC
Q 009569 315 GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS--G-ECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DKSICLWDLDG 390 (532)
Q Consensus 315 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~--~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 390 (532)
-|...|+.+..+ -.+++++++.||.++.|--.. | +.+..+..|-+.|.+++.+.++..+.+.+. |..++++|+++
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 377777776554 467999999999999998643 1 234456677888999999999999999777 99999999986
Q ss_pred CeEEEeecCcc-CceEEEEEeeCC-C-EEEE-EECCCeEEEEECCCCc----eeeeecCCceeEEEEcCCCCEEEEEecC
Q 009569 391 RELESWKGQKT-LRISDMAITDDG-K-RIIS-ICREAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLIN 462 (532)
Q Consensus 391 ~~~~~~~~~~~-~~v~~~~~s~~~-~-~l~~-~~~dg~I~iwd~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~d 462 (532)
-.......... ....+...++.. . .+++ .-.++.|.++|-.... ....-|..+|.++.+.+.+..+++....
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 44332221111 011122222211 1 2333 3377899999977654 3334688999999999999999999999
Q ss_pred CeEEEEecCCCC-----cceeEEec-------cccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCCceee
Q 009569 463 QEIHLWSIESDP-----KLVSRYKG-------HKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPFAKKI 524 (532)
Q Consensus 463 g~i~iwd~~~~~-----~~~~~~~~-------~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~~~~~ 524 (532)
|.|.-|...... .....++. ........++.| +|++..+.+-+.|.+|+++.+.++++.+.
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Ef-sp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEF-SPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEE-ccccCcccccCcccEEEEEEeccchhhhh
Confidence 999999987310 11111111 011112234566 99999999999999999999999876543
No 325
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.33 E-value=0.0002 Score=72.36 Aligned_cols=221 Identities=14% Similarity=0.135 Sum_probs=118.8
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCC
Q 009569 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (532)
Q Consensus 270 ~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 349 (532)
...-....+.++|+|++++.+ .||.-.|+..... +.... +......|.+.+ .+|+-..+++|.|+.--..
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~---r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW---RNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT---EEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC---ccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCcc
Confidence 344457789999999999985 5788888874321 22221 233467888855 4666666888999633222
Q ss_pred cEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEE
Q 009569 350 ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429 (532)
Q Consensus 350 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd 429 (532)
+....++.. ..+..+ .+ |..|...+.+ .|.+||..++.+....... .|..+.|+++|.+++..+.+ .+.+++
T Consensus 100 ~~~k~i~~~-~~~~~I--f~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 100 EVVKSIKLP-FSVEKI--FG-GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILK 171 (443)
T ss_dssp -TT-----S-S-EEEE--E--SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred ccceEEcCC-cccceE--Ec-CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence 222233321 123333 22 7777777654 8999999987776666555 48999999999999998755 777777
Q ss_pred CCCC------------ceeeeec-CCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCC
Q 009569 430 REAN------------FERWIEE-EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGG 496 (532)
Q Consensus 430 ~~~~------------~~~~~~~-~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s 496 (532)
.... ....... ...|.+..|..+ .++-.+.. .|+. +.++ ....+..-..+.+.+.. .
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~G--e~~~i~~ld~~~yllgy---~ 241 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNG--ETGIIAHLDKPLYLLGY---L 241 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETT--EEEEEEE-SS--EEEEE---E
T ss_pred ecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcC--CcceEEEcCCceEEEEE---E
Confidence 6555 3333334 778999999866 44444433 6666 3344 23334433556666554 4
Q ss_pred CCCcEEEEEeCCCcEEEEeCCC
Q 009569 497 FEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 497 ~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
+..+.++....|+.|..+.+..
T Consensus 242 ~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 242 PKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp TTTTEEEEE-TT--EEEEE--H
T ss_pred ccCCEEEEEECCCCEEEEEECH
Confidence 5567788888888888887754
No 326
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.33 E-value=0.00014 Score=74.75 Aligned_cols=227 Identities=14% Similarity=0.092 Sum_probs=137.4
Q ss_pred EEEEeCCCeEEEEEeecCCeeEEEEEeecCC----------CCeE-------EEEe--------C-----CCCCEEEEee
Q 009569 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHR----------KPVF-------TVSW--------S-----PNDHQLLTCG 336 (532)
Q Consensus 287 las~s~dg~i~iwd~~~~~~~~~~~~~~~h~----------~~v~-------~l~~--------s-----~~~~~l~s~~ 336 (532)
+.+|+..|.++|+-+.+...+..+-.|.... ..|. .+.| | .||++|+.-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 5678888888888887765544443332110 0010 0111 1 1667777765
Q ss_pred C-CCcEEEEECCCCcEEEEeecc-CCceEEEEE-------------------eeCCCeEEEE-eCCCcEEEEECCCCeEE
Q 009569 337 Q-EEAIRRWDVNSGECLHVYEKT-GVGLISCGW-------------------FLDGGGIFAG-MTDKSICLWDLDGRELE 394 (532)
Q Consensus 337 ~-dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~-------------------~~~~~~l~~~-~~dg~i~iwd~~~~~~~ 394 (532)
. +..|-..+++..++.++++.. ...+..+++ .|||+.+... -..+.+.+.|.++.++.
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~ 228 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVA 228 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEE
Confidence 4 456666777666655444321 122222332 2344433221 22345666777665443
Q ss_pred EeecCccCceEEEEEeeCCCEEEEEE----------------------------------------CCCeEEEEECCC--
Q 009569 395 SWKGQKTLRISDMAITDDGKRIISIC----------------------------------------REAAILLLDREA-- 432 (532)
Q Consensus 395 ~~~~~~~~~v~~~~~s~~~~~l~~~~----------------------------------------~dg~I~iwd~~~-- 432 (532)
....... ....++++|+|+++++.+ .++.|.++|.++
T Consensus 229 ~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~ 307 (635)
T PRK02888 229 WQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAA 307 (635)
T ss_pred EEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccc
Confidence 3322222 446678888888877765 124588888887
Q ss_pred --C-c-eeeeecCCceeEEEEcCCCCEEEEEec-CCeEEEEecCCCCc-----------ceeEEeccccceEEEEEccCC
Q 009569 433 --N-F-ERWIEEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDPK-----------LVSRYKGHKRARFVIRSCFGG 496 (532)
Q Consensus 433 --~-~-~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~i~iwd~~~~~~-----------~~~~~~~~~~~~~~i~~~~~s 496 (532)
. . ...+.-......+.++|||+++++++. ++++.|+|+.+... .+.....-..+ +...| .
T Consensus 308 ~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP---LHTaF-D 383 (635)
T PRK02888 308 NAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP---LHTAF-D 383 (635)
T ss_pred cCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc---ceEEE-C
Confidence 2 3 555666777889999999999887765 88999999987522 23333333333 45567 8
Q ss_pred CCCcEEEEEeCCCcEEEEeCCC
Q 009569 497 FEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 497 ~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
++|....|.--|..|..|++..
T Consensus 384 g~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 384 GRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCCEEEeEeecceeEEEehHH
Confidence 8888888888999999999876
No 327
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.31 E-value=2.9e-05 Score=78.17 Aligned_cols=194 Identities=18% Similarity=0.146 Sum_probs=129.2
Q ss_pred eeEEcccccccEEEEEEccCCCEEEEEe---CC-CeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeC-C
Q 009569 264 TLQILEAHSDEVWFLQFSHDGKYLASSS---KD-QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-E 338 (532)
Q Consensus 264 ~~~~l~~h~~~V~~v~~s~~g~~las~s---~d-g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-d 338 (532)
..+.+..-...+..-+|+|++..++..+ .. ..+.++++.++... .+..+.++. ...+|+|||++|+.+.. |
T Consensus 184 ~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~-~i~~~~g~~---~~P~fspDG~~l~f~~~rd 259 (425)
T COG0823 184 NQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP-VILNFNGNN---GAPAFSPDGSKLAFSSSRD 259 (425)
T ss_pred ceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc-eeeccCCcc---CCccCCCCCCEEEEEECCC
Confidence 3344444556777889999998766542 23 46899999876543 333444444 35689999988776654 5
Q ss_pred C--cEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCC-C--cEEEEECCCCeEEEeecCccCceEEEEEeeCC
Q 009569 339 E--AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD-K--SICLWDLDGRELESWKGQKTLRISDMAITDDG 413 (532)
Q Consensus 339 g--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 413 (532)
| .|.++|+.++... .+....+.-+.-.|+|||+.++..+.. | .|.++|.++............. ..-.|+|||
T Consensus 260 g~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~-~~p~~SpdG 337 (425)
T COG0823 260 GSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN-SNPVWSPDG 337 (425)
T ss_pred CCccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC-cCccCCCCC
Confidence 5 5777788776633 354444444467899999998877643 3 5788888887765555443322 277899999
Q ss_pred CEEEEEECC-Ce--EEEEECCCCc-eeeeecCCceeEEEEcCCCCEEEEEecCC
Q 009569 414 KRIISICRE-AA--ILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQ 463 (532)
Q Consensus 414 ~~l~~~~~d-g~--I~iwd~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg 463 (532)
++|+..+.. |. |.+.|+.+.. ............-+|.|+++.+...+..+
T Consensus 338 ~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 338 DKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred CEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCC
Confidence 999887743 44 6677776655 45555555666778899998877655433
No 328
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.29 E-value=0.00096 Score=63.67 Aligned_cols=239 Identities=13% Similarity=0.117 Sum_probs=140.0
Q ss_pred EEEEccCCCEEEEEe----------CCCeEEEEEeecCCeeEEEEEeec-CCC----CeEEEEeCCCCCEEEEeeC--CC
Q 009569 277 FLQFSHDGKYLASSS----------KDQSAIIWEVKEDGQVSLKHRLSG-HRK----PVFTVSWSPNDHQLLTCGQ--EE 339 (532)
Q Consensus 277 ~v~~s~~g~~las~s----------~dg~i~iwd~~~~~~~~~~~~~~~-h~~----~v~~l~~s~~~~~l~s~~~--dg 339 (532)
.+..+|+++.+++++ ..-.|.+||..+-... ....+.. |.. ......++.|+++++.... .-
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~-~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPT-GEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEE-EEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCccc-ceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 366799999888653 2346899998864221 1122222 111 2234678889998887654 45
Q ss_pred cEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECC--CCeEEE---ee-cCccCceEEEEEeeCC
Q 009569 340 AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD--GRELES---WK-GQKTLRISDMAITDDG 413 (532)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~---~~-~~~~~~v~~~~~s~~~ 413 (532)
+|.|.|+..++.+..+.... +..+--. ..+.|.+-|.||.+....+. ++.... .+ .....-+..-++...+
T Consensus 119 SVtVVDl~~~kvv~ei~~PG--C~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~ 195 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDTPG--CWLIYPS-GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG 195 (342)
T ss_dssp EEEEEETTTTEEEEEEEGTS--EEEEEEE-ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred eEEEEECCCCceeeeecCCC--EEEEEec-CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence 79999999999888776443 2222222 33568888899999888886 232211 11 1111123344555566
Q ss_pred CEEEEEECCCeEEEEECCCCceeeee--------------cCCceeEEEEcCCCCEEEEEecCC----------eEEEEe
Q 009569 414 KRIISICREAAILLLDREANFERWIE--------------EEEVITSFSLSKDNKYLLVNLINQ----------EIHLWS 469 (532)
Q Consensus 414 ~~l~~~~~dg~I~iwd~~~~~~~~~~--------------~~~~i~~~~~sp~~~~l~~~~~dg----------~i~iwd 469 (532)
..++..+.+|.|+-.|+......+.. ..+...-+++++..+.|++-...| .|.++|
T Consensus 196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D 275 (342)
T PF06433_consen 196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD 275 (342)
T ss_dssp TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence 67777899999999998876622211 012234578887666665543221 488889
Q ss_pred cCCCCcceeEEeccccceEEEEEccCCCCCcEEEEE-eCCCcEEEEeCCCCCcee
Q 009569 470 IESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG-SEDSQVNIFLSFSPFAKK 523 (532)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sg-s~dg~i~iw~~~~~~~~~ 523 (532)
+.+. +.+.++.... .+..+.+.- .+..+|++. ..++.+.+||..+|+...
T Consensus 276 ~~t~-krv~Ri~l~~-~~~Si~Vsq--d~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 276 LKTH-KRVARIPLEH-PIDSIAVSQ--DDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp TTTT-EEEEEEEEEE-EESEEEEES--SSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred CCCC-eEEEEEeCCC-ccceEEEcc--CCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 9988 8888877432 222344432 334466554 458999999999987544
No 329
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=3.6e-05 Score=79.21 Aligned_cols=142 Identities=16% Similarity=0.213 Sum_probs=98.2
Q ss_pred ccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCC-----CCEEEEeeCCCcEEEEECCCC--cEEE
Q 009569 281 SHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN-----DHQLLTCGQEEAIRRWDVNSG--ECLH 353 (532)
Q Consensus 281 s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~-----~~~l~s~~~dg~i~iwd~~~~--~~~~ 353 (532)
..+|.|++|||.||+|.|-.+.++... .++ ....++.+++++|+ .+.+++|+..| +.++.-.-. +...
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~---~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v 154 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEI---TQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV 154 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccc---eeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce
Confidence 447999999999999999988766432 222 34578999999997 56899999888 777654211 1111
Q ss_pred EeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCc------eEEEEEeeCCCEEEEEECCCeEEE
Q 009569 354 VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLR------ISDMAITDDGKRIISICREAAILL 427 (532)
Q Consensus 354 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------v~~~~~s~~~~~l~~~~~dg~I~i 427 (532)
.+....++|.++.|. |++++-++.+| |++||+..+............ ...+.|.++. .++.| ...+|+|
T Consensus 155 ~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIG-W~d~v~i 229 (846)
T KOG2066|consen 155 VLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIG-WGDSVKI 229 (846)
T ss_pred eeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEe-cCCeEEE
Confidence 345568899999995 88999888777 899999876654444332222 3456676654 44444 4457888
Q ss_pred EECCC
Q 009569 428 LDREA 432 (532)
Q Consensus 428 wd~~~ 432 (532)
..++.
T Consensus 230 ~~I~~ 234 (846)
T KOG2066|consen 230 CSIKK 234 (846)
T ss_pred EEEec
Confidence 88773
No 330
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.28 E-value=2.9e-05 Score=80.03 Aligned_cols=98 Identities=13% Similarity=0.242 Sum_probs=73.4
Q ss_pred ccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCC
Q 009569 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317 (532)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (532)
.|++...+.+.+|-+..- |..-+ +.. -.+++++|+|..-.||.|-.-|.+.+|...+. +.......|.
T Consensus 34 ~fS~er~GSVtIfadtGE-----Pqr~V-t~P---~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~---e~htv~~th~ 101 (1416)
T KOG3617|consen 34 SFSPERGGSVTIFADTGE-----PQRDV-TYP---VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT---ETHTVVETHP 101 (1416)
T ss_pred EecCCCCceEEEEecCCC-----CCccc-ccc---eehhhhccChHHHHHhhccccceeEEEecCCc---eeeeeccCCC
Confidence 356666777888765532 11100 111 12567999999999999999999999998754 2334445799
Q ss_pred CCeEEEEeCCCCCEEEEeeCCCcEEEEECC
Q 009569 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVN 347 (532)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 347 (532)
.+|..+.||++|..++++..-|.|.+|...
T Consensus 102 a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 102 APIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 999999999999999999999999999876
No 331
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.27 E-value=0.0006 Score=61.38 Aligned_cols=235 Identities=12% Similarity=0.092 Sum_probs=128.0
Q ss_pred CCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCce
Q 009569 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL 362 (532)
Q Consensus 283 ~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i 362 (532)
-|++++.|...|.+++.+.+++.+. ..+.....-=......+++..+..++.|++.+..|.++..++...+...+..
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~---w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f 138 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQI---WNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTF 138 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhhe---eeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCcee
Confidence 4678999999999999999988543 2222221111233456789999999999999999999999998887666656
Q ss_pred EEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEe-ecCccCceEE--EEEeeCCCEEEEEECCCeEEEEECCCCceeeee
Q 009569 363 ISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW-KGQKTLRISD--MAITDDGKRIISICREAAILLLDREANFERWIE 439 (532)
Q Consensus 363 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~--~~~s~~~~~l~~~~~dg~I~iwd~~~~~~~~~~ 439 (532)
.+-+..|-...++.+...|.+.--..+......+ ......+|.+ +.. +..+..++-||.+.-+|-...+.....
T Consensus 139 ~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~~sG~qvwr~~ 215 (354)
T KOG4649|consen 139 VSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFDESGRQVWRPA 215 (354)
T ss_pred ccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceec---cceEEEEEeccEEEEEcCCCcEEEeec
Confidence 6666777444555555566665555443322111 1111112211 111 334555566666666663222222222
Q ss_pred cCCceeE-EEEc-CCCCEEEEEecCCe--------EEEEecCCCCcceeEEeccccceEEEEEccCCCC---CcEEEEEe
Q 009569 440 EEEVITS-FSLS-KDNKYLLVNLINQE--------IHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE---QAFIASGS 506 (532)
Q Consensus 440 ~~~~i~~-~~~s-p~~~~l~~~~~dg~--------i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d---~~~l~sgs 506 (532)
..++|.. -+.+ |..+.+..+..+.. --+|...++ ...+.+.... +++.+.++. .+++..++
T Consensus 216 t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g-~t~~vy~~p~-----l~F~~h~~~~S~~~ll~~~s 289 (354)
T KOG4649|consen 216 TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSG-TTLHVYLSPK-----LRFDLHSPGISYPKLLRRSS 289 (354)
T ss_pred CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCC-cEEEEEeCcc-----cceeccCCCCcchhhhhhhc
Confidence 2333321 1112 33344444433332 234555444 2222222211 122332332 45788889
Q ss_pred CCCcEEEE---------eCCCCCceeeecccc
Q 009569 507 EDSQVNIF---------LSFSPFAKKIKYTSM 529 (532)
Q Consensus 507 ~dg~i~iw---------~~~~~~~~~~~~~~~ 529 (532)
.||++.|- +-+.++++.+...++
T Consensus 290 ~dgkv~il~~~~sl~~~~s~~g~lq~~~~~el 321 (354)
T KOG4649|consen 290 GDGKVMILMTSKSLAEISSNGGELQNLEAIEL 321 (354)
T ss_pred CCCcEEEEEecccccccccCCCccceEEEeec
Confidence 99999998 555666665554443
No 332
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.26 E-value=0.00023 Score=73.16 Aligned_cols=217 Identities=11% Similarity=0.048 Sum_probs=129.4
Q ss_pred EEccCCCEEEE-EeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCC----CcEEEEECCCCcEEE
Q 009569 279 QFSHDGKYLAS-SSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE----EAIRRWDVNSGECLH 353 (532)
Q Consensus 279 ~~s~~g~~las-~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d----g~i~iwd~~~~~~~~ 353 (532)
-++|||+.+.. .-..+.+.+.|..+. +...++.-- +....+.++|+|+++++++.+ .++...+..+...+.
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etm---eV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~v 274 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETM---EVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVV 274 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccc---eEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEE
Confidence 35667765533 334466677776643 333333322 234567899999999888643 234333333222222
Q ss_pred EeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCC-----CeEEEeecCccCceEEEEEeeCCCEEEEEE-CCCeEEE
Q 009569 354 VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-----RELESWKGQKTLRISDMAITDDGKRIISIC-REAAILL 427 (532)
Q Consensus 354 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~I~i 427 (532)
.+.... + ..+.++|++...+ ++.|.+.|.++ ..+........ ....+.++|||+++++++ .+.+|.|
T Consensus 275 vfni~~--i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGK-sPHGV~vSPDGkylyVanklS~tVSV 347 (635)
T PRK02888 275 VFNIAR--I--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPK-NPHGVNTSPDGKYFIANGKLSPTVTV 347 (635)
T ss_pred EEchHH--H--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCC-CccceEECCCCCEEEEeCCCCCcEEE
Confidence 222111 0 1234577776663 67899999987 34444443333 689999999999888776 5899999
Q ss_pred EECCCCcee-------------eeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCC---------CcceeEEecccc
Q 009569 428 LDREANFER-------------WIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD---------PKLVSRYKGHKR 485 (532)
Q Consensus 428 wd~~~~~~~-------------~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~~~~~ 485 (532)
+|+.+.... ...-.......+|+++|....+-.-|..|..||+... ...+.++..|-+
T Consensus 348 IDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~ 427 (635)
T PRK02888 348 IDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQ 427 (635)
T ss_pred EEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCc
Confidence 999875411 1111233456789999988778888999999998761 134555554444
Q ss_pred ceEEEE--EccCCCCCcEEEEEe
Q 009569 486 ARFVIR--SCFGGFEQAFIASGS 506 (532)
Q Consensus 486 ~~~~i~--~~~~s~d~~~l~sgs 506 (532)
+..... .---.+||++|++..
T Consensus 428 pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 428 PGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred cceeeecCCCcCCCCCCEEEEcc
Confidence 322211 011156778777764
No 333
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=1.7e-05 Score=81.72 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=85.5
Q ss_pred EEEEEccCCCEEEEEe----CCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcE
Q 009569 276 WFLQFSHDGKYLASSS----KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351 (532)
Q Consensus 276 ~~v~~s~~g~~las~s----~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 351 (532)
+-..|+|...++|+++ ..|.|.||--. |. ...-.+.+-| +++++|+|..-.|+.|-.-|.+.+|...+.+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfadt-GE-Pqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFADT-GE-PQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEecC-CC-CCccccccee---hhhhccChHHHHHhhccccceeEEEecCCcee
Confidence 4457899888888876 35788887533 22 1111222222 45799999988889998899999999988877
Q ss_pred EEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECC
Q 009569 352 LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD 389 (532)
Q Consensus 352 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 389 (532)
-.....|..+|..+.|+++|..++++..-|.+.+|...
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 77777899999999999999999999999999999875
No 334
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.00012 Score=76.03 Aligned_cols=189 Identities=15% Similarity=0.190 Sum_probs=121.9
Q ss_pred EeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCC-CeEEEEeCCC-----cEEEEECCC----C--
Q 009569 324 SWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDK-----SICLWDLDG----R-- 391 (532)
Q Consensus 324 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg-----~i~iwd~~~----~-- 391 (532)
+|++.+..++.|+.+|.|.+.+- .-+.++.++.+...+...-|.-++ +++++-+.|+ .+++||++. .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 46778889999999999988873 344557777776663333344344 5666655443 599999952 2
Q ss_pred eEE---Eeec----CccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc------eeeeecCCceeEEEEcCCCCEEEE
Q 009569 392 ELE---SWKG----QKTLRISDMAITDDGKRIISICREAAILLLDREANF------ERWIEEEEVITSFSLSKDNKYLLV 458 (532)
Q Consensus 392 ~~~---~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~------~~~~~~~~~i~~~~~sp~~~~l~~ 458 (532)
.+. ...+ ....++.+++++.+-+.+|+|-.+|.|..+.-+-.+ ........+||.+.+..+++.++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 111 2222 123478999999999999999999999998643222 223345789999999999987444
Q ss_pred EecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCC-cEEEEEeCCCcEEEEeCCC
Q 009569 459 NLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQ-AFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 459 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~-~~l~sgs~dg~i~iw~~~~ 518 (532)
......|.+|.+.........+..|..+ ..++.| ++.. ++++++ +..+++|+...
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~--lnCss~-~~~t~qfIca~--~e~l~fY~sd~ 244 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGIS--LNCSSF-SDGTYQFICAG--SEFLYFYDSDG 244 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCcc--ceeeec-CCCCccEEEec--CceEEEEcCCC
Confidence 4446679999998653123335555444 233444 4333 345444 34677777664
No 335
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=2e-05 Score=73.99 Aligned_cols=122 Identities=14% Similarity=0.207 Sum_probs=96.5
Q ss_pred chHHHHHHHHHHHHhcChHHHHHHHhhhcCcc-cCC----HHHHHHHHHHhcCChHHHHHHhhcCCCCChhHHHHHHHHH
Q 009569 62 KKSEFIKIITRALYSLGYDKSGALLEEESGIP-MHS----SVVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSASFLI 136 (532)
Q Consensus 62 ~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~i~-~~~----~~~~~~~~~i~~G~w~~~~~~l~~l~~~~~~~~~~~~~~i 136 (532)
.+.-+.|+|.-||--+||..||..|.++|++. +-. ..+..+++++++|+...|+.-.+.-+..-...-..+-|.+
T Consensus 114 ~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~l 193 (389)
T KOG0396|consen 114 PRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccchhhhHH
Confidence 47889999999999999999999999999986 222 2577789999999988888665533221112223467889
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhccccCcc-ChhhHHHhhhccccCCc
Q 009569 137 LEQKFLELLRRDKVSAALNSLRSEIVPLQI-NMSRVHELASCIISPSK 183 (532)
Q Consensus 137 ~~q~~lelle~~~~~~a~~~L~~~l~pl~~-~~~~~~~l~~~l~~~~~ 183 (532)
+.|+|.||++.+++.+|+.+.++++.|..- ..+++.....++.++..
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~ 241 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKY 241 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccc
Confidence 999999999999999999999999999765 55677777777776643
No 336
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=98.18 E-value=2.6e-06 Score=52.56 Aligned_cols=32 Identities=31% Similarity=0.589 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHHhcChHHHHHHHhhhcCcc
Q 009569 62 KKSEFIKIITRALYSLGYDKSGALLEEESGIP 93 (532)
Q Consensus 62 ~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~i~ 93 (532)
.+.+++++|+|||...||..|+.+|++|+++.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 46799999999999999999999999999874
No 337
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.16 E-value=0.0038 Score=63.75 Aligned_cols=241 Identities=17% Similarity=0.175 Sum_probs=133.9
Q ss_pred cEEEEEEccCCCEEEEE-eCC----CeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCC---------
Q 009569 274 EVWFLQFSHDGKYLASS-SKD----QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE--------- 339 (532)
Q Consensus 274 ~V~~v~~s~~g~~las~-s~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg--------- 339 (532)
.+....+||+|+++|.+ +.. ..++++|+.++..+ ...+... ....+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l--~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFL--PDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEE--EEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCc--CCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 34467899999998854 333 45999999977322 1222221 123499999988776665433
Q ss_pred --cEEEEECCCCcE--EEEeeccCCc--eEEEEEeeCCCeEEEEeC---C-CcEEEEECCCC-----eEEEeecCccCce
Q 009569 340 --AIRRWDVNSGEC--LHVYEKTGVG--LISCGWFLDGGGIFAGMT---D-KSICLWDLDGR-----ELESWKGQKTLRI 404 (532)
Q Consensus 340 --~i~iwd~~~~~~--~~~~~~~~~~--i~~~~~~~~~~~l~~~~~---d-g~i~iwd~~~~-----~~~~~~~~~~~~v 404 (532)
.|+.|.+.+... ...+...... ...+..++|+++++.... + ..+++.|+... ....+.....+..
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~ 280 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE 280 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence 378888876643 3555544333 567888999999886443 2 35788888764 4444444333233
Q ss_pred EEEEEeeCCCEEEEEE---CCCeEEEEECCCCc-----eeeeecCCc--eeEEEEcCCCCEEEEE-ecCC--eEEEEecC
Q 009569 405 SDMAITDDGKRIISIC---REAAILLLDREANF-----ERWIEEEEV--ITSFSLSKDNKYLLVN-LINQ--EIHLWSIE 471 (532)
Q Consensus 405 ~~~~~s~~~~~l~~~~---~dg~I~iwd~~~~~-----~~~~~~~~~--i~~~~~sp~~~~l~~~-~~dg--~i~iwd~~ 471 (532)
..+... .+.+++... ..+.|...++.+.. ..+..+... +..+.. .+.+|+.. ..++ .|+++++.
T Consensus 281 ~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 281 YYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred EEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence 333333 333444332 34678888887765 245555553 545544 45555554 4444 58899988
Q ss_pred CCCcceeEEeccccc-eEEEEEccCCCCCc-EEEEEeC---CCcEEEEeCCCCCceeee
Q 009569 472 SDPKLVSRYKGHKRA-RFVIRSCFGGFEQA-FIASGSE---DSQVNIFLSFSPFAKKIK 525 (532)
Q Consensus 472 ~~~~~~~~~~~~~~~-~~~i~~~~~s~d~~-~l~sgs~---dg~i~iw~~~~~~~~~~~ 525 (532)
.+ ............ +..+.. .+++. +.++.+. -++++-||+.+++...+.
T Consensus 358 ~~-~~~~~~~~p~~g~v~~~~~---~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 358 DG-KESREIPLPEAGSVSGVSG---DFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp -T-EEEEEEESSSSSEEEEEES----TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred CC-cEEeeecCCcceEEeccCC---CCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 22 344444433322 233322 33333 3333322 467999999998876654
No 338
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.14 E-value=0.00018 Score=72.49 Aligned_cols=159 Identities=20% Similarity=0.217 Sum_probs=106.7
Q ss_pred eecCCCCeEEEEeCCCCCEEEEeeC---C-CcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEe-CCC--cEEE
Q 009569 313 LSGHRKPVFTVSWSPNDHQLLTCGQ---E-EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGM-TDK--SICL 385 (532)
Q Consensus 313 ~~~h~~~v~~l~~s~~~~~l~s~~~---d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg--~i~i 385 (532)
+..-...+..-+|+|++..++..+. . ..+.++++.+++...... ..+.-..-.|+|||+.++.+. .|| .|++
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~ 266 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL 266 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence 3334456777899999987655432 2 469999999887655544 222334568999999887654 455 4777
Q ss_pred EECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECC-C--eEEEEECCCCc-eeeeecCCceeEEEEcCCCCEEEEEec
Q 009569 386 WDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE-A--AILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLI 461 (532)
Q Consensus 386 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~I~iwd~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~ 461 (532)
+|+.++....+..... .-..-.|+|||+.++..+.. | .|.++|..... .........-..-.|+|||++|+..+.
T Consensus 267 ~dl~~~~~~~Lt~~~g-i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 267 MDLDGKNLPRLTNGFG-INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESS 345 (425)
T ss_pred EcCCCCcceecccCCc-cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEec
Confidence 8888877655443332 33467899999998887643 3 48888888776 333333333337889999999987764
Q ss_pred C-Ce--EEEEecCCC
Q 009569 462 N-QE--IHLWSIESD 473 (532)
Q Consensus 462 d-g~--i~iwd~~~~ 473 (532)
. |. |.+.|+.++
T Consensus 346 ~~g~~~i~~~~~~~~ 360 (425)
T COG0823 346 SGGQWDIDKNDLASG 360 (425)
T ss_pred cCCceeeEEeccCCC
Confidence 3 44 677777666
No 339
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.13 E-value=3e-05 Score=77.61 Aligned_cols=116 Identities=16% Similarity=0.209 Sum_probs=83.6
Q ss_pred cEEEEEEcc-CCCEEEE----EeCCCeE----EEEEeecCCeeEEEE-EeecCCCCeEEEEeCCCCCEEEEeeCCCcEEE
Q 009569 274 EVWFLQFSH-DGKYLAS----SSKDQSA----IIWEVKEDGQVSLKH-RLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (532)
Q Consensus 274 ~V~~v~~s~-~g~~las----~s~dg~i----~iwd~~~~~~~~~~~-~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 343 (532)
...++.||. +...+.| .+.+|.+ .+|++..+ +++... +--.....|.+++++|+.+.++.|+.||+|.+
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~-klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRN-KLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecC-ceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 345777887 3444444 2344443 46666643 233322 22356778999999999999999999999999
Q ss_pred EECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCe
Q 009569 344 WDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE 392 (532)
Q Consensus 344 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 392 (532)
||...+... +....-.++.++|+|+|..+++|+..|.+.+||+.-..
T Consensus 286 yD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 286 YDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 998766432 33445667899999999999999999999999986443
No 340
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.0056 Score=61.51 Aligned_cols=241 Identities=10% Similarity=0.076 Sum_probs=154.4
Q ss_pred cEEEEEEccCCCEEEEEe-CCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEE-eeCCCcEEEEECCCCcE
Q 009569 274 EVWFLQFSHDGKYLASSS-KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLT-CGQEEAIRRWDVNSGEC 351 (532)
Q Consensus 274 ~V~~v~~s~~g~~las~s-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~dg~i~iwd~~~~~~ 351 (532)
....+...+++..+.... ....+...+.. .... ......-...-..++.++.+..++. ...+..|.+.|..+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~--~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTV--TQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-ccee--eeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence 455677888885443332 22244444443 2111 1111111133456788888875544 44468999999888777
Q ss_pred EEEeeccCCceEEEEEeeCCCeEEEEeC---CCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEE-CCCeEEE
Q 009569 352 LHVYEKTGVGLISCGWFLDGGGIFAGMT---DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-REAAILL 427 (532)
Q Consensus 352 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~I~i 427 (532)
........ ....++++|+++.+.++.. ++.+.+.|..+..+.........+ ..++++|+|+.++.+. .++.|.+
T Consensus 109 ~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~v 186 (381)
T COG3391 109 LGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSV 186 (381)
T ss_pred eeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEE
Confidence 76665333 5678999999988887765 688999998876665554333224 8999999999766655 7899999
Q ss_pred EECCCCceee------eecCCceeEEEEcCCCCEEEEEecC---CeEEEEecCCCCcceeE-EeccccceEEEEEccCCC
Q 009569 428 LDREANFERW------IEEEEVITSFSLSKDNKYLLVNLIN---QEIHLWSIESDPKLVSR-YKGHKRARFVIRSCFGGF 497 (532)
Q Consensus 428 wd~~~~~~~~------~~~~~~i~~~~~sp~~~~l~~~~~d---g~i~iwd~~~~~~~~~~-~~~~~~~~~~i~~~~~s~ 497 (532)
+|..+..... .........+.++|+|.++.+.... +.+...|..++ ..... +...... ...... +|
T Consensus 187 i~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~-~v~~~~~~~~~~~--~~~v~~-~p 262 (381)
T COG3391 187 IDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG-NVTATDLPVGSGA--PRGVAV-DP 262 (381)
T ss_pred EeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc-eEEEeccccccCC--CCceeE-CC
Confidence 9977765331 3334445679999999977766544 58999998886 33333 2222211 122333 89
Q ss_pred CCcEEEEEeC-CCcEEEEeCCCCCcee
Q 009569 498 EQAFIASGSE-DSQVNIFLSFSPFAKK 523 (532)
Q Consensus 498 d~~~l~sgs~-dg~i~iw~~~~~~~~~ 523 (532)
+|.++.+... .+.+.+-|..+.....
T Consensus 263 ~g~~~yv~~~~~~~V~vid~~~~~v~~ 289 (381)
T COG3391 263 AGKAAYVANSQGGTVSVIDGATDRVVK 289 (381)
T ss_pred CCCEEEEEecCCCeEEEEeCCCCceee
Confidence 9999888844 4788888888765433
No 341
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.09 E-value=1.4e-06 Score=87.08 Aligned_cols=198 Identities=13% Similarity=0.161 Sum_probs=130.0
Q ss_pred CCeEEEEeCCCC--CEEEEeeCCCcEEEEECCCCcE--EEEeeccCCceEEEEEee-CCCeEEEEe----CCCcEEEEEC
Q 009569 318 KPVFTVSWSPND--HQLLTCGQEEAIRRWDVNSGEC--LHVYEKTGVGLISCGWFL-DGGGIFAGM----TDKSICLWDL 388 (532)
Q Consensus 318 ~~v~~l~~s~~~--~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~~-~~~~l~~~~----~dg~i~iwd~ 388 (532)
..+.|++++-+. ..++.|..+|.|.+-.++.... -....++..++++++|++ |.+.|++|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 345666665543 4788888899999988865432 233445677889999998 666777764 3568999999
Q ss_pred CCCe-----EEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc-eeeeecCCceeEEEEcC-CCCEEEEEec
Q 009569 389 DGRE-----LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSK-DNKYLLVNLI 461 (532)
Q Consensus 389 ~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~-~~~~~~~~~i~~~~~sp-~~~~l~~~~~ 461 (532)
.+.- -..+.........+++|..+.+.+++|.....+.++|++... ....-....+..+.++| .+.|+++..
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~- 215 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS- 215 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-
Confidence 7641 112222223356788999899999999999999999998655 22223344677888899 777887776
Q ss_pred CCeEEEEe-cCCCCcceeEEecccc----ceEEEEEccCCCCCcEEEEEe-CCCcEEEEeCCC
Q 009569 462 NQEIHLWS-IESDPKLVSRYKGHKR----ARFVIRSCFGGFEQAFIASGS-EDSQVNIFLSFS 518 (532)
Q Consensus 462 dg~i~iwd-~~~~~~~~~~~~~~~~----~~~~i~~~~~s~d~~~l~sgs-~dg~i~iw~~~~ 518 (532)
||.|.+|| .++-..++..+..... ....+..|... .| .+++.+ ..++|+.+++..
T Consensus 216 dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr-tg-lla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 216 DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR-TG-LLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC-cc-hhhhhccCcceEEEecccc
Confidence 99999999 4443334443332222 13444455422 34 444444 457799998753
No 342
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.08 E-value=0.0023 Score=63.91 Aligned_cols=230 Identities=12% Similarity=0.097 Sum_probs=128.7
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEeecCCe----------------------------------------eEEEEEe
Q 009569 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ----------------------------------------VSLKHRL 313 (532)
Q Consensus 274 ~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~----------------------------------------~~~~~~~ 313 (532)
.|+.+.|+++..-|++|...|.|.||.+..++. +.+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 588999999988999999999999998754211 1222333
Q ss_pred ecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEee--c------cCCceEEEEEee-----CC---CeEEEE
Q 009569 314 SGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE--K------TGVGLISCGWFL-----DG---GGIFAG 377 (532)
Q Consensus 314 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~------~~~~i~~~~~~~-----~~---~~l~~~ 377 (532)
....++|++++.| |=-+++.|..+|.+.|.|++....+..-. . ....++++.|.. |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 4457889999997 44599999999999999998877665422 1 234677888873 22 458889
Q ss_pred eCCCcEEEEECC--C-C-e---EEEeecCccCceEEEE-EeeC--------------------CCEEEEEECCCeEEEEE
Q 009569 378 MTDKSICLWDLD--G-R-E---LESWKGQKTLRISDMA-ITDD--------------------GKRIISICREAAILLLD 429 (532)
Q Consensus 378 ~~dg~i~iwd~~--~-~-~---~~~~~~~~~~~v~~~~-~s~~--------------------~~~l~~~~~dg~I~iwd 429 (532)
+..|.+.+|.+. . + - .......+.++|..+. ++.+ -..++....+..++++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 999999999873 1 1 1 1111112233555554 3221 12345556678999999
Q ss_pred CCCCceeeeecCC--ceeEEEEc-----CCCCEEEEEecCCeEEEEecCCCCcceeEEecccc--ceEEEEEccCCCCCc
Q 009569 430 REANFERWIEEEE--VITSFSLS-----KDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR--ARFVIRSCFGGFEQA 500 (532)
Q Consensus 430 ~~~~~~~~~~~~~--~i~~~~~s-----p~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~i~~~~~s~d~~ 500 (532)
..+.+......+. ....+++- ..+..|++-..+|.|++|.+..- +.+..+.-+.. ......+++ +++|.
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L-kei~~~~l~~~~d~~~~~~ssi-s~~Gd 319 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL-KEIKSVSLPPPLDSRRLSSSSI-SRNGD 319 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HHHHTT-EE--TTS-
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc-hHhhcccCCCccccccccccEE-CCCCC
Confidence 9887622221133 23334442 35667888889999999999987 66666654321 000111333 66777
Q ss_pred EEEEEe
Q 009569 501 FIASGS 506 (532)
Q Consensus 501 ~l~sgs 506 (532)
.++-.+
T Consensus 320 i~~~~g 325 (395)
T PF08596_consen 320 IFYWTG 325 (395)
T ss_dssp EEEE-S
T ss_pred EEEEeC
Confidence 665443
No 343
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.06 E-value=0.00087 Score=66.71 Aligned_cols=235 Identities=14% Similarity=0.146 Sum_probs=126.7
Q ss_pred ccCCCEEEEE---------eCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcE
Q 009569 281 SHDGKYLASS---------SKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351 (532)
Q Consensus 281 s~~g~~las~---------s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 351 (532)
|||+++++.. +..+.+.|||+.++. ...+......+....|||+|+.++... ++.|.+++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~----~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE----ITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE----EEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc----eEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 6788877763 234678899998652 222322356788999999999998875 57899999887754
Q ss_pred EEEeecc-----------------CCceEEEEEeeCCCeEEEEeCC-C--------------------------------
Q 009569 352 LHVYEKT-----------------GVGLISCGWFLDGGGIFAGMTD-K-------------------------------- 381 (532)
Q Consensus 352 ~~~~~~~-----------------~~~i~~~~~~~~~~~l~~~~~d-g-------------------------------- 381 (532)
.+.-... -..-..+.|+||+++|+....| .
T Consensus 76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~n 155 (353)
T PF00930_consen 76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPN 155 (353)
T ss_dssp EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS--
T ss_pred EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcC
Confidence 4321111 1123467899999998764422 1
Q ss_pred ---cEEEEECCCCeEEEee-----cCccCceEEEEEeeCCCEEEEEE--CC---CeEEEEECCCCcee--e-eecCCce-
Q 009569 382 ---SICLWDLDGRELESWK-----GQKTLRISDMAITDDGKRIISIC--RE---AAILLLDREANFER--W-IEEEEVI- 444 (532)
Q Consensus 382 ---~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~--~d---g~I~iwd~~~~~~~--~-~~~~~~i- 444 (532)
.+.++|+.++....+. ......+..+.|.+++..++..- .+ ..+.++|..++... . ......|
T Consensus 156 p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~ 235 (353)
T PF00930_consen 156 PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVD 235 (353)
T ss_dssp -EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSS
T ss_pred CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCccee
Confidence 1334555443322111 11233688899999988444433 22 24777888776521 1 1122222
Q ss_pred --eEEEEc-CCC-CEEEEEecCCe--EEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEE-EEEeCCC----cEEE
Q 009569 445 --TSFSLS-KDN-KYLLVNLINQE--IHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFI-ASGSEDS----QVNI 513 (532)
Q Consensus 445 --~~~~~s-p~~-~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l-~sgs~dg----~i~i 513 (532)
....|. +++ .++.....+|. |++++..++ ....+....-.+ .....++++++.| +++..++ .|+.
T Consensus 236 ~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~--~~~~lT~G~~~V--~~i~~~d~~~~~iyf~a~~~~p~~r~lY~ 311 (353)
T PF00930_consen 236 VYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG--KPRQLTSGDWEV--TSILGWDEDNNRIYFTANGDNPGERHLYR 311 (353)
T ss_dssp SSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS--EEEESS-SSS-E--EEEEEEECTSSEEEEEESSGGTTSBEEEE
T ss_pred eecccccccCCCCEEEEEEEcCCCcEEEEEccccc--ceeccccCceee--cccceEcCCCCEEEEEecCCCCCceEEEE
Confidence 245554 555 55555566775 555555544 344444333332 2222225565544 4555432 4666
Q ss_pred EeCC-CCCceee
Q 009569 514 FLSF-SPFAKKI 524 (532)
Q Consensus 514 w~~~-~~~~~~~ 524 (532)
-++. .+..+.+
T Consensus 312 v~~~~~~~~~~L 323 (353)
T PF00930_consen 312 VSLDSGGEPKCL 323 (353)
T ss_dssp EETTETTEEEES
T ss_pred EEeCCCCCeEec
Confidence 6666 5444443
No 344
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.06 E-value=0.0031 Score=58.53 Aligned_cols=198 Identities=14% Similarity=0.149 Sum_probs=110.2
Q ss_pred EcccccccEEEEEEccCCC-EEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEE
Q 009569 267 ILEAHSDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (532)
Q Consensus 267 ~l~~h~~~V~~v~~s~~g~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 345 (532)
.+.+-...+..++|+|+.. ++++....+.|...+.. +.+.....+.+ .+..-.|++..++.++++--.++.+.+++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--CCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 4556667799999999755 55666677777666653 44333334444 35578899988888877766689999998
Q ss_pred CCCCc------EEEEee-----ccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCC----CeEEEee-------cCccCc
Q 009569 346 VNSGE------CLHVYE-----KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG----RELESWK-------GQKTLR 403 (532)
Q Consensus 346 ~~~~~------~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~-------~~~~~~ 403 (532)
+.... ....+. .++..+-.++|.|.++.|+++-......+|.++. ..+.... ......
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 83321 112222 2345689999999888888887776666666543 1111110 112235
Q ss_pred eEEEEEeeCC-CEEEEEECCCeEEEEECCCCceeeeecC----------CceeEEEEcCCCCEEEEEecCCeEEEE
Q 009569 404 ISDMAITDDG-KRIISICREAAILLLDREANFERWIEEE----------EVITSFSLSKDNKYLLVNLINQEIHLW 468 (532)
Q Consensus 404 v~~~~~s~~~-~~l~~~~~dg~I~iwd~~~~~~~~~~~~----------~~i~~~~~sp~~~~l~~~~~dg~i~iw 468 (532)
+.+++++|.. .+++.+.....|..+|............ ...-.|+|.++|++.+++ +.+..++|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 8899999965 4556666778899999554432222211 247789999999655554 56666554
No 345
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.05 E-value=8.1e-06 Score=69.91 Aligned_cols=134 Identities=20% Similarity=0.250 Sum_probs=91.5
Q ss_pred HHHHHHHHHhcCChHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHhhccccCcc-ChhhHHHhhh
Q 009569 98 VVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSASFLILEQKFLELLRRDKVSAALNSLRSEIVPLQI-NMSRVHELAS 176 (532)
Q Consensus 98 ~~~~~~~~i~~G~w~~~~~~l~~l~~~~~~~~~~~~~~i~~q~~lelle~~~~~~a~~~L~~~l~pl~~-~~~~~~~l~~ 176 (532)
+..+++++|.+|+++.|++.+......-......+.|.++.|+|+|++..++..+|+...|+++.|... ..+.+..+..
T Consensus 4 ~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 4 ERKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 456789999999999999999876422212224588999999999999999999999999999976665 5667888888
Q ss_pred ccccCCcccccCCCCCCcccHHHHHHHHHHHHhcCCCCccCC-cchHHHHHHHHHH
Q 009569 177 CIISPSKSLTLGDSGQDTEDEKSRSKFLAKLQKLLPASVVIP-EKRLEHLVEKALD 231 (532)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p-~~rl~~l~~~~~~ 231 (532)
++...+...........--....|.++.+.+...+-.....| ...|..++.++..
T Consensus 84 lL~~~~~~~~~~s~~~~l~~~~~~~~la~~~~~~~l~~~~~~~~s~L~~~~~~g~~ 139 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELLSPERREELAEEFNSAILKSYGLPKESPLEVILKAGLS 139 (145)
T ss_pred HHHcCCcccccchHHHHHhChHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 777665442000000001122567888888777654444444 3556666655543
No 346
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.04 E-value=0.0074 Score=54.59 Aligned_cols=186 Identities=11% Similarity=0.064 Sum_probs=108.1
Q ss_pred CCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceE
Q 009569 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLI 363 (532)
Q Consensus 284 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 363 (532)
.++++.||..+.+.--|..+++- .....+ ...|.+-+.- -|++++.|+..|.+++.+..+|.....+...+.--.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~-~We~il---g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~ 97 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNL-IWEAIL---GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV 97 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcE-Eeehhh---CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc
Confidence 35667777777777777776532 111111 1122221111 377899999999999999999988877765443333
Q ss_pred EEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc-eee--eec
Q 009569 364 SCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERW--IEE 440 (532)
Q Consensus 364 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~-~~~--~~~ 440 (532)
.....+++..+..|+.|+..+..|.++........-..+...+-+..|-...|+++...|.+.--...... ..+ ...
T Consensus 98 ~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~ 177 (354)
T KOG4649|consen 98 RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATR 177 (354)
T ss_pred ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhc
Confidence 44566789999999999999999998755443333222234445556633345555666666655555443 111 111
Q ss_pred CCceeE--EEEcCCCCEEEEEecCCeEEEEecCCCCcceeE
Q 009569 441 EEVITS--FSLSKDNKYLLVNLINQEIHLWSIESDPKLVSR 479 (532)
Q Consensus 441 ~~~i~~--~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 479 (532)
..+|.+ ++. +..+..++-||.+.-+| ..+ +.+.+
T Consensus 178 ~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG-~qvwr 213 (354)
T KOG4649|consen 178 FGPIFASPLCV---GSSVIITTVDGVLTSFD-ESG-RQVWR 213 (354)
T ss_pred CCccccCceec---cceEEEEEeccEEEEEc-CCC-cEEEe
Confidence 223321 111 34455555666666666 344 44443
No 347
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.03 E-value=0.00067 Score=72.44 Aligned_cols=133 Identities=17% Similarity=0.190 Sum_probs=96.6
Q ss_pred eCCCcEEEEECCCCcEEEEeeccCCc-eEEEEEee-----CCCeEEEEeCCCcEEEEECCC--CeEEEeec---CccCce
Q 009569 336 GQEEAIRRWDVNSGECLHVYEKTGVG-LISCGWFL-----DGGGIFAGMTDKSICLWDLDG--RELESWKG---QKTLRI 404 (532)
Q Consensus 336 ~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~---~~~~~v 404 (532)
.....|+-.|++.|+.+..+..+... |..++-.. .....++|-.++.+..||.+- ..+..... ......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 34578999999999999999877643 54443221 134567888899999999973 22321111 122367
Q ss_pred EEEEEeeCCCEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEec
Q 009569 405 SDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (532)
Q Consensus 405 ~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~ 470 (532)
+|++-+.+| +||+|+.+|.|++||.-... ..+.+...+|..|..+.||+||++.+ +..+.+++.
T Consensus 581 s~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 581 SCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred eEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 788777776 79999999999999954433 44446689999999999999999888 666777775
No 348
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.03 E-value=0.0029 Score=60.92 Aligned_cols=217 Identities=14% Similarity=0.118 Sum_probs=131.7
Q ss_pred EEccCCCE-EEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeec
Q 009569 279 QFSHDGKY-LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEK 357 (532)
Q Consensus 279 ~~s~~g~~-las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 357 (532)
.|.++... +.+--..+.|.-|+..++.. ..+. +.+.+.++..-..+..|+++.. -+.+++.+++..+..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~----~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK----RVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce----EEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecc
Confidence 46676664 44555678888888875422 2222 2333444444444455555443 456677666655333221
Q ss_pred -----cCCceEEEEEeeCCCeEEEEeC-----------CCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEEC
Q 009569 358 -----TGVGLISCGWFLDGGGIFAGMT-----------DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (532)
Q Consensus 358 -----~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 421 (532)
.....+.+...|+|.+.++... -|.++.+|..+....... .+-..-+.++||||++.++.+..
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~-~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLD-DDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeec-CcEEecCceEECCCCCEEEEEeC
Confidence 1244567788888877665443 134555555444433333 32225688999999988887765
Q ss_pred C-CeEEEEECCC--Cc----e---eeeecCCceeEEEEcCCCCEEEEEecCC-eEEEEecCCCCcceeEEeccccceEEE
Q 009569 422 E-AAILLLDREA--NF----E---RWIEEEEVITSFSLSKDNKYLLVNLINQ-EIHLWSIESDPKLVSRYKGHKRARFVI 490 (532)
Q Consensus 422 d-g~I~iwd~~~--~~----~---~~~~~~~~i~~~~~sp~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~i 490 (532)
. +.|+-|++.. .. . ......+..-.++...+|.+-+++..+| .|.+|+.. + +++..+..+... ..
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G-~l~~~i~lP~~~--~t 258 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G-KLLGEIKLPVKR--PT 258 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C-cEEEEEECCCCC--Cc
Confidence 4 7888888763 11 1 1112345667788888898876555554 89999987 5 788888777433 35
Q ss_pred EEccCCCCCcEEEEEeC
Q 009569 491 RSCFGGFEQAFIASGSE 507 (532)
Q Consensus 491 ~~~~~s~d~~~l~sgs~ 507 (532)
.++|..++.+.|+..+.
T Consensus 259 ~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 259 NPAFGGPDLNTLYITSA 275 (307)
T ss_pred cceEeCCCcCEEEEEec
Confidence 58888888776655443
No 349
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.0037 Score=62.79 Aligned_cols=202 Identities=9% Similarity=0.082 Sum_probs=140.6
Q ss_pred EEEEEEccCCCEE-EEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeC---CCcEEEEECCCCc
Q 009569 275 VWFLQFSHDGKYL-ASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ---EEAIRRWDVNSGE 350 (532)
Q Consensus 275 V~~v~~s~~g~~l-as~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~ 350 (532)
-..++.++.+..+ ++...++.|.+.|..+... .....-- .....++++|+++.+..+.. ++++.+.|..+++
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~---~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV---LGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccce---eeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence 3467888888744 4455568999999765422 2222111 15568999999988777765 6899999999998
Q ss_pred EEEEeeccCCceEEEEEeeCCCeEEEEe-CCCcEEEEECCCCeEEEee----cCccCceEEEEEeeCCCEEEEEECC---
Q 009569 351 CLHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDLDGRELESWK----GQKTLRISDMAITDDGKRIISICRE--- 422 (532)
Q Consensus 351 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~d--- 422 (532)
..........+ ..+++.|+|..+++.. .++.|.+.|..+..+.... .........+.++|+|..+.+....
T Consensus 152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence 88775433334 8899999999777665 7889999998877665410 1111245788999999977666544
Q ss_pred CeEEEEECCCCceeee--ecCC-ceeEEEEcCCCCEEEEEecC-CeEEEEecCCCCcceeEEec
Q 009569 423 AAILLLDREANFERWI--EEEE-VITSFSLSKDNKYLLVNLIN-QEIHLWSIESDPKLVSRYKG 482 (532)
Q Consensus 423 g~I~iwd~~~~~~~~~--~~~~-~i~~~~~sp~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~ 482 (532)
+.+...|..+...... .... ....+.++|+|+++.+.... +.+.+.|..+. .....+..
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~-~v~~~~~~ 293 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD-RVVKTGPT 293 (381)
T ss_pred ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC-ceeeeecc
Confidence 5899999988772221 1122 56778999999999888544 78999998876 55554443
No 350
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.97 E-value=0.00075 Score=68.94 Aligned_cols=146 Identities=12% Similarity=0.130 Sum_probs=94.7
Q ss_pred cccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEE---e
Q 009569 237 CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHR---L 313 (532)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~---~ 313 (532)
++.-+...+.+.+|..+.... ......+-.+.+..+..|++..++|.|+..|.|.++-+........... -
T Consensus 47 ~l~~GsS~G~lyl~~R~~~~~------~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d 120 (726)
T KOG3621|consen 47 YLAMGSSAGSVYLYNRHTGEM------RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCD 120 (726)
T ss_pred eEEEecccceEEEEecCchhh------hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccc
Confidence 444556667788887765322 1122233556677788899999999999999999998876432222111 1
Q ss_pred ecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCc----EEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECC
Q 009569 314 SGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE----CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD 389 (532)
Q Consensus 314 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 389 (532)
..|...|++++|++|+..+++|...|+|..-.+.+.. ..+.+-.....|..+... ++..|++... ...+++++
T Consensus 121 ~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~--r~~Lc~tE 197 (726)
T KOG3621|consen 121 KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLT--RCILCQTE 197 (726)
T ss_pred ccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhh--hhheeecc
Confidence 2367899999999999999999999999998887621 122333345667777665 3444444333 33455655
Q ss_pred CC
Q 009569 390 GR 391 (532)
Q Consensus 390 ~~ 391 (532)
.+
T Consensus 198 ~e 199 (726)
T KOG3621|consen 198 AE 199 (726)
T ss_pred hh
Confidence 43
No 351
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.97 E-value=0.0029 Score=65.86 Aligned_cols=229 Identities=14% Similarity=0.152 Sum_probs=129.4
Q ss_pred CEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCC--CeEEEEeCC--CCCEEEEee---------CCCcEEEEECCCCcE
Q 009569 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK--PVFTVSWSP--NDHQLLTCG---------QEEAIRRWDVNSGEC 351 (532)
Q Consensus 285 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~--~v~~l~~s~--~~~~l~s~~---------~dg~i~iwd~~~~~~ 351 (532)
..++.++.++.|..+|..+++. +..+..... .-..+.-+| .+..++.++ .++.+..+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~---~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQ---VWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCE---eeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 5777788899999999988743 233222111 001111122 123454543 367899999999998
Q ss_pred EEEeeccCC--------------------ce-EEEEEeeCCCeEEEEeCCC------------------cEEEEECCCCe
Q 009569 352 LHVYEKTGV--------------------GL-ISCGWFLDGGGIFAGMTDK------------------SICLWDLDGRE 392 (532)
Q Consensus 352 ~~~~~~~~~--------------------~i-~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~ 392 (532)
+..+..... .+ .+..+.+.+..+++++.++ .|.-+|.++++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 877654211 01 1233444567788887665 68888988766
Q ss_pred EEEeecCccCce------EEEEEe----eCCC---EEEEEECCCeEEEEECCCCceeeeecCCceeEEEEcCCCCEEEEE
Q 009569 393 LESWKGQKTLRI------SDMAIT----DDGK---RIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVN 459 (532)
Q Consensus 393 ~~~~~~~~~~~v------~~~~~s----~~~~---~l~~~~~dg~I~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~ 459 (532)
..-......... ....+. -++. .+++++.+|.++.+|.++++........ ...++.+| ..++++
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-~~~~~~~~--~~vyv~ 344 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-EQPMAYDP--GLVYLG 344 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-ccccccCC--ceEEEc
Confidence 543321110011 011111 1333 5778889999999999999843332211 12234444 333332
Q ss_pred ------------------ecCCeEEEEecCCCCcceeEEeccccc------eEEEEEccCCCCCcEEEEEeCCCcEEEEe
Q 009569 460 ------------------LINQEIHLWSIESDPKLVSRYKGHKRA------RFVIRSCFGGFEQAFIASGSEDSQVNIFL 515 (532)
Q Consensus 460 ------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~i~~~~~s~d~~~l~sgs~dg~i~iw~ 515 (532)
..+|.+.-.|+.++ +.+-+....... ........ ...+..|+.++.||.|+.+|
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG-~~~W~~~~~~~~~~~~~g~~~~~~~~-~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 345 AFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG-KVVWEKREGTIRDSWNIGFPHWGGSL-ATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred cccccccCcccccCCCCCCCceEEEEEeCCCC-cEeeEeeCCccccccccCCcccCcce-EecCCeEEEECCCCeEEEEE
Confidence 23578888898888 555554432100 00000000 12457888899999999999
Q ss_pred CCCCCc
Q 009569 516 SFSPFA 521 (532)
Q Consensus 516 ~~~~~~ 521 (532)
..+|+.
T Consensus 423 ~~tG~~ 428 (488)
T cd00216 423 ATTGKE 428 (488)
T ss_pred CCCCce
Confidence 999864
No 352
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=97.95 E-value=6.7e-06 Score=57.94 Aligned_cols=54 Identities=26% Similarity=0.396 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHhcCCh
Q 009569 97 SVVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSASFLILEQKFLELLRRDKV 150 (532)
Q Consensus 97 ~~~~~~~~~i~~G~w~~~~~~l~~l~~~~~~~~~~~~~~i~~q~~lelle~~~~ 150 (532)
..+.++++.|+.|+|+.|++.+.............+.|.+++|+|+|+++.++.
T Consensus 3 ~~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 3 DERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhHHHHHHHHHHHHcCCc
Confidence 357889999999999999999998865443444578999999999999988754
No 353
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.00014 Score=73.94 Aligned_cols=154 Identities=14% Similarity=0.158 Sum_probs=107.5
Q ss_pred CCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEE-EeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCe--
Q 009569 316 HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH-VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE-- 392 (532)
Q Consensus 316 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-- 392 (532)
|...|.--+++..+++++.|+..|.+++|+-..++... ...+..+.+..++.+++..++++|+..|.|.++-+....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 34456666677789999999999999999977665432 222345566777888888899999999999999886421
Q ss_pred -E---EEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc------eeeeecCCceeEEEEcCCCCEEEEEecC
Q 009569 393 -L---ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF------ERWIEEEEVITSFSLSKDNKYLLVNLIN 462 (532)
Q Consensus 393 -~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~------~~~~~~~~~i~~~~~sp~~~~l~~~~~d 462 (532)
. ......|...|++++|++++..+++|...|.|..-.+.... ..+....+.|..+... ..+|++++.-
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl~ 189 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTLT 189 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhhh
Confidence 1 11222235589999999999999999999999998887721 4555667777766665 3344444322
Q ss_pred CeEEEEecCC
Q 009569 463 QEIHLWSIES 472 (532)
Q Consensus 463 g~i~iwd~~~ 472 (532)
. -.+++++.
T Consensus 190 r-~~Lc~tE~ 198 (726)
T KOG3621|consen 190 R-CILCQTEA 198 (726)
T ss_pred h-hheeecch
Confidence 2 23555543
No 354
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.93 E-value=0.0018 Score=64.37 Aligned_cols=236 Identities=17% Similarity=0.185 Sum_probs=127.5
Q ss_pred ceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecC----------------CCCeEEEEeC
Q 009569 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH----------------RKPVFTVSWS 326 (532)
Q Consensus 263 ~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h----------------~~~v~~l~~s 326 (532)
..+..+......+....|||+|+.+|... ++.|.+++..++.. ...+..+- -+.-..+.||
T Consensus 33 ~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~--~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WS 109 (353)
T PF00930_consen 33 GEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE--TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWS 109 (353)
T ss_dssp TEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE--EESES--TTTEEESB--HHHHHHTSSSSBSEEE-
T ss_pred CceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCe--EEeccccceeEEcCccceeccccccccccceEEC
Confidence 33344443467788999999999999885 67899998765421 11112220 1123468899
Q ss_pred CCCCEEEEeeCCC------------------------------------cEEEEECCCCcEEE--Ee---eccCCceEEE
Q 009569 327 PNDHQLLTCGQEE------------------------------------AIRRWDVNSGECLH--VY---EKTGVGLISC 365 (532)
Q Consensus 327 ~~~~~l~s~~~dg------------------------------------~i~iwd~~~~~~~~--~~---~~~~~~i~~~ 365 (532)
||+++|+....|. .+.++|+.+++... .. ......+..+
T Consensus 110 pd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v 189 (353)
T PF00930_consen 110 PDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRV 189 (353)
T ss_dssp TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEE
T ss_pred CCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccc
Confidence 9999988754331 24455665554321 11 1234567889
Q ss_pred EEeeCCCeEEEEe--CCC---cEEEEECCCCeEEEee-cCccCc---eEEEEEe-eCCCEE-EEEECCCe--EEEEECCC
Q 009569 366 GWFLDGGGIFAGM--TDK---SICLWDLDGRELESWK-GQKTLR---ISDMAIT-DDGKRI-ISICREAA--ILLLDREA 432 (532)
Q Consensus 366 ~~~~~~~~l~~~~--~dg---~i~iwd~~~~~~~~~~-~~~~~~---v~~~~~s-~~~~~l-~~~~~dg~--I~iwd~~~ 432 (532)
.|.+++..++..- .+. .+.++|..++...... ...... -....+. +++..+ .....+|. |.+++..+
T Consensus 190 ~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~ 269 (353)
T PF00930_consen 190 GWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDG 269 (353)
T ss_dssp EEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTS
T ss_pred eecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccc
Confidence 9999988444432 322 4667777653322211 111112 2355554 666544 44446664 66667766
Q ss_pred Cc-eeeeecCCceeE-EEEcCCCCEEE-EEecC--C--eEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEE
Q 009569 433 NF-ERWIEEEEVITS-FSLSKDNKYLL-VNLIN--Q--EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG 505 (532)
Q Consensus 433 ~~-~~~~~~~~~i~~-~~~sp~~~~l~-~~~~d--g--~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sg 505 (532)
+. ..+....-.|+. +.++++++.|+ ++..+ + .++..++.. ...+..+....... ....| +|++++++-.
T Consensus 270 ~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~-~~~~~~LT~~~~~~--~~~~~-Spdg~y~v~~ 345 (353)
T PF00930_consen 270 GKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDS-GGEPKCLTCEDGDH--YSASF-SPDGKYYVDT 345 (353)
T ss_dssp SEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTE-TTEEEESSTTSSTT--EEEEE--TTSSEEEEE
T ss_pred cceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCC-CCCeEeccCCCCCc--eEEEE-CCCCCEEEEE
Confidence 66 444555566754 67888877665 44432 2 455555551 23455555444432 23555 8999887644
No 355
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.86 E-value=0.014 Score=54.27 Aligned_cols=197 Identities=10% Similarity=0.077 Sum_probs=111.0
Q ss_pred EEeecCCCCeEEEEeCCCCC-EEEEeeCCCcEEEEECCCCcEEEEeecc-CCceEEEEEeeCCCeEEEEeCCCcEEEEEC
Q 009569 311 HRLSGHRKPVFTVSWSPNDH-QLLTCGQEEAIRRWDVNSGECLHVYEKT-GVGLISCGWFLDGGGIFAGMTDKSICLWDL 388 (532)
Q Consensus 311 ~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 388 (532)
+.+.+-...++.++|+|+.. ++++....+.|..++. +|+.++.+.-. .+..-.+++..++.++++.-.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 45566667799999999755 5556666788888886 57888777644 355788889877766666667899999988
Q ss_pred CC--C-----eEEEee--c--CccCceEEEEEeeCCCEEEEEECCCeEEEEECCC--Cc--eee---------eecCCce
Q 009569 389 DG--R-----ELESWK--G--QKTLRISDMAITDDGKRIISICREAAILLLDREA--NF--ERW---------IEEEEVI 444 (532)
Q Consensus 389 ~~--~-----~~~~~~--~--~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~--~~--~~~---------~~~~~~i 444 (532)
.. . ....+. . .....+-.++|+|.++.++++-...-..+|.+.. .. ... ...-..+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 32 1 111121 1 1223689999999988888887766666666554 11 110 1123457
Q ss_pred eEEEEcCCC-CEEEEEecCCeEEEEecCCCCcceeEEeccc---------cceEEEEEccCCCCCcEEEEEeCCCcEEEE
Q 009569 445 TSFSLSKDN-KYLLVNLINQEIHLWSIESDPKLVSRYKGHK---------RARFVIRSCFGGFEQAFIASGSEDSQVNIF 514 (532)
Q Consensus 445 ~~~~~sp~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---------~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw 514 (532)
.+++++|.. .+++....+..|..+|. ++ +++..+.-.. ..... ++| .++|+ |+..++-+..++|
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d~-~G-~~~~~~~L~~g~~gl~~~~~QpEG--Ia~-d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELDR-QG-RVVSSLSLDRGFHGLSKDIPQPEG--IAF-DPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE-T-T---EEEEEE-STTGGG-SS---SEEE--EEE--TT---EEEEETTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEECC-CC-CEEEEEEeCCcccCcccccCCccE--EEE-CCCCC-EEEEcCCceEEEe
Confidence 889999965 56666667778888884 44 4555443221 11122 445 77775 4455677777766
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.79 E-value=0.019 Score=58.07 Aligned_cols=195 Identities=11% Similarity=0.166 Sum_probs=104.2
Q ss_pred EEEccCCCEEEEEeCC----------C-eEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEEC
Q 009569 278 LQFSHDGKYLASSSKD----------Q-SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (532)
Q Consensus 278 v~~s~~g~~las~s~d----------g-~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 346 (532)
++.+|.|.-+|....+ . .|.||+.. |..+ ....+.. +.|.++.|+.+ ..|+....||.+++||+
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll-~~i~w~~--~~iv~~~wt~~-e~LvvV~~dG~v~vy~~ 108 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLL-SSIPWDS--GRIVGMGWTDD-EELVVVQSDGTVRVYDL 108 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEe-EEEEECC--CCEEEEEECCC-CeEEEEEcCCEEEEEeC
Confidence 4455555555554333 1 58888877 3222 2222332 88999999875 45566689999999998
Q ss_pred CCCcEEEEee--ccCCceE-----EEEEeeCCCeEEEEeCCCcEEEEECCCCeE--EEeecCc--------cCceEE-EE
Q 009569 347 NSGECLHVYE--KTGVGLI-----SCGWFLDGGGIFAGMTDKSICLWDLDGREL--ESWKGQK--------TLRISD-MA 408 (532)
Q Consensus 347 ~~~~~~~~~~--~~~~~i~-----~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~--------~~~v~~-~~ 408 (532)
. |+....+. .....|. ...+..+| ++.-..++.+++.+--.... ....... ...... ..
T Consensus 109 ~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~ 185 (410)
T PF04841_consen 109 F-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPL 185 (410)
T ss_pred C-CceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceE
Confidence 6 33311111 0111222 22222244 33333445555443222111 1110000 001111 23
Q ss_pred EeeCCCEEEEEECCCeEEEEECCCCceeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEecc
Q 009569 409 ITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483 (532)
Q Consensus 409 ~s~~~~~l~~~~~dg~I~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 483 (532)
++.+....+....++.+.+.+...... ....+++..|++||++++++.-..+|.+.+.+..-. +.+..+...
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~~--i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~-~~~~e~~~~ 257 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFKQ--IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS-EKLCEFDTD 257 (410)
T ss_pred eecCcceEEEEecCCEEEEEEcccccc--ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECccc-ceeEEeecC
Confidence 444555555556666666555433211 334568999999999999999999999988876544 445554433
No 357
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.77 E-value=0.0035 Score=61.49 Aligned_cols=174 Identities=16% Similarity=0.191 Sum_probs=108.5
Q ss_pred CcEEEEECCCCcEEEEeecc-CCceEEEEEee-------CCCeEEEEeC---------C-CcEEEEECCCC-----eEEE
Q 009569 339 EAIRRWDVNSGECLHVYEKT-GVGLISCGWFL-------DGGGIFAGMT---------D-KSICLWDLDGR-----ELES 395 (532)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~~-------~~~~l~~~~~---------d-g~i~iwd~~~~-----~~~~ 395 (532)
..|++.|..+.+.+..+.-. ...+.+++... ...++++|+. . |.|.++++... ++..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 36888898888877666533 33455554332 1466777653 2 88999999873 3332
Q ss_pred e-ecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--eee--eecCCceeEEEEcCCCCEEEEEecCCeEEEEec
Q 009569 396 W-KGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERW--IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (532)
Q Consensus 396 ~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~--~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~ 470 (532)
. .....++|++++-- ++ .++++ .++.|.+|++.... ... ......++++... +.++++|+....+.++..
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 2 12223478888776 33 44443 45799999988766 222 2233355555554 669999999888888866
Q ss_pred CCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 471 ESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
......+..+.....+.++.++.|. ++++.++.+..+|.+.++....
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l-~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFL-VDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-S
T ss_pred EccCCEEEEEEecCCCccEEEEEEe-cCCcEEEEEcCCCeEEEEEECC
Confidence 5432444455444456666777774 2345899999999999998873
No 358
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.76 E-value=0.0043 Score=60.48 Aligned_cols=200 Identities=14% Similarity=0.114 Sum_probs=110.5
Q ss_pred EEeCCCCCEEEEeeC-C--CcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecC
Q 009569 323 VSWSPNDHQLLTCGQ-E--EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ 399 (532)
Q Consensus 323 l~~s~~~~~l~s~~~-d--g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 399 (532)
=+|.+||+.|+.++. | ..+.+.|+.+++..+.-.+.........++|+++.++-......+.-.|+++.+...+...
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 367788977766655 4 4688889999887665444333333566778888877665667899999999877666666
Q ss_pred ccCceEEEEEe--eCCCEEEEEEC----------------------CCeEEEEECCCCc-eeeeecCCceeEEEEcCCCC
Q 009569 400 KTLRISDMAIT--DDGKRIISICR----------------------EAAILLLDREANF-ERWIEEEEVITSFSLSKDNK 454 (532)
Q Consensus 400 ~~~~v~~~~~s--~~~~~l~~~~~----------------------dg~I~iwd~~~~~-~~~~~~~~~i~~~~~sp~~~ 454 (532)
....+-...|. .|+..++-.-. ...|...|+.+++ .........+..+.|||...
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp 200 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDP 200 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEE
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCC
Confidence 65566556664 34555443211 1457788888888 66667778899999999776
Q ss_pred EEEEEecCC-----eEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEe-----CCCcEEEEeCCCCCcee
Q 009569 455 YLLVNLINQ-----EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGS-----EDSQVNIFLSFSPFAKK 523 (532)
Q Consensus 455 ~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs-----~dg~i~iw~~~~~~~~~ 523 (532)
.+++-|..| .-+||-+.+.+.....+..+.. ...+.--||.|||..|.--+ .+..|.-+++.++....
T Consensus 201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~ 278 (386)
T PF14583_consen 201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-GESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR 278 (386)
T ss_dssp EEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-TEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE
T ss_pred CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-CcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE
Confidence 666555444 2367777665455666655544 34455677799998775432 24457778888876544
No 359
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.75 E-value=0.039 Score=52.73 Aligned_cols=220 Identities=14% Similarity=0.151 Sum_probs=122.6
Q ss_pred cCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEe------
Q 009569 282 HDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY------ 355 (532)
Q Consensus 282 ~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------ 355 (532)
..++.|+.|+.+| +.+++...... ..... +...|..+...|+-+.+++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~--~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSK--PTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcc--ceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 3678899999888 89999832222 11211 223399999999877776655 599999998754433311
Q ss_pred --------eccCCceEEEE--EeeCCCeEEEEeCCCcEEEEECCC------CeEEEeecCccCceEEEEEeeCCCEEEEE
Q 009569 356 --------EKTGVGLISCG--WFLDGGGIFAGMTDKSICLWDLDG------RELESWKGQKTLRISDMAITDDGKRIISI 419 (532)
Q Consensus 356 --------~~~~~~i~~~~--~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 419 (532)
......+...+ -...+...++......|.+|.... .....+... ..+.+++|. ++.++.+
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp--~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP--DPPSSIAFL--GNKICVG 154 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC--CCcEEEEEe--CCEEEEE
Confidence 01122333333 112333444444456888887754 223333333 378999998 4567776
Q ss_pred ECCCeEEEEECCCCc-eeeeec-------------CCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCccee--EEecc
Q 009569 420 CREAAILLLDREANF-ERWIEE-------------EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVS--RYKGH 483 (532)
Q Consensus 420 ~~dg~I~iwd~~~~~-~~~~~~-------------~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~ 483 (532)
..+ ...+.|+.++. ..+... ..++..+... ++.+|++. +..-.+.|... +..+ .+.-.
T Consensus 155 ~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~G--~~~r~~~i~W~ 228 (275)
T PF00780_consen 155 TSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKNG--EPSRKSTIQWS 228 (275)
T ss_pred eCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCCC--CcCcccEEEcC
Confidence 644 58888998766 222211 1233333333 45666653 33334445433 2322 23222
Q ss_pred ccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCCceee
Q 009569 484 KRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPFAKKI 524 (532)
Q Consensus 484 ~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~~~~~ 524 (532)
..+. .+.+ ...||+..+. +.|.||++.++...+.
T Consensus 229 ~~p~---~~~~---~~pyli~~~~-~~iEV~~~~~~~lvQ~ 262 (275)
T PF00780_consen 229 SAPQ---SVAY---SSPYLIAFSS-NSIEVRSLETGELVQT 262 (275)
T ss_pred Cchh---EEEE---ECCEEEEECC-CEEEEEECcCCcEEEE
Confidence 2221 2222 2247777665 4599999999976543
No 360
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.72 E-value=0.018 Score=56.46 Aligned_cols=179 Identities=17% Similarity=0.219 Sum_probs=109.3
Q ss_pred CCEEEEEeC----------CCeEEEEEeecC----CeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCC
Q 009569 284 GKYLASSSK----------DQSAIIWEVKED----GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (532)
Q Consensus 284 g~~las~s~----------dg~i~iwd~~~~----~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 349 (532)
..+|+.|+. .|.|.++++... ..++.+... ...++|++++-- ++ +|+.+ .++.|.+|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCc
Confidence 468887753 289999999863 244444433 347889888766 34 44443 3579999999877
Q ss_pred c-EEEEeec-cCCceEEEEEeeCCCeEEEEeCCCcEEEE--ECCCCeEEEeec-CccCceEEEEEeeCCCEEEEEECCCe
Q 009569 350 E-CLHVYEK-TGVGLISCGWFLDGGGIFAGMTDKSICLW--DLDGRELESWKG-QKTLRISDMAITDDGKRIISICREAA 424 (532)
Q Consensus 350 ~-~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~ 424 (532)
+ ....-.. ....+.++... ++++++|.....+.++ +.....+..... .....++++.+-++++.++++..+|.
T Consensus 118 ~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn 195 (321)
T PF03178_consen 118 KTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN 195 (321)
T ss_dssp SSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred ccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe
Confidence 7 4433222 23355555554 6699999988888877 443443433322 22336889999877789999999999
Q ss_pred EEEEECCCC---------c---eeeeecCCceeEE---EEcC--CCC------EEEEEecCCeEEEE
Q 009569 425 ILLLDREAN---------F---ERWIEEEEVITSF---SLSK--DNK------YLLVNLINQEIHLW 468 (532)
Q Consensus 425 I~iwd~~~~---------~---~~~~~~~~~i~~~---~~sp--~~~------~l~~~~~dg~i~iw 468 (532)
+.++..... . .........|+++ ++.| .+. .++.++.+|.|.+.
T Consensus 196 l~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 196 LFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 999887632 1 1223345667777 5555 222 47788889998843
No 361
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.66 E-value=0.047 Score=53.38 Aligned_cols=235 Identities=15% Similarity=0.099 Sum_probs=117.0
Q ss_pred EEEccCCCEEEEEe-CCCe--EEEEEeecCCeeEEEEEeecCCC-CeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEE
Q 009569 278 LQFSHDGKYLASSS-KDQS--AIIWEVKEDGQVSLKHRLSGHRK-PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH 353 (532)
Q Consensus 278 v~~s~~g~~las~s-~dg~--i~iwd~~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 353 (532)
=+|.+||+.|+.++ .||. +.+.|+.++ .+..+..... ......++|+++.++-......|...|+++.+...
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~----~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~ 116 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATG----EITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV 116 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-----EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccC----EEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEE
Confidence 35788997666544 4555 555555544 2334444332 22246678888888776667789999999998877
Q ss_pred EeeccCCceEEEEEee--CCCeEEEEe---C-------------------CCcEEEEECCCCeEEEeecCccCceEEEEE
Q 009569 354 VYEKTGVGLISCGWFL--DGGGIFAGM---T-------------------DKSICLWDLDGRELESWKGQKTLRISDMAI 409 (532)
Q Consensus 354 ~~~~~~~~i~~~~~~~--~~~~l~~~~---~-------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 409 (532)
.+......+-...|.. ++..++-.- . ...|...|+.+++......... .+..+.|
T Consensus 117 vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~-wlgH~~f 195 (386)
T PF14583_consen 117 VYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD-WLGHVQF 195 (386)
T ss_dssp EEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS--EEEEEE
T ss_pred EEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc-cccCccc
Confidence 7777766665566643 455443211 1 2346667888888777766554 8899999
Q ss_pred eeCCCEEEEEECCCe-----EEEEECC--CCc-eeeee--cCCceeEEEEcCCCCEEEEEec-----CCeEEEEecCCCC
Q 009569 410 TDDGKRIISICREAA-----ILLLDRE--ANF-ERWIE--EEEVITSFSLSKDNKYLLVNLI-----NQEIHLWSIESDP 474 (532)
Q Consensus 410 s~~~~~l~~~~~dg~-----I~iwd~~--~~~-~~~~~--~~~~i~~~~~sp~~~~l~~~~~-----dg~i~iwd~~~~~ 474 (532)
+|....++.=|..|- -+||-++ ... ..... ....+..=-|.|||..|..-+. +..|.-+|+.++
T Consensus 196 sP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~- 274 (386)
T PF14583_consen 196 SPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG- 274 (386)
T ss_dssp ETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred CCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC-
Confidence 996554444443321 2455443 333 22211 2233444568999987765322 335677777776
Q ss_pred cceeEEeccccceEEEEEccCCCCCcEEEEEeCCC----------------cEEEEeCCCCCcee
Q 009569 475 KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS----------------QVNIFLSFSPFAKK 523 (532)
Q Consensus 475 ~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg----------------~i~iw~~~~~~~~~ 523 (532)
+........ . ...... ++||++++.=+.|. -|+++++..+....
T Consensus 275 ~~~~~~~~p--~--~~H~~s-s~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~ 334 (386)
T PF14583_consen 275 ERRRLMEMP--W--CSHFMS-SPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK 334 (386)
T ss_dssp -EEEEEEE---S--EEEEEE--TTSSEEEEEE-------------------EEEEEETTTTEEEE
T ss_pred CceEEEeCC--c--eeeeEE-cCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceee
Confidence 222222211 1 222322 78998876544432 46678887765443
No 362
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.001 Score=65.79 Aligned_cols=137 Identities=18% Similarity=0.211 Sum_probs=100.0
Q ss_pred EEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCe-------EEEEeCCCcEEEEECC--CCeEEEeecCc--
Q 009569 332 LLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGG-------IFAGMTDKSICLWDLD--GRELESWKGQK-- 400 (532)
Q Consensus 332 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------l~~~~~dg~i~iwd~~--~~~~~~~~~~~-- 400 (532)
+.++.....++-.|++.|+.+.....+.. |.-+.+.|+.+. -++|-.|+.|+-||.+ +.....+...+
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 44455567899999999999998887766 666777776432 4567789999999987 33222222221
Q ss_pred --cCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecC
Q 009569 401 --TLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (532)
Q Consensus 401 --~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~ 471 (532)
.....|.+-..+| +|++|+.+|.|++||.-... ..+.+...+|..+..+.+|++|++.+ +..+.+.++.
T Consensus 428 ~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 428 STKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 1245666666665 79999999999999984333 55667889999999999999998877 6677777764
No 363
>PHA02713 hypothetical protein; Provisional
Probab=97.63 E-value=0.0074 Score=63.76 Aligned_cols=222 Identities=10% Similarity=0.068 Sum_probs=115.0
Q ss_pred eEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCC------CcEEEEECCCCcEEEEeeccCCceEEEEEe
Q 009569 295 SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE------EAIRRWDVNSGECLHVYEKTGVGLISCGWF 368 (532)
Q Consensus 295 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~ 368 (532)
.+..||..++ .+..+..+...... .+++. -++...+.||.+ ..+..||..+......-.............
T Consensus 273 ~v~~yd~~~~-~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~ 349 (557)
T PHA02713 273 CILVYNINTM-EYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV 349 (557)
T ss_pred CEEEEeCCCC-eEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE
Confidence 4667787653 23222222211111 12222 256677777753 347888987765422111111111111222
Q ss_pred eCCCeEEEEeCCC-----cEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECC---------------------
Q 009569 369 LDGGGIFAGMTDK-----SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE--------------------- 422 (532)
Q Consensus 369 ~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------------------- 422 (532)
-+++..+.|+.++ .+..||..+..-..............+..-+|+..+.|+.+
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccccc
Confidence 3677888888654 47889988765443322221111111223367777777654
Q ss_pred --CeEEEEECCCCc-eeeeec-CCceeEEEEcCCCCEEEEEecC------CeEEEEecCC-C-CcceeEEeccccceEEE
Q 009569 423 --AAILLLDREANF-ERWIEE-EEVITSFSLSKDNKYLLVNLIN------QEIHLWSIES-D-PKLVSRYKGHKRARFVI 490 (532)
Q Consensus 423 --g~I~iwd~~~~~-~~~~~~-~~~i~~~~~sp~~~~l~~~~~d------g~i~iwd~~~-~-~~~~~~~~~~~~~~~~i 490 (532)
..+..||..+.+ ...... ......-...-+++..++|+.+ ..+..||..+ . +..+..+...... .
T Consensus 430 ~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~---~ 506 (557)
T PHA02713 430 SSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA---L 506 (557)
T ss_pred ccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc---c
Confidence 247788888776 211111 1111111122356777777654 2467899886 3 3444444333222 1
Q ss_pred EEccCCCCCcEEEEEeCCC--cEEEEeCCCCCceee
Q 009569 491 RSCFGGFEQAFIASGSEDS--QVNIFLSFSPFAKKI 524 (532)
Q Consensus 491 ~~~~~s~d~~~l~sgs~dg--~i~iw~~~~~~~~~~ 524 (532)
..+ .-++++.++||.|| .+..||+.+.+...+
T Consensus 507 ~~~--~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 507 HTI--LHDNTIMMLHCYESYMLQDTFNVYTYEWNHI 540 (557)
T ss_pred eeE--EECCEEEEEeeecceeehhhcCcccccccch
Confidence 111 23678888999888 788899988765543
No 364
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.61 E-value=0.011 Score=59.28 Aligned_cols=205 Identities=15% Similarity=0.183 Sum_probs=111.2
Q ss_pred ceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeec------CCCCeEEEEeCC-----CC--
Q 009569 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG------HRKPVFTVSWSP-----ND-- 329 (532)
Q Consensus 263 ~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~------h~~~v~~l~~s~-----~~-- 329 (532)
.+...++...++|++++.|.-| ++|.|..+|.+.|.|++.. .+-....+.. ....|+++.|+. |+
T Consensus 77 ~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGP-avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 77 LPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGP-AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp EEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTT-EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred CchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCC-eEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence 4556667779999999998555 8999999999999999743 3323333443 334678888863 33
Q ss_pred -CEEEEeeCCCcEEEEECC--C-CcEE----EEeeccCCceEEEEEe-eCC--------------------CeEEEEeCC
Q 009569 330 -HQLLTCGQEEAIRRWDVN--S-GECL----HVYEKTGVGLISCGWF-LDG--------------------GGIFAGMTD 380 (532)
Q Consensus 330 -~~l~s~~~dg~i~iwd~~--~-~~~~----~~~~~~~~~i~~~~~~-~~~--------------------~~l~~~~~d 380 (532)
-.+++|...|.+.+|.+. . +... .....+.+++..+... .+. ..+++...+
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe 234 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE 234 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence 378888999999999874 1 2111 1222345666665533 221 224555567
Q ss_pred CcEEEEECCCCeEEEeecCccCceEEEEEe-----eCCCEEEEEECCCeEEEEECCCCcee-eee-----cCCceeEEEE
Q 009569 381 KSICLWDLDGRELESWKGQKTLRISDMAIT-----DDGKRIISICREAAILLLDREANFER-WIE-----EEEVITSFSL 449 (532)
Q Consensus 381 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~dg~I~iwd~~~~~~~-~~~-----~~~~i~~~~~ 449 (532)
..++++...+.+..............+.+- ..+..|++-..+|.|++|.+..-+.. ... ....+...++
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssi 314 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSI 314 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE
T ss_pred cceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEE
Confidence 889999987544322222221133444452 35667888899999999999887611 111 1123456778
Q ss_pred cCCCCEEEEEecCCeEEEEec
Q 009569 450 SKDNKYLLVNLINQEIHLWSI 470 (532)
Q Consensus 450 sp~~~~l~~~~~dg~i~iwd~ 470 (532)
+++|..++..+ ...+.++.+
T Consensus 315 s~~Gdi~~~~g-psE~~l~sv 334 (395)
T PF08596_consen 315 SRNGDIFYWTG-PSEIQLFSV 334 (395)
T ss_dssp -TTS-EEEE-S-SSEEEEEEE
T ss_pred CCCCCEEEEeC-cccEEEEEE
Confidence 99998777665 445555544
No 365
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.60 E-value=0.0085 Score=63.23 Aligned_cols=184 Identities=11% Similarity=0.099 Sum_probs=107.8
Q ss_pred ccEEEEEEccCCCEEEEEe------CCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCC--------
Q 009569 273 DEVWFLQFSHDGKYLASSS------KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-------- 338 (532)
Q Consensus 273 ~~V~~v~~s~~g~~las~s------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-------- 338 (532)
..+...++||+|+.+|... .|..-.||-...++....+ ..+. ....-.|+|||..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l--t~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV--LEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee--ecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678899999999887654 3444455554433332222 2232 37788999998877776532
Q ss_pred ----CcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEE---EECCCCeEEE-----eecCccCceEE
Q 009569 339 ----EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICL---WDLDGRELES-----WKGQKTLRISD 406 (532)
Q Consensus 339 ----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i---wd~~~~~~~~-----~~~~~~~~v~~ 406 (532)
+.+.+.+++.++... .....|..+.|+|||..++... ++.|++ -...++.... ....-...+.+
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS 501 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence 233333444433322 2345799999999999988766 477777 4433443211 22222224688
Q ss_pred EEEeeCCCEEEEEECCCe--EEEEECCCCceeeeec---CCceeEEEEcCCCCEEEEEecCCeEEE
Q 009569 407 MAITDDGKRIISICREAA--ILLLDREANFERWIEE---EEVITSFSLSKDNKYLLVNLINQEIHL 467 (532)
Q Consensus 407 ~~~s~~~~~l~~~~~dg~--I~iwd~~~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~dg~i~i 467 (532)
+.|.+++.++ ++..++. +...++.......... ..++..++-+++ .+++...+|.+.+
T Consensus 502 l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 502 LDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred ceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 9999998855 4444443 4444555444322122 456777777763 4556666764433
No 366
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00035 Score=70.39 Aligned_cols=94 Identities=14% Similarity=0.200 Sum_probs=78.0
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeE-EEEeCCCCCEEEEeeCCCcEEEEECCCC
Q 009569 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVF-TVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (532)
Q Consensus 271 h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~-~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 349 (532)
-...|.-+.|+|.-..+|++..+|.|.+..++ +..+.++.-|...++ +++|.|||+.|+.|-.||+|++.|++++
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n----~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN----WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec----cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 34567889999999999999999999999886 246677777777777 9999999999999999999999999999
Q ss_pred cEEEEee-ccCCceEEEEEe
Q 009569 350 ECLHVYE-KTGVGLISCGWF 368 (532)
Q Consensus 350 ~~~~~~~-~~~~~i~~~~~~ 368 (532)
..+..+. .....|.++-|.
T Consensus 95 ~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 95 GRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred Cceeccccccccchheeecc
Confidence 8776632 235567777775
No 367
>PRK10115 protease 2; Provisional
Probab=97.58 E-value=0.15 Score=55.30 Aligned_cols=243 Identities=9% Similarity=0.008 Sum_probs=125.5
Q ss_pred cEEEEEEccCCCEEEEEeC-----CCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCC------CcEE
Q 009569 274 EVWFLQFSHDGKYLASSSK-----DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE------EAIR 342 (532)
Q Consensus 274 ~V~~v~~s~~g~~las~s~-----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d------g~i~ 342 (532)
.+..+.|||||++|+.+.. ...|++.|+.++..+ ...+.+ . -..++|++|++.|+.+..+ ..|+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l--~~~i~~-~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY--PELLDN-V--EPSFVWANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC--CccccC-c--ceEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence 4667889999999886532 235778888755211 111211 1 1469999999876665442 3688
Q ss_pred EEECCCC--cEEEEeeccCCceEEEEEee-CCCeEEEEeC---CCcEEEEECC--CCeEEEeecCccCceEEEEEeeCCC
Q 009569 343 RWDVNSG--ECLHVYEKTGVGLISCGWFL-DGGGIFAGMT---DKSICLWDLD--GRELESWKGQKTLRISDMAITDDGK 414 (532)
Q Consensus 343 iwd~~~~--~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~---dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~~~ 414 (532)
.+++.++ +....+........-..+.+ ++++++..+. ++.+.+++.. .................+. +. +.
T Consensus 203 ~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~ 280 (686)
T PRK10115 203 RHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY-QH 280 (686)
T ss_pred EEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC-CC
Confidence 8898887 44455554433333233334 7877766543 4578888852 2222222222222233322 22 33
Q ss_pred EEEEEECC----CeEEEEECCC-Cc-eeeeec--CCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEe-cccc
Q 009569 415 RIISICRE----AAILLLDREA-NF-ERWIEE--EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK-GHKR 485 (532)
Q Consensus 415 ~l~~~~~d----g~I~iwd~~~-~~-~~~~~~--~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~ 485 (532)
.+...+.. ..|...++.+ .. ..+..+ ...+..+.++ .+.++++...+|.-+++-+......+..+. ....
T Consensus 281 ~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~ 359 (686)
T PRK10115 281 RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPA 359 (686)
T ss_pred EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCc
Confidence 44433322 2355555552 22 445555 2368888887 334555566677654444432112334433 2111
Q ss_pred ceEEEEEccCCCCC-cEEEEEeC---CCcEEEEeCCCCCceeee
Q 009569 486 ARFVIRSCFGGFEQ-AFIASGSE---DSQVNIFLSFSPFAKKIK 525 (532)
Q Consensus 486 ~~~~i~~~~~s~d~-~~l~sgs~---dg~i~iw~~~~~~~~~~~ 525 (532)
......... .+++ .++++.+. -+.++.+|..++....+.
T Consensus 360 ~~~~~~~~~-~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~ 402 (686)
T PRK10115 360 YVTWIAYNP-EPETSRLRYGYSSMTTPDTLFELDMDTGERRVLK 402 (686)
T ss_pred eEeeecccC-CCCCceEEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence 111111111 2333 34444433 567888998887544443
No 368
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.57 E-value=0.0094 Score=62.90 Aligned_cols=148 Identities=15% Similarity=0.201 Sum_probs=90.4
Q ss_pred CCCCeEEEEeCCCCCEEEEee------CCC--cEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCC-------
Q 009569 316 HRKPVFTVSWSPNDHQLLTCG------QEE--AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD------- 380 (532)
Q Consensus 316 h~~~v~~l~~s~~~~~l~s~~------~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------- 380 (532)
....+.+.+++|+|+.++... .|. .|.+++. .+.. ..+.. ....+.-.|+|+|..+++....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEe
Confidence 334678899999999887765 243 4555564 2322 33322 2237788999998877776432
Q ss_pred -----CcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEE---EECCCCceee------e-ecCCcee
Q 009569 381 -----KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILL---LDREANFERW------I-EEEEVIT 445 (532)
Q Consensus 381 -----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~i---wd~~~~~~~~------~-~~~~~i~ 445 (532)
+.+.+.+++++.... .....|..+.|+|||..++... ++.|++ -....+...+ . .....+.
T Consensus 425 ~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAV 500 (591)
T ss_pred ccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccc
Confidence 234334444443333 1123799999999999988876 577777 4434443222 1 2233468
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEecC
Q 009569 446 SFSLSKDNKYLLVNLINQEIHLWSIE 471 (532)
Q Consensus 446 ~~~~sp~~~~l~~~~~dg~i~iwd~~ 471 (532)
++.|.+++.++ ++..++...+|.+.
T Consensus 501 ~l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 501 SLDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred cceEecCCEEE-EEecCCCCceEEEe
Confidence 89999999855 55555554555543
No 369
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.56 E-value=0.00019 Score=44.62 Aligned_cols=38 Identities=42% Similarity=0.716 Sum_probs=34.2
Q ss_pred ceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEE
Q 009569 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWE 300 (532)
Q Consensus 263 ~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd 300 (532)
++...+..|...|+++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667778999999999999999999999999999996
No 370
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.55 E-value=0.12 Score=51.85 Aligned_cols=80 Identities=11% Similarity=0.013 Sum_probs=56.2
Q ss_pred CceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCC----------------Cc-EEEE
Q 009569 442 EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE----------------QA-FIAS 504 (532)
Q Consensus 442 ~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d----------------~~-~l~s 504 (532)
..+.+++.+|++++.++.+.-|.|.++|+.++ ..++.++|..+.....--.. ... .. +++-
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~-~vvrmWKGYRdAqc~wi~~~-~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARG-IVVRMWKGYRDAQCGWIEVP-EEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCC-hhhhhhccCccceEEEEEee-cccccccccccccCCCCcceEEEEEE
Confidence 34778999999999999988899999999998 88888888765422111111 111 11 2334
Q ss_pred EeCCCcEEEEeCCCCCcee
Q 009569 505 GSEDSQVNIFLSFSPFAKK 523 (532)
Q Consensus 505 gs~dg~i~iw~~~~~~~~~ 523 (532)
+-.-|.|-||.+.+|....
T Consensus 386 aprRg~lEvW~~~~g~Rv~ 404 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVA 404 (415)
T ss_pred eccCCeEEEEecCCCCEEE
Confidence 5568999999999986443
No 371
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00042 Score=69.87 Aligned_cols=94 Identities=18% Similarity=0.161 Sum_probs=76.2
Q ss_pred CCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceE-EEEEeeCCCeEEEEeCCCcEEEEECCCCeEEE
Q 009569 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLI-SCGWFLDGGGIFAGMTDKSICLWDLDGRELES 395 (532)
Q Consensus 317 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 395 (532)
...|.-+.|+|.-..+|.+..+|.|.++.+. .+.+.++..++..++ +++|.|||+.+++|-.||+|++.|.+.+....
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3457889999999999999999999999987 778888887777777 99999999999999999999999998654333
Q ss_pred e-ecCccCceEEEEEee
Q 009569 396 W-KGQKTLRISDMAITD 411 (532)
Q Consensus 396 ~-~~~~~~~v~~~~~s~ 411 (532)
- .......|.++.|++
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 2 222223688888864
No 372
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.50 E-value=0.017 Score=62.07 Aligned_cols=134 Identities=17% Similarity=0.202 Sum_probs=90.5
Q ss_pred CCCeEEEEEeecCCeeEEEEEeecCCCC-eEEEEeCC-----CCCEEEEeeCCCcEEEEECCCCc--EEEE-ee--ccCC
Q 009569 292 KDQSAIIWEVKEDGQVSLKHRLSGHRKP-VFTVSWSP-----NDHQLLTCGQEEAIRRWDVNSGE--CLHV-YE--KTGV 360 (532)
Q Consensus 292 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~-v~~l~~s~-----~~~~l~s~~~dg~i~iwd~~~~~--~~~~-~~--~~~~ 360 (532)
....++-.|++.| +.+..+..|... |..++-.. +...-+.|-.+..+..||.+-.. ++.. .. ....
T Consensus 502 ~~~~ly~mDLe~G---KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 502 NPNKLYKMDLERG---KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCCceEEEecCCC---cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence 4567888888876 456666666543 55443321 13345667778899999997542 2211 11 1244
Q ss_pred ceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEEC
Q 009569 361 GLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDR 430 (532)
Q Consensus 361 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~ 430 (532)
...|++-..+| +||+|+.+|.|++||--+....+....-+.+|.+|..+.||+++++.|.. .+.+++.
T Consensus 579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred CceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 56777766555 79999999999999966655555555555699999999999998886654 5666664
No 373
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.45 E-value=0.12 Score=52.68 Aligned_cols=194 Identities=14% Similarity=0.185 Sum_probs=110.2
Q ss_pred eEEEEeCCCCCEEEEe-eCCC----cEEEEECCCCcEEEEe-eccCCceEEEEEeeCCCeEEEEeCCC-----------c
Q 009569 320 VFTVSWSPNDHQLLTC-GQEE----AIRRWDVNSGECLHVY-EKTGVGLISCGWFLDGGGIFAGMTDK-----------S 382 (532)
Q Consensus 320 v~~l~~s~~~~~l~s~-~~dg----~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg-----------~ 382 (532)
+....+|||+++++.+ +..| .|+++|+.+|+.+... ... ....+.|.++++.|+....+. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 3467899999988765 3334 5999999999776432 222 123499999988877665332 3
Q ss_pred EEEEECCCCe---EEEeecCccCc-eEEEEEeeCCCEEEEEEC---C-CeEEEEECCCC-----c-eeeeecCCceeEEE
Q 009569 383 ICLWDLDGRE---LESWKGQKTLR-ISDMAITDDGKRIISICR---E-AAILLLDREAN-----F-ERWIEEEEVITSFS 448 (532)
Q Consensus 383 i~iwd~~~~~---~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~---d-g~I~iwd~~~~-----~-~~~~~~~~~i~~~~ 448 (532)
|+.|.+.+.. ...+....... ...+..++|+++++..+. + ..+++.|.... . ..+......+....
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 7888886532 22333333223 678899999998776542 2 45889999875 2 33334344443333
Q ss_pred EcCCCCEEEEEe---cCCeEEEEecCCCCc--ceeEEeccccceEEEEEccCCCCCcEEEEEeCCCc--EEEEeCC
Q 009569 449 LSKDNKYLLVNL---INQEIHLWSIESDPK--LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQ--VNIFLSF 517 (532)
Q Consensus 449 ~sp~~~~l~~~~---~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~--i~iw~~~ 517 (532)
-+..+.+++... .++.|.-.++..... ....+..+........+.. ..+.+++....++. |+++++.
T Consensus 284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 284 DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence 333444444432 245677777776621 1224555555433333322 23345555555654 8889988
No 374
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.44 E-value=0.12 Score=49.79 Aligned_cols=202 Identities=16% Similarity=0.211 Sum_probs=116.3
Q ss_pred EEEEccCCCEEEEE--eCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECC-CCcEEE
Q 009569 277 FLQFSHDGKYLASS--SKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN-SGECLH 353 (532)
Q Consensus 277 ~v~~s~~g~~las~--s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~ 353 (532)
..+++.||+++... +---.|.|-|+... +....+.. ..+..+--+++ ..+.+-|.||.+.-..+. .|+...
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~---kvv~ei~~--PGC~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAK---KVVGEIDT--PGCWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTT---EEEEEEEG--TSEEEEEEEET-TEEEEEETTSCEEEEEETSTSSEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCC---ceeeeecC--CCEEEEEecCC-CceEEEecCCceEEEEECCCCCEeE
Confidence 45788888877664 33456788888754 23333321 22223322222 457788889998888886 565543
Q ss_pred Ee----eccCCceE-EEEEeeCCCeEEEEeCCCcEEEEECCCCeEE---EeecC---------ccCceEEEEEeeCCCEE
Q 009569 354 VY----EKTGVGLI-SCGWFLDGGGIFAGMTDKSICLWDLDGRELE---SWKGQ---------KTLRISDMAITDDGKRI 416 (532)
Q Consensus 354 ~~----~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~---------~~~~v~~~~~s~~~~~l 416 (532)
.. .....++. .-.+...+..++.-+.+|.|+-.|+.+.... .+... ..+.-.-+++++..+.|
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl 252 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL 252 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence 22 11122222 3334445556666788899999998764432 22110 11133457777766555
Q ss_pred EEEEC---C-------CeEEEEECCCCc-eeeeecCCceeEEEEcCCCC-EEEEE-ecCCeEEEEecCCCCcceeEEecc
Q 009569 417 ISICR---E-------AAILLLDREANF-ERWIEEEEVITSFSLSKDNK-YLLVN-LINQEIHLWSIESDPKLVSRYKGH 483 (532)
Q Consensus 417 ~~~~~---d-------g~I~iwd~~~~~-~~~~~~~~~i~~~~~sp~~~-~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~ 483 (532)
++.-. + ..|-+||+.+.+ ...+....++.+|.++.+.+ +|++. ..++.+.+||..++ +.++++..-
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG-k~~~~~~~l 331 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG-KLVRSIEQL 331 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT---EEEEE---
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC-cEEeehhcc
Confidence 54321 1 138888998888 44455566788999999876 45443 45789999999998 888888754
Q ss_pred cc
Q 009569 484 KR 485 (532)
Q Consensus 484 ~~ 485 (532)
..
T Consensus 332 G~ 333 (342)
T PF06433_consen 332 GE 333 (342)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 375
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.44 E-value=0.064 Score=54.36 Aligned_cols=199 Identities=13% Similarity=0.064 Sum_probs=97.3
Q ss_pred cceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEE---EEEeecCCCCeEEEEeCCCCCEEEEeeCC
Q 009569 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSL---KHRLSGHRKPVFTVSWSPNDHQLLTCGQE 338 (532)
Q Consensus 262 ~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~---~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 338 (532)
++++..+.--.+.|.++.|+.+.+ |+....||.++++|+....++.. .....-....+....+..+|-.+++ .+
T Consensus 70 G~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~ 146 (410)
T PF04841_consen 70 GKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GN 146 (410)
T ss_pred CCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEEEEC--CC
Confidence 455555443337899999988654 55566899999999872210000 0001111122222333335533333 34
Q ss_pred CcEEEEECCCCc-EEEEeeccCC---------ceEE-EEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEE
Q 009569 339 EAIRRWDVNSGE-CLHVYEKTGV---------GLIS-CGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDM 407 (532)
Q Consensus 339 g~i~iwd~~~~~-~~~~~~~~~~---------~i~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 407 (532)
+.+.+.+--... ..+.+..-.. .... ..+..+....+....++.+.+.+-.... . .. ..+++..|
T Consensus 147 ~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~--~-i~-~~~~i~~i 222 (410)
T PF04841_consen 147 NRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK--Q-ID-SDGPIIKI 222 (410)
T ss_pred CeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc--c-cc-CCCCeEEE
Confidence 444433222111 1111110000 0000 1233334444444444555533322210 1 11 12379999
Q ss_pred EEeeCCCEEEEEECCCeEEEEECCCCc---eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEe
Q 009569 408 AITDDGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (532)
Q Consensus 408 ~~s~~~~~l~~~~~dg~I~iwd~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd 469 (532)
++||++++++.-..+|.+.+.+.+-.+ ..-.........+.|.-+...++.- ...+.++.
T Consensus 223 avSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 223 AVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred EECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 999999999999999999998765444 1112223456677777554333222 33444444
No 376
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.38 E-value=0.027 Score=59.46 Aligned_cols=233 Identities=17% Similarity=0.108 Sum_probs=129.0
Q ss_pred ccCCCEEEEEeCC------CeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCC-C-----cEEEEECCC
Q 009569 281 SHDGKYLASSSKD------QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-E-----AIRRWDVNS 348 (532)
Q Consensus 281 s~~g~~las~s~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g-----~i~iwd~~~ 348 (532)
+..+.+++.|+.+ ..+..+|..++ .+.....+..... -.+++.. ++...++|+.| | ++..||..+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~-~w~~~a~m~~~r~-~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTN-EWSSLAPMPSPRC-RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcC-cEeecCCCCcccc-cccEEEE-CCEEEEEccccCCCcccceEEEecCCC
Confidence 3345666777766 35778888754 3333333332222 2333333 45778888888 3 688899887
Q ss_pred CcEEEEeeccCCceEEEEEeeCCCeEEEEeCCC-----cEEEEECCCCeEEEeecCccCceEEEEE-eeCCCEEEEEECC
Q 009569 349 GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDK-----SICLWDLDGRELESWKGQKTLRISDMAI-TDDGKRIISICRE 422 (532)
Q Consensus 349 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~d 422 (532)
.+....-.........-.-.-+|...++|+.|| ++-.||..+.+-........ .....+. .-+|...++|+.+
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~ 437 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGD 437 (571)
T ss_pred CceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcC
Confidence 764432111111111111122788889999887 47778887655443333322 2233322 3367777777754
Q ss_pred ------CeEEEEECCCCceeee-e---cCCceeEEEEcCCCCEEEEEecCCe-----EEEEecCCC-CcceeEEeccccc
Q 009569 423 ------AAILLLDREANFERWI-E---EEEVITSFSLSKDNKYLLVNLINQE-----IHLWSIESD-PKLVSRYKGHKRA 486 (532)
Q Consensus 423 ------g~I~iwd~~~~~~~~~-~---~~~~i~~~~~sp~~~~l~~~~~dg~-----i~iwd~~~~-~~~~~~~~~~~~~ 486 (532)
..+..||..+..-... . ...... ++. -++.+.++|+.|+. |..||..+. +..+..+......
T Consensus 438 ~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~ 515 (571)
T KOG4441|consen 438 GSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA 515 (571)
T ss_pred CCccccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc
Confidence 4578899988772111 1 111122 222 25778888887763 777888765 1222222222222
Q ss_pred eEEEEEccCCCCCcEEEEEeCCC-----cEEEEeCCCCCceee
Q 009569 487 RFVIRSCFGGFEQAFIASGSEDS-----QVNIFLSFSPFAKKI 524 (532)
Q Consensus 487 ~~~i~~~~~s~d~~~l~sgs~dg-----~i~iw~~~~~~~~~~ 524 (532)
.. ++ .-++...++|+.|| +|-.||..+.+....
T Consensus 516 ~g---~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~ 553 (571)
T KOG4441|consen 516 VG---VV--VLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEV 553 (571)
T ss_pred cc---EE--EECCEEEEEecccCccccceeEEcCCCCCceeeC
Confidence 11 11 23567778888876 478888888766544
No 377
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.38 E-value=0.15 Score=49.00 Aligned_cols=229 Identities=15% Similarity=0.124 Sum_probs=105.5
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcE-EE
Q 009569 275 VWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC-LH 353 (532)
Q Consensus 275 V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~ 353 (532)
..++.|..+ ..+++| ..+ +.+...+.+..+..+..-..-......+....++..++ ++..|.|..= .+.|+. ..
T Consensus 64 l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T-~DgG~tW~~ 138 (302)
T PF14870_consen 64 LNSISFDGN-EGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRT-TDGGKTWQA 138 (302)
T ss_dssp EEEEEEETT-EEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEE-SSTTSSEEE
T ss_pred EEEEEecCC-ceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEe-CCCCCCeeE
Confidence 566777543 344444 344 33444444545544332111222333333333333333 3444544322 223322 23
Q ss_pred EeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCC
Q 009569 354 VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN 433 (532)
Q Consensus 354 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~ 433 (532)
......+.+..+.-+++|++++++..-....-||--...-..........|..|.|.|++.+.+. ...|.|++=+....
T Consensus 139 ~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 139 VVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDD 217 (302)
T ss_dssp EE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTE
T ss_pred cccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCCC
Confidence 33444567888888999998888876666667876433223333333348999999999877665 48899998873222
Q ss_pred ceeee-------ecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEec-cccceEEEEEccCCCCCcEEEEE
Q 009569 434 FERWI-------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG-HKRARFVIRSCFGGFEQAFIASG 505 (532)
Q Consensus 434 ~~~~~-------~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~i~~~~~s~d~~~l~sg 505 (532)
...+. .....+..++|.+++...++|+ .|.+ +.....+ +.-++... ..-+....++.|.+++. -...
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgG-ktW~~~~~~~~~~~n~~~i~f~~~~~--gf~l 292 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGG-KTWQKDRVGENVPSNLYRIVFVNPDK--GFVL 292 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTT-SS-EE-GGGTTSSS---EEEEEETTE--EEEE
T ss_pred ccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCC-ccceECccccCCCCceEEEEEcCCCc--eEEE
Confidence 21111 1233478999999887777666 5544 3333444 33333332 22232345567755533 3335
Q ss_pred eCCCcEEEE
Q 009569 506 SEDSQVNIF 514 (532)
Q Consensus 506 s~dg~i~iw 514 (532)
+.+|.|.-|
T Consensus 293 G~~G~ll~~ 301 (302)
T PF14870_consen 293 GQDGVLLRY 301 (302)
T ss_dssp -STTEEEEE
T ss_pred CCCcEEEEe
Confidence 688887655
No 378
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.34 E-value=0.022 Score=57.91 Aligned_cols=181 Identities=12% Similarity=0.059 Sum_probs=96.0
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEE
Q 009569 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL 352 (532)
Q Consensus 273 ~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 352 (532)
+.-...+|.+.++ +|+-..+++|.|+.--++... ..+.. ...+..+-. |..|+..+.+ .|.+||+.+++.+
T Consensus 69 G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~---k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i 139 (443)
T PF04053_consen 69 GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVV---KSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLI 139 (443)
T ss_dssp EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT---------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EE
T ss_pred CceeEEEEecCcc-EEEEECCCeEEEEEcCccccc---eEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHccee
Confidence 3344677888555 565556888999632211111 11111 112444433 7777776554 8999999999999
Q ss_pred EEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCC------------eEEEeecCccCceEEEEEeeCCCEEEEEE
Q 009569 353 HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR------------ELESWKGQKTLRISDMAITDDGKRIISIC 420 (532)
Q Consensus 353 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 420 (532)
..+... +|..+.|++++.+++..+.+ .+++++.+.. .+....... ..|.+.+|..+ .++-.+
T Consensus 140 ~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~-~~IkSg~W~~d--~fiYtT 213 (443)
T PF04053_consen 140 RRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEIS-ERIKSGCWVED--CFIYTT 213 (443)
T ss_dssp EEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETT--EEEEE-
T ss_pred eEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEec-ceeEEEEEEcC--EEEEEc
Confidence 988743 38899999999999988754 6777776543 333333312 27888899866 444444
Q ss_pred CCCeEEEEECCCCc-eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecC
Q 009569 421 REAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (532)
Q Consensus 421 ~dg~I~iwd~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~ 471 (532)
.. .++. +-++. ..+...+.++.=+.+.|..+.++....|+.|..+.+.
T Consensus 214 ~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 214 SN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred CC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 44 6665 44455 3333335566667777767778888788888777664
No 379
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.31 E-value=0.023 Score=59.15 Aligned_cols=187 Identities=14% Similarity=0.102 Sum_probs=111.4
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEeeccCC------ceE--EEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCc
Q 009569 329 DHQLLTCGQEEAIRRWDVNSGECLHVYEKTGV------GLI--SCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK 400 (532)
Q Consensus 329 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~i~--~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 400 (532)
+..++.++.++.|.-.|..+|+.+..+..... .+. .+... ++..++.++.++.|+-+|.++++..-.....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 44677778889999999999988776653322 010 01111 2267888889999999999876654333222
Q ss_pred cCc-----e-EEEEEeeCCCEEEEEE---------CCCeEEEEECCCCceeeeecC--C--------------------c
Q 009569 401 TLR-----I-SDMAITDDGKRIISIC---------REAAILLLDREANFERWIEEE--E--------------------V 443 (532)
Q Consensus 401 ~~~-----v-~~~~~s~~~~~l~~~~---------~dg~I~iwd~~~~~~~~~~~~--~--------------------~ 443 (532)
... + ....+. +..++.++ .++.++.+|..+++....... . .
T Consensus 140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 110 1 111222 23455543 367899999998873322111 0 0
Q ss_pred e-eEEEEcCCCCEEEEEecCC------------------eEEEEecCCCCcceeEEeccccce---------EEEEEccC
Q 009569 444 I-TSFSLSKDNKYLLVNLINQ------------------EIHLWSIESDPKLVSRYKGHKRAR---------FVIRSCFG 495 (532)
Q Consensus 444 i-~~~~~sp~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~~---------~~i~~~~~ 495 (532)
+ .+.++++.+..+++++.++ .|.-+|..++ +.+-.++...... .+....
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG-~~~W~~~~~~~~~~~~~~~s~p~~~~~~-- 294 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG-KVKWFYQTTPHDLWDYDGPNQPSLADIK-- 294 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC-CEEEEeeCCCCCCcccccCCCCeEEecc--
Confidence 1 1345555667788887665 7999999988 6666654221110 000110
Q ss_pred CCCCc---EEEEEeCCCcEEEEeCCCCCc
Q 009569 496 GFEQA---FIASGSEDSQVNIFLSFSPFA 521 (532)
Q Consensus 496 s~d~~---~l~sgs~dg~i~iw~~~~~~~ 521 (532)
.-++. .++.++.+|.++..|..+|+.
T Consensus 295 ~~~g~~~~~V~~g~~~G~l~ald~~tG~~ 323 (488)
T cd00216 295 PKDGKPVPAIVHAPKNGFFYVLDRTTGKL 323 (488)
T ss_pred ccCCCeeEEEEEECCCceEEEEECCCCcE
Confidence 12333 678888999999999999864
No 380
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.30 E-value=0.025 Score=44.73 Aligned_cols=100 Identities=16% Similarity=0.226 Sum_probs=67.0
Q ss_pred eEEEEeCC---CC-CEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEE
Q 009569 320 VFTVSWSP---ND-HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES 395 (532)
Q Consensus 320 v~~l~~s~---~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 395 (532)
|+++++.. || +.|++|+.|..|++|+- .+.+..+.. ...|++++-... ..|+.+..+|+|-+|+-..+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl--- 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL--- 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCccee---
Confidence 45555544 33 58999999999999984 355666653 445777776655 679999999999999864332
Q ss_pred eecCccCceEEEEEee-C--C-CEEEEEECCCeEE
Q 009569 396 WKGQKTLRISDMAITD-D--G-KRIISICREAAIL 426 (532)
Q Consensus 396 ~~~~~~~~v~~~~~s~-~--~-~~l~~~~~dg~I~ 426 (532)
|.......+.++++.. + | .-|++|-.+|.|-
T Consensus 75 WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222222466666544 2 2 2688888888764
No 381
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.27 E-value=0.089 Score=48.96 Aligned_cols=161 Identities=10% Similarity=0.129 Sum_probs=109.3
Q ss_pred eecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeecc-CCceEEEEEeeCCCeEEEEeCCCcEEEEECCCC
Q 009569 313 LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT-GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR 391 (532)
Q Consensus 313 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 391 (532)
+.+-...+.++.|+|+.+.|++......-.+|=...|+.+.++.-. -...-.+.+..+|.++++--.++.++++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3455556999999999999999888888888888889998887633 233456778877777777778888888877532
Q ss_pred -eEE-----Eee----cCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCceeee-----ec-------CCceeEEEE
Q 009569 392 -ELE-----SWK----GQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWI-----EE-------EEVITSFSL 449 (532)
Q Consensus 392 -~~~-----~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~~~~~-----~~-------~~~i~~~~~ 449 (532)
... .+. .........++|+|....++.+-...-+.||........+. .+ -..|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 111 111 11133678999999998888887777777776654331111 11 124677888
Q ss_pred cCC-CCEEEEEecCCeEEEEecCCC
Q 009569 450 SKD-NKYLLVNLINQEIHLWSIESD 473 (532)
Q Consensus 450 sp~-~~~l~~~~~dg~i~iwd~~~~ 473 (532)
++. +.+++-+.+++.+.-.|....
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCC
Confidence 874 456666677777777776654
No 382
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.26 E-value=0.033 Score=44.05 Aligned_cols=101 Identities=17% Similarity=0.262 Sum_probs=67.7
Q ss_pred eEEEEEee-C---CCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCceee
Q 009569 362 LISCGWFL-D---GGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERW 437 (532)
Q Consensus 362 i~~~~~~~-~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~~~~ 437 (532)
|+++++.. + .+.|++|+.|..|++|+-+. .+..+.... .|.+++-... ..++.+..+|+|-+|+-....-+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-~~~Ei~e~~--~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWR- 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-IVAEITETD--KVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWR- 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-EEEEEeccc--ceEEEEEcCC-CEEEEEecCCEEEEEeCcceeee-
Confidence 56666654 2 26799999999999998542 233333333 6888887766 57888999999999987544422
Q ss_pred eecCCceeEEEEcC---CC-CEEEEEecCCeEEE
Q 009569 438 IEEEEVITSFSLSK---DN-KYLLVNLINQEIHL 467 (532)
Q Consensus 438 ~~~~~~i~~~~~sp---~~-~~l~~~~~dg~i~i 467 (532)
...+..++++.+.. || .-|++|-.+|.|-+
T Consensus 77 iKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 77 IKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 22334466665543 22 47888888887643
No 383
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.25 E-value=0.051 Score=52.36 Aligned_cols=183 Identities=13% Similarity=0.089 Sum_probs=107.5
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEE-eecC-CCCeEEEEeCCCCCEEEEeeC-----C----CcEEEE
Q 009569 276 WFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHR-LSGH-RKPVFTVSWSPNDHQLLTCGQ-----E----EAIRRW 344 (532)
Q Consensus 276 ~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~-~~~h-~~~v~~l~~s~~~~~l~s~~~-----d----g~i~iw 344 (532)
.++..-..+..|+++. .-+.+++..++........ ..+. ....+.+...|+|.+.++... . ..-.+|
T Consensus 69 ~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~ly 146 (307)
T COG3386 69 SSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLY 146 (307)
T ss_pred ccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEE
Confidence 4444434444555543 3356777765543222222 1122 234567888999987776544 1 112344
Q ss_pred ECC-CCcEEEEeeccCCceEEEEEeeCCCeEEEEeCC-CcEEEEECCC-------CeEEEeecCccCceEEEEEeeCCCE
Q 009569 345 DVN-SGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD-KSICLWDLDG-------RELESWKGQKTLRISDMAITDDGKR 415 (532)
Q Consensus 345 d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~ 415 (532)
.+. .+..++.+..+-...+.++|+||++.++.+.+. +.|.-|++.. ...........+..-.++...+|.+
T Consensus 147 r~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~l 226 (307)
T COG3386 147 RVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNL 226 (307)
T ss_pred EEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCE
Confidence 444 566666666655566789999999888877654 7788887751 1112222233346677888888988
Q ss_pred EEEEECCC-eEEEEECCCCc-eeeeecCCceeEEEEc-CCCCEEEEEe
Q 009569 416 IISICREA-AILLLDREANF-ERWIEEEEVITSFSLS-KDNKYLLVNL 460 (532)
Q Consensus 416 l~~~~~dg-~I~iwd~~~~~-~~~~~~~~~i~~~~~s-p~~~~l~~~~ 460 (532)
.+++..+| .|.+|+..... ....-....+++++|- |+.+.|++.+
T Consensus 227 w~~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 227 WVAAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEecccCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 76555554 89999999444 3333333667788775 3445555544
No 384
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.23 E-value=0.16 Score=53.28 Aligned_cols=229 Identities=14% Similarity=0.129 Sum_probs=126.1
Q ss_pred CEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCC---CCCEEEEee------CCCcEEEEECCCCcEEEEe
Q 009569 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP---NDHQLLTCG------QEEAIRRWDVNSGECLHVY 355 (532)
Q Consensus 285 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~---~~~~l~s~~------~dg~i~iwd~~~~~~~~~~ 355 (532)
..++.++.|+.+.-.|..+++..-. .....+... ..+.-+| ++ .++.+. .+|.|..+|.++|+.+..+
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~-~~~~~~~~~-~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWS-KKNGDYKAG-YTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEee-ccccccccc-ccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 4567778899999999987743211 111111110 1111122 34 444443 2689999999999987655
Q ss_pred eccC-------------------------------CceE-EEEEeeCCCeEEEEeCC-----C-----------cEEEEE
Q 009569 356 EKTG-------------------------------VGLI-SCGWFLDGGGIFAGMTD-----K-----------SICLWD 387 (532)
Q Consensus 356 ~~~~-------------------------------~~i~-~~~~~~~~~~l~~~~~d-----g-----------~i~iwd 387 (532)
..-. ..++ .+.+.|...+++.+..+ + .|.-.|
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 4221 1111 23555656666665522 2 566667
Q ss_pred CCCCeEEEeecCccCce---------EEEEEeeCCC---EEEEEECCCeEEEEECCCCcee----------ee---e-cC
Q 009569 388 LDGRELESWKGQKTLRI---------SDMAITDDGK---RIISICREAAILLLDREANFER----------WI---E-EE 441 (532)
Q Consensus 388 ~~~~~~~~~~~~~~~~v---------~~~~~s~~~~---~l~~~~~dg~I~iwd~~~~~~~----------~~---~-~~ 441 (532)
++++++.-........+ .-+.+..+|+ .++.++.+|.+++.|.++++.. .. . ..
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~ 357 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKT 357 (527)
T ss_pred cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCC
Confidence 77766643322111111 1122224665 7788999999999999987721 00 0 00
Q ss_pred -Cce----------------------------eEEEEcCCCCEEEEEecC------------------------------
Q 009569 442 -EVI----------------------------TSFSLSKDNKYLLVNLIN------------------------------ 462 (532)
Q Consensus 442 -~~i----------------------------~~~~~sp~~~~l~~~~~d------------------------------ 462 (532)
.++ ..++++|+..++++...+
T Consensus 358 g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~ 437 (527)
T TIGR03075 358 GRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPD 437 (527)
T ss_pred CCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCC
Confidence 000 126677777666655443
Q ss_pred ---CeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCCc
Q 009569 463 ---QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPFA 521 (532)
Q Consensus 463 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~~ 521 (532)
|.|.-+|+.++ +..-.......... ... ...+.+++.++.||.++.+|.++|+.
T Consensus 438 ~~~g~l~AiD~~tG-k~~W~~~~~~p~~~---~~l-~t~g~lvf~g~~~G~l~a~D~~TGe~ 494 (527)
T TIGR03075 438 DHMGSLIAWDPITG-KIVWEHKEDFPLWG---GVL-ATAGDLVFYGTLEGYFKAFDAKTGEE 494 (527)
T ss_pred CCceeEEEEeCCCC-ceeeEecCCCCCCC---cce-EECCcEEEEECCCCeEEEEECCCCCE
Confidence 34666777766 44444432211100 000 12445777788899999999999964
No 385
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.22 E-value=0.26 Score=48.81 Aligned_cols=191 Identities=15% Similarity=0.160 Sum_probs=93.8
Q ss_pred CCCEEEEEe-CCCeEEEEEeecCC-eeEEEEEeec---CC----CCeEEEEeCCCCCEEEEeeC------CCcEEEEECC
Q 009569 283 DGKYLASSS-KDQSAIIWEVKEDG-QVSLKHRLSG---HR----KPVFTVSWSPNDHQLLTCGQ------EEAIRRWDVN 347 (532)
Q Consensus 283 ~g~~las~s-~dg~i~iwd~~~~~-~~~~~~~~~~---h~----~~v~~l~~s~~~~~l~s~~~------dg~i~iwd~~ 347 (532)
+.++|+..+ ..+.|+|.|+.++. ..+..+.+.. +. ..-..+..-|+|..++++-. -|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 446777665 77899999998543 3334444432 11 12233445678888888632 2468889988
Q ss_pred CCcEEEEeeccC---CceEEEEEeeCCCeEEEEeC--------------------CCcEEEEECCCCeEEEeecCcc--C
Q 009569 348 SGECLHVYEKTG---VGLISCGWFLDGGGIFAGMT--------------------DKSICLWDLDGRELESWKGQKT--L 402 (532)
Q Consensus 348 ~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~--------------------dg~i~iwd~~~~~~~~~~~~~~--~ 402 (532)
+.+.....+... ..-+.+-|.|..+.++++.. ..++.+||+..++..+...... .
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 888777665432 23456778888788887542 3579999999988776654332 2
Q ss_pred ceEEEEEeeC--CCEEEE-EECCCeEEEEEC-CCCc---eeeee--------------------cCCceeEEEEcCCCCE
Q 009569 403 RISDMAITDD--GKRIIS-ICREAAILLLDR-EANF---ERWIE--------------------EEEVITSFSLSKDNKY 455 (532)
Q Consensus 403 ~v~~~~~s~~--~~~l~~-~~~dg~I~iwd~-~~~~---~~~~~--------------------~~~~i~~~~~sp~~~~ 455 (532)
-...+.|..+ ..+=++ +.-...|..|-- ..+. ...+. ...-|+.|.+|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 3556777654 333333 233444444433 4443 11111 0234799999999999
Q ss_pred EEEEec-CCeEEEEecCCC
Q 009569 456 LLVNLI-NQEIHLWSIESD 473 (532)
Q Consensus 456 l~~~~~-dg~i~iwd~~~~ 473 (532)
|.+++. .|.|+.||+...
T Consensus 326 LYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EEEEETTTTEEEEEE-SST
T ss_pred EEEEcccCCcEEEEecCCC
Confidence 987764 899999999875
No 386
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.14 E-value=0.0015 Score=40.26 Aligned_cols=37 Identities=35% Similarity=0.713 Sum_probs=32.9
Q ss_pred EEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEE
Q 009569 309 LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (532)
Q Consensus 309 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 345 (532)
....+..|...|.++.|++++..+++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4456678899999999999999999999999999996
No 387
>PHA02713 hypothetical protein; Provisional
Probab=97.12 E-value=0.019 Score=60.63 Aligned_cols=184 Identities=10% Similarity=0.050 Sum_probs=97.7
Q ss_pred CCCEEEEEeCC------CeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCC-----cEEEEECCCCcE
Q 009569 283 DGKYLASSSKD------QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE-----AIRRWDVNSGEC 351 (532)
Q Consensus 283 ~g~~las~s~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~ 351 (532)
++...+.||.+ ..+..||..++ .+.....+.........+.+ +++..+.||.++ ++..||..+.+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n-~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENK-IHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCC-eEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 66677777753 34677887653 23222222111112222222 577777777654 488899887654
Q ss_pred EE--EeeccCCceEEEEEeeCCCeEEEEeCCC-----------------------cEEEEECCCCeEEEeecCccCceEE
Q 009569 352 LH--VYEKTGVGLISCGWFLDGGGIFAGMTDK-----------------------SICLWDLDGRELESWKGQKTLRISD 406 (532)
Q Consensus 352 ~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~v~~ 406 (532)
.. .+.........+ .-++...+.|+.++ .+..||..+..-.............
T Consensus 380 ~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~ 457 (557)
T PHA02713 380 KMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP 457 (557)
T ss_pred EECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC
Confidence 32 111111111112 23677777777542 4777888765543333222212222
Q ss_pred EEEeeCCCEEEEEECC------CeEEEEECCC-Cc-eeeee---cCCceeEEEEcCCCCEEEEEecCC--eEEEEecCCC
Q 009569 407 MAITDDGKRIISICRE------AAILLLDREA-NF-ERWIE---EEEVITSFSLSKDNKYLLVNLINQ--EIHLWSIESD 473 (532)
Q Consensus 407 ~~~s~~~~~l~~~~~d------g~I~iwd~~~-~~-~~~~~---~~~~i~~~~~sp~~~~l~~~~~dg--~i~iwd~~~~ 473 (532)
-+..-+++..+.|+.+ ..+..||..+ .+ ..... .......+.+ +++..++|+.+| .+..||..+.
T Consensus 458 ~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 458 GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred cEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccc
Confidence 2233456777777654 2467899987 55 21111 1111222222 688888998888 6777887765
No 388
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.05 E-value=0.18 Score=46.70 Aligned_cols=231 Identities=15% Similarity=0.171 Sum_probs=129.7
Q ss_pred EEEEccC-CCEEEEEeCCCe-EEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCC-----CcEEEEECCCC
Q 009569 277 FLQFSHD-GKYLASSSKDQS-AIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-----EAIRRWDVNSG 349 (532)
Q Consensus 277 ~v~~s~~-g~~las~s~dg~-i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~ 349 (532)
.++|+|. ..-++.+-.-|+ ..++|..............+ ..-.-.=.|||||.+|+..-.| |.|-|||.+.+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~-RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG-RHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccC-ceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 5778884 445666665555 45788775543322221111 1111223689999999887544 68999999754
Q ss_pred -cEEEEeeccCCceEEEEEeeCCCeEEEEeC------C------------CcEEEEECCCCeEEEeec----CccCceEE
Q 009569 350 -ECLHVYEKTGVGLISCGWFLDGGGIFAGMT------D------------KSICLWDLDGRELESWKG----QKTLRISD 406 (532)
Q Consensus 350 -~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------d------------g~i~iwd~~~~~~~~~~~----~~~~~v~~ 406 (532)
+.+..+..|.-....+.|.+||+.++.+.. | -++.+.|..++.+..... .+...|..
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRH 230 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRH 230 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceee
Confidence 446677778777888999999999988642 0 122333322222221111 12236888
Q ss_pred EEEeeCCCEEEEEECCCe-----EEEEECCCCc-eee--------eecCCceeEEEEcCCCCEEEEEecCC-eEEEEecC
Q 009569 407 MAITDDGKRIISICREAA-----ILLLDREANF-ERW--------IEEEEVITSFSLSKDNKYLLVNLINQ-EIHLWSIE 471 (532)
Q Consensus 407 ~~~s~~~~~l~~~~~dg~-----I~iwd~~~~~-~~~--------~~~~~~i~~~~~sp~~~~l~~~~~dg-~i~iwd~~ 471 (532)
++..+||..++.+-..|. -.+=-...++ ..+ ......|-+++.+.+..+++..+-.| ...+||..
T Consensus 231 ld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~ 310 (366)
T COG3490 231 LDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA 310 (366)
T ss_pred eeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC
Confidence 888888876665544332 0111111111 111 12234577888887776776666544 67899999
Q ss_pred CCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeC
Q 009569 472 SDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLS 516 (532)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~ 516 (532)
++ ..+..-.-.... .+ .+...=++..+.+|.+.++..
T Consensus 311 tG-~vv~~a~l~daa----Gv---a~~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 311 TG-AVVSEAALPDAA----GV---AAAKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred CC-cEEecccccccc----cc---eeccCceEEecCCceEEeccc
Confidence 98 555433222211 01 122233445566788877643
No 389
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.94 E-value=0.81 Score=49.54 Aligned_cols=255 Identities=15% Similarity=0.140 Sum_probs=142.4
Q ss_pred cccEEEEEEccCC------CEEEEEeCCCeEEEEEeecCCeeEEEEEeec--CCCCeEEEEeCCCCCEEEEeeCCCcEEE
Q 009569 272 SDEVWFLQFSHDG------KYLASSSKDQSAIIWEVKEDGQVSLKHRLSG--HRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (532)
Q Consensus 272 ~~~V~~v~~s~~g------~~las~s~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~s~~~dg~i~i 343 (532)
..+|.|+.++|-| +++|.|.++..+.+.-...+........+.+ -...|....|-.|..+|+++..||.+.-
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 4679999999842 2788898887777665543333222222222 2234555666667889999999998876
Q ss_pred EEC--CCCcEEEE--eeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEE-EeeC--CCEE
Q 009569 344 WDV--NSGECLHV--YEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMA-ITDD--GKRI 416 (532)
Q Consensus 344 wd~--~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~-~s~~--~~~l 416 (532)
+.+ .+|..-.. ..-...++.=-.|+..++.-+.+..|.-..+|.-+++-+..-..-. .+..++ |+.+ +..+
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~k--ev~~~c~f~s~a~~d~l 687 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLK--EVNHMCPFNSDAYPDSL 687 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchH--HhhhhcccccccCCceE
Confidence 655 44432211 1122445555567666666666667777777776665443333222 233222 2222 2234
Q ss_pred EEEECCCeEEEEECCCCc---eeeeecCCceeEEEEcCCCCEEEEEecCC--------------eEEEEecCCCCcceeE
Q 009569 417 ISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQ--------------EIHLWSIESDPKLVSR 479 (532)
Q Consensus 417 ~~~~~dg~I~iwd~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~ 479 (532)
+.+ ..+.+.+.-++.-. .+..........+++.+....+.+.+... .++++|-.+. +.++.
T Consensus 688 ~~~-~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf-~vl~~ 765 (1096)
T KOG1897|consen 688 ASA-NGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTF-EVLSS 765 (1096)
T ss_pred EEe-cCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCce-eEEee
Confidence 443 44566666554433 33466667778888888555555544211 3566665554 32222
Q ss_pred --EeccccceEEEEEccCCCC-CcEEEEEeC----------CCcEEEEeCCC-CCceeeeccccCC
Q 009569 480 --YKGHKRARFVIRSCFGGFE-QAFIASGSE----------DSQVNIFLSFS-PFAKKIKYTSMKG 531 (532)
Q Consensus 480 --~~~~~~~~~~i~~~~~s~d-~~~l~sgs~----------dg~i~iw~~~~-~~~~~~~~~~~~~ 531 (532)
+........++.+.| ..| +.+++.|.. .|+|.+|.+.. +.++.+.-+.++|
T Consensus 766 hef~~~E~~~Si~s~~~-~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 766 HEFERNETALSIISCKF-TDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred ccccccceeeeeeeeee-cCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 122222333444556 545 777777752 58899998887 4444444333333
No 390
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.91 E-value=0.094 Score=48.43 Aligned_cols=187 Identities=13% Similarity=0.075 Sum_probs=111.3
Q ss_pred EEccCCCEEEEEeC-----CCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeC------C---------
Q 009569 279 QFSHDGKYLASSSK-----DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ------E--------- 338 (532)
Q Consensus 279 ~~s~~g~~las~s~-----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~------d--------- 338 (532)
.|||||.+|...-. -|.|-|||.. ..+..+-.+..|.-.-..+.|.+||+.++.+.. |
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r--~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAR--EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecc--cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchh
Confidence 59999999986533 3789999998 445677778888888889999999999887643 1
Q ss_pred ---CcEEEEECCCCcEEEEee----ccCCceEEEEEeeCCCeEEEEeCCCc------EEEEECCCCeEEEeecC------
Q 009569 339 ---EAIRRWDVNSGECLHVYE----KTGVGLISCGWFLDGGGIFAGMTDKS------ICLWDLDGRELESWKGQ------ 399 (532)
Q Consensus 339 ---g~i~iwd~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~------i~iwd~~~~~~~~~~~~------ 399 (532)
-++.+.|..+|+.+.+.. .+...|..++..+||...+.+-..|. +.-.-..++.+..+...
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~ 277 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAA 277 (366)
T ss_pred hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHH
Confidence 135555655665543322 22345666777777655444332221 00000112222111111
Q ss_pred ccCceEEEEEeeCCCEEEEEE-CCCeEEEEECCCCceeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEe
Q 009569 400 KTLRISDMAITDDGKRIISIC-REAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (532)
Q Consensus 400 ~~~~v~~~~~s~~~~~l~~~~-~dg~I~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd 469 (532)
-...|-+++.+.+..+++..+ ..+...+||..++.......-.....++-. ..-+++.+.+|.+.++.
T Consensus 278 ~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~daaGva~~--~~gf~vssg~G~~~~~s 346 (366)
T COG3490 278 FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDAAGVAAA--KGGFAVSSGQGRIIFYS 346 (366)
T ss_pred HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccccccceec--cCceEEecCCceEEecc
Confidence 112577888887666666655 455688999999884443333333344433 33355555688887774
No 391
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.0036 Score=67.17 Aligned_cols=98 Identities=14% Similarity=0.229 Sum_probs=75.6
Q ss_pred CCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCce
Q 009569 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL 362 (532)
Q Consensus 283 ~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i 362 (532)
.+..++.|+..|.+...|+..+ +.....-..-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..+..+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV 175 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCcc
Confidence 5567888999999999888732 32223333346799999999999999999999999999999999988888776655
Q ss_pred EEE---EEeeCCCeEEEEeCCCc
Q 009569 363 ISC---GWFLDGGGIFAGMTDKS 382 (532)
Q Consensus 363 ~~~---~~~~~~~~l~~~~~dg~ 382 (532)
+++ .+..++..++++...|.
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc
Confidence 544 44456667888877776
No 392
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.86 E-value=0.45 Score=45.37 Aligned_cols=198 Identities=15% Similarity=0.132 Sum_probs=115.4
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEE-----------EeecCCCCeEEEE--eCCCCCEEEEeeCCCcE
Q 009569 275 VWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKH-----------RLSGHRKPVFTVS--WSPNDHQLLTCGQEEAI 341 (532)
Q Consensus 275 V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~-----------~~~~h~~~v~~l~--~s~~~~~l~s~~~dg~i 341 (532)
|..+...|+-+.|++-+ |+.+.++++..-....... ........+...+ -...+...+.+.....|
T Consensus 38 I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI 116 (275)
T ss_pred EEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence 99999999777666554 5999999987432211000 0111223344444 12234444445555688
Q ss_pred EEEECCCC-----cEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCcc------------Cce
Q 009569 342 RRWDVNSG-----ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKT------------LRI 404 (532)
Q Consensus 342 ~iwd~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------~~v 404 (532)
.+|..... +..+.+.- ...+.+++|. ++.++.|..+ ...+.|+.++....+..... .++
T Consensus 117 ~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 192 (275)
T PF00780_consen 117 LIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPL 192 (275)
T ss_pred EEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCce
Confidence 88887653 34444443 4678889998 5678887754 47888998665555442211 122
Q ss_pred EEEEEeeCCCEEEEEECCCeEEEEECCCCc-e-eeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEec
Q 009569 405 SDMAITDDGKRIISICREAAILLLDREANF-E-RWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG 482 (532)
Q Consensus 405 ~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~-~-~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 482 (532)
..+.. +++.++++ .+..-.+.|..... . ..+.-...+.++++. ..||++.+. +.|.||++.++ ++++++..
T Consensus 193 ~~~~~-~~~e~Ll~--~~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~-~lvQ~i~~ 265 (275)
T PF00780_consen 193 GIFQL-SDNEFLLC--YDNIGVFVNKNGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETG-ELVQTIPL 265 (275)
T ss_pred EEEEe-CCceEEEE--ecceEEEEcCCCCcCcccEEEcCCchhEEEEE--CCEEEEECC-CEEEEEECcCC-cEEEEEEC
Confidence 23333 34455553 34444455554433 1 233334456667764 457877775 55999999999 88888875
Q ss_pred cc
Q 009569 483 HK 484 (532)
Q Consensus 483 ~~ 484 (532)
..
T Consensus 266 ~~ 267 (275)
T PF00780_consen 266 PN 267 (275)
T ss_pred CC
Confidence 54
No 393
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0069 Score=58.20 Aligned_cols=106 Identities=21% Similarity=0.276 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHHHhcChHHHHHHHhhhcCcccC-C------HHHHHHHHHHhcCChHHHHHHhhcCCCCChhHHHHHHHH
Q 009569 63 KSEFIKIITRALYSLGYDKSGALLEEESGIPMH-S------SVVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSASFL 135 (532)
Q Consensus 63 ~~e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~-~------~~~~~~~~~i~~G~w~~~~~~l~~l~~~~~~~~~~~~~~ 135 (532)
.+.++.+|..|+...|..+.+..|-+|+|.... . .++.++.+++..|+-.-|++.+..-.-.-......+.|.
T Consensus 116 ~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~s~LE~~ 195 (394)
T KOG2817|consen 116 SQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKSSSLEFK 195 (394)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccccccHHHH
Confidence 334599999999999999999999999999864 1 368889999999999988887765321111123367899
Q ss_pred HHHHHHHHHHhcCChh--HHHHHHhhccccCccCh
Q 009569 136 ILEQKFLELLRRDKVS--AALNSLRSEIVPLQINM 168 (532)
Q Consensus 136 i~~q~~lelle~~~~~--~a~~~L~~~l~pl~~~~ 168 (532)
+..+.|++++..|... +|++..|+.++|+..+.
T Consensus 196 Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~ 230 (394)
T KOG2817|consen 196 LHSLHFLSLIRGGKSDQREALRYARTHFAPFVADH 230 (394)
T ss_pred HHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccch
Confidence 9999999999998776 99999999999997654
No 394
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.83 E-value=0.046 Score=57.75 Aligned_cols=188 Identities=14% Similarity=0.057 Sum_probs=101.5
Q ss_pred CCCEEEEEeCC------CeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCC-----cEEEEECCCCcE
Q 009569 283 DGKYLASSSKD------QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE-----AIRRWDVNSGEC 351 (532)
Q Consensus 283 ~g~~las~s~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~ 351 (532)
++...++|+.| .++..||..++ ++.....+............ +|...++|+.|| +|-.||..+.+.
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~-~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W 408 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTN-QWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKW 408 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCC-ceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcc
Confidence 45677888888 35667777754 24333333322222222222 678888899886 488888877654
Q ss_pred EEEeeccCCceEEEEEeeCCCeEEEEeCCC------cEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCe-
Q 009569 352 LHVYEKTGVGLISCGWFLDGGGIFAGMTDK------SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAA- 424 (532)
Q Consensus 352 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~- 424 (532)
-..-......-..-...-+|...++|+.++ ++..||..++.-.....-...+...-...-++.+.+.|+.|+.
T Consensus 409 ~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~ 488 (571)
T KOG4441|consen 409 TPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTS 488 (571)
T ss_pred cccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCC
Confidence 222111111111111223788888888554 5678888776544433322212222223345677888887763
Q ss_pred ----EEEEECCCCc-eeeeecCCceeEEEEc-CCCCEEEEEecCC-----eEEEEecCCC
Q 009569 425 ----ILLLDREANF-ERWIEEEEVITSFSLS-KDNKYLLVNLINQ-----EIHLWSIESD 473 (532)
Q Consensus 425 ----I~iwd~~~~~-~~~~~~~~~i~~~~~s-p~~~~l~~~~~dg-----~i~iwd~~~~ 473 (532)
|..||..+.+ ........+...+... -+++..++|+.|| +|..||..+.
T Consensus 489 ~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 489 ALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence 7889998887 2222222222222111 2467777887666 3555555443
No 395
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.80 E-value=0.53 Score=45.23 Aligned_cols=232 Identities=12% Similarity=0.086 Sum_probs=107.6
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEEeecCC-eeEEEEEeecC--CCCeEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 009569 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG-QVSLKHRLSGH--RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS 348 (532)
Q Consensus 272 ~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~-~~~~~~~~~~h--~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 348 (532)
...+..|.|..+.+-+|+|. .+. |+...+++ .......-... .-...++.|..+ ..++ ++..+ +.+...+.
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~~g-~ll~T~Dg 89 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGEPG-LLLHTTDG 89 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEETT-EEEEESST
T ss_pred CCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcCCc-eEEEecCC
Confidence 44788999996666666665 454 45554443 33322211111 123567777543 3344 44444 33444444
Q ss_pred CcEEEEee---ccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeE
Q 009569 349 GECLHVYE---KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAI 425 (532)
Q Consensus 349 ~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I 425 (532)
|+.=..+. ...+....+....++...+ ++..|.|+.=.=.+..-..........+..+..++||.+++++......
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~ 168 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFY 168 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEE
T ss_pred CCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEE
Confidence 54322221 1223344455544543333 4445655443222333333333344578999999999988887666666
Q ss_pred EEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeE-Eecc-ccceEEEEEccCCCCCcE
Q 009569 426 LLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSR-YKGH-KRARFVIRSCFGGFEQAF 501 (532)
Q Consensus 426 ~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~-~~~~~~i~~~~~s~d~~~ 501 (532)
.-||.-... .........|.+|.|+|++.+.+++ ..|.|++=+.......-.. +... .....++.+.| .+++..
T Consensus 169 ~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~-~~~~~~ 246 (302)
T PF14870_consen 169 SSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAY-RPPNEI 246 (302)
T ss_dssp EEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEE-SSSS-E
T ss_pred EEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEe-cCCCCE
Confidence 788865433 3334456789999999998776655 7888888772221111111 1111 22333577777 666665
Q ss_pred EEEEeCCCcEEE
Q 009569 502 IASGSEDSQVNI 513 (532)
Q Consensus 502 l~sgs~dg~i~i 513 (532)
.++| ..|.++.
T Consensus 247 wa~g-g~G~l~~ 257 (302)
T PF14870_consen 247 WAVG-GSGTLLV 257 (302)
T ss_dssp EEEE-STT-EEE
T ss_pred EEEe-CCccEEE
Confidence 5544 4555543
No 396
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.77 E-value=1.1 Score=48.56 Aligned_cols=235 Identities=15% Similarity=0.112 Sum_probs=129.4
Q ss_pred ccEEEEEEccC----CCEEEEEe---CCCeEEEEEeecCCeeEEEEEeecCCCCeEEEE--eCCC-CCEEEEeeCCCcEE
Q 009569 273 DEVWFLQFSHD----GKYLASSS---KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVS--WSPN-DHQLLTCGQEEAIR 342 (532)
Q Consensus 273 ~~V~~v~~s~~----g~~las~s---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~--~s~~-~~~l~s~~~dg~i~ 342 (532)
++|..++.-.. +..++||+ .||++++....-+-.......+.| -..++.+. +.++ .++|+.+-.+ .-+
T Consensus 354 gPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~~-eTr 431 (1096)
T KOG1897|consen 354 GPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFIS-ETR 431 (1096)
T ss_pred cceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEecc-ceE
Confidence 57777766552 23566654 589999986542211112233444 44566766 4332 2355554333 334
Q ss_pred EEECCCCcEEEEee--ccCCceEEEEEee-CCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEE
Q 009569 343 RWDVNSGECLHVYE--KTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISI 419 (532)
Q Consensus 343 iwd~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 419 (532)
+..+.. + +.... +-......+..+- .++.++=.. ...|++++-. +....|.... .++..+.+.+...++.+
T Consensus 432 vl~i~~-e-~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-s~~iRl~ss~-~~~~~W~~p~--~~ti~~~~~n~sqVvvA 505 (1096)
T KOG1897|consen 432 VLNISE-E-VEETEDPGFSTDEQTIFCSTINGNQLVQVT-SNSIRLVSSA-GLRSEWRPPG--KITIGVVSANASQVVVA 505 (1096)
T ss_pred EEEEcc-c-eEEeccccccccCceEEEEccCCceEEEEe-cccEEEEcch-hhhhcccCCC--ceEEEEEeecceEEEEe
Confidence 444432 2 11111 1111222222222 333333222 2457777755 3444555444 45556666666688888
Q ss_pred ECCCeEEEEECCCCc---eeeeecCCceeEEEEcCCC------CEEEEEecCCeEEEEec-CCCCcceeE--Eeccccce
Q 009569 420 CREAAILLLDREANF---ERWIEEEEVITSFSLSKDN------KYLLVNLINQEIHLWSI-ESDPKLVSR--YKGHKRAR 487 (532)
Q Consensus 420 ~~dg~I~iwd~~~~~---~~~~~~~~~i~~~~~sp~~------~~l~~~~~dg~i~iwd~-~~~~~~~~~--~~~~~~~~ 487 (532)
+.++.+...++.... .........|.|+.++|-| +++++|..+..+.+.-. ... ..+.. +.+..-+.
T Consensus 506 ~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~-~~~~~~~l~~~~iPR 584 (1096)
T KOG1897|consen 506 GGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDL-ILITHEQLSGEIIPR 584 (1096)
T ss_pred cCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCc-ceeeeeccCCCccch
Confidence 888888888876665 2333446789999999842 37888887766544433 332 33322 23333455
Q ss_pred EEEEEccCCCCCcEEEEEeCCCcEEEEeCC
Q 009569 488 FVIRSCFGGFEQAFIASGSEDSQVNIFLSF 517 (532)
Q Consensus 488 ~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~ 517 (532)
.++-.++ --|..+|.++..||.+.-|.+.
T Consensus 585 SIl~~~~-e~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 585 SILLTTF-EGDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred heeeEEe-eccceEEEEEcCCceEEEEEEE
Confidence 5666666 5568899999999998766554
No 397
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.77 E-value=0.39 Score=43.22 Aligned_cols=213 Identities=14% Similarity=0.144 Sum_probs=114.8
Q ss_pred CEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCC---CEEEEeeCCCcEEEEECCC--CcEEEEee---
Q 009569 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND---HQLLTCGQEEAIRRWDVNS--GECLHVYE--- 356 (532)
Q Consensus 285 ~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~---~~l~s~~~dg~i~iwd~~~--~~~~~~~~--- 356 (532)
.++.+--..|.|.-||+..+.- ....+.+.. +.++.+--.+ .+.+.++..-.|.-||... -....++.
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v--~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~ 103 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKV--YRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQ 103 (310)
T ss_pred eEEEEEeccCceehhhhhhhhe--EEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccC
Confidence 3444434456677788875321 112222221 2222221112 3444455444566677432 22222211
Q ss_pred --ccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccC--------ceEEEEEeeCCCEEEE-EECCCeE
Q 009569 357 --KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTL--------RISDMAITDDGKRIIS-ICREAAI 425 (532)
Q Consensus 357 --~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------~v~~~~~s~~~~~l~~-~~~dg~I 425 (532)
........-..+|+|++++-.-.|-. ..+....+.+..+...|.- --+.++|+.+.+.+.. -+.+-.|
T Consensus 104 ~d~kknR~NDgkvdP~Gryy~GtMad~~-~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 104 PDRKKNRLNDGKVDPDGRYYGGTMADFG-DDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred chHHhcccccCccCCCCceeeeeecccc-ccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEE
Confidence 11334555667899988432222211 1222223444444433321 2356888887776554 4566778
Q ss_pred EEEE--CCCCc----eeeee-------cCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEE
Q 009569 426 LLLD--REANF----ERWIE-------EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRS 492 (532)
Q Consensus 426 ~iwd--~~~~~----~~~~~-------~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~ 492 (532)
.-|| ..++. ..++. .....-.+++..+|.+.+++-+.++|...|..++ +.+.+++-.... +.++
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG-K~L~eiklPt~q--itsc 259 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG-KILLEIKLPTPQ--ITSC 259 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC-cEEEEEEcCCCc--eEEE
Confidence 7777 55543 11111 1112345666778888888888999999999998 888888877666 4558
Q ss_pred ccCCCCCcEEEEE
Q 009569 493 CFGGFEQAFIASG 505 (532)
Q Consensus 493 ~~~s~d~~~l~sg 505 (532)
||..++-..+++.
T Consensus 260 cFgGkn~d~~yvT 272 (310)
T KOG4499|consen 260 CFGGKNLDILYVT 272 (310)
T ss_pred EecCCCccEEEEE
Confidence 9988866655543
No 398
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.03 Score=55.84 Aligned_cols=143 Identities=19% Similarity=0.227 Sum_probs=95.1
Q ss_pred CCCEEE-EEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCC-------EEEEeeCCCcEEEEECCCCc--EE
Q 009569 283 DGKYLA-SSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH-------QLLTCGQEEAIRRWDVNSGE--CL 352 (532)
Q Consensus 283 ~g~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-------~l~s~~~dg~i~iwd~~~~~--~~ 352 (532)
+.++|. ++.....++-.|++.| +.+..+.-|.. |.-+.+.|+.+ .=+.|-.|..|.-||.+-.. .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~G---KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERG---KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccc---eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 344444 4555566777788876 45566666655 77788888653 22455668889999987432 22
Q ss_pred EEeecc----CCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEE
Q 009569 353 HVYEKT----GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLL 428 (532)
Q Consensus 353 ~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iw 428 (532)
..-+.| .....|.+-..+ .++++|+.+|.|++||--+....+..+.-..+|..+..+.+|++|++.+. ..+.+.
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi 497 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLI 497 (644)
T ss_pred eeeeccccccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEE
Confidence 222222 233445554444 48999999999999998666556666666679999999999999887554 466666
Q ss_pred ECC
Q 009569 429 DRE 431 (532)
Q Consensus 429 d~~ 431 (532)
|+.
T Consensus 498 ~t~ 500 (644)
T KOG2395|consen 498 DTL 500 (644)
T ss_pred EEe
Confidence 653
No 399
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.70 E-value=0.003 Score=56.14 Aligned_cols=138 Identities=12% Similarity=0.107 Sum_probs=78.1
Q ss_pred EEEEeCCCcEEEEECCCCeEEEeecCccCceEE-EEEeeCCCEEEEEECCCeEEEEECCCCc---eeeeecCCce-eEEE
Q 009569 374 IFAGMTDKSICLWDLDGRELESWKGQKTLRISD-MAITDDGKRIISICREAAILLLDREANF---ERWIEEEEVI-TSFS 448 (532)
Q Consensus 374 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~I~iwd~~~~~---~~~~~~~~~i-~~~~ 448 (532)
+...+.||.|.-++++...+..-... .+.+ .....-+..+++|+.+|.|++|.....- .........| ..+.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~---~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSER---FIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhh---hhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 34456677777777654322111100 1111 1112235679999999999999886322 2222222233 2233
Q ss_pred EcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccc-cceEEEEEccCCCCCcEEEEE--eCCCcEEEEeCCC
Q 009569 449 LSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK-RARFVIRSCFGGFEQAFIASG--SEDSQVNIFLSFS 518 (532)
Q Consensus 449 ~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~~s~d~~~l~sg--s~dg~i~iw~~~~ 518 (532)
-..++.+..+++.+|.|+.|++.-. +.+.....|. .+..- ... ...+.+|+.+ |.|..++.|++..
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~-k~~g~~g~h~~~~~e~--~iv-v~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPN-KVLGYVGQHNFESGEE--LIV-VGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccccceeEEeccCCceeeeccccC-ceeeeeccccCCCcce--eEE-ecCCceEEeeccccchhhhhcchhh
Confidence 3345668899999999999999876 5555554454 22111 111 3345666666 7777788888765
No 400
>PHA03098 kelch-like protein; Provisional
Probab=96.70 E-value=0.075 Score=56.23 Aligned_cols=191 Identities=8% Similarity=0.010 Sum_probs=96.1
Q ss_pred CCCEEEEeeCCC------cEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCC-----CcEEEEECCCCeEEEe
Q 009569 328 NDHQLLTCGQEE------AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD-----KSICLWDLDGRELESW 396 (532)
Q Consensus 328 ~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~ 396 (532)
++..++.|+.++ .+..||..+.+....-.............-++..++.|+.+ ..+..||..++.-...
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 456666666542 57788887776532211111111111122367777888765 3577888876544333
Q ss_pred ecCccCceEEEEEeeCCCEEEEEECC------CeEEEEECCCCc-eeeeecCC--ceeEEEEcCCCCEEEEEecC-----
Q 009569 397 KGQKTLRISDMAITDDGKRIISICRE------AAILLLDREANF-ERWIEEEE--VITSFSLSKDNKYLLVNLIN----- 462 (532)
Q Consensus 397 ~~~~~~~v~~~~~s~~~~~l~~~~~d------g~I~iwd~~~~~-~~~~~~~~--~i~~~~~sp~~~~l~~~~~d----- 462 (532)
...........+..-+++.++.|+.+ ..+..||..+.. ........ .-.++ ...+++.++.|+.+
T Consensus 374 ~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~ 452 (534)
T PHA03098 374 PPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGISYIDNI 452 (534)
T ss_pred CCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCccCCCCC
Confidence 22111111112223356677776632 458899988766 22111111 11122 22356666776643
Q ss_pred ---CeEEEEecCCC-CcceeEEeccccceEEEEEccCCCCCcEEEEEeCC-----CcEEEEeCCCCCceee
Q 009569 463 ---QEIHLWSIESD-PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED-----SQVNIFLSFSPFAKKI 524 (532)
Q Consensus 463 ---g~i~iwd~~~~-~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~d-----g~i~iw~~~~~~~~~~ 524 (532)
..+.+||..++ +..+..+...... ...+ ..++.+++.|+.+ +.|.+||..+.....+
T Consensus 453 ~~~~~v~~yd~~~~~W~~~~~~~~~r~~---~~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 518 (534)
T PHA03098 453 KVYNIVESYNPVTNKWTELSSLNFPRIN---ASLC--IFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLF 518 (534)
T ss_pred cccceEEEecCCCCceeeCCCCCccccc---ceEE--EECCEEEEEcCCcCCcccceeEEEeCCCCEEEec
Confidence 23888898765 1112111111111 1111 2256777777654 4789999988765443
No 401
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.65 E-value=0.45 Score=44.44 Aligned_cols=163 Identities=14% Similarity=0.178 Sum_probs=101.0
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 009569 269 EAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS 348 (532)
Q Consensus 269 ~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 348 (532)
.+-...|.++.|+|+.+.|++......-.||=...| .+-....+.+.. ..-.+.+..++.+.++--.++.+.++.+..
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~G-dlirtiPL~g~~-DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEG-DLIRTIPLTGFS-DPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCC-ceEEEecccccC-ChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 344556999999999998888776666666544444 333333344422 234677887888888877788888888765
Q ss_pred CcEEEE----------eeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCe--E-EEeecC-------ccCceEEEE
Q 009569 349 GECLHV----------YEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE--L-ESWKGQ-------KTLRISDMA 408 (532)
Q Consensus 349 ~~~~~~----------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~-~~~~~~-------~~~~v~~~~ 408 (532)
...+.. ....+...-.++|.|....|+.+-..+-+.||...... + ...... .-..|.++.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 532211 11225567889999999999988888877777665321 0 000000 011466677
Q ss_pred EeeC-CCEEEEEECCCeEEEEECCCC
Q 009569 409 ITDD-GKRIISICREAAILLLDREAN 433 (532)
Q Consensus 409 ~s~~-~~~l~~~~~dg~I~iwd~~~~ 433 (532)
|++. +.+++.+..++.+.-.|....
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC
Confidence 7763 445555556666666666554
No 402
>PHA03098 kelch-like protein; Provisional
Probab=96.63 E-value=0.1 Score=55.15 Aligned_cols=187 Identities=12% Similarity=0.054 Sum_probs=92.7
Q ss_pred cCCCEEEEEeCCC------eEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCC-----CcEEEEECCCCc
Q 009569 282 HDGKYLASSSKDQ------SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-----EAIRRWDVNSGE 350 (532)
Q Consensus 282 ~~g~~las~s~dg------~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~~ 350 (532)
.++..++.|+.++ .+..||..++ .+.....+.........+.+ ++...+.||.+ ..+..||..+.+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTK-SWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCC-eeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 3566667776542 4667777643 23222222111122222222 56677777765 357788887765
Q ss_pred EEEEeeccCCceEEEEEeeCCCeEEEEeCC------CcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECC--
Q 009569 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMTD------KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE-- 422 (532)
Q Consensus 351 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-- 422 (532)
....-.............-+++.++.|+.+ +.+..||..+..-..............+...++..++.|+.+
T Consensus 370 W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 370 WREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYI 449 (534)
T ss_pred eeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCC
Confidence 432111111111111122366777777632 358889987755433322211111112233456666666542
Q ss_pred ------CeEEEEECCCCc-eeeee--c-CCceeEEEEcCCCCEEEEEecC-----CeEEEEecCCC
Q 009569 423 ------AAILLLDREANF-ERWIE--E-EEVITSFSLSKDNKYLLVNLIN-----QEIHLWSIESD 473 (532)
Q Consensus 423 ------g~I~iwd~~~~~-~~~~~--~-~~~i~~~~~sp~~~~l~~~~~d-----g~i~iwd~~~~ 473 (532)
..+.+||..+.+ ..... . ......+.+ +++.++.|+.+ +.+.+||..+.
T Consensus 450 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 238899988876 22211 1 111112222 66777777654 36778887654
No 403
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.0075 Score=64.80 Aligned_cols=101 Identities=16% Similarity=0.180 Sum_probs=75.2
Q ss_pred CCCEEEEEECCCeEEEEECCCCc---eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccce-
Q 009569 412 DGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRAR- 487 (532)
Q Consensus 412 ~~~~l~~~~~dg~I~iwd~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~- 487 (532)
.+..++.|+..|.+...|....- ..-....++|++++|+.+|+.++.|-.+|.|.+||+..+ ++++.+..|..+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~-k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA-KILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC-cceeeeeecCCccc
Confidence 35578888999999998887743 222345688999999999999999999999999999987 7777776665442
Q ss_pred EEEEEccCCCCCcEEEEEeCCCcEEEEeC
Q 009569 488 FVIRSCFGGFEQAFIASGSEDSQVNIFLS 516 (532)
Q Consensus 488 ~~i~~~~~s~d~~~l~sgs~dg~i~iw~~ 516 (532)
.++...+ ..++..++++..-|. +|+.
T Consensus 177 ~vi~v~~-t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGR-TSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEE-eCCCcEEEEccCCCc--eEEE
Confidence 3444555 344557788877776 5554
No 404
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.51 E-value=0.68 Score=42.79 Aligned_cols=195 Identities=13% Similarity=0.026 Sum_probs=125.7
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEE
Q 009569 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH 353 (532)
Q Consensus 274 ~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 353 (532)
.-..++-.|||..-.++...+.|--.|-.+++. ...--+....-..|..-|||..-++=+.. .|.-.|-++.+...
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev---~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~ 138 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEV---ETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR 138 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCce---EEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE
Confidence 445777888998888887777777777776532 12222333445667778888766654333 56666666654322
Q ss_pred ---EeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEEC
Q 009569 354 ---VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDR 430 (532)
Q Consensus 354 ---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~ 430 (532)
..+..........|.+.|++-+++.. |.---.|...+.+..+.......-+.|+.+|||...++.-.+..|...|.
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp 217 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDP 217 (353)
T ss_pred eecccccCCCcccceeeCCCccEEEeecc-ccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccc
Confidence 12233566788899999998888752 32222344445555555555557889999999999888888888888888
Q ss_pred CCCc-eeeeec---CCceeEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 009569 431 EANF-ERWIEE---EEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (532)
Q Consensus 431 ~~~~-~~~~~~---~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~ 473 (532)
.+.. ..+... ...-..+.-+|.|+.-++....+.++-+|-...
T Consensus 218 ~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~ 264 (353)
T COG4257 218 FAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT 264 (353)
T ss_pred ccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccc
Confidence 7766 222221 223455666777877777666777888876553
No 405
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.50 E-value=0.24 Score=50.52 Aligned_cols=168 Identities=14% Similarity=0.157 Sum_probs=95.5
Q ss_pred ccEEEEEEccCCCEEEEEe--CCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCC----CCEEEEeeCCCcEEEEEC
Q 009569 273 DEVWFLQFSHDGKYLASSS--KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN----DHQLLTCGQEEAIRRWDV 346 (532)
Q Consensus 273 ~~V~~v~~s~~g~~las~s--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~----~~~l~s~~~dg~i~iwd~ 346 (532)
.+|..++|....+.+.|.- .+|.+++=|. ..+ +.-..|..++|.|- ...|++.-....|.||.+
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds------~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS------KVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCc------cEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 4678889964333333431 2333332221 122 23345889999994 335556677789999998
Q ss_pred C-----CCcEEEEeecc-----CCceEEEEEeeCCCeEEEEeCCCcEEEEECC--CCeEEEeecCccCceEEEEEeeCCC
Q 009569 347 N-----SGECLHVYEKT-----GVGLISCGWFLDGGGIFAGMTDKSICLWDLD--GRELESWKGQKTLRISDMAITDDGK 414 (532)
Q Consensus 347 ~-----~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~~~ 414 (532)
. +++.+.....+ .--...+.|+|....+++-.....-.++++. +..+..-.. ..+.|.|.+|.+||+
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQ 168 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCC
Confidence 4 22322221111 1112357899998888776655554566664 344433333 334899999999999
Q ss_pred EEEEEE-CCCeEEEEECCCCc------eeeeecCCceeEEEEcC
Q 009569 415 RIISIC-REAAILLLDREANF------ERWIEEEEVITSFSLSK 451 (532)
Q Consensus 415 ~l~~~~-~dg~I~iwd~~~~~------~~~~~~~~~i~~~~~sp 451 (532)
.++++- ..=.-++||-..+. ...+.-.+.|.+|.-.-
T Consensus 169 RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~ 212 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATV 212 (671)
T ss_pred EEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEec
Confidence 877654 33457788865543 22334445555554443
No 406
>PRK10115 protease 2; Provisional
Probab=96.40 E-value=2 Score=46.85 Aligned_cols=192 Identities=9% Similarity=0.029 Sum_probs=98.2
Q ss_pred CeEEEEeCCCCCEEEEeeCC-----CcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCC------CcEEEEE
Q 009569 319 PVFTVSWSPNDHQLLTCGQE-----EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD------KSICLWD 387 (532)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~iwd 387 (532)
.+..+.||||+++|+.+... ..|++.|+.+|..+...-... . ..++|.+|++.|+.+..+ ..|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 46678999999988776432 269999998886332211111 1 458999999877765432 3678888
Q ss_pred CCCC--eEEEeecCccCceE-EEEEeeCCCEEEEEE---CCCeEEEEECCC--Cc-eeeeecCCc-eeEEEEcCCCCEEE
Q 009569 388 LDGR--ELESWKGQKTLRIS-DMAITDDGKRIISIC---REAAILLLDREA--NF-ERWIEEEEV-ITSFSLSKDNKYLL 457 (532)
Q Consensus 388 ~~~~--~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~---~dg~I~iwd~~~--~~-~~~~~~~~~-i~~~~~sp~~~~l~ 457 (532)
+.+. +-..+......... .+..+.++++++..+ .++.+.+|+... .. ......... ...+. +..+.+++
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~ 284 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYL 284 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEE
Confidence 8765 22222222221233 333444788766554 345788888532 22 222333222 22222 32333333
Q ss_pred EEecC---CeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeC
Q 009569 458 VNLIN---QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLS 516 (532)
Q Consensus 458 ~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~ 516 (532)
....+ ..|...++... .....+..+.....+-.+.+ . .+.++++...+|.-.++-+
T Consensus 285 ~tn~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~i~~~~~-~-~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 285 RSNRHGKNFGLYRTRVRDE-QQWEELIPPRENIMLEGFTL-F-TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred EEcCCCCCceEEEecCCCc-ccCeEEECCCCCCEEEEEEE-E-CCEEEEEEEeCCEEEEEEE
Confidence 33222 23444444422 22234444432222223333 2 3456667777777555443
No 407
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.35 E-value=0.94 Score=42.61 Aligned_cols=146 Identities=14% Similarity=0.081 Sum_probs=89.0
Q ss_pred cEEEEEEccCCCEEEEEe-CCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEE-CCCCcE
Q 009569 274 EVWFLQFSHDGKYLASSS-KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD-VNSGEC 351 (532)
Q Consensus 274 ~V~~v~~s~~g~~las~s-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd-~~~~~~ 351 (532)
.+.+.+++++|+.+|... .++.-.+|-...++...... . ...+....|++++...+....+....++. ..++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--T--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--c--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 688999999999887655 23333444444333322222 2 23678889999987777666666666663 333332
Q ss_pred E-EEeecc--CCceEEEEEeeCCCeEEEEe---CCCcEEEEECC---CC---e---EEEeecCccCceEEEEEeeCCCEE
Q 009569 352 L-HVYEKT--GVGLISCGWFLDGGGIFAGM---TDKSICLWDLD---GR---E---LESWKGQKTLRISDMAITDDGKRI 416 (532)
Q Consensus 352 ~-~~~~~~--~~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~---~~---~---~~~~~~~~~~~v~~~~~s~~~~~l 416 (532)
. ...... ...|..+.++|||..++... .++.|.+--+. .+ . ...........+.+++|.+++.++
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence 2 122211 12799999999999988765 34677776542 12 1 112222223378999999999877
Q ss_pred EEEECCC
Q 009569 417 ISICREA 423 (532)
Q Consensus 417 ~~~~~dg 423 (532)
+.+...+
T Consensus 181 V~~~~~~ 187 (253)
T PF10647_consen 181 VLGRSAG 187 (253)
T ss_pred EEeCCCC
Confidence 7765443
No 408
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.30 E-value=0.7 Score=48.56 Aligned_cols=188 Identities=12% Similarity=0.101 Sum_probs=112.2
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEeeccC-CceE---E-------EEEeeCCCeEEEEeCCCcEEEEECCCCeEEEee
Q 009569 329 DHQLLTCGQEEAIRRWDVNSGECLHVYEKTG-VGLI---S-------CGWFLDGGGIFAGMTDKSICLWDLDGRELESWK 397 (532)
Q Consensus 329 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~---~-------~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 397 (532)
+..++.++.++.|.-.|..+|+.+..+.... ..+. + +.+ .+..++.++.|+.+.-.|.+++++.-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4567777788899999999999887765321 1111 1 122 2456778888999999999876654322
Q ss_pred cCcc-CceEEEEEee---CCCEEEEEE------CCCeEEEEECCCCceeeeecC--------------------------
Q 009569 398 GQKT-LRISDMAITD---DGKRIISIC------REAAILLLDREANFERWIEEE-------------------------- 441 (532)
Q Consensus 398 ~~~~-~~v~~~~~s~---~~~~l~~~~------~dg~I~iwd~~~~~~~~~~~~-------------------------- 441 (532)
.... ..-..+.-+| ++ .++++. .+|.|.-+|.++++.....+.
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 2110 0001111112 34 455543 268999999998872222110
Q ss_pred -------Cc-eeEEEEcCCCCEEEEEecC-----C-----------eEEEEecCCCCcceeEEeccccceEEEE------
Q 009569 442 -------EV-ITSFSLSKDNKYLLVNLIN-----Q-----------EIHLWSIESDPKLVSRYKGHKRARFVIR------ 491 (532)
Q Consensus 442 -------~~-i~~~~~sp~~~~l~~~~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~~~~~i~------ 491 (532)
.. -..+++.|...+++.+..+ + +|.-.|++++ +..-.|+......+-..
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG-~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTG-KIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccC-CEEEeeeCCCCCCccccCCCCcE
Confidence 01 1245777777777776522 2 5777888888 66666654322111111
Q ss_pred -EccCCCCCc---EEEEEeCCCcEEEEeCCCCCc
Q 009569 492 -SCFGGFEQA---FIASGSEDSQVNIFLSFSPFA 521 (532)
Q Consensus 492 -~~~~s~d~~---~l~sgs~dg~i~iw~~~~~~~ 521 (532)
+.. ..+|+ .++.++.+|.+++.|..+|+.
T Consensus 305 l~d~-~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 305 LFDL-KKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEe-ccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 111 23565 788999999999999999875
No 409
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.24 E-value=0.14 Score=51.17 Aligned_cols=144 Identities=14% Similarity=0.103 Sum_probs=84.7
Q ss_pred cEEEEEEccCCCEEEEEe-----------CCC-eEEEEEeec-CCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCc
Q 009569 274 EVWFLQFSHDGKYLASSS-----------KDQ-SAIIWEVKE-DGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (532)
Q Consensus 274 ~V~~v~~s~~g~~las~s-----------~dg-~i~iwd~~~-~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 340 (532)
....|+|.++|+++++-. ..+ .|.+++-.+ ++.......+...-.....+++.+++ .++ ++....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence 456889999999777642 223 676665432 23333334444444456789999888 444 444433
Q ss_pred EEEEECCC-----CcEEE---Eeec----cCCceEEEEEeeCCCeEEEEeC-------------------CCcEEEEECC
Q 009569 341 IRRWDVNS-----GECLH---VYEK----TGVGLISCGWFLDGGGIFAGMT-------------------DKSICLWDLD 389 (532)
Q Consensus 341 i~iwd~~~-----~~~~~---~~~~----~~~~i~~~~~~~~~~~l~~~~~-------------------dg~i~iwd~~ 389 (532)
.++.|... ++... .+.. +......+.|.|||.+.++-+. .|.|.-+|.+
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 33435432 12111 1222 1234678999999987665441 1456677777
Q ss_pred CCeEEEeecCccCceEEEEEeeCCCEEEEEE
Q 009569 390 GRELESWKGQKTLRISDMAITDDGKRIISIC 420 (532)
Q Consensus 390 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 420 (532)
+.....+..... ....++|+|+|+++++-.
T Consensus 173 g~~~e~~a~G~r-np~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 173 GGKLRVVAHGFQ-NPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCeEEEEecCcC-CCccceECCCCCEEEEcc
Confidence 766655544432 568899999998876644
No 410
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.23 E-value=1.6 Score=44.03 Aligned_cols=148 Identities=7% Similarity=0.022 Sum_probs=92.0
Q ss_pred CCCEEEEEeCCCeEEEEEeecCCe-eEEEEEeecCCCCeEEEEeCC----CCCEEEEeeCCCcEEEEECCC--Cc-----
Q 009569 283 DGKYLASSSKDQSAIIWEVKEDGQ-VSLKHRLSGHRKPVFTVSWSP----NDHQLLTCGQEEAIRRWDVNS--GE----- 350 (532)
Q Consensus 283 ~g~~las~s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~----~~~~l~s~~~dg~i~iwd~~~--~~----- 350 (532)
+...|++||..|.++||+...++. ...+..-..-..+|..+..-+ .....++.-.-..+.+|.+.. |.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 346899999999999999864331 111111123456787776532 222233334556788888721 11
Q ss_pred --EEEEeecc--CCceEEEEEee----C-CCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEEC
Q 009569 351 --CLHVYEKT--GVGLISCGWFL----D-GGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (532)
Q Consensus 351 --~~~~~~~~--~~~i~~~~~~~----~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 421 (532)
.+..+..| ......+++-| . ..++.+-+-||.+.+|+-+.-.........- -...++|.+....+++++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~l-lPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFL-LPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCC-CCcCeEEeecCCEEEEecC
Confidence 12222223 22333444433 2 3578888999999999988766555554432 4566888998889999999
Q ss_pred CCeEEEEECC
Q 009569 422 EAAILLLDRE 431 (532)
Q Consensus 422 dg~I~iwd~~ 431 (532)
+..+..|...
T Consensus 195 s~~l~~Yky~ 204 (418)
T PF14727_consen 195 SWTLECYKYQ 204 (418)
T ss_pred ceeEEEecHH
Confidence 9999988763
No 411
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.21 E-value=0.89 Score=42.03 Aligned_cols=193 Identities=11% Similarity=-0.020 Sum_probs=130.3
Q ss_pred CeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeec
Q 009569 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG 398 (532)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 398 (532)
.-..++-.|||..-+++...+.|--.|-.+|+....--+.......+..-|||..-++-+.. .|.-.|-++.++..+..
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 34567888999988999889999999999998776655666667778888888776664433 56666766666655543
Q ss_pred ---CccCceEEEEEeeCCCEEEEEECC---------CeEEEEECCCCceeeeecCCceeEEEEcCCCCEEEEEecCCeEE
Q 009569 399 ---QKTLRISDMAITDDGKRIISICRE---------AAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIH 466 (532)
Q Consensus 399 ---~~~~~v~~~~~s~~~~~l~~~~~d---------g~I~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~ 466 (532)
+.........|.+.|++-+++... +.|++|+.. .......|+..|||..-++.-.++.|-
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP--------qG~gpyGi~atpdGsvwyaslagnaia 213 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP--------QGGGPYGICATPDGSVWYASLAGNAIA 213 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC--------CCCCCcceEECCCCcEEEEeccccceE
Confidence 233467888999999988887532 234444432 234567899999999888877788888
Q ss_pred EEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCCce
Q 009569 467 LWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPFAK 522 (532)
Q Consensus 467 iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~~~ 522 (532)
..|..++ .-..+..........+-.+.+|-|..-+|-...+.++.||..+....
T Consensus 214 ridp~~~--~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~ 267 (353)
T COG4257 214 RIDPFAG--HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWI 267 (353)
T ss_pred EcccccC--CcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccce
Confidence 8887665 22222222111111223344777888788777888888887765433
No 412
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.20 E-value=0.83 Score=45.42 Aligned_cols=180 Identities=16% Similarity=0.203 Sum_probs=87.5
Q ss_pred EEEccCCCEEEEE--eCC----CeEEEEEeecCCeeEEEEEeecC---CCCeEEEEeCCCCCEEEEeeC-----------
Q 009569 278 LQFSHDGKYLASS--SKD----QSAIIWEVKEDGQVSLKHRLSGH---RKPVFTVSWSPNDHQLLTCGQ----------- 337 (532)
Q Consensus 278 v~~s~~g~~las~--s~d----g~i~iwd~~~~~~~~~~~~~~~h---~~~v~~l~~s~~~~~l~s~~~----------- 337 (532)
+.--|+|++++++ ..+ |-+.+.|-++ +......... ..--..+.|.|..+.++|...
T Consensus 135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t---f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~ 211 (461)
T PF05694_consen 135 VHCLPDGRIMISALGDADGNGPGGFVLLDGET---FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFN 211 (461)
T ss_dssp EEE-SS--EEEEEEEETTS-S--EEEEE-TTT-----EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---
T ss_pred eeecCCccEEEEeccCCCCCCCCcEEEEcCcc---ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCC
Confidence 3445689888874 222 4466666543 2333333321 233457778888788887642
Q ss_pred ---------CCcEEEEECCCCcEEEEeeccCC--ceEEEEEee--CCCeEEEEe-CCCcEEEEEC-CCC-----eEEEee
Q 009569 338 ---------EEAIRRWDVNSGECLHVYEKTGV--GLISCGWFL--DGGGIFAGM-TDKSICLWDL-DGR-----ELESWK 397 (532)
Q Consensus 338 ---------dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~~~--~~~~l~~~~-~dg~i~iwd~-~~~-----~~~~~~ 397 (532)
..++.+||+.+.+.++++.-... .+..+.|.. +..+=++|+ -..+|..|-- +.+ ++..+.
T Consensus 212 ~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip 291 (461)
T PF05694_consen 212 PEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIP 291 (461)
T ss_dssp TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE-
T ss_pred hhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECC
Confidence 35799999999999999875532 355666654 344433333 3445555433 222 122221
Q ss_pred cC--------c--------cCceEEEEEeeCCCEEEEEE-CCCeEEEEECCCCc-eeee-----ec--------------
Q 009569 398 GQ--------K--------TLRISDMAITDDGKRIISIC-REAAILLLDREANF-ERWI-----EE-------------- 440 (532)
Q Consensus 398 ~~--------~--------~~~v~~~~~s~~~~~l~~~~-~dg~I~iwd~~~~~-~~~~-----~~-------------- 440 (532)
.. . ..-|++|..|.|.++|..++ .+|.|+.||+.... .++. +.
T Consensus 292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~ 371 (461)
T PF05694_consen 292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKR 371 (461)
T ss_dssp -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS----
T ss_pred CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccc
Confidence 11 0 12579999999999988877 78999999998765 2221 11
Q ss_pred -CCceeEEEEcCCCCEEEEEe
Q 009569 441 -EEVITSFSLSKDNKYLLVNL 460 (532)
Q Consensus 441 -~~~i~~~~~sp~~~~l~~~~ 460 (532)
.+...-+.+|.||+.|.+.+
T Consensus 372 l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 372 LRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp --S----EEE-TTSSEEEEE-
T ss_pred cCCCCCeEEEccCCeEEEEEe
Confidence 12346688899998888765
No 413
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.19 E-value=1.3 Score=48.53 Aligned_cols=189 Identities=10% Similarity=0.070 Sum_probs=111.7
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEeeccCCc--------eEEEEEee----------------CCCeEEEEeCCCcEE
Q 009569 329 DHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVG--------LISCGWFL----------------DGGGIFAGMTDKSIC 384 (532)
Q Consensus 329 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--------i~~~~~~~----------------~~~~l~~~~~dg~i~ 384 (532)
+..++.|+.++.|.-.|..+|+.+..+...... ...+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 557778888899999999999988777543210 11222221 345788899999999
Q ss_pred EEECCCCeEEEeecCccCce-------------EEEEEee--CCCEEEEEEC----------CCeEEEEECCCCceeeee
Q 009569 385 LWDLDGRELESWKGQKTLRI-------------SDMAITD--DGKRIISICR----------EAAILLLDREANFERWIE 439 (532)
Q Consensus 385 iwd~~~~~~~~~~~~~~~~v-------------~~~~~s~--~~~~l~~~~~----------dg~I~iwd~~~~~~~~~~ 439 (532)
-.|.++++......... .| ..+.-.| .+..+++++. +|.|+-+|.++++.....
T Consensus 274 ALDA~TGk~~W~fg~~G-~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNG-TVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCCC-ceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 99998766553322111 11 0111112 1345666642 688999999998833221
Q ss_pred cC-------------------Cce-eEEEEcCCCCEEEEEec------------------CCeEEEEecCCCCcceeEEe
Q 009569 440 EE-------------------EVI-TSFSLSKDNKYLLVNLI------------------NQEIHLWSIESDPKLVSRYK 481 (532)
Q Consensus 440 ~~-------------------~~i-~~~~~sp~~~~l~~~~~------------------dg~i~iwd~~~~~~~~~~~~ 481 (532)
+. ..+ ..+++++....++.+.. .+.|.-.|.+++ +..-.++
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TG-k~~W~~Q 431 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTG-KERWVFQ 431 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCC-ceEEEec
Confidence 10 001 34556665555554321 245677777777 6666665
Q ss_pred ccccc---------eEEEEEccCCCCCc---EEEEEeCCCcEEEEeCCCCCc
Q 009569 482 GHKRA---------RFVIRSCFGGFEQA---FIASGSEDSQVNIFLSFSPFA 521 (532)
Q Consensus 482 ~~~~~---------~~~i~~~~~s~d~~---~l~sgs~dg~i~iw~~~~~~~ 521 (532)
..... ...+... ..+|+ .++.++.+|.+++.|..+|+.
T Consensus 432 ~~~hD~WD~D~~~~p~L~d~~--~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 432 TVHHDLWDMDVPAQPSLVDLP--DADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred ccCCccccccccCCceEEeee--cCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 42211 1111111 12553 789999999999999999864
No 414
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.16 E-value=1.5 Score=43.13 Aligned_cols=235 Identities=12% Similarity=0.075 Sum_probs=112.7
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEe----ecCCCCeEEEEeCCC---CCEEEEeeC-C-------
Q 009569 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRL----SGHRKPVFTVSWSPN---DHQLLTCGQ-E------- 338 (532)
Q Consensus 274 ~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~----~~h~~~v~~l~~s~~---~~~l~s~~~-d------- 338 (532)
..+.|+|.|||+++++ ...|.|++++ ..+.....+..+ .........++++|+ ..+|..... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4579999999988776 4599999998 323221222222 233456789999994 233333322 1
Q ss_pred -CcEEEEECCCC--c-----EE-EEeec---cCCceEEEEEeeCCCeEEEEeCC-------------CcEEEEECCCCe-
Q 009569 339 -EAIRRWDVNSG--E-----CL-HVYEK---TGVGLISCGWFLDGGGIFAGMTD-------------KSICLWDLDGRE- 392 (532)
Q Consensus 339 -g~i~iwd~~~~--~-----~~-~~~~~---~~~~i~~~~~~~~~~~l~~~~~d-------------g~i~iwd~~~~~- 392 (532)
..|.-|....+ . .+ ..+.. ....-..+.|.|||.+.++.+.. |.|.-.+..+..
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 24555554433 1 11 11122 23445679999999776665432 233333433220
Q ss_pred ------------EEEeecCccCceEEEEEeeC-CCEEEEE-ECCCeEEEEECCCCc------------------------
Q 009569 393 ------------LESWKGQKTLRISDMAITDD-GKRIISI-CREAAILLLDREANF------------------------ 434 (532)
Q Consensus 393 ------------~~~~~~~~~~~v~~~~~s~~-~~~l~~~-~~dg~I~iwd~~~~~------------------------ 434 (532)
...+..... ....++|+|. |.++++= +.++.=.|.-+..+.
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 001111111 4578999998 5544332 122221121111111
Q ss_pred ------eeeeecCCceeEEEEcC-------CCCEEEEEecCCeEEEEecCCCCcceeEEec-cccceEEEEEccCCCCCc
Q 009569 435 ------ERWIEEEEVITSFSLSK-------DNKYLLVNLINQEIHLWSIESDPKLVSRYKG-HKRARFVIRSCFGGFEQA 500 (532)
Q Consensus 435 ------~~~~~~~~~i~~~~~sp-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~i~~~~~s~d~~ 500 (532)
.....+...++.+.|.. .+.++++....+.|....+.........-.- .........+.+ .|||.
T Consensus 240 ~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~-~pDG~ 318 (331)
T PF07995_consen 240 PGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQ-GPDGA 318 (331)
T ss_dssp TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEE-ETTSE
T ss_pred CCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEE-cCCCe
Confidence 00112334566666654 3456666666677888877644222211110 111112344555 78888
Q ss_pred EEEEEeCCCcEE
Q 009569 501 FIASGSEDSQVN 512 (532)
Q Consensus 501 ~l~sgs~dg~i~ 512 (532)
+.++-+.+|.|+
T Consensus 319 Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEE-TTTTEE
T ss_pred EEEEECCCCeEe
Confidence 777777777775
No 415
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.10 E-value=1.3 Score=41.83 Aligned_cols=212 Identities=11% Similarity=0.122 Sum_probs=122.3
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEeecC----CeeEEEEEeec-----CCCCeEEEEeCCCCC------------EE
Q 009569 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKED----GQVSLKHRLSG-----HRKPVFTVSWSPNDH------------QL 332 (532)
Q Consensus 274 ~V~~v~~s~~g~~las~s~dg~i~iwd~~~~----~~~~~~~~~~~-----h~~~v~~l~~s~~~~------------~l 332 (532)
.-|.++|+|.+.+-++....+...+||.... .......++.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 4589999999988888888889999998621 11122333332 123567777764322 36
Q ss_pred EEeeCCCcEEEEECCCCcE-----EEEeecc--CCceEEEEEee--CCCeEEEEe-CCCcEEEEECCCCeEEE---eecC
Q 009569 333 LTCGQEEAIRRWDVNSGEC-----LHVYEKT--GVGLISCGWFL--DGGGIFAGM-TDKSICLWDLDGRELES---WKGQ 399 (532)
Q Consensus 333 ~s~~~dg~i~iwd~~~~~~-----~~~~~~~--~~~i~~~~~~~--~~~~l~~~~-~dg~i~iwd~~~~~~~~---~~~~ 399 (532)
+.+++||+|.-|...-+.. ...+... ......+++.. .+.+|+.+. ..++|.+||-.-..+.. +...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7789999999998632221 1222211 22233455543 345555554 67889998865332211 0000
Q ss_pred --ccC-------------ceEEEEEeeCCCEEEEEECCCeEEEEECCCCceeeeecC---CceeEEEEcC------CCCE
Q 009569 400 --KTL-------------RISDMAITDDGKRIISICREAAILLLDREANFERWIEEE---EVITSFSLSK------DNKY 455 (532)
Q Consensus 400 --~~~-------------~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~~~~~~~~---~~i~~~~~sp------~~~~ 455 (532)
..+ .|+-..-.+++..=+.+..-|.|-+||....-.+...+. ...+.|+..| .+.+
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 000 011111122222222333447899999887764433333 3456677765 5677
Q ss_pred EEEEecCCeEEEEecCCCCcceeEEeccccc
Q 009569 456 LLVNLINQEIHLWSIESDPKLVSRYKGHKRA 486 (532)
Q Consensus 456 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 486 (532)
|+-.-.||+|..||..++ +.+..+......
T Consensus 264 LVGNFGDG~InaFD~~sG-~~~g~L~~~~G~ 293 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSG-AQLGQLLDPDNH 293 (336)
T ss_pred EEeecCCceeEEecCCCC-ceeeeecCCCCC
Confidence 887778999999999887 666666655443
No 416
>PHA02790 Kelch-like protein; Provisional
Probab=96.04 E-value=0.55 Score=48.86 Aligned_cols=184 Identities=9% Similarity=-0.025 Sum_probs=89.5
Q ss_pred CCCEEEEEeCCC-----eEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCC--CcEEEEECCCCcEEEEe
Q 009569 283 DGKYLASSSKDQ-----SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE--EAIRRWDVNSGECLHVY 355 (532)
Q Consensus 283 ~g~~las~s~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~ 355 (532)
++..+++|+.++ ++..||..++ .+.....+.........+. -++...+.|+.+ ..+..||..+++....-
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~-~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISN-NWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCC-EEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 455667777543 4667777643 3322222222111222222 356777777754 36888887765433221
Q ss_pred eccCCceEEEEEeeCCCeEEEEeCCC---cEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCC
Q 009569 356 EKTGVGLISCGWFLDGGGIFAGMTDK---SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA 432 (532)
Q Consensus 356 ~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~ 432 (532)
.............-+|+..+.|+.++ .+..||.++..-..........-...+..-+++..+.| |.+.+||.++
T Consensus 348 ~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 348 SLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESS 424 (480)
T ss_pred CCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCC
Confidence 11111111112223677778877553 47788887655443322221111122223456666665 3577899887
Q ss_pred Cc-eeeeecC--CceeEEEEcCCCCEEEEEecC-----CeEEEEecCCC
Q 009569 433 NF-ERWIEEE--EVITSFSLSKDNKYLLVNLIN-----QEIHLWSIESD 473 (532)
Q Consensus 433 ~~-~~~~~~~--~~i~~~~~sp~~~~l~~~~~d-----g~i~iwd~~~~ 473 (532)
.+ ....... ..-.+++. -+++..++|+.+ ..+..||..++
T Consensus 425 ~~W~~~~~m~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 425 NTWTLIDDPIYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CcEeEcCCCCCCccccEEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 76 2221111 11112222 256777777654 23555555443
No 417
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.02 E-value=0.022 Score=50.78 Aligned_cols=104 Identities=10% Similarity=0.102 Sum_probs=67.7
Q ss_pred CCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEE-EEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccC-Cc
Q 009569 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT-VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTG-VG 361 (532)
Q Consensus 284 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~-l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~ 361 (532)
+..++.|+.+|.|.+|+....+.. ...+..-...|.+ +.--.++.+..+++.||.|+.|++.-++.+.....|+ .+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~--~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAH--SDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES 147 (238)
T ss_pred CceEEeecccceEEEecCCccchH--HHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCC
Confidence 456888999999999998732211 1111111222322 2223355688899999999999999888887777776 45
Q ss_pred eEEEEEeeCCCeEEEE--eCCCcEEEEECC
Q 009569 362 LISCGWFLDGGGIFAG--MTDKSICLWDLD 389 (532)
Q Consensus 362 i~~~~~~~~~~~l~~~--~~dg~i~iwd~~ 389 (532)
+.....+..++.+.++ +.|..++.|++.
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchh
Confidence 5555555556666666 667777777764
No 418
>PHA02790 Kelch-like protein; Provisional
Probab=95.98 E-value=0.55 Score=48.87 Aligned_cols=187 Identities=9% Similarity=-0.033 Sum_probs=93.6
Q ss_pred CCCEEEEeeCCC-----cEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCC--CcEEEEECCCCeEEEeecCc
Q 009569 328 NDHQLLTCGQEE-----AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD--KSICLWDLDGRELESWKGQK 400 (532)
Q Consensus 328 ~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~ 400 (532)
++..++.|+.++ .+..||..+++....-.............-++...++|+.+ ..+..||..++.-.....-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 345556666542 57778887765433221111111111122367777888754 35788887665443333222
Q ss_pred cCceEEEEEeeCCCEEEEEECC---CeEEEEECCCCc-eeeeecCCce-eEEEEcCCCCEEEEEecCCeEEEEecCCC-C
Q 009569 401 TLRISDMAITDDGKRIISICRE---AAILLLDREANF-ERWIEEEEVI-TSFSLSKDNKYLLVNLINQEIHLWSIESD-P 474 (532)
Q Consensus 401 ~~~v~~~~~s~~~~~l~~~~~d---g~I~iwd~~~~~-~~~~~~~~~i-~~~~~sp~~~~l~~~~~dg~i~iwd~~~~-~ 474 (532)
.......+..-+|+..+.|+.+ ..+..||.++.. ........+. ...+..-+++..+.|+ .+.+||..++ +
T Consensus 351 ~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W 427 (480)
T PHA02790 351 KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFYCESSNTW 427 (480)
T ss_pred CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC---ceEEecCCCCcE
Confidence 2121222233467777777754 347789988766 2211111111 1111233566666663 4678888665 1
Q ss_pred cceeEEeccccceEEEEEccCCCCCcEEEEEeCC-----CcEEEEeCCCCCce
Q 009569 475 KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED-----SQVNIFLSFSPFAK 522 (532)
Q Consensus 475 ~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~d-----g~i~iw~~~~~~~~ 522 (532)
..+..+...... ..++ -.++++.+.||.+ ..|..||..++...
T Consensus 428 ~~~~~m~~~r~~---~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~ 475 (480)
T PHA02790 428 TLIDDPIYPRDN---PELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWN 475 (480)
T ss_pred eEcCCCCCCccc---cEEE--EECCEEEEECCcCCCcccceEEEEECCCCeEE
Confidence 222222111111 1122 2366777777754 35888888886543
No 419
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.91 E-value=0.26 Score=50.24 Aligned_cols=146 Identities=14% Similarity=0.209 Sum_probs=90.0
Q ss_pred CCeEEEEeCCCCCEEEEee---CCCcEEEEECCCCcEEEEeeccCCceEEEEEeeC----CCeEEEEeCCCcEEEEECC-
Q 009569 318 KPVFTVSWSPNDHQLLTCG---QEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD----GGGIFAGMTDKSICLWDLD- 389 (532)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg~i~iwd~~- 389 (532)
.++..++|. ||+.++-.. .+|.+++=|- ..+..| ..|..+.|.|- ...+++.-..+.|.+|.+-
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 478889997 565544322 2344433221 233333 34888999984 3356666677899999984
Q ss_pred -C----CeEEEeecCcc----CceEEEEEeeCCCEEEEEECCCeEEEEECCCCc---eeeeecCCceeEEEEcCCCCEEE
Q 009569 390 -G----RELESWKGQKT----LRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLL 457 (532)
Q Consensus 390 -~----~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~---~~~~~~~~~i~~~~~sp~~~~l~ 457 (532)
. +.+......-. ---..+.|+|....+++-.....-.+++++... ..-+...+-|.|.+|.+||+.|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 1 21221111110 012457899998888877766666667766544 23346678899999999998887
Q ss_pred EEecC-CeEEEEecC
Q 009569 458 VNLIN-QEIHLWSIE 471 (532)
Q Consensus 458 ~~~~d-g~i~iwd~~ 471 (532)
++-.. =.-++||-.
T Consensus 172 VAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSA 186 (671)
T ss_pred EEeCCeEEEEEecCc
Confidence 76533 346788854
No 420
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.80 E-value=0.034 Score=36.73 Aligned_cols=35 Identities=11% Similarity=0.194 Sum_probs=30.4
Q ss_pred CCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcE
Q 009569 316 HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351 (532)
Q Consensus 316 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 351 (532)
....|..++|+|...+||.+..+|.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3456999999999999999999999999998 5543
No 421
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.79 E-value=0.031 Score=36.93 Aligned_cols=31 Identities=10% Similarity=0.285 Sum_probs=28.4
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEEee
Q 009569 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVK 302 (532)
Q Consensus 272 ~~~V~~v~~s~~g~~las~s~dg~i~iwd~~ 302 (532)
...|.+++|+|...+||.|+.+|.|.++.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999984
No 422
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.74 E-value=1.8 Score=40.66 Aligned_cols=143 Identities=14% Similarity=0.093 Sum_probs=89.5
Q ss_pred CeEEEEeCCCCCEEEEee---CCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEE-CCCC--e
Q 009569 319 PVFTVSWSPNDHQLLTCG---QEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD-LDGR--E 392 (532)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~--~ 392 (532)
.+.+.++++++..++... ....+.++.. +....... ....+..-.|.+++...+....+....++. .... .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999877766 2334555554 33332222 233677889999977777666666666663 2222 1
Q ss_pred EEEeecCcc-CceEEEEEeeCCCEEEEEE---CCCeEEEEECCCCc----------eeee-ecCCceeEEEEcCCCCEEE
Q 009569 393 LESWKGQKT-LRISDMAITDDGKRIISIC---REAAILLLDREANF----------ERWI-EEEEVITSFSLSKDNKYLL 457 (532)
Q Consensus 393 ~~~~~~~~~-~~v~~~~~s~~~~~l~~~~---~dg~I~iwd~~~~~----------~~~~-~~~~~i~~~~~sp~~~~l~ 457 (532)
......... ..|..+.++|||..++... .++.|.+--+.... .... .....++.++|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 112222211 1799999999999888776 35777776543211 1111 2346789999999998888
Q ss_pred EEecCCe
Q 009569 458 VNLINQE 464 (532)
Q Consensus 458 ~~~~dg~ 464 (532)
.+...+.
T Consensus 182 ~~~~~~~ 188 (253)
T PF10647_consen 182 LGRSAGG 188 (253)
T ss_pred EeCCCCC
Confidence 7765443
No 423
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.67 E-value=0.58 Score=46.79 Aligned_cols=140 Identities=14% Similarity=0.157 Sum_probs=81.7
Q ss_pred CeEEEEeCCCCCEEEEee-----------CCC-cEEEEECCC--Cc--EEEEeeccCCceEEEEEeeCCCeEEEEeCCCc
Q 009569 319 PVFTVSWSPNDHQLLTCG-----------QEE-AIRRWDVNS--GE--CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS 382 (532)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~-----------~dg-~i~iwd~~~--~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 382 (532)
....++|.++|+.+++.. ..+ .|.+++-.+ |+ ....+...-.....+++.+++ ++++.....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeE
Confidence 456789999998777643 223 677776543 32 233444334456788998888 444454443
Q ss_pred EEEEECCCC-----e---EEE-eecC---ccCceEEEEEeeCCCEEEEEEC-------------------CCeEEEEECC
Q 009569 383 ICLWDLDGR-----E---LES-WKGQ---KTLRISDMAITDDGKRIISICR-------------------EAAILLLDRE 431 (532)
Q Consensus 383 i~iwd~~~~-----~---~~~-~~~~---~~~~v~~~~~s~~~~~l~~~~~-------------------dg~I~iwd~~ 431 (532)
.++.|..+. . +.. +... .......++|.|||.+.++.+. .+.|.-+|..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 344455321 1 111 1111 1225788999999987665442 1457777776
Q ss_pred CCceeeeec-CCceeEEEEcCCCCEEEEEe
Q 009569 432 ANFERWIEE-EEVITSFSLSKDNKYLLVNL 460 (532)
Q Consensus 432 ~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~ 460 (532)
+........ -.....++|+|+|+++++-.
T Consensus 173 g~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 173 GGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 665333322 23357899999998877644
No 424
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.66 E-value=1.9 Score=40.25 Aligned_cols=180 Identities=14% Similarity=0.123 Sum_probs=107.8
Q ss_pred cEEEEEEccCCCEEEEEeCCC--eEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcE
Q 009569 274 EVWFLQFSHDGKYLASSSKDQ--SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351 (532)
Q Consensus 274 ~V~~v~~s~~g~~las~s~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 351 (532)
-.-.+.|.++|.++-+.+.-| .|+.+|+.++... ....+.. .----.++.. +++...-.-.++...+||..+.+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~-~~~~l~~-~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVL-QSVPLPP-RYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEE-EEEE-TT-T--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEE-EEEECCc-cccceeEEEE-CCEEEEEEecCCeEEEEccccceE
Confidence 345678878888888877666 6888888876432 2222221 1111233333 233333445688999999999999
Q ss_pred EEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEee-----cCccCceEEEEEeeCCCEEEEEECCCeEE
Q 009569 352 LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK-----GQKTLRISDMAITDDGKRIISICREAAIL 426 (532)
Q Consensus 352 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~I~ 426 (532)
+..+.-. +.=+.++ .++..|+.+.....++++|..+-...... ...-..++.+.|- +|...|=.-....|.
T Consensus 123 ~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~ 198 (264)
T PF05096_consen 123 IGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIV 198 (264)
T ss_dssp EEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEE
Confidence 8888644 3446666 47788888777788999998764322221 1112256677775 566666666777888
Q ss_pred EEECCCCc-eeee----------------ecCCceeEEEEcCCCCEEEEEe
Q 009569 427 LLDREANF-ERWI----------------EEEEVITSFSLSKDNKYLLVNL 460 (532)
Q Consensus 427 iwd~~~~~-~~~~----------------~~~~~i~~~~~sp~~~~l~~~~ 460 (532)
..|..++. .... ....-.+.|+++|..+.+++.+
T Consensus 199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 89998887 2211 1134588999999877666655
No 425
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.50 E-value=0.19 Score=54.84 Aligned_cols=144 Identities=8% Similarity=0.065 Sum_probs=91.2
Q ss_pred cEEEEEEccCCCEEEEE--eCCCeEEEEEeecCCee--------EEEEEeecCCCCeEEEEeCCCC-CEEEEeeCCCcEE
Q 009569 274 EVWFLQFSHDGKYLASS--SKDQSAIIWEVKEDGQV--------SLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIR 342 (532)
Q Consensus 274 ~V~~v~~s~~g~~las~--s~dg~i~iwd~~~~~~~--------~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~ 342 (532)
+|..+...+|++..++. +.+-.|..||+.+-... ....+......-..++.|+|.- ...+.+..|+.|.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 56666667777765543 34447889998742111 0111112223345678898853 3456677888888
Q ss_pred EEECCCCcE-EEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeec---CccCceEEEEEeeCCCEEEE
Q 009569 343 RWDVNSGEC-LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG---QKTLRISDMAITDDGKRIIS 418 (532)
Q Consensus 343 iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~ 418 (532)
+..+..... +..+ ......++++|+|.|+.+++|-..|++.-|.........+.. .....|.+++|-....++++
T Consensus 182 V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 887753322 2222 235568999999999999999999999988876543333222 12347999999877666654
No 426
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.46 E-value=1.1 Score=45.12 Aligned_cols=140 Identities=14% Similarity=0.202 Sum_probs=94.0
Q ss_pred CCCEEE-EeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCC-------eEEEEeCCCcEEEEECC--CCeEEEee
Q 009569 328 NDHQLL-TCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGG-------GIFAGMTDKSICLWDLD--GRELESWK 397 (532)
Q Consensus 328 ~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~i~iwd~~--~~~~~~~~ 397 (532)
+..+|+ .++....++-.|++.|+.+.....+... -+.|.|+.+ .-++|-++..|.-.|.+ +..+....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 444444 4455567888899999999888877664 466777532 24566677777777765 33333222
Q ss_pred cCc---cCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecC
Q 009569 398 GQK---TLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (532)
Q Consensus 398 ~~~---~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~ 471 (532)
... .....+..-. ...++++++..|-|++||.-... ..+.+....|..+..+.+|+++++.| ...+.+.|++
T Consensus 556 sKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 556 SKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred ehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 111 1123333323 34589999999999999976554 45566778899999999999999888 5667787775
No 427
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.42 E-value=2.3 Score=39.80 Aligned_cols=151 Identities=15% Similarity=0.184 Sum_probs=97.8
Q ss_pred CCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCC---eE
Q 009569 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR---EL 393 (532)
Q Consensus 317 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~ 393 (532)
.+-+..+.++ +++...+..+.-++|.|+.+.............=..-.|.-.|++..++..|.-+.+.|+.+. .+
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCcee
Confidence 3456677776 557777788888999999876654433322211122334456889999887777788898642 22
Q ss_pred EEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc-eeeeec---CCceeEEEEcCCCCEEEEEecCCeEEEEe
Q 009569 394 ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEE---EEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (532)
Q Consensus 394 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~-~~~~~~---~~~i~~~~~sp~~~~l~~~~~dg~i~iwd 469 (532)
.-...........++.| |++-..+..|+-+.+.|+.+.. ..++++ ...+.++..+++..+++... .-+.+-|
T Consensus 164 agrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvlivd 239 (370)
T COG5276 164 AGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLIVD 239 (370)
T ss_pred eeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEEEe
Confidence 22222233234566776 6788888899999999998877 555543 33678888888777776654 2355666
Q ss_pred cCCC
Q 009569 470 IESD 473 (532)
Q Consensus 470 ~~~~ 473 (532)
..+.
T Consensus 240 ~s~~ 243 (370)
T COG5276 240 VSGP 243 (370)
T ss_pred cCCC
Confidence 5544
No 428
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=0.14 Score=55.76 Aligned_cols=139 Identities=9% Similarity=-0.042 Sum_probs=87.2
Q ss_pred CCceEEEEEeeCCCeEEEEe--CCCcEEEEECCCCeEEE-----------eecCccCceEEEEEeeCCC-EEEEEECCCe
Q 009569 359 GVGLISCGWFLDGGGIFAGM--TDKSICLWDLDGRELES-----------WKGQKTLRISDMAITDDGK-RIISICREAA 424 (532)
Q Consensus 359 ~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~-----------~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~ 424 (532)
...+..+..++|+...++.. .+-.|+.||++.-.... ..........++.|+|.-. ..+++..|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 34455666677766655543 33378999997422111 1112223567888888543 3556678888
Q ss_pred EEEEECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccc--cceEEEEEccCCCCC
Q 009569 425 ILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK--RARFVIRSCFGGFEQ 499 (532)
Q Consensus 425 I~iwd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~i~~~~~s~d~ 499 (532)
|++..+.... ..........++++|+|.|+.+++|...|++.-|...- +....+.+.. ....+.+++|.++..
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l--eik~~ip~Pp~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL--EIKSEIPEPPVEENYRVLSVTWLSTQE 256 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccc--ceeecccCCCcCCCcceeEEEEeccee
Confidence 8888775544 33345567789999999999999999999998887543 2333333221 134566677766544
No 429
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.36 E-value=2.4 Score=39.54 Aligned_cols=166 Identities=11% Similarity=0.033 Sum_probs=98.6
Q ss_pred EEEEeecCCC-CeEEEEeCCCCCEEEEeeCCC--cEEEEECCCCcEEEEeeccC-CceEEEEEeeCCCeEEEEeCCCcEE
Q 009569 309 LKHRLSGHRK-PVFTVSWSPNDHQLLTCGQEE--AIRRWDVNSGECLHVYEKTG-VGLISCGWFLDGGGIFAGMTDKSIC 384 (532)
Q Consensus 309 ~~~~~~~h~~-~v~~l~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~ 384 (532)
.+..+..... -...+.|..++.++-+.+.-| .|+.+|+.+++......-.. .---.++.. +++.....-.++...
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEE
Confidence 3444443333 345688877888888888876 79999999998776554332 111233333 344555566789999
Q ss_pred EEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc----eeeeecCC---ceeEEEEcCCCCEEE
Q 009569 385 LWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF----ERWIEEEE---VITSFSLSKDNKYLL 457 (532)
Q Consensus 385 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~----~~~~~~~~---~i~~~~~sp~~~~l~ 457 (532)
+||.++-+......... .=+.++ .|++.|+.+.....++++|..+.+ ........ .++-+.+- +|...+
T Consensus 114 ~yd~~tl~~~~~~~y~~-EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyA 189 (264)
T PF05096_consen 114 VYDPNTLKKIGTFPYPG-EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYA 189 (264)
T ss_dssp EEETTTTEEEEEEE-SS-S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEE
T ss_pred EEccccceEEEEEecCC-cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEE
Confidence 99998755444333322 445555 567788888888899999998765 11222222 35556665 555444
Q ss_pred EEecCCeEEEEecCCCCcceeEE
Q 009569 458 VNLINQEIHLWSIESDPKLVSRY 480 (532)
Q Consensus 458 ~~~~dg~i~iwd~~~~~~~~~~~ 480 (532)
=.-....|...|..++ +.+..+
T Consensus 190 NVW~td~I~~Idp~tG-~V~~~i 211 (264)
T PF05096_consen 190 NVWQTDRIVRIDPETG-KVVGWI 211 (264)
T ss_dssp EETTSSEEEEEETTT--BEEEEE
T ss_pred EeCCCCeEEEEeCCCC-eEEEEE
Confidence 4445667888888887 665554
No 430
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.35 E-value=4.7 Score=43.85 Aligned_cols=74 Identities=14% Similarity=0.192 Sum_probs=52.0
Q ss_pred CCCeEEEEeCCCCCEEEEeeCCCcEEEEECC---------CCcE---EEEe--------eccCCceEEEEEeeC---CCe
Q 009569 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN---------SGEC---LHVY--------EKTGVGLISCGWFLD---GGG 373 (532)
Q Consensus 317 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~---------~~~~---~~~~--------~~~~~~i~~~~~~~~---~~~ 373 (532)
.-.|..+.++|+|.+++..|..|.+.+.=.+ .|+. .+++ ......|..+.|+|. +..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3468899999999999998887644332221 1111 1111 133567889999995 588
Q ss_pred EEEEeCCCcEEEEECCC
Q 009569 374 IFAGMTDKSICLWDLDG 390 (532)
Q Consensus 374 l~~~~~dg~i~iwd~~~ 390 (532)
|++-+.|+++++||+..
T Consensus 164 l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEEecCCEEEEEecCC
Confidence 99999999999999963
No 431
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.34 E-value=5.6 Score=43.66 Aligned_cols=191 Identities=13% Similarity=0.126 Sum_probs=106.2
Q ss_pred CCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCC--------CeEEEEeC----------------CCCCEEEEeeCCC
Q 009569 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK--------PVFTVSWS----------------PNDHQLLTCGQEE 339 (532)
Q Consensus 284 g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~--------~v~~l~~s----------------~~~~~l~s~~~dg 339 (532)
+..|..++.++.|.-.|..+++. +..+..... ....+.+. ..+..++.++.|+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~---lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg 270 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKE---KWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA 270 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcE---EEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCC
Confidence 45666677778888888776643 222221110 01122221 1345788889999
Q ss_pred cEEEEECCCCcEEEEeeccCCce-------------EEEEEee--CCCeEEEEeC----------CCcEEEEECCCCeEE
Q 009569 340 AIRRWDVNSGECLHVYEKTGVGL-------------ISCGWFL--DGGGIFAGMT----------DKSICLWDLDGRELE 394 (532)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~i-------------~~~~~~~--~~~~l~~~~~----------dg~i~iwd~~~~~~~ 394 (532)
.+.-.|.++|+.+..+... +.+ ....-.| .+..+++|+. +|.|+-+|.+++++.
T Consensus 271 ~LiALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred eEEEEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 9999999999988766421 111 0111112 2445666643 688999999876653
Q ss_pred Eeec-C----------------ccCce-EEEEEeeCCCEEEEEE------------------CCCeEEEEECCCCceeee
Q 009569 395 SWKG-Q----------------KTLRI-SDMAITDDGKRIISIC------------------REAAILLLDREANFERWI 438 (532)
Q Consensus 395 ~~~~-~----------------~~~~v-~~~~~s~~~~~l~~~~------------------~dg~I~iwd~~~~~~~~~ 438 (532)
-... . ....+ ..+++++....++.+. ..+.|.-.|.++++....
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~ 429 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV 429 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence 2211 0 00011 2345555544444422 124577778877772221
Q ss_pred ----ecC-------CceeEEEEcC-CCC---EEEEEecCCeEEEEecCCCCcceeE
Q 009569 439 ----EEE-------EVITSFSLSK-DNK---YLLVNLINQEIHLWSIESDPKLVSR 479 (532)
Q Consensus 439 ----~~~-------~~i~~~~~sp-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~ 479 (532)
.|+ ....-+.+.. +|+ .++.++.+|.++++|-+++ +++..
T Consensus 430 ~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG-~~l~~ 484 (764)
T TIGR03074 430 FQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTG-EPIVP 484 (764)
T ss_pred ecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCC-CEEee
Confidence 221 1112223333 553 7889999999999999988 55544
No 432
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.29 E-value=1.3 Score=46.85 Aligned_cols=112 Identities=15% Similarity=0.157 Sum_probs=72.3
Q ss_pred CCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEee-ccCCceEEEEEe--eCCCeEEEEeCCCcEEEEECC-----
Q 009569 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE-KTGVGLISCGWF--LDGGGIFAGMTDKSICLWDLD----- 389 (532)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~--~~~~~l~~~~~dg~i~iwd~~----- 389 (532)
..+.-+.-|.-++..++-+....+.|||.+.+.....-. ...+.|.++.|. |++..+++.+..+.|.+|.--
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344455555545444444445589999998887443222 346789999987 588888888888888888541
Q ss_pred C-----CeE--EEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECC
Q 009569 390 G-----REL--ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDRE 431 (532)
Q Consensus 390 ~-----~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~ 431 (532)
. ..+ ..+......+|.+..|.++|..++.+ ++.+.|+|-.
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 1 111 12223333479999999999766554 4578888753
No 433
>PLN02153 epithiospecifier protein
Probab=95.11 E-value=2.9 Score=41.36 Aligned_cols=150 Identities=13% Similarity=0.054 Sum_probs=75.1
Q ss_pred CCCeEEEEeCC-----CcEEEEECCCCeEEEeecC-----ccCceEEEEEeeCCCEEEEEECC-----------CeEEEE
Q 009569 370 DGGGIFAGMTD-----KSICLWDLDGRELESWKGQ-----KTLRISDMAITDDGKRIISICRE-----------AAILLL 428 (532)
Q Consensus 370 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~d-----------g~I~iw 428 (532)
+++.++.|+.+ ..+.+||+.+..-...... ........+..-++++++.|+.+ ..+.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 56667777643 3578899887554433211 11122222233456666776643 257889
Q ss_pred ECCCCc-eeeeecC----Cc-eeEEEEcCCCCEEEEEecC-------------CeEEEEecCCCCcceeEEe--cc-ccc
Q 009569 429 DREANF-ERWIEEE----EV-ITSFSLSKDNKYLLVNLIN-------------QEIHLWSIESDPKLVSRYK--GH-KRA 486 (532)
Q Consensus 429 d~~~~~-~~~~~~~----~~-i~~~~~sp~~~~l~~~~~d-------------g~i~iwd~~~~~~~~~~~~--~~-~~~ 486 (532)
|..+.. ....... .. -.+++. -++++++.++.+ ..+.+||..+. +-. .+. +. ..+
T Consensus 165 d~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~-~W~-~~~~~g~~P~~ 241 (341)
T PLN02153 165 NIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASG-KWT-EVETTGAKPSA 241 (341)
T ss_pred ECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCC-cEE-eccccCCCCCC
Confidence 988776 2221111 00 112222 256666655432 45888998765 221 111 10 111
Q ss_pred eEEEEEccCCCCCcEEEEEeCC--------------CcEEEEeCCCCCceee
Q 009569 487 RFVIRSCFGGFEQAFIASGSED--------------SQVNIFLSFSPFAKKI 524 (532)
Q Consensus 487 ~~~i~~~~~s~d~~~l~sgs~d--------------g~i~iw~~~~~~~~~~ 524 (532)
.....++ ..++++++.|+.. +.|+.+|+.+.....+
T Consensus 242 r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~ 291 (341)
T PLN02153 242 RSVFAHA--VVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKL 291 (341)
T ss_pred cceeeeE--EECCEEEEECcccCCccccccccccccccEEEEEcCccEEEec
Confidence 1111111 2346777777752 2688999887765544
No 434
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=94.86 E-value=4.3 Score=39.74 Aligned_cols=106 Identities=10% Similarity=0.064 Sum_probs=56.1
Q ss_pred CCCEEEEeeCC-----CcEEEEECCCCcEE---EEeeccCCce--EEEEEeeCCCeEEEEeC-----CCcEEEEECCCCe
Q 009569 328 NDHQLLTCGQE-----EAIRRWDVNSGECL---HVYEKTGVGL--ISCGWFLDGGGIFAGMT-----DKSICLWDLDGRE 392 (532)
Q Consensus 328 ~~~~l~s~~~d-----g~i~iwd~~~~~~~---~~~~~~~~~i--~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~ 392 (532)
++..++.|+.+ ..+..+|+.+.+.. ..+..-..+. .+++. -+++.++.|+. ...+..||+.+..
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45566666654 35777787766531 1221111111 12222 25667777764 2368889987655
Q ss_pred EEEeecCc-cCceEEEEEeeCCCEEEEEECCC----eEEEEECCCCc
Q 009569 393 LESWKGQK-TLRISDMAITDDGKRIISICREA----AILLLDREANF 434 (532)
Q Consensus 393 ~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg----~I~iwd~~~~~ 434 (532)
-....... .......+...++++.+.|+.++ .+.+||..+..
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 44332211 11222333345677777777653 35688988776
No 435
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.81 E-value=1.1 Score=47.31 Aligned_cols=107 Identities=14% Similarity=0.101 Sum_probs=71.1
Q ss_pred eEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeec-CccCceEEEEEe--eCCCEEEEEECCCeEEEEECCC-----C
Q 009569 362 LISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG-QKTLRISDMAIT--DDGKRIISICREAAILLLDREA-----N 433 (532)
Q Consensus 362 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s--~~~~~l~~~~~dg~I~iwd~~~-----~ 433 (532)
+.-+.-+.-++..++-+....+.|||.++..+..... ...+.|.++.|. |+++.+++.+..+.|.+|--.. .
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 3444444445555555556689999999876544333 234489999986 5889999999999999986521 1
Q ss_pred c--------eeeeec-CCceeEEEEcCCCCEEEEEecCCeEEEEec
Q 009569 434 F--------ERWIEE-EEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (532)
Q Consensus 434 ~--------~~~~~~-~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~ 470 (532)
. .....+ ..+|.+..|.++|.+++.+ ++.+.|+|-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 1 112223 3678999999999665544 456888874
No 436
>PF06588 Muskelin_N: Muskelin N-terminus; InterPro: IPR010565 This entry represents the N-terminal region of muskelin and is found in conjunction with several IPR006652 from INTERPRO repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1 [].
Probab=94.80 E-value=0.034 Score=48.41 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHHHhcChHHHHHHHhhhcCcccCCH
Q 009569 62 KKSEFIKIITRALYSLGYDKSGALLEEESGIPMHSS 97 (532)
Q Consensus 62 ~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~~~ 97 (532)
...|.+||++.||+..||.+++.+||+.+++.++++
T Consensus 164 re~eaiRlcLKHlRq~~y~~aFesLqk~t~v~LE~p 199 (199)
T PF06588_consen 164 REKEAIRLCLKHLRQRGYLEAFESLQKQTGVQLEHP 199 (199)
T ss_pred HHHHHHHHHHHHhhhcCchhHHHHHHHHcCCCCCCC
Confidence 477899999999999999999999999999999864
No 437
>PLN02193 nitrile-specifier protein
Probab=94.65 E-value=3.7 Score=42.64 Aligned_cols=192 Identities=11% Similarity=0.007 Sum_probs=96.1
Q ss_pred CCCEEEEeeCC-------CcEEEEECCCCcEEEEeec--cCC--ceEEEEEeeCCCeEEEEeCC-----CcEEEEECCCC
Q 009569 328 NDHQLLTCGQE-------EAIRRWDVNSGECLHVYEK--TGV--GLISCGWFLDGGGIFAGMTD-----KSICLWDLDGR 391 (532)
Q Consensus 328 ~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~--~~~--~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 391 (532)
++..++.|+.+ ..+.+||+.+.+-...-.. ... ........-++..++.|+.+ +.+..||+.+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 34555666643 2477888877654321110 000 01111222356666777654 35888999876
Q ss_pred eEEEeecC---ccCceEEEEEeeCCCEEEEEECC-----CeEEEEECCCCc-eeeee------cCCceeEEEEcCCCCEE
Q 009569 392 ELESWKGQ---KTLRISDMAITDDGKRIISICRE-----AAILLLDREANF-ERWIE------EEEVITSFSLSKDNKYL 456 (532)
Q Consensus 392 ~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d-----g~I~iwd~~~~~-~~~~~------~~~~i~~~~~sp~~~~l 456 (532)
.-...... ....-...+..-++++++.|+.+ ..+..||+.+.. ..... .... .+++. -+++.+
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~-~~~~~-~~gkiy 332 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG-AGLEV-VQGKVW 332 (470)
T ss_pred EEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCC-cEEEE-ECCcEE
Confidence 55443322 11111112222355666776654 347788887766 21111 0111 11222 256777
Q ss_pred EEEecC----CeEEEEecCCCCcceeEEecc---ccceEEEEEccCCCCCcEEEEEeCC--------------CcEEEEe
Q 009569 457 LVNLIN----QEIHLWSIESDPKLVSRYKGH---KRARFVIRSCFGGFEQAFIASGSED--------------SQVNIFL 515 (532)
Q Consensus 457 ~~~~~d----g~i~iwd~~~~~~~~~~~~~~---~~~~~~i~~~~~s~d~~~l~sgs~d--------------g~i~iw~ 515 (532)
+.++.+ ..+.+||+.+. +- ..+... ..+.....++ ..++++++.|+.+ +.++++|
T Consensus 333 viGG~~g~~~~dv~~yD~~t~-~W-~~~~~~g~~P~~R~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D 408 (470)
T PLN02193 333 VVYGFNGCEVDDVHYYDPVQD-KW-TQVETFGVRPSERSVFASA--AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALD 408 (470)
T ss_pred EEECCCCCccCceEEEECCCC-EE-EEeccCCCCCCCcceeEEE--EECCEEEEECCccCCccccccCccceeccEEEEE
Confidence 777655 45899998775 22 122111 1111111111 2356777777753 2588999
Q ss_pred CCCCCceeee
Q 009569 516 SFSPFAKKIK 525 (532)
Q Consensus 516 ~~~~~~~~~~ 525 (532)
+.+.....+.
T Consensus 409 ~~t~~W~~~~ 418 (470)
T PLN02193 409 TETLQWERLD 418 (470)
T ss_pred cCcCEEEEcc
Confidence 9887665543
No 438
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.44 E-value=3.9 Score=40.66 Aligned_cols=128 Identities=10% Similarity=0.073 Sum_probs=77.4
Q ss_pred EeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEE----EEeeccCCceEEE
Q 009569 290 SSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL----HVYEKTGVGLISC 365 (532)
Q Consensus 290 ~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~i~~~ 365 (532)
+...|.+.-|.+...+.-.+...-....++|.++.||+|.+.||+--.+++|.+++....+.. ...+.....|...
T Consensus 39 avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF 118 (657)
T KOG2377|consen 39 AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGF 118 (657)
T ss_pred EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEE
Confidence 334455666766533221122222345679999999999999999999999999998433322 2223345568889
Q ss_pred EEeeCCCeEEEEeCCCcEEEEEC--CCCeEEEeecCccCceEEEEEeeCCCEEEEEE
Q 009569 366 GWFLDGGGIFAGMTDKSICLWDL--DGRELESWKGQKTLRISDMAITDDGKRIISIC 420 (532)
Q Consensus 366 ~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 420 (532)
+|..+ .-++.-+..| +-+|.. ..+.++....+. ..|.=..|+++.+.++.++
T Consensus 119 ~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~-~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 119 CWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHN-LNVNWYMYCPETAVILLST 172 (657)
T ss_pred EEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcc-cCccEEEEccccceEeeec
Confidence 99865 4455544433 455544 333333333333 3677778888877655444
No 439
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.19 E-value=2.4 Score=38.40 Aligned_cols=135 Identities=12% Similarity=0.106 Sum_probs=81.5
Q ss_pred cccEEEEEEccCCCEEEEEeC---------CCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEE-eeCCCcE
Q 009569 272 SDEVWFLQFSHDGKYLASSSK---------DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLT-CGQEEAI 341 (532)
Q Consensus 272 ~~~V~~v~~s~~g~~las~s~---------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~dg~i 341 (532)
..+.+.-..+|+|++.+-.=. .|.++.|-.. .+++.+. ..-.--+.++|+.+.+.+.. -+.+-+|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~---~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIW---NCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeee---hhccCCccccccccCcEEEEEccCceEE
Confidence 345556667899998542211 2445555443 2222222 22233357889887765554 4556788
Q ss_pred EEEE--CCCCcE-----EEEeec----cCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEe
Q 009569 342 RRWD--VNSGEC-----LHVYEK----TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAIT 410 (532)
Q Consensus 342 ~iwd--~~~~~~-----~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 410 (532)
.-|| ..+|.. +..++. .....-.++...+|++.++.-..++|...|..++++..........|++++|-
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 7788 555542 222222 11112234556688888888888999999998877666555556689999996
Q ss_pred e
Q 009569 411 D 411 (532)
Q Consensus 411 ~ 411 (532)
-
T Consensus 263 G 263 (310)
T KOG4499|consen 263 G 263 (310)
T ss_pred C
Confidence 4
No 440
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.12 E-value=1.5 Score=43.49 Aligned_cols=147 Identities=11% Similarity=0.038 Sum_probs=84.9
Q ss_pred CCCeEEEEeCCCcEEEEECCC---CeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc------eeeeec
Q 009569 370 DGGGIFAGMTDKSICLWDLDG---RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF------ERWIEE 440 (532)
Q Consensus 370 ~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~------~~~~~~ 440 (532)
|.+..+.+...|.+.-|-..+ .....+-....++|.++.|++|.+.+++--.+..|-+++....+ .+....
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k 111 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK 111 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccC
Confidence 444444444455566665543 11222222333489999999999999999999999999985443 222233
Q ss_pred CCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEe--CCCcEEEEeCCC
Q 009569 441 EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGS--EDSQVNIFLSFS 518 (532)
Q Consensus 441 ~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs--~dg~i~iw~~~~ 518 (532)
...|....|+.+ .-++.-... .+.+|.+......++..+.|.-.+.- ..| .++.+.+.-++ ..+.+.=+.+.+
T Consensus 112 ~~~IlGF~W~~s-~e~A~i~~~-G~e~y~v~pekrslRlVks~~~nvnW--y~y-c~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 112 NANILGFCWTSS-TEIAFITDQ-GIEFYQVLPEKRSLRLVKSHNLNVNW--YMY-CPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred cceeEEEEEecC-eeEEEEecC-CeEEEEEchhhhhhhhhhhcccCccE--EEE-ccccceEeeeccccccccccEEEee
Confidence 455899999976 445554433 46777665544555555666554221 223 45555433222 344444455555
Q ss_pred CCc
Q 009569 519 PFA 521 (532)
Q Consensus 519 ~~~ 521 (532)
+..
T Consensus 187 ~~v 189 (657)
T KOG2377|consen 187 GTM 189 (657)
T ss_pred cee
Confidence 433
No 441
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.12 E-value=5.4 Score=37.81 Aligned_cols=199 Identities=12% Similarity=0.098 Sum_probs=114.6
Q ss_pred eEEEEeCCCCCEEEEeeCCCcEEEEECC------CCc-EEEEeec-----cCCceEEEEEeeCCCe------------EE
Q 009569 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVN------SGE-CLHVYEK-----TGVGLISCGWFLDGGG------------IF 375 (532)
Q Consensus 320 v~~l~~s~~~~~l~s~~~dg~i~iwd~~------~~~-~~~~~~~-----~~~~i~~~~~~~~~~~------------l~ 375 (532)
-+.|+++|.+.+-++....+...+||.. ..+ .+..+.. .....+.+.|+....+ ++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4689999999888888888999999986 122 2233331 1345677777753333 56
Q ss_pred EEeCCCcEEEEECCC------CeEEEeecCccCce-EEEEEee--CCCEEEEEE-CCCeEEEEECCCCceee----ee--
Q 009569 376 AGMTDKSICLWDLDG------RELESWKGQKTLRI-SDMAITD--DGKRIISIC-REAAILLLDREANFERW----IE-- 439 (532)
Q Consensus 376 ~~~~dg~i~iwd~~~------~~~~~~~~~~~~~v-~~~~~s~--~~~~l~~~~-~dg~I~iwd~~~~~~~~----~~-- 439 (532)
.++.||+|.-|...- .....+.......| ..+++.. .+.+|+.+. ..++|.+||-.-..... ..
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 678899999998531 12222221111223 3455543 345555544 67889999865433111 00
Q ss_pred --cC------------CceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEecc--ccceEEEE---EccCCCCCc
Q 009569 440 --EE------------EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH--KRARFVIR---SCFGGFEQA 500 (532)
Q Consensus 440 --~~------------~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~i~---~~~~s~d~~ 500 (532)
.. --|+-..-.++.+.=+.|..-|.|-+||+.. .+++++... -...+-+. ..|....+.
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G--~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG--QLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC--cEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 00 0111112222333333334457899999865 577777432 12222232 355566788
Q ss_pred EEEEEeCCCcEEEEeCCCCC
Q 009569 501 FIASGSEDSQVNIFLSFSPF 520 (532)
Q Consensus 501 ~l~sgs~dg~i~iw~~~~~~ 520 (532)
+|+---.||+|..||..++.
T Consensus 263 lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred eEEeecCCceeEEecCCCCc
Confidence 88877779999999998875
No 442
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=94.09 E-value=5.7 Score=38.87 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=53.4
Q ss_pred CCCeEEEEeCC-----CcEEEEECCCCeE----EEeecCccCceEEEEEeeCCCEEEEEEC-----CCeEEEEECCCCc-
Q 009569 370 DGGGIFAGMTD-----KSICLWDLDGREL----ESWKGQKTLRISDMAITDDGKRIISICR-----EAAILLLDREANF- 434 (532)
Q Consensus 370 ~~~~l~~~~~d-----g~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~I~iwd~~~~~- 434 (532)
++..++.|+.+ ..+..||+.+... ..........-...+..-++++.+.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 56666777654 3567777765442 1111111111111122235666666664 2468889988776
Q ss_pred eeeee--cCCceeEEEEcCCCCEEEEEecCC----eEEEEecCCC
Q 009569 435 ERWIE--EEEVITSFSLSKDNKYLLVNLINQ----EIHLWSIESD 473 (532)
Q Consensus 435 ~~~~~--~~~~i~~~~~sp~~~~l~~~~~dg----~i~iwd~~~~ 473 (532)
..... ........+...++++.+.|+.++ .+.+||..+.
T Consensus 152 ~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 152 FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 22211 111222233334677777777654 3568888764
No 443
>PRK13684 Ycf48-like protein; Provisional
Probab=94.04 E-value=6.7 Score=38.60 Aligned_cols=229 Identities=10% Similarity=0.081 Sum_probs=107.4
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEEeecCC-eeEEEEE-eecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCC
Q 009569 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG-QVSLKHR-LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (532)
Q Consensus 272 ~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~-~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 349 (532)
...+.++.|..+.+-+|+|. +|. ||...+++ .+..... +......+.++.|.++ ..+++ +..+.|.. ..+.|
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~--il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~-S~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRT--LLETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLH-TTDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCE--EEEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEE-ECCCC
Confidence 45788999987666677664 443 45544333 3332211 1112334677888643 33443 44444332 12222
Q ss_pred cEEEEee---ccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEE
Q 009569 350 ECLHVYE---KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAIL 426 (532)
Q Consensus 350 ~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~ 426 (532)
+.=..+. ........+.....+..+ .++..|.|..=+=.+..-..........+.++.+.|++.++++ +..|.+.
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~-~~g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~-g~~G~i~ 196 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALGPGTAE-MATNVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAV-SSRGNFY 196 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEECCCcce-eeeccceEEEECCCCCCceeCcCCCcceEEEEEECCCCeEEEE-eCCceEE
Confidence 2211111 011112222222223333 3344454433222222222223333447899999998866655 4555554
Q ss_pred E-EECCCCc--eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEecc-c-cceEEEEEccCCCCCcE
Q 009569 427 L-LDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH-K-RARFVIRSCFGGFEQAF 501 (532)
Q Consensus 427 i-wd~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~-~~~~~i~~~~~s~d~~~ 501 (532)
. +|-.... .........++++.+.++++.++++. .|.+++=....+ ..-.....+ . .......+.+ .+++..
T Consensus 197 ~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G-~sW~~~~~~~~~~~~~l~~v~~-~~~~~~ 273 (334)
T PRK13684 197 STWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDL-ESWSKPIIPEITNGYGYLDLAY-RTPGEI 273 (334)
T ss_pred EEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCC-CccccccCCccccccceeeEEE-cCCCCE
Confidence 3 2322111 22223456789999999998877764 676643223332 221111111 0 1111233445 666665
Q ss_pred EEEEeCCCcEE
Q 009569 502 IASGSEDSQVN 512 (532)
Q Consensus 502 l~sgs~dg~i~ 512 (532)
++ ++.+|.|+
T Consensus 274 ~~-~G~~G~v~ 283 (334)
T PRK13684 274 WA-GGGNGTLL 283 (334)
T ss_pred EE-EcCCCeEE
Confidence 54 55677665
No 444
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.92 E-value=3.3 Score=43.86 Aligned_cols=180 Identities=12% Similarity=0.257 Sum_probs=94.3
Q ss_pred CCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEe----eccCCceEEEEEe
Q 009569 293 DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY----EKTGVGLISCGWF 368 (532)
Q Consensus 293 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~i~~~~~~ 368 (532)
--.|+|++.. | . .+..+.-....+..+.|+.+. .|++...+|++++|++.. +.+..+ ......|..+.+.
T Consensus 63 ~~~I~If~~s-G-~--lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f 136 (829)
T KOG2280|consen 63 RPYIRIFNIS-G-Q--LLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFF 136 (829)
T ss_pred ceeEEEEecc-c-c--chHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEe
Confidence 3457888876 2 2 222222223478899999765 556668999999999853 333221 2233446666666
Q ss_pred eCCCeEEEEeCCCcEEEE-ECCCCeEEEeecCccCceEEEEEe--eCCC---EEEEEECCCeEEEEECCCCc---eeeee
Q 009569 369 LDGGGIFAGMTDKSICLW-DLDGRELESWKGQKTLRISDMAIT--DDGK---RIISICREAAILLLDREANF---ERWIE 439 (532)
Q Consensus 369 ~~~~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~v~~~~~s--~~~~---~l~~~~~dg~I~iwd~~~~~---~~~~~ 439 (532)
.+|-.++ ..+|.+.+- +..................+-+|+ +++. .++-....-...++-..... ..+..
T Consensus 137 ~~GVavl--t~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~ 214 (829)
T KOG2280|consen 137 HNGVAVL--TVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSW 214 (829)
T ss_pred cCceEEE--ecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCC
Confidence 5553333 334544443 333323333332222122222222 2211 11111100001111112211 22223
Q ss_pred cCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEe
Q 009569 440 EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK 481 (532)
Q Consensus 440 ~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 481 (532)
....+..++.||+.++|+--...|.|.+-++... +....+.
T Consensus 215 ~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~-~~lce~~ 255 (829)
T KOG2280|consen 215 PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLS-QILCEFN 255 (829)
T ss_pred CCceEEEEEEcCCcceEEEEecCCcEEEEecchh-hhhhccC
Confidence 3466888999999999999999999999888766 5666655
No 445
>PLN02153 epithiospecifier protein
Probab=93.80 E-value=7.5 Score=38.36 Aligned_cols=187 Identities=10% Similarity=0.019 Sum_probs=90.2
Q ss_pred CCCEEEEEeCC-------CeEEEEEeecCCeeEEEEEeec-CCC---CeEEEEeCCCCCEEEEeeCC-----CcEEEEEC
Q 009569 283 DGKYLASSSKD-------QSAIIWEVKEDGQVSLKHRLSG-HRK---PVFTVSWSPNDHQLLTCGQE-----EAIRRWDV 346 (532)
Q Consensus 283 ~g~~las~s~d-------g~i~iwd~~~~~~~~~~~~~~~-h~~---~v~~l~~s~~~~~l~s~~~d-----g~i~iwd~ 346 (532)
++.+++.|+.+ ..+.+||..+. .+........ ... ....+.+ +++.++.|+.+ ..+.+||.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTH-TWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCC-EEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEEC
Confidence 45666666653 25777887653 3332221111 010 1222233 46667777653 35888998
Q ss_pred CCCcEEEE--eec---cCCceEEEEEeeCCCeEEEEeCC-----------CcEEEEECCCCeEEEeecCc---cCce-EE
Q 009569 347 NSGECLHV--YEK---TGVGLISCGWFLDGGGIFAGMTD-----------KSICLWDLDGRELESWKGQK---TLRI-SD 406 (532)
Q Consensus 347 ~~~~~~~~--~~~---~~~~i~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~---~~~v-~~ 406 (532)
.+.+-... +.. ........+..-+++.++.|+.+ ..+.+||..+..-....... .... .+
T Consensus 109 ~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~ 188 (341)
T PLN02153 109 VKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAG 188 (341)
T ss_pred CCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcce
Confidence 87654321 110 11111112223356677777643 24778898775544332211 1011 12
Q ss_pred EEEeeCCCEEEEEEC-------------CCeEEEEECCCCc-eeeeec----CCceeEEEEcCCCCEEEEEecC------
Q 009569 407 MAITDDGKRIISICR-------------EAAILLLDREANF-ERWIEE----EEVITSFSLSKDNKYLLVNLIN------ 462 (532)
Q Consensus 407 ~~~s~~~~~l~~~~~-------------dg~I~iwd~~~~~-~~~~~~----~~~i~~~~~sp~~~~l~~~~~d------ 462 (532)
++ .-++++++.++. ...+.+||..+.+ ...... .......+...++++++.|+..
T Consensus 189 ~~-~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 267 (341)
T PLN02153 189 FA-VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKG 267 (341)
T ss_pred EE-EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCcccc
Confidence 22 235666665542 1468899998877 222110 1111111222356777777742
Q ss_pred --------CeEEEEecCCC
Q 009569 463 --------QEIHLWSIESD 473 (532)
Q Consensus 463 --------g~i~iwd~~~~ 473 (532)
+.+..+|..+.
T Consensus 268 ~~~~~~~~n~v~~~d~~~~ 286 (341)
T PLN02153 268 HLGPGTLSNEGYALDTETL 286 (341)
T ss_pred ccccccccccEEEEEcCcc
Confidence 25778887654
No 446
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.74 E-value=0.055 Score=57.35 Aligned_cols=164 Identities=16% Similarity=0.153 Sum_probs=92.1
Q ss_pred cccccccEEEEEEcc-CCCEEEEEeCCCeEEEEEeec-CCeeE---EEEEeecCCCCeEEEEeCC---CCCEEEEeeCCC
Q 009569 268 LEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKE-DGQVS---LKHRLSGHRKPVFTVSWSP---NDHQLLTCGQEE 339 (532)
Q Consensus 268 l~~h~~~V~~v~~s~-~g~~las~s~dg~i~iwd~~~-~~~~~---~~~~~~~h~~~v~~l~~s~---~~~~l~s~~~dg 339 (532)
+++..+.|-.++|-. +...++ -.-|...||++.- .+.+. .+.....-...+.-+.|.| +..++..+-.++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 556777787887754 222222 2235678898762 11111 1222222334455666666 556777777788
Q ss_pred cEEEEECCCCcEEEEeeccCCceEEE-----------EEeeCCCeEEEEeCCCcEEEEECC--C----CeEEEeecCccC
Q 009569 340 AIRRWDVNSGECLHVYEKTGVGLISC-----------GWFLDGGGIFAGMTDKSICLWDLD--G----RELESWKGQKTL 402 (532)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~i~~~-----------~~~~~~~~l~~~~~dg~i~iwd~~--~----~~~~~~~~~~~~ 402 (532)
.|++.++.+... ..+..|...++.+ ..+|||+.++.++.||.++.|.+- + ..+..|..+...
T Consensus 206 ~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~ 284 (1283)
T KOG1916|consen 206 EIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKH 284 (1283)
T ss_pred ceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCC
Confidence 888877754332 3334455444433 268999999999999999998763 2 334555555543
Q ss_pred ceEEEEEeeCC-------C--EEEEEE-CCCeEEEEECCCCc
Q 009569 403 RISDMAITDDG-------K--RIISIC-REAAILLLDREANF 434 (532)
Q Consensus 403 ~v~~~~~s~~~-------~--~l~~~~-~dg~I~iwd~~~~~ 434 (532)
+-.|..|+.+. . ++++++ .+..+++|.....+
T Consensus 285 p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~ 326 (1283)
T KOG1916|consen 285 PRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQ 326 (1283)
T ss_pred CceeeeeccccccCCccceeEEEEecccCCcceeEeeccchh
Confidence 44443344332 1 223332 34557777765554
No 447
>PRK13684 Ycf48-like protein; Provisional
Probab=93.43 E-value=8.6 Score=37.85 Aligned_cols=151 Identities=10% Similarity=0.013 Sum_probs=82.0
Q ss_pred CCceEEEEEeeCCCeEEEEeCCCcEEE-EECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc--e
Q 009569 359 GVGLISCGWFLDGGGIFAGMTDKSICL-WDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--E 435 (532)
Q Consensus 359 ~~~i~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~--~ 435 (532)
...+.++.+.|++.+++++. .|.+.. +|-.+.............++++.+.++++.++++ ..|.+++=....+. .
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence 45688889998876665554 465543 2322223333333344479999999998876664 56766543333333 1
Q ss_pred eee-e---cCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEecc-ccceEEEEEccCCCCCcEEEEEeCCCc
Q 009569 436 RWI-E---EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH-KRARFVIRSCFGGFEQAFIASGSEDSQ 510 (532)
Q Consensus 436 ~~~-~---~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~s~d~~~l~sgs~dg~ 510 (532)
... . ....+..+.+.|++..++++ .+|.+.. ....+ +.-...... ..+.......| ..+++. +..+..|.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~-S~d~G-~tW~~~~~~~~~~~~~~~~~~-~~~~~~-~~~G~~G~ 324 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLV-SKDGG-KTWEKDPVGEEVPSNFYKIVF-LDPEKG-FVLGQRGV 324 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEEc-CCCeEEE-eCCCC-CCCeECCcCCCCCcceEEEEE-eCCCce-EEECCCce
Confidence 111 1 12357889999988766555 4676543 33333 222222211 11112334555 333444 44667888
Q ss_pred EEEEeC
Q 009569 511 VNIFLS 516 (532)
Q Consensus 511 i~iw~~ 516 (532)
|.-|+-
T Consensus 325 il~~~~ 330 (334)
T PRK13684 325 LLRYVG 330 (334)
T ss_pred EEEecC
Confidence 887764
No 448
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.43 E-value=6 Score=41.96 Aligned_cols=168 Identities=10% Similarity=0.088 Sum_probs=85.0
Q ss_pred cceeEEcccccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEE-EEeecCCCCeEEEEeCCCCCEEEEeeCCCc
Q 009569 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLK-HRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (532)
Q Consensus 262 ~~~~~~l~~h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~-~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 340 (532)
++++..+.-..+++-.+.|+.+.. |++...||++++|++-.. ..... ..+......|..+.+..+|-.+++ .+|.
T Consensus 73 G~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~ 148 (829)
T KOG2280|consen 73 GQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQ 148 (829)
T ss_pred ccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCceEEEe--cCCc
Confidence 444444444445788999997776 555679999999998722 21111 111223334555555556644444 3444
Q ss_pred EEEEECCCCcEEEEeec---cCCceEEEEEeeCCCe---EEEEe-CCC-cEEEEECCCCeEEEeecCccCceEEEEEeeC
Q 009569 341 IRRWDVNSGECLHVYEK---TGVGLISCGWFLDGGG---IFAGM-TDK-SICLWDLDGRELESWKGQKTLRISDMAITDD 412 (532)
Q Consensus 341 i~iwd~~~~~~~~~~~~---~~~~i~~~~~~~~~~~---l~~~~-~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 412 (532)
+.+-+-.....+..+.. ..-+..|....+++.. ++--. ..+ .+..-+........+...++ .+..+.+||+
T Consensus 149 v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~-~~~ki~VS~n 227 (829)
T KOG2280|consen 149 VILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNS-SVVKISVSPN 227 (829)
T ss_pred EEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCc-eEEEEEEcCC
Confidence 44433221112222221 1111122222222211 11100 001 11111111223333333333 7889999999
Q ss_pred CCEEEEEECCCeEEEEECCCCc
Q 009569 413 GKRIISICREAAILLLDREANF 434 (532)
Q Consensus 413 ~~~l~~~~~dg~I~iwd~~~~~ 434 (532)
.++|+.-...|.|.+.+.+..+
T Consensus 228 ~~~laLyt~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 228 RRFLALYTETGKIWVVSIDLSQ 249 (829)
T ss_pred cceEEEEecCCcEEEEecchhh
Confidence 9999999999999998887665
No 449
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.10 E-value=12 Score=41.44 Aligned_cols=174 Identities=11% Similarity=0.091 Sum_probs=102.4
Q ss_pred cEEEEECCCCcEEEEeeccC----CceEEEEEeeCCCe--EEEEe-----------CCCcEEEEEC-CCCeEEEeecCcc
Q 009569 340 AIRRWDVNSGECLHVYEKTG----VGLISCGWFLDGGG--IFAGM-----------TDKSICLWDL-DGRELESWKGQKT 401 (532)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~----~~i~~~~~~~~~~~--l~~~~-----------~dg~i~iwd~-~~~~~~~~~~~~~ 401 (532)
.|++.|..+++.+..+.... -.+..+.|+..... +++|. .+|.++.|++ +.+....+.....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 47788887777665554322 23555666653332 33332 2455777775 2233222222221
Q ss_pred CceEEEEEeeCCCEEEEEECCCeEEEEECCCCc----eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcce
Q 009569 402 LRISDMAITDDGKRIISICREAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLV 477 (532)
Q Consensus 402 ~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~ 477 (532)
-.-.-.+..|-..++++ +....+++||+..++ .........|+++.+. +..+++|.....+.++-.+.....+
T Consensus 934 ~~~~v~Ai~~f~~~~La-gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen 934 IPGPVGAICPFQGRVLA-GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred CCccceEEeccCCEEEE-ecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeE
Confidence 12223456676665555 456699999998876 1122235567777775 6788888877777766665544567
Q ss_pred eEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 478 SRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 478 ~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
..|....-+.++..+.+ -|...+|.+..=|.+.+-.+..
T Consensus 1011 ~~fadD~~pR~Vt~~~~--lD~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1011 IVFADDPVPRHVTALEL--LDYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred EEEeCCCccceeeEEEE--ecCCceeeccccCcEEEEECCC
Confidence 77777777777766665 3445677777777777766643
No 450
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.07 E-value=3.7 Score=46.46 Aligned_cols=226 Identities=12% Similarity=0.014 Sum_probs=100.7
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCC----CeEEEEeCCCCCEEEEeeCCCcEEEEECCCC
Q 009569 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK----PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (532)
Q Consensus 274 ~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~----~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 349 (532)
....++|+|...++|.++.+|.|+++-...- +.. ..|.. .+..+.|-...........+..+.+|.....
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~v---e~~---~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~ 110 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGV---EFV---GLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIK 110 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccce---EEE---eccccccchhhhheeeeecccccceeecccceeeeccccc
Confidence 3457889999999999999999999976511 111 11211 1111222111122223334445556654322
Q ss_pred cEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceE--EEEEeeCCCEEEEEECCCeEEE
Q 009569 350 ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRIS--DMAITDDGKRIISICREAAILL 427 (532)
Q Consensus 350 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~--~~~~s~~~~~l~~~~~dg~I~i 427 (532)
..+. ....+++....+--.+ +.| ..+.+++||..-.....+......... -....+..-.+..--.+-.-..
T Consensus 111 ~~~~----~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 184 (993)
T KOG1983|consen 111 TGVF----LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVL 184 (993)
T ss_pred ceee----cCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccce
Confidence 2111 1122222222222223 344 778888888764332222111110000 0000000000000000000001
Q ss_pred EECCCCceeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeC
Q 009569 428 LDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE 507 (532)
Q Consensus 428 wd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~ 507 (532)
|-+.........+..++.+..+......++. ...+.+-+|+.... .....+...... . +.++..++++..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~-------~-~~~~~~~v~~h~ 254 (993)
T KOG1983|consen 185 ISLPDAYLGLSLIEYESLQVLYYSPTKILIG-FNRGLVVIKDRASK-YVQSAYLPNGQL-------E-SRDGSHFVSYHT 254 (993)
T ss_pred eecccccccccccccccceeeeecCCCccee-eeeeeeeehhcccc-cchhhccccccc-------C-ccCCceEEEEEe
Confidence 1100000122223344445544444443333 33566666665443 222233222211 1 678899999999
Q ss_pred CCcEEEEeCCCCCc
Q 009569 508 DSQVNIFLSFSPFA 521 (532)
Q Consensus 508 dg~i~iw~~~~~~~ 521 (532)
||.+.+||...+..
T Consensus 255 Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 255 DGSYAFWDVSSGKL 268 (993)
T ss_pred cCCEEeeecCCCce
Confidence 99999999999865
No 451
>PLN02193 nitrile-specifier protein
Probab=92.94 E-value=13 Score=38.58 Aligned_cols=146 Identities=8% Similarity=-0.047 Sum_probs=75.3
Q ss_pred CCCEEEEeeCC-----CcEEEEECCCCcEEEEeec---cCCceEEEEEeeCCCeEEEEeCCC-----cEEEEECCCCeEE
Q 009569 328 NDHQLLTCGQE-----EAIRRWDVNSGECLHVYEK---TGVGLISCGWFLDGGGIFAGMTDK-----SICLWDLDGRELE 394 (532)
Q Consensus 328 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~ 394 (532)
++...+.|+.+ ..+..||+.+.+....-.. ........+..-+++.++.|+.++ .+..||+.+..-.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 45666777654 3588899887654332111 111111112223566677776543 4678888776544
Q ss_pred EeecCc---cCceEEEEEeeCCCEEEEEECC----CeEEEEECCCCc-eeeeec----CCceeEEEEcCCCCEEEEEecC
Q 009569 395 SWKGQK---TLRISDMAITDDGKRIISICRE----AAILLLDREANF-ERWIEE----EEVITSFSLSKDNKYLLVNLIN 462 (532)
Q Consensus 395 ~~~~~~---~~~v~~~~~s~~~~~l~~~~~d----g~I~iwd~~~~~-~~~~~~----~~~i~~~~~sp~~~~l~~~~~d 462 (532)
...... .......+..-+++.++.++.+ ..+.+||+.+.. ...... .......+..-++++++.|+.+
T Consensus 308 ~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~ 387 (470)
T PLN02193 308 HCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEI 387 (470)
T ss_pred eCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCcc
Confidence 332110 0011111122356777777655 458999998877 222211 1111111222356777777743
Q ss_pred --------------CeEEEEecCCC
Q 009569 463 --------------QEIHLWSIESD 473 (532)
Q Consensus 463 --------------g~i~iwd~~~~ 473 (532)
+.+.+||+.+.
T Consensus 388 ~~~~~~~~~~~~~~ndv~~~D~~t~ 412 (470)
T PLN02193 388 AMDPLAHVGPGQLTDGTFALDTETL 412 (470)
T ss_pred CCccccccCccceeccEEEEEcCcC
Confidence 24788888765
No 452
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.89 E-value=2.3 Score=42.81 Aligned_cols=143 Identities=19% Similarity=0.221 Sum_probs=86.5
Q ss_pred CCCEEE-EEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCC-------EEEEeeCCCcEEEEECCC-CcEEE
Q 009569 283 DGKYLA-SSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH-------QLLTCGQEEAIRRWDVNS-GECLH 353 (532)
Q Consensus 283 ~g~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-------~l~s~~~dg~i~iwd~~~-~~~~~ 353 (532)
+..+|. .|+.-..++-.|++-| +.+..+..|... -+.|.|+.+ .-+.|-.+..|.-.|.+- |..+.
T Consensus 478 dssli~~dg~~~~kLykmDIErG---kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERG---KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred CcceEEecCCCcccceeeecccc---eeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence 444444 3444455666666655 455666666664 567777432 223444555665566543 32222
Q ss_pred Eeecc----CCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEE
Q 009569 354 VYEKT----GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429 (532)
Q Consensus 354 ~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd 429 (532)
..+.. .....+..-. ...++++|+..|-|++||--+....+..+.-+..|..+..+.+|+++++.|.. .+.+.|
T Consensus 553 v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d 630 (776)
T COG5167 553 VVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTD 630 (776)
T ss_pred eeeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEe
Confidence 22111 1122222222 45689999999999999987665555566556689999999999998887654 677777
Q ss_pred CCC
Q 009569 430 REA 432 (532)
Q Consensus 430 ~~~ 432 (532)
++-
T Consensus 631 ~~i 633 (776)
T COG5167 631 VPI 633 (776)
T ss_pred ccc
Confidence 653
No 453
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.85 E-value=12 Score=37.78 Aligned_cols=144 Identities=14% Similarity=0.153 Sum_probs=80.1
Q ss_pred eEEEEeCCCCCEEEEeeCCCcEEEEECCCCcE--EEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCC-----e
Q 009569 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC--LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR-----E 392 (532)
Q Consensus 320 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~ 392 (532)
...+..++|+.+++.+.....++-||- |.. ...-......+.++.|.+++..++++ ..|.+..=+-.+. .
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVSKGTGLTEEDFD 317 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEecCCCCcccccc
Confidence 444566778777766554433334442 321 11222335568889999888877665 5566544332222 1
Q ss_pred EEEeecC-ccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc-eee---eecCCceeEEEEcCCCCEEEEEecCCeEEE
Q 009569 393 LESWKGQ-KTLRISDMAITDDGKRIISICREAAILLLDREANF-ERW---IEEEEVITSFSLSKDNKYLLVNLINQEIHL 467 (532)
Q Consensus 393 ~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~-~~~---~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i 467 (532)
....... ....+.++.|.+++..++ ++..|.+....-.... ... ..-......+.|.++++.+++|. +|.|.-
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~-~G~il~ 395 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN-DGVLLR 395 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeC-CcEEEE
Confidence 2221111 112588999998876554 4677777666433322 221 12235678999988777666665 777654
Q ss_pred E
Q 009569 468 W 468 (532)
Q Consensus 468 w 468 (532)
|
T Consensus 396 ~ 396 (398)
T PLN00033 396 Y 396 (398)
T ss_pred e
Confidence 4
No 454
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.71 E-value=3.2 Score=44.46 Aligned_cols=114 Identities=10% Similarity=0.048 Sum_probs=69.9
Q ss_pred ceEEEEEee--CCCEEEEEECCCeEEEEECCCCc---------------------eeeeecCCceeEEEEc--CCCCEEE
Q 009569 403 RISDMAITD--DGKRIISICREAAILLLDREANF---------------------ERWIEEEEVITSFSLS--KDNKYLL 457 (532)
Q Consensus 403 ~v~~~~~s~--~~~~l~~~~~dg~I~iwd~~~~~---------------------~~~~~~~~~i~~~~~s--p~~~~l~ 457 (532)
.|+.|.... +...|+++..||.|.+|.++.-. ..........++++++ ...++||
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence 355555543 34578889999999999763211 1112234568899998 8889999
Q ss_pred EEecCCeEEEEecCCCCcceeEEe--ccccceEEEEEccCC--CCCc-EEEEEeCCCcEEEEeC
Q 009569 458 VNLINQEIHLWSIESDPKLVSRYK--GHKRARFVIRSCFGG--FEQA-FIASGSEDSQVNIFLS 516 (532)
Q Consensus 458 ~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~i~~~~~s--~d~~-~l~sgs~dg~i~iw~~ 516 (532)
+++....|.||-..........-. .+...+..+.+.-.. ++|. .|++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 999888888887654211111111 122332233222212 2343 7888899999999888
No 455
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.62 E-value=5.1 Score=33.04 Aligned_cols=108 Identities=14% Similarity=0.155 Sum_probs=63.8
Q ss_pred EEeeCCCeEEEEeCCCcEEEEECCCC---------eEEEeecCccCceEEEEEee----C-CCEEEEEECCCeEEEEECC
Q 009569 366 GWFLDGGGIFAGMTDKSICLWDLDGR---------ELESWKGQKTLRISDMAITD----D-GKRIISICREAAILLLDRE 431 (532)
Q Consensus 366 ~~~~~~~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~s~----~-~~~l~~~~~dg~I~iwd~~ 431 (532)
.|......|++++.-|.|.|++.... .+..+.-.+ .|++++-.+ + ...|+. +....+..||+.
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~--~italaaG~l~~~~~~D~Lli-Gt~t~llaYDV~ 81 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQ--EITALAAGRLKPDDGRDCLLI-GTQTSLLAYDVE 81 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCC--ceEEEEEEecCCCCCcCEEEE-eccceEEEEEcc
Confidence 44444556777888888888886532 122222222 577776544 2 334555 455689999998
Q ss_pred CCc-eeeeecCCceeEEEEcC----CCCEEEEEecCCeEEEEecCCCCccee
Q 009569 432 ANF-ERWIEEEEVITSFSLSK----DNKYLLVNLINQEIHLWSIESDPKLVS 478 (532)
Q Consensus 432 ~~~-~~~~~~~~~i~~~~~sp----~~~~l~~~~~dg~i~iwd~~~~~~~~~ 478 (532)
... ..+..-...+.++.+-. +..++++|+ +..|.-||.... +...
T Consensus 82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~-e~fW 131 (136)
T PF14781_consen 82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGN-EIFW 131 (136)
T ss_pred cCchhhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCc-EEEE
Confidence 887 33334445677776632 344555555 667777776554 4433
No 456
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.52 E-value=0.018 Score=56.95 Aligned_cols=137 Identities=13% Similarity=0.229 Sum_probs=95.3
Q ss_pred EEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEE-EeCCCcEEEEECCCCeEEEeecC
Q 009569 321 FTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFA-GMTDKSICLWDLDGRELESWKGQ 399 (532)
Q Consensus 321 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~ 399 (532)
....|-|.+.-++.++.+..+..||-. ++...... ..+....++|..++..+++ +-..+.+++||+.+....+....
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 345788877778888888889999853 44333332 3445567888887776554 56778999999976433222222
Q ss_pred ccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc-eeeee-cCCceeEEEEcCCCCEEEEE
Q 009569 400 KTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIE-EEEVITSFSLSKDNKYLLVN 459 (532)
Q Consensus 400 ~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~-~~~~~-~~~~i~~~~~sp~~~~l~~~ 459 (532)
....-.-+.|++.+..++.+...|.+.+++..+.+ ....+ |...++++++.+.+..+..+
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD 177 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence 21122337789988899999999999999988877 44445 88889999999977555433
No 457
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.49 E-value=1 Score=41.24 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=49.1
Q ss_pred EeeCCCEEEEEECCCeEEEEECCCCceee--------e--------ecCCceeEEEEcCCCCEEEEEecCCeEEEEecCC
Q 009569 409 ITDDGKRIISICREAAILLLDREANFERW--------I--------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (532)
Q Consensus 409 ~s~~~~~l~~~~~dg~I~iwd~~~~~~~~--------~--------~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~ 472 (532)
+..++.++++.+.+|.+++||+.+.+..+ . .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 44568899999999999999999877211 1 2446788999998888776655 68899998754
Q ss_pred C
Q 009569 473 D 473 (532)
Q Consensus 473 ~ 473 (532)
.
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 3
No 458
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.47 E-value=4.5 Score=43.97 Aligned_cols=29 Identities=7% Similarity=-0.082 Sum_probs=21.8
Q ss_pred CCceEEEEEeeCCCeEEEEeCCCcEEEEEC
Q 009569 359 GVGLISCGWFLDGGGIFAGMTDKSICLWDL 388 (532)
Q Consensus 359 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 388 (532)
...|..+.++|+|.+++..+..| |.|..+
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLEL 112 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence 44688899999999999988766 444444
No 459
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.45 E-value=9.7 Score=35.87 Aligned_cols=226 Identities=13% Similarity=0.103 Sum_probs=126.2
Q ss_pred ccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeec--c
Q 009569 281 SHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEK--T 358 (532)
Q Consensus 281 s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~ 358 (532)
.-.|++...+..|.-+.+.|+.+.........+.........++.| |++-..+..|+-+.+-|+........+.. .
T Consensus 135 ~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~ 212 (370)
T COG5276 135 YVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNT 212 (370)
T ss_pred EecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEec
Confidence 3468888888766677888998766655666666566656677776 66777788999999999976543322221 2
Q ss_pred CCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeec-CccCceEEE-EEeeCCCEEEEEECCCeEEEEECCCCcee
Q 009569 359 GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG-QKTLRISDM-AITDDGKRIISICREAAILLLDREANFER 436 (532)
Q Consensus 359 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~-~~s~~~~~l~~~~~dg~I~iwd~~~~~~~ 436 (532)
...+.++..+++-.+++.. +--+.+-|..+..-....+ .....+.++ .+.-.+++...+..+.-+-+.|..+....
T Consensus 213 g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~sp 290 (370)
T COG5276 213 GPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSP 290 (370)
T ss_pred CCceEEEEecCCeeEEEEc--ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCC
Confidence 3357777766554444433 3446666776533211111 111122222 23334667777777777888888776511
Q ss_pred -eee----cCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcE
Q 009569 437 -WIE----EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQV 511 (532)
Q Consensus 437 -~~~----~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i 511 (532)
+.. ....-..+..+ +.++..+..+ ...+.|.... +......+.... ...|-.+-+.+.+.+...++-+
T Consensus 291 fl~ss~~t~g~~a~gi~ay--~~y~yiadkn-~g~vV~~s~~-s~m~~~~g~~ti---~~s~~v~~~~q~~y~~d~~~gl 363 (370)
T COG5276 291 FLSSSLDTAGYQAAGIRAY--GNYNYIADKN-TGAVVDASPP-SMMDKRPGRPTI---GQSCDVSVDTQIIYSTDYNGGL 363 (370)
T ss_pred chhccccCCCccccceEEe--cCeeEeccCC-ceEEEeCCCh-hhcccccCcceE---eeecceEEEeeEEEEeecCCCE
Confidence 111 11133344443 4555555544 4445555433 222222222111 1111113345678888889999
Q ss_pred EEEeCC
Q 009569 512 NIFLSF 517 (532)
Q Consensus 512 ~iw~~~ 517 (532)
.||+..
T Consensus 364 ~i~~~~ 369 (370)
T COG5276 364 SIIEYL 369 (370)
T ss_pred EEEEec
Confidence 999753
No 460
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=92.03 E-value=3.3 Score=44.01 Aligned_cols=90 Identities=9% Similarity=0.003 Sum_probs=51.4
Q ss_pred EEEEEeeCCCeEEEEeCCC-----cEEEEECCCCeEEEe--ecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc-
Q 009569 363 ISCGWFLDGGGIFAGMTDK-----SICLWDLDGRELESW--KGQKTLRISDMAITDDGKRIISICREAAILLLDREANF- 434 (532)
Q Consensus 363 ~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~- 434 (532)
..+.|-|+|..+++-..|| .|..+.-++-.-..+ .......+..++|+-....++. ...+.|.+|-..+..
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav-~~~n~~~lwttkNyhW 328 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAV-AEGNLLKLWTTKNYHW 328 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHH-hhcceEEEEEccceEE
Confidence 4588999999999977555 355555443111111 1111124556667655444433 456689999877765
Q ss_pred -eeeeecCCceeEEEEcCCC
Q 009569 435 -ERWIEEEEVITSFSLSKDN 453 (532)
Q Consensus 435 -~~~~~~~~~i~~~~~sp~~ 453 (532)
....-.-..+.-+.|+|..
T Consensus 329 YLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 329 YLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred EEEEeecCCCcceeeecccc
Confidence 2222233446678888854
No 461
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.75 E-value=14 Score=36.26 Aligned_cols=100 Identities=17% Similarity=0.248 Sum_probs=55.6
Q ss_pred eEEEEeCCCCCEEEEeeCCCcEEEEECCCCcE---EEEe----eccCCceEEEEEeeC---CCeEEEEeC-C--------
Q 009569 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC---LHVY----EKTGVGLISCGWFLD---GGGIFAGMT-D-------- 380 (532)
Q Consensus 320 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~----~~~~~~i~~~~~~~~---~~~l~~~~~-d-------- 380 (532)
.+.|+|.|||+.+++ ...|.|++++ ..+.. +..+ .........++++|+ ..+|++... .
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 578999999877665 6699999999 44543 2222 123456789999994 334444333 1
Q ss_pred CcEEEEECCCC--e------EEEe-ec--CccCceEEEEEeeCCCEEEEEEC
Q 009569 381 KSICLWDLDGR--E------LESW-KG--QKTLRISDMAITDDGKRIISICR 421 (532)
Q Consensus 381 g~i~iwd~~~~--~------~~~~-~~--~~~~~v~~~~~s~~~~~l~~~~~ 421 (532)
..|.-|..... . +... .. .....-..|+|.|||.+.++.+.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 23444444322 1 1111 11 12235678999999976666553
No 462
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.57 E-value=7.3 Score=39.58 Aligned_cols=92 Identities=7% Similarity=0.007 Sum_probs=55.5
Q ss_pred ceEEEEEeeCCCeEEEEeCCCcEEEEECCC-CeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCceeeee
Q 009569 361 GLISCGWFLDGGGIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIE 439 (532)
Q Consensus 361 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~~~~~~ 439 (532)
.|..+..++.|..++.++.+|.+.++=.+. +.-..+..... .|+|=.+.-+. .+++.+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~-~v~CRt~~i~~-~~ftss------------------- 163 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKS-TVNCRTTPVAE-RFFTSS------------------- 163 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCc-eEEEEeecccc-eeeccC-------------------
Confidence 467788899999999999988665543221 22222222221 34444443322 222221
Q ss_pred cCCceeEEEEcCCC---CEEEEEecCCeEEEEecCCC
Q 009569 440 EEEVITSFSLSKDN---KYLLVNLINQEIHLWSIESD 473 (532)
Q Consensus 440 ~~~~i~~~~~sp~~---~~l~~~~~dg~i~iwd~~~~ 473 (532)
..-.+..++|+|+. ..|+.-++|+.|++||+...
T Consensus 164 ~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 164 TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred CceeeeeccccCCccCCceEEEEecCcEEEEEecCCc
Confidence 11235567899975 67777788999999999876
No 463
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.33 E-value=0.73 Score=29.54 Aligned_cols=30 Identities=3% Similarity=0.090 Sum_probs=19.0
Q ss_pred ceEEEEEeeCC---CEEEEEECCCeEEEEECCC
Q 009569 403 RISDMAITDDG---KRIISICREAAILLLDREA 432 (532)
Q Consensus 403 ~v~~~~~s~~~---~~l~~~~~dg~I~iwd~~~ 432 (532)
.|.++.|+|++ .+|+.+-..+.|.++|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46677777643 3666666667777777764
No 464
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.33 E-value=18 Score=36.53 Aligned_cols=144 Identities=12% Similarity=0.045 Sum_probs=73.3
Q ss_pred EEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCce---eeee
Q 009569 363 ISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFE---RWIE 439 (532)
Q Consensus 363 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~~---~~~~ 439 (532)
..+...+++.+++++..-..++-||--...-..........+..+.+.+++..++++ ..|.+..-+-..... .+..
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S~d~G~~~~~~~f~~ 320 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVSKGTGLTEEDFDFEE 320 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEecCCCCcccccceee
Confidence 334455666666655543323333322111122222223378999999998877665 556654433222110 2221
Q ss_pred -----cCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEe---ccccceEEEEEccCCCCCcEEEEEeCCCcE
Q 009569 440 -----EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK---GHKRARFVIRSCFGGFEQAFIASGSEDSQV 511 (532)
Q Consensus 440 -----~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i 511 (532)
....+..+.|.+++..+++|. .|.+.... ..+ +.-.... .-... ..++.| .++++.++ .+.+|.|
T Consensus 321 ~~~~~~~~~l~~v~~~~d~~~~a~G~-~G~v~~s~-D~G-~tW~~~~~~~~~~~~--ly~v~f-~~~~~g~~-~G~~G~i 393 (398)
T PLN00033 321 ADIKSRGFGILDVGYRSKKEAWAAGG-SGILLRST-DGG-KSWKRDKGADNIAAN--LYSVKF-FDDKKGFV-LGNDGVL 393 (398)
T ss_pred cccCCCCcceEEEEEcCCCcEEEEEC-CCcEEEeC-CCC-cceeEccccCCCCcc--eeEEEE-cCCCceEE-EeCCcEE
Confidence 223588999998887666654 77665553 333 3322222 11222 234555 44444444 5578887
Q ss_pred EEE
Q 009569 512 NIF 514 (532)
Q Consensus 512 ~iw 514 (532)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 655
No 465
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.16 E-value=7.6 Score=32.04 Aligned_cols=108 Identities=11% Similarity=0.184 Sum_probs=65.6
Q ss_pred EEEeeCCCEEEEEECCCeEEEEECCCCc---------eeeeecCCceeEEEEcC-----CCCEEEEEecCCeEEEEecCC
Q 009569 407 MAITDDGKRIISICREAAILLLDREANF---------ERWIEEEEVITSFSLSK-----DNKYLLVNLINQEIHLWSIES 472 (532)
Q Consensus 407 ~~~s~~~~~l~~~~~dg~I~iwd~~~~~---------~~~~~~~~~i~~~~~sp-----~~~~l~~~~~dg~i~iwd~~~ 472 (532)
-.|......|++++.-|.|.|++..... ..+..-...|++++-.+ +...|+.|+ ...+..||+..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence 3455556678888999999999876432 45666777888886544 346677777 66799999988
Q ss_pred CCcceeEEeccccceEEEE-EccCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 473 DPKLVSRYKGHKRARFVIR-SCFGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 473 ~~~~~~~~~~~~~~~~~i~-~~~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
+.... ++.-...+..+. -.+......+++.| .+..|.-||...
T Consensus 83 N~d~F--yke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G 126 (136)
T PF14781_consen 83 NSDLF--YKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEG 126 (136)
T ss_pred Cchhh--hhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCC
Confidence 73332 222223333322 23323344555554 456666666554
No 466
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.04 E-value=2.8 Score=42.17 Aligned_cols=52 Identities=12% Similarity=0.157 Sum_probs=42.5
Q ss_pred EEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccCC
Q 009569 309 LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGV 360 (532)
Q Consensus 309 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 360 (532)
....+.+....+.+++.+|++++.++...-|.|.++|+.++..++.+++..+
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd 350 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD 350 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence 4455666667789999999999888887789999999999988887776543
No 467
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=90.94 E-value=2.9 Score=38.73 Aligned_cols=134 Identities=12% Similarity=0.064 Sum_probs=80.1
Q ss_pred EEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEEC-C--CeEEEEECCC---Cce-----eeeecCCceeEEEEcC
Q 009569 383 ICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR-E--AAILLLDREA---NFE-----RWIEEEEVITSFSLSK 451 (532)
Q Consensus 383 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d--g~I~iwd~~~---~~~-----~~~~~~~~i~~~~~sp 451 (532)
-.+||+.++............+.+-++.+||+++.+|+. + ..+++++... ... ........-.+...-|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 457899888777766555546666678899999998874 2 4588888655 111 1123334455666778
Q ss_pred CCCEEEEEecCC-eEEEEecCCCC-cceeE-Eec-----cccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCC
Q 009569 452 DNKYLLVNLINQ-EIHLWSIESDP-KLVSR-YKG-----HKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFSPF 520 (532)
Q Consensus 452 ~~~~l~~~~~dg-~i~iwd~~~~~-~~~~~-~~~-----~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~~~ 520 (532)
||+.|++|+... +..+|.-.... ..... +-. .....+- ..|.-|+|++++.+..++ .|||..+..
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP--~~~llPdG~lFi~an~~s--~i~d~~~n~ 200 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYP--FVHLLPDGNLFIFANRGS--IIYDYKTNT 200 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCc--eEEEcCCCCEEEEEcCCc--EEEeCCCCe
Confidence 999999998775 34555542211 11111 110 1111111 334479999998887654 456777764
No 468
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=90.65 E-value=13 Score=36.48 Aligned_cols=78 Identities=14% Similarity=0.209 Sum_probs=47.5
Q ss_pred ECCCeEEEEECCCCc-eeeeecCCceeEEEEcCCCCEEEEEec--CCeEEEEecCCCC---cceeE-EeccccceEEEEE
Q 009569 420 CREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLI--NQEIHLWSIESDP---KLVSR-YKGHKRARFVIRS 492 (532)
Q Consensus 420 ~~dg~I~iwd~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~--dg~i~iwd~~~~~---~~~~~-~~~~~~~~~~i~~ 492 (532)
..+|++.-||..+.. ..+...-.-.+.++.|||+.+++++-. ....+.|=-.... +.... +.+.... |+.
T Consensus 196 ~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDN---IR~ 272 (376)
T KOG1520|consen 196 DPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDN---IRR 272 (376)
T ss_pred CCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcc---eeE
Confidence 356888899988877 455555566788999999999888743 2233555322211 22222 5555555 333
Q ss_pred ccCCCCCcEEE
Q 009569 493 CFGGFEQAFIA 503 (532)
Q Consensus 493 ~~~s~d~~~l~ 503 (532)
+.+|.+.+
T Consensus 273 ---~~~G~fWV 280 (376)
T KOG1520|consen 273 ---DSTGHFWV 280 (376)
T ss_pred ---CCCCCEEE
Confidence 56675544
No 469
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.64 E-value=0.98 Score=28.95 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=25.7
Q ss_pred CCeEEEEeCCCC---CEEEEeeCCCcEEEEECCC
Q 009569 318 KPVFTVSWSPND---HQLLTCGQEEAIRRWDVNS 348 (532)
Q Consensus 318 ~~v~~l~~s~~~---~~l~s~~~dg~i~iwd~~~ 348 (532)
++|.++.|||++ .+|+.+-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468899999854 4888877789999999985
No 470
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.60 E-value=0.32 Score=51.91 Aligned_cols=114 Identities=9% Similarity=0.142 Sum_probs=68.8
Q ss_pred ccEEEEEEcc---CCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEE-----------eCCCCCEEEEeeCC
Q 009569 273 DEVWFLQFSH---DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVS-----------WSPNDHQLLTCGQE 338 (532)
Q Consensus 273 ~~V~~v~~s~---~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~-----------~s~~~~~l~s~~~d 338 (532)
..+.-+.|.| +.-++..+-.+++|++.+++.... ..+.+|...+..++ .||||+.+++++.|
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~d 256 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISD 256 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecC
Confidence 3344455554 667888888899999888764321 33445665555443 58999999999999
Q ss_pred CcEEEEECC-----CCcEEEEeeccC-CceEEEEEeeCCC---------eEEEEe-CCCcEEEEECCC
Q 009569 339 EAIRRWDVN-----SGECLHVYEKTG-VGLISCGWFLDGG---------GIFAGM-TDKSICLWDLDG 390 (532)
Q Consensus 339 g~i~iwd~~-----~~~~~~~~~~~~-~~i~~~~~~~~~~---------~l~~~~-~dg~i~iwd~~~ 390 (532)
|.++.|.+. .-.|.+..+.|+ .+-.|.-|+.+.. ++++++ .+..+++|....
T Consensus 257 G~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 257 GSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP 324 (1283)
T ss_pred CccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccc
Confidence 998888763 334556666665 3333332332211 233333 344677887654
No 471
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.46 E-value=12 Score=33.32 Aligned_cols=170 Identities=13% Similarity=0.212 Sum_probs=86.9
Q ss_pred CCCEEEEEeC--CCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEE-EEeeCCCcEEEEECCCCcEEEEeeccC
Q 009569 283 DGKYLASSSK--DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQL-LTCGQEEAIRRWDVNSGECLHVYEKTG 359 (532)
Q Consensus 283 ~g~~las~s~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~ 359 (532)
+|.++.+.+. ...|++||+.++... ....+. ...+..=-...-+.++ .-.-.+|.-..+|.++.+++..+.-.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~-~s~~l~--~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~- 130 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEI-FSEKLA--PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE- 130 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEE-EEeecC--CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC-
Confidence 5566666553 446999999876432 222222 1111110001112222 22245788889999988887766532
Q ss_pred CceEEEEEeeCCCeEEEEeCCCcEEEEECCC----CeE-EEeecCccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCc
Q 009569 360 VGLISCGWFLDGGGIFAGMTDKSICLWDLDG----REL-ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF 434 (532)
Q Consensus 360 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~ 434 (532)
+.=+.++. |++.++.+....+++.-|.++ ..+ ....+..-..++.+.|- +|...+-.-.+..|...|..+++
T Consensus 131 GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGr 207 (262)
T COG3823 131 GEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGR 207 (262)
T ss_pred Ccceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCc
Confidence 22344443 566666665556666666543 122 12222222233444443 45555544455555555665555
Q ss_pred -eeee-------------ecCCceeEEEEcCCC-CEEEEE
Q 009569 435 -ERWI-------------EEEEVITSFSLSKDN-KYLLVN 459 (532)
Q Consensus 435 -~~~~-------------~~~~~i~~~~~sp~~-~~l~~~ 459 (532)
...+ .+....+.+++.|++ +++++|
T Consensus 208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 1111 234567889999987 444444
No 472
>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes. This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.
Probab=89.63 E-value=0.68 Score=34.47 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhcChHHHHHHHhhhcCcccC
Q 009569 65 EFIKIITRALYSLGYDKSGALLEEESGIPMH 95 (532)
Q Consensus 65 e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~ 95 (532)
=++-||..||+-+||+.|+.+|+.|||.+-.
T Consensus 20 Li~eLIrEyLef~~l~~TlsVf~~Es~~~~~ 50 (81)
T PF09398_consen 20 LINELIREYLEFNNLDYTLSVFQPESGQPEE 50 (81)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHT-TT-
T ss_pred HHHHHHHHHHHHcCCccHHHHHhhccCCCCC
Confidence 4688999999999999999999999998754
No 473
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=89.57 E-value=24 Score=35.32 Aligned_cols=96 Identities=10% Similarity=0.137 Sum_probs=42.7
Q ss_pred CCCEEEEEe-CCCeEEEEEeec-CCeeEEEEEeecC-CCCeEEEEeCCCCCEEEEeeCC-----------CcEEEEECCC
Q 009569 283 DGKYLASSS-KDQSAIIWEVKE-DGQVSLKHRLSGH-RKPVFTVSWSPNDHQLLTCGQE-----------EAIRRWDVNS 348 (532)
Q Consensus 283 ~g~~las~s-~dg~i~iwd~~~-~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~~~d-----------g~i~iwd~~~ 348 (532)
+++..+.|+ .+..+.++|+.. .+.+..+..+... ......+. -++...+.|+.+ ..+..||..+
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~--~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~ 115 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAF--IDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKT 115 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEE--ECCEEEEEcCCCCCCCCCceeEcccEEEEeCCC
Confidence 444444443 344566677653 1233322222211 11112222 256666666653 2477888877
Q ss_pred CcEEEEeeccCCce--EEEEEeeCCCeEEEEeCC
Q 009569 349 GECLHVYEKTGVGL--ISCGWFLDGGGIFAGMTD 380 (532)
Q Consensus 349 ~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~d 380 (532)
.+....-....... .+....-+++.++.|+.+
T Consensus 116 n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 116 NSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 65433211111111 111221467777777754
No 474
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.14 E-value=3.5 Score=37.78 Aligned_cols=67 Identities=12% Similarity=0.205 Sum_probs=48.5
Q ss_pred EeeCCCeEEEEeCCCcEEEEECCCCeEEEee-------c-------CccCceEEEEEeeCCCEEEEEECCCeEEEEECCC
Q 009569 367 WFLDGGGIFAGMTDKSICLWDLDGRELESWK-------G-------QKTLRISDMAITDDGKRIISICREAAILLLDREA 432 (532)
Q Consensus 367 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~-------~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~ 432 (532)
+..++.++++-+.+|.+++||+.+++..... . .....|..+.++.+|.-+++- .+|..+.||..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEecccc
Confidence 4457889999999999999999875432111 1 233478888999888777665 457889998766
Q ss_pred Cc
Q 009569 433 NF 434 (532)
Q Consensus 433 ~~ 434 (532)
..
T Consensus 97 ~~ 98 (219)
T PF07569_consen 97 GC 98 (219)
T ss_pred ce
Confidence 55
No 475
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.03 E-value=26 Score=34.97 Aligned_cols=195 Identities=12% Similarity=0.116 Sum_probs=96.5
Q ss_pred CCCEEEEEeCCCeEEEEEeecCCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEEeeccC-Cc
Q 009569 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTG-VG 361 (532)
Q Consensus 283 ~g~~las~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~ 361 (532)
+|+ +..+..+|.|.-.|..++... -...+......+..-.+..+|+ ++.++.++.+..+|.++|+.+..+.... ..
T Consensus 68 dg~-v~~~~~~G~i~A~d~~~g~~~-W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~ 144 (370)
T COG1520 68 DGT-VYVGTRDGNIFALNPDTGLVK-WSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPY 144 (370)
T ss_pred CCe-EEEecCCCcEEEEeCCCCcEE-ecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeE
Confidence 443 444467777777777765321 0000110011122222222565 7778888999999999999888877655 11
Q ss_pred eEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCc---cCceEEEEEeeCCCEEEEEEC--CCeEEEEECCCCcee
Q 009569 362 LISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK---TLRISDMAITDDGKRIISICR--EAAILLLDREANFER 436 (532)
Q Consensus 362 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~--dg~I~iwd~~~~~~~ 436 (532)
+.......+ ..++.++.++.+.-.|..++...-..... ...+..-....++ .++.+.. ++.+.-.|..++...
T Consensus 145 ~~~~~v~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 145 YASPPVVGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred EecCcEEcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEe
Confidence 222222223 34444446788888887765543222111 1011111112223 4444444 566777777776622
Q ss_pred eee---cCCcee---EEEEcC-----CCCEEEEEecCCeEEEEecCCCCcceeEEecc
Q 009569 437 WIE---EEEVIT---SFSLSK-----DNKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483 (532)
Q Consensus 437 ~~~---~~~~i~---~~~~sp-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 483 (532)
... +...-+ ...... .+.-++.++.++.+...|..++ +.+-.+...
T Consensus 223 w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G-~~~W~~~~~ 279 (370)
T COG1520 223 WSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTG-ELIWSFPAG 279 (370)
T ss_pred eeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCC-ceEEEEecc
Confidence 211 111100 010111 1122355666777888888877 666666553
No 476
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.97 E-value=10 Score=38.54 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=21.4
Q ss_pred CeEEEEeCCCCCEEEEeeCCCcEEEEE
Q 009569 319 PVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (532)
Q Consensus 319 ~v~~l~~s~~~~~l~s~~~dg~i~iwd 345 (532)
.|..+..++.|..++-.+.+|.+.++=
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEc
Confidence 467788899999999989888766554
No 477
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=88.82 E-value=26 Score=34.60 Aligned_cols=53 Identities=19% Similarity=0.424 Sum_probs=27.1
Q ss_pred CCCEEEEeeCC-----------CcEEEEECCCCcEEEEeeccCCceEE-EEE-eeCCCeEEEEeCC
Q 009569 328 NDHQLLTCGQE-----------EAIRRWDVNSGECLHVYEKTGVGLIS-CGW-FLDGGGIFAGMTD 380 (532)
Q Consensus 328 ~~~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~i~~-~~~-~~~~~~l~~~~~d 380 (532)
+++..+.|+.+ ..+..||..+.+-...-......... ... .-+++..+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 56666777653 24778888776543321111111111 111 2467777877754
No 478
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.77 E-value=18 Score=32.66 Aligned_cols=136 Identities=9% Similarity=0.116 Sum_probs=75.7
Q ss_pred CEEEEeeCCCcEEEEECCCC--cEEEEeeccCCceEEEEEeeCCCeEEEEeCCC------cEEEE---ECC---CCeEE-
Q 009569 330 HQLLTCGQEEAIRRWDVNSG--ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDK------SICLW---DLD---GRELE- 394 (532)
Q Consensus 330 ~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~iw---d~~---~~~~~- 394 (532)
+.|+.+...+.|.+|++.+. +....|.. -+.|..+.++..|+++++--.+. .+++| ... +..+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 34444466778999999833 34555554 36788999999999999853221 45553 221 11111
Q ss_pred Eeec--------------------CccCceEEEEEeeCCCEEEEEECCCeEEEEECCCCce-----eeee---------c
Q 009569 395 SWKG--------------------QKTLRISDMAITDDGKRIISICREAAILLLDREANFE-----RWIE---------E 440 (532)
Q Consensus 395 ~~~~--------------------~~~~~v~~~~~s~~~~~l~~~~~dg~I~iwd~~~~~~-----~~~~---------~ 440 (532)
...+ .-...+.+++..|-...|+.|+ ++.+.+|.+..... .+.. .
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 1111 1122567788777544455544 45788887654331 1111 1
Q ss_pred CCceeEEEEcCCCCEEEEEecCCeEEEEec
Q 009569 441 EEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (532)
Q Consensus 441 ~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~ 470 (532)
.-.+..+++. +.|+|..+ +-.++++.+
T Consensus 187 ~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 187 NFKPTQVAIC--EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred CceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence 2224455554 56777766 555666554
No 479
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.74 E-value=6.2 Score=44.57 Aligned_cols=137 Identities=13% Similarity=0.236 Sum_probs=84.9
Q ss_pred eCCCcEEEEECCCCcEEEEeeccCCceEEEEE--------eeCCCeEEEEeCCCcEEEEECC----CCeEEEee-----c
Q 009569 336 GQEEAIRRWDVNSGECLHVYEKTGVGLISCGW--------FLDGGGIFAGMTDKSICLWDLD----GRELESWK-----G 398 (532)
Q Consensus 336 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~-----~ 398 (532)
+.|..+.+|+.+++.....+.+-...|..+.. .|.=+++++-..--.|.++-+. +.....+. .
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 46789999999997777777766666666553 2222334443444556665442 11111111 1
Q ss_pred CccCceEEEEEeeCCCEEEEEECCCeEEEE--ECCCCc----------------------eeee-ecCCceeEEEEcCCC
Q 009569 399 QKTLRISDMAITDDGKRIISICREAAILLL--DREANF----------------------ERWI-EEEEVITSFSLSKDN 453 (532)
Q Consensus 399 ~~~~~v~~~~~s~~~~~l~~~~~dg~I~iw--d~~~~~----------------------~~~~-~~~~~i~~~~~sp~~ 453 (532)
.....|++++...+|+.+++| .||.|+-. ....+- ..+. .+..+|..++.....
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 223378999988888776665 55544322 111110 0111 346689999999888
Q ss_pred CEEEEEecCCeEEEEecCCC
Q 009569 454 KYLLVNLINQEIHLWSIESD 473 (532)
Q Consensus 454 ~~l~~~~~dg~i~iwd~~~~ 473 (532)
..+.+-+..|+|.+||+...
T Consensus 255 ~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred ceeeeeccCceEEEEEccCC
Confidence 99999999999999999763
No 480
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=88.69 E-value=44 Score=37.14 Aligned_cols=244 Identities=13% Similarity=0.074 Sum_probs=0.0
Q ss_pred Ecc-CCCEEEEEeCCCeEEEEEeec----CCeeEEEEEeecCCCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEEEE
Q 009569 280 FSH-DGKYLASSSKDQSAIIWEVKE----DGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV 354 (532)
Q Consensus 280 ~s~-~g~~las~s~dg~i~iwd~~~----~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 354 (532)
|.| .+.+|++| .+-++.. ......+....|..+.+..++.-.....-.....+..+.+--+.......-
T Consensus 1 ~DP~~~~Lla~g------~i~~~~~~r~~~~~~~i~A~asGesg~~L~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w 74 (765)
T PF10214_consen 1 YDPTVGSLLAIG------EIQDVSDLRSGSRPVPILAFASGESGSVLRLSRLDEEEWSWGNNDDASLRVPTIDPELSGAW 74 (765)
T ss_pred CCCCcCccEEEE------EeeecccCCCCCceeEEEEEecCCCCCeeEEEEecccccccccccccccccCCCCcccccee
Q ss_pred eeccCCceEEEEEe------eCCCeEEEEeCCCcEEEEE----------------CCCCeEEEeecCccC--ceEEEEEe
Q 009569 355 YEKTGVGLISCGWF------LDGGGIFAGMTDKSICLWD----------------LDGRELESWKGQKTL--RISDMAIT 410 (532)
Q Consensus 355 ~~~~~~~i~~~~~~------~~~~~l~~~~~dg~i~iwd----------------~~~~~~~~~~~~~~~--~v~~~~~s 410 (532)
.-....+|..++|. ......+..-....+.|+. +.-..+..+.....+ +..+++|+
T Consensus 75 ~i~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~Fn 154 (765)
T PF10214_consen 75 SIDDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFN 154 (765)
T ss_pred EcCCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEec
Q ss_pred e-CCCEEEEEECCCeEEEEECCCCc-------eeeeecCCce------e----EEEEcCCCCEEEEEecCCeEEEEecCC
Q 009569 411 D-DGKRIISICREAAILLLDREANF-------ERWIEEEEVI------T----SFSLSKDNKYLLVNLINQEIHLWSIES 472 (532)
Q Consensus 411 ~-~~~~l~~~~~dg~I~iwd~~~~~-------~~~~~~~~~i------~----~~~~sp~~~~l~~~~~dg~i~iwd~~~ 472 (532)
| +...||+....|...|||+.... .......+.+ . .+.|.++...|++++ ...+.++|+.+
T Consensus 155 P~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~~~d~~~ 233 (765)
T PF10214_consen 155 PWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLMLIDFES 233 (765)
T ss_pred cCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceEEEECCC
Q ss_pred CCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCcEEEEeCCC---CCceeeeccccCCC
Q 009569 473 DPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVNIFLSFS---PFAKKIKYTSMKGA 532 (532)
Q Consensus 473 ~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~i~iw~~~~---~~~~~~~~~~~~~a 532 (532)
. .....+........++.+.- +++..-.+..=....|...++.+ +....+.+.-...+
T Consensus 234 ~-~~~~~l~~~~~~~~IlDv~~-~~~~~~~~FiLTs~eiiw~~~~~~~~~~~~llSwkH~~d~ 294 (765)
T PF10214_consen 234 N-WQTEYLVTAKTWSWILDVKR-SPDNPSHVFILTSKEIIWLDVKSSSEKLTRLLSWKHFRDP 294 (765)
T ss_pred C-CccchhccCCChhheeeEEe-cCCccceEEEEecCeEEEEEccCCCCCeeeeeecccccCC
No 481
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=88.43 E-value=4.5 Score=30.91 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=30.8
Q ss_pred ECCCeEEEEECCCCc-eeeeecCCceeEEEEcCCCCEEEEEe
Q 009569 420 CREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNL 460 (532)
Q Consensus 420 ~~dg~I~iwd~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~ 460 (532)
..+|.+..||..+++ ..+...-.-.+.+++++|+.+++++-
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence 345889999999998 55666666789999999999888764
No 482
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=88.35 E-value=31 Score=34.96 Aligned_cols=273 Identities=10% Similarity=0.092 Sum_probs=146.4
Q ss_pred ccccccCCCCCceeeccCCccCCCCCcceeEEcccccccEEEEEEcc-----CCCEEEEEeCCCeEEEEEeecC------
Q 009569 236 SCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSH-----DGKYLASSSKDQSAIIWEVKED------ 304 (532)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s~-----~g~~las~s~dg~i~iwd~~~~------ 304 (532)
..++.++..+.+++|....... -+...+-.. .-..+|..+..-+ +...||. =.-..+.||.+...
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~--~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEF--QPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred cEEEEeccccEEEEEccCCCCC--CCccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 4556677788888887733221 111222111 2346777776532 2234444 34567888887421
Q ss_pred -CeeEEEEEeecCC--CCeEEEEeCC----C-CCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEE
Q 009569 305 -GQVSLKHRLSGHR--KPVFTVSWSP----N-DHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFA 376 (532)
Q Consensus 305 -~~~~~~~~~~~h~--~~v~~l~~s~----~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 376 (532)
....... ...|. .....+++-| . ..+|..-+.||.+.+++-+.....+.+.. ---...+++.+..+.|++
T Consensus 114 g~~~~L~~-~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt 191 (418)
T PF14727_consen 114 GNQYQLEL-IYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVT 191 (418)
T ss_pred CcEEEEEE-EEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEE
Confidence 1222222 22222 2223333322 2 36788889999999999766544444433 222345678888889999
Q ss_pred EeCCCcEEEEECCC-----C-e----------------EEEeecCccCceEEEEEee---CCCEEEEEECCCeEEEEECC
Q 009569 377 GMTDKSICLWDLDG-----R-E----------------LESWKGQKTLRISDMAITD---DGKRIISICREAAILLLDRE 431 (532)
Q Consensus 377 ~~~dg~i~iwd~~~-----~-~----------------~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~I~iwd~~ 431 (532)
++.+..+.-|.... . . ...|.-.-+..+.++..-. ....+++- ....+.+.+..
T Consensus 192 ~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvL-ger~Lf~l~~~ 270 (418)
T PF14727_consen 192 ASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVL-GERSLFCLKDN 270 (418)
T ss_pred ecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEE-ecceEEEEcCC
Confidence 99888888886521 0 0 0111111111333443332 22233332 23456666654
Q ss_pred CCceeeeecCCceeEEE-E------cCC-CCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEE
Q 009569 432 ANFERWIEEEEVITSFS-L------SKD-NKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIA 503 (532)
Q Consensus 432 ~~~~~~~~~~~~i~~~~-~------sp~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~ 503 (532)
..-......+....|++ + .|+ +..+++++.++.+.||. .. +++..-+....++.+..+.| ..-...|+
T Consensus 271 G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~-~L~WsA~l~~~PVal~v~~~-~~~~G~IV 346 (418)
T PF14727_consen 271 GSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DT-TLVWSAQLPHVPVALSVANF-NGLKGLIV 346 (418)
T ss_pred CeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CC-eEEEecCCCCCCEEEEeccc-CCCCceEE
Confidence 32222222333333332 1 122 12588888899999986 22 45555555556665554555 44456888
Q ss_pred EEeCCCcEEEEeCCCC
Q 009569 504 SGSEDSQVNIFLSFSP 519 (532)
Q Consensus 504 sgs~dg~i~iw~~~~~ 519 (532)
+-+.+|.+.+-=+.|.
T Consensus 347 ~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 347 SLSDEGQLSVSYLGTD 362 (418)
T ss_pred EEcCCCcEEEEEeCCC
Confidence 8999999998877764
No 483
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.18 E-value=2.6 Score=44.73 Aligned_cols=74 Identities=18% Similarity=0.307 Sum_probs=45.8
Q ss_pred cCCCEEEEEeCCCeEEEEEeec----CCeeEEEEEeec--------------------CCCCeEEEEeCC----CCCEEE
Q 009569 282 HDGKYLASSSKDQSAIIWEVKE----DGQVSLKHRLSG--------------------HRKPVFTVSWSP----NDHQLL 333 (532)
Q Consensus 282 ~~g~~las~s~dg~i~iwd~~~----~~~~~~~~~~~~--------------------h~~~v~~l~~s~----~~~~l~ 333 (532)
++...++.+..||.+....... +..+.. ..+.. ....+..+++++ +..+++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSE-ELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLF 234 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE-----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEE-EEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEE
Confidence 4666788888899888887764 111111 11111 123455666666 678999
Q ss_pred EeeCCCcEEEEECCCCcEEEEee
Q 009569 334 TCGQEEAIRRWDVNSGECLHVYE 356 (532)
Q Consensus 334 s~~~dg~i~iwd~~~~~~~~~~~ 356 (532)
+.+.|+++++||+.+++++....
T Consensus 235 tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EEETTSEEEEEETTTTCEEEEEE
T ss_pred EEeCCCeEEEEECCCCeEEEEec
Confidence 99999999999999999976653
No 484
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=88.04 E-value=22 Score=36.98 Aligned_cols=179 Identities=13% Similarity=0.048 Sum_probs=81.7
Q ss_pred CCCcEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCcc--CceEEEEEeeCCC
Q 009569 337 QEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKT--LRISDMAITDDGK 414 (532)
Q Consensus 337 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~~~ 414 (532)
..+...+.|. .|.....+.........+...++|.+++... +.++.+|+-++.+........ ..-.++...|+|+
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn 202 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGN 202 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCEEEeeecCCcccccccccEECCCCC
Confidence 3456777775 4555555543322222256677887776554 789999998876555443321 1235677889999
Q ss_pred EEEEEEC-------------CCeEEEEECCCCceee------------e------------ecC-----CceeEEEEcC-
Q 009569 415 RIISICR-------------EAAILLLDREANFERW------------I------------EEE-----EVITSFSLSK- 451 (532)
Q Consensus 415 ~l~~~~~-------------dg~I~iwd~~~~~~~~------------~------------~~~-----~~i~~~~~sp- 451 (532)
+|+.+.. ...|..+| .+++... . ... .-++++.+.+
T Consensus 203 ~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~ 281 (477)
T PF05935_consen 203 LLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS 281 (477)
T ss_dssp EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT
T ss_pred EEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC
Confidence 8887772 12244444 3333000 0 000 2378999999
Q ss_pred CCCEEEEEecCCeEEEEecCCCCcceeEEeccccc-----eEEEEE-------------ccCCCCCcEEEEEeCCC---c
Q 009569 452 DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRA-----RFVIRS-------------CFGGFEQAFIASGSEDS---Q 510 (532)
Q Consensus 452 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~i~~-------------~~~s~d~~~l~sgs~dg---~ 510 (532)
++.+++++-.-..|...|.+++ +....+-.+... ...+.. .|.-+-|+.-+.--.+| .
T Consensus 282 dd~iivSsR~~s~V~~Id~~t~-~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH~~~~~~~g~~~~ 360 (477)
T PF05935_consen 282 DDSIIVSSRHQSAVIKIDYRTG-KIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQHTAHLIPDGPQGN 360 (477)
T ss_dssp TTEEEEEETTT-EEEEEE-TTS--EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-EEEEE-TTS---S
T ss_pred CCeEEEEcCcceEEEEEECCCC-cEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcccccccceEEcCCCCeEE
Confidence 4455555544557888887776 555555433210 000111 11112345555566677 8
Q ss_pred EEEEeCCCCC
Q 009569 511 VNIFLSFSPF 520 (532)
Q Consensus 511 i~iw~~~~~~ 520 (532)
|.+||=..+.
T Consensus 361 l~vFDNg~~r 370 (477)
T PF05935_consen 361 LLVFDNGNGR 370 (477)
T ss_dssp EEEEE--TTG
T ss_pred EEEEECCCCC
Confidence 8888876543
No 485
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.02 E-value=34 Score=35.06 Aligned_cols=104 Identities=16% Similarity=0.232 Sum_probs=60.2
Q ss_pred CCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcE--EEEe----e-ccCCceEEEEEeeCC------CeEEEEe------
Q 009569 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC--LHVY----E-KTGVGLISCGWFLDG------GGIFAGM------ 378 (532)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~----~-~~~~~i~~~~~~~~~------~~l~~~~------ 378 (532)
...+.|+|.||++.|++--..|.|++++-.++.. +..+ . ........++++|+- .+|++..
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~ 109 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD 109 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence 4567899999998777755469999998655432 1111 1 135678899999874 3444442
Q ss_pred ----CCCcEEEEECCC--------CeEEEee-cCccCceEEEEEeeCCCEEEEEEC
Q 009569 379 ----TDKSICLWDLDG--------RELESWK-GQKTLRISDMAITDDGKRIISICR 421 (532)
Q Consensus 379 ----~dg~i~iwd~~~--------~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~ 421 (532)
....|.-|.+.. ..+..-. ......-..|+|.|||.++++.+.
T Consensus 110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence 123454455431 1111111 111123567889999987665544
No 486
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=87.70 E-value=12 Score=40.04 Aligned_cols=69 Identities=12% Similarity=0.194 Sum_probs=44.1
Q ss_pred eEEEEEeeCCCEEEEEECCCe-----EEEEECCCCc----eeeeecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 009569 404 ISDMAITDDGKRIISICREAA-----ILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (532)
Q Consensus 404 v~~~~~s~~~~~l~~~~~dg~-----I~iwd~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~ 473 (532)
-..+.|-|.|..+++-..||. |.++...... ....+.+..+...+|+-....++++. .+.+.+|-..+.
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~-~n~~~lwttkNy 326 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE-GNLLKLWTTKNY 326 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhh-cceEEEEEccce
Confidence 345889999999999876653 5555544332 12234455567777876655555443 667999987654
No 487
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=87.52 E-value=44 Score=35.76 Aligned_cols=153 Identities=12% Similarity=0.098 Sum_probs=82.4
Q ss_pred CCceEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEE---EeecCccCc-eEEEEEee------CCCEEEEEEC-C---Ce
Q 009569 359 GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELE---SWKGQKTLR-ISDMAITD------DGKRIISICR-E---AA 424 (532)
Q Consensus 359 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~-v~~~~~s~------~~~~l~~~~~-d---g~ 424 (532)
...+..+.+.++++.+++...+|.|.+||....... .....+... +++ .|-+ ...++++.+. + -.
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcEE
Confidence 667889999999999999999999999999322211 111111111 111 2222 1334544443 2 24
Q ss_pred EEEEEC--CCCc-eee---eecCCceeEEEEcC-CCCEEEEEecCCeEEEEecCCCCcceeEEecc---ccc-eEEEEEc
Q 009569 425 ILLLDR--EANF-ERW---IEEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIESDPKLVSRYKGH---KRA-RFVIRSC 493 (532)
Q Consensus 425 I~iwd~--~~~~-~~~---~~~~~~i~~~~~sp-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~-~~~i~~~ 493 (532)
.+++.+ .+.. ... ..+........|+. +|++..- .++.|.+|++... +..+++.-. ... ...+...
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f-~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNF-QIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCc-eEEEEEEechhhccccccceEee
Confidence 667777 2222 111 12222233333333 4443333 5789999999887 666665433 110 1223333
Q ss_pred cCCCCCcEEEEEeCCCcEEEEeCCC
Q 009569 494 FGGFEQAFIASGSEDSQVNIFLSFS 518 (532)
Q Consensus 494 ~~s~d~~~l~sgs~dg~i~iw~~~~ 518 (532)
.|..+.++- +.+++|++.|+.-
T Consensus 285 --~~s~nRvLL-s~~nkIyLld~~~ 306 (670)
T PF10395_consen 285 --PPSPNRVLL-SVNNKIYLLDLKF 306 (670)
T ss_pred --cCCCCeEEE-EcCCEEEEEeehh
Confidence 344444443 3578899999863
No 488
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.40 E-value=0.097 Score=51.95 Aligned_cols=142 Identities=15% Similarity=0.224 Sum_probs=94.1
Q ss_pred eEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEE-EEECCCeEEEEECCCCc-eee-e
Q 009569 362 LISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRII-SICREAAILLLDREANF-ERW-I 438 (532)
Q Consensus 362 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~I~iwd~~~~~-~~~-~ 438 (532)
.....|-|.+.-++.++.+..+..||-.+........ .+...+++|+.++..++ .+-..+.+.+||+.+.. ..+ .
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~--tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNP--TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcceecccCC--chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence 3456788877779999999999999977655443332 23677888988877554 45578899999998765 222 2
Q ss_pred ecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCCCcceeEEeccccceEEEEEccCCCCCcEEEEEeCCCc
Q 009569 439 EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQ 510 (532)
Q Consensus 439 ~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~sgs~dg~ 510 (532)
+....-.-+.|++.+..++.|...|.+.|++..+. +.+...-.|...+ +..++ .+.+ +.+.++.|..
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgts-R~iiv~Gkh~RRg--tq~av-~lEd-~vil~dcd~~ 181 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTS-RRIIVMGKHQRRG--TQIAV-TLED-YVILCDCDNT 181 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccch-hhhhhhcccccce--eEEEe-cccc-eeeecCcHHH
Confidence 22222233789999999999999999999998776 4443333355543 33444 4444 4444554443
No 489
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.18 E-value=31 Score=33.75 Aligned_cols=146 Identities=18% Similarity=0.282 Sum_probs=82.7
Q ss_pred cccEEEEEEccCCCEEEEEeCCCe------EEEEEeecC----CeeEEE--EEeecCCC--------CeEEEEeCCCCCE
Q 009569 272 SDEVWFLQFSHDGKYLASSSKDQS------AIIWEVKED----GQVSLK--HRLSGHRK--------PVFTVSWSPNDHQ 331 (532)
Q Consensus 272 ~~~V~~v~~s~~g~~las~s~dg~------i~iwd~~~~----~~~~~~--~~~~~h~~--------~v~~l~~s~~~~~ 331 (532)
-+.+..+.+.+++..+++.+.+|. +..+++... ..+... ..+....+ ..-+|++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 356788899865555666666666 555555431 111111 11222222 2337788778888
Q ss_pred EEEeeCC------CcEEEEECCCCcEEEEee---------------ccCCceEEEEEeeCCCeEEEEeC-----CC--c-
Q 009569 332 LLTCGQE------EAIRRWDVNSGECLHVYE---------------KTGVGLISCGWFLDGGGIFAGMT-----DK--S- 382 (532)
Q Consensus 332 l~s~~~d------g~i~iwd~~~~~~~~~~~---------------~~~~~i~~~~~~~~~~~l~~~~~-----dg--~- 382 (532)
+++.-.+ ..|..++.. |+....+. ..+..+-+++++|+|+.|+++.. |+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 8876666 778888866 65544331 13456789999999997766543 22 1
Q ss_pred ------EEE--EECCC-C-eEE--EeecC------ccCceEEEEEeeCCCEEEE
Q 009569 383 ------ICL--WDLDG-R-ELE--SWKGQ------KTLRISDMAITDDGKRIIS 418 (532)
Q Consensus 383 ------i~i--wd~~~-~-~~~--~~~~~------~~~~v~~~~~s~~~~~l~~ 418 (532)
+++ ||..+ + ... .+... ....|..+.+.+++++++.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 344 44433 1 111 11111 2346888888888875554
No 490
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=86.86 E-value=13 Score=35.39 Aligned_cols=95 Identities=9% Similarity=0.153 Sum_probs=62.3
Q ss_pred cEEEEECCCCcEEEEeeccCCceEEEEEeeCCCeEEEEe------CCCcEEEEECCCCeEEEeecCc----cCceEEEEE
Q 009569 340 AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGM------TDKSICLWDLDGRELESWKGQK----TLRISDMAI 409 (532)
Q Consensus 340 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~ 409 (532)
.|++||..+.+....-..-.+.|+++.|..+.+.++.|. ....+..||..+.....+.... .++|..+.+
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~ 96 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTF 96 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEe
Confidence 599999988776655555678899999996666666654 3456889999887765555522 247877777
Q ss_pred ee-CCC-EEEEEE-C--CCeEEEEECCCCc
Q 009569 410 TD-DGK-RIISIC-R--EAAILLLDREANF 434 (532)
Q Consensus 410 s~-~~~-~l~~~~-~--dg~I~iwd~~~~~ 434 (532)
.. |+. ..+.|. . +..|..||-.+..
T Consensus 97 ~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~ 126 (281)
T PF12768_consen 97 ISNDGSNFWVAGRSANGSTFLMKYDGSSWS 126 (281)
T ss_pred eccCCceEEEeceecCCCceEEEEcCCceE
Confidence 43 333 333333 2 3347777655544
No 491
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=86.56 E-value=36 Score=33.85 Aligned_cols=188 Identities=13% Similarity=0.134 Sum_probs=107.4
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEEEEeeccCCceEEEEEe----eCCCe--EEEEe-CC---CcEEEEECC--CCeEEE
Q 009569 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWF----LDGGG--IFAGM-TD---KSICLWDLD--GRELES 395 (532)
Q Consensus 328 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~----~~~~~--l~~~~-~d---g~i~iwd~~--~~~~~~ 395 (532)
...+++....++-+.+||+. |+.++.+. .+.+..+..- -+|+. |++++ .+ .+|++|.+. ++.+..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 44578888888999999986 66666664 2334444332 13443 34443 32 469999775 455544
Q ss_pred eecC------ccCceEEEEEe--e-CCC-EEEEEECCCeEEEEECCC---Cc-----eeeeecCCceeEEEEcCCCCEEE
Q 009569 396 WKGQ------KTLRISDMAIT--D-DGK-RIISICREAAILLLDREA---NF-----ERWIEEEEVITSFSLSKDNKYLL 457 (532)
Q Consensus 396 ~~~~------~~~~v~~~~~s--~-~~~-~l~~~~~dg~I~iwd~~~---~~-----~~~~~~~~~i~~~~~sp~~~~l~ 457 (532)
.... ....++.+|+- | +|. +.++...+|.+.-|-+.. +. .+.+.....+..|.......+|+
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLY 223 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEE
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEE
Confidence 3321 11246777774 3 354 556677889888877642 22 33344566788999999889999
Q ss_pred EEecCCeEEEEecCCC----CcceeEEec--cccceEEEEEccCCCC--CcEEEEEeCCCcEEEEeCCCC
Q 009569 458 VNLINQEIHLWSIESD----PKLVSRYKG--HKRARFVIRSCFGGFE--QAFIASGSEDSQVNIFLSFSP 519 (532)
Q Consensus 458 ~~~~dg~i~iwd~~~~----~~~~~~~~~--~~~~~~~i~~~~~s~d--~~~l~sgs~dg~i~iw~~~~~ 519 (532)
.+-++--|.-|+..-. ...+....+ ....+..+.+.. ..+ |-+|+|.-.+++..+|+....
T Consensus 224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~-~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYY-GSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE--CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEe-cCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999988888877522 122322222 223444455544 333 334555556888999999864
No 492
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.51 E-value=42 Score=34.46 Aligned_cols=108 Identities=9% Similarity=0.089 Sum_probs=61.3
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEEeecCCeeEEEEEe----e-cCCCCeEEEEeCCCC------CEEEEee---
Q 009569 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRL----S-GHRKPVFTVSWSPND------HQLLTCG--- 336 (532)
Q Consensus 271 h~~~V~~v~~s~~g~~las~s~dg~i~iwd~~~~~~~~~~~~~----~-~h~~~v~~l~~s~~~------~~l~s~~--- 336 (532)
.-...+.|+|.|||++|++--..|.|++++..++. ......+ . ........|+++|+- .+|+...
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~-~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~ 106 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGE-VKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYK 106 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCc-eeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence 44567899999999888876557999998755332 1122111 1 125668899999873 2344332
Q ss_pred -------CCCcEEEEECCCC-----cEEEEeecc----CCceEEEEEeeCCCeEEEEeC
Q 009569 337 -------QEEAIRRWDVNSG-----ECLHVYEKT----GVGLISCGWFLDGGGIFAGMT 379 (532)
Q Consensus 337 -------~dg~i~iwd~~~~-----~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~ 379 (532)
....|.-|.+... .....+... ...-..+.|.|||.++++.+.
T Consensus 107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence 1234555554321 111222211 122356789999987775443
No 493
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.30 E-value=25 Score=31.72 Aligned_cols=99 Identities=12% Similarity=0.211 Sum_probs=62.1
Q ss_pred CeEEEEeCCCcEEEEECCC--CeE-EEeecCccCceEEEEEeeCCCEEEEEECC---C---eEEEE---ECCC-C-c---
Q 009569 372 GGIFAGMTDKSICLWDLDG--REL-ESWKGQKTLRISDMAITDDGKRIISICRE---A---AILLL---DREA-N-F--- 434 (532)
Q Consensus 372 ~~l~~~~~dg~i~iwd~~~--~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g---~I~iw---d~~~-~-~--- 434 (532)
+.++.+...+.|.+|++.+ .++ ..+... +.|..+.++..|+++++--.+ . .+++| .... . .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv--~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV--GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch--hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 4555556677899999973 222 333333 489999999999999986533 2 45554 2221 1 0
Q ss_pred eeee---------------------ecCCceeEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 009569 435 ERWI---------------------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (532)
Q Consensus 435 ~~~~---------------------~~~~~i~~~~~sp~~~~l~~~~~dg~i~iwd~~~~ 473 (532)
.+.. +...++.+++-.|-..-|++|+ ++.+.+|.+...
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 1111 2234677888888655666666 678999988654
No 494
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.09 E-value=3.4 Score=31.84 Aligned_cols=78 Identities=18% Similarity=0.203 Sum_probs=53.5
Q ss_pred cchHHHHHHHHHHHHhcChHHHHHHHhhhcCcccCCHHHHHHHHHHhcCChHHHHHHhhcCCCCChhHHHHHHHHHHHHH
Q 009569 61 IKKSEFIKIITRALYSLGYDKSGALLEEESGIPMHSSVVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSASFLILEQK 140 (532)
Q Consensus 61 i~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~~~~~~~~~~~i~~G~w~~~~~~l~~l~~~~~~~~~~~~~~i~~q~ 140 (532)
++++++-++++ ||+-.| ...-.++|.|+.+-.. .++.|+++..+..-...+ .. .-|-+.+
T Consensus 42 Lt~d~LeFv~l-f~r~RG---nlKEvEr~lg~sYptv----------R~kld~vlramgy~p~~e-~~-----~~i~~~~ 101 (122)
T COG3877 42 LTSDQLEFVEL-FLRCRG---NLKEVERELGISYPTV----------RTKLDEVLRAMGYNPDSE-NS-----VNIGKKK 101 (122)
T ss_pred cCHhHhHHHHH-HHHHcc---CHHHHHHHHCCccHHH----------HHHHHHHHHHcCCCCCCC-Ch-----hhhhHHH
Confidence 56777766655 788888 6678899999988654 355666555544332221 12 3378889
Q ss_pred HHHHHhcCCh--hHHHHHHh
Q 009569 141 FLELLRRDKV--SAALNSLR 158 (532)
Q Consensus 141 ~lelle~~~~--~~a~~~L~ 158 (532)
++.+++.|++ ++|+..|+
T Consensus 102 i~~qle~Gei~peeA~~~L~ 121 (122)
T COG3877 102 IIDQLEKGEISPEEAIKMLN 121 (122)
T ss_pred HHHHHHcCCCCHHHHHHHhc
Confidence 9999999986 57888876
No 495
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=86.04 E-value=22 Score=33.85 Aligned_cols=92 Identities=11% Similarity=0.135 Sum_probs=60.3
Q ss_pred CCcEEEEECCCCeEEEeecCccCceEEEEEeeCCCEEEEEE------CCCeEEEEECCCCce-eeee-----cCCceeEE
Q 009569 380 DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC------REAAILLLDREANFE-RWIE-----EEEVITSF 447 (532)
Q Consensus 380 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg~I~iwd~~~~~~-~~~~-----~~~~i~~~ 447 (532)
-..|++||..+.+-......-.+.|+++.|..+.+.++.|. ....+..||..+..- .+.. -.++++.+
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 45699999988777666666666899999987766676664 355688999988772 3322 23678887
Q ss_pred EEcC-CC-CEEEEEe-cCC--eEEEEecC
Q 009569 448 SLSK-DN-KYLLVNL-INQ--EIHLWSIE 471 (532)
Q Consensus 448 ~~sp-~~-~~l~~~~-~dg--~i~iwd~~ 471 (532)
.+.. |+ ++.+.|. .+| .|..||=.
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCC
Confidence 7743 33 3444443 233 46666533
No 496
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=86.03 E-value=36 Score=33.32 Aligned_cols=141 Identities=15% Similarity=0.261 Sum_probs=83.7
Q ss_pred CCeEEEEeCCCCCEEEEeeCCCc------EEEEECCC--C--cEEE-----EeeccCC--------ceEEEEEeeCCCeE
Q 009569 318 KPVFTVSWSPNDHQLLTCGQEEA------IRRWDVNS--G--ECLH-----VYEKTGV--------GLISCGWFLDGGGI 374 (532)
Q Consensus 318 ~~v~~l~~s~~~~~l~s~~~dg~------i~iwd~~~--~--~~~~-----~~~~~~~--------~i~~~~~~~~~~~l 374 (532)
+.++.+.+.+++..+++.+.+|. +...++.. + ..+. .+....+ ..-++++.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 45678888866666666677776 65555543 1 1111 1111111 33477887788777
Q ss_pred EEEeCC------CcEEEEECCCCeEEEee--------------cCccCceEEEEEeeCCCEEEEEECC-----C------
Q 009569 375 FAGMTD------KSICLWDLDGRELESWK--------------GQKTLRISDMAITDDGKRIISICRE-----A------ 423 (532)
Q Consensus 375 ~~~~~d------g~i~iwd~~~~~~~~~~--------------~~~~~~v~~~~~s~~~~~l~~~~~d-----g------ 423 (532)
++.-.+ ..|..++..+.....+. ........+++++|+|+.|+++... +
T Consensus 100 is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~ 179 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPD 179 (326)
T ss_pred EEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccccc
Confidence 776666 78888888754433221 1123368899999999977665432 1
Q ss_pred -----eEEEEECCC-Cc---e-eee-e------cCCceeEEEEcCCCCEEEE
Q 009569 424 -----AILLLDREA-NF---E-RWI-E------EEEVITSFSLSKDNKYLLV 458 (532)
Q Consensus 424 -----~I~iwd~~~-~~---~-~~~-~------~~~~i~~~~~sp~~~~l~~ 458 (532)
.|..||..+ +. . .+. . ....++.+.+-+++++|+.
T Consensus 180 ~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 180 NGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 244556554 21 1 111 1 3467889999999987765
No 497
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=85.82 E-value=54 Score=35.12 Aligned_cols=159 Identities=13% Similarity=0.136 Sum_probs=83.9
Q ss_pred CCCeEEEEeCCCCCEEEEeeCCCcEEEEECCCCcEE--EEeec-cCC-ceEEEEEee------CCCeEEEEeC-C---Cc
Q 009569 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL--HVYEK-TGV-GLISCGWFL------DGGGIFAGMT-D---KS 382 (532)
Q Consensus 317 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~-~~~-~i~~~~~~~------~~~~l~~~~~-d---g~ 382 (532)
...|..+.|.++++.+++.-.+|.|.+||...+... ..... +.. -+.+ +|-+ ...++++-+. + -.
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcEE
Confidence 567889999999999999999999999999332211 11111 111 1111 2222 1234444333 2 24
Q ss_pred EEEEEC--CCCeEEEee--cCccCceEEEEEee-CCCEEEEEECCCeEEEEECCCCc-eeeee------cC-CceeEEEE
Q 009569 383 ICLWDL--DGRELESWK--GQKTLRISDMAITD-DGKRIISICREAAILLLDREANF-ERWIE------EE-EVITSFSL 449 (532)
Q Consensus 383 i~iwd~--~~~~~~~~~--~~~~~~v~~~~~s~-~~~~l~~~~~dg~I~iwd~~~~~-~~~~~------~~-~~i~~~~~ 449 (532)
.+++.+ ++..+.... ..+........|+- +|...-. .++.|.+|++...+ ...+. .. ..+.++.-
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~ 285 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKP 285 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeec
Confidence 667777 333333332 11111233333333 4443333 77799999997766 22211 11 22333332
Q ss_pred cCCCCEEEEEecCCeEEEEecCCCCcceeEEe
Q 009569 450 SKDNKYLLVNLINQEIHLWSIESDPKLVSRYK 481 (532)
Q Consensus 450 sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 481 (532)
|..+.++.+. ++.|++.|+.-. ..+..+.
T Consensus 286 -~s~nRvLLs~-~nkIyLld~~~~-siLse~~ 314 (670)
T PF10395_consen 286 -PSPNRVLLSV-NNKIYLLDLKFE-SILSEFE 314 (670)
T ss_pred -CCCCeEEEEc-CCEEEEEeehhh-hhhhhhh
Confidence 2333444433 678999999765 4555444
No 498
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=85.77 E-value=38 Score=33.36 Aligned_cols=41 Identities=7% Similarity=-0.100 Sum_probs=20.3
Q ss_pred CcEEEEECCCCcEEEEeeccC-CceEEEEEeeCCCeEEEEeC
Q 009569 339 EAIRRWDVNSGECLHVYEKTG-VGLISCGWFLDGGGIFAGMT 379 (532)
Q Consensus 339 g~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~ 379 (532)
..+.+||..+.+-...-.... ..........+++.++.|+.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 209 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGE 209 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeee
Confidence 468889987765433211111 11111222336777777764
No 499
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=85.29 E-value=31 Score=31.87 Aligned_cols=149 Identities=18% Similarity=0.246 Sum_probs=83.8
Q ss_pred eEEEEEeeCCCeEEEEeCCCcEEEEECCCCeEEEeecCccCceEEEE--EeeCCC--EEEEEE--CCCeEEEEECCCCce
Q 009569 362 LISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMA--ITDDGK--RIISIC--REAAILLLDREANFE 435 (532)
Q Consensus 362 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--~s~~~~--~l~~~~--~dg~I~iwd~~~~~~ 435 (532)
|+--.-+|+...+++....+-+++||+.++.+..........| ++. |--.|+ -|++++ ....|.+|.+.....
T Consensus 58 IwVh~t~P~kS~vItt~Kk~Gl~VYDLsGkqLqs~~~Gk~NNV-DLrygF~LgG~~idiaaASdR~~~~i~~y~Idp~~~ 136 (364)
T COG4247 58 IWVHATNPDKSLVITTVKKAGLRVYDLSGKQLQSVNPGKYNNV-DLRYGFQLGGQSIDIAAASDRQNDKIVFYKIDPNPQ 136 (364)
T ss_pred eEeccCCcCcceEEEeeccCCeEEEecCCCeeeecCCCccccc-ccccCcccCCeEEEEEecccccCCeEEEEEeCCCcc
Confidence 4444456788888888888899999999998877765543221 111 111232 234443 345688887765541
Q ss_pred e---eee-------cCCceeEEEEcCCC----CEEEEEecCCeEEEEecCCC------CcceeEEeccccceEEEEEccC
Q 009569 436 R---WIE-------EEEVITSFSLSKDN----KYLLVNLINQEIHLWSIESD------PKLVSRYKGHKRARFVIRSCFG 495 (532)
Q Consensus 436 ~---~~~-------~~~~i~~~~~sp~~----~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~i~~~~~ 495 (532)
. ... ....+..+++..+. -++++...+|.|.-|.+... .+.++.|+-..+..-. ..
T Consensus 137 ~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~---Va- 212 (364)
T COG4247 137 YLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGM---VA- 212 (364)
T ss_pred ceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCcccce---ee-
Confidence 1 111 12234455554432 36677778898888877432 2456666554432211 11
Q ss_pred CCCCcEEEEEeCCCcEEEEeCC
Q 009569 496 GFEQAFIASGSEDSQVNIFLSF 517 (532)
Q Consensus 496 s~d~~~l~sgs~dg~i~iw~~~ 517 (532)
...-.+|+.+-+| +-||.+.
T Consensus 213 DdEtG~LYIaeEd--vaiWK~~ 232 (364)
T COG4247 213 DDETGFLYIAEED--VAIWKYE 232 (364)
T ss_pred ccccceEEEeecc--ceeeecc
Confidence 3333466667665 6677764
No 500
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=85.20 E-value=2.1 Score=34.08 Aligned_cols=78 Identities=21% Similarity=0.225 Sum_probs=50.3
Q ss_pred cchHHHHHHHHHHHHhcChHHHHHHHhhhcCcccCCHHHHHHHHHHhcCChHHHHHHhhcCCCCChhHHHHHHHHHHHHH
Q 009569 61 IKKSEFIKIITRALYSLGYDKSGALLEEESGIPMHSSVVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSASFLILEQK 140 (532)
Q Consensus 61 i~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~i~~~~~~~~~~~~~i~~G~w~~~~~~l~~l~~~~~~~~~~~~~~i~~q~ 140 (532)
++. |-...|.+|++..| +...+++|.||++.+. ..+.|+.+..|.....+.. .. ...+.+
T Consensus 34 L~~-E~~~Fi~~Fi~~rG---nlKe~e~~lgiSYPTv----------R~rLd~ii~~lg~~~~~~~-~~-----~~~~~~ 93 (113)
T PF09862_consen 34 LSP-EQLEFIKLFIKNRG---NLKEMEKELGISYPTV----------RNRLDKIIEKLGYEEDEEE-EE-----EDERKE 93 (113)
T ss_pred CCH-HHHHHHHHHHHhcC---CHHHHHHHHCCCcHHH----------HHHHHHHHHHhCCCCCccc-cc-----chhHHH
Confidence 344 55667889999999 8889999999999865 1223333333333111111 11 145778
Q ss_pred HHHHHhcCCh--hHHHHHHh
Q 009569 141 FLELLRRDKV--SAALNSLR 158 (532)
Q Consensus 141 ~lelle~~~~--~~a~~~L~ 158 (532)
+++.|+.|++ ++|++.|+
T Consensus 94 IL~~L~~GeIs~eeA~~~Lk 113 (113)
T PF09862_consen 94 ILDKLEKGEISVEEALEILK 113 (113)
T ss_pred HHHHHHcCCCCHHHHHHHhC
Confidence 8999999886 57887764
Done!