Query 009571
Match_columns 532
No_of_seqs 454 out of 2507
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 14:43:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009571.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009571hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1817 Ribonuclease [RNA proc 100.0 1.7E-45 3.6E-50 380.0 18.3 323 132-523 39-414 (533)
2 COG0571 Rnc dsRNA-specific rib 100.0 2.2E-40 4.8E-45 327.9 12.7 140 365-523 8-148 (235)
3 PRK14718 ribonuclease III; Pro 100.0 3.3E-36 7.2E-41 316.3 12.3 136 365-523 3-138 (467)
4 PRK12371 ribonuclease III; Rev 100.0 3.8E-36 8.3E-41 298.8 11.7 140 364-523 11-150 (235)
5 PRK12372 ribonuclease III; Rev 100.0 7.1E-36 1.5E-40 312.4 12.7 136 365-523 3-138 (413)
6 COG0571 Rnc dsRNA-specific rib 100.0 3.3E-34 7.3E-39 283.9 15.0 143 134-291 6-148 (235)
7 PRK12371 ribonuclease III; Rev 100.0 3.8E-33 8.1E-38 277.4 15.6 140 134-290 10-149 (235)
8 PRK14718 ribonuclease III; Pro 100.0 2.1E-32 4.6E-37 287.7 14.5 136 136-291 3-138 (467)
9 PRK12372 ribonuclease III; Rev 100.0 2.3E-32 5E-37 286.1 14.7 135 136-290 3-137 (413)
10 PRK00102 rnc ribonuclease III; 100.0 2.6E-32 5.7E-37 268.7 13.3 142 364-523 4-145 (229)
11 PF14622 Ribonucleas_3_3: Ribo 100.0 6.3E-33 1.4E-37 251.3 7.8 122 395-522 3-124 (128)
12 TIGR02191 RNaseIII ribonucleas 100.0 4.8E-31 1E-35 257.8 12.0 138 368-523 1-139 (220)
13 PRK00102 rnc ribonuclease III; 100.0 1.5E-30 3.3E-35 256.2 14.7 142 134-290 3-144 (229)
14 PF14622 Ribonucleas_3_3: Ribo 100.0 2.9E-30 6.3E-35 233.9 9.4 123 163-290 2-124 (128)
15 TIGR02191 RNaseIII ribonucleas 100.0 1.1E-29 2.4E-34 248.2 13.8 138 139-290 1-138 (220)
16 smart00535 RIBOc Ribonuclease 100.0 5.4E-29 1.2E-33 223.6 11.2 122 396-523 2-123 (129)
17 cd00593 RIBOc RIBOc. Ribonucle 100.0 2E-28 4.3E-33 220.3 10.9 125 396-524 2-126 (133)
18 KOG0701 dsRNA-specific nucleas 99.9 2E-28 4.4E-33 287.9 9.5 348 135-510 980-1518(1606)
19 smart00535 RIBOc Ribonuclease 99.9 1.7E-27 3.7E-32 213.9 11.5 122 165-291 2-123 (129)
20 cd00593 RIBOc RIBOc. Ribonucle 99.9 1.4E-26 3.1E-31 208.2 12.5 124 165-291 2-125 (133)
21 KOG1817 Ribonuclease [RNA proc 99.9 1.3E-24 2.7E-29 225.6 9.8 175 94-290 239-413 (533)
22 PF00636 Ribonuclease_3: Ribon 99.9 4.7E-24 1E-28 188.0 5.7 94 417-510 1-114 (114)
23 PF00636 Ribonuclease_3: Ribon 99.9 7.1E-23 1.5E-27 180.5 5.9 91 188-278 1-114 (114)
24 KOG0701 dsRNA-specific nucleas 99.4 9.6E-13 2.1E-17 156.7 8.8 132 395-530 1006-1195(1606)
25 KOG3769 Ribonuclease III domai 98.8 3.9E-08 8.4E-13 99.7 10.4 141 135-290 64-218 (333)
26 KOG3769 Ribonuclease III domai 98.3 2.6E-06 5.7E-11 86.6 8.5 125 395-523 80-219 (333)
27 COG1939 Ribonuclease III famil 98.0 1.8E-05 3.8E-10 71.7 6.8 101 418-524 17-129 (132)
28 COG1939 Ribonuclease III famil 97.3 0.00088 1.9E-08 60.9 7.8 97 187-289 15-126 (132)
29 PF11469 Ribonucleas_3_2: Ribo 79.9 10 0.00022 33.8 7.7 83 189-290 2-88 (120)
30 PF11469 Ribonucleas_3_2: Ribo 75.4 16 0.00035 32.6 7.7 86 420-527 4-93 (120)
31 PRK02287 hypothetical protein; 28.4 58 0.0013 31.6 3.2 26 496-521 108-133 (171)
32 PF01418 HTH_6: Helix-turn-hel 27.1 41 0.00089 27.7 1.8 44 430-473 20-64 (77)
33 PF08383 Maf_N: Maf N-terminal 25.5 28 0.00062 25.0 0.4 10 495-504 26-35 (35)
34 PRK02287 hypothetical protein; 24.0 77 0.0017 30.7 3.2 26 263-288 107-132 (171)
35 COG2042 Uncharacterized conser 23.3 76 0.0016 30.8 2.9 26 496-521 116-141 (179)
36 KOG1903 Cell cycle-associated 23.1 57 0.0012 31.5 2.1 24 64-87 5-28 (217)
37 TIGR03412 iscX_yfhJ FeS assemb 23.0 95 0.0021 25.3 3.0 25 430-454 7-33 (63)
No 1
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=100.00 E-value=1.7e-45 Score=379.95 Aligned_cols=323 Identities=22% Similarity=0.274 Sum_probs=250.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHHcCCCccccc------------------c-------------
Q 009571 132 IDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNK------------------A------------- 180 (532)
Q Consensus 132 ~~~~l~~le~~LGY~F~~~~~~~~~~p~~~~~~LL~~ALTH~S~~~~~------------------~------------- 180 (532)
.+..+.-+++.+||+|++ ..+|..|+||||+.... +
T Consensus 39 ~~~~l~~~e~~i~y~f~~-------------r~~~~lal~h~s~~~~~Gt~~dh~kns~tncg~r~~~yg~~~~~~~~kr 105 (533)
T KOG1817|consen 39 YHQSLDHLEELIGYTFQD-------------RCLLQLALTHPSHKLNYGTNPDHAKNSLTNCGIRQPKYGDRKEHIMTKR 105 (533)
T ss_pred HHHhHHHHHHHhCeeecc-------------hHHHHHHhcCchHHhhCCCCchhhhccccccCcCCcccchhHHHHHHHH
Confidence 445678899999999998 89999999999986310 0
Q ss_pred --------------------ccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHhhCcchHHHHHHHcCC
Q 009571 181 --------------------RHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASL 240 (532)
Q Consensus 181 --------------------~~~~~~yERLEFLGDaVL~lvvs~~Ly~~yP~~~eG~Lt~lRs~lVsN~~La~iA~~lgL 240 (532)
......|||||||||++.+++++.++|..+|...+|.|...|+++|.|+.++.+++++.+
T Consensus 106 ~~gin~li~imk~l~~~~~~~s~i~hnErle~lgdavve~~ss~hl~~~~~r~~eggLatyrta~vqnr~la~lakklrk 185 (533)
T KOG1817|consen 106 KLGINTLINIMKRLGVIQPTHSVIKHNERLEFLGDAVVELLSSNHLYFMFPRLEEGGLATYRTAIVQNRHLAKLAKKLRK 185 (533)
T ss_pred HhhhhHHHHHHhhccCCCCchhHhHHHHHHHHHhhccHHHHHHHHHHHccccccccchhHHHHHHHHhHHHHHHHHHHHH
Confidence 013568999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCchhhhhcccCCCCchhhHHHHHHHHHHhhcChHHHHHHHHHHh-CCCCCccccchhhhhhccccccccccccC
Q 009571 241 QNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF-GMDPEDKECQPKLRRQLEDVDYVSVEFEG 319 (532)
Q Consensus 241 ~~~I~~~~~~~~~~~~~~~KvLADvfEALIGAIylD~G~~~a~~~i~~~~-g~d~~~~~~~pkl~~~ledid~vs~ef~g 319 (532)
+.++....+.+.....+....++++|||++||+|+|.|...+.....+.+ +.++ .+.
T Consensus 186 d~fl~yahg~dl~~~~E~Kha~an~feavi~a~~l~g~~~~~e~lfs~~~~~~ep-------vle--------------- 243 (533)
T KOG1817|consen 186 DEFLLYAHGYDLCFETELKHAMANCFEAVIGAKYLDGGLVVAEKLFSRALFVYEP-------VLE--------------- 243 (533)
T ss_pred HHHHHHhcCcchhhHHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHHHHhhccCc-------hhh---------------
Confidence 99998766544433334467899999999999999999987766554432 2121 111
Q ss_pred cccchhhcccCCCchhhhhhcchhhhccCCCCCccccCCccc-CCChHHHHHHhCCCCccCCCchhhhhhhhhhhhhhhh
Q 009571 320 NKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHRFRGNLWD-FDSRPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQ 398 (532)
Q Consensus 320 ~~l~w~~i~~~~~p~dal~~~p~l~~~c~p~~~~~f~~~~~~-~~~~~~l~~~Lgy~f~~~~~~~~i~~~~n~~~~~lL~ 398 (532)
-.|.........++ . |. .+++....|- .-.+.+.++++|..|. ++. ++.
T Consensus 244 --e~w~~~~ehelq~~----e--------p~-gDr~~~~~~Ppllp~~~~e~~~g~vF~------------Hir---lla 293 (533)
T KOG1817|consen 244 --EEWEHEPEHELQEQ----E--------PA-GDRVLITKYPPLLPLTQFEEIIGIVFI------------HIR---LLA 293 (533)
T ss_pred --ccccCCCcCccccc----C--------CC-ccccccccCCCCCchhhHHHHHHHHHH------------HHH---HHH
Confidence 01221111100000 0 00 0111111111 1123567889998875 665 999
Q ss_pred hhhcCCCcccCCCCCCccchhhchhhhhhhHHHHHHHHHhCCCCCCcchHHHHHHhhCcHHHHHHHHHcCChhhHhcchh
Q 009571 399 LCFLHPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKHLDAPGHWLQEKHRRILMNKFCGRYLREKNLHRYMIYSEQ 478 (532)
Q Consensus 399 ~AltH~S~~~~~~~~~~~ERLEFLGDaVL~l~vs~~L~~~~p~~~eG~Lt~~rs~lV~~~~la~~a~~l~L~~~l~~g~~ 478 (532)
+|||-+|...++-...+|||||||||+||+++++++||.+||+++||.||.+|++||+|++-+++|..+|+++|++....
T Consensus 294 ~aft~rs~~~n~Lt~gHNqRLEFLGDSilqlv~T~ily~kFPdhhEGhLSlLRssLVsNetqakva~~lgf~e~li~n~~ 373 (533)
T KOG1817|consen 294 RAFTLRSIPFNHLTLGHNQRLEFLGDSILQLVMTEILYRKFPDHHEGHLSLLRSSLVSNETQAKVADDLGFHEYLITNFD 373 (533)
T ss_pred HHhhccCCCchhhhhhhhHHHHHhHHHHHHHHHHHHHHHhCCccccchHHHHHHHHhccHHHHHHHHHhCCchhhhhCcc
Confidence 99999996444334568999999999999999999999999999999999999999999999999999999999999865
Q ss_pred hhhhhhccccCCCchHHhHHHHHHHHHHhhCCchHHHHHHHHhcc
Q 009571 479 VQDAYEHNRRLRNPSTTAVQQALHGLAYTVYGKPDVRRLMFEVFD 523 (532)
Q Consensus 479 ~~~~~~~~~~~~~~~l~d~~EAliGAiYLd~G~~~~~~~v~~~~~ 523 (532)
..+. -+.+....||+|||+|||+|+|.|.+.+++|+..+|-
T Consensus 374 ~k~~----~~lk~K~~ADlfEAfiGaLyvD~~le~~~qf~~~l~~ 414 (533)
T KOG1817|consen 374 LKDF----QNLKLKDYADLFEAFIGALYVDKGLEYCRQFLRVLFF 414 (533)
T ss_pred hhhh----hhhhHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhh
Confidence 4332 3456678999999999999999999999999999883
No 2
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=100.00 E-value=2.2e-40 Score=327.89 Aligned_cols=140 Identities=25% Similarity=0.313 Sum_probs=130.9
Q ss_pred hHHHHHHhCCCCccCCCchhhhhhhhhhhhhhhhhhhcCCCcccCCC-CCCccchhhchhhhhhhHHHHHHHHHhCCCCC
Q 009571 365 RPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEH-PRFCFERLEYVGQKIQDLVMAERLLMKHLDAP 443 (532)
Q Consensus 365 ~~~l~~~Lgy~f~~~~~~~~i~~~~n~~~~~lL~~AltH~S~~~~~~-~~~~~ERLEFLGDaVL~l~vs~~L~~~~p~~~ 443 (532)
+..+++.+||+|+ |.+ ||.+||||+||.+ ++ ...+||||||||||||+++|++|||++||+.+
T Consensus 8 ~~~l~~~lg~~f~------------~~~---lL~~AltH~S~~~-e~~~~~~nERLEFLGDavL~l~vae~Lf~~yP~~~ 71 (235)
T COG0571 8 LEALEKKLGYTFK------------DKE---LLEQALTHRSYAN-EHKAVENNERLEFLGDAVLGLVVAEYLFKKYPNLP 71 (235)
T ss_pred HHHHHHHhCCCcC------------CHH---HHHHHhcCcchhc-cccCCcchHHHHhhHHHHHHHHHHHHHHHHCCCCC
Confidence 4678999999998 344 9999999999744 44 45689999999999999999999999999999
Q ss_pred CcchHHHHHHhhCcHHHHHHHHHcCChhhHhcchhhhhhhhccccCCCchHHhHHHHHHHHHHhhCCchHHHHHHHHhcc
Q 009571 444 GHWLQEKHRRILMNKFCGRYLREKNLHRYMIYSEQVQDAYEHNRRLRNPSTTAVQQALHGLAYTVYGKPDVRRLMFEVFD 523 (532)
Q Consensus 444 eG~Lt~~rs~lV~~~~la~~a~~l~L~~~l~~g~~~~~~~~~~~~~~~~~l~d~~EAliGAiYLd~G~~~~~~~v~~~~~ 523 (532)
||+||++|+.+||+++|+.+|+++||++||++|+|+..+| |+.++++++|+|||+|||||||+|+++|++||.++|.
T Consensus 72 EG~Ls~~ra~lV~~~~La~ia~~l~l~~~l~lg~ge~~~g---g~~~~silaD~~EAligAiylD~g~~~~~~~i~~l~~ 148 (235)
T COG0571 72 EGELSKLRAALVSEESLAEIARELGLGDYLRLGKGEEKSG---GRRRESILADAFEALIGAIYLDSGLEAARKFILKLFL 148 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccchhhccCChhhcC---CCCchhHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988 9999999999999999999999999999999999993
No 3
>PRK14718 ribonuclease III; Provisional
Probab=100.00 E-value=3.3e-36 Score=316.34 Aligned_cols=136 Identities=16% Similarity=0.128 Sum_probs=126.1
Q ss_pred hHHHHHHhCCCCccCCCchhhhhhhhhhhhhhhhhhhcCCCcccCCCCCCccchhhchhhhhhhHHHHHHHHHhCCCCCC
Q 009571 365 RPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKHLDAPG 444 (532)
Q Consensus 365 ~~~l~~~Lgy~f~~~~~~~~i~~~~n~~~~~lL~~AltH~S~~~~~~~~~~~ERLEFLGDaVL~l~vs~~L~~~~p~~~e 444 (532)
+..|+++|||.|+ |++ ||.+||||+||.. .+|||||||||+||+++|++|||++||+++|
T Consensus 3 l~~LEkrLGY~Fk------------n~~---LL~eALTH~Sys~-----e~NERLEFLGDAVL~liVse~Lf~~fPdl~E 62 (467)
T PRK14718 3 LSQLESRLRYEFR------------NAE---LLRQALTHRSHSA-----THNERLEFLGDSVLNCAVAALLFQRFGKLDE 62 (467)
T ss_pred HHHHHHHhCCCcC------------CHH---HHHHHHhccCcCc-----ccHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 4578999999997 454 9999999999743 3799999999999999999999999999999
Q ss_pred cchHHHHHHhhCcHHHHHHHHHcCChhhHhcchhhhhhhhccccCCCchHHhHHHHHHHHHHhhCCchHHHHHHHHhcc
Q 009571 445 HWLQEKHRRILMNKFCGRYLREKNLHRYMIYSEQVQDAYEHNRRLRNPSTTAVQQALHGLAYTVYGKPDVRRLMFEVFD 523 (532)
Q Consensus 445 G~Lt~~rs~lV~~~~la~~a~~l~L~~~l~~g~~~~~~~~~~~~~~~~~l~d~~EAliGAiYLd~G~~~~~~~v~~~~~ 523 (532)
|+||++|+.|||+++|+.+|+++||++||++|+|+..++ |+.++++++|+|||||||||||+||+.+++||.++|.
T Consensus 63 GeLT~LRS~LVSnetLA~IAr~LGL~d~Lrlg~gE~~sg---G~~~~sILADvFEALIGAIYLDsG~e~a~~fI~~ll~ 138 (467)
T PRK14718 63 GDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSG---GFRRPSILADAFEAIIGAVFLDGGFEAAQGVIKRLYV 138 (467)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHcCchHHHhhCCcccccC---CCCChhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987665 6778899999999999999999999999999999984
No 4
>PRK12371 ribonuclease III; Reviewed
Probab=100.00 E-value=3.8e-36 Score=298.76 Aligned_cols=140 Identities=21% Similarity=0.248 Sum_probs=126.5
Q ss_pred ChHHHHHHhCCCCccCCCchhhhhhhhhhhhhhhhhhhcCCCcccCCCCCCccchhhchhhhhhhHHHHHHHHHhCCCCC
Q 009571 364 SRPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKHLDAP 443 (532)
Q Consensus 364 ~~~~l~~~Lgy~f~~~~~~~~i~~~~n~~~~~lL~~AltH~S~~~~~~~~~~~ERLEFLGDaVL~l~vs~~L~~~~p~~~ 443 (532)
.+..++++|||+|+ |++ ||.+||||+|+... ...+||||||||||||+++|++|||++||+.+
T Consensus 11 ~~~~le~~lgy~F~------------~~~---Ll~~AlTH~S~~~~--~~~~~eRLEFLGDavL~l~vs~~Lf~~~p~~~ 73 (235)
T PRK12371 11 TASILEERTGHRFA------------NKE---RLERALTHSSARAS--KQGNYERLEFLGDRVLGLCVAEMLFEAFPDAS 73 (235)
T ss_pred HHHHHHHHHCCCCC------------CHH---HHHHHHcCcCcccC--CccchHhHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34679999999997 444 99999999997542 23589999999999999999999999999999
Q ss_pred CcchHHHHHHhhCcHHHHHHHHHcCChhhHhcchhhhhhhhccccCCCchHHhHHHHHHHHHHhhCCchHHHHHHHHhcc
Q 009571 444 GHWLQEKHRRILMNKFCGRYLREKNLHRYMIYSEQVQDAYEHNRRLRNPSTTAVQQALHGLAYTVYGKPDVRRLMFEVFD 523 (532)
Q Consensus 444 eG~Lt~~rs~lV~~~~la~~a~~l~L~~~l~~g~~~~~~~~~~~~~~~~~l~d~~EAliGAiYLd~G~~~~~~~v~~~~~ 523 (532)
||+||++|+.+|||++|+.+|+++||++||+.|.++...+ |+.+.++++|+|||+|||||||+|++.|++||.++|.
T Consensus 74 eG~Lt~~rs~lV~n~~La~ia~~lgL~~~i~~~~~~~~~~---~~~~~~ilad~~EAliGAiylD~G~~~a~~~i~~~~~ 150 (235)
T PRK12371 74 EGELSVRLNQLVNAETCAAIADEIGLHDLIRTGSDVKKLT---GKRLLNVRADVVEALIAAIYLDGGLEAARPFIQRYWQ 150 (235)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHCCcHHHhccCcchhhcC---CcccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998876544 6667789999999999999999999999999999995
No 5
>PRK12372 ribonuclease III; Reviewed
Probab=100.00 E-value=7.1e-36 Score=312.36 Aligned_cols=136 Identities=16% Similarity=0.130 Sum_probs=125.9
Q ss_pred hHHHHHHhCCCCccCCCchhhhhhhhhhhhhhhhhhhcCCCcccCCCCCCccchhhchhhhhhhHHHHHHHHHhCCCCCC
Q 009571 365 RPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKHLDAPG 444 (532)
Q Consensus 365 ~~~l~~~Lgy~f~~~~~~~~i~~~~n~~~~~lL~~AltH~S~~~~~~~~~~~ERLEFLGDaVL~l~vs~~L~~~~p~~~e 444 (532)
+..|+++|||.|+ |.+ ||.+||||+||.. .+|||||||||+||+++|++|||++||+++|
T Consensus 3 l~~LEk~LGY~Fk------------n~~---LL~eALTH~Sy~~-----~~NERLEFLGDAVL~liVse~Lf~~fP~~~E 62 (413)
T PRK12372 3 LSQLESRLRYEFR------------NAE---LLRQALTHRSHSA-----THNERLEFLGDSVLNCAVAALLFQRFGKLDE 62 (413)
T ss_pred HHHHHHHhCCCcC------------CHH---HHHHHHhcccccc-----ccHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 4578999999997 454 9999999999743 3799999999999999999999999999999
Q ss_pred cchHHHHHHhhCcHHHHHHHHHcCChhhHhcchhhhhhhhccccCCCchHHhHHHHHHHHHHhhCCchHHHHHHHHhcc
Q 009571 445 HWLQEKHRRILMNKFCGRYLREKNLHRYMIYSEQVQDAYEHNRRLRNPSTTAVQQALHGLAYTVYGKPDVRRLMFEVFD 523 (532)
Q Consensus 445 G~Lt~~rs~lV~~~~la~~a~~l~L~~~l~~g~~~~~~~~~~~~~~~~~l~d~~EAliGAiYLd~G~~~~~~~v~~~~~ 523 (532)
|+||++|+.|||+++|+.+|+++||++||++|+|+..++ |+.++++++|+|||||||||||+|++.++.||.++|.
T Consensus 63 G~LT~lRS~LVsn~tLA~IA~~LgL~~~Lrlg~ge~~sg---g~~~~kILADvfEALIGAIYLDsG~e~a~~fV~~ll~ 138 (413)
T PRK12372 63 GDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSG---GFRRPSILADAFEAIIGAVFLDGGFEAAQGVIKRLYV 138 (413)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHcCchHhhhcCcchhhcC---CCCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987665 6778899999999999999999999999999999984
No 6
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=100.00 E-value=3.3e-34 Score=283.88 Aligned_cols=143 Identities=24% Similarity=0.380 Sum_probs=135.7
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHHcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCC
Q 009571 134 EYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRE 213 (532)
Q Consensus 134 ~~l~~le~~LGY~F~~~~~~~~~~p~~~~~~LL~~ALTH~S~~~~~~~~~~~~yERLEFLGDaVL~lvvs~~Ly~~yP~~ 213 (532)
..+..+++.+||+|++ ++||.+||||+||.+++. ...||||||||||+||+++|+++||++||+.
T Consensus 6 ~~~~~l~~~lg~~f~~-------------~~lL~~AltH~S~~~e~~--~~~~nERLEFLGDavL~l~vae~Lf~~yP~~ 70 (235)
T COG0571 6 KKLEALEKKLGYTFKD-------------KELLEQALTHRSYANEHK--AVENNERLEFLGDAVLGLVVAEYLFKKYPNL 70 (235)
T ss_pred HHHHHHHHHhCCCcCC-------------HHHHHHHhcCcchhcccc--CCcchHHHHhhHHHHHHHHHHHHHHHHCCCC
Confidence 3567899999999998 899999999999988642 4679999999999999999999999999999
Q ss_pred ChhhHHHHHHHhhCcchHHHHHHHcCCCcccCCCchhhhhcccCCCCchhhHHHHHHHHHHhhcChHHHHHHHHHHhC
Q 009571 214 SPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFG 291 (532)
Q Consensus 214 ~eG~Lt~lRs~lVsN~~La~iA~~lgL~~~I~~~~~~~~~~~~~~~KvLADvfEALIGAIylD~G~~~a~~~i~~~~g 291 (532)
+||.||.+|+.+||+.+|+.+|+.+||++||+.++++...+++.+++++||+|||+|||||+|+|++.|++|+.++|.
T Consensus 71 ~EG~Ls~~ra~lV~~~~La~ia~~l~l~~~l~lg~ge~~~gg~~~~silaD~~EAligAiylD~g~~~~~~~i~~l~~ 148 (235)
T COG0571 71 PEGELSKLRAALVSEESLAEIARELGLGDYLRLGKGEEKSGGRRRESILADAFEALIGAIYLDSGLEAARKFILKLFL 148 (235)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCccchhhccCChhhcCCCCchhHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999883
No 7
>PRK12371 ribonuclease III; Reviewed
Probab=100.00 E-value=3.8e-33 Score=277.36 Aligned_cols=140 Identities=21% Similarity=0.248 Sum_probs=128.6
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHHcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCC
Q 009571 134 EYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRE 213 (532)
Q Consensus 134 ~~l~~le~~LGY~F~~~~~~~~~~p~~~~~~LL~~ALTH~S~~~~~~~~~~~~yERLEFLGDaVL~lvvs~~Ly~~yP~~ 213 (532)
+.+..+++++||+|++ +.||.+||||+|+.+. ...||||||||||+||+++|+++||.+||+.
T Consensus 10 ~~~~~le~~lgy~F~~-------------~~Ll~~AlTH~S~~~~----~~~~~eRLEFLGDavL~l~vs~~Lf~~~p~~ 72 (235)
T PRK12371 10 ATASILEERTGHRFAN-------------KERLERALTHSSARAS----KQGNYERLEFLGDRVLGLCVAEMLFEAFPDA 72 (235)
T ss_pred HHHHHHHHHHCCCCCC-------------HHHHHHHHcCcCcccC----CccchHhHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4567899999999998 8999999999999763 2358999999999999999999999999999
Q ss_pred ChhhHHHHHHHhhCcchHHHHHHHcCCCcccCCCchhhhhcccCCCCchhhHHHHHHHHHHhhcChHHHHHHHHHHh
Q 009571 214 SPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF 290 (532)
Q Consensus 214 ~eG~Lt~lRs~lVsN~~La~iA~~lgL~~~I~~~~~~~~~~~~~~~KvLADvfEALIGAIylD~G~~~a~~~i~~~~ 290 (532)
++|.||.+|+.+|||.+|+.+|.++||++||+.+++.....++..++++||+|||+|||||+|+|++.|++||.++|
T Consensus 73 ~eG~Lt~~rs~lV~n~~La~ia~~lgL~~~i~~~~~~~~~~~~~~~~ilad~~EAliGAiylD~G~~~a~~~i~~~~ 149 (235)
T PRK12371 73 SEGELSVRLNQLVNAETCAAIADEIGLHDLIRTGSDVKKLTGKRLLNVRADVVEALIAAIYLDGGLEAARPFIQRYW 149 (235)
T ss_pred CHHHHHHHHHHHhChHHHHHHHHHCCcHHHhccCcchhhcCCcccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988765555555679999999999999999999999999999987
No 8
>PRK14718 ribonuclease III; Provisional
Probab=99.98 E-value=2.1e-32 Score=287.74 Aligned_cols=136 Identities=22% Similarity=0.270 Sum_probs=127.2
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHHcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCCh
Q 009571 136 LLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESP 215 (532)
Q Consensus 136 l~~le~~LGY~F~~~~~~~~~~p~~~~~~LL~~ALTH~S~~~~~~~~~~~~yERLEFLGDaVL~lvvs~~Ly~~yP~~~e 215 (532)
+..|+++|||+|++ ..||.+||||+||.. .+|||||||||+||+++|+++||++||+++|
T Consensus 3 l~~LEkrLGY~Fkn-------------~~LL~eALTH~Sys~-------e~NERLEFLGDAVL~liVse~Lf~~fPdl~E 62 (467)
T PRK14718 3 LSQLESRLRYEFRN-------------AELLRQALTHRSHSA-------THNERLEFLGDSVLNCAVAALLFQRFGKLDE 62 (467)
T ss_pred HHHHHHHhCCCcCC-------------HHHHHHHHhccCcCc-------ccHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 45789999999998 899999999999964 4899999999999999999999999999999
Q ss_pred hhHHHHHHHhhCcchHHHHHHHcCCCcccCCCchhhhhcccCCCCchhhHHHHHHHHHHhhcChHHHHHHHHHHhC
Q 009571 216 APMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFG 291 (532)
Q Consensus 216 G~Lt~lRs~lVsN~~La~iA~~lgL~~~I~~~~~~~~~~~~~~~KvLADvfEALIGAIylD~G~~~a~~~i~~~~g 291 (532)
|.||.+|+.+|||.+|+.+|+++||++||+.+.++...++..++++++|+|||||||||+|+|++.++.||.++|.
T Consensus 63 GeLT~LRS~LVSnetLA~IAr~LGL~d~Lrlg~gE~~sgG~~~~sILADvFEALIGAIYLDsG~e~a~~fI~~ll~ 138 (467)
T PRK14718 63 GDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVIKRLYV 138 (467)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHcCchHHHhhCCcccccCCCCChhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987766666678999999999999999999999999999998873
No 9
>PRK12372 ribonuclease III; Reviewed
Probab=99.98 E-value=2.3e-32 Score=286.06 Aligned_cols=135 Identities=22% Similarity=0.277 Sum_probs=126.7
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHHcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCCh
Q 009571 136 LLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESP 215 (532)
Q Consensus 136 l~~le~~LGY~F~~~~~~~~~~p~~~~~~LL~~ALTH~S~~~~~~~~~~~~yERLEFLGDaVL~lvvs~~Ly~~yP~~~e 215 (532)
+..|+++|||+|++ +.||.+||||+||.+ .+|||||||||+||+++|+++||++||++++
T Consensus 3 l~~LEk~LGY~Fkn-------------~~LL~eALTH~Sy~~-------~~NERLEFLGDAVL~liVse~Lf~~fP~~~E 62 (413)
T PRK12372 3 LSQLESRLRYEFRN-------------AELLRQALTHRSHSA-------THNERLEFLGDSVLNCAVAALLFQRFGKLDE 62 (413)
T ss_pred HHHHHHHhCCCcCC-------------HHHHHHHHhcccccc-------ccHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 35689999999998 899999999999854 4899999999999999999999999999999
Q ss_pred hhHHHHHHHhhCcchHHHHHHHcCCCcccCCCchhhhhcccCCCCchhhHHHHHHHHHHhhcChHHHHHHHHHHh
Q 009571 216 APMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF 290 (532)
Q Consensus 216 G~Lt~lRs~lVsN~~La~iA~~lgL~~~I~~~~~~~~~~~~~~~KvLADvfEALIGAIylD~G~~~a~~~i~~~~ 290 (532)
|.||.+|+.+|||.+|+.+|+++||.+||+.+.++...++..++++++|+|||||||||+|+|++.++.||.++|
T Consensus 63 G~LT~lRS~LVsn~tLA~IA~~LgL~~~Lrlg~ge~~sgg~~~~kILADvfEALIGAIYLDsG~e~a~~fV~~ll 137 (413)
T PRK12372 63 GDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVIKRLY 137 (413)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHcCchHhhhcCcchhhcCCCCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999998876666667899999999999999999999999999999887
No 10
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.98 E-value=2.6e-32 Score=268.69 Aligned_cols=142 Identities=22% Similarity=0.291 Sum_probs=126.7
Q ss_pred ChHHHHHHhCCCCccCCCchhhhhhhhhhhhhhhhhhhcCCCcccCCCCCCccchhhchhhhhhhHHHHHHHHHhCCCCC
Q 009571 364 SRPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKHLDAP 443 (532)
Q Consensus 364 ~~~~l~~~Lgy~f~~~~~~~~i~~~~n~~~~~lL~~AltH~S~~~~~~~~~~~ERLEFLGDaVL~l~vs~~L~~~~p~~~ 443 (532)
.+..++++|||+|+ |.+ ||.+||||+|+....+...+||||||||||||+++|++|||.+||+.+
T Consensus 4 ~~~~l~~~lg~~f~------------~~~---ll~~Alth~S~~~~~~~~~~nerLefLGDavl~~~v~~~l~~~~p~~~ 68 (229)
T PRK00102 4 DLEELQKKLGYTFK------------DPE---LLIQALTHRSYANENKGLKHNERLEFLGDAVLELVVSEYLFKRFPDLD 68 (229)
T ss_pred hHHHHHHHhCCCCC------------CHH---HHHHHhCccchhccCCCcccchhHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 35689999999997 343 999999999985533445689999999999999999999999999999
Q ss_pred CcchHHHHHHhhCcHHHHHHHHHcCChhhHhcchhhhhhhhccccCCCchHHhHHHHHHHHHHhhCCchHHHHHHHHhcc
Q 009571 444 GHWLQEKHRRILMNKFCGRYLREKNLHRYMIYSEQVQDAYEHNRRLRNPSTTAVQQALHGLAYTVYGKPDVRRLMFEVFD 523 (532)
Q Consensus 444 eG~Lt~~rs~lV~~~~la~~a~~l~L~~~l~~g~~~~~~~~~~~~~~~~~l~d~~EAliGAiYLd~G~~~~~~~v~~~~~ 523 (532)
||.||.+|+.+||+++|+.+|+++||++||+.++++...+ +..++++++|+|||+|||||+|.|++.|++|+.++|.
T Consensus 69 ~g~l~~~~~~lvsn~~la~~a~~lgl~~~i~~~~~~~~~~---~~~~~k~~ad~~EA~iGAiyld~g~~~~~~~i~~~~~ 145 (229)
T PRK00102 69 EGDLSKLRAALVREESLAEIARELGLGEYLLLGKGEEKSG---GRRRPSILADAFEALIGAIYLDQGLEAARKFILRLFE 145 (229)
T ss_pred hhHHHHHHHHHhCHHHHHHHHHHCCcHHHHccCcHHHHcC---CCCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998765433 4566789999999999999999999999999998883
No 11
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B.
Probab=99.98 E-value=6.3e-33 Score=251.32 Aligned_cols=122 Identities=18% Similarity=0.190 Sum_probs=103.4
Q ss_pred hhhhhhhcCCCcccCCCCCCccchhhchhhhhhhHHHHHHHHHhCCCCCCcchHHHHHHhhCcHHHHHHHHHcCChhhHh
Q 009571 395 LGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKHLDAPGHWLQEKHRRILMNKFCGRYLREKNLHRYMI 474 (532)
Q Consensus 395 ~lL~~AltH~S~~~~~~~~~~~ERLEFLGDaVL~l~vs~~L~~~~p~~~eG~Lt~~rs~lV~~~~la~~a~~l~L~~~l~ 474 (532)
.||.+||||+||.+.. ..+|||||||||+||+++|++|||+++|. ++|.||+.|+.+|++++|+.+|+++||+++|+
T Consensus 3 ~Ll~~alTH~S~~~~~--~~~nerLefLGd~vL~~~vs~~l~~~~~~-~~g~l~~~~~~lv~~~~La~~a~~lgL~~~i~ 79 (128)
T PF14622_consen 3 ELLLQALTHKSYAHER--KPNNERLEFLGDAVLGLVVSEYLFQRPPA-DEGELTRLRSNLVSNETLAEIAKQLGLDKLIR 79 (128)
T ss_dssp HHHHHHTB-HHHHHHT--CB-SHHHHHHHHHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHSHHHHHHHHHHTTCGGC-B
T ss_pred HHHHHHhcCccccccc--cCccHHHHHHHHHHHHHHHHHHHHhCcCc-cchHHHHHHHHHhChHHHHHHHHHCCHHHHHH
Confidence 3899999999985422 36899999999999999999999999554 89999999999999999999999999999999
Q ss_pred cchhhhhhhhccccCCCchHHhHHHHHHHHHHhhCCchHHHHHHHHhc
Q 009571 475 YSEQVQDAYEHNRRLRNPSTTAVQQALHGLAYTVYGKPDVRRLMFEVF 522 (532)
Q Consensus 475 ~g~~~~~~~~~~~~~~~~~l~d~~EAliGAiYLd~G~~~~~~~v~~~~ 522 (532)
.++++...+ ++.+.++++|+|||+|||||+|.|+++|++||.+++
T Consensus 80 ~~~~~~~~~---~~~~~~vlad~feAliGAiyld~G~~~a~~~i~~~i 124 (128)
T PF14622_consen 80 WGPGEEKSG---GSGSDKVLADVFEALIGAIYLDSGFEAARKFIQKLI 124 (128)
T ss_dssp --HHHHHTT---GGG-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred hCccHhhcC---CCCCccHHHhHHHHHHHHHHHHcCHHHHHHHHHHHh
Confidence 998776554 566778999999999999999999999999999876
No 12
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=99.97 E-value=4.8e-31 Score=257.80 Aligned_cols=138 Identities=22% Similarity=0.284 Sum_probs=122.8
Q ss_pred HHHHhCCCCccCCCchhhhhhhhhhhhhhhhhhhcCCCcccCC-CCCCccchhhchhhhhhhHHHHHHHHHhCCCCCCcc
Q 009571 368 VMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFE-HPRFCFERLEYVGQKIQDLVMAERLLMKHLDAPGHW 446 (532)
Q Consensus 368 l~~~Lgy~f~~~~~~~~i~~~~n~~~~~lL~~AltH~S~~~~~-~~~~~~ERLEFLGDaVL~l~vs~~L~~~~p~~~eG~ 446 (532)
++++|||+|+ |.+ ||.+||||+|+.... +...+|||||||||+||++++++|||.+||+.++|.
T Consensus 1 ~e~~lgy~F~------------~~~---ll~~Alth~S~~~~~~~~~~~nerLe~lGd~vl~~~~~~~l~~~~p~~~~~~ 65 (220)
T TIGR02191 1 LEKRLGYKFK------------NKE---LLEQALTHSSYANEHHKGVKNNERLEFLGDAVLGLVVAEYLFKNFPDLSEGE 65 (220)
T ss_pred ChHHhCCCcC------------CHH---HHHHHhcCcccccccccCccchHHHHHHHHHHHHHHHHHHHHHhCCCCCchH
Confidence 4789999997 343 999999999985432 345689999999999999999999999999999999
Q ss_pred hHHHHHHhhCcHHHHHHHHHcCChhhHhcchhhhhhhhccccCCCchHHhHHHHHHHHHHhhCCchHHHHHHHHhcc
Q 009571 447 LQEKHRRILMNKFCGRYLREKNLHRYMIYSEQVQDAYEHNRRLRNPSTTAVQQALHGLAYTVYGKPDVRRLMFEVFD 523 (532)
Q Consensus 447 Lt~~rs~lV~~~~la~~a~~l~L~~~l~~g~~~~~~~~~~~~~~~~~l~d~~EAliGAiYLd~G~~~~~~~v~~~~~ 523 (532)
||++|+.+|++++|+.+|.++||++||+.++++.... ++..+..++|+|||+|||||+|.|++.|++||.++|.
T Consensus 66 l~~~~~~lvsn~~la~~a~~~gl~~~i~~~~~~~~~~---~~~~~k~~ad~~eAliGAiyld~g~~~~~~~i~~~~~ 139 (220)
T TIGR02191 66 LSKLRAALVSEESLAEVARELGLGKFLLLGKGEEKSG---GRRRESILADAFEALIGAIYLDSGLEAARKFILKLLI 139 (220)
T ss_pred HHHHHHHHhCHHHHHHHHHHCCcHHHhccCchHhhcC---CcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998765432 5566789999999999999999999999999998873
No 13
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.97 E-value=1.5e-30 Score=256.18 Aligned_cols=142 Identities=25% Similarity=0.393 Sum_probs=128.6
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHHcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCC
Q 009571 134 EYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRE 213 (532)
Q Consensus 134 ~~l~~le~~LGY~F~~~~~~~~~~p~~~~~~LL~~ALTH~S~~~~~~~~~~~~yERLEFLGDaVL~lvvs~~Ly~~yP~~ 213 (532)
..+..++++|||+|++ +.|+.+||||+|+.... ....+|||||||||+||+++++++||.+||+.
T Consensus 3 ~~~~~l~~~lg~~f~~-------------~~ll~~Alth~S~~~~~--~~~~~nerLefLGDavl~~~v~~~l~~~~p~~ 67 (229)
T PRK00102 3 KDLEELQKKLGYTFKD-------------PELLIQALTHRSYANEN--KGLKHNERLEFLGDAVLELVVSEYLFKRFPDL 67 (229)
T ss_pred hhHHHHHHHhCCCCCC-------------HHHHHHHhCccchhccC--CCcccchhHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 3567899999999998 89999999999996531 23579999999999999999999999999999
Q ss_pred ChhhHHHHHHHhhCcchHHHHHHHcCCCcccCCCchhhhhcccCCCCchhhHHHHHHHHHHhhcChHHHHHHHHHHh
Q 009571 214 SPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF 290 (532)
Q Consensus 214 ~eG~Lt~lRs~lVsN~~La~iA~~lgL~~~I~~~~~~~~~~~~~~~KvLADvfEALIGAIylD~G~~~a~~~i~~~~ 290 (532)
++|.|+.+|+.+|||.+|+.+|.++||+++|+++++........++|+++|+|||+|||||+|+|++.|.+|+.+++
T Consensus 68 ~~g~l~~~~~~lvsn~~la~~a~~lgl~~~i~~~~~~~~~~~~~~~k~~ad~~EA~iGAiyld~g~~~~~~~i~~~~ 144 (229)
T PRK00102 68 DEGDLSKLRAALVREESLAEIARELGLGEYLLLGKGEEKSGGRRRPSILADAFEALIGAIYLDQGLEAARKFILRLF 144 (229)
T ss_pred ChhHHHHHHHHHhCHHHHHHHHHHCCcHHHHccCcHHHHcCCCCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987654444445689999999999999999999999999998886
No 14
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B.
Probab=99.96 E-value=2.9e-30 Score=233.90 Aligned_cols=123 Identities=28% Similarity=0.381 Sum_probs=106.4
Q ss_pred HHHHHHHHcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHhhCcchHHHHHHHcCCCc
Q 009571 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQN 242 (532)
Q Consensus 163 ~~LL~~ALTH~S~~~~~~~~~~~~yERLEFLGDaVL~lvvs~~Ly~~yP~~~eG~Lt~lRs~lVsN~~La~iA~~lgL~~ 242 (532)
++|+.+||||+||.++. ..+|||||||||+||++++++++|+++|. ++|.++..|+.+|++++|+.+|+++||++
T Consensus 2 ~~Ll~~alTH~S~~~~~----~~~nerLefLGd~vL~~~vs~~l~~~~~~-~~g~l~~~~~~lv~~~~La~~a~~lgL~~ 76 (128)
T PF14622_consen 2 DELLLQALTHKSYAHER----KPNNERLEFLGDAVLGLVVSEYLFQRPPA-DEGELTRLRSNLVSNETLAEIAKQLGLDK 76 (128)
T ss_dssp HHHHHHHTB-HHHHHHT----CB-SHHHHHHHHHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHSHHHHHHHHHHTTCGG
T ss_pred HHHHHHHhcCccccccc----cCccHHHHHHHHHHHHHHHHHHHHhCcCc-cchHHHHHHHHHhChHHHHHHHHHCCHHH
Confidence 78999999999997653 47999999999999999999999999655 89999999999999999999999999999
Q ss_pred ccCCCchhhhhcccCCCCchhhHHHHHHHHHHhhcChHHHHHHHHHHh
Q 009571 243 LIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF 290 (532)
Q Consensus 243 ~I~~~~~~~~~~~~~~~KvLADvfEALIGAIylD~G~~~a~~~i~~~~ 290 (532)
+|+++++......+..++++||+|||+|||||+|+|++.|++||.+++
T Consensus 77 ~i~~~~~~~~~~~~~~~~vlad~feAliGAiyld~G~~~a~~~i~~~i 124 (128)
T PF14622_consen 77 LIRWGPGEEKSGGSGSDKVLADVFEALIGAIYLDSGFEAARKFIQKLI 124 (128)
T ss_dssp C-B--HHHHHTTGGG-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHhCccHhhcCCCCCccHHHhHHHHHHHHHHHHcCHHHHHHHHHHHh
Confidence 999987655555666789999999999999999999999999999876
No 15
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=99.96 E-value=1.1e-29 Score=248.24 Aligned_cols=138 Identities=23% Similarity=0.388 Sum_probs=124.9
Q ss_pred HHHHhCCCCCCCCCCCCCCCCCChHHHHHHHHcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCChhhH
Q 009571 139 AKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPM 218 (532)
Q Consensus 139 le~~LGY~F~~~~~~~~~~p~~~~~~LL~~ALTH~S~~~~~~~~~~~~yERLEFLGDaVL~lvvs~~Ly~~yP~~~eG~L 218 (532)
+|++|||+|++ ++|+.+|||||||.+.. .....+|||||||||+||++++++++|.+||+.++|.|
T Consensus 1 ~e~~lgy~F~~-------------~~ll~~Alth~S~~~~~-~~~~~~nerLe~lGd~vl~~~~~~~l~~~~p~~~~~~l 66 (220)
T TIGR02191 1 LEKRLGYKFKN-------------KELLEQALTHSSYANEH-HKGVKNNERLEFLGDAVLGLVVAEYLFKNFPDLSEGEL 66 (220)
T ss_pred ChHHhCCCcCC-------------HHHHHHHhcCccccccc-ccCccchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHH
Confidence 47899999998 89999999999997542 12346999999999999999999999999999999999
Q ss_pred HHHHHHhhCcchHHHHHHHcCCCcccCCCchhhhhcccCCCCchhhHHHHHHHHHHhhcChHHHHHHHHHHh
Q 009571 219 RERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF 290 (532)
Q Consensus 219 t~lRs~lVsN~~La~iA~~lgL~~~I~~~~~~~~~~~~~~~KvLADvfEALIGAIylD~G~~~a~~~i~~~~ 290 (532)
+.+|+.+|||++|+.+|.++||+++|+++++.....++..++++||+|||+|||||+|+|++.|.+|+.+++
T Consensus 67 ~~~~~~lvsn~~la~~a~~~gl~~~i~~~~~~~~~~~~~~~k~~ad~~eAliGAiyld~g~~~~~~~i~~~~ 138 (220)
T TIGR02191 67 SKLRAALVSEESLAEVARELGLGKFLLLGKGEEKSGGRRRESILADAFEALIGAIYLDSGLEAARKFILKLL 138 (220)
T ss_pred HHHHHHHhCHHHHHHHHHHCCcHHHhccCchHhhcCCcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999999999999999987655444455689999999999999999999999999998886
No 16
>smart00535 RIBOc Ribonuclease III family.
Probab=99.96 E-value=5.4e-29 Score=223.58 Aligned_cols=122 Identities=21% Similarity=0.206 Sum_probs=110.1
Q ss_pred hhhhhhcCCCcccCCCCCCccchhhchhhhhhhHHHHHHHHHhCCCCCCcchHHHHHHhhCcHHHHHHHHHcCChhhHhc
Q 009571 396 GLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKHLDAPGHWLQEKHRRILMNKFCGRYLREKNLHRYMIY 475 (532)
Q Consensus 396 lL~~AltH~S~~~~~~~~~~~ERLEFLGDaVL~l~vs~~L~~~~p~~~eG~Lt~~rs~lV~~~~la~~a~~l~L~~~l~~ 475 (532)
+|.+||||+|+.... .+|||||||||+||++++++|+|++||+.++|.|+.+|+.+|+|++|+.+|+++||++|++.
T Consensus 2 ll~~alth~s~~~~~---~~~e~Le~lGd~vl~~~v~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~~l~~~i~~ 78 (129)
T smart00535 2 LLLRALTHASYSNEH---EHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLGLGEFIRL 78 (129)
T ss_pred HHHHHhhcccccccC---cchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHCHHHHHHHHHHCCcHHHHcc
Confidence 678899999974322 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhccccCCCchHHhHHHHHHHHHHhhCCchHHHHHHHHhcc
Q 009571 476 SEQVQDAYEHNRRLRNPSTTAVQQALHGLAYTVYGKPDVRRLMFEVFD 523 (532)
Q Consensus 476 g~~~~~~~~~~~~~~~~~l~d~~EAliGAiYLd~G~~~~~~~v~~~~~ 523 (532)
+.+..... ++.....++|+|||+|||||+|.|++.|++|+.+++.
T Consensus 79 ~~~~~~~~---~~~~~k~~a~~~eAliGAi~ld~g~~~~~~~i~~~~~ 123 (129)
T smart00535 79 GRGEAISG---GRDKPSILADVFEALIGAIYLDSGLEAAREFIRDLLG 123 (129)
T ss_pred CchHhhcC---CcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 87654322 4456778999999999999999999999999999986
No 17
>cd00593 RIBOc RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing.
Probab=99.95 E-value=2e-28 Score=220.28 Aligned_cols=125 Identities=27% Similarity=0.329 Sum_probs=111.1
Q ss_pred hhhhhhcCCCcccCCCCCCccchhhchhhhhhhHHHHHHHHHhCCCCCCcchHHHHHHhhCcHHHHHHHHHcCChhhHhc
Q 009571 396 GLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKHLDAPGHWLQEKHRRILMNKFCGRYLREKNLHRYMIY 475 (532)
Q Consensus 396 lL~~AltH~S~~~~~~~~~~~ERLEFLGDaVL~l~vs~~L~~~~p~~~eG~Lt~~rs~lV~~~~la~~a~~l~L~~~l~~ 475 (532)
|+.+||||+|+.... ...+|||||||||+||++++++|+|.+||+.++|.|+.+|+.+|||+.|+.+|.++||++|++.
T Consensus 2 ll~~alth~s~~~~~-~~~~~e~Le~lGdavl~~~~~~~l~~~~~~~~~~~l~~~~~~~v~n~~l~~~a~~~gl~~~i~~ 80 (133)
T cd00593 2 LLLEALTHPSYANEH-GRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLARELGLGKYLRL 80 (133)
T ss_pred HHHHhhcCccccccC-CCcchHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHCHHHHHHHHHHcCcHHHhcc
Confidence 778899999975432 2468999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhccccCCCchHHhHHHHHHHHHHhhCCchHHHHHHHHhccc
Q 009571 476 SEQVQDAYEHNRRLRNPSTTAVQQALHGLAYTVYGKPDVRRLMFEVFDF 524 (532)
Q Consensus 476 g~~~~~~~~~~~~~~~~~l~d~~EAliGAiYLd~G~~~~~~~v~~~~~~ 524 (532)
++...... +...+..++|+|||+|||||+|+|++.|++||.++|.+
T Consensus 81 ~~~~~~~~---~~~~~k~~ad~~eAliGAiyld~g~~~~~~~i~~~~~~ 126 (133)
T cd00593 81 GKGEEKSG---GRLRPKILADVFEALIGAIYLDGGFEAARKFLLRLLGP 126 (133)
T ss_pred CchHhhcC---CcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 87654321 34567799999999999999999999999999998743
No 18
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=99.95 E-value=2e-28 Score=287.94 Aligned_cols=348 Identities=18% Similarity=0.190 Sum_probs=228.1
Q ss_pred HHHHHHHHhC--CCCCCCCCCCCCCCCCChHHHHHHHHcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCC
Q 009571 135 YLLEAKQALG--YSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPR 212 (532)
Q Consensus 135 ~l~~le~~LG--Y~F~~~~~~~~~~p~~~~~~LL~~ALTH~S~~~~~~~~~~~~yERLEFLGDaVL~lvvs~~Ly~~yP~ 212 (532)
.++.++.++. |.|.+ .++.... ..++|++|||++++.. ..++||||+|||++|+++++.+||.+||+
T Consensus 980 ~~E~~e~i~n~~~~Fs~-~~~~i~~----~~s~LLEAlT~~~~~~------s~s~Erle~Lgds~Lk~avsr~l~L~ypd 1048 (1606)
T KOG0701|consen 980 DWEAVEKILNFRYVFSI-SLASIAL----STSLLLEALTTSSCQD------SFSLERLELLGDSLLKLAVSRHLFLTYPD 1048 (1606)
T ss_pred cccccccccccceeccc-ccccccc----chhHHHHHhhcCcccc------chhHHHHHhhHHHHHHHHHHHHHHHhCCc
Confidence 3567888888 99986 1111111 0289999999999974 38999999999999999999999999999
Q ss_pred CChhhHHHHHHHhhCcchHHHHHHHcCCCcccCCCc---h------h-----------------------hh--------
Q 009571 213 ESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFD---E------M-----------------------DR-------- 252 (532)
Q Consensus 213 ~~eG~Lt~lRs~lVsN~~La~iA~~lgL~~~I~~~~---~------~-----------------------~~-------- 252 (532)
.+||+++.+|+.+++|.+|+.+|+..||..|++.+. . . +.
T Consensus 1049 ~~Egqls~lr~~~~~~~nl~~la~~~gl~~~~~~~~fep~~~~~p~~~~~~~~~~k~~~~~~~~~~~~e~~e~~~df~e~ 1128 (1606)
T KOG0701|consen 1049 LDEGQLSRLRDVNVSNDNLARLAVKKGLYSYLRHEGFEPSRWWVPGQLDVNNVDCKDLSGDQNYILYKELDEKIKDFQEA 1128 (1606)
T ss_pred ccchhHHHHHHhcccccchhhhhhcccchhhcccccccccccccccccccccccccccccccccccccchhhhhhHHHHh
Confidence 999999999999999999999999999999998641 0 0 00
Q ss_pred ----------hc---ccCCCCchhhHHHHHHHHHHhhcChHHHH-----HHHHHHhCCCCCccccchh------------
Q 009571 253 ----------LI---RKEREPPVKSVFWALFGAIYLCFGFPEVY-----RVLFEVFGMDPEDKECQPK------------ 302 (532)
Q Consensus 253 ----------~~---~~~~~KvLADvfEALIGAIylD~G~~~a~-----~~i~~~~g~d~~~~~~~pk------------ 302 (532)
.+ ....+|+++|++||++||+|+|+|+.... .++ +|.+.+.+....+|+
T Consensus 1129 ~~~~~~~~~~~~~~~~~~~~ks~adl~eaLlga~~vD~~~~~~~~~~~~~~l-k~~~~~~dy~~~e~~~~~~~~~~~s~~ 1207 (1606)
T KOG0701|consen 1129 MEKEDGDSRSKGGDHDWLAPKSPADLLEALLGAIYVDGGLLETFETIGDSFL-KWSITNYDYDTLEPKHAGKLSFRRSKI 1207 (1606)
T ss_pred hhccCCcccccccccceecCCCHHHHHHHHHHhhhhhccchhhhhHHHHHHH-hhhhhhhhhhcccccchhhhhhhhhhH
Confidence 00 12358999999999999999999998766 555 366665543332221
Q ss_pred --------hhhhccc-------------cccccccccC----cccch-----------------------------hhcc
Q 009571 303 --------LRRQLED-------------VDYVSVEFEG----NKLTW-----------------------------QDVA 328 (532)
Q Consensus 303 --------l~~~led-------------id~vs~ef~g----~~l~w-----------------------------~~i~ 328 (532)
+-+++.- .-+-+.+-.| .+..| +.-+
T Consensus 1208 ~~~~~~~~ler~l~~~~~~~~~~l~~~~~~~~s~~~~~ld~~erl~~~~d~vld~l~~~~~~~~~~~~~~~~lt~~~~~~ 1287 (1606)
T KOG0701|consen 1208 VKKKNLDRLERELGLKFKFLEAALLVQAFIHCSLRAEGLDATERLEFLGDAVLDKLSDKHPFEVFIRLDGGELTDLREAG 1287 (1606)
T ss_pred hhhhhHHHHHHhhcccchhhhhhcchhhcccccccccccchHHHHHhhHHHHHHHHHHhhhHhhhhcccCcchhhhhhhh
Confidence 0000000 0000000000 00000 0000
Q ss_pred c---------------------------CCCchhhhhh-cchhhhccCCCCCcc-------------------ccCCccc
Q 009571 329 A---------------------------YKPPEDALFA-QPRLFRACVPPGMHR-------------------FRGNLWD 361 (532)
Q Consensus 329 ~---------------------------~~~p~dal~~-~p~l~~~c~p~~~~~-------------------f~~~~~~ 361 (532)
. -+...|.+.+ .......+.|.+... +..+.|.
T Consensus 1288 v~~l~e~~~~~~v~~~l~~~l~~~s~~~~K~i~d~v~sli~~~~~~~~~~s~l~~~~~~~~l~~i~es~~~~~~~~~~~~ 1367 (1606)
T KOG0701|consen 1288 VNTLNENDLNVKVPKSLPYNLLDQSSVLEKSIADSVEALIGASLSEGGPSSALLFMDWPPILLDIPESIASPDSIDELRQ 1367 (1606)
T ss_pred hhhhhhcccccccCCcceeeehhhccCccchHHHHHHHhhhhhhhccCCCccccccccccccccccccccccchhHHHHH
Confidence 0 0000000000 000011122221110 0011111
Q ss_pred CCChHHHHHHhCCCCccCCCchhhhhhhhhhhhhhhhhhhcCCCcccCCCCCCccchhhchhhhhhhHHHHHHHHHhCCC
Q 009571 362 FDSRPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKHLD 441 (532)
Q Consensus 362 ~~~~~~l~~~Lgy~f~~~~~~~~i~~~~n~~~~~lL~~AltH~S~~~~~~~~~~~ERLEFLGDaVL~l~vs~~L~~~~p~ 441 (532)
...+..+++.+||.|.. ..++.+|+||-||..+. ...||||||||||+|+++.|++++|..++.
T Consensus 1368 l~~~~~~e~~l~y~f~~---------------~~~l~~a~th~s~~~~~-~~~C~qrleflgd~vld~~it~hl~~~~~~ 1431 (1606)
T KOG0701|consen 1368 LLSFGKFEEKLNYRFKL---------------KPYLTQATTHASYIYNR-ITDCYQRLEFLGDAVLDYLITKHLYEDPRQ 1431 (1606)
T ss_pred HHHHHhhhcccchhhhh---------------hhcccccccccccccCc-cchhhhhHHHhHHhhhhhhhhhcccccccc
Confidence 22233445555555542 23777899999975543 456999999999999999999999999999
Q ss_pred CCCcchHHHHHHhhCcHHHHHHHHHcCChhhHhcchh-----hhhhhh---ccc----------cCCCchHHhHHHHHHH
Q 009571 442 APGHWLQEKHRRILMNKFCGRYLREKNLHRYMIYSEQ-----VQDAYE---HNR----------RLRNPSTTAVQQALHG 503 (532)
Q Consensus 442 ~~eG~Lt~~rs~lV~~~~la~~a~~l~L~~~l~~g~~-----~~~~~~---~~~----------~~~~~~l~d~~EAliG 503 (532)
.++|-+|.+|+++|+|...|.+|.+.++++|++.-+. ..+... .++ -.-+++++|++|++.|
T Consensus 1432 ~sp~~~td~rsa~vnn~~~a~~av~~~~~K~~~~~~~~l~~~I~~~v~~~~q~~~~~~~~~~edievpKa~gdi~esiag 1511 (1606)
T KOG0701|consen 1432 HSPGVLTDLRSALVNNTIFASLAVKADLHKFIIAASPGLIHNIDRFVSFQLQSNLDSLFGWEEDIEVPKALGDIFESIAG 1511 (1606)
T ss_pred cCchhhhhhhhHhhccccchhhHHhhcchhHHHhhccccccchHHHHHHHHhhccccCCCchhhcccchhhhhhhhcccc
Confidence 9999999999999999999999999999999984211 111000 001 1234678999999999
Q ss_pred HHHhhCC
Q 009571 504 LAYTVYG 510 (532)
Q Consensus 504 AiYLd~G 510 (532)
|||+|.|
T Consensus 1512 ai~~dsg 1518 (1606)
T KOG0701|consen 1512 AIKLDSG 1518 (1606)
T ss_pred eeecCcc
Confidence 9999999
No 19
>smart00535 RIBOc Ribonuclease III family.
Probab=99.95 E-value=1.7e-27 Score=213.85 Aligned_cols=122 Identities=27% Similarity=0.379 Sum_probs=111.7
Q ss_pred HHHHHHcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHhhCcchHHHHHHHcCCCccc
Q 009571 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLI 244 (532)
Q Consensus 165 LL~~ALTH~S~~~~~~~~~~~~yERLEFLGDaVL~lvvs~~Ly~~yP~~~eG~Lt~lRs~lVsN~~La~iA~~lgL~~~I 244 (532)
+|.+|||||||... ..+|||||||||+||+++++.++|.+||+.++|.|+.+|+.+|||++|+.+|+++||++++
T Consensus 2 ll~~alth~s~~~~-----~~~~e~Le~lGd~vl~~~v~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~~l~~~i 76 (129)
T smart00535 2 LLLRALTHASYSNE-----HEHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLGLGEFI 76 (129)
T ss_pred HHHHHhhccccccc-----CcchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHCHHHHHHHHHHCCcHHHH
Confidence 68999999999753 2699999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhcccCCCCchhhHHHHHHHHHHhhcChHHHHHHHHHHhC
Q 009571 245 FPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFG 291 (532)
Q Consensus 245 ~~~~~~~~~~~~~~~KvLADvfEALIGAIylD~G~~~a~~~i~~~~g 291 (532)
++++......+...+|++||+|||+|||||+|.|++.|.+|+.+++.
T Consensus 77 ~~~~~~~~~~~~~~~k~~a~~~eAliGAi~ld~g~~~~~~~i~~~~~ 123 (129)
T smart00535 77 RLGRGEAISGGRDKPSILADVFEALIGAIYLDSGLEAAREFIRDLLG 123 (129)
T ss_pred ccCchHhhcCCcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99876543334467899999999999999999999999999999884
No 20
>cd00593 RIBOc RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing.
Probab=99.94 E-value=1.4e-26 Score=208.23 Aligned_cols=124 Identities=28% Similarity=0.417 Sum_probs=112.3
Q ss_pred HHHHHHcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHhhCcchHHHHHHHcCCCccc
Q 009571 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLI 244 (532)
Q Consensus 165 LL~~ALTH~S~~~~~~~~~~~~yERLEFLGDaVL~lvvs~~Ly~~yP~~~eG~Lt~lRs~lVsN~~La~iA~~lgL~~~I 244 (532)
|+.+||||+|+.... ...+|||||||||+||+++++++++..||+.++|.++.+|+.+|||++|+.+|.++||++++
T Consensus 2 ll~~alth~s~~~~~---~~~~~e~Le~lGdavl~~~~~~~l~~~~~~~~~~~l~~~~~~~v~n~~l~~~a~~~gl~~~i 78 (133)
T cd00593 2 LLLEALTHPSYANEH---GRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLARELGLGKYL 78 (133)
T ss_pred HHHHhhcCccccccC---CCcchHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHCHHHHHHHHHHcCcHHHh
Confidence 689999999997641 24799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhcccCCCCchhhHHHHHHHHHHhhcChHHHHHHHHHHhC
Q 009571 245 FPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFG 291 (532)
Q Consensus 245 ~~~~~~~~~~~~~~~KvLADvfEALIGAIylD~G~~~a~~~i~~~~g 291 (532)
+.++..........+|++||+|||+|||||+|+|.+.|.+|+.+++.
T Consensus 79 ~~~~~~~~~~~~~~~k~~ad~~eAliGAiyld~g~~~~~~~i~~~~~ 125 (133)
T cd00593 79 RLGKGEEKSGGRLRPKILADVFEALIGAIYLDGGFEAARKFLLRLLG 125 (133)
T ss_pred ccCchHhhcCCcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99876543334467999999999999999999999999999998763
No 21
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=99.91 E-value=1.3e-24 Score=225.62 Aligned_cols=175 Identities=17% Similarity=0.204 Sum_probs=137.9
Q ss_pred chHHHHHHhcCcccccccccccccCCCCCccCCCChhhHHHHHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHHcCC
Q 009571 94 DKKLVDRFLKSPQLSLKSFPLLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHP 173 (532)
Q Consensus 94 ~~~l~~~~~~sp~~~l~~~~~~~s~lp~~~~~~~d~~~~~~~l~~le~~LGY~F~~~~~~~~~~p~~~~~~LL~~ALTH~ 173 (532)
++.+.+.|.+.|++.++-- -|.......+....-..+.+.++++|..|.+ .+++.+|||-+
T Consensus 239 epvlee~w~~~~ehelq~~------ep~gDr~~~~~~Ppllp~~~~e~~~g~vF~H-------------irlla~aft~r 299 (533)
T KOG1817|consen 239 EPVLEEEWEHEPEHELQEQ------EPAGDRVLITKYPPLLPLTQFEEIIGIVFIH-------------IRLLARAFTLR 299 (533)
T ss_pred CchhhccccCCCcCccccc------CCCccccccccCCCCCchhhHHHHHHHHHHH-------------HHHHHHHhhcc
Confidence 5556677777788877621 1111100000000001235689999999997 89999999999
Q ss_pred CccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHhhCcchHHHHHHHcCCCcccCCCchhhhh
Q 009571 174 FCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRL 253 (532)
Q Consensus 174 S~~~~~~~~~~~~yERLEFLGDaVL~lvvs~~Ly~~yP~~~eG~Lt~lRs~lVsN~~La~iA~~lgL~~~I~~~~~~~~~ 253 (532)
|..... -...+|||||||||+||.+++|+++|.+||+.+||.||.+|+.+|||++.+.||..+|++++++.+.....
T Consensus 300 s~~~n~--Lt~gHNqRLEFLGDSilqlv~T~ily~kFPdhhEGhLSlLRssLVsNetqakva~~lgf~e~li~n~~~k~- 376 (533)
T KOG1817|consen 300 SIPFNH--LTLGHNQRLEFLGDSILQLVMTEILYRKFPDHHEGHLSLLRSSLVSNETQAKVADDLGFHEYLITNFDLKD- 376 (533)
T ss_pred CCCchh--hhhhhhHHHHHhHHHHHHHHHHHHHHHhCCccccchHHHHHHHHhccHHHHHHHHHhCCchhhhhCcchhh-
Confidence 976322 24579999999999999999999999999999999999999999999999999999999999998764322
Q ss_pred cccCCCCchhhHHHHHHHHHHhhcChHHHHHHHHHHh
Q 009571 254 IRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF 290 (532)
Q Consensus 254 ~~~~~~KvLADvfEALIGAIylD~G~~~a~~~i~~~~ 290 (532)
....+.|.+||+|||+|||+|+|.|.+.|+.|+...+
T Consensus 377 ~~~lk~K~~ADlfEAfiGaLyvD~~le~~~qf~~~l~ 413 (533)
T KOG1817|consen 377 FQNLKLKDYADLFEAFIGALYVDKGLEYCRQFLRVLF 413 (533)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHh
Confidence 2234579999999999999999999999999998876
No 22
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3.1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A ....
Probab=99.89 E-value=4.7e-24 Score=188.03 Aligned_cols=94 Identities=27% Similarity=0.341 Sum_probs=79.1
Q ss_pred chhhchhhhhhhHHHHHHHHHhCCCCCCcchHHHHHHhhCcHHHHHHHHHcCChhhHhcchhhhhhhh-c----------
Q 009571 417 ERLEYVGQKIQDLVMAERLLMKHLDAPGHWLQEKHRRILMNKFCGRYLREKNLHRYMIYSEQVQDAYE-H---------- 485 (532)
Q Consensus 417 ERLEFLGDaVL~l~vs~~L~~~~p~~~eG~Lt~~rs~lV~~~~la~~a~~l~L~~~l~~g~~~~~~~~-~---------- 485 (532)
|||||||||||+++|++|||.+||+.+||.||.+|+.+|||++|+.+|.++||++||+.......... .
T Consensus 1 ErLefLGDavL~~~v~~~l~~~~p~~~~~~L~~~r~~~vsn~~L~~~a~~~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (114)
T PF00636_consen 1 ERLEFLGDAVLKLLVSEYLFEKYPNLNEGQLTKLRSALVSNKFLARLAVKLGLHKYLRQEPFEIQRWIKPFNEDLNNGDS 80 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHSHHHHHHHHHHTTHGCTCBHHHHHHHHHHHCHHCC------
T ss_pred CcHhHhHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHHHhCchHhhhccchhHHHHHHHHHHHHHhccc
Confidence 89999999999999999999999999999999999999999999999999999999985432211000 0
Q ss_pred ---------cccCCCchHHhHHHHHHHHHHhhCC
Q 009571 486 ---------NRRLRNPSTTAVQQALHGLAYTVYG 510 (532)
Q Consensus 486 ---------~~~~~~~~l~d~~EAliGAiYLd~G 510 (532)
.....+..++|+|||+|||||+|+|
T Consensus 81 ~~~~~~~~~~~~~~~k~laD~~EAliGAiyld~G 114 (114)
T PF00636_consen 81 ESSISYDPKNQVLPPKVLADVFEALIGAIYLDSG 114 (114)
T ss_dssp -C-SSS--SSSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCCccccCCccHHHHHHHHHHHHHHHHhcC
Confidence 0111246789999999999999998
No 23
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3.1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A ....
Probab=99.87 E-value=7.1e-23 Score=180.52 Aligned_cols=91 Identities=26% Similarity=0.343 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHhhCcchHHHHHHHcCCCcccCCCchhhh----h----------
Q 009571 188 SRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDR----L---------- 253 (532)
Q Consensus 188 ERLEFLGDaVL~lvvs~~Ly~~yP~~~eG~Lt~lRs~lVsN~~La~iA~~lgL~~~I~~~~~~~~----~---------- 253 (532)
||||||||+||+++|+.++|.+||+.++|.||.+|+.+|||++|+.+|.++||++|++..+.... .
T Consensus 1 ErLefLGDavL~~~v~~~l~~~~p~~~~~~L~~~r~~~vsn~~L~~~a~~~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (114)
T PF00636_consen 1 ERLEFLGDAVLKLLVSEYLFEKYPNLNEGQLTKLRSALVSNKFLARLAVKLGLHKYLRQEPFEIQRWIKPFNEDLNNGDS 80 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHSHHHHHHHHHHTTHGCTCBHHHHHHHHHHHCHHCC------
T ss_pred CcHhHhHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHHHhCchHhhhccchhHHHHHHHHHHHHHhccc
Confidence 89999999999999999999999999999999999999999999999999999999985321110 0
Q ss_pred ---------cccCCCCchhhHHHHHHHHHHhhcC
Q 009571 254 ---------IRKEREPPVKSVFWALFGAIYLCFG 278 (532)
Q Consensus 254 ---------~~~~~~KvLADvfEALIGAIylD~G 278 (532)
.....+|++||+|||+|||+|+|+|
T Consensus 81 ~~~~~~~~~~~~~~~k~laD~~EAliGAiyld~G 114 (114)
T PF00636_consen 81 ESSISYDPKNQVLPPKVLADVFEALIGAIYLDSG 114 (114)
T ss_dssp -C-SSS--SSSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCCccccCCccHHHHHHHHHHHHHHHHhcC
Confidence 0112479999999999999999998
No 24
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=99.36 E-value=9.6e-13 Score=156.75 Aligned_cols=132 Identities=21% Similarity=0.237 Sum_probs=103.6
Q ss_pred hhhhhhhcCCCcccCCCCCCccchhhchhhhhhhHHHHHHHHHhCCCCCCcchHHHHHHhhCcHHHHHHHHHcCChhhHh
Q 009571 395 LGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKHLDAPGHWLQEKHRRILMNKFCGRYLREKNLHRYMI 474 (532)
Q Consensus 395 ~lL~~AltH~S~~~~~~~~~~~ERLEFLGDaVL~l~vs~~L~~~~p~~~eG~Lt~~rs~lV~~~~la~~a~~l~L~~~l~ 474 (532)
.+|.+||||.++. ...++||||+|||++|.+.|+.+||.+||+..||+||++|+.+|++..++.+|...||..|++
T Consensus 1006 s~LLEAlT~~~~~----~s~s~Erle~Lgds~Lk~avsr~l~L~ypd~~Egqls~lr~~~~~~~nl~~la~~~gl~~~~~ 1081 (1606)
T KOG0701|consen 1006 SLLLEALTTSSCQ----DSFSLERLELLGDSLLKLAVSRHLFLTYPDLDEGQLSRLRDVNVSNDNLARLAVKKGLYSYLR 1081 (1606)
T ss_pred hHHHHHhhcCccc----cchhHHHHHhhHHHHHHHHHHHHHHHhCCcccchhHHHHHHhcccccchhhhhhcccchhhcc
Confidence 5888899999975 246899999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhhhh------------------------------------hhh----cccc----------CCCchHHhHHHHHHHH
Q 009571 475 YSEQVQD------------------------------------AYE----HNRR----------LRNPSTTAVQQALHGL 504 (532)
Q Consensus 475 ~g~~~~~------------------------------------~~~----~~~~----------~~~~~l~d~~EAliGA 504 (532)
.+.-+-. ..+ ..+. .-...++|++|||+||
T Consensus 1082 ~~~fep~~~~~p~~~~~~~~~~k~~~~~~~~~~~~e~~e~~~df~e~~~~~~~~~~~~~~~~~~~~~ks~adl~eaLlga 1161 (1606)
T KOG0701|consen 1082 HEGFEPSRWWVPGQLDVNNVDCKDLSGDQNYILYKELDEKIKDFQEAMEKEDGDSRSKGGDHDWLAPKSPADLLEALLGA 1161 (1606)
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhhHHHHhhhccCCcccccccccceecCCCHHHHHHHHHHh
Confidence 7611000 000 0011 1235679999999999
Q ss_pred HHhhCCchHHH-----HHHHHh---ccccccCCC
Q 009571 505 AYTVYGKPDVR-----RLMFEV---FDFEQIQPK 530 (532)
Q Consensus 505 iYLd~G~~~~~-----~~v~~~---~~~~~~~~~ 530 (532)
+|.|+|+.... .|+.-. ++++..||+
T Consensus 1162 ~~vD~~~~~~~~~~~~~~lk~~~~~~dy~~~e~~ 1195 (1606)
T KOG0701|consen 1162 IYVDGGLLETFETIGDSFLKWSITNYDYDTLEPK 1195 (1606)
T ss_pred hhhhccchhhhhHHHHHHHhhhhhhhhhhccccc
Confidence 99999998777 444311 156666654
No 25
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=3.9e-08 Score=99.71 Aligned_cols=141 Identities=17% Similarity=0.185 Sum_probs=117.2
Q ss_pred HHHHHHHHhC-CCCCCCCCCCCCCCCCChHHHHHHHHcCCCcccccc-------------ccCCCCchHHHHHHHHHHHH
Q 009571 135 YLLEAKQALG-YSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKA-------------RHVRAGHSRLCFLGQFVLEL 200 (532)
Q Consensus 135 ~l~~le~~LG-Y~F~~~~~~~~~~p~~~~~~LL~~ALTH~S~~~~~~-------------~~~~~~yERLEFLGDaVL~l 200 (532)
.+..+.++|| -.|. .+.+..|||.+|+....+ .....+|+-|--.|..++.+
T Consensus 64 el~afg~RL~~~~is--------------~~~l~ka~t~~s~~~~~kv~~~~lg~~~~~~~~~~~~N~~L~~~Gk~~~~~ 129 (333)
T KOG3769|consen 64 ELSAFGKRLQSEEIS--------------LSYLLKALTNLSFSYPEKVLRQQLGAETVAQVNPQYSNEELVEIGKQFLSF 129 (333)
T ss_pred HHHHHHHHhcccccc--------------HHHHHHHHhCccccchHHHhhhhhcchhhhhhcCCcchHHHHHHHHHHHHH
Confidence 4678899999 5555 688999999999975211 03467999999999999999
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHhhCcchHHHHHHHcCCCcccCCCchhhhhcccCCCCchhhHHHHHHHHHHhhcChH
Q 009571 201 AFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFP 280 (532)
Q Consensus 201 vvs~~Ly~~yP~~~eG~Lt~lRs~lVsN~~La~iA~~lgL~~~I~~~~~~~~~~~~~~~KvLADvfEALIGAIylD~G~~ 280 (532)
.|+.||-++||++++..+..+-+.+++.+.|+.+|..+|++++++...-.. .+.....+...+++=|++|+++...|+.
T Consensus 130 ~v~~~l~~kyPrlP~E~l~ai~n~ll~ee~LahiAt~lGie~l~~seeFp~-~~eisq~ess~~aI~Al~~~~~~ek~~~ 208 (333)
T KOG3769|consen 130 YVTEYLKCKYPRLPEEGLHAIVNGLLGEEVLAHIATHLGIEELGLSEEFPK-VGEISQDESSRRAIGALLGSVGLEKGFN 208 (333)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHhhhHHHHHHHHHHhhHHHHhhcccCCC-chhhhHHHHHHHHHHHHHhcccHHHHHH
Confidence 999999999999999999999999999999999999999999888654221 1111234678899999999999999999
Q ss_pred HHHHHHHHHh
Q 009571 281 EVYRVLFEVF 290 (532)
Q Consensus 281 ~a~~~i~~~~ 290 (532)
.+++||.+.+
T Consensus 209 ~v~dFI~~qi 218 (333)
T KOG3769|consen 209 FVRDFINDQI 218 (333)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 26
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=2.6e-06 Score=86.63 Aligned_cols=125 Identities=17% Similarity=0.079 Sum_probs=101.2
Q ss_pred hhhhhhhcCCCcccCC---------------CCCCccchhhchhhhhhhHHHHHHHHHhCCCCCCcchHHHHHHhhCcHH
Q 009571 395 LGLQLCFLHPSKYKFE---------------HPRFCFERLEYVGQKIQDLVMAERLLMKHLDAPGHWLQEKHRRILMNKF 459 (532)
Q Consensus 395 ~lL~~AltH~S~~~~~---------------~~~~~~ERLEFLGDaVL~l~vs~~L~~~~p~~~eG~Lt~~rs~lV~~~~ 459 (532)
..|..|||-+|+...+ .+..+|+-|-=.|-..+++.|.+||-++||++++--+..+-+.+.+++.
T Consensus 80 ~~l~ka~t~~s~~~~~kv~~~~lg~~~~~~~~~~~~N~~L~~~Gk~~~~~~v~~~l~~kyPrlP~E~l~ai~n~ll~ee~ 159 (333)
T KOG3769|consen 80 SYLLKALTNLSFSYPEKVLRQQLGAETVAQVNPQYSNEELVEIGKQFLSFYVTEYLKCKYPRLPEEGLHAIVNGLLGEEV 159 (333)
T ss_pred HHHHHHHhCccccchHHHhhhhhcchhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHhhhHHH
Confidence 3777899999964321 1235799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChhhHhcchhhhhhhhccccCCCchHHhHHHHHHHHHHhhCCchHHHHHHHHhcc
Q 009571 460 CGRYLREKNLHRYMIYSEQVQDAYEHNRRLRNPSTTAVQQALHGLAYTVYGKPDVRRLMFEVFD 523 (532)
Q Consensus 460 la~~a~~l~L~~~l~~g~~~~~~~~~~~~~~~~~l~d~~EAliGAiYLd~G~~~~~~~v~~~~~ 523 (532)
||.||+-+|+.++++.-.= ...+ .-.......+++=|++|++++..|+..|++||...+.
T Consensus 160 LahiAt~lGie~l~~seeF-p~~~---eisq~ess~~aI~Al~~~~~~ek~~~~v~dFI~~qi~ 219 (333)
T KOG3769|consen 160 LAHIATHLGIEELGLSEEF-PKVG---EISQDESSRRAIGALLGSVGLEKGFNFVRDFINDQIL 219 (333)
T ss_pred HHHHHHHhhHHHHhhcccC-CCch---hhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh
Confidence 9999999999988765321 1111 0111234568999999999999999999999998873
No 27
>COG1939 Ribonuclease III family protein [Replication, recombination, and repair]
Probab=97.97 E-value=1.8e-05 Score=71.74 Aligned_cols=101 Identities=20% Similarity=0.275 Sum_probs=73.4
Q ss_pred hhhchhhhhhhHHHHHHHHHhCCCCCCcchHHHHHHhhCcHHHHHHHHHcCChhhHhcchhhhhhhhccccC-------C
Q 009571 418 RLEYVGQKIQDLVMAERLLMKHLDAPGHWLQEKHRRILMNKFCGRYLREKNLHRYMIYSEQVQDAYEHNRRL-------R 490 (532)
Q Consensus 418 RLEFLGDaVL~l~vs~~L~~~~p~~~eG~Lt~~rs~lV~~~~la~~a~~l~L~~~l~~g~~~~~~~~~~~~~-------~ 490 (532)
=|-|+||||+++.|=.|+...+-. .++.|.+.-.+-||.+.-|.+.+.+- + .+.+.|..-+.+ ||. +
T Consensus 17 aLAy~GDAV~e~yVR~~~l~~g~~-k~~~lH~~a~~~VsAk~QA~il~~~~--~--~Lte~E~~I~KR-gRNaks~T~~k 90 (132)
T COG1939 17 ALAYLGDAVYELYVREYLLLKGKT-KPNDLHKRATAYVSAKAQALILKALL--E--FLTEEEEEIVKR-GRNAKSGTKPK 90 (132)
T ss_pred HHHHhhhHHHHHHHHHHHHhcccC-ChHHHHHHHHHHhhHHHHHHHHHHHH--H--HhhHHHHHHHHH-hcccccCCCCC
Confidence 588999999999999999887544 89999999999999999998877642 1 233333322211 221 1
Q ss_pred Cc-----hHHhHHHHHHHHHHhhCCchHHHHHHHHhccc
Q 009571 491 NP-----STTAVQQALHGLAYTVYGKPDVRRLMFEVFDF 524 (532)
Q Consensus 491 ~~-----~l~d~~EAliGAiYLd~G~~~~~~~v~~~~~~ 524 (532)
+. -.+-.|||+||.+||-.-.|....++..+...
T Consensus 91 n~dv~tYr~sTgfEAliGyLyL~~~~eRL~ell~~~i~~ 129 (132)
T COG1939 91 NTDVETYRMSTGFEALIGYLYLTKQEERLEELLNKVIEI 129 (132)
T ss_pred CCChHHHHHhhhHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 11 12568999999999998888888888776643
No 28
>COG1939 Ribonuclease III family protein [Replication, recombination, and repair]
Probab=97.31 E-value=0.00088 Score=60.90 Aligned_cols=97 Identities=21% Similarity=0.253 Sum_probs=69.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHhhCcchHHHHHHHcCCCcccC--------CCchhhhhcccCC
Q 009571 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIF--------PFDEMDRLIRKER 258 (532)
Q Consensus 187 yERLEFLGDaVL~lvvs~~Ly~~yP~~~eG~Lt~lRs~lVsN~~La~iA~~lgL~~~I~--------~~~~~~~~~~~~~ 258 (532)
==-|+|+||||+++.|-.|+...+- -.+..|++.-.+.||.+.-+.+-..+- +++. .+.+ ......
T Consensus 15 ~laLAy~GDAV~e~yVR~~~l~~g~-~k~~~lH~~a~~~VsAk~QA~il~~~~--~~Lte~E~~I~KRgRN---aks~T~ 88 (132)
T COG1939 15 GLALAYLGDAVYELYVREYLLLKGK-TKPNDLHKRATAYVSAKAQALILKALL--EFLTEEEEEIVKRGRN---AKSGTK 88 (132)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhccc-CChHHHHHHHHHHhhHHHHHHHHHHHH--HHhhHHHHHHHHHhcc---cccCCC
Confidence 3469999999999999999887643 379999999999999998887765531 1221 1111 001112
Q ss_pred CC-------chhhHHHHHHHHHHhhcChHHHHHHHHHH
Q 009571 259 EP-------PVKSVFWALFGAIYLCFGFPEVYRVLFEV 289 (532)
Q Consensus 259 ~K-------vLADvfEALIGAIylD~G~~~a~~~i~~~ 289 (532)
+| -.+.-|||+||.+|+..-.+....++...
T Consensus 89 ~kn~dv~tYr~sTgfEAliGyLyL~~~~eRL~ell~~~ 126 (132)
T COG1939 89 PKNTDVETYRMSTGFEALIGYLYLTKQEERLEELLNKV 126 (132)
T ss_pred CCCCChHHHHHhhhHHHHHHHHHHcccHHHHHHHHHHH
Confidence 22 46788999999999999988777766544
No 29
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=79.88 E-value=10 Score=33.80 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHH--hhCCCCChhhHHHHHHHhhCcchHHHHHHHcCCCcccCCCchhhhhcccCCCCchhhHH
Q 009571 189 RLCFLGQFVLELAFCEFFL--QRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVF 266 (532)
Q Consensus 189 RLEFLGDaVL~lvvs~~Ly--~~yP~~~eG~Lt~lRs~lVsN~~La~iA~~lgL~~~I~~~~~~~~~~~~~~~KvLADvf 266 (532)
-|.-+||++++++.+--|- --+|.- .-|-|.+|+..-...||...+.+..+ ...-+|..
T Consensus 2 ~Lak~GDSLvNfl~SlALse~lG~Ptg----------~rVPnaSLaiAl~~a~L~~~~~PR~d---------kh~kGd~a 62 (120)
T PF11469_consen 2 GLAKFGDSLVNFLFSLALSEYLGRPTG----------DRVPNASLAIALELAGLSHLLPPRTD---------KHGKGDIA 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS-----------------HHHHHHHHHHTTGGGCS--CGG---------CCGHHHHH
T ss_pred cHHHHhHHHHHHHHHHHHHHHhCCCCC----------CCCCChHHHHHHHHHhhhhhCccccc---------ccCccHHH
Confidence 3778999999999888774 345642 24678888888888888888764321 34578999
Q ss_pred HHHHHHHHhhcCh--HHHHHHHHHHh
Q 009571 267 WALFGAIYLCFGF--PEVYRVLFEVF 290 (532)
Q Consensus 267 EALIGAIylD~G~--~~a~~~i~~~~ 290 (532)
||+|+=.|+.+-+ +++.+++.+.+
T Consensus 63 EA~iAyAWLeg~it~eEaveil~~nl 88 (120)
T PF11469_consen 63 EALIAYAWLEGKITIEEAVEILKANL 88 (120)
T ss_dssp HHHHHHHHHTTSS-HHHHHHHHHCT-
T ss_pred HHHHHHHHHhccccHHHHHHHHHhcC
Confidence 9999999998854 46666665444
No 30
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=75.39 E-value=16 Score=32.57 Aligned_cols=86 Identities=9% Similarity=0.033 Sum_probs=54.9
Q ss_pred hchhhhhhhHHHHHHHHH--hCCCCCCcchHHHHHHhhCcHHHHHHHHHcCChhhHhcchhhhhhhhccccCCCchHHhH
Q 009571 420 EYVGQKIQDLVMAERLLM--KHLDAPGHWLQEKHRRILMNKFCGRYLREKNLHRYMIYSEQVQDAYEHNRRLRNPSTTAV 497 (532)
Q Consensus 420 EFLGDaVL~l~vs~~L~~--~~p~~~eG~Lt~~rs~lV~~~~la~~a~~l~L~~~l~~g~~~~~~~~~~~~~~~~~l~d~ 497 (532)
-=+||+..+++.|--|-+ -+|. | -=|-|.+|+.....-||.+.+.-- ...-.-+|+
T Consensus 4 ak~GDSLvNfl~SlALse~lG~Pt---g-------~rVPnaSLaiAl~~a~L~~~~~PR------------~dkh~kGd~ 61 (120)
T PF11469_consen 4 AKFGDSLVNFLFSLALSEYLGRPT---G-------DRVPNASLAIALELAGLSHLLPPR------------TDKHGKGDI 61 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS-----------------HHHHHHHHHHTTGGGCS--C------------GGCCGHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHhCCCC---C-------CCCCChHHHHHHHHHhhhhhCccc------------ccccCccHH
Confidence 347999999998877643 3343 2 248889999888888887765311 112234799
Q ss_pred HHHHHHHHHhhCCc--hHHHHHHHHhcccccc
Q 009571 498 QQALHGLAYTVYGK--PDVRRLMFEVFDFEQI 527 (532)
Q Consensus 498 ~EAliGAiYLd~G~--~~~~~~v~~~~~~~~~ 527 (532)
.||+|+--+|.+-+ +.+-+++..-|..+-+
T Consensus 62 aEA~iAyAWLeg~it~eEaveil~~nl~~dv~ 93 (120)
T PF11469_consen 62 AEALIAYAWLEGKITIEEAVEILKANLTEDVL 93 (120)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHHCT--GGGG
T ss_pred HHHHHHHHHHhccccHHHHHHHHHhcCchhhc
Confidence 99999999998764 6777788777754433
No 31
>PRK02287 hypothetical protein; Provisional
Probab=28.45 E-value=58 Score=31.57 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHhhCCchHHHHHHHHh
Q 009571 496 AVQQALHGLAYTVYGKPDVRRLMFEV 521 (532)
Q Consensus 496 d~~EAliGAiYLd~G~~~~~~~v~~~ 521 (532)
..+||+++|+|+-+..+.|.+++..+
T Consensus 108 s~vEAlAaaLyI~G~~~~A~~ll~~F 133 (171)
T PRK02287 108 SSVEALAAALYILGFKEEAEKILSKF 133 (171)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhhC
Confidence 46799999999998889999887654
No 32
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=27.12 E-value=41 Score=27.68 Aligned_cols=44 Identities=9% Similarity=0.072 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCCCCCcchHH-HHHHhhCcHHHHHHHHHcCChhhH
Q 009571 430 VMAERLLMKHLDAPGHWLQE-KHRRILMNKFCGRYLREKNLHRYM 473 (532)
Q Consensus 430 ~vs~~L~~~~p~~~eG~Lt~-~rs~lV~~~~la~~a~~l~L~~~l 473 (532)
-|++|+..+..+...-.+++ .+..-|+..++.+.+++||+..|-
T Consensus 20 ~Ia~yil~~~~~~~~~si~elA~~~~vS~sti~Rf~kkLG~~gf~ 64 (77)
T PF01418_consen 20 KIADYILENPDEIAFMSISELAEKAGVSPSTIVRFCKKLGFSGFK 64 (77)
T ss_dssp HHHHHHHH-HHHHCT--HHHHHHHCTS-HHHHHHHHHHCTTTCHH
T ss_pred HHHHHHHhCHHHHHHccHHHHHHHcCCCHHHHHHHHHHhCCCCHH
Confidence 36667666543333333333 346789999999999999998884
No 33
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=25.54 E-value=28 Score=25.01 Aligned_cols=10 Identities=30% Similarity=0.259 Sum_probs=8.3
Q ss_pred HhHHHHHHHH
Q 009571 495 TAVQQALHGL 504 (532)
Q Consensus 495 ~d~~EAliGA 504 (532)
.|++|||||+
T Consensus 26 EDAvEaLi~~ 35 (35)
T PF08383_consen 26 EDAVEALIGN 35 (35)
T ss_pred HHHHHHHhcC
Confidence 5899999984
No 34
>PRK02287 hypothetical protein; Provisional
Probab=24.03 E-value=77 Score=30.74 Aligned_cols=26 Identities=27% Similarity=0.115 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHhhcChHHHHHHHHH
Q 009571 263 KSVFWALFGAIYLCFGFPEVYRVLFE 288 (532)
Q Consensus 263 ADvfEALIGAIylD~G~~~a~~~i~~ 288 (532)
=.++||+.+|+|+-+.-+.|...+..
T Consensus 107 Ls~vEAlAaaLyI~G~~~~A~~ll~~ 132 (171)
T PRK02287 107 LSSVEALAAALYILGFKEEAEKILSK 132 (171)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 35899999999999998888887654
No 35
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=23.27 E-value=76 Score=30.78 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHhhCCchHHHHHHHHh
Q 009571 496 AVQQALHGLAYTVYGKPDVRRLMFEV 521 (532)
Q Consensus 496 d~~EAliGAiYLd~G~~~~~~~v~~~ 521 (532)
...||++||+|+-+=.+.|+.++..+
T Consensus 116 ss~EAlaAaLYI~G~~deA~~lls~F 141 (179)
T COG2042 116 SSAEALAAALYIVGFKDEASELLSKF 141 (179)
T ss_pred chHHHHHHHHHHhCcHHHHHHHHhhC
Confidence 46799999999997778999888654
No 36
>KOG1903 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=23.08 E-value=57 Score=31.47 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.5
Q ss_pred HHHHHHhhhhcCCCCCCCCCccee
Q 009571 64 LLKELAERKKVTSPKKKVPPKKFI 87 (532)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~ 87 (532)
.+++.+..+|+++||||.+|+.-.
T Consensus 5 ~~~q~fnK~KTFRPkkkF~~GT~R 28 (217)
T KOG1903|consen 5 CLKQVFNKDKTFRPKKKFEPGTQR 28 (217)
T ss_pred HHHHHHccCCccCCCCCCCCCcee
Confidence 688999999999999999998654
No 37
>TIGR03412 iscX_yfhJ FeS assembly protein IscX. Members of this protein family are YfhJ, a protein of the ISC system for iron-sulfur cluster assembly. Other genes in the system include iscSUA, hscBA, and fdx.
Probab=23.05 E-value=95 Score=25.32 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=20.9
Q ss_pred HHHHHHHHhCCCCCCcch--HHHHHHh
Q 009571 430 VMAERLLMKHLDAPGHWL--QEKHRRI 454 (532)
Q Consensus 430 ~vs~~L~~~~p~~~eG~L--t~~rs~l 454 (532)
-||+-|+.+||+.+|-.+ |++|..+
T Consensus 7 eIA~~L~e~~pd~dp~~vrFtdL~~wV 33 (63)
T TIGR03412 7 EIAIALAEAHPDVDPKTVRFTDLHQWV 33 (63)
T ss_pred HHHHHHHHHCCCCCcceeeHHHHHHHH
Confidence 478999999999999887 7777654
Done!