Query 009571
Match_columns 532
No_of_seqs 454 out of 2507
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 08:11:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009571.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009571hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qvw_A GLP_546_48378_50642; di 100.0 2.4E-57 8.1E-62 511.4 18.5 316 185-525 332-751 (756)
2 3o2r_A Ribonuclease III; struc 100.0 1.3E-37 4.3E-42 294.0 12.0 139 364-524 27-165 (170)
3 3n3w_A Ribonuclease III; nucle 100.0 1.3E-35 4.6E-40 295.6 13.0 138 364-523 27-164 (248)
4 3c4b_A Endoribonuclease dicer; 100.0 2.5E-35 8.6E-40 295.3 12.2 140 365-523 15-188 (265)
5 3o2r_A Ribonuclease III; struc 100.0 2.4E-34 8.1E-39 271.7 14.5 137 135-290 27-163 (170)
6 2a11_A Ribonuclease III, RNAse 100.0 1.4E-34 4.8E-39 286.6 9.1 140 364-522 6-148 (242)
7 1o0w_A Ribonuclease III, RNAse 100.0 1.1E-34 3.9E-39 289.2 7.5 142 364-523 20-166 (252)
8 3rv1_A K. polysporus DCR1; RNA 100.0 3.6E-34 1.2E-38 284.5 9.5 142 366-524 86-238 (246)
9 2nug_A Ribonuclease III, RNAse 100.0 1.5E-33 5.1E-38 275.6 11.5 132 364-523 3-136 (221)
10 3n3w_A Ribonuclease III; nucle 100.0 1.7E-32 5.7E-37 273.3 13.9 138 135-291 27-164 (248)
11 3c4b_A Endoribonuclease dicer; 100.0 7.5E-32 2.6E-36 270.0 15.7 139 136-290 15-187 (265)
12 3rv0_A K. polysporus DCR1; RNA 100.0 2E-32 6.9E-37 283.9 7.9 141 366-523 86-237 (341)
13 2nug_A Ribonuclease III, RNAse 100.0 4.6E-31 1.6E-35 258.0 13.0 131 135-290 3-135 (221)
14 1o0w_A Ribonuclease III, RNAse 100.0 2.5E-31 8.6E-36 265.1 10.9 145 133-290 18-165 (252)
15 2a11_A Ribonuclease III, RNAse 100.0 3.7E-31 1.3E-35 262.0 11.6 139 136-290 7-148 (242)
16 3rv1_A K. polysporus DCR1; RNA 100.0 7.5E-31 2.6E-35 260.7 11.3 181 92-290 42-236 (246)
17 3rv0_A K. polysporus DCR1; RNA 100.0 1.3E-30 4.6E-35 270.2 5.4 184 92-290 42-236 (341)
18 2qvw_A GLP_546_48378_50642; di 99.9 1.1E-26 3.6E-31 262.3 11.3 140 134-290 593-748 (756)
19 1u61_A Hypothetical protein; s 99.9 1.9E-26 6.6E-31 210.3 10.1 106 414-523 10-127 (138)
20 2gsl_A Hypothetical protein; a 99.9 8.6E-24 2.9E-28 192.5 7.0 105 414-523 13-127 (137)
21 1u61_A Hypothetical protein; s 99.8 1.1E-20 3.8E-25 172.3 9.8 106 184-290 9-126 (138)
22 2gsl_A Hypothetical protein; a 99.8 1.2E-18 4E-23 158.7 8.2 106 184-291 12-127 (137)
23 1ztd_A Hypothetical protein PF 78.1 10 0.00035 32.9 8.5 88 417-527 13-104 (133)
24 1ztd_A Hypothetical protein PF 76.8 10 0.00035 33.0 8.1 86 185-290 10-99 (133)
25 1v18_B APC protein, adenomatou 26.8 24 0.00081 25.6 1.3 22 10-31 14-35 (47)
26 3iwf_A Transcription regulator 23.5 38 0.0013 28.6 2.3 45 429-475 20-67 (107)
No 1
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=100.00 E-value=2.4e-57 Score=511.39 Aligned_cols=316 Identities=18% Similarity=0.174 Sum_probs=228.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHhhCcchHHHHHHHcCCCcccCCCchhhhhcccCCCCchhh
Q 009571 185 AGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKS 264 (532)
Q Consensus 185 ~~yERLEFLGDaVL~lvvs~~Ly~~yP~~~eG~Lt~lRs~lVsN~~La~iA~~lgL~~~I~~~~~~~~~~~~~~~KvLAD 264 (532)
.||||||||||+||+++|+++||.+||+.+||.||.+|+++|||++|+.+|+++||++||+.++++. .+++++||
T Consensus 332 ~nnERLEfLGDavL~~~vs~~L~~~~P~~~eG~Ls~lRs~lVsn~~La~~A~~lgL~~~l~~~~~e~-----~~~~ilaD 406 (756)
T 2qvw_A 332 DVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLAEFSNNLV-----AKSKTWAD 406 (756)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTTCTTTCBCCSCC-------CCCCHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCchHHHHHHHHcChHHHhccCCCCC-----CcccHHHh
Confidence 4899999999999999999999999999999999999999999999999999999999999988653 45899999
Q ss_pred HHHHHHHHHHhh-cChHHHHHHHHHHhCCCCCccc----c-ch-h--hhhhcc--cc--------cc-----cccccc--
Q 009571 265 VFWALFGAIYLC-FGFPEVYRVLFEVFGMDPEDKE----C-QP-K--LRRQLE--DV--------DY-----VSVEFE-- 318 (532)
Q Consensus 265 vfEALIGAIylD-~G~~~a~~~i~~~~g~d~~~~~----~-~p-k--l~~~le--di--------d~-----vs~ef~-- 318 (532)
+|||+|||||+| +|++.|++|+.+++...++... | .| + +...+. .+ +. .++...
T Consensus 407 ~~EAliGAiylD~~G~~~a~~~v~~~~~~~~~~~~~~~~~~Dp~Kt~LqE~~q~~~ia~~v~~~~~~ak~~~~~~~~~~~ 486 (756)
T 2qvw_A 407 MYEEIVGSIFTGPNGIYGCEEFLAKTLMSPEHSKTVGSACPDAVTKASKRVCMGEAGAHEFRSLVDYACEQGISVFCSSR 486 (756)
T ss_dssp HHHHHHHHHHHSTTHHHHHHHHHHHHHBCGGGSCC---CCCHHHHHHHHHHHTSCCCHHHHHHHHHHTTTTTCCCBSSSH
T ss_pred HHHHHhCcccccccChHHHHHHHHHHHHhhhhcccccccccCchHHHHHHHHhccchhhhhhhhhhHHhhhccccchhhH
Confidence 999999999999 9999999999998853322111 0 12 1 100000 00 00 000000
Q ss_pred ----------C----cccchhhcccC-------CCc------hhhhhhcc-----------------hhhhccCCCCC--
Q 009571 319 ----------G----NKLTWQDVAAY-------KPP------EDALFAQP-----------------RLFRACVPPGM-- 352 (532)
Q Consensus 319 ----------g----~~l~w~~i~~~-------~~p------~dal~~~p-----------------~l~~~c~p~~~-- 352 (532)
+ ....|.++..+ ..| .|++.+.. +.|..|.+..+
T Consensus 487 aa~~aL~~l~~~~~~~f~~w~g~~~~~~~~~~~~~~~~~ks~~d~~~al~~g~~l~~~g~~~~~~~~~~~~~~~~~~p~~ 566 (756)
T 2qvw_A 487 VSTMFLERLRDIPAEDMLDWYRLGIQFSHRSGLSGPGGVVSVIDIMTHLARGLWLGSPGFYVEQQTDKNESACPPTIPVL 566 (756)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTSSCSSCCSCHHHHHHHHHHHHHHHCCEEECCC---------CCEEECC
T ss_pred HHHHHHHhhcccchHhHHhhcCCccccccccccccccccchhhhHHHHhhcCceeccccccccccccccccccccCCchh
Confidence 0 01134332211 011 12211110 12334433100
Q ss_pred ---c-c-----c--------cCCcccCCChHHHHHHhCCCCccCCCchhhh-------hhhhhhh------hhhhhhhhc
Q 009571 353 ---H-R-----F--------RGNLWDFDSRPQVMQTLGYPLVVQDRIPEIT-------EARNIEL------GLGLQLCFL 402 (532)
Q Consensus 353 ---~-~-----f--------~~~~~~~~~~~~l~~~Lgy~f~~~~~~~~i~-------~~~n~~~------~~lL~~Alt 402 (532)
+ . . ..++|. ..+..+|++|||+|+++ +..+. -.+++.+ ..||.+|||
T Consensus 567 ~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~lE~~lgY~F~~~--~~~~~~~~L~~~~l~~i~~~~~~~~~~LL~~AlT 643 (756)
T 2qvw_A 567 YIYHRSVQCPVLYGSLTETPTGPVAS-KVLALYEKILAYESSGG--SKHIAAQTVSRSLAVPIPSGTIPFLIRLLQIALT 643 (756)
T ss_dssp TTTTSSSCCTTTTCCCC---CTTTHH-HHHHHHHHHHSSCCCCS--SHHHHHHHHHHTTCSCCCSSCHHHHHHHHHHHHS
T ss_pred hhhcccccCccccccccccccchhhh-hHHHHHHHHhCCCccCc--chhhhHhhhhhhhccccccccccccHHHHHHHhc
Confidence 0 0 0 112222 12678999999999852 11110 0000100 248999999
Q ss_pred CCCcccCCCCCCccchhhchhhhhhhHHHHHHHHHhCCCCCCcchHHHHHHhhCcHHHHHHHHHcC--ChhhHhcchhhh
Q 009571 403 HPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKHLDAPGHWLQEKHRRILMNKFCGRYLREKN--LHRYMIYSEQVQ 480 (532)
Q Consensus 403 H~S~~~~~~~~~~~ERLEFLGDaVL~l~vs~~L~~~~p~~~eG~Lt~~rs~lV~~~~la~~a~~l~--L~~~l~~g~~~~ 480 (532)
|+| ||||||||||||+++|++|||++||+.+||.||++|+++||+++||.+|+++| |++||++|+|+.
T Consensus 644 H~S----------neRLEfLGDaVL~l~vs~~L~~~~p~~~eG~Lt~lrs~lV~~~~La~~a~~lg~~L~~~l~~~~~e~ 713 (756)
T 2qvw_A 644 PHV----------YQKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAETNSVLGRLTKRFPSVVSEVIIESHPKI 713 (756)
T ss_dssp TGG----------GHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSHHHHHHHHHTSCTHHHHHHHHHSTTC
T ss_pred Ccc----------chHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHhCChHHHHHHHHhcccHHHHHhcCchhh
Confidence 999 79999999999999999999999999999999999999999999999999999 999999998874
Q ss_pred hhhhccccCCCchHHhHHHHHHHHHHhhCCchHHHHHHHHhcccc
Q 009571 481 DAYEHNRRLRNPSTTAVQQALHGLAYTVYGKPDVRRLMFEVFDFE 525 (532)
Q Consensus 481 ~~~~~~~~~~~~~l~d~~EAliGAiYLd~G~~~~~~~v~~~~~~~ 525 (532)
. .++++++|+|||+|||||+|+|++.|++||.++|.+.
T Consensus 714 ~-------~~~kilaD~~EAliGAiylD~G~~~a~~~v~~~~~~~ 751 (756)
T 2qvw_A 714 Q-------PDSKVYGDTFEAILAAILLACGEEAAGAFVREHVLPQ 751 (756)
T ss_dssp C-------TTCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTGGG
T ss_pred c-------CCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2 5688999999999999999999999999999999653
No 2
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=100.00 E-value=1.3e-37 Score=294.01 Aligned_cols=139 Identities=19% Similarity=0.214 Sum_probs=128.9
Q ss_pred ChHHHHHHhCCCCccCCCchhhhhhhhhhhhhhhhhhhcCCCcccCCCCCCccchhhchhhhhhhHHHHHHHHHhCCCCC
Q 009571 364 SRPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKHLDAP 443 (532)
Q Consensus 364 ~~~~l~~~Lgy~f~~~~~~~~i~~~~n~~~~~lL~~AltH~S~~~~~~~~~~~ERLEFLGDaVL~l~vs~~L~~~~p~~~ 443 (532)
.+..++++|||+|+ |.+ ||.+||||+|+... .+||||||||||||+++|++|||.+||+.+
T Consensus 27 ~l~~le~~lgy~F~------------d~~---LL~~AlTH~S~~~~----~~neRLEfLGDaVL~l~vs~~L~~~~P~~~ 87 (170)
T 3o2r_A 27 NIEKLEQSLTYEFK------------DKN---LLIHALTHKSFKKS----YNNERLEFLGDAVLDLVVGEYLFHKFAKDA 87 (170)
T ss_dssp CHHHHHHHHTCCCS------------SHH---HHHHHTBCTTSSTT----CCSHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHhCCCCC------------CHH---HHHHHhcCCCCCCC----cchHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 46899999999997 343 99999999997543 589999999999999999999999999999
Q ss_pred CcchHHHHHHhhCcHHHHHHHHHcCChhhHhcchhhhhhhhccccCCCchHHhHHHHHHHHHHhhCCchHHHHHHHHhcc
Q 009571 444 GHWLQEKHRRILMNKFCGRYLREKNLHRYMIYSEQVQDAYEHNRRLRNPSTTAVQQALHGLAYTVYGKPDVRRLMFEVFD 523 (532)
Q Consensus 444 eG~Lt~~rs~lV~~~~la~~a~~l~L~~~l~~g~~~~~~~~~~~~~~~~~l~d~~EAliGAiYLd~G~~~~~~~v~~~~~ 523 (532)
||.||++|+.+||+++|+.+|+++||++||++++++..++ ++.++++++|+|||+|||||||+|++.|++||.++|.
T Consensus 88 eg~Lt~~r~~lVs~~~La~ia~~lgL~~~l~~~~~~~~~~---~~~~~~ilad~fEAliGAiylD~G~~~a~~~i~~~~~ 164 (170)
T 3o2r_A 88 EGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNG---GKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIE 164 (170)
T ss_dssp HHHHHHHHHHHSSHHHHHHHHHHTTGGGTCBCCHHHHHTT---GGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCHHHHHHHHHHcCcHHhhhcCcchhhcC---CCCcchHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987765 7788899999999999999999999999999999996
Q ss_pred c
Q 009571 524 F 524 (532)
Q Consensus 524 ~ 524 (532)
+
T Consensus 165 ~ 165 (170)
T 3o2r_A 165 K 165 (170)
T ss_dssp H
T ss_pred H
Confidence 4
No 3
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=100.00 E-value=1.3e-35 Score=295.58 Aligned_cols=138 Identities=19% Similarity=0.223 Sum_probs=127.9
Q ss_pred ChHHHHHHhCCCCccCCCchhhhhhhhhhhhhhhhhhhcCCCcccCCCCCCccchhhchhhhhhhHHHHHHHHHhCCCCC
Q 009571 364 SRPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKHLDAP 443 (532)
Q Consensus 364 ~~~~l~~~Lgy~f~~~~~~~~i~~~~n~~~~~lL~~AltH~S~~~~~~~~~~~ERLEFLGDaVL~l~vs~~L~~~~p~~~ 443 (532)
.+..++++|||+|+ |.+ ||.+||||+||... .+||||||||||||+++|++|||.+||+.+
T Consensus 27 ~l~~le~~lgy~F~------------~~~---LL~~AlTH~S~~~~----~~neRLefLGDavL~~~v~~~L~~~~p~~~ 87 (248)
T 3n3w_A 27 NIEKLEQSLTYEFK------------DKN---LLIHALTHKSFKKS----YNNERLEFLGDAVLDLVVGEYLFHKFAKDA 87 (248)
T ss_dssp THHHHHHHHTCCCS------------SHH---HHHHHTBCTTSBTT----BCSHHHHHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHCCCCC------------CHH---HHHHHhcCcCCCCC----CCcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 36889999999997 344 99999999997543 589999999999999999999999999999
Q ss_pred CcchHHHHHHhhCcHHHHHHHHHcCChhhHhcchhhhhhhhccccCCCchHHhHHHHHHHHHHhhCCchHHHHHHHHhcc
Q 009571 444 GHWLQEKHRRILMNKFCGRYLREKNLHRYMIYSEQVQDAYEHNRRLRNPSTTAVQQALHGLAYTVYGKPDVRRLMFEVFD 523 (532)
Q Consensus 444 eG~Lt~~rs~lV~~~~la~~a~~l~L~~~l~~g~~~~~~~~~~~~~~~~~l~d~~EAliGAiYLd~G~~~~~~~v~~~~~ 523 (532)
||.||++|+.+||+++|+.+|+++||++||++++++...+ |+.++++++|+|||+|||||||+|++.|++||.++|.
T Consensus 88 eg~Ls~~r~~lVs~~~La~~a~~lgL~~~l~~~~~e~~~~---g~~~~~~lad~fEAliGAiyld~G~~~~~~~i~~~~~ 164 (248)
T 3n3w_A 88 EGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNG---GKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIE 164 (248)
T ss_dssp CCCHHHHHHHHHSHHHHHHHHHHTTGGGTCBCCHHHHHTT---GGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHcCcHHHhhcCchhhhcC---CCCCccHHHHHHHHHHHHHHHHCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987665 7788899999999999999999999999999999984
No 4
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=100.00 E-value=2.5e-35 Score=295.27 Aligned_cols=140 Identities=16% Similarity=0.255 Sum_probs=121.7
Q ss_pred hHHHHHHhCCCCccCCCchhhhhhhhhhhhhhhhhhhcCCCcccCCCCCCccchhhchhhhhhhHHHHHHHHHhCCCCCC
Q 009571 365 RPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKHLDAPG 444 (532)
Q Consensus 365 ~~~l~~~Lgy~f~~~~~~~~i~~~~n~~~~~lL~~AltH~S~~~~~~~~~~~ERLEFLGDaVL~l~vs~~L~~~~p~~~e 444 (532)
+..++++|||+|+ |.+ ||.+||||+||.. ++...|||||||||||||+++|++|||.+||+.+|
T Consensus 15 l~~le~~lgy~F~------------~~~---LL~~AlTH~S~~~-~~~~~~neRLEfLGDaVL~l~v~~~L~~~~p~~~~ 78 (265)
T 3c4b_A 15 FETFEKKINYRFK------------NKA---YLLQAFTHASYHY-NTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 78 (265)
T ss_dssp HHHHHHHHTCCCS------------SHH---HHHHHHBCTTCTT-CCSSCCSHHHHHHHHHHHHHHHHHHHHHCTTCCCH
T ss_pred HHHHHHHhCCccC------------CHH---HHHHHhcCcCcCC-CCCCCchHhHHHHhHHHHHHHHHHHHHHhCCCCCH
Confidence 5789999999997 343 9999999999743 33456899999999999999999999999999999
Q ss_pred cchHHHHHHhhCcHHHHHHHHHcCChhhHh-----------------cchhh---------------hhhhhccccCCCc
Q 009571 445 HWLQEKHRRILMNKFCGRYLREKNLHRYMI-----------------YSEQV---------------QDAYEHNRRLRNP 492 (532)
Q Consensus 445 G~Lt~~rs~lV~~~~la~~a~~l~L~~~l~-----------------~g~~~---------------~~~~~~~~~~~~~ 492 (532)
|.||++|+++||+++||.+|+++||++||+ +|+++ ... .++.+++
T Consensus 79 g~Lt~lrs~lV~~~~La~~a~~lgl~~~l~~~~~~l~~~i~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~ 155 (265)
T 3c4b_A 79 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKE---EDIEVPK 155 (265)
T ss_dssp HHHHHHHHHHSSHHHHHHHHHHTTGGGTCBCCCHHHHHHHHHHHHHHHHHHC---------------------CCSCCCH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHcChHHHHHhcChhHHHHHHHHHHHHhhhhhhcchhHHhhhcchhhhhh---cccccch
Confidence 999999999999999999999999999987 33332 111 2567789
Q ss_pred hHHhHHHHHHHHHHhhCCc--hHHHHHHHHhcc
Q 009571 493 STTAVQQALHGLAYTVYGK--PDVRRLMFEVFD 523 (532)
Q Consensus 493 ~l~d~~EAliGAiYLd~G~--~~~~~~v~~~~~ 523 (532)
+++|+|||+|||||||+|+ +.|++||.++|.
T Consensus 156 ~laD~~EAliGAiylD~G~~~~~~~~~i~~~~~ 188 (265)
T 3c4b_A 156 AMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQ 188 (265)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhheeeecCCCHHHHHHHHHHHHH
Confidence 9999999999999999999 889999999884
No 5
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=100.00 E-value=2.4e-34 Score=271.66 Aligned_cols=137 Identities=21% Similarity=0.352 Sum_probs=129.7
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHHcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 009571 135 YLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRES 214 (532)
Q Consensus 135 ~l~~le~~LGY~F~~~~~~~~~~p~~~~~~LL~~ALTH~S~~~~~~~~~~~~yERLEFLGDaVL~lvvs~~Ly~~yP~~~ 214 (532)
.+..++++|||+|++ +.||.+||||+||.+. .+|||||||||+||+++|+++||.+||+.+
T Consensus 27 ~l~~le~~lgy~F~d-------------~~LL~~AlTH~S~~~~------~~neRLEfLGDaVL~l~vs~~L~~~~P~~~ 87 (170)
T 3o2r_A 27 NIEKLEQSLTYEFKD-------------KNLLIHALTHKSFKKS------YNNERLEFLGDAVLDLVVGEYLFHKFAKDA 87 (170)
T ss_dssp CHHHHHHHHTCCCSS-------------HHHHHHHTBCTTSSTT------CCSHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHhCCCCCC-------------HHHHHHHhcCCCCCCC------cchHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 478999999999998 9999999999999753 699999999999999999999999999999
Q ss_pred hhhHHHHHHHhhCcchHHHHHHHcCCCcccCCCchhhhhcccCCCCchhhHHHHHHHHHHhhcChHHHHHHHHHHh
Q 009571 215 PAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF 290 (532)
Q Consensus 215 eG~Lt~lRs~lVsN~~La~iA~~lgL~~~I~~~~~~~~~~~~~~~KvLADvfEALIGAIylD~G~~~a~~~i~~~~ 290 (532)
+|.|+.+|+.+|||++|+.+|+++||+++|++++++...+++.+++++||+|||+|||||+|+|++.|++||.+++
T Consensus 88 eg~Lt~~r~~lVs~~~La~ia~~lgL~~~l~~~~~~~~~~~~~~~~ilad~fEAliGAiylD~G~~~a~~~i~~~~ 163 (170)
T 3o2r_A 88 EGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLI 163 (170)
T ss_dssp HHHHHHHHHHHSSHHHHHHHHHHTTGGGTCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCHHHHHHHHHHcCcHHhhhcCcchhhcCCCCcchHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998877666677899999999999999999999999999999987
No 6
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.4e-34 Score=286.57 Aligned_cols=140 Identities=19% Similarity=0.216 Sum_probs=127.4
Q ss_pred ChHHHHHHhCCCCccCCCchhhhhhhhhhhhhhhhhhhcCCCcccCCCCCCccchhhchhhhhhhHHHHHHHHHhCCCCC
Q 009571 364 SRPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKHLDAP 443 (532)
Q Consensus 364 ~~~~l~~~Lgy~f~~~~~~~~i~~~~n~~~~~lL~~AltH~S~~~~~~~~~~~ERLEFLGDaVL~l~vs~~L~~~~p~~~ 443 (532)
.+..++++|||+| + . .||.+||||+||........+||||||||||||+++|++|||.+||+.+
T Consensus 6 ~l~~l~~~lgy~f-~------------~---~ll~~AlTH~S~~~~~~~~~~nerLefLGDavL~~~v~~~L~~~~p~~~ 69 (242)
T 2a11_A 6 SRQPLLDALGVDL-P------------D---ELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRS 69 (242)
T ss_dssp CCHHHHHHHTSCC-C------------H---HHHHHHTBCHHHHHHTTSCCCTHHHHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred HHHHHHHHHCCCC-C------------H---HHHHHHhCCcCccccCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4578999999999 4 2 3999999999975432334689999999999999999999999999999
Q ss_pred CcchHHHHHHhhCcHHHHHHHHHc---CChhhHhcchhhhhhhhccccCCCchHHhHHHHHHHHHHhhCCchHHHHHHHH
Q 009571 444 GHWLQEKHRRILMNKFCGRYLREK---NLHRYMIYSEQVQDAYEHNRRLRNPSTTAVQQALHGLAYTVYGKPDVRRLMFE 520 (532)
Q Consensus 444 eG~Lt~~rs~lV~~~~la~~a~~l---~L~~~l~~g~~~~~~~~~~~~~~~~~l~d~~EAliGAiYLd~G~~~~~~~v~~ 520 (532)
||.||++|+.+||+++|+.+|+++ ||++||++++++..++ |+.++++++|+|||+|||||||+|++.|++||.+
T Consensus 70 ~g~Ls~~r~~lV~~~~la~~a~~l~~~gL~~~l~~~~~e~~~~---~~~~~~~lad~~EAliGAiyld~g~~~~~~~i~~ 146 (242)
T 2a11_A 70 EGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTG---GADKSSILADGMESLLGAIYLQHGMEKAREVILR 146 (242)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHHSSSCSGGGCBCCHHHHHTT---GGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHhhhhChHHHhhcCchhhhcC---CCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999999999999999999 9999999999987665 6778899999999999999999999999999999
Q ss_pred hc
Q 009571 521 VF 522 (532)
Q Consensus 521 ~~ 522 (532)
+|
T Consensus 147 ~~ 148 (242)
T 2a11_A 147 LF 148 (242)
T ss_dssp HT
T ss_pred HH
Confidence 88
No 7
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=100.00 E-value=1.1e-34 Score=289.22 Aligned_cols=142 Identities=19% Similarity=0.189 Sum_probs=127.3
Q ss_pred ChHHHHHHhCCCCccCCCchhhhhhhhhhhhhhhhhhhcCCCcccCCCCC-----CccchhhchhhhhhhHHHHHHHHHh
Q 009571 364 SRPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPR-----FCFERLEYVGQKIQDLVMAERLLMK 438 (532)
Q Consensus 364 ~~~~l~~~Lgy~f~~~~~~~~i~~~~n~~~~~lL~~AltH~S~~~~~~~~-----~~~ERLEFLGDaVL~l~vs~~L~~~ 438 (532)
.+..++++|||+|+ |.+ ||.+||||+||....... .+||||||||||||+++|++|||.+
T Consensus 20 ~~~~l~~~lgy~f~------------~~~---LL~~AlTH~S~~~~~~~~~~~~~~~nerLefLGDavL~l~v~~~L~~~ 84 (252)
T 1o0w_A 20 IVEEFQKETGINFK------------NEE---LLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKK 84 (252)
T ss_dssp HHHHHHHHHCCCCS------------SHH---HHHHHHBCHHHHHHHHHTTCTTCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCC------------CHH---HHHHHhCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35789999999997 343 999999999974321111 2899999999999999999999999
Q ss_pred CCCCCCcchHHHHHHhhCcHHHHHHHHHcCChhhHhcchhhhhhhhccccCCCchHHhHHHHHHHHHHhhCCchHHHHHH
Q 009571 439 HLDAPGHWLQEKHRRILMNKFCGRYLREKNLHRYMIYSEQVQDAYEHNRRLRNPSTTAVQQALHGLAYTVYGKPDVRRLM 518 (532)
Q Consensus 439 ~p~~~eG~Lt~~rs~lV~~~~la~~a~~l~L~~~l~~g~~~~~~~~~~~~~~~~~l~d~~EAliGAiYLd~G~~~~~~~v 518 (532)
||+.+||.||++|+.+||+++|+.+|+++||++||++++++...+ |+.++++++|+|||+|||||||+|++.|++||
T Consensus 85 ~p~~~eg~Ls~~r~~lV~~~~la~~a~~lgL~~~l~~~~~e~~~~---~~~~~~~lad~~EAliGAiyld~g~~~~~~~i 161 (252)
T 1o0w_A 85 YPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTG---GRDRDSILADAFEALLAAIYLDQGYEKIKELF 161 (252)
T ss_dssp CTTSCHHHHHHHHHHHTSHHHHHHHHHHTTHHHHCBCCHHHHHTT---GGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCHHHHHHHHHHcCcHHhhccCchhhhcC---CCCCccHHHhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999987665 77888999999999999999999999999999
Q ss_pred HHhcc
Q 009571 519 FEVFD 523 (532)
Q Consensus 519 ~~~~~ 523 (532)
.++|.
T Consensus 162 ~~~~~ 166 (252)
T 1o0w_A 162 EQEFE 166 (252)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99884
No 8
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=3.6e-34 Score=284.54 Aligned_cols=142 Identities=15% Similarity=0.138 Sum_probs=114.1
Q ss_pred HHHHHHhCCC-CccCCCchhhhhhhhhhhhhhhhhhhcCCCcccCC-------CCCCccchhhchhhhhhhHHHHHHHHH
Q 009571 366 PQVMQTLGYP-LVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFE-------HPRFCFERLEYVGQKIQDLVMAERLLM 437 (532)
Q Consensus 366 ~~l~~~Lgy~-f~~~~~~~~i~~~~n~~~~~lL~~AltH~S~~~~~-------~~~~~~ERLEFLGDaVL~l~vs~~L~~ 437 (532)
..+|++|||+ |+ |.+ ||.+||||+||.... ....+||||||||||||+++|++|||+
T Consensus 86 ~~lE~~lgY~~F~------------d~~---LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDaVL~l~vs~~L~~ 150 (246)
T 3rv1_A 86 TDVDMFIKYPVVY------------DEN---LENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYT 150 (246)
T ss_dssp CGGGGGCSSCCCS------------CHH---HHHHTTCCCC--------------CCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCcC------------CHH---HHHHHHcCCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999 87 343 999999999975432 124689999999999999999999999
Q ss_pred hCCCCCCcchHHHHHHhhCcHHHHHHHHHcCChhhHhcchhhhhhhhccccCCCchHHhHHHHHHHHHHhhC---CchHH
Q 009571 438 KHLDAPGHWLQEKHRRILMNKFCGRYLREKNLHRYMIYSEQVQDAYEHNRRLRNPSTTAVQQALHGLAYTVY---GKPDV 514 (532)
Q Consensus 438 ~~p~~~eG~Lt~~rs~lV~~~~la~~a~~l~L~~~l~~g~~~~~~~~~~~~~~~~~l~d~~EAliGAiYLd~---G~~~~ 514 (532)
+||+.+||.||++|+.+||+++|+.+|+++||++||+++.|....+ .+..++++++|+|||+|||||+|. |++.|
T Consensus 151 ~~P~~~eG~Lt~lRs~lVsn~~La~iA~~lgL~~~l~~~~g~~~~~--~~~~~~~ilAD~fEAlIGAIylD~~g~~l~~v 228 (246)
T 3rv1_A 151 RFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQGNIATPTRV--VKDKMSKRYADCVQAYIGALVIDRFGTEFLDI 228 (246)
T ss_dssp HCTTCCHHHHHHHHHHHHSHHHHHHHHHHTTSHHHHCSSCC-------------CHHHHHHHHHHHHHHHHHCSSTTHHH
T ss_pred hCCCCChhHHHHHHHHHhCHHHHHHHHHHCCcHHHHhhcCCHhhhc--cCcccccHHHHHHHHHHHHHhHcCCCCCHHHH
Confidence 9999999999999999999999999999999999999653332211 133578999999999999999998 49999
Q ss_pred HHHHHHhccc
Q 009571 515 RRLMFEVFDF 524 (532)
Q Consensus 515 ~~~v~~~~~~ 524 (532)
++|+.++|.+
T Consensus 229 ~~~l~~L~~p 238 (246)
T 3rv1_A 229 KEWLEELSEK 238 (246)
T ss_dssp HHHHHHHTHH
T ss_pred HHHHHHHHHH
Confidence 9999999953
No 9
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=100.00 E-value=1.5e-33 Score=275.62 Aligned_cols=132 Identities=19% Similarity=0.314 Sum_probs=120.8
Q ss_pred ChHHHHHHhCCCCccCCCchhhhhhhhhhhhhhhhhhhcCCCcccCCCCCCccchhhchhhhhhhHHHHHHHHHhCCCCC
Q 009571 364 SRPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKHLDAP 443 (532)
Q Consensus 364 ~~~~l~~~Lgy~f~~~~~~~~i~~~~n~~~~~lL~~AltH~S~~~~~~~~~~~ERLEFLGDaVL~l~vs~~L~~~~p~~~ 443 (532)
.+..++++|||+|+ |.+ ||.+||||+||... .+||||||||||||+++|++|||++||+.+
T Consensus 3 ~~~~l~~~lg~~f~------------~~~---ll~~AlTh~S~~~~----~~nerLefLGDavL~~~v~~~L~~~~p~~~ 63 (221)
T 2nug_A 3 MLEQLEKKLGYTFK------------DKS---LLEKALTHVSYSKK----EHYETLEFLGDALVNFFIVDLLVQYSPNKR 63 (221)
T ss_dssp CHHHHHHHHTCCCS------------SHH---HHHHHHBCTTTCSS----SCSHHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHhCCCcC------------CHH---HHHHHhCCCCCCCC----CCchHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 45789999999997 343 99999999997432 489999999999999999999999999999
Q ss_pred CcchHHHHHHhhCcHHHHHHHHHcCChhhHhcchhhhhhhhccccCCCchHHhHHHHHHHHHHhhCCchH--HHHHHHHh
Q 009571 444 GHWLQEKHRRILMNKFCGRYLREKNLHRYMIYSEQVQDAYEHNRRLRNPSTTAVQQALHGLAYTVYGKPD--VRRLMFEV 521 (532)
Q Consensus 444 eG~Lt~~rs~lV~~~~la~~a~~l~L~~~l~~g~~~~~~~~~~~~~~~~~l~d~~EAliGAiYLd~G~~~--~~~~v~~~ 521 (532)
||.||++|+.+||+++|+.+|+++||++||+.|+++. .+++++|+|||+|||||+|+|++. |++||.++
T Consensus 64 ~g~Ls~~r~~lV~~~~la~~a~~l~l~~~l~~~~~~~---------~~~~lad~~EAliGAiyld~g~~~~~~~~~i~~~ 134 (221)
T 2nug_A 64 EGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKI---------NETIIGDVFEALWAAVYIDSGRDANFTRELFYKL 134 (221)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHTTTGGGTCBSCTTCC---------CHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHcChHHhhccCCCcc---------cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999998763 278999999999999999999999 99999998
Q ss_pred cc
Q 009571 522 FD 523 (532)
Q Consensus 522 ~~ 523 (532)
|.
T Consensus 135 ~~ 136 (221)
T 2nug_A 135 FK 136 (221)
T ss_dssp HH
T ss_pred HH
Confidence 83
No 10
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.98 E-value=1.7e-32 Score=273.26 Aligned_cols=138 Identities=21% Similarity=0.348 Sum_probs=129.6
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHHcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 009571 135 YLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRES 214 (532)
Q Consensus 135 ~l~~le~~LGY~F~~~~~~~~~~p~~~~~~LL~~ALTH~S~~~~~~~~~~~~yERLEFLGDaVL~lvvs~~Ly~~yP~~~ 214 (532)
.+..++++|||+|++ +.||.+||||+||.+. .+|||||||||+||+++|+++||.+||+.+
T Consensus 27 ~l~~le~~lgy~F~~-------------~~LL~~AlTH~S~~~~------~~neRLefLGDavL~~~v~~~L~~~~p~~~ 87 (248)
T 3n3w_A 27 NIEKLEQSLTYEFKD-------------KNLLIHALTHKSFKKS------YNNERLEFLGDAVLDLVVGEYLFHKFAKDA 87 (248)
T ss_dssp THHHHHHHHTCCCSS-------------HHHHHHHTBCTTSBTT------BCSHHHHHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHCCCCCC-------------HHHHHHHhcCcCCCCC------CCcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 378899999999998 9999999999999753 699999999999999999999999999999
Q ss_pred hhhHHHHHHHhhCcchHHHHHHHcCCCcccCCCchhhhhcccCCCCchhhHHHHHHHHHHhhcChHHHHHHHHHHhC
Q 009571 215 PAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFG 291 (532)
Q Consensus 215 eG~Lt~lRs~lVsN~~La~iA~~lgL~~~I~~~~~~~~~~~~~~~KvLADvfEALIGAIylD~G~~~a~~~i~~~~g 291 (532)
+|.|+.+|+.+|||++|+.+|+++||+++|+.++++...+++..++++||+|||+|||||+|+|++.|++||.+++.
T Consensus 88 eg~Ls~~r~~lVs~~~La~~a~~lgL~~~l~~~~~e~~~~g~~~~~~lad~fEAliGAiyld~G~~~~~~~i~~~~~ 164 (248)
T 3n3w_A 88 EGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIE 164 (248)
T ss_dssp CCCHHHHHHHHHSHHHHHHHHHHTTGGGTCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHcCcHHHhhcCchhhhcCCCCCccHHHHHHHHHHHHHHHHCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988766666778999999999999999999999999999998873
No 11
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=99.97 E-value=7.5e-32 Score=270.04 Aligned_cols=139 Identities=18% Similarity=0.293 Sum_probs=122.9
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHHcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCCh
Q 009571 136 LLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESP 215 (532)
Q Consensus 136 l~~le~~LGY~F~~~~~~~~~~p~~~~~~LL~~ALTH~S~~~~~~~~~~~~yERLEFLGDaVL~lvvs~~Ly~~yP~~~e 215 (532)
+..++++|||+|++ +.||.+||||+||.... ...||||||||||+||+++|++|||.+||+.++
T Consensus 15 l~~le~~lgy~F~~-------------~~LL~~AlTH~S~~~~~---~~~~neRLEfLGDaVL~l~v~~~L~~~~p~~~~ 78 (265)
T 3c4b_A 15 FETFEKKINYRFKN-------------KAYLLQAFTHASYHYNT---ITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 78 (265)
T ss_dssp HHHHHHHHTCCCSS-------------HHHHHHHHBCTTCTTCC---SSCCSHHHHHHHHHHHHHHHHHHHHHCTTCCCH
T ss_pred HHHHHHHhCCccCC-------------HHHHHHHhcCcCcCCCC---CCCchHhHHHHhHHHHHHHHHHHHHHhCCCCCH
Confidence 67899999999998 89999999999997542 246999999999999999999999999999999
Q ss_pred hhHHHHHHHhhCcchHHHHHHHcCCCcccCCCchh--------------------------------hhhcccCCCCchh
Q 009571 216 APMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEM--------------------------------DRLIRKEREPPVK 263 (532)
Q Consensus 216 G~Lt~lRs~lVsN~~La~iA~~lgL~~~I~~~~~~--------------------------------~~~~~~~~~KvLA 263 (532)
|.||.+|+.+|||.+|+.+|+++||++||++.... ...++...++++|
T Consensus 79 g~Lt~lrs~lV~~~~La~~a~~lgl~~~l~~~~~~l~~~i~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~la 158 (265)
T 3c4b_A 79 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMG 158 (265)
T ss_dssp HHHHHHHHHHSSHHHHHHHHHHTTGGGTCBCCCHHHHHHHHHHHHHHHHHHC------------------CCSCCCHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHcChHHHHHhcChhHHHHHHHHHHHHhhhhhhcchhHHhhhcchhhhhhcccccchHHH
Confidence 99999999999999999999999999999854311 1123345789999
Q ss_pred hHHHHHHHHHHhhcCh--HHHHHHHHHHh
Q 009571 264 SVFWALFGAIYLCFGF--PEVYRVLFEVF 290 (532)
Q Consensus 264 DvfEALIGAIylD~G~--~~a~~~i~~~~ 290 (532)
|+|||+|||||+|+|+ +.|++|+.+++
T Consensus 159 D~~EAliGAiylD~G~~~~~~~~~i~~~~ 187 (265)
T 3c4b_A 159 DIFESLAGAIYMDSGMSLEVVWQVYYPMM 187 (265)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhhheeeecCCCHHHHHHHHHHHH
Confidence 9999999999999999 78999998876
No 12
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=99.97 E-value=2e-32 Score=283.88 Aligned_cols=141 Identities=15% Similarity=0.141 Sum_probs=117.7
Q ss_pred HHHHHHhCCC-CccCCCchhhhhhhhhhhhhhhhhhhcCCCcccCCC-------CCCccchhhchhhhhhhHHHHHHHHH
Q 009571 366 PQVMQTLGYP-LVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEH-------PRFCFERLEYVGQKIQDLVMAERLLM 437 (532)
Q Consensus 366 ~~l~~~Lgy~-f~~~~~~~~i~~~~n~~~~~lL~~AltH~S~~~~~~-------~~~~~ERLEFLGDaVL~l~vs~~L~~ 437 (532)
..+|++|||+ |+ |.+ ||.+||||+||..... ...+||||||||||||+++|++|||.
T Consensus 86 ~~lE~~igy~~F~------------d~~---LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDavL~l~vs~~L~~ 150 (341)
T 3rv0_A 86 TDVDMFIKYPVVY------------DEN---LENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYT 150 (341)
T ss_dssp CTTGGGCSSCCCS------------CHH---HHHHHHCCCCCC---CCSCHHHHGGGCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhcCCCCcC------------CHH---HHHHHhcCcCccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888 86 444 9999999999754321 13589999999999999999999999
Q ss_pred hCCCCCCcchHHHHHHhhCcHHHHHHHHHcCChhhHhcchhhhhhhhccccCCCchHHhHHHHHHHHHHhhC---CchHH
Q 009571 438 KHLDAPGHWLQEKHRRILMNKFCGRYLREKNLHRYMIYSEQVQDAYEHNRRLRNPSTTAVQQALHGLAYTVY---GKPDV 514 (532)
Q Consensus 438 ~~p~~~eG~Lt~~rs~lV~~~~la~~a~~l~L~~~l~~g~~~~~~~~~~~~~~~~~l~d~~EAliGAiYLd~---G~~~~ 514 (532)
+||+.+||.||++|+.+||+++|+.+|+++||++||+++.|....+ .+..++++++|+|||+|||||||+ |++.|
T Consensus 151 ~~P~~~eG~Lt~lr~~lVs~~~La~iA~~lgL~~~l~~~~g~~~~~--~~~~~~~ilaD~fEAlIGAIylD~~~~G~~~a 228 (341)
T 3rv0_A 151 RFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQGNIATPTRV--VKDKMSKRYADCVEAYIGALVIDRFGTEFLDI 228 (341)
T ss_dssp HCTTCCHHHHHHHHHHHHSHHHHHHHHHHTTTTTTTCCSSCCC------CCHHHHHHHHHHHHHHHHHHHHHCSSTTHHH
T ss_pred hCCCCChhHHHHHHHHHhCHHHHHHHHHHcCcHHHhhhcCChhhhc--cCCccccHHHHHHHHHHHHHhhcCccCCHHHH
Confidence 9999999999999999999999999999999999999653332111 133467899999999999999998 99999
Q ss_pred HHHHHHhcc
Q 009571 515 RRLMFEVFD 523 (532)
Q Consensus 515 ~~~v~~~~~ 523 (532)
++||.++|.
T Consensus 229 ~~fi~~l~~ 237 (341)
T 3rv0_A 229 KEWLEELSE 237 (341)
T ss_dssp HHHHHHHTH
T ss_pred HHHHHHHHH
Confidence 999998873
No 13
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.97 E-value=4.6e-31 Score=258.00 Aligned_cols=131 Identities=21% Similarity=0.294 Sum_probs=122.6
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHHcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 009571 135 YLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRES 214 (532)
Q Consensus 135 ~l~~le~~LGY~F~~~~~~~~~~p~~~~~~LL~~ALTH~S~~~~~~~~~~~~yERLEFLGDaVL~lvvs~~Ly~~yP~~~ 214 (532)
.+..++++|||+|++ +.||.+||||+||.+. .+|||||||||+||+++|+++||.+||+.+
T Consensus 3 ~~~~l~~~lg~~f~~-------------~~ll~~AlTh~S~~~~------~~nerLefLGDavL~~~v~~~L~~~~p~~~ 63 (221)
T 2nug_A 3 MLEQLEKKLGYTFKD-------------KSLLEKALTHVSYSKK------EHYETLEFLGDALVNFFIVDLLVQYSPNKR 63 (221)
T ss_dssp CHHHHHHHHTCCCSS-------------HHHHHHHHBCTTTCSS------SCSHHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHhCCCcCC-------------HHHHHHHhCCCCCCCC------CCchHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 457899999999998 8999999999999753 589999999999999999999999999999
Q ss_pred hhhHHHHHHHhhCcchHHHHHHHcCCCcccCCCchhhhhcccCCCCchhhHHHHHHHHHHhhcChHH--HHHHHHHHh
Q 009571 215 PAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPE--VYRVLFEVF 290 (532)
Q Consensus 215 eG~Lt~lRs~lVsN~~La~iA~~lgL~~~I~~~~~~~~~~~~~~~KvLADvfEALIGAIylD~G~~~--a~~~i~~~~ 290 (532)
+|.|+.+|+.+|||.+|+.+|+++||+++++.+++... ++++||+|||+|||||+|+|++. +++|+.+++
T Consensus 64 ~g~Ls~~r~~lV~~~~la~~a~~l~l~~~l~~~~~~~~------~~~lad~~EAliGAiyld~g~~~~~~~~~i~~~~ 135 (221)
T 2nug_A 64 EGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKIN------ETIIGDVFEALWAAVYIDSGRDANFTRELFYKLF 135 (221)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHTTTGGGTCBSCTTCCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHcChHHhhccCCCccc------chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999876432 79999999999999999999999 999998887
No 14
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.97 E-value=2.5e-31 Score=265.06 Aligned_cols=145 Identities=21% Similarity=0.358 Sum_probs=130.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHHcCCCcccccccc---CCCCchHHHHHHHHHHHHHHHHHHHhh
Q 009571 133 DEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARH---VRAGHSRLCFLGQFVLELAFCEFFLQR 209 (532)
Q Consensus 133 ~~~l~~le~~LGY~F~~~~~~~~~~p~~~~~~LL~~ALTH~S~~~~~~~~---~~~~yERLEFLGDaVL~lvvs~~Ly~~ 209 (532)
+..+..++++|||+|++ +.||.+||||+||.+..... ...+|||||||||+||+++|+++||.+
T Consensus 18 ~~~~~~l~~~lgy~f~~-------------~~LL~~AlTH~S~~~~~~~~~~~~~~~nerLefLGDavL~l~v~~~L~~~ 84 (252)
T 1o0w_A 18 RKIVEEFQKETGINFKN-------------EELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKK 84 (252)
T ss_dssp HHHHHHHHHHHCCCCSS-------------HHHHHHHHBCHHHHHHHHHTTCTTCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCC-------------HHHHHHHhCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34778999999999998 89999999999997542100 113899999999999999999999999
Q ss_pred CCCCChhhHHHHHHHhhCcchHHHHHHHcCCCcccCCCchhhhhcccCCCCchhhHHHHHHHHHHhhcChHHHHHHHHHH
Q 009571 210 YPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEV 289 (532)
Q Consensus 210 yP~~~eG~Lt~lRs~lVsN~~La~iA~~lgL~~~I~~~~~~~~~~~~~~~KvLADvfEALIGAIylD~G~~~a~~~i~~~ 289 (532)
||+.++|.|+.+|+.+|||.+|+.+|+++||++||+.++++...+++..++++||+|||+|||||+|+|++.|++||.++
T Consensus 85 ~p~~~eg~Ls~~r~~lV~~~~la~~a~~lgL~~~l~~~~~e~~~~~~~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~ 164 (252)
T 1o0w_A 85 YPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADAFEALLAAIYLDQGYEKIKELFEQE 164 (252)
T ss_dssp CTTSCHHHHHHHHHHHTSHHHHHHHHHHTTHHHHCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCHHHHHHHHHHcCcHHhhccCchhhhcCCCCCccHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999877666666789999999999999999999999999999888
Q ss_pred h
Q 009571 290 F 290 (532)
Q Consensus 290 ~ 290 (532)
+
T Consensus 165 ~ 165 (252)
T 1o0w_A 165 F 165 (252)
T ss_dssp H
T ss_pred H
Confidence 6
No 15
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.97 E-value=3.7e-31 Score=262.03 Aligned_cols=139 Identities=24% Similarity=0.311 Sum_probs=127.9
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHHcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCCh
Q 009571 136 LLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESP 215 (532)
Q Consensus 136 l~~le~~LGY~F~~~~~~~~~~p~~~~~~LL~~ALTH~S~~~~~~~~~~~~yERLEFLGDaVL~lvvs~~Ly~~yP~~~e 215 (532)
+..++++|||+| + +.||.+||||+||.+.+ ....+|||||||||+||+++|+++||.+||+.++
T Consensus 7 l~~l~~~lgy~f-~-------------~~ll~~AlTH~S~~~~~--~~~~~nerLefLGDavL~~~v~~~L~~~~p~~~~ 70 (242)
T 2a11_A 7 RQPLLDALGVDL-P-------------DELLSLALTHRSYAYEN--GGLPTNERLEFLGDAVLGLTITDALFHRHPDRSE 70 (242)
T ss_dssp CHHHHHHHTSCC-C-------------HHHHHHHTBCHHHHHHT--TSCCCTHHHHHHHHHHHHHHHHHHHHHHCTTSCH
T ss_pred HHHHHHHHCCCC-C-------------HHHHHHHhCCcCccccC--CCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 467999999999 8 89999999999997542 2347999999999999999999999999999999
Q ss_pred hhHHHHHHHhhCcchHHHHHHHc---CCCcccCCCchhhhhcccCCCCchhhHHHHHHHHHHhhcChHHHHHHHHHHh
Q 009571 216 APMRERVFGLIGRRNLPKWIKAA---SLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF 290 (532)
Q Consensus 216 G~Lt~lRs~lVsN~~La~iA~~l---gL~~~I~~~~~~~~~~~~~~~KvLADvfEALIGAIylD~G~~~a~~~i~~~~ 290 (532)
|.|+.+|+.+|||++|+.+|+++ ||++||+.++++...+++..++++||+|||+|||||+|+|++.+++||.+++
T Consensus 71 g~Ls~~r~~lV~~~~la~~a~~l~~~gL~~~l~~~~~e~~~~~~~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~~ 148 (242)
T 2a11_A 71 GDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAIYLQHGMEKAREVILRLF 148 (242)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHSSSCSGGGCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCHHHHHHHHHHhhhhChHHHhhcCchhhhcCCCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999999999999999 9999999998876666666789999999999999999999999999998876
No 16
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora}
Probab=99.97 E-value=7.5e-31 Score=260.72 Aligned_cols=181 Identities=16% Similarity=0.190 Sum_probs=133.1
Q ss_pred CCchHHHHHHhcCcccccccccccccCCCCCccCCCChhhHH----HHHHHHHHHhCCC-CCCCCCCCCCCCCCChHHHH
Q 009571 92 LDDKKLVDRFLKSPQLSLKSFPLLSSCLPPSRLNNADQTWID----EYLLEAKQALGYS-LEPSDQLGDDNPAKHFDTLL 166 (532)
Q Consensus 92 ~~~~~l~~~~~~sp~~~l~~~~~~~s~lp~~~~~~~d~~~~~----~~l~~le~~LGY~-F~~~~~~~~~~p~~~~~~LL 166 (532)
-+|..+...+.++|-+...+. +....|.-.. ...|.. .....+|++|||+ |++ +.||
T Consensus 42 ~~~~~~~~~i~~~~~~~v~~~--~~~~~~~~~i---~~~~~~~~~~~~~~~lE~~lgY~~F~d-------------~~LL 103 (246)
T 3rv1_A 42 TAENTIDYTILNTPTLNVAKT--LLGNRYSLDL---IDLFQSHDFKDSNTDVDMFIKYPVVYD-------------ENLE 103 (246)
T ss_dssp TTCCHHHHHHHTSHHHHHHHH--HHHTTTTCCH---HHHHHHTTCCSSCCGGGGGCSSCCCSC-------------HHHH
T ss_pred hCCcHHHHHhcCCCchhhhhH--hhcccchhhH---HHHHHHcCCCcchHHHHHhcCCCCcCC-------------HHHH
Confidence 356678888888888876532 1122222111 111111 0123689999999 998 9999
Q ss_pred HHHHcCCCccccccc-----cCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHhhCcchHHHHHHHcCCC
Q 009571 167 YLAFQHPFCERNKAR-----HVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQ 241 (532)
Q Consensus 167 ~~ALTH~S~~~~~~~-----~~~~~yERLEFLGDaVL~lvvs~~Ly~~yP~~~eG~Lt~lRs~lVsN~~La~iA~~lgL~ 241 (532)
.+||||+||.++... ....+|||||||||+||+++++++||.+||+.++|.||.+|+.+|||.+|+.+|+++||+
T Consensus 104 ~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDaVL~l~vs~~L~~~~P~~~eG~Lt~lRs~lVsn~~La~iA~~lgL~ 183 (246)
T 3rv1_A 104 NLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFT 183 (246)
T ss_dssp HHTTCCCC--------------CCCSHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHSHHHHHHHHHHTTSH
T ss_pred HHHHcCCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHhCHHHHHHHHHHCCcH
Confidence 999999999764210 134689999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCchhhhh-cccCCCCchhhHHHHHHHHHHhhc---ChHHHHHHHHHHh
Q 009571 242 NLIFPFDEMDRL-IRKEREPPVKSVFWALFGAIYLCF---GFPEVYRVLFEVF 290 (532)
Q Consensus 242 ~~I~~~~~~~~~-~~~~~~KvLADvfEALIGAIylD~---G~~~a~~~i~~~~ 290 (532)
++|+++.+.... .+...++++||+|||+|||||+|+ |++.|++|+.+++
T Consensus 184 ~~l~~~~g~~~~~~~~~~~~ilAD~fEAlIGAIylD~~g~~l~~v~~~l~~L~ 236 (246)
T 3rv1_A 184 KRLQGNIATPTRVVKDKMSKRYADCVQAYIGALVIDRFGTEFLDIKEWLEELS 236 (246)
T ss_dssp HHHCSSCC-----------CHHHHHHHHHHHHHHHHHCSSTTHHHHHHHHHHT
T ss_pred HHHhhcCCHhhhccCcccccHHHHHHHHHHHHHhHcCCCCCHHHHHHHHHHHH
Confidence 999975332211 122468999999999999999998 4899999998887
No 17
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=99.96 E-value=1.3e-30 Score=270.24 Aligned_cols=184 Identities=16% Similarity=0.185 Sum_probs=139.4
Q ss_pred CCchHHHHHHhcCcccccccccccccCCCCCccCCCChhh-HHHHHHHHHHHhCCC-CCCCCCCCCCCCCCChHHHHHHH
Q 009571 92 LDDKKLVDRFLKSPQLSLKSFPLLSSCLPPSRLNNADQTW-IDEYLLEAKQALGYS-LEPSDQLGDDNPAKHFDTLLYLA 169 (532)
Q Consensus 92 ~~~~~l~~~~~~sp~~~l~~~~~~~s~lp~~~~~~~d~~~-~~~~l~~le~~LGY~-F~~~~~~~~~~p~~~~~~LL~~A 169 (532)
-+|..+...+.++|-+...+. +....|+-...+.-..| ++.....+|++|||+ |++ +.||.+|
T Consensus 42 ~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~i~~~~~~~~~~~~~~~lE~~igy~~F~d-------------~~LL~~A 106 (341)
T 3rv0_A 42 TAENTIDYTILNTPTLNVAKT--LLGNRYSLDLIDLFQSHDFKDSNTDVDMFIKYPVVYD-------------ENLENLA 106 (341)
T ss_dssp CCSSTHHHHHHTSHHHHHHHH--HHTTTTTCCHHHHHHHTTCCSSCCTTGGGCSSCCCSC-------------HHHHHHH
T ss_pred cCCcHHHHHhccCCccchhhh--hhccCccccHHHHHHHcCCCcchhHHHHhcCCCCcCC-------------HHHHHHH
Confidence 467788888888888876542 12222222111100000 011124689999999 998 9999999
Q ss_pred HcCCCccccccc-----cCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHhhCcchHHHHHHHcCCCccc
Q 009571 170 FQHPFCERNKAR-----HVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLI 244 (532)
Q Consensus 170 LTH~S~~~~~~~-----~~~~~yERLEFLGDaVL~lvvs~~Ly~~yP~~~eG~Lt~lRs~lVsN~~La~iA~~lgL~~~I 244 (532)
|||+||.+.... ....+|||||||||+||+++++++||.+||+.++|.||.+|+.+|||.+|+.+|+++||+++|
T Consensus 107 LTH~S~~~~~~~~~~~~~~~~~nERLEfLGDavL~l~vs~~L~~~~P~~~eG~Lt~lr~~lVs~~~La~iA~~lgL~~~l 186 (341)
T 3rv0_A 107 FMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRL 186 (341)
T ss_dssp HCCCCCC---CCSCHHHHGGGCTHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHSHHHHHHHHHHTTTTTTT
T ss_pred hcCcCccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHhCHHHHHHHHHHcCcHHHh
Confidence 999999764210 124689999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhh-cccCCCCchhhHHHHHHHHHHhhc---ChHHHHHHHHHHh
Q 009571 245 FPFDEMDRL-IRKEREPPVKSVFWALFGAIYLCF---GFPEVYRVLFEVF 290 (532)
Q Consensus 245 ~~~~~~~~~-~~~~~~KvLADvfEALIGAIylD~---G~~~a~~~i~~~~ 290 (532)
+++.+.... .+...++++||+|||+|||||+|+ |++.|++||.+++
T Consensus 187 ~~~~g~~~~~~~~~~~~ilaD~fEAlIGAIylD~~~~G~~~a~~fi~~l~ 236 (341)
T 3rv0_A 187 QGNIATPTRVVKDKMSKRYADCVEAYIGALVIDRFGTEFLDIKEWLEELS 236 (341)
T ss_dssp CCSSCCC----CCHHHHHHHHHHHHHHHHHHHHHCSSTTHHHHHHHHHHT
T ss_pred hhcCChhhhccCCccccHHHHHHHHHHHHHhhcCccCCHHHHHHHHHHHH
Confidence 975332211 111247899999999999999999 9999999999876
No 18
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=99.93 E-value=1.1e-26 Score=262.28 Aligned_cols=140 Identities=15% Similarity=0.120 Sum_probs=121.1
Q ss_pred HHHHHHHHHhCCCCCCC----------CC----CCCCCCCCChHHHHHHHHcCCCccccccccCCCCchHHHHHHHHHHH
Q 009571 134 EYLLEAKQALGYSLEPS----------DQ----LGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLE 199 (532)
Q Consensus 134 ~~l~~le~~LGY~F~~~----------~~----~~~~~p~~~~~~LL~~ALTH~S~~~~~~~~~~~~yERLEFLGDaVL~ 199 (532)
..+..+|++|||+|+++ .| .+.++ ....+.||.+||||+| |||||||||+||+
T Consensus 593 ~~~~~lE~~lgY~F~~~~~~~~~~~L~~~~l~~i~~~~-~~~~~~LL~~AlTH~S------------neRLEfLGDaVL~ 659 (756)
T 2qvw_A 593 KVLALYEKILAYESSGGSKHIAAQTVSRSLAVPIPSGT-IPFLIRLLQIALTPHV------------YQKLELLGDAFLK 659 (756)
T ss_dssp HHHHHHHHHHSSCCCCSSHHHHHHHHHHTTCSCCCSSC-HHHHHHHHHHHHSTGG------------GHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCCccCcchhhhHhhhhhhhcccccccc-ccccHHHHHHHhcCcc------------chHHHHHHHHHHH
Confidence 35789999999999961 00 00000 0001689999999998 8999999999999
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHHhhCcchHHHHHHHcC--CCcccCCCchhhhhcccCCCCchhhHHHHHHHHHHhhc
Q 009571 200 LAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAAS--LQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCF 277 (532)
Q Consensus 200 lvvs~~Ly~~yP~~~eG~Lt~lRs~lVsN~~La~iA~~lg--L~~~I~~~~~~~~~~~~~~~KvLADvfEALIGAIylD~ 277 (532)
++++++||.+||+.+||.||.+|+++|||++|+.+|+++| |++||+.++++.. ..+|++||+|||+|||||+|+
T Consensus 660 l~vs~~L~~~~p~~~eG~Lt~lrs~lV~~~~La~~a~~lg~~L~~~l~~~~~e~~----~~~kilaD~~EAliGAiylD~ 735 (756)
T 2qvw_A 660 CSLALHLHALHPTLTEGALTRMRQSAETNSVLGRLTKRFPSVVSEVIIESHPKIQ----PDSKVYGDTFEAILAAILLAC 735 (756)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHTTSHHHHHHHHHTSCTHHHHHHHHHSTTCC----TTCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHhCChHHHHHHHHhcccHHHHHhcCchhhc----CCccHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999 9999998876532 568999999999999999999
Q ss_pred ChHHHHHHHHHHh
Q 009571 278 GFPEVYRVLFEVF 290 (532)
Q Consensus 278 G~~~a~~~i~~~~ 290 (532)
|++.|++|+.+++
T Consensus 736 G~~~a~~~v~~~~ 748 (756)
T 2qvw_A 736 GEEAAGAFVREHV 748 (756)
T ss_dssp CHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999887
No 19
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1
Probab=99.93 E-value=1.9e-26 Score=210.31 Aligned_cols=106 Identities=11% Similarity=0.117 Sum_probs=99.4
Q ss_pred CccchhhchhhhhhhHHHHHHHHHhCCCCCCcchHHHHHHhhCcHHHHHHHHHc----CCh----hhHhcchhhhhhhhc
Q 009571 414 FCFERLEYVGQKIQDLVMAERLLMKHLDAPGHWLQEKHRRILMNKFCGRYLREK----NLH----RYMIYSEQVQDAYEH 485 (532)
Q Consensus 414 ~~~ERLEFLGDaVL~l~vs~~L~~~~p~~~eG~Lt~~rs~lV~~~~la~~a~~l----~L~----~~l~~g~~~~~~~~~ 485 (532)
.+.|||||||||||+++|++|||.+ |+.+||+||++|+++||.++++.+++++ +|+ +|++.|+++...+
T Consensus 10 ~~~erLefLGDAVlel~vr~~L~~~-~~~~eg~L~k~r~~~V~a~aqa~~~~~l~~~~~L~eeE~~~~r~Grn~~~~~-- 86 (138)
T 1u61_A 10 LNSLALAYMGDAVYEQYIRYHLLQK-GKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNANSGT-- 86 (138)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHH-CCSCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHTCCCSSC--
T ss_pred cCHHHHHHhhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHcCHHHHHHHHHHhhcccCCChHHHHHhhcCCCcccCC--
Confidence 5789999999999999999999999 8999999999999999999999999999 999 7999999986544
Q ss_pred cccCCCch----HHhHHHHHHHHHHhhCCchHHHHHHHHhcc
Q 009571 486 NRRLRNPS----TTAVQQALHGLAYTVYGKPDVRRLMFEVFD 523 (532)
Q Consensus 486 ~~~~~~~~----l~d~~EAliGAiYLd~G~~~~~~~v~~~~~ 523 (532)
++.+.++ ++|+|||||||||||.|++.+++||.++|.
T Consensus 87 -~~k~~si~~Yr~A~~fEALiGalYLd~g~er~~~~i~~~~~ 127 (138)
T 1u61_A 87 -VPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKAIA 127 (138)
T ss_dssp -CCTTCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CCCCCchhhhhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6788899 999999999999999999999999998884
No 20
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=99.89 E-value=8.6e-24 Score=192.55 Aligned_cols=105 Identities=11% Similarity=0.069 Sum_probs=90.8
Q ss_pred CccchhhchhhhhhhHHHHHHHHHhCCCCCCcchHHHHHHhhCcHHHHHHHHHcC--Ch----hhHhcchhhhhhhhccc
Q 009571 414 FCFERLEYVGQKIQDLVMAERLLMKHLDAPGHWLQEKHRRILMNKFCGRYLREKN--LH----RYMIYSEQVQDAYEHNR 487 (532)
Q Consensus 414 ~~~ERLEFLGDaVL~l~vs~~L~~~~p~~~eG~Lt~~rs~lV~~~~la~~a~~l~--L~----~~l~~g~~~~~~~~~~~ 487 (532)
.|.+|||||||||++++|++|||.+ |+ +||+|+++|+++||.+++|.++++++ |+ .+++.|+++...+ +
T Consensus 13 ~~~~~LefLGDAVleL~vr~~L~~~-~~-~~g~L~k~~~~~V~a~aqa~~~~~l~~~Lte~E~~~~rrGrna~~~~---~ 87 (137)
T 2gsl_A 13 YSGLELAFLGDAIWELEIRKYYLQF-GY-NIPTLNKYVKAKVNAKYQSLIYKKIINDLDEEFKVIGKRAKNSNIKT---F 87 (137)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTS-CB-CHHHHHHHHHHHHSHHHHHHHHHHHGGGSCHHHHHHHHHHHC--CCS---C
T ss_pred cCHHHHHHhhHHHHHHHHHHHHHHC-CC-CHHHHHHHHHHHhCHHHHHHHHHHHHHHhCHHHHHHHHhcccccCCC---C
Confidence 4789999999999999999999998 88 99999999999999999999999996 66 5666666543221 4
Q ss_pred cCCCch----HHhHHHHHHHHHHhhCCchHHHHHHHHhcc
Q 009571 488 RLRNPS----TTAVQQALHGLAYTVYGKPDVRRLMFEVFD 523 (532)
Q Consensus 488 ~~~~~~----l~d~~EAliGAiYLd~G~~~~~~~v~~~~~ 523 (532)
+.+.++ ++|+|||||||+|||+|++.+++|+..++.
T Consensus 88 ~k~~si~~Y~~At~fEALiGaLYLd~~~erl~~ll~~~~~ 127 (137)
T 2gsl_A 88 PRSCTVMEYKEATALEAIIGAMYLLKKEEEIKKIINIVIK 127 (137)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHhhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 556774 999999999999999999999999998884
No 21
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1
Probab=99.83 E-value=1.1e-20 Score=172.29 Aligned_cols=106 Identities=13% Similarity=0.133 Sum_probs=97.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHhhCcchHHHHHHHc----CCC----cccCCCchhhhhcc
Q 009571 184 RAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAA----SLQ----NLIFPFDEMDRLIR 255 (532)
Q Consensus 184 ~~~yERLEFLGDaVL~lvvs~~Ly~~yP~~~eG~Lt~lRs~lVsN~~La~iA~~l----gL~----~~I~~~~~~~~~~~ 255 (532)
..|.+||||||||||+++|++|||.+ |..++|.||++|+++||.+.++.+++++ +|. .+++.+++....++
T Consensus 9 ~~~~erLefLGDAVlel~vr~~L~~~-~~~~eg~L~k~r~~~V~a~aqa~~~~~l~~~~~L~eeE~~~~r~Grn~~~~~~ 87 (138)
T 1u61_A 9 QLNSLALAYMGDAVYEQYIRYHLLQK-GKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNANSGTV 87 (138)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHH-CCSCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHTCCCSSCC
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHcCHHHHHHHHHHhhcccCCChHHHHHhhcCCCcccCCC
Confidence 46899999999999999999999999 8889999999999999999999999999 998 78988887655445
Q ss_pred cCCCCc----hhhHHHHHHHHHHhhcChHHHHHHHHHHh
Q 009571 256 KEREPP----VKSVFWALFGAIYLCFGFPEVYRVLFEVF 290 (532)
Q Consensus 256 ~~~~Kv----LADvfEALIGAIylD~G~~~a~~~i~~~~ 290 (532)
+.+..+ +||+|||+|||+|+|.|++.+..|+...+
T Consensus 88 ~k~~si~~Yr~A~~fEALiGalYLd~g~er~~~~i~~~~ 126 (138)
T 1u61_A 88 PKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKAI 126 (138)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCchhhhhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566788 99999999999999999999999998776
No 22
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=99.75 E-value=1.2e-18 Score=158.72 Aligned_cols=106 Identities=17% Similarity=0.141 Sum_probs=89.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHhhCcchHHHHHHHcC--CC----cccCCCchhhhhcccC
Q 009571 184 RAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAAS--LQ----NLIFPFDEMDRLIRKE 257 (532)
Q Consensus 184 ~~~yERLEFLGDaVL~lvvs~~Ly~~yP~~~eG~Lt~lRs~lVsN~~La~iA~~lg--L~----~~I~~~~~~~~~~~~~ 257 (532)
..|.+|||||||||++++|+++||.. |. ++|.|+++|+++||.+.++.++++++ |. .+++.+.+........
T Consensus 12 ~~~~~~LefLGDAVleL~vr~~L~~~-~~-~~g~L~k~~~~~V~a~aqa~~~~~l~~~Lte~E~~~~rrGrna~~~~~~k 89 (137)
T 2gsl_A 12 DYSGLELAFLGDAIWELEIRKYYLQF-GY-NIPTLNKYVKAKVNAKYQSLIYKKIINDLDEEFKVIGKRAKNSNIKTFPR 89 (137)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTS-CB-CHHHHHHHHHHHHSHHHHHHHHHHHGGGSCHHHHHHHHHHHC--CCSCCS
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHC-CC-CHHHHHHHHHHHhCHHHHHHHHHHHHHHhCHHHHHHHHhcccccCCCCCC
Confidence 46899999999999999999999998 88 99999999999999999999999996 65 5555555433222233
Q ss_pred CCCc----hhhHHHHHHHHHHhhcChHHHHHHHHHHhC
Q 009571 258 REPP----VKSVFWALFGAIYLCFGFPEVYRVLFEVFG 291 (532)
Q Consensus 258 ~~Kv----LADvfEALIGAIylD~G~~~a~~~i~~~~g 291 (532)
+..+ +||.|||+|||+|+|+|++.+..|+...+.
T Consensus 90 ~~si~~Y~~At~fEALiGaLYLd~~~erl~~ll~~~~~ 127 (137)
T 2gsl_A 90 SCTVMEYKEATALEAIIGAMYLLKKEEEIKKIINIVIK 127 (137)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCChHHHHHhhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4554 999999999999999999999999988763
No 23
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=78.11 E-value=10 Score=32.93 Aligned_cols=88 Identities=13% Similarity=0.078 Sum_probs=62.2
Q ss_pred chhhchhhhhhhHHHHHHHHH--hCCCCCCcchHHHHHHhhCcHHHHHHHHHcCChhhHhcchhhhhhhhccccCCCchH
Q 009571 417 ERLEYVGQKIQDLVMAERLLM--KHLDAPGHWLQEKHRRILMNKFCGRYLREKNLHRYMIYSEQVQDAYEHNRRLRNPST 494 (532)
Q Consensus 417 ERLEFLGDaVL~l~vs~~L~~--~~p~~~eG~Lt~~rs~lV~~~~la~~a~~l~L~~~l~~g~~~~~~~~~~~~~~~~~l 494 (532)
--|-=+||+.++++.|--|-+ -+|... -|-|.+|+.....-||.+.+ . ... .-.-
T Consensus 13 K~LakfGDSLvNfl~SlALse~lG~Ptg~----------rVPnaSLaiale~agL~~~~--p-R~D----------Kh~k 69 (133)
T 1ztd_A 13 KGLAKFGDSLINFLYSLALTEFLGKPTGD----------RVPNASLAIALELTGLSKNL--R-RVD----------KHAK 69 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCC----------CCCHHHHHHHHHHHTGGGGC--C-GGG----------TTCH
T ss_pred chHHHHhHHHHHHHHHHHHHHHhCCCCCC----------CCCChHHHHHHHHhhhhhcC--C-ccc----------ccCc
Confidence 467779999999998877643 344322 37888999887777887765 1 111 1234
Q ss_pred HhHHHHHHHHHHhhCCc--hHHHHHHHHhcccccc
Q 009571 495 TAVQQALHGLAYTVYGK--PDVRRLMFEVFDFEQI 527 (532)
Q Consensus 495 ~d~~EAliGAiYLd~G~--~~~~~~v~~~~~~~~~ 527 (532)
+|+.||+|+--+|.+-+ +.+-+++..-|...-+
T Consensus 70 Gd~aEA~iAyAWleG~is~eEaveilk~nl~~dv~ 104 (133)
T 1ztd_A 70 GDYAEALIAKAWLMGLISEREAVEIIKKNLYPEVL 104 (133)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHTTCCGGGG
T ss_pred cHHHHHHHHHHHHhccccHHHHHHHHHhcCcHhhc
Confidence 79999999999998764 6777788777754433
No 24
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=76.80 E-value=10 Score=32.95 Aligned_cols=86 Identities=12% Similarity=0.108 Sum_probs=62.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHH--hhCCCCChhhHHHHHHHhhCcchHHHHHHHcCCCcccCCCchhhhhcccCCCCch
Q 009571 185 AGHSRLCFLGQFVLELAFCEFFL--QRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPV 262 (532)
Q Consensus 185 ~~yERLEFLGDaVL~lvvs~~Ly--~~yP~~~eG~Lt~lRs~lVsN~~La~iA~~lgL~~~I~~~~~~~~~~~~~~~KvL 262 (532)
..-.-|.-+||++++++.+--|- --+|.-. -|-|.+|+..-...||...+ +..+ ...-
T Consensus 10 ~tdK~LakfGDSLvNfl~SlALse~lG~Ptg~----------rVPnaSLaiale~agL~~~~---pR~D-------Kh~k 69 (133)
T 1ztd_A 10 EIDKGLAKFGDSLINFLYSLALTEFLGKPTGD----------RVPNASLAIALELTGLSKNL---RRVD-------KHAK 69 (133)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTSCCCC----------CCCHHHHHHHHHHHTGGGGC---CGGG-------TTCH
T ss_pred hhcchHHHHhHHHHHHHHHHHHHHHhCCCCCC----------CCCChHHHHHHHHhhhhhcC---Cccc-------ccCc
Confidence 34567999999999999888774 4566532 36778888877888888877 2111 2457
Q ss_pred hhHHHHHHHHHHhhcCh--HHHHHHHHHHh
Q 009571 263 KSVFWALFGAIYLCFGF--PEVYRVLFEVF 290 (532)
Q Consensus 263 ADvfEALIGAIylD~G~--~~a~~~i~~~~ 290 (532)
+|+.||+|+=.|+.+-+ +++..++.+.+
T Consensus 70 Gd~aEA~iAyAWleG~is~eEaveilk~nl 99 (133)
T 1ztd_A 70 GDYAEALIAKAWLMGLISEREAVEIIKKNL 99 (133)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHhccccHHHHHHHHHhcC
Confidence 89999999999998854 46666665544
No 25
>1v18_B APC protein, adenomatous polyposis coli; signaling protein, signalling complex, WNT signal, beta-catenin degradation complex, cell adhesion; HET: SEP; 2.1A {Homo sapiens}
Probab=26.83 E-value=24 Score=25.61 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=14.8
Q ss_pred CCCCccccccccCCCccccchh
Q 009571 10 LVSDNISFSSAISPFPLQSSLK 31 (532)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~ 31 (532)
+.+.+||+.||+|-+|++-++.
T Consensus 14 ~~~~~FScaSSLSAL~l~E~yi 35 (47)
T 1v18_B 14 STPDGFSCSSSLSALSLDEPFI 35 (47)
T ss_dssp SCCCCCC----CCCCCCSSCCC
T ss_pred cCCCCccchhccccccccchhh
Confidence 3678999999999999987765
No 26
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=23.49 E-value=38 Score=28.58 Aligned_cols=45 Identities=7% Similarity=-0.051 Sum_probs=34.0
Q ss_pred HHHHHHHHHhC---CCCCCcchHHHHHHhhCcHHHHHHHHHcCChhhHhc
Q 009571 429 LVMAERLLMKH---LDAPGHWLQEKHRRILMNKFCGRYLREKNLHRYMIY 475 (532)
Q Consensus 429 l~vs~~L~~~~---p~~~eG~Lt~~rs~lV~~~~la~~a~~l~L~~~l~~ 475 (532)
.-|++|+..+. +.++-.+|. ...-|+..+..+.|++||+..|--+
T Consensus 20 ~~ia~yil~~~~~~~~~si~elA--~~~~vS~aTv~Rf~kkLGf~gf~ef 67 (107)
T 3iwf_A 20 KKIAQFILNYPHKVVNMTSQEIA--NQLETSSTSIIRLSKKVTPGGFNEL 67 (107)
T ss_dssp HHHHHHHHHCHHHHTTCCHHHHH--HHHTSCHHHHHHHHHHHSTTHHHHH
T ss_pred HHHHHHHHhCHHHHHHCCHHHHH--HHHCCCHHHHHHHHHHhCCCCHHHH
Confidence 56777877654 345555554 4688999999999999999988644
Done!