Query 009572
Match_columns 532
No_of_seqs 321 out of 1368
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 08:12:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009572.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009572hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 100.0 9.2E-46 3.1E-50 373.8 16.4 256 226-526 5-275 (276)
2 1g9r_A Glycosyl transferase; a 100.0 2.8E-41 9.7E-46 345.6 18.8 250 227-520 1-269 (311)
3 1ll2_A Glycogenin-1; protein-s 99.9 4.7E-26 1.6E-30 235.7 14.9 226 225-521 3-255 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 99.9 1E-24 3.5E-29 219.0 11.4 207 229-506 8-224 (263)
5 3v1a_A Computational design, M 73.3 7 0.00024 28.9 5.4 38 78-115 6-43 (48)
6 1yzm_A FYVE-finger-containing 68.2 9.9 0.00034 28.4 5.3 40 77-116 6-45 (51)
7 1z0k_B FYVE-finger-containing 64.9 11 0.00038 29.9 5.3 40 77-116 24-63 (69)
8 1z0j_B FYVE-finger-containing 63.0 15 0.00053 28.2 5.6 41 77-117 13-53 (59)
9 1fo8_A Alpha-1,3-mannosyl-glyc 37.7 1.8E+02 0.0061 29.5 10.6 41 334-374 80-122 (343)
10 3fxd_A Protein ICMQ; helix bun 22.6 94 0.0032 23.6 3.9 40 125-167 5-44 (57)
11 2p6w_A VP54, putative glycosyl 21.5 2.2E+02 0.0075 27.0 7.1 18 348-365 69-86 (213)
12 4e61_A Protein BIM1; EB1-like 21.0 2E+02 0.0067 24.5 6.1 60 103-167 22-101 (106)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=100.00 E-value=9.2e-46 Score=373.81 Aligned_cols=256 Identities=18% Similarity=0.203 Sum_probs=189.2
Q ss_pred ceeEEEEeCC--CccchhhHHHHhhhCCCCCcEEEEEEeCcccHHHHHHHHHhccCCCceEEEeeeccchhccccccchh
Q 009572 226 LYHFCVFSDN--ILATSVVVNSTASNSKNPDMIVFHLVTDEINYAAMKAWFAINSFRGVTVEVQKFEDFKWLNASYVPVL 303 (532)
Q Consensus 226 ~~hIa~~sDn--vl~~sV~I~Sil~N~~~p~~i~FHIvtd~is~~~~~~wf~~n~~~~a~I~v~~i~~f~wl~~~y~p~l 303 (532)
.+|||+++|+ +.+++|+|+|++.|+++ ++++|||++++++.+..+.+...-...+.+|++..+.+ +
T Consensus 5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~-~---------- 72 (276)
T 3tzt_A 5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATD-D---------- 72 (276)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC-------------
T ss_pred eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCH-H----------
Confidence 4899999997 78999999999999986 57999999999999887665443333345666554321 0
Q ss_pred hhccccCcceeeecCCCCCCCCCcccCCCCcchhhhhHHHhhhhhcCC-CCeEEEEecceeeccCchHHhccCCCCCeeE
Q 009572 304 KQLQDSETQSYYFSGNSDGGRTPIKFRNPKYLSMLNHLRFYIPEVFPA-LKKVVFLDDDVVVQKDLSALFSINLNGNVNG 382 (532)
Q Consensus 304 ~ql~~~~~~~~~F~~~~~~~~~~lk~r~~~~lS~~ty~Rf~lPellP~-ldKVLYLD~DvIV~~DLseLw~iDL~g~~ia 382 (532)
.|.. .+ ..+++|..+|+||++|+++|+ ++||||||+|+||++||++||++|++|+.+|
T Consensus 73 -----------~~~~------~~----~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~a 131 (276)
T 3tzt_A 73 -----------LFSF------AK----VTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILA 131 (276)
T ss_dssp --------------------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEE
T ss_pred -----------HHhc------Cc----cccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEE
Confidence 0110 11 124688999999999999995 9999999999999999999999999999999
Q ss_pred eeeccchh-hhhhhcccCCCCccccccCCCCCCccccceeeeechHHHHhhHHHHHHHHHHhcCCcccccCCCCChhhhh
Q 009572 383 AVETCMET-FHRYHKYLNYSHPLIREHFDPDACGWAFGMNIFDLVEWRKRNVTGIYHYWQEKNVDRTLWKLGTLPPGLLT 461 (532)
Q Consensus 383 AV~Dc~~~-~~~~~~~ln~s~p~i~~~~~~~~~yfNsGVlLiNL~~wR~~nit~~~~~~~~~~~d~~l~~~~~L~~~n~~ 461 (532)
||+||... +.+....+ +++...||||||||||||++||+.++++++++|++.++... ..++|+++|.+
T Consensus 132 av~d~~~~~~~~~~~~~---------~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~~--~~~DQd~LN~~ 200 (276)
T 3tzt_A 132 AASHTGKTDMANNVNRI---------RLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMNL--LLPDQDILNAM 200 (276)
T ss_dssp EEEC-----------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC----------CHHHHHH
T ss_pred EEEecccchHHHHHHHh---------cCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhccccc--cCCChhHHHHH
Confidence 99999743 11111111 24444699999999999999999999999999998766432 34678999999
Q ss_pred ccCceeecCC-ccccccCCCC-C--------Cc-hhhcCCCeEEEccCCCCCcccCCCCCCHHHHHHHHhcCCccc
Q 009572 462 FYGLTEPLNP-AWHVLGLGYT-N--------VD-PQLIEKGAVLHYNGNSKPWLKIGMEKYKPLWEKYVDYNHPQL 526 (532)
Q Consensus 462 F~~~i~~L~~-~WN~~~lgy~-~--------~~-~~~~~~~~IIHy~G~~KPW~~~~~~~y~~~W~kY~~~t~pfl 526 (532)
|.|++++||. +||++.. +. . .. .+..++|+||||+|+.|||...+.++|+++||+|++..+++|
T Consensus 201 f~~~~~~Lp~~~wN~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~w~~Y~~~~~~~~ 275 (276)
T 3tzt_A 201 YGDRIYPLDDLIYNYDAR-NYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTSLYKHYMSLTKRYL 275 (276)
T ss_dssp HGGGEEEEEHHHHSEETT-CHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHHHHHHHHHHHHHHT
T ss_pred HhCCEEECCchheeeecc-cchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHHHHHHHHHHHHHhh
Confidence 9999999998 9999863 22 0 01 235678999999999999999999999999999999887765
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=100.00 E-value=2.8e-41 Score=345.62 Aligned_cols=250 Identities=21% Similarity=0.276 Sum_probs=191.7
Q ss_pred eeEEEEeCC--CccchhhHHHH-hhhCCCCCcEEEEEEeCcccHHHHHHHHHhccCCCceEEEeeeccchhccccccchh
Q 009572 227 YHFCVFSDN--ILATSVVVNST-ASNSKNPDMIVFHLVTDEINYAAMKAWFAINSFRGVTVEVQKFEDFKWLNASYVPVL 303 (532)
Q Consensus 227 ~hIa~~sDn--vl~~sV~I~Si-l~N~~~p~~i~FHIvtd~is~~~~~~wf~~n~~~~a~I~v~~i~~f~wl~~~y~p~l 303 (532)
||||+++|+ +.+++|+++|+ +.|++. +++|||++++++.+..+.+-......+.+|++..+++ +.
T Consensus 1 m~I~~~~d~~Y~~~~~vli~Sl~l~~~~~--~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~---------~~- 68 (311)
T 1g9r_A 1 MDIVFAADDNYAAYLCVAAKSVEAAHPDT--EIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNP---------ED- 68 (311)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTCTTS--CCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCG---------GG-
T ss_pred CeEEEECCHhHHHHHHHHHHHHHHHcCCC--CceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcCH---------HH-
Confidence 699999997 78999999999 998754 6999999999999887665433222245555543321 00
Q ss_pred hhccccCcceeeecCCCCCCCCCcccCCCCcchhhhhHHHhhhhhcCCCCeEEEEecceeeccCchHHhccCCCCCeeEe
Q 009572 304 KQLQDSETQSYYFSGNSDGGRTPIKFRNPKYLSMLNHLRFYIPEVFPALKKVVFLDDDVVVQKDLSALFSINLNGNVNGA 383 (532)
Q Consensus 304 ~ql~~~~~~~~~F~~~~~~~~~~lk~r~~~~lS~~ty~Rf~lPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaA 383 (532)
|.. .+. ..+++|..+|+||++|++||+++||||||+|+||++||++||++|++|+++||
T Consensus 69 ------------~~~------~~~---~~~~~s~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aa 127 (311)
T 1g9r_A 69 ------------FAG------FPL---NIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGA 127 (311)
T ss_dssp ------------GTT------SCC---CCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEE
T ss_pred ------------Hhc------Ccc---ccccCCHHHHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCCCCcEEEE
Confidence 000 111 13578899999999999999999999999999999999999999999999999
Q ss_pred eeccchhh-hhhhcccCCCCccccccCCCCCCccccceeeeechHHHHhhHHHHHHHHHHhcCCcccccCCCCChhhhhc
Q 009572 384 VETCMETF-HRYHKYLNYSHPLIREHFDPDACGWAFGMNIFDLVEWRKRNVTGIYHYWQEKNVDRTLWKLGTLPPGLLTF 462 (532)
Q Consensus 384 V~Dc~~~~-~~~~~~ln~s~p~i~~~~~~~~~yfNsGVlLiNL~~wR~~nit~~~~~~~~~~~d~~l~~~~~L~~~n~~F 462 (532)
|+||.... ..+...++ +++..+||||||||||+++||+.++++++.+|++.+.... ..++|+.+|.+|
T Consensus 128 v~d~~~~~~~~~~~~~~---------~~~~~~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~~~~--~~~DQd~lN~~f 196 (311)
T 1g9r_A 128 SIDLFVERQEGYKQKIG---------MADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVM--QYQDQDILNGLF 196 (311)
T ss_dssp EECHHHHTSTTHHHHTT---------CCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTC--SSHHHHHHHHHH
T ss_pred EeccchhhhHHHHHhcC---------CCCCCceEeeeeeeeeHHHHHhcchHHHHHHHHHhccCcC--ccCCcCHHHHHH
Confidence 99986421 11222222 3445789999999999999999999999999998766443 345677889999
Q ss_pred cCceeecCCccccccCCCC---C----C---c-----hhhcCCCeEEEccCCCCCcccCCCCCCHHHHHHHHh
Q 009572 463 YGLTEPLNPAWHVLGLGYT---N----V---D-----PQLIEKGAVLHYNGNSKPWLKIGMEKYKPLWEKYVD 520 (532)
Q Consensus 463 ~~~i~~L~~~WN~~~lgy~---~----~---~-----~~~~~~~~IIHy~G~~KPW~~~~~~~y~~~W~kY~~ 520 (532)
.|++..||.+||++...+. . . . ....++++||||+|+.|||...+.+++.++|.++.+
T Consensus 197 ~~~~~~Lp~~wN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~~~~~~~ 269 (311)
T 1g9r_A 197 KGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAG 269 (311)
T ss_dssp TTSEEEECGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSSSCCSTTTHHHHHHHH
T ss_pred cCCEEEcChhhccCcchhhHHhhhcccccchhhhhHHhhccCCCEEEEeCCcCCCCCCCCCCccHHHHHHHHH
Confidence 9999999999999853211 0 0 0 122357899999999999999998888877777664
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=99.93 E-value=4.7e-26 Score=235.72 Aligned_cols=226 Identities=13% Similarity=0.153 Sum_probs=154.8
Q ss_pred CceeEEEEeCC--CccchhhHHHHhhhCCCCCcEEEEEEeCcccHHHHHHHHHhccCCCceEEEeeeccchhccccccch
Q 009572 225 NLYHFCVFSDN--ILATSVVVNSTASNSKNPDMIVFHLVTDEINYAAMKAWFAINSFRGVTVEVQKFEDFKWLNASYVPV 302 (532)
Q Consensus 225 ~~~hIa~~sDn--vl~~sV~I~Sil~N~~~p~~i~FHIvtd~is~~~~~~wf~~n~~~~a~I~v~~i~~f~wl~~~y~p~ 302 (532)
...+|++++|+ +.++.|++.|+..|+++. +++| +++++++.+..+.+.... . .+..++.+ ...
T Consensus 3 ~~a~vt~~~d~~Yl~~a~vl~~SL~~~~s~~-~l~v-lv~~~is~~~~~~L~~~~----~--~v~~v~~l---~~~---- 67 (333)
T 1ll2_A 3 DQAFVTLTTNDAYAKGALVLGSSLKQHRTSR-RLAV-LTTPQVSDTMRKALEIVF----D--EVITVDIL---DSG---- 67 (333)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTTCCS-EEEE-EECTTSCHHHHHHHHHHC----S--EEEECCTT---STT----
T ss_pred ceEEEEEEeCHHHHHHHHHHHHHHHHhCCCC-CEEE-EEcCCCCHHHHHHHHHhC----C--EEEEEeec---CCc----
Confidence 35678888876 789999999999998663 5666 678889887766543321 1 12222211 000
Q ss_pred hhhccccCcceeeecCCCCCCCCCcccCCCCcchhhhhHHHhhhhhcCCCCeEEEEecceeeccCchHHhccCCCCCeeE
Q 009572 303 LKQLQDSETQSYYFSGNSDGGRTPIKFRNPKYLSMLNHLRFYIPEVFPALKKVVFLDDDVVVQKDLSALFSINLNGNVNG 382 (532)
Q Consensus 303 l~ql~~~~~~~~~F~~~~~~~~~~lk~r~~~~lS~~ty~Rf~lPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~ia 382 (532)
.. .+++.. +...+..+|+||++|++ ++++||||||+|+||++||++||+++ .+|
T Consensus 68 ------------------~~--~~~~~~-~~~~~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~~~----~~a 121 (333)
T 1ll2_A 68 ------------------DS--AHLTLM-KRPELGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFERE----ELS 121 (333)
T ss_dssp ------------------ST--THHHHH-HCGGGHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGGSC----SSE
T ss_pred ------------------ch--hhcccc-cccchHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhCCC----cee
Confidence 00 000000 01123578999999996 77999999999999999999999986 578
Q ss_pred eeeccchhhhhhhcccCCCCccccccCCCCCCccccceeeeechHHHHhhHHHHHHHHHHhcCCcccccCCCCChhhhhc
Q 009572 383 AVETCMETFHRYHKYLNYSHPLIREHFDPDACGWAFGMNIFDLVEWRKRNVTGIYHYWQEKNVDRTLWKLGTLPPGLLTF 462 (532)
Q Consensus 383 AV~Dc~~~~~~~~~~ln~s~p~i~~~~~~~~~yfNsGVlLiNL~~wR~~nit~~~~~~~~~~~d~~l~~~~~L~~~n~~F 462 (532)
||+|++ . .+||||||||||++. ++.+++.+++..++ .+..++|+.+|.+|
T Consensus 122 Av~d~~--------------------~---~~~fNsGvmlin~~~----~~~~~l~~~~~~~~---~~~~~DQ~~LN~~f 171 (333)
T 1ll2_A 122 AAPDPG--------------------W---PDCFNSGVFVYQPSV----ETYNQLLHVASEQG---SFDGGDQGLLNTFF 171 (333)
T ss_dssp EEECSS--------------------S---TTSEEEEEEEECCCH----HHHHHHHHHHHHTC---CTTSSHHHHHHHHT
T ss_pred EEecCC--------------------C---CcceeeeEEEEeCCH----HHHHHHHHHHHhcC---CCCCCCHHHHHHHH
Confidence 887742 1 258999999999863 33455556655543 34557889999999
Q ss_pred cCce-----eecCCccccccCC-CCCCc--hhhcCCCeEEEccCCCCCcccCCCC-----------------CCHHHHHH
Q 009572 463 YGLT-----EPLNPAWHVLGLG-YTNVD--PQLIEKGAVLHYNGNSKPWLKIGME-----------------KYKPLWEK 517 (532)
Q Consensus 463 ~~~i-----~~L~~~WN~~~lg-y~~~~--~~~~~~~~IIHy~G~~KPW~~~~~~-----------------~y~~~W~k 517 (532)
.+.+ ..||.+||++... |.... ....++|+||||+|..|||...+.+ .+.+.||.
T Consensus 172 ~~~~~~~~~~~Lp~~yN~~~~~~~~~~p~~~~~~~~~~IiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~ 251 (333)
T 1ll2_A 172 NSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWD 251 (333)
T ss_dssp TTTTTSCGGGBCCGGGSEETTHHHHTHHHHHHHGGGCSEEECCSSCCGGGSCEETTTTEEC--------CCHHHHHHHHH
T ss_pred HhhcccCccccCCcHHhcccccchhccHHHHhhcCCCEEEEECCCCCCCCCCCCCCccccccccccccccHHHHHHHHHH
Confidence 8654 7899999998542 22111 1245789999999999999886432 34578998
Q ss_pred HHhc
Q 009572 518 YVDY 521 (532)
Q Consensus 518 Y~~~ 521 (532)
+++.
T Consensus 252 ~~~~ 255 (333)
T 1ll2_A 252 IFTT 255 (333)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7764
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=99.91 E-value=1e-24 Score=218.98 Aligned_cols=207 Identities=15% Similarity=0.164 Sum_probs=141.7
Q ss_pred EEEEeCC--CccchhhHHHHhhhCCCCCcEEEEEEeCcccHHHHHHHHHhccCCCceEEEeeeccchhccccccchhhhc
Q 009572 229 FCVFSDN--ILATSVVVNSTASNSKNPDMIVFHLVTDEINYAAMKAWFAINSFRGVTVEVQKFEDFKWLNASYVPVLKQL 306 (532)
Q Consensus 229 Ia~~sDn--vl~~sV~I~Sil~N~~~p~~i~FHIvtd~is~~~~~~wf~~n~~~~a~I~v~~i~~f~wl~~~y~p~l~ql 306 (532)
+.+++|+ +.++.|++.|+..++++- ++++ +++++++.+..+.+-.. +. ++..++.++ ......++.
T Consensus 8 vTl~td~~Yl~ga~vL~~SL~~~~s~~-~lvv-Lvt~~vs~~~~~~L~~~----~~--~vi~V~~l~---~~~~~~~~~- 75 (263)
T 3u2u_A 8 VTLTTNDAYAKGALVLGSSLKQHRTTR-RLVV-LATPQVSDSMRKVLETV----FD--EVIMVDVLD---SGDSAHLTL- 75 (263)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTCCS-EEEE-EECTTSCHHHHHHHHHH----SS--EEEECCCCC---CCCHHHHHH-
T ss_pred EEEEECHHHHHHHHHHHHHHHHhCCCC-CEEE-EecCCCCHHHHHHHHHc----CC--eEEEeeecC---Ccchhhhhh-
Confidence 4556665 789999999999987762 4444 66788988776654322 11 222222110 000000000
Q ss_pred cccCcceeeecCCCCCCCCCcccCCCCcchhhhhHHHhhhhhcCCCCeEEEEecceeeccCchHHhccCCCCCeeEeeec
Q 009572 307 QDSETQSYYFSGNSDGGRTPIKFRNPKYLSMLNHLRFYIPEVFPALKKVVFLDDDVVVQKDLSALFSINLNGNVNGAVET 386 (532)
Q Consensus 307 ~~~~~~~~~F~~~~~~~~~~lk~r~~~~lS~~ty~Rf~lPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~D 386 (532)
+..+. + ..+|.|++++++.+ ++||||||+|++|++||++||+++ .+|||+|
T Consensus 76 ----------------------~~rp~-~-~~~~~kl~~~~l~~-~~~vlylD~D~~v~~~~~~Lf~~~----~~aA~~d 126 (263)
T 3u2u_A 76 ----------------------MKRPE-L-GVTLTKLHCWSLTQ-YSKCVFMDADTLVLANIDDLFDRE----ELSAAPD 126 (263)
T ss_dssp ----------------------TTCTT-G-GGGGGGGGGGGCTT-CSEEEEECTTEEECSCCGGGGGSC----SSEEEEC
T ss_pred ----------------------hcCcc-h-hHHhHHHHhccccC-cceEEEEcCCEeeccCHHHHhCCC----cceEecc
Confidence 00122 2 36889999999875 899999999999999999999987 5788877
Q ss_pred cchhhhhhhcccCCCCccccccCCCCCCccccceeeeechHHHHhhHHHHHHHHHHhcCCcccccCCCCChhhhhccC--
Q 009572 387 CMETFHRYHKYLNYSHPLIREHFDPDACGWAFGMNIFDLVEWRKRNVTGIYHYWQEKNVDRTLWKLGTLPPGLLTFYG-- 464 (532)
Q Consensus 387 c~~~~~~~~~~ln~s~p~i~~~~~~~~~yfNsGVlLiNL~~wR~~nit~~~~~~~~~~~d~~l~~~~~L~~~n~~F~~-- 464 (532)
.+ . ..||||||||||+++ ++.+++.++++..+ .+..++|+.+|.+|.+
T Consensus 127 ~~--------------------~---~~~fNsGv~li~p~~----~~~~~l~~~~~~~~---~~~~~DQd~LN~~f~~w~ 176 (263)
T 3u2u_A 127 PG--------------------W---PDCFNSGVFVYQPSV----ETYNQLLHLASEQG---SFDGGDQGILNTFFSSWA 176 (263)
T ss_dssp TT--------------------S---TTSEEEEEEEECCCH----HHHHHHHHHHHHHC---CTTSSHHHHHHHHTTTTT
T ss_pred CC--------------------C---CccccCeEEEEcccH----HHHHHHHHHHHhcC---CCCcccHHHHHHHhcccc
Confidence 42 1 258999999999964 55666666665433 2455788999999988
Q ss_pred ---ceeecCCccccccC-CCCCCc--hhhcCCCeEEEccCCCCCcccC
Q 009572 465 ---LTEPLNPAWHVLGL-GYTNVD--PQLIEKGAVLHYNGNSKPWLKI 506 (532)
Q Consensus 465 ---~i~~L~~~WN~~~l-gy~~~~--~~~~~~~~IIHy~G~~KPW~~~ 506 (532)
.++.||..||++.. .|.... .+..++|+||||+|+.|||...
T Consensus 177 ~~~~~~~Lp~~yN~~~~~~y~~~~~~~~~~~~~~IIHf~g~~KPW~~~ 224 (263)
T 3u2u_A 177 TTDIRKHLPFIYNLSSISIYSYLPAFKVFGASAKVVHFLGRVKPWNYT 224 (263)
T ss_dssp TSCGGGBCCGGGSEEHHHHHSSHHHHHHHGGGCSEEECCSSSCGGGSE
T ss_pred ccCeeEeCCcccccccchhccccHHHHhhcCCeEEEEECCCCcCCCCC
Confidence 78999999999842 222111 1245789999999999999875
No 5
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=73.33 E-value=7 Score=28.85 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Q 009572 78 LTDQISLAKAFVVIAKESNNLQFAWELSAQIRNSQVLL 115 (532)
Q Consensus 78 ~~dq~~~a~~y~~~a~~~~~~~~~~~~~~~~~~~~~~~ 115 (532)
|+.|+++.+.|..-||..+.-.=+.-|..+++|+++-+
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~ 43 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEY 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999888888888888887543
No 6
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=68.23 E-value=9.9 Score=28.41 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=34.6
Q ss_pred HhhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhh
Q 009572 77 QLTDQISLAKAFVVIAKESNNLQFAWELSAQIRNSQVLLS 116 (532)
Q Consensus 77 ~~~dq~~~a~~y~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 116 (532)
=|..|+++.++|..-||..+...=+.=|..+++|+++-+-
T Consensus 6 PL~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~ 45 (51)
T 1yzm_A 6 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYD 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999998888888899988886543
No 7
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=64.93 E-value=11 Score=29.87 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=35.4
Q ss_pred HhhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhh
Q 009572 77 QLTDQISLAKAFVVIAKESNNLQFAWELSAQIRNSQVLLS 116 (532)
Q Consensus 77 ~~~dq~~~a~~y~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 116 (532)
=|.+|+++.++|..-||..+...=+.=|..+++|+++-+-
T Consensus 24 PL~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~ 63 (69)
T 1z0k_B 24 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYD 63 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999888889999999886543
No 8
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=63.04 E-value=15 Score=28.16 Aligned_cols=41 Identities=27% Similarity=0.287 Sum_probs=35.6
Q ss_pred HhhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhhh
Q 009572 77 QLTDQISLAKAFVVIAKESNNLQFAWELSAQIRNSQVLLSN 117 (532)
Q Consensus 77 ~~~dq~~~a~~y~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (532)
-|..|+++.++|.--||..+...=+.=|..+++|++.-+..
T Consensus 13 pL~EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei~~ 53 (59)
T 1z0j_B 13 LLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAK 53 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999998888899999998876543
No 9
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=37.70 E-value=1.8e+02 Score=29.48 Aligned_cols=41 Identities=24% Similarity=0.509 Sum_probs=31.2
Q ss_pred cchhhhhHHHhhhhhcC--CCCeEEEEecceeeccCchHHhcc
Q 009572 334 YLSMLNHLRFYIPEVFP--ALKKVVFLDDDVVVQKDLSALFSI 374 (532)
Q Consensus 334 ~lS~~ty~Rf~lPellP--~ldKVLYLD~DvIV~~DLseLw~i 374 (532)
|..++.+++--+-.+|. ..++||+||+|+++--|.-+.++.
T Consensus 80 y~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~ 122 (343)
T 1fo8_A 80 YYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQA 122 (343)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHH
T ss_pred chhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHH
Confidence 34455666667777777 589999999999999997765543
No 10
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=22.57 E-value=94 Score=23.56 Aligned_cols=40 Identities=13% Similarity=0.331 Sum_probs=33.3
Q ss_pred CCchhHHHHHHHHHHHHHHhhccccChHHHHHHHHHHHHhHHH
Q 009572 125 LTTRETETAIRDMALLLYQAQQFHYDSATMIMRLKAKIQGLEE 167 (532)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~ 167 (532)
++...+..+++++...|... ..|-+++-+.+...|...-|
T Consensus 5 lt~eq~~aILkaLdeaIe~G---PWe~SNFLRvIGKnL~eIRd 44 (57)
T 3fxd_A 5 LSDEQKETILKALNDAIEKG---PWDKSNFLRVIGKKLIAIRD 44 (57)
T ss_dssp CCHHHHHHHHHHHHHHHHHS---CTTSCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcC---CchHHHHHHHHHHhHHHHHH
Confidence 45778899999999999877 99999998888888776655
No 11
>2p6w_A VP54, putative glycosyltransferase (mannosyltransferase in glycosylating the PBCV-1 major...; HET: FLC; 1.60A {Paramecium bursaria chlorella virus 1} PDB: 2p72_A* 2p73_A*
Probab=21.50 E-value=2.2e+02 Score=26.97 Aligned_cols=18 Identities=39% Similarity=0.671 Sum_probs=16.7
Q ss_pred hcCCCCeEEEEecceeec
Q 009572 348 VFPALKKVVFLDDDVVVQ 365 (532)
Q Consensus 348 llP~ldKVLYLD~DvIV~ 365 (532)
-+|+.+-+-|||+|.+|.
T Consensus 69 khPeAEWfWWLDsDAlIM 86 (213)
T 2p6w_A 69 KFPSTEWFLWLDSDVYVN 86 (213)
T ss_dssp HCTTCSEEEEECTTEEEC
T ss_pred HCCCceEEEEecCCceee
Confidence 479999999999999998
No 12
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=20.98 E-value=2e+02 Score=24.53 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCCCchhHHHHHHHHHHHHHHhhcc--------------------ccChHHHHHHHHHHH
Q 009572 103 ELSAQIRNSQVLLSNAATRRTPLTTRETETAIRDMALLLYQAQQF--------------------HYDSATMIMRLKAKI 162 (532)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~kl~~~~ 162 (532)
+|.+++.++...+.......| +--.|++..+.++-.+.+. .-+-..+++|+.++|
T Consensus 22 ~L~~ei~eLk~~ve~lEkERD-----FYF~KLRdIEiLcQe~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~kIq~IL 96 (106)
T 4e61_A 22 SLNEEIEQYKGTVSTLEIERE-----FYFNKLRDIEILVHTTQDLINEGVYKFNDETITGHGNGNGGALLRFVKKVESIL 96 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTTCCC--------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhHHHHHHHHHHHH
Confidence 455555555444443333322 3456677777776665442 112346788999999
Q ss_pred HhHHH
Q 009572 163 QGLEE 167 (532)
Q Consensus 163 ~~~e~ 167 (532)
.+|||
T Consensus 97 YaTee 101 (106)
T 4e61_A 97 YATAE 101 (106)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 99997
Done!