BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009573
(532 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W84|A Chain A, Structure Of Pex14 In Compex With Pex5
pdb|2W85|A Chain A, Structure Of Pex14 In Compex With Pex19
Length = 70
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%)
Query: 54 REEQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAF 96
RE + AVKFL + +VR SP+ RR+FL+KKGLT EEID AF
Sbjct: 14 REPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDMAF 56
>pdb|3FF5|A Chain A, Crystal Structure Of The Conserved N-Terminal Domain Of
The Peroxisomal Matrix-Protein-Import Receptor, Pex14p
pdb|3FF5|B Chain B, Crystal Structure Of The Conserved N-Terminal Domain Of
The Peroxisomal Matrix-Protein-Import Receptor, Pex14p
Length = 54
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 34/49 (69%)
Query: 48 VNSEPMREEQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAF 96
+ S RE + AVKFL + +VR SP+ RR+FL+KKGLT EEID AF
Sbjct: 3 LGSPEFREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDLAF 51
>pdb|3A1F|A Chain A, The Crystal Structure Of Nadph Binding Domain Of
Gp91(Phox)
Length = 186
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 247 YFSELMNLLDVQLQEMKS---MSNSIRKLEGPSNNSGRTSLVNQEDHRDSVTGVKQPYAN 303
+F++L+ LL+ Q+QE + +S +I L G + V+ ++ +D +TG+KQ
Sbjct: 69 WFADLLQLLESQMQERNNAGFLSYNIY-LTGWDESQANHFAVHHDEEKDVITGLKQKTLY 127
Query: 304 GKADFD--MQSVRSSSP 318
G+ ++D +++ S P
Sbjct: 128 GRPNWDNEFKTIASQHP 144
>pdb|1E5N|A Chain A, E246c Mutant Of P Fluorescens Subsp. Cellulosa Xylanase A
In Complex With Xylopentaose
pdb|1E5N|B Chain B, E246c Mutant Of P Fluorescens Subsp. Cellulosa Xylanase A
In Complex With Xylopentaose
Length = 348
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 68 PKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVPDPPPSAQ 107
P RGS YR+S ++ E IDEAFRR P+A+
Sbjct: 137 PDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAE 176
>pdb|1CLX|A Chain A, Catalytic Core Of Xylanase A
pdb|1CLX|B Chain B, Catalytic Core Of Xylanase A
pdb|1CLX|C Chain C, Catalytic Core Of Xylanase A
pdb|1CLX|D Chain D, Catalytic Core Of Xylanase A
Length = 347
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 68 PKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVPDPPPSAQ 107
P RGS YR+S ++ E IDEAFRR P+A+
Sbjct: 136 PDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAE 175
>pdb|1W32|A Chain A, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
pdb|1W32|B Chain B, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
Length = 348
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 68 PKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVPDPPPSAQ 107
P RGS YR+S ++ E IDEAFRR P+A+
Sbjct: 137 PDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAE 176
>pdb|1W2V|A Chain A, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
pdb|1W2V|B Chain B, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
Length = 348
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 68 PKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVPDPPPSAQ 107
P RGS YR+S ++ E IDEAFRR P+A+
Sbjct: 137 PDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAE 176
>pdb|1XYS|A Chain A, Catalytic Core Of Xylanase A E246c Mutant
pdb|1XYS|B Chain B, Catalytic Core Of Xylanase A E246c Mutant
Length = 347
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 68 PKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVPDPPPSAQ 107
P RGS YR+S ++ E IDEAFRR P+A+
Sbjct: 136 PDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAE 175
>pdb|1W2P|A Chain A, The 3-Dimensional Structure Of A Xylanase (Xyn10a) From
Cellvibrio Japonicus
pdb|1W2P|B Chain B, The 3-Dimensional Structure Of A Xylanase (Xyn10a) From
Cellvibrio Japonicus
Length = 348
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 68 PKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVPDPPPSAQ 107
P RGS YR+S ++ E IDEAFRR P+A+
Sbjct: 137 PDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAE 176
>pdb|1W3H|A Chain A, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
pdb|1W3H|B Chain B, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
Length = 359
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 68 PKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVPDPPPSAQ 107
P RGS YR+S ++ E IDEAFRR P+A+
Sbjct: 148 PDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAE 187
>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed
With Nicotinamide Adenine Dinucleotide (Nad), And Zinc
pdb|1CDO|B Chain B, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed
With Nicotinamide Adenine Dinucleotide (Nad), And Zinc
Length = 374
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 280 GRTSLVNQEDHRDSVTGVKQPYANGKADFDMQSV 313
G T VN DH + ++ V NG DF ++ V
Sbjct: 237 GATDFVNPNDHSEPISQVLSKMTNGGVDFSLECV 270
>pdb|1G18|A Chain A, Reca-Adp-Alf4 Complex
pdb|1G19|A Chain A, Structure Of Reca Protein
pdb|1MO3|A Chain A, Reca-Adp Complex
pdb|1MO4|A Chain A, Reca-Atp-Gamma-S Complex
pdb|1MO5|A Chain A, Reca-Atp-Gamma-S-Mg Complex
pdb|1MO6|A Chain A, Reca-datp-mg Complex
Length = 350
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 257 VQLQEMKSMSNSIRKLEGPSNNSGRTSL-VNQ-EDHRDSVTGVKQPYANGKADFDMQSVR 314
V LQ + MS ++RK+ G NNSG T++ +NQ D + G + GKA SVR
Sbjct: 165 VGLQA-RLMSQALRKMTGALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVR 223
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.306 0.123 0.342
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,101,707
Number of Sequences: 62578
Number of extensions: 401237
Number of successful extensions: 1252
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1241
Number of HSP's gapped (non-prelim): 13
length of query: 532
length of database: 14,973,337
effective HSP length: 103
effective length of query: 429
effective length of database: 8,527,803
effective search space: 3658427487
effective search space used: 3658427487
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 54 (25.4 bits)