Query 009573
Match_columns 532
No_of_seqs 167 out of 254
Neff 3.4
Searched_HMMs 46136
Date Thu Mar 28 14:45:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009573.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009573hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2629 Peroxisomal membrane a 100.0 5.6E-42 1.2E-46 340.9 20.4 245 54-374 1-245 (300)
2 PF04695 Pex14_N: Peroxisomal 100.0 3.4E-33 7.4E-38 251.4 5.5 133 53-187 1-136 (136)
3 KOG2629 Peroxisomal membrane a 95.3 0.35 7.6E-06 50.4 13.3 158 153-320 81-247 (300)
4 PF07889 DUF1664: Protein of u 94.5 0.071 1.5E-06 49.2 5.3 116 158-277 5-120 (126)
5 PRK13454 F0F1 ATP synthase sub 93.1 0.85 1.8E-05 43.6 10.1 37 153-189 22-58 (181)
6 PRK06569 F0F1 ATP synthase sub 91.4 2.1 4.5E-05 41.0 10.3 15 175-189 23-37 (155)
7 PRK09174 F0F1 ATP synthase sub 90.9 2.3 4.9E-05 41.8 10.4 24 175-203 66-89 (204)
8 PRK13453 F0F1 ATP synthase sub 88.4 4.6 9.9E-05 38.2 10.1 31 155-189 15-45 (173)
9 PRK14471 F0F1 ATP synthase sub 87.0 6.4 0.00014 36.6 10.1 35 158-201 8-42 (164)
10 PF04799 Fzo_mitofusin: fzo-li 85.8 0.97 2.1E-05 44.0 4.1 99 166-279 49-163 (171)
11 PRK13460 F0F1 ATP synthase sub 85.8 7.6 0.00016 36.6 9.9 39 156-203 14-52 (173)
12 PRK13461 F0F1 ATP synthase sub 83.9 12 0.00026 34.6 10.2 30 156-189 3-32 (159)
13 PRK06975 bifunctional uroporph 83.0 53 0.0011 37.6 16.7 24 157-180 323-346 (656)
14 PRK10920 putative uroporphyrin 82.7 19 0.00041 39.1 12.5 27 154-180 33-59 (390)
15 PRK14472 F0F1 ATP synthase sub 82.4 13 0.00028 35.0 10.0 37 156-201 16-52 (175)
16 PF06103 DUF948: Bacterial pro 81.4 32 0.00069 29.1 12.2 60 214-273 29-88 (90)
17 PRK14473 F0F1 ATP synthase sub 79.9 19 0.00041 33.5 10.0 30 156-189 6-35 (164)
18 TIGR03321 alt_F1F0_F0_B altern 79.2 15 0.00033 36.5 9.8 30 156-189 3-32 (246)
19 PRK14474 F0F1 ATP synthase sub 79.0 16 0.00036 36.8 10.0 30 156-189 3-32 (250)
20 COG0711 AtpF F0F1-type ATP syn 79.0 17 0.00038 34.2 9.6 15 175-189 19-33 (161)
21 PRK07352 F0F1 ATP synthase sub 78.1 39 0.00084 31.9 11.6 28 156-183 17-44 (174)
22 CHL00118 atpG ATP synthase CF0 77.3 23 0.0005 32.9 9.8 33 160-201 24-56 (156)
23 PHA02681 ORF089 virion membran 77.0 4.9 0.00011 35.6 4.8 57 159-220 4-60 (92)
24 PRK08476 F0F1 ATP synthase sub 76.0 29 0.00062 32.0 9.9 22 175-201 20-41 (141)
25 PRK10476 multidrug resistance 74.9 16 0.00035 37.4 8.7 33 154-186 6-38 (346)
26 PRK07353 F0F1 ATP synthase sub 74.5 35 0.00076 30.6 9.9 36 156-201 4-39 (140)
27 PRK05759 F0F1 ATP synthase sub 72.8 36 0.00079 31.0 9.7 22 175-201 17-38 (156)
28 PRK13729 conjugal transfer pil 72.2 36 0.00079 38.0 11.1 55 212-273 62-117 (475)
29 PRK14475 F0F1 ATP synthase sub 71.8 33 0.00072 32.2 9.4 34 162-201 11-44 (167)
30 PF09527 ATPase_gene1: Putativ 70.5 5.1 0.00011 31.2 3.1 28 155-182 27-54 (55)
31 PRK06568 F0F1 ATP synthase sub 70.4 41 0.0009 32.2 9.7 36 160-203 5-40 (154)
32 PF07139 DUF1387: Protein of u 69.3 16 0.00035 38.6 7.3 78 206-283 170-259 (302)
33 PF00430 ATP-synt_B: ATP synth 68.6 47 0.001 29.0 9.1 23 176-203 13-35 (132)
34 PRK11637 AmiB activator; Provi 66.5 23 0.0005 37.8 8.0 24 248-271 112-135 (428)
35 KOG3300 NADH:ubiquinone oxidor 66.2 31 0.00068 33.0 7.8 28 153-180 28-55 (146)
36 PRK10600 nitrate/nitrite senso 65.8 46 0.001 36.1 10.2 28 213-240 177-204 (569)
37 PF04375 HemX: HemX; InterPro 65.7 89 0.0019 33.2 12.1 12 167-178 39-50 (372)
38 COG3883 Uncharacterized protei 64.4 32 0.0007 35.8 8.3 55 212-273 39-93 (265)
39 PRK06231 F0F1 ATP synthase sub 63.3 86 0.0019 30.9 10.7 12 176-187 62-73 (205)
40 PRK13428 F0F1 ATP synthase sub 63.0 47 0.001 36.2 9.7 25 162-189 4-28 (445)
41 TIGR01144 ATP_synt_b ATP synth 62.5 51 0.0011 29.9 8.4 22 175-201 8-29 (147)
42 PF10805 DUF2730: Protein of u 60.0 1.1E+02 0.0025 27.2 9.9 21 163-183 12-32 (106)
43 PF08181 DegQ: DegQ (SacQ) fam 59.0 11 0.00025 29.5 3.0 36 244-279 2-37 (46)
44 PF04156 IncA: IncA protein; 57.9 1.4E+02 0.003 28.1 10.8 60 172-233 54-114 (191)
45 PRK15048 methyl-accepting chem 56.9 1.3E+02 0.0029 32.7 11.8 11 176-186 210-220 (553)
46 PF06160 EzrA: Septation ring 56.6 32 0.0007 38.4 7.3 27 162-188 2-28 (560)
47 PF15654 Tox-WTIP: Toxin with 55.8 5.2 0.00011 32.6 0.8 33 156-190 10-42 (54)
48 PRK11107 hybrid sensory histid 55.4 1.1E+02 0.0024 34.6 11.2 15 172-186 192-206 (919)
49 PF02936 COX4: Cytochrome c ox 54.9 17 0.00037 34.2 4.1 34 154-187 70-103 (142)
50 PF06212 GRIM-19: GRIM-19 prot 53.0 26 0.00056 32.8 4.9 29 153-181 24-52 (130)
51 PF08700 Vps51: Vps51/Vps67; 52.5 66 0.0014 26.5 6.8 61 213-276 21-81 (87)
52 PF06120 Phage_HK97_TLTM: Tail 52.1 41 0.00088 35.6 6.7 36 228-270 70-105 (301)
53 PRK09173 F0F1 ATP synthase sub 52.1 1.9E+02 0.0041 26.8 10.4 7 195-201 30-36 (159)
54 PF07851 TMPIT: TMPIT-like pro 51.3 75 0.0016 34.1 8.5 49 227-275 13-61 (330)
55 PRK13455 F0F1 ATP synthase sub 50.5 1.7E+02 0.0038 27.8 10.2 10 154-163 23-32 (184)
56 PF12072 DUF3552: Domain of un 49.6 1.6E+02 0.0034 28.8 9.9 20 163-182 4-23 (201)
57 cd07321 Extradiol_Dioxygenase_ 48.5 12 0.00026 31.7 1.9 36 64-99 12-47 (77)
58 PRK09793 methyl-accepting prot 48.4 1.8E+02 0.0039 31.9 11.1 28 249-276 285-312 (533)
59 MTH00169 ATP8 ATP synthase F0 48.4 18 0.00038 30.4 2.8 43 156-198 4-48 (67)
60 TIGR00998 8a0101 efflux pump m 47.3 1.9E+02 0.0041 29.1 10.4 28 156-183 2-29 (334)
61 KOG0718 Molecular chaperone (D 47.2 31 0.00068 38.8 5.2 28 157-184 367-396 (546)
62 PF06120 Phage_HK97_TLTM: Tail 47.2 1.2E+02 0.0027 32.1 9.3 12 168-179 32-43 (301)
63 PF00015 MCPsignal: Methyl-acc 45.6 1.5E+02 0.0033 27.3 8.8 29 212-240 80-108 (213)
64 PRK08475 F0F1 ATP synthase sub 44.4 1.7E+02 0.0036 27.8 9.0 21 176-201 36-56 (167)
65 PF15005 IZUMO: Izumo sperm-eg 44.2 1.4E+02 0.003 29.0 8.5 99 171-269 13-113 (160)
66 PRK15136 multidrug efflux syst 43.7 1.6E+02 0.0034 31.4 9.6 24 154-177 19-42 (390)
67 PRK04778 septation ring format 43.3 99 0.0021 34.6 8.4 27 247-273 106-132 (569)
68 PRK14740 kdbF potassium-transp 43.0 37 0.0008 24.8 3.3 24 157-180 2-25 (29)
69 PRK15347 two component system 40.4 2.5E+02 0.0054 32.0 11.0 11 173-183 311-321 (921)
70 PRK15041 methyl-accepting chem 38.6 3.5E+02 0.0075 29.9 11.6 13 171-183 206-218 (554)
71 PF06936 Selenoprotein_S: Sele 37.3 43 0.00092 33.2 4.0 31 215-245 84-114 (190)
72 cd00922 Cyt_c_Oxidase_IV Cytoc 37.1 45 0.00097 31.2 3.9 29 157-185 73-101 (136)
73 PF06295 DUF1043: Protein of u 36.8 3E+02 0.0066 25.3 9.1 33 233-265 37-69 (128)
74 PRK06569 F0F1 ATP synthase sub 36.5 3.3E+02 0.0072 26.4 9.7 32 158-189 10-41 (155)
75 PF15061 DUF4538: Domain of un 36.5 31 0.00067 28.7 2.4 32 156-190 3-34 (58)
76 COG1566 EmrA Multidrug resista 36.1 2.3E+02 0.005 30.6 9.4 33 153-185 10-42 (352)
77 PF05791 Bacillus_HBL: Bacillu 35.1 4E+02 0.0087 25.7 10.1 30 249-278 152-181 (184)
78 COG3167 PilO Tfp pilus assembl 35.0 1.1E+02 0.0024 31.0 6.4 25 248-273 89-113 (211)
79 PF02465 FliD_N: Flagellar hoo 34.7 63 0.0014 27.6 4.2 23 251-273 34-56 (99)
80 KOG2391 Vacuolar sorting prote 34.6 6.6E+02 0.014 27.7 12.5 27 248-274 258-285 (365)
81 COG3850 NarQ Signal transducti 34.2 2.7E+02 0.0059 32.2 9.9 99 160-273 153-256 (574)
82 PF12072 DUF3552: Domain of un 33.7 3.7E+02 0.008 26.3 9.7 23 161-183 6-28 (201)
83 KOG4075 Cytochrome c oxidase, 33.6 37 0.0008 33.3 2.8 35 155-189 96-130 (167)
84 PRK06770 hypothetical protein; 33.5 2E+02 0.0042 28.8 7.7 19 225-243 67-85 (180)
85 PF11932 DUF3450: Protein of u 33.1 3E+02 0.0065 27.4 9.2 11 332-342 150-160 (251)
86 PLN03196 MOC1-like protein; Pr 32.7 51 0.0011 36.5 4.1 33 68-100 113-149 (487)
87 PRK10935 nitrate/nitrite senso 32.6 3.4E+02 0.0073 28.9 10.0 28 213-240 205-232 (565)
88 PRK10559 p-hydroxybenzoic acid 31.8 3.6E+02 0.0078 27.8 9.7 35 165-199 12-46 (310)
89 PRK12705 hypothetical protein; 31.3 3E+02 0.0064 31.2 9.6 11 176-186 23-33 (508)
90 PF11598 COMP: Cartilage oligo 31.1 44 0.00096 26.4 2.4 22 248-269 17-38 (45)
91 smart00803 TAF TATA box bindin 31.0 31 0.00067 28.4 1.6 28 56-97 38-65 (65)
92 PRK10361 DNA recombination pro 29.2 4.2E+02 0.0091 29.9 10.3 20 248-267 101-120 (475)
93 PF14241 DUF4341: Domain of un 29.1 52 0.0011 26.9 2.6 21 153-173 41-61 (62)
94 cd07922 CarBa CarBa is the A s 29.1 21 0.00045 31.0 0.3 31 68-98 17-47 (81)
95 PF12729 4HB_MCP_1: Four helix 28.3 3.9E+02 0.0084 23.0 10.4 49 214-262 75-125 (181)
96 PRK11677 hypothetical protein; 28.0 3E+02 0.0066 26.0 7.7 19 247-265 55-73 (134)
97 PRK13922 rod shape-determining 27.8 6.3E+02 0.014 25.3 11.0 25 166-193 17-41 (276)
98 PF11598 COMP: Cartilage oligo 27.4 2.6E+02 0.0056 22.2 6.0 30 247-276 9-38 (45)
99 PF05405 Mt_ATP-synt_B: Mitoch 27.4 1.4E+02 0.003 27.8 5.5 26 168-193 19-44 (163)
100 PF10241 KxDL: Uncharacterized 27.1 4.1E+02 0.009 23.0 9.0 52 219-270 16-67 (88)
101 PF02536 mTERF: mTERF; InterP 26.5 60 0.0013 32.8 3.1 27 74-100 242-268 (345)
102 PF10158 LOH1CR12: Tumour supp 26.0 5.6E+02 0.012 24.1 9.0 37 221-257 52-88 (131)
103 PF02536 mTERF: mTERF; InterP 25.9 60 0.0013 32.8 3.0 29 73-101 173-201 (345)
104 PF11887 DUF3407: Protein of u 25.7 1.1E+02 0.0024 31.2 4.8 65 216-284 54-118 (267)
105 smart00733 Mterf Mitochondrial 25.2 56 0.0012 20.8 1.8 23 66-88 6-31 (31)
106 PF09731 Mitofilin: Mitochondr 25.1 71 0.0015 35.3 3.6 23 156-178 2-24 (582)
107 PLN03196 MOC1-like protein; Pr 24.7 97 0.0021 34.3 4.5 29 73-101 338-366 (487)
108 PHA00426 type II holin 24.6 1.1E+02 0.0024 26.1 3.8 28 156-183 32-59 (67)
109 PF09945 DUF2177: Predicted me 24.4 1.1E+02 0.0023 28.8 4.1 32 153-184 68-99 (128)
110 cd07595 BAR_RhoGAP_Rich-like T 24.3 3.5E+02 0.0075 27.6 8.0 43 211-253 162-204 (244)
111 PF15079 DUF4546: Domain of un 24.0 3.1E+02 0.0067 27.6 7.2 50 210-261 50-100 (205)
112 smart00283 MA Methyl-accepting 23.8 5.9E+02 0.013 23.8 9.0 16 248-263 76-91 (262)
113 PF11932 DUF3450: Protein of u 23.6 2.9E+02 0.0063 27.6 7.2 40 234-273 58-97 (251)
114 PRK11466 hybrid sensory histid 23.5 9.7E+02 0.021 27.5 12.1 16 254-269 447-462 (914)
115 PRK15041 methyl-accepting chem 23.4 4.6E+02 0.0099 29.1 9.3 33 212-244 399-431 (554)
116 PRK13729 conjugal transfer pil 23.3 1.8E+02 0.0039 32.8 6.2 54 213-273 71-124 (475)
117 PF08405 Calici_PP_N: Viral po 23.3 6E+02 0.013 27.8 9.7 51 217-267 283-333 (358)
118 PF13801 Metal_resist: Heavy-m 23.0 3.3E+02 0.0072 22.5 6.5 34 232-265 73-106 (125)
119 cd00632 Prefoldin_beta Prefold 22.6 2.8E+02 0.006 24.2 6.1 25 249-273 80-104 (105)
120 PF07889 DUF1664: Protein of u 22.6 2.5E+02 0.0054 26.4 6.1 84 181-280 19-102 (126)
121 TIGR00778 ahpD_dom alkylhydrop 22.6 93 0.002 23.1 2.8 40 55-97 8-47 (50)
122 COG3883 Uncharacterized protei 22.5 3.9E+02 0.0085 28.1 8.1 22 248-269 181-202 (265)
123 COG5264 VTC1 Vacuolar transpor 22.4 1E+02 0.0022 29.2 3.4 28 154-181 31-58 (126)
124 PF10660 MitoNEET_N: Iron-cont 22.4 29 0.00063 29.2 0.0 24 153-176 31-54 (64)
125 KOG4580 Component of vacuolar 22.2 1.1E+02 0.0023 28.5 3.5 28 154-181 16-43 (112)
126 KOG3433 Protein involved in me 22.1 5.2E+02 0.011 26.3 8.5 44 230-273 100-143 (203)
127 PF07960 CBP4: CBP4; InterPro 22.0 5E+02 0.011 24.7 7.9 36 157-193 4-46 (128)
128 PRK15048 methyl-accepting chem 21.9 5.3E+02 0.011 28.2 9.3 28 212-239 397-424 (553)
129 PF10785 NADH-u_ox-rdase: NADH 21.8 1.1E+02 0.0023 26.7 3.3 27 154-180 18-44 (86)
130 PF15141 DUF4574: Domain of un 21.8 42 0.0009 29.7 0.8 15 166-180 14-28 (84)
131 PF14316 DUF4381: Domain of un 21.5 1.2E+02 0.0027 27.9 3.9 28 157-184 20-47 (146)
132 PF03672 UPF0154: Uncharacteri 21.5 1E+02 0.0023 26.0 3.1 25 162-187 2-26 (64)
133 smart00787 Spc7 Spc7 kinetocho 21.4 2.5E+02 0.0054 29.7 6.5 66 214-280 204-269 (312)
134 PF10498 IFT57: Intra-flagella 21.4 4.6E+02 0.0099 28.4 8.6 29 155-184 215-244 (359)
135 COG1344 FlgL Flagellin and rel 21.2 4.3E+02 0.0093 27.9 8.2 56 214-276 67-128 (360)
136 PF10112 Halogen_Hydrol: 5-bro 21.1 7.4E+02 0.016 23.8 9.8 12 163-174 34-45 (199)
137 PRK11637 AmiB activator; Provi 21.1 3.5E+02 0.0077 29.0 7.7 49 228-276 201-249 (428)
138 KOG2150 CCR4-NOT transcription 21.0 1.3E+02 0.0028 34.6 4.6 62 211-281 5-66 (575)
139 TIGR01386 cztS_silS_copS heavy 21.0 8.9E+02 0.019 24.6 11.2 18 254-271 279-296 (457)
140 PF01708 Gemini_mov: Geminivir 21.0 1.4E+02 0.0031 26.9 3.9 41 153-193 29-72 (91)
141 PF07412 Geminin: Geminin; In 20.8 4.7E+02 0.01 26.6 7.9 69 212-281 108-178 (200)
142 PF14880 COX14: Cytochrome oxi 20.6 1.5E+02 0.0032 24.0 3.7 7 155-161 6-12 (59)
143 PF11282 DUF3082: Protein of u 20.6 1.3E+02 0.0028 26.5 3.5 25 160-184 6-30 (82)
144 PF12821 DUF3815: Protein of u 20.5 1.3E+02 0.0028 27.2 3.7 25 161-185 23-47 (130)
145 PF10661 EssA: WXG100 protein 20.5 1.3E+02 0.0027 28.6 3.8 27 157-183 118-144 (145)
146 PF10168 Nup88: Nuclear pore c 20.3 3E+02 0.0065 32.4 7.4 17 80-96 402-418 (717)
147 PF09682 Holin_LLH: Phage holi 20.1 6.2E+02 0.013 22.5 8.3 32 157-189 3-34 (108)
148 PF08317 Spc7: Spc7 kinetochor 20.1 5E+02 0.011 27.1 8.4 9 153-161 134-142 (325)
No 1
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-42 Score=340.87 Aligned_cols=245 Identities=28% Similarity=0.393 Sum_probs=180.8
Q ss_pred hHHHHHHHHHhcCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHhhCCCCCCCCCCCcccccccccCCCCCcCCCCCCCCC
Q 009573 54 REEQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVPDPPPSAQATSANQVGQVKSSSSNIQSQAPTQAL 133 (532)
Q Consensus 54 Redlv~sAV~FL~dP~V~~sPl~kKi~FLesKGLT~eEI~~Al~ra~~~~ps~~~~sasq~G~~~~stsn~q~~a~~q~Y 133 (532)
||+||++||+||+||+|+++||.+||+||++||||++||++||+|.|...-. .+. +. +++.++ .+.++|
T Consensus 1 Redli~~AVkFL~~~kVr~aPli~kr~FLksKGLT~eEI~eAfk~~gi~~~d---~s~-~~----p~~~~~---~~~~p~ 69 (300)
T KOG2629|consen 1 REDLIENAVKFLQNPKVRDAPLIKKREFLKSKGLTEEEIQEAFKRDGIPAQD---VSK-QI----PTANQV---VSGGPP 69 (300)
T ss_pred CcHHHHHHHHHhcCcccccchHHHHHHHHHhcCCCHHHHHHHHHhcCCcccc---ccc-cC----CCcccc---cCCCch
Confidence 8999999999999999999999999999999999999999999996543210 000 00 000111 111111
Q ss_pred CCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccchhhhhhcCcCHH
Q 009573 134 QPQPAGAAPTAVSPVSTTMMSRFHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDDSENKSIAKPSLA 213 (532)
Q Consensus 134 qp~~~~Pap~g~~p~~~~~~prrDWRDyFIMAtv~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke~~~k~e~k~~i~ 213 (532)
.+- .+|.+ ...+||||||+||++++|+.||+|.|+|+||+|+|+++.+. ++|.||. .|+
T Consensus 70 ~~~--------~~P~~---~~~~rwrdy~vmAvi~aGi~y~~y~~~K~YV~P~~l~~~~~-k~e~~k~---------~Ld 128 (300)
T KOG2629|consen 70 LLI--------IQPQQ---NVLRRWRDYFVMAVILAGIAYAAYRFVKSYVLPRFLGESKD-KLEADKR---------QLD 128 (300)
T ss_pred hhh--------cCCCc---cchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCccch-hHHHHHH---------HHH
Confidence 111 11222 56799999999999999999999999999999999999988 8887764 356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccCCCccccccccccc
Q 009573 214 EEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSNNSGRTSLVNQEDHRDS 293 (532)
Q Consensus 214 eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~~~id~f~~~~~~~QEd~~~~ 293 (532)
++..++.|...+...+++++.++|..++.| +...|+.+ ..-+-.++..|++|+ ++
T Consensus 129 ~~~~~~~~~~~~l~~~va~v~q~~~~qq~E---ls~~L~~l----~~~~~~~s~~~~k~e------------------se 183 (300)
T KOG2629|consen 129 DQFDKAAKSLNALMDEVAQVSQLLATQQSE---LSRALASL----KNTLVQLSRNIEKLE------------------SE 183 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHhhhhHHHHH------------------HH
Confidence 666666788888888898988888877553 33333333 333336666666666 44
Q ss_pred ccccccccccCCCCccccCCCCCCCCCCCCCCCCCCCchHHHHHHHHhhCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q 009573 294 VTGVKQPYANGKADFDMQSVRSSSPPAPGEPSVAPHPKSYMEIMAMVQRGEKPPNIRDINDLPPNPNQQLPNPRLAPKAK 373 (532)
Q Consensus 294 ~~slKQl~~ng~~~~d~~s~r~s~~p~~~e~~~~~hp~sy~eim~m~qrg~~p~~i~di~d~ppnp~~~~~~~r~~~~~k 373 (532)
++.+|++..|++.--+ |...+ +.|+||..||.+|.| ++.+||++|+++++.+..+..|..+
T Consensus 184 i~~Ik~lvln~~~f~~---------p~~p~-~~p~ip~wqi~~~sp---------~~~~~~~~~~~ne~~s~~~~~p~ss 244 (300)
T KOG2629|consen 184 INTIKQLVLNMSNFAP---------PVAPS-SAPSIPSWQIQAESP---------HHSSNRMTSTDNEKASDFATPPNSS 244 (300)
T ss_pred HHHHHHHHhcccccCC---------CCCcc-cCCCCchhhhccccc---------hhhhccCCCCCCcccccCCCCCCCC
Confidence 5666777777644332 33322 889999999998654 7889999999999999999999999
Q ss_pred c
Q 009573 374 P 374 (532)
Q Consensus 374 p 374 (532)
|
T Consensus 245 p 245 (300)
T KOG2629|consen 245 P 245 (300)
T ss_pred C
Confidence 8
No 2
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=99.97 E-value=3.4e-33 Score=251.38 Aligned_cols=133 Identities=34% Similarity=0.509 Sum_probs=44.4
Q ss_pred chHHHHHHHHHhcCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHhhCCCCCCCCCCCcc--cccccccCCC-CCcCCCCC
Q 009573 53 MREEQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVPDPPPSAQATSA--NQVGQVKSSS-SNIQSQAP 129 (532)
Q Consensus 53 ~Redlv~sAV~FL~dP~V~~sPl~kKi~FLesKGLT~eEI~~Al~ra~~~~ps~~~~sa--sq~G~~~~st-sn~q~~a~ 129 (532)
+||+||++||+||+||+|+++|+++||+||++||||++||++||+|++......++... .+.+...... ....+..+
T Consensus 1 ~Re~li~~A~~FL~~p~V~~sp~~~k~~FL~sKGLt~~EI~~al~~a~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (136)
T PF04695_consen 1 MREDLIEQAVKFLQDPKVRNSPLEKKIAFLESKGLTEEEIDEALGRAGSPPATSSTPAASPASSSQPSSTPSSQPAPPPP 80 (136)
T ss_dssp -HHHHHHHHHHHHCTTTCCCS-HHHHHHHHHHCT--HHHHHHHHHHHT--S-----------------------------
T ss_pred CHHHHHHHHHHHhCCcccccCCHHHHHHHHHcCCCCHHHHHHHHHhcCCccccccccccccccCCCCCCCCCCCCCCCCC
Confidence 59999999999999999999999999999999999999999999999887631111110 0001000000 00000000
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccccchhHHHHHHHHHHHHHhHHHHHHHHHhhcccc
Q 009573 130 TQALQPQPAGAAPTAVSPVSTTMMSRFHWYHAVLAVGLLAASGAGTAVFFKKSLIPRL 187 (532)
Q Consensus 130 ~q~Yqp~~~~Pap~g~~p~~~~~~prrDWRDyFIMAtv~gGvgYGlY~L~KrYIlP~L 187 (532)
.....+.+ .+++.....++++ .++++|||||+|++++||++||+|.|+|+||+|+|
T Consensus 81 ~~~~~~~~-~~~~~~~~~~pp~-~p~~~wr~~~~~a~~~~Gl~~~~y~~~k~~v~P~l 136 (136)
T PF04695_consen 81 PPPSPPPP-QPPPPPYPRPPPL-PPQRTWRDVFITAYAFGGLGYGLYGLSKKYVEPML 136 (136)
T ss_dssp ----------------------------------------------------------
T ss_pred CCCCCCCC-CCCCccccchhhh-cccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCcC
Confidence 00000000 0000000111111 37889999999999999999999999999999987
No 3
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.29 E-value=0.35 Score=50.38 Aligned_cols=158 Identities=14% Similarity=0.160 Sum_probs=102.9
Q ss_pred cccchhHHH-HHHHHHHHHHhHHHH-HHHHHhhcccccc--cchhhccccccchhhhhhcCcCHHHHHHHHHHHHHHHHH
Q 009573 153 MSRFHWYHA-VLAVGLLAASGAGTA-VFFKKSLIPRLKS--WIRKVVLEEEDDSENKSIAKPSLAEEAAAAAKAAAAAAS 228 (532)
Q Consensus 153 ~prrDWRDy-FIMAtv~gGvgYGlY-~L~KrYIlP~Lkp--ptrs~~LE~Dke~~~k~e~k~~i~eE~aea~ka~aaa~s 228 (532)
..-|||... .|+||+.-|+ |-+| ..+-.||++-=++ .--+-.|+..-..+ .+-++. |.+|+++..+..+.+-+
T Consensus 81 ~rwrdy~vmAvi~aGi~y~~-y~~~K~YV~P~~l~~~~~k~e~~k~~Ld~~~~~~-~~~~~~-l~~~va~v~q~~~~qq~ 157 (300)
T KOG2629|consen 81 RRWRDYFVMAVILAGIAYAA-YRFVKSYVLPRFLGESKDKLEADKRQLDDQFDKA-AKSLNA-LMDEVAQVSQLLATQQS 157 (300)
T ss_pred hhHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHhhCccchhHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHH
Confidence 467999876 6677766665 5554 3445667766666 22221333211111 122333 89999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccCCCccccc--cccccccc---cccccccc
Q 009573 229 DVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSNNSGRTSLVNQ--EDHRDSVT---GVKQPYAN 303 (532)
Q Consensus 229 evakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~~~id~f~~~~~~~Q--Ed~~~~~~---slKQl~~n 303 (532)
|++.++-.|.+. |+.+.+.+++.+.||..++..+-++++.+.-+.-.+.-++ ..+..... +..-+=.+
T Consensus 158 Els~~L~~l~~~-------~~~~s~~~~k~esei~~Ik~lvln~~~f~~p~~p~~~p~ip~wqi~~~sp~~~~~~~~~~~ 230 (300)
T KOG2629|consen 158 ELSRALASLKNT-------LVQLSRNIEKLESEINTIKQLVLNMSNFAPPVAPSSAPSIPSWQIQAESPHHSSNRMTSTD 230 (300)
T ss_pred HHHHHHHHHHHH-------HHHhhhhHHHHHHHHHHHHHHHhcccccCCCCCcccCCCCchhhhccccchhhhccCCCCC
Confidence 999999888877 8899999999999999999999999977666655544444 22333222 22222234
Q ss_pred CCCCccccCCCCCCCCC
Q 009573 304 GKADFDMQSVRSSSPPA 320 (532)
Q Consensus 304 g~~~~d~~s~r~s~~p~ 320 (532)
...++||++.=.+||+.
T Consensus 231 ne~~s~~~~~p~sspe~ 247 (300)
T KOG2629|consen 231 NEKASDFATPPNSSPET 247 (300)
T ss_pred CcccccCCCCCCCCCcc
Confidence 46677777666666633
No 4
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=94.45 E-value=0.071 Score=49.24 Aligned_cols=116 Identities=15% Similarity=0.206 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccchhhhhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009573 158 WYHAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDDSENKSIAKPSLAEEAAAAAKAAAAAASDVAKASQEL 237 (532)
Q Consensus 158 WRDyFIMAtv~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke~~~k~e~k~~i~eE~aea~ka~aaa~sevakt~qeL 237 (532)
|.-+.+-|+++|++||| |.-+|=.=+|-|.==||+ -+..--..+ -++++. +.+.++.+++.....+..|+.-+.++
T Consensus 5 ~~~~i~paa~~gavGY~-Y~wwKGws~sD~M~vTrr-~m~~A~~~v-~kql~~-vs~~l~~tKkhLsqRId~vd~klDe~ 80 (126)
T PF07889_consen 5 WSSLIVPAAAIGAVGYG-YMWWKGWSFSDLMFVTRR-SMSDAVASV-SKQLEQ-VSESLSSTKKHLSQRIDRVDDKLDEQ 80 (126)
T ss_pred ccchhhHHHHHHHHHhe-eeeecCCchhHHHHHHHH-hHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33455558889999997 333554444444444555 333211111 234444 78888888899999999999888888
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 009573 238 LNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSN 277 (532)
Q Consensus 238 l~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~~~id 277 (532)
.+.....+..+.++-.-++.+..+++++...+..|++.|+
T Consensus 81 ~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 81 KEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877777777777777888888888888888888887663
No 5
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=93.08 E-value=0.85 Score=43.58 Aligned_cols=37 Identities=11% Similarity=0.168 Sum_probs=22.6
Q ss_pred cccchhHHHHHHHHHHHHHhHHHHHHHHHhhcccccc
Q 009573 153 MSRFHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKS 189 (532)
Q Consensus 153 ~prrDWRDyFIMAtv~gGvgYGlY~L~KrYIlP~Lkp 189 (532)
.|..||--|......+..++..+|+|++||++|-|..
T Consensus 22 mp~ld~~t~~~q~~~~lI~F~iL~~ll~k~l~~PI~~ 58 (181)
T PRK13454 22 MPQLDFSTFPNQIFWLLVTLVAIYFVLTRVALPRIGA 58 (181)
T ss_pred CCCCcHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567776432222223334556788999999986665
No 6
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=91.37 E-value=2.1 Score=40.99 Aligned_cols=15 Identities=20% Similarity=0.394 Sum_probs=13.4
Q ss_pred HHHHHHHhhcccccc
Q 009573 175 TAVFFKKSLIPRLKS 189 (532)
Q Consensus 175 lY~L~KrYIlP~Lkp 189 (532)
+|+|+++|++|.|..
T Consensus 23 Ly~ll~kf~~ppI~~ 37 (155)
T PRK06569 23 LYIFVYKFITPKAEE 37 (155)
T ss_pred HHHHHHHHhHHHHHH
Confidence 588999999998887
No 7
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=90.90 E-value=2.3 Score=41.80 Aligned_cols=24 Identities=21% Similarity=0.544 Sum_probs=16.5
Q ss_pred HHHHHHHhhcccccccchhhccccccchh
Q 009573 175 TAVFFKKSLIPRLKSWIRKVVLEEEDDSE 203 (532)
Q Consensus 175 lY~L~KrYIlP~Lkpptrs~~LE~Dke~~ 203 (532)
+|+|.+||++|.|.. +||+.++.|
T Consensus 66 L~~lL~k~~~~pI~~-----vLe~R~~~I 89 (204)
T PRK09174 66 FYLFMSRVILPRIGG-----IIETRRDRI 89 (204)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 478899999986655 666554433
No 8
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=88.39 E-value=4.6 Score=38.22 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=20.3
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHhhcccccc
Q 009573 155 RFHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKS 189 (532)
Q Consensus 155 rrDWRDyFIMAtv~gGvgYGlY~L~KrYIlP~Lkp 189 (532)
..||...|+.+..+.-+ |+|.++|++|-|..
T Consensus 15 ~~~~~t~~~~iInFliL----~~lL~~~l~~pi~~ 45 (173)
T PRK13453 15 GVEWGTVIVTVLTFIVL----LALLKKFAWGPLKD 45 (173)
T ss_pred CCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 46788887776655554 55677777765554
No 9
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=87.04 E-value=6.4 Score=36.56 Aligned_cols=35 Identities=11% Similarity=0.083 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccc
Q 009573 158 WYHAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDD 201 (532)
Q Consensus 158 WRDyFIMAtv~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke 201 (532)
|...|+.++.+.- +|+|.++|++|-|.. .+++.++
T Consensus 8 ~~~~~~~~i~Fli----l~~ll~~~l~~pi~~-----~l~~R~~ 42 (164)
T PRK14471 8 FGLFFWQTILFLI----LLLLLAKFAWKPILG-----AVKERED 42 (164)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHhHHHHHH-----HHHHHHH
Confidence 7555555444333 466788888776655 5554444
No 10
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=85.83 E-value=0.97 Score=43.96 Aligned_cols=99 Identities=14% Similarity=0.208 Sum_probs=21.8
Q ss_pred HHHHHHhHHHHHHHHHhhcccccccchhhccccccchhhhhhcCcCHHHHHHHHHHHHHHHH---------HHHHHHHHH
Q 009573 166 GLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDDSENKSIAKPSLAEEAAAAAKAAAAAA---------SDVAKASQE 236 (532)
Q Consensus 166 tv~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke~~~k~e~k~~i~eE~aea~ka~aaa~---------sevakt~qe 236 (532)
.+++|+.||+.++|-|. .|+.+. || ..||..+.+=+.+..+.+.+.. .||+.|-..
T Consensus 49 Ia~~~~~Yg~lYlYERL------tWT~~A-----KE----R~fK~Qfv~hAt~KLr~iv~~tsancs~QVqqeL~~tf~r 113 (171)
T PF04799_consen 49 IAVSGSLYGGLYLYERL------TWTNKA-----KE----RAFKRQFVDHATEKLRLIVSFTSANCSHQVQQELSSTFAR 113 (171)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred HHHHHHHHHHHHHHHHH------hcCchH-----HH----HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 34677889998888874 688871 22 4566555555555555444333 223222222
Q ss_pred HH-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 009573 237 LL-------NSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSNNS 279 (532)
Q Consensus 237 Ll-------~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~~~id~f 279 (532)
|- ..-++|-+.|.+-++.||+....+|.|++.-..|++.+++|
T Consensus 114 L~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F 163 (171)
T PF04799_consen 114 LCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERF 163 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22223333344445555555556666665555555444444
No 11
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=85.78 E-value=7.6 Score=36.62 Aligned_cols=39 Identities=13% Similarity=0.029 Sum_probs=20.9
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccchh
Q 009573 156 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDDSE 203 (532)
Q Consensus 156 rDWRDyFIMAtv~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke~~ 203 (532)
.+|...|+.+..+.-+ |++.++|++|-|.. .+++.++.+
T Consensus 14 ~~~~~~~~~~i~Flil----~~iL~~~~~kpi~~-----~l~~R~~~I 52 (173)
T PRK13460 14 VNPGLVVWTLVTFLVV----VLVLKKFAWDVILK-----ALDERASGV 52 (173)
T ss_pred CcHhHHHHHHHHHHHH----HHHHHHHhHHHHHH-----HHHHHHHHH
Confidence 4776666654444444 45566666654444 555554433
No 12
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=83.87 E-value=12 Score=34.59 Aligned_cols=30 Identities=7% Similarity=0.105 Sum_probs=17.1
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhcccccc
Q 009573 156 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKS 189 (532)
Q Consensus 156 rDWRDyFIMAtv~gGvgYGlY~L~KrYIlP~Lkp 189 (532)
.||...|+.+..++-+ ++|.++|+++-|..
T Consensus 3 ~~~~~~~~~~inF~il----~~iL~~f~~kpi~~ 32 (159)
T PRK13461 3 INIPTIIATIINFIIL----LLILKHFFFDKIKA 32 (159)
T ss_pred CcHHHHHHHHHHHHHH----HHHHHHHhHHHHHH
Confidence 5787666655544444 45566666654444
No 13
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=83.01 E-value=53 Score=37.59 Aligned_cols=24 Identities=17% Similarity=0.044 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHH
Q 009573 157 HWYHAVLAVGLLAASGAGTAVFFK 180 (532)
Q Consensus 157 DWRDyFIMAtv~gGvgYGlY~L~K 180 (532)
-+.=||++..+++|+|.|.|++-+
T Consensus 323 ~~~~~~~~l~~~~~~g~~~~~~~q 346 (656)
T PRK06975 323 SAALWFVVVVLACAAAVGGYALNR 346 (656)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455679999999999999996544
No 14
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=82.74 E-value=19 Score=39.07 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=22.3
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHHH
Q 009573 154 SRFHWYHAVLAVGLLAASGAGTAVFFK 180 (532)
Q Consensus 154 prrDWRDyFIMAtv~gGvgYGlY~L~K 180 (532)
.++-|.=++|+..++.|+|+|+|++.+
T Consensus 33 ~~~g~~l~~~aili~la~g~g~y~~~~ 59 (390)
T PRK10920 33 NRTGLVLSAVAIAIALAAGAGLYYHGK 59 (390)
T ss_pred CCccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 467788888888888999999998854
No 15
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=82.44 E-value=13 Score=35.04 Aligned_cols=37 Identities=16% Similarity=0.029 Sum_probs=20.7
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccc
Q 009573 156 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDD 201 (532)
Q Consensus 156 rDWRDyFIMAtv~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke 201 (532)
.+|...|+.+..++- +|+|.++|++|-|.. .+++.++
T Consensus 16 ~~~~~~~~~~i~Fli----l~~lL~~~l~kpi~~-----~l~~R~~ 52 (175)
T PRK14472 16 PNPGLIFWTAVTFVI----VLLILKKIAWGPILS-----ALEEREK 52 (175)
T ss_pred CCHHHHHHHHHHHHH----HHHHHHHHhHHHHHH-----HHHHHHH
Confidence 466666665554443 355677777665544 5554444
No 16
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=81.38 E-value=32 Score=29.06 Aligned_cols=60 Identities=17% Similarity=0.288 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009573 214 EEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLE 273 (532)
Q Consensus 214 eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~ 273 (532)
+|..+..+.....+..+.+-+.++++.-++-..-....++.++...+.++.+..++++|.
T Consensus 29 ~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~ 88 (90)
T PF06103_consen 29 DEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELN 88 (90)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444334444433222222233444555555666666666666554
No 17
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=79.87 E-value=19 Score=33.48 Aligned_cols=30 Identities=3% Similarity=-0.072 Sum_probs=16.8
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhcccccc
Q 009573 156 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKS 189 (532)
Q Consensus 156 rDWRDyFIMAtv~gGvgYGlY~L~KrYIlP~Lkp 189 (532)
.+|...|+....+.-+ ++|.++|+++-|..
T Consensus 6 ~~~~~~~~~~inflil----~~lL~~fl~kpi~~ 35 (164)
T PRK14473 6 INLGLLIAQLINFLLL----IFLLRTFLYRPVLN 35 (164)
T ss_pred CcHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 5676555554444444 55666666655544
No 18
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=79.20 E-value=15 Score=36.51 Aligned_cols=30 Identities=10% Similarity=0.243 Sum_probs=18.2
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhcccccc
Q 009573 156 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKS 189 (532)
Q Consensus 156 rDWRDyFIMAtv~gGvgYGlY~L~KrYIlP~Lkp 189 (532)
.||.+.|+.+..+.-+ ++|.++|+++-|..
T Consensus 3 id~~t~~~qiInFlil----~~lL~kfl~kPi~~ 32 (246)
T TIGR03321 3 IDWFTVIAQLINFLIL----VWLLKRFLYRPILD 32 (246)
T ss_pred CcHHHHHHHHHHHHHH----HHHHHHHhHHHHHH
Confidence 5787777665544444 55666666654444
No 19
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=79.03 E-value=16 Score=36.82 Aligned_cols=30 Identities=10% Similarity=0.271 Sum_probs=18.0
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhcccccc
Q 009573 156 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKS 189 (532)
Q Consensus 156 rDWRDyFIMAtv~gGvgYGlY~L~KrYIlP~Lkp 189 (532)
.||..+|+.+..+.-+ ++|.++|+++-|..
T Consensus 3 id~~t~~~qiInFlIL----v~lL~~fl~kPi~~ 32 (250)
T PRK14474 3 IDWFTVVAQIINFLIL----VYLLRRFLYKPIIQ 32 (250)
T ss_pred CcHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 4787777766655555 45666666554443
No 20
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=78.99 E-value=17 Score=34.22 Aligned_cols=15 Identities=13% Similarity=0.042 Sum_probs=11.0
Q ss_pred HHHHHHHhhcccccc
Q 009573 175 TAVFFKKSLIPRLKS 189 (532)
Q Consensus 175 lY~L~KrYIlP~Lkp 189 (532)
+|+|+++|++|-|..
T Consensus 19 ll~ll~~~~~~pi~~ 33 (161)
T COG0711 19 LLWLLKKFVWKPILK 33 (161)
T ss_pred HHHHHHHHhHHHHHH
Confidence 467788888876655
No 21
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=78.09 E-value=39 Score=31.89 Aligned_cols=28 Identities=14% Similarity=-0.175 Sum_probs=15.4
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhh
Q 009573 156 FHWYHAVLAVGLLAASGAGTAVFFKKSL 183 (532)
Q Consensus 156 rDWRDyFIMAtv~gGvgYGlY~L~KrYI 183 (532)
.+|..++..+.-+.-+.+.+|+|+.++|
T Consensus 17 ~~~~~~~~~iinflIl~~lL~~fl~kpI 44 (174)
T PRK07352 17 LNLNLLETNLINLAIVIGLLYYFGRGFL 44 (174)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4665554445555555555566666554
No 22
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=77.35 E-value=23 Score=32.93 Aligned_cols=33 Identities=21% Similarity=0.142 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccc
Q 009573 160 HAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDD 201 (532)
Q Consensus 160 DyFIMAtv~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke 201 (532)
++|++.+.+. -+++|.++|+++-|.. .+++.++
T Consensus 24 t~~~~~inFl----iL~~lL~k~l~~Pi~~-----~l~~R~~ 56 (156)
T CHL00118 24 TLPLMALQFL----LLMVLLNIILYKPLLK-----VLDERKE 56 (156)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHH-----HHHHHHH
Confidence 4455444333 3577888998877655 4554444
No 23
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=76.98 E-value=4.9 Score=35.59 Aligned_cols=57 Identities=14% Similarity=0.118 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccchhhhhhcCcCHHHHHHHHH
Q 009573 159 YHAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDDSENKSIAKPSLAEEAAAAA 220 (532)
Q Consensus 159 RDyFIMAtv~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke~~~k~e~k~~i~eE~aea~ 220 (532)
-|.|+.++++.=|+|-+|.++|||-+|-=.++-.+-.|+.+ ..-|+.++-..|..+.
T Consensus 4 ~Da~~~~V~V~IVclliya~YRR~~i~~p~~~r~~D~L~~~-----ds~F~D~lTpDQVrAl 60 (92)
T PHA02681 4 LDALLTVIVISIVCYIVIMMYRRSCVSAPAVPRNKDLLPPG-----ASSFEDKMTDDQVRAF 60 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccCCCC-----CchhhccCCHHHHHHH
Confidence 48899999999999999999999966644433222123322 2456666555555544
No 24
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=75.98 E-value=29 Score=32.04 Aligned_cols=22 Identities=14% Similarity=0.221 Sum_probs=14.8
Q ss_pred HHHHHHHhhcccccccchhhccccccc
Q 009573 175 TAVFFKKSLIPRLKSWIRKVVLEEEDD 201 (532)
Q Consensus 175 lY~L~KrYIlP~Lkpptrs~~LE~Dke 201 (532)
+|+|.++|++|-|.. .+|+.++
T Consensus 20 l~~~l~kfl~kPi~~-----~l~~R~~ 41 (141)
T PRK08476 20 LIVILNSWLYKPLLK-----FMDNRNA 41 (141)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHH
Confidence 577889988876655 5554444
No 25
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=74.90 E-value=16 Score=37.43 Aligned_cols=33 Identities=12% Similarity=-0.056 Sum_probs=29.0
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHHHHhhccc
Q 009573 154 SRFHWYHAVLAVGLLAASGAGTAVFFKKSLIPR 186 (532)
Q Consensus 154 prrDWRDyFIMAtv~gGvgYGlY~L~KrYIlP~ 186 (532)
.+-+|+.+++.+.++.-+.+++|++++.|..|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (346)
T PRK10476 6 KKSPRKKLPALAIVALAIVALVFVIWRTDSAPS 38 (346)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHheccCceEe
Confidence 456899999999999999999999999888875
No 26
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=74.52 E-value=35 Score=30.64 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=20.5
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccc
Q 009573 156 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDD 201 (532)
Q Consensus 156 rDWRDyFIMAtv~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke 201 (532)
+|| .+|++++.+. -+++|.++++++-|.. .+++.++
T Consensus 4 ~~~-t~~~~~i~fl----il~~ll~~~l~~pi~~-----~l~~R~~ 39 (140)
T PRK07353 4 FDA-TLPLMAVQFV----LLTFILNALFYKPVGK-----VVEERED 39 (140)
T ss_pred cch-hHHHHHHHHH----HHHHHHHHHHHHHHHH-----HHHHHHH
Confidence 454 3566654333 3566778887766554 5555544
No 27
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=72.79 E-value=36 Score=31.02 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=13.5
Q ss_pred HHHHHHHhhcccccccchhhccccccc
Q 009573 175 TAVFFKKSLIPRLKSWIRKVVLEEEDD 201 (532)
Q Consensus 175 lY~L~KrYIlP~Lkpptrs~~LE~Dke 201 (532)
+|+|.+++++|-|.. .+++.++
T Consensus 17 l~~il~~~~~~pi~~-----~l~~R~~ 38 (156)
T PRK05759 17 LVWFIMKFVWPPIMK-----ALEERQK 38 (156)
T ss_pred HHHHHHHHhHHHHHH-----HHHHHHH
Confidence 466777777766555 4554444
No 28
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=72.24 E-value=36 Score=38.05 Aligned_cols=55 Identities=11% Similarity=0.159 Sum_probs=28.6
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009573 212 LAEEAAAAA-KAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLE 273 (532)
Q Consensus 212 i~eE~aea~-ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~ 273 (532)
|.+-....+ .+.+.+++++.+.+.+|... +..+.+.++..+..|+.|..++..|+
T Consensus 62 FddkVnqSALteqQ~kasELEKqLaaLrqE-------lq~~saq~~dle~KIkeLEaE~~~Lk 117 (475)
T PRK13729 62 FDDKVRQHATTEMQVTAAQMQKQYEEIRRE-------LDVLNKQRGDDQRRIEKLGQDNAALA 117 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 444444433 45555677777777777433 33344444444555555555555554
No 29
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=71.80 E-value=33 Score=32.23 Aligned_cols=34 Identities=21% Similarity=0.028 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccc
Q 009573 162 VLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDD 201 (532)
Q Consensus 162 FIMAtv~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke 201 (532)
|+..+|...+.+++.+ +++|+++-|.. .||+.++
T Consensus 11 ~~w~~i~f~il~~iL~-~~k~l~~pi~~-----~le~R~~ 44 (167)
T PRK14475 11 EFWVGAGLLIFFGILI-ALKVLPKALAG-----ALDAYAA 44 (167)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhHHHHHH-----HHHHHHH
Confidence 3333344444444322 23555444333 5555544
No 30
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=70.52 E-value=5.1 Score=31.22 Aligned_cols=28 Identities=21% Similarity=0.173 Sum_probs=24.6
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHh
Q 009573 155 RFHWYHAVLAVGLLAASGAGTAVFFKKS 182 (532)
Q Consensus 155 rrDWRDyFIMAtv~gGvgYGlY~L~KrY 182 (532)
++++..||+.+.++.|++.|+|.++|.+
T Consensus 27 ~~~t~p~~~~~g~llG~~~g~~~~~~~~ 54 (55)
T PF09527_consen 27 WFGTSPWFTLIGLLLGIAAGFYNVYRLV 54 (55)
T ss_pred HcCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567789999999999999999999864
No 31
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=70.42 E-value=41 Score=32.15 Aligned_cols=36 Identities=3% Similarity=-0.081 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccchh
Q 009573 160 HAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDDSE 203 (532)
Q Consensus 160 DyFIMAtv~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke~~ 203 (532)
|.|+...|...+ +++|+++|.+.-|. + .||+..+.|
T Consensus 5 ~~~fwq~I~FlI---ll~ll~kfawkPI~----~-~LeeR~~~I 40 (154)
T PRK06568 5 DESFWLAVSFVI---FVYLIYRPAKKAIL----N-SLDAKILEV 40 (154)
T ss_pred HhHHHHHHHHHH---HHHHHHHHhHHHHH----H-HHHHHHHHH
Confidence 445554444444 34457777754444 3 566554433
No 32
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=69.31 E-value=16 Score=38.59 Aligned_cols=78 Identities=13% Similarity=0.176 Sum_probs=49.7
Q ss_pred hhcCcCHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhhc
Q 009573 206 SIAKPSLAEEAAAAAKAAAAAASDVAKASQ----ELLNSKNEERRYFSELMNLLDVQLQEMKSMSN--------SIRKLE 273 (532)
Q Consensus 206 ~e~k~~i~eE~aea~ka~aaa~sevakt~q----eLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~--------si~~L~ 273 (532)
+..+.-|.+|+...+|.+-.+|.+|..-+. .||+.-++.|.--..+..++.+...|||-|+. .|..|+
T Consensus 170 ~RYr~~lkee~d~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAeeLkrltd~A~~MsE~Ql~ELR 249 (302)
T PF07139_consen 170 TRYRVVLKEEMDSSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDARQKKAEELKRLTDRASQMSEEQLAELR 249 (302)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 334455677777777888888877764432 24444444444456666777777888887765 566677
Q ss_pred CCCCccCCCc
Q 009573 274 GPSNNSGRTS 283 (532)
Q Consensus 274 ~~id~f~~~~ 283 (532)
.-|..|+.+.
T Consensus 250 adIK~fvs~r 259 (302)
T PF07139_consen 250 ADIKHFVSER 259 (302)
T ss_pred HHHHHHhhhh
Confidence 7777776654
No 33
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=68.57 E-value=47 Score=29.03 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=10.8
Q ss_pred HHHHHHhhcccccccchhhccccccchh
Q 009573 176 AVFFKKSLIPRLKSWIRKVVLEEEDDSE 203 (532)
Q Consensus 176 Y~L~KrYIlP~Lkpptrs~~LE~Dke~~ 203 (532)
|+|.++|++|-|.. .+++.++.+
T Consensus 13 ~~~l~~~~~~pi~~-----~l~~R~~~I 35 (132)
T PF00430_consen 13 FFLLNKFLYKPIKK-----FLDERKAKI 35 (132)
T ss_dssp HHHHHHHTHHHHHH-----HCS--S-HH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 45566666654444 555554434
No 34
>PRK11637 AmiB activator; Provisional
Probab=66.50 E-value=23 Score=37.76 Aligned_cols=24 Identities=8% Similarity=0.052 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 009573 248 FSELMNLLDVQLQEMKSMSNSIRK 271 (532)
Q Consensus 248 L~~lt~~ld~q~~ElKSl~~si~~ 271 (532)
+.++-..|+.+.+.|+.+..++-.
T Consensus 112 I~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 112 IAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555556655555544
No 35
>KOG3300 consensus NADH:ubiquinone oxidoreductase, B16.6 subunit/cell death-regulatory protein [Energy production and conversion; Cell cycle control, cell division, chromosome partitioning]
Probab=66.25 E-value=31 Score=32.97 Aligned_cols=28 Identities=7% Similarity=-0.055 Sum_probs=25.0
Q ss_pred cccchhHHHHHHHHHHHHHhHHHHHHHH
Q 009573 153 MSRFHWYHAVLAVGLLAASGAGTAVFFK 180 (532)
Q Consensus 153 ~prrDWRDyFIMAtv~gGvgYGlY~L~K 180 (532)
.|++-|..+-..|+++|..+||+|.+.+
T Consensus 28 ~pk~~~Sg~t~~aa~~gatayG~~~~~~ 55 (146)
T KOG3300|consen 28 IPKTGPSGMTMFAAVSGATAYGMYQVGQ 55 (146)
T ss_pred CCccCCCcchhhhHHHHHHHHHHHHHHh
Confidence 6788999999999999999999998764
No 36
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=65.80 E-value=46 Score=36.09 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009573 213 AEEAAAAAKAAAAAASDVAKASQELLNS 240 (532)
Q Consensus 213 ~eE~aea~ka~aaa~sevakt~qeLl~s 240 (532)
.+|...+..+...+..+|...+.+|-..
T Consensus 177 ~dE~g~L~~~~n~M~~~L~~~~~~l~~~ 204 (569)
T PRK10600 177 RDEMAMLGTALNNMSAELAESYAVLEQR 204 (569)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777776533
No 37
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=65.66 E-value=89 Score=33.24 Aligned_cols=12 Identities=42% Similarity=0.426 Sum_probs=8.5
Q ss_pred HHHHHhHHHHHH
Q 009573 167 LLAASGAGTAVF 178 (532)
Q Consensus 167 v~gGvgYGlY~L 178 (532)
+++|+|+|+|++
T Consensus 39 l~~alg~~~~~~ 50 (372)
T PF04375_consen 39 LALALGAGGWYW 50 (372)
T ss_pred HHHHHHHHHHHH
Confidence 337778887776
No 38
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.42 E-value=32 Score=35.78 Aligned_cols=55 Identities=16% Similarity=0.226 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009573 212 LAEEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLE 273 (532)
Q Consensus 212 i~eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~ 273 (532)
.+.+..+.++.++..+.+|+.-+.+++...++.++ -.+....|||.+...|..|+
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~-------~i~~~~~eik~l~~eI~~~~ 93 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQK-------EIDQSKAEIKKLQKEIAELK 93 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 46777777888888888888888888876444443 34444555555555555555
No 39
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=63.32 E-value=86 Score=30.85 Aligned_cols=12 Identities=0% Similarity=-0.349 Sum_probs=5.3
Q ss_pred HHHHHHhhcccc
Q 009573 176 AVFFKKSLIPRL 187 (532)
Q Consensus 176 Y~L~KrYIlP~L 187 (532)
++|.++|+++-|
T Consensus 62 v~lL~k~l~kPi 73 (205)
T PRK06231 62 LLLGIFLFWKPT 73 (205)
T ss_pred HHHHHHHHHHHH
Confidence 334445544433
No 40
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=63.01 E-value=47 Score=36.24 Aligned_cols=25 Identities=8% Similarity=0.122 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhcccccc
Q 009573 162 VLAVGLLAASGAGTAVFFKKSLIPRLKS 189 (532)
Q Consensus 162 FIMAtv~gGvgYGlY~L~KrYIlP~Lkp 189 (532)
||+-.+...+ +++|.++|++|-|..
T Consensus 4 ~i~qlInFlI---l~~lL~kfl~~Pi~~ 28 (445)
T PRK13428 4 FIGQLIGFAV---IVFLVWRFVVPPVRR 28 (445)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4444444444 466788888877665
No 41
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=62.50 E-value=51 Score=29.86 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=12.9
Q ss_pred HHHHHHHhhcccccccchhhccccccc
Q 009573 175 TAVFFKKSLIPRLKSWIRKVVLEEEDD 201 (532)
Q Consensus 175 lY~L~KrYIlP~Lkpptrs~~LE~Dke 201 (532)
+|+|.++|++|-|.. .+++.++
T Consensus 8 l~~il~~~~~~pi~~-----~l~~R~~ 29 (147)
T TIGR01144 8 LVWFCMKYVWPPLAK-----AIETRQK 29 (147)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHH
Confidence 455667777665554 5555544
No 42
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=60.04 E-value=1.1e+02 Score=27.19 Aligned_cols=21 Identities=10% Similarity=-0.197 Sum_probs=13.5
Q ss_pred HHHHHHHHHhHHHHHHHHHhh
Q 009573 163 LAVGLLAASGAGTAVFFKKSL 183 (532)
Q Consensus 163 IMAtv~gGvgYGlY~L~KrYI 183 (532)
|++++++++++..+.|.|+|+
T Consensus 12 i~a~~~~~~~~~~~~l~~~~a 32 (106)
T PF10805_consen 12 IWAVFGIAGGIFWLWLRRTYA 32 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 555555566666667777774
No 43
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=59.04 E-value=11 Score=29.49 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 009573 244 ERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSNNS 279 (532)
Q Consensus 244 ekk~L~~lt~~ld~q~~ElKSl~~si~~L~~~id~f 279 (532)
||+.++++-++|=..+.|+|.-+.+|+++..+||.+
T Consensus 2 ek~~ieelkqll~rle~eirett~sl~ninksidq~ 37 (46)
T PF08181_consen 2 EKKKIEELKQLLWRLENEIRETTDSLRNINKSIDQY 37 (46)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 456688889999999999999999999999888654
No 44
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=57.90 E-value=1.4e+02 Score=28.08 Aligned_cols=60 Identities=17% Similarity=0.142 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhhcccccccchhh-ccccccchhhhhhcCcCHHHHHHHHHHHHHHHHHHHHHH
Q 009573 172 GAGTAVFFKKSLIPRLKSWIRKV-VLEEEDDSENKSIAKPSLAEEAAAAAKAAAAAASDVAKA 233 (532)
Q Consensus 172 gYGlY~L~KrYIlP~Lkpptrs~-~LE~Dke~~~k~e~k~~i~eE~aea~ka~aaa~sevakt 233 (532)
+.|+|.+.++--.+...+..... .++.+.. ..+..+ ..+.+|..++.+...+..+++.+.
T Consensus 54 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~~~l-~~l~~el~~l~~~~~~~~~~l~~~ 114 (191)
T PF04156_consen 54 SLGLLCLLSKRPVQSVRPQQIEEPRLQGELS-ELQQQL-QQLQEELDQLQERIQELESELEKL 114 (191)
T ss_pred HHHHHHHHHccccccchHHHHHhhhhhhhHH-hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777766666632221 1111111 111122 224555555555555555555433
No 45
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=56.90 E-value=1.3e+02 Score=32.66 Aligned_cols=11 Identities=18% Similarity=0.011 Sum_probs=4.8
Q ss_pred HHHHHHhhccc
Q 009573 176 AVFFKKSLIPR 186 (532)
Q Consensus 176 Y~L~KrYIlP~ 186 (532)
|.+.|+.+-|+
T Consensus 210 ~~i~~~i~~pl 220 (553)
T PRK15048 210 YGIRRMLLTPL 220 (553)
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 46
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=56.56 E-value=32 Score=38.41 Aligned_cols=27 Identities=4% Similarity=0.107 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhccccc
Q 009573 162 VLAVGLLAASGAGTAVFFKKSLIPRLK 188 (532)
Q Consensus 162 FIMAtv~gGvgYGlY~L~KrYIlP~Lk 188 (532)
+|+..|+.-++|++.+++||..+=.|-
T Consensus 2 iI~iivi~l~~~~~~~~~rk~~~k~i~ 28 (560)
T PF06160_consen 2 IIGIIVIVLIIYIIGYIYRKRYYKEID 28 (560)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777777788888765543
No 47
>PF15654 Tox-WTIP: Toxin with a conserved tryptophan and TIP tripeptide motif
Probab=55.81 E-value=5.2 Score=32.62 Aligned_cols=33 Identities=9% Similarity=-0.083 Sum_probs=25.1
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhccccccc
Q 009573 156 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKSW 190 (532)
Q Consensus 156 rDWRDyFIMAtv~gGvgYGlY~L~KrYIlP~Lkpp 190 (532)
++=-++-...++.+|+||-+|..+| ++|.|+|+
T Consensus 10 ~~t~e~~~~~va~~G~gY~iYR~vR--mlPSL~PP 42 (54)
T PF15654_consen 10 VSTAETAAKIVAGVGAGYLIYRGVR--MLPSLFPP 42 (54)
T ss_pred chHHHHhhhheeecchhhhhhhHHh--hcccccCc
Confidence 3344566667778899999999987 68888884
No 48
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=55.36 E-value=1.1e+02 Score=34.55 Aligned_cols=15 Identities=7% Similarity=-0.204 Sum_probs=9.6
Q ss_pred hHHHHHHHHHhhccc
Q 009573 172 GAGTAVFFKKSLIPR 186 (532)
Q Consensus 172 gYGlY~L~KrYIlP~ 186 (532)
++.+|.++|+..-|+
T Consensus 192 ~~~~~~~~r~i~~pl 206 (919)
T PRK11107 192 LLFAFRLMRDVTGPI 206 (919)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455667777766665
No 49
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=54.87 E-value=17 Score=34.23 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=26.3
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHHHHhhcccc
Q 009573 154 SRFHWYHAVLAVGLLAASGAGTAVFFKKSLIPRL 187 (532)
Q Consensus 154 prrDWRDyFIMAtv~gGvgYGlY~L~KrYIlP~L 187 (532)
+.-+|+-+|-.+.++.|++.+++.+.|.|+.|-+
T Consensus 70 ~~gewk~v~~~~~~~i~~s~~l~~~~r~~~~~~~ 103 (142)
T PF02936_consen 70 PTGEWKKVFGGVFIFIGFSVLLFIWQRSYVYPPL 103 (142)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3468999999999999999999999999998763
No 50
>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].
Probab=53.04 E-value=26 Score=32.80 Aligned_cols=29 Identities=7% Similarity=-0.188 Sum_probs=25.5
Q ss_pred cccchhHHHHHHHHHHHHHhHHHHHHHHH
Q 009573 153 MSRFHWYHAVLAVGLLAASGAGTAVFFKK 181 (532)
Q Consensus 153 ~prrDWRDyFIMAtv~gGvgYGlY~L~Kr 181 (532)
.|++-|+-+.+++++++-.+||+|.+.+.
T Consensus 24 ~p~rg~sg~~~~~~~~~~~~~G~y~~~~~ 52 (130)
T PF06212_consen 24 LPKRGPSGWTMFAGGAGIMAYGFYKVGQG 52 (130)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999998873
No 51
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=52.48 E-value=66 Score=26.48 Aligned_cols=61 Identities=10% Similarity=0.139 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 009573 213 AEEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPS 276 (532)
Q Consensus 213 ~eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~~~i 276 (532)
..++....+..........+.++.+...+=. .|...+..+..++.+|..|...|..|...+
T Consensus 21 ~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~---~fI~as~~I~~m~~~~~~l~~~l~~l~~~~ 81 (87)
T PF08700_consen 21 IKEIRQLENKLRQEIEEKDEELRKLVYENYR---DFIEASDEISSMENDLSELRNLLSELQQSI 81 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555555555544322 277788888888888888877777776544
No 52
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=52.14 E-value=41 Score=35.56 Aligned_cols=36 Identities=8% Similarity=0.175 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009573 228 SDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIR 270 (532)
Q Consensus 228 sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~ 270 (532)
.++..++.++-.+ |....+.++.+.+++++|+.+|.
T Consensus 70 ~ql~~~~~k~~~s-------i~~q~~~i~~l~~~i~~l~~~i~ 105 (301)
T PF06120_consen 70 TQLRANIAKAEES-------IAAQKRAIEDLQKKIDSLKDQIK 105 (301)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666 34444444455555555555443
No 53
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=52.09 E-value=1.9e+02 Score=26.83 Aligned_cols=7 Identities=29% Similarity=0.501 Sum_probs=3.1
Q ss_pred ccccccc
Q 009573 195 VLEEEDD 201 (532)
Q Consensus 195 ~LE~Dke 201 (532)
.++..++
T Consensus 30 ~l~~R~~ 36 (159)
T PRK09173 30 SLDARAD 36 (159)
T ss_pred HHHHHHH
Confidence 4444443
No 54
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=51.25 E-value=75 Score=34.09 Aligned_cols=49 Identities=8% Similarity=0.168 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 009573 227 ASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGP 275 (532)
Q Consensus 227 ~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~~~ 275 (532)
+++|.++.+.....-+|..+....-.+++++|.+.||+++.+|.+++.+
T Consensus 13 fq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~ 61 (330)
T PF07851_consen 13 FQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKS 61 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4445555555555545555556777778888888888888888888754
No 55
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=50.49 E-value=1.7e+02 Score=27.81 Aligned_cols=10 Identities=10% Similarity=-0.110 Sum_probs=5.6
Q ss_pred ccchhHHHHH
Q 009573 154 SRFHWYHAVL 163 (532)
Q Consensus 154 prrDWRDyFI 163 (532)
..++|.++|.
T Consensus 23 ~~~~~t~~~~ 32 (184)
T PRK13455 23 FSLSNTDFVV 32 (184)
T ss_pred CCCcchHHHH
Confidence 3466766643
No 56
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=49.62 E-value=1.6e+02 Score=28.81 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=9.2
Q ss_pred HHHHHHHHHhHHHHHHHHHh
Q 009573 163 LAVGLLAASGAGTAVFFKKS 182 (532)
Q Consensus 163 IMAtv~gGvgYGlY~L~KrY 182 (532)
|.+.+++.||+|+.+++.++
T Consensus 4 i~~i~~~~vG~~~G~~~~~~ 23 (201)
T PF12072_consen 4 IIAIVALIVGIGIGYLVRKK 23 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444455554444443
No 57
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=48.51 E-value=12 Score=31.69 Aligned_cols=36 Identities=28% Similarity=0.312 Sum_probs=27.5
Q ss_pred hcCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHhhC
Q 009573 64 FLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRV 99 (532)
Q Consensus 64 FL~dP~V~~sPl~kKi~FLesKGLT~eEI~~Al~ra 99 (532)
.|.||..+..=++.-.+||+.-|||++|++..+.|-
T Consensus 12 ~~~~~~~re~f~~dp~a~~~~~~Lt~eE~~al~~rD 47 (77)
T cd07321 12 LLVKPEVKERFKADPEAVLAEYGLTPEEKAALLARD 47 (77)
T ss_pred HhcCHHHHHHHHhCHHHHHHHcCCCHHHHHHHHcCC
Confidence 445566666666666799999999999999888653
No 58
>PRK09793 methyl-accepting protein IV; Provisional
Probab=48.38 E-value=1.8e+02 Score=31.87 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 009573 249 SELMNLLDVQLQEMKSMSNSIRKLEGPS 276 (532)
Q Consensus 249 ~~lt~~ld~q~~ElKSl~~si~~L~~~i 276 (532)
.++....+.|...+..+..++..|...+
T Consensus 285 ~~ls~~~e~qa~~~~~~~~s~~~~~~~~ 312 (533)
T PRK09793 285 NDLSSRTEQQAASLAQTAASMEQLTATV 312 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555554333
No 59
>MTH00169 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=48.37 E-value=18 Score=30.41 Aligned_cols=43 Identities=7% Similarity=-0.047 Sum_probs=25.5
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhcccccc--cchhhcccc
Q 009573 156 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKS--WIRKVVLEE 198 (532)
Q Consensus 156 rDWRDyFIMAtv~gGvgYGlY~L~KrYIlP~Lkp--ptrs~~LE~ 198 (532)
.|---|+--..-+..+...+|.+..|||+|+|.. ..|....+.
T Consensus 4 Ld~~~f~sQ~~Wl~i~f~~ly~l~s~~iLPri~~~l~~R~~~~~~ 48 (67)
T MTH00169 4 LDSVTYLTQYIWTLIILFFLFSLLVNYILPKIQQQLVIRTKGVNS 48 (67)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333343333334444555799999999999987 444433333
No 60
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=47.32 E-value=1.9e+02 Score=29.09 Aligned_cols=28 Identities=7% Similarity=-0.021 Sum_probs=19.8
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhh
Q 009573 156 FHWYHAVLAVGLLAASGAGTAVFFKKSL 183 (532)
Q Consensus 156 rDWRDyFIMAtv~gGvgYGlY~L~KrYI 183 (532)
-.|+-++++.-++.++.+|++++.+.--
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 29 (334)
T TIGR00998 2 KYFLLLLVVLLIVVAGAYAIYWFLVLRD 29 (334)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3577777777777788888887655433
No 61
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=47.18 E-value=31 Score=38.79 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHh--HHHHHHHHHhhc
Q 009573 157 HWYHAVLAVGLLAASG--AGTAVFFKKSLI 184 (532)
Q Consensus 157 DWRDyFIMAtv~gGvg--YGlY~L~KrYIl 184 (532)
.|-|-|+-+.|+.|+. |-+|++.||+|+
T Consensus 367 ~l~d~~~p~avfya~v~P~~s~F~l~k~v~ 396 (546)
T KOG0718|consen 367 HLCDELLPSAVFYALVFPITSYFGLKKFVL 396 (546)
T ss_pred EeechhhhhhhhhhhhHHHHHHHHHHHHee
Confidence 6779999998888875 677888999875
No 62
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=47.15 E-value=1.2e+02 Score=32.09 Aligned_cols=12 Identities=8% Similarity=-0.604 Sum_probs=6.8
Q ss_pred HHHHhHHHHHHH
Q 009573 168 LAASGAGTAVFF 179 (532)
Q Consensus 168 ~gGvgYGlY~L~ 179 (532)
.+|..|++|.=+
T Consensus 32 ~AgA~Y~~yQ~~ 43 (301)
T PF06120_consen 32 GAGAWYYFYQNA 43 (301)
T ss_pred HHHHHHHHHHHH
Confidence 345567766544
No 63
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=45.63 E-value=1.5e+02 Score=27.28 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009573 212 LAEEAAAAAKAAAAAASDVAKASQELLNS 240 (532)
Q Consensus 212 i~eE~aea~ka~aaa~sevakt~qeLl~s 240 (532)
+.+|...++......+.+|.+.+.++...
T Consensus 80 vA~eir~LA~~t~~~~~~I~~~i~~i~~~ 108 (213)
T PF00015_consen 80 VADEIRKLAEQTSESAKEISEIIEEIQEQ 108 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHhhhhhh
Confidence 56777777766666666666666555533
No 64
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=44.36 E-value=1.7e+02 Score=27.82 Aligned_cols=21 Identities=0% Similarity=-0.138 Sum_probs=10.2
Q ss_pred HHHHHHhhcccccccchhhccccccc
Q 009573 176 AVFFKKSLIPRLKSWIRKVVLEEEDD 201 (532)
Q Consensus 176 Y~L~KrYIlP~Lkpptrs~~LE~Dke 201 (532)
+.|.++|++ .|+.+ .+++.++
T Consensus 36 ~~lL~~fl~----kPi~~-~l~~R~~ 56 (167)
T PRK08475 36 VGILWYFAA----KPLKN-FYKSRIN 56 (167)
T ss_pred HHHHHHHHH----HHHHH-HHHHHHH
Confidence 334455443 44555 5555544
No 65
>PF15005 IZUMO: Izumo sperm-egg fusion
Probab=44.15 E-value=1.4e+02 Score=29.02 Aligned_cols=99 Identities=11% Similarity=-0.011 Sum_probs=64.4
Q ss_pred HhHHHHHHHHHhhcccccccchhhccccccchhhhhhcCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 009573 171 SGAGTAVFFKKSLIPRLKSWIRKVVLEEEDDSENKSIAKPSLAEEAAAAA--KAAAAAASDVAKASQELLNSKNEERRYF 248 (532)
Q Consensus 171 vgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke~~~k~e~k~~i~eE~aea~--ka~aaa~sevakt~qeLl~sk~eekk~L 248 (532)
|.-++..|-..||-.+|-.+.++.+++.-.+..+..-++..-.+-.-..+ ....-.+..+-+..+.|..+.-.+--+|
T Consensus 13 v~eal~~L~~~~lP~~~~~~~~~~~~~rl~~~m~~~~~~~~~~~a~~g~vd~~~L~~va~~~~~~lkrl~~s~~kg~~ll 92 (160)
T PF15005_consen 13 VVEALKSLRHDYLPSHLHVEGLQARAQRLLLEMEDFFFLPYAEDAFMGVVDEDTLDKVAWSFKNQLKRLTDSDLKGEPLL 92 (160)
T ss_pred HHHHHHHHHHHhCccccCcchHHHHHHHHHHHhhCccccccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCCcccchHH
Confidence 33456789999999998888888777765554433333332111111111 2233334455567788888888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 009573 249 SELMNLLDVQLQEMKSMSNSI 269 (532)
Q Consensus 249 ~~lt~~ld~q~~ElKSl~~si 269 (532)
.+|...|..|.++||.+..+.
T Consensus 93 ~EL~~~r~~~~~~lk~~lk~f 113 (160)
T PF15005_consen 93 KELVWMRQNQKKELKKALKQF 113 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999885443
No 66
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=43.72 E-value=1.6e+02 Score=31.36 Aligned_cols=24 Identities=8% Similarity=-0.065 Sum_probs=14.2
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHH
Q 009573 154 SRFHWYHAVLAVGLLAASGAGTAV 177 (532)
Q Consensus 154 prrDWRDyFIMAtv~gGvgYGlY~ 177 (532)
.+++|+-.++.+.+++|+++++|+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~ 42 (390)
T PRK15136 19 KRKRALLLLTLLFIIIGVAYGIYW 42 (390)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666655555
No 67
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=43.34 E-value=99 Score=34.64 Aligned_cols=27 Identities=19% Similarity=0.382 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009573 247 YFSELMNLLDVQLQEMKSMSNSIRKLE 273 (532)
Q Consensus 247 ~L~~lt~~ld~q~~ElKSl~~si~~L~ 273 (532)
.|.++-..|+..+..++.+...|..|.
T Consensus 106 ~~~~~~~~l~~~e~~~~~i~~~l~~l~ 132 (569)
T PRK04778 106 EINEIESLLDLIEEDIEQILEELQELL 132 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666677777777777777776666
No 68
>PRK14740 kdbF potassium-transporting ATPase subunit F; Provisional
Probab=42.98 E-value=37 Score=24.82 Aligned_cols=24 Identities=0% Similarity=-0.305 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHH
Q 009573 157 HWYHAVLAVGLLAASGAGTAVFFK 180 (532)
Q Consensus 157 DWRDyFIMAtv~gGvgYGlY~L~K 180 (532)
.|.||+-.|..++=+.|-+|-|.|
T Consensus 2 ~~~~wls~a~a~~Lf~YLv~ALlR 25 (29)
T PRK14740 2 TVLDWLSLALATGLFVYLLVALLR 25 (29)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhc
Confidence 599999888888888898888876
No 69
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=40.42 E-value=2.5e+02 Score=31.96 Aligned_cols=11 Identities=9% Similarity=0.229 Sum_probs=5.8
Q ss_pred HHHHHHHHHhh
Q 009573 173 AGTAVFFKKSL 183 (532)
Q Consensus 173 YGlY~L~KrYI 183 (532)
..++++++++|
T Consensus 311 ~~~~~~~~~~i 321 (921)
T PRK15347 311 SVLFLLLRRYL 321 (921)
T ss_pred HHHHHHHHHHH
Confidence 34455566655
No 70
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=38.64 E-value=3.5e+02 Score=29.94 Aligned_cols=13 Identities=23% Similarity=-0.151 Sum_probs=6.2
Q ss_pred HhHHHHHHHHHhh
Q 009573 171 SGAGTAVFFKKSL 183 (532)
Q Consensus 171 vgYGlY~L~KrYI 183 (532)
++.++++++.|+|
T Consensus 206 ~~~~~~~~i~~~I 218 (554)
T PRK15041 206 VIFAVWFGIKASL 218 (554)
T ss_pred HHHHHHHHHHHHH
Confidence 3444455455544
No 71
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=37.28 E-value=43 Score=33.20 Aligned_cols=31 Identities=19% Similarity=0.197 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 009573 215 EAAAAAKAAAAAASDVAKASQELLNSKNEER 245 (532)
Q Consensus 215 E~aea~ka~aaa~sevakt~qeLl~sk~eek 245 (532)
.+++++...++....-++.-++-+...+|+|
T Consensus 84 a~eaAR~RmQEE~dakA~~~kEKq~q~EEEK 114 (190)
T PF06936_consen 84 AMEAARRRMQEELDAKAEEYKEKQKQEEEEK 114 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555554444444444444443
No 72
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=37.13 E-value=45 Score=31.24 Aligned_cols=29 Identities=7% Similarity=-0.060 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHhhcc
Q 009573 157 HWYHAVLAVGLLAASGAGTAVFFKKSLIP 185 (532)
Q Consensus 157 DWRDyFIMAtv~gGvgYGlY~L~KrYIlP 185 (532)
+|+-+|-.+.++.|++.+++.+.|.|++|
T Consensus 73 ewk~v~~~~~~~i~~s~~~~~~~r~~~~~ 101 (136)
T cd00922 73 EWKTVFGGVLAFIGITGVIFGLQRAFVYG 101 (136)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999988888899999999999999944
No 73
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=36.82 E-value=3e+02 Score=25.26 Aligned_cols=33 Identities=33% Similarity=0.386 Sum_probs=21.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009573 233 ASQELLNSKNEERRYFSELMNLLDVQLQEMKSM 265 (532)
Q Consensus 233 t~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl 265 (532)
+-++|-.-+.+--..|.++.++|+.+.+..+.|
T Consensus 37 ~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l 69 (128)
T PF06295_consen 37 AKQELEQYKQEVNDHFAQTAELLDNLTQDYQKL 69 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455556777777777777777777
No 74
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=36.52 E-value=3.3e+02 Score=26.35 Aligned_cols=32 Identities=3% Similarity=-0.111 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHhhcccccc
Q 009573 158 WYHAVLAVGLLAASGAGTAVFFKKSLIPRLKS 189 (532)
Q Consensus 158 WRDyFIMAtv~gGvgYGlY~L~KrYIlP~Lkp 189 (532)
|-+.|..+..++-+.|-++.++=.-|.-.|..
T Consensus 10 ~sqifw~iI~FlILy~ll~kf~~ppI~~iLe~ 41 (155)
T PRK06569 10 YSQIFWLIVTFGLLYIFVYKFITPKAEEIFNN 41 (155)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33445554444444555555555555555554
No 75
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=36.50 E-value=31 Score=28.66 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=26.4
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhccccccc
Q 009573 156 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKSW 190 (532)
Q Consensus 156 rDWRDyFIMAtv~gGvgYGlY~L~KrYIlP~Lkpp 190 (532)
|-||-..|.++++|.+|..+|-+ ||-|++.++
T Consensus 3 rg~r~~~~~ggfVg~iG~a~Ypi---~~~Pmm~~e 34 (58)
T PF15061_consen 3 RGWRYALFVGGFVGLIGAALYPI---YFRPMMNPE 34 (58)
T ss_pred ccccchhhHHHHHHHHHHHHhhh---hcccccChH
Confidence 67999999999999998776655 688999883
No 76
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=36.09 E-value=2.3e+02 Score=30.59 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=26.2
Q ss_pred cccchhHHHHHHHHHHHHHhHHHHHHHHHhhcc
Q 009573 153 MSRFHWYHAVLAVGLLAASGAGTAVFFKKSLIP 185 (532)
Q Consensus 153 ~prrDWRDyFIMAtv~gGvgYGlY~L~KrYIlP 185 (532)
..++.|+-.+..+++++|+.||+|++.-.|-.|
T Consensus 10 ~~~k~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 42 (352)
T COG1566 10 AKRKRFKLPLTLLVVLAAVLYGGLIWLYYRNHP 42 (352)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 456788888888899999999998887666544
No 77
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=35.05 E-value=4e+02 Score=25.74 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 009573 249 SELMNLLDVQLQEMKSMSNSIRKLEGPSNN 278 (532)
Q Consensus 249 ~~lt~~ld~q~~ElKSl~~si~~L~~~id~ 278 (532)
..+...|....-++..|...|..++..|++
T Consensus 152 ~~l~~~l~~~~g~I~~L~~~I~~~~~~I~~ 181 (184)
T PF05791_consen 152 DELQSILAGENGDIPQLQKQIENLNEEIKK 181 (184)
T ss_dssp HHHHHHHHHTT--HHHHHHHHHHHTGGG-G
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHHh
Confidence 455556666677788888888888766643
No 78
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=34.99 E-value=1.1e+02 Score=31.02 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009573 248 FSELMNLLDVQLQEMKSMSNSIRKLE 273 (532)
Q Consensus 248 L~~lt~~ld~q~~ElKSl~~si~~L~ 273 (532)
|+.+.+-|=+ ..||-+|...|++..
T Consensus 89 ~~~llrQLPs-~tEmp~Ll~dv~q~G 113 (211)
T COG3167 89 FDILLRQLPS-DTEMPNLLADVNQAG 113 (211)
T ss_pred HHHHHHhCCc-ccchhHHHHHHHHhh
Confidence 4444443433 357888888887665
No 79
>PF02465 FliD_N: Flagellar hook-associated protein 2 N-terminus; InterPro: IPR003481 The flagellar hook-associated protein 2 (HAP2 or FliD) is the capping protein for the flagella and forms the distal end of the flagella. The protein plays a role in mucin specific adhesion of the bacteria [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum
Probab=34.74 E-value=63 Score=27.58 Aligned_cols=23 Identities=4% Similarity=0.145 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 009573 251 LMNLLDVQLQEMKSMSNSIRKLE 273 (532)
Q Consensus 251 lt~~ld~q~~ElKSl~~si~~L~ 273 (532)
-..++..+...|..|...+..|.
T Consensus 34 k~sa~~~l~s~l~~l~~~~~~L~ 56 (99)
T PF02465_consen 34 KQSAYGSLNSKLSTLQSALSDLN 56 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444454444
No 80
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.59 E-value=6.6e+02 Score=27.66 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhhcC
Q 009573 248 FSELMNLLDVQLQEMKSMSN-SIRKLEG 274 (532)
Q Consensus 248 L~~lt~~ld~q~~ElKSl~~-si~~L~~ 274 (532)
|+.-+..|+++-+-|++=.. ++..+++
T Consensus 258 LEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 258 LEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 44444444444444444333 3444444
No 81
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=34.19 E-value=2.7e+02 Score=32.17 Aligned_cols=99 Identities=12% Similarity=0.046 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhcccccccchhhccccccchhhhhhcC-----cCHHHHHHHHHHHHHHHHHHHHHHH
Q 009573 160 HAVLAVGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDDSENKSIAK-----PSLAEEAAAAAKAAAAAASDVAKAS 234 (532)
Q Consensus 160 DyFIMAtv~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke~~~k~e~k-----~~i~eE~aea~ka~aaa~sevakt~ 234 (532)
.+|+|..++.++.|-+|++-++.|.|+..=-.-. .-+...+|. .. .+|...+.++-..+..|+.+-=
T Consensus 153 ~~~~~~~~~~~~~~~i~~lr~~vv~Pl~~L~~~a-------~ri~~r~F~~~~~~t~-~~Elg~L~~~FNqMs~EL~~lY 224 (574)
T COG3850 153 QLAGMLLILLLVVFTIYWLRRRVVRPLNQLTSAA-------QRIGRRQFDQRPTDTG-RNELGLLGRAFNQMSGELKKLY 224 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhccCCCCCCCCCC-ccHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999986542222 112234444 22 6777777777777777775444
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009573 235 QELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLE 273 (532)
Q Consensus 235 qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~ 273 (532)
..|= .. ..+.|+.|....+.|.-|=.+=+.|-
T Consensus 225 ~~LE-~r------V~eKT~~L~~~Nq~Ls~LYqssr~L~ 256 (574)
T COG3850 225 ADLE-QR------VEEKTRDLEQKNQRLSFLYQSSRRLH 256 (574)
T ss_pred HHHH-HH------HHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 4433 32 34557777777777776655544443
No 82
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=33.66 E-value=3.7e+02 Score=26.26 Aligned_cols=23 Identities=13% Similarity=-0.009 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhh
Q 009573 161 AVLAVGLLAASGAGTAVFFKKSL 183 (532)
Q Consensus 161 yFIMAtv~gGvgYGlY~L~KrYI 183 (532)
.+++++|.+|+||.+....-+..
T Consensus 6 ~i~~~~vG~~~G~~~~~~~~~~~ 28 (201)
T PF12072_consen 6 AIVALIVGIGIGYLVRKKINRKK 28 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777766655544
No 83
>KOG4075 consensus Cytochrome c oxidase, subunit IV/COX5b [Energy production and conversion]
Probab=33.63 E-value=37 Score=33.33 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=31.0
Q ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHhhcccccc
Q 009573 155 RFHWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKS 189 (532)
Q Consensus 155 rrDWRDyFIMAtv~gGvgYGlY~L~KrYIlP~Lkp 189 (532)
.-.|+-.|+.++++.|++.++.++.+.|++|-+-.
T Consensus 96 ~~ewKtv~g~~~~f~Gl~~~v~l~~~v~vy~~~P~ 130 (167)
T KOG4075|consen 96 SNEWKTVFGVAGFFLGLTISVILFGKVRVYGPLPK 130 (167)
T ss_pred CCcccchhhHHHHHHHHHHHHHHHHhheecCCCCc
Confidence 35799999999999999999999999998887654
No 84
>PRK06770 hypothetical protein; Provisional
Probab=33.50 E-value=2e+02 Score=28.78 Aligned_cols=19 Identities=11% Similarity=0.274 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhhhhH
Q 009573 225 AAASDVAKASQELLNSKNE 243 (532)
Q Consensus 225 aa~sevakt~qeLl~sk~e 243 (532)
.+-.+|.++|+.|.++|..
T Consensus 67 ~tE~~ii~~MH~MtHQKV~ 85 (180)
T PRK06770 67 STEEEIITAMHKMTHQKVK 85 (180)
T ss_pred cCHHHHHHHHHHHHhhhhh
Confidence 3456777888888877653
No 85
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=33.14 E-value=3e+02 Score=27.44 Aligned_cols=11 Identities=9% Similarity=0.253 Sum_probs=7.9
Q ss_pred hHHHHHHHHhh
Q 009573 332 SYMEIMAMVQR 342 (532)
Q Consensus 332 sy~eim~m~qr 342 (532)
-|--||++++.
T Consensus 150 k~r~vlea~~~ 160 (251)
T PF11932_consen 150 KFRRVLEAYQI 160 (251)
T ss_pred HHHHHHHHHHH
Confidence 47778877765
No 86
>PLN03196 MOC1-like protein; Provisional
Probab=32.68 E-value=51 Score=36.46 Aligned_cols=33 Identities=39% Similarity=0.601 Sum_probs=19.8
Q ss_pred CCCCCCcHHH----HHHHHHhcCCCHHHHHHHHhhCC
Q 009573 68 PKVRGSPVIY----RRSFLEKKGLTKEEIDEAFRRVP 100 (532)
Q Consensus 68 P~V~~sPl~k----Ki~FLesKGLT~eEI~~Al~ra~ 100 (532)
|.|-.+.+.+ +++||++.|++..+|-.++.+.+
T Consensus 113 P~iL~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P 149 (487)
T PLN03196 113 PLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYP 149 (487)
T ss_pred cHHhhcCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4444444443 55666666666666666666654
No 87
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=32.55 E-value=3.4e+02 Score=28.91 Aligned_cols=28 Identities=29% Similarity=0.217 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009573 213 AEEAAAAAKAAAAAASDVAKASQELLNS 240 (532)
Q Consensus 213 ~eE~aea~ka~aaa~sevakt~qeLl~s 240 (532)
.+|.....++.......+...+.++...
T Consensus 205 ~dE~g~l~~~~~~m~~~l~~~~~~~~~~ 232 (565)
T PRK10935 205 PNELGLLAKAFNQMSSELHKLYRSLEAS 232 (565)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666555555555555554433
No 88
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=31.77 E-value=3.6e+02 Score=27.78 Aligned_cols=35 Identities=11% Similarity=0.136 Sum_probs=25.8
Q ss_pred HHHHHHHhHHHHHHHHHhhcccccccchhhccccc
Q 009573 165 VGLLAASGAGTAVFFKKSLIPRLKSWIRKVVLEEE 199 (532)
Q Consensus 165 Atv~gGvgYGlY~L~KrYIlP~Lkpptrs~~LE~D 199 (532)
+.+++-++||++..+.-|+.=+..||+....++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 46 (310)
T PRK10559 12 AITLVLVILAFIAIFRAWVFYTESPWTRDARFSAD 46 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCceEEEeE
Confidence 45566677777777777777688888888777765
No 89
>PRK12705 hypothetical protein; Provisional
Probab=31.30 E-value=3e+02 Score=31.24 Aligned_cols=11 Identities=9% Similarity=0.313 Sum_probs=6.7
Q ss_pred HHHHHHhhccc
Q 009573 176 AVFFKKSLIPR 186 (532)
Q Consensus 176 Y~L~KrYIlP~ 186 (532)
|+|+|+|++=.
T Consensus 23 ~~~~~~~~~~~ 33 (508)
T PRK12705 23 VLLKKRQRLAK 33 (508)
T ss_pred HHHHHHHHHHH
Confidence 56667776543
No 90
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=31.13 E-value=44 Score=26.37 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 009573 248 FSELMNLLDVQLQEMKSMSNSI 269 (532)
Q Consensus 248 L~~lt~~ld~q~~ElKSl~~si 269 (532)
|.++-..+..|++|+.-|.+.|
T Consensus 17 l~elk~~l~~Q~kE~~~LRntI 38 (45)
T PF11598_consen 17 LQELKELLRQQIKETRFLRNTI 38 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555555554444
No 91
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=31.05 E-value=31 Score=28.45 Aligned_cols=28 Identities=46% Similarity=0.744 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHh
Q 009573 56 EQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFR 97 (532)
Q Consensus 56 dlv~sAV~FL~dP~V~~sPl~kKi~FLesKGLT~eEI~~Al~ 97 (532)
++++.|++|+.+- +.|-||.++|+.||+
T Consensus 38 ~i~~~A~k~~~ha--------------kRktlt~~DI~~Alk 65 (65)
T smart00803 38 EIVQEALKFMRHS--------------KRTTLTTSDIDSALR 65 (65)
T ss_pred HHHHHHHHHHHHh--------------CCCeecHHHHHHHhC
Confidence 6888999999886 458899999999985
No 92
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=29.21 E-value=4.2e+02 Score=29.95 Aligned_cols=20 Identities=10% Similarity=0.280 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 009573 248 FSELMNLLDVQLQEMKSMSN 267 (532)
Q Consensus 248 L~~lt~~ld~q~~ElKSl~~ 267 (532)
+..+.++.+....+|+.|.+
T Consensus 101 ~~~l~~~~~~L~~~F~~LA~ 120 (475)
T PRK10361 101 IRQMINSEQRLSEQFENLAN 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666655
No 93
>PF14241 DUF4341: Domain of unknown function (DUF4341)
Probab=29.14 E-value=52 Score=26.87 Aligned_cols=21 Identities=29% Similarity=0.170 Sum_probs=18.1
Q ss_pred cccchhHHHHHHHHHHHHHhH
Q 009573 153 MSRFHWYHAVLAVGLLAASGA 173 (532)
Q Consensus 153 ~prrDWRDyFIMAtv~gGvgY 173 (532)
.+.++||=+|+...+++|+.|
T Consensus 41 ~~~~~W~~~fl~Gl~~g~~l~ 61 (62)
T PF14241_consen 41 KPDRDWRLAFLAGLILGGFLA 61 (62)
T ss_pred CCCccHHHHHHHHHHHHHHHh
Confidence 357899999999999999865
No 94
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=29.07 E-value=21 Score=31.04 Aligned_cols=31 Identities=19% Similarity=0.069 Sum_probs=22.0
Q ss_pred CCCCCCcHHHHHHHHHhcCCCHHHHHHHHhh
Q 009573 68 PKVRGSPVIYRRSFLEKKGLTKEEIDEAFRR 98 (532)
Q Consensus 68 P~V~~sPl~kKi~FLesKGLT~eEI~~Al~r 98 (532)
|..+..=++.-.+|++.-|||++|++..+.+
T Consensus 17 p~~rerF~~DPea~~~~~gLt~eE~~aL~~~ 47 (81)
T cd07922 17 PGLIERFQDDPSAVFEEYGLTPAERAALREG 47 (81)
T ss_pred HHHHHHHHHCHHHHHHHcCCCHHHHHHHHcc
Confidence 3333333444468999999999999987754
No 95
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=28.33 E-value=3.9e+02 Score=23.04 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHH
Q 009573 214 EEAAAAAKAAAAAASDVAKASQELLNS--KNEERRYFSELMNLLDVQLQEM 262 (532)
Q Consensus 214 eE~aea~ka~aaa~sevakt~qeLl~s--k~eekk~L~~lt~~ld~q~~El 262 (532)
++..+..+...+....+.+.+.++... ..+++..|.++...++.-.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 125 (181)
T PF12729_consen 75 EERQEIEKEIDEARAEIDEALEEYEKLILSPEEKQLLEEFKEAWKAYRKLR 125 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555556665555555432 3455656665555544443333
No 96
>PRK11677 hypothetical protein; Provisional
Probab=27.98 E-value=3e+02 Score=26.03 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009573 247 YFSELMNLLDVQLQEMKSM 265 (532)
Q Consensus 247 ~L~~lt~~ld~q~~ElKSl 265 (532)
-|.++..+|+.+.+.-+.|
T Consensus 55 HFa~TA~Ll~~L~~~Y~~L 73 (134)
T PRK11677 55 HFARSAELLDTMAKDYRQL 73 (134)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3666666666666666666
No 97
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=27.80 E-value=6.3e+02 Score=25.34 Aligned_cols=25 Identities=16% Similarity=-0.052 Sum_probs=12.4
Q ss_pred HHHHHHhHHHHHHHHHhhcccccccchh
Q 009573 166 GLLAASGAGTAVFFKKSLIPRLKSWIRK 193 (532)
Q Consensus 166 tv~gGvgYGlY~L~KrYIlP~Lkpptrs 193 (532)
.++..++.+++..-.+| .++.+.+.
T Consensus 17 ~~~~~~~l~l~~~~~~~---~~~~~~~~ 41 (276)
T PRK13922 17 ILLLLLALALLLADRRL---GSLSPVRQ 41 (276)
T ss_pred HHHHHHHHHHHhhhccc---ccchHHHH
Confidence 34444455555555555 34444444
No 98
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=27.42 E-value=2.6e+02 Score=22.16 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 009573 247 YFSELMNLLDVQLQEMKSMSNSIRKLEGPS 276 (532)
Q Consensus 247 ~L~~lt~~ld~q~~ElKSl~~si~~L~~~i 276 (532)
.|..|+++|..++++||....+++.|+++|
T Consensus 9 ql~~l~~~l~elk~~l~~Q~kE~~~LRntI 38 (45)
T PF11598_consen 9 QLSELNQMLQELKELLRQQIKETRFLRNTI 38 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888888888888888888888888665
No 99
>PF05405 Mt_ATP-synt_B: Mitochondrial ATP synthase B chain precursor (ATP-synt_B); InterPro: IPR008688 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit B from the F0 complex in F-ATPases found in mitochondria of eukaryotes (metazoa, viridiplantae (plants and green algae), jakobidae and the malawimonadidae). The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_X 2CLY_D.
Probab=27.35 E-value=1.4e+02 Score=27.77 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=2.7
Q ss_pred HHHHhHHHHHHHHHhhcccccccchh
Q 009573 168 LAASGAGTAVFFKKSLIPRLKSWIRK 193 (532)
Q Consensus 168 ~gGvgYGlY~L~KrYIlP~Lkpptrs 193 (532)
+++...|++.++.+|+-|.+..|--.
T Consensus 19 v~~~f~~f~~~~~k~~g~~i~~~ld~ 44 (163)
T PF05405_consen 19 VALCFIIFIIFIYKKFGPSIAEWLDE 44 (163)
T ss_dssp ---------------------CHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33344445556667777777775544
No 100
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=27.11 E-value=4.1e+02 Score=22.96 Aligned_cols=52 Identities=17% Similarity=0.232 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009573 219 AAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIR 270 (532)
Q Consensus 219 a~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~ 270 (532)
.....+..+.-+.+++++|++.++.-...|..+-.-+..=.+-++.|+.-|.
T Consensus 16 ~l~~Q~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd 67 (88)
T PF10241_consen 16 ILALQAQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLD 67 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555567777889999988887777776666555555555555554443
No 101
>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []. The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.
Probab=26.48 E-value=60 Score=32.81 Aligned_cols=27 Identities=33% Similarity=0.582 Sum_probs=23.0
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHhhCC
Q 009573 74 PVIYRRSFLEKKGLTKEEIDEAFRRVP 100 (532)
Q Consensus 74 Pl~kKi~FLesKGLT~eEI~~Al~ra~ 100 (532)
.+..|++||++-|++++||-..+.+.+
T Consensus 242 ~l~~~i~~L~~lG~s~~ei~~mv~~~P 268 (345)
T PF02536_consen 242 KLKPKIEFLQSLGFSEEEIAKMVRRFP 268 (345)
T ss_dssp HHHHHHHHHHTTT--HHHHHHHHHHSG
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHhCc
Confidence 488999999999999999999999884
No 102
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=25.98 E-value=5.6e+02 Score=24.09 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 009573 221 KAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDV 257 (532)
Q Consensus 221 ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~ 257 (532)
++++...++|+.-+..++..-.+-+|.++..+..|.+
T Consensus 52 ~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~k 88 (131)
T PF10158_consen 52 NALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEK 88 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555444444444433444445555554444
No 103
>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []. The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.
Probab=25.92 E-value=60 Score=32.80 Aligned_cols=29 Identities=31% Similarity=0.564 Sum_probs=25.1
Q ss_pred CcHHHHHHHHHhcCCCHHHHHHHHhhCCC
Q 009573 73 SPVIYRRSFLEKKGLTKEEIDEAFRRVPD 101 (532)
Q Consensus 73 sPl~kKi~FLesKGLT~eEI~~Al~ra~~ 101 (532)
.-+..+++||++-|++.++|-.+|.+.+.
T Consensus 173 ~~~~~~v~~L~~~G~~~~~i~~~l~~~P~ 201 (345)
T PF02536_consen 173 SELKPKVEFLRSLGFSKEDIGKLLRKCPR 201 (345)
T ss_dssp CCCHHHHHHHHHCTT-GHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhcccchhhhHHhhcccc
Confidence 34889999999999999999999999864
No 104
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=25.66 E-value=1.1e+02 Score=31.22 Aligned_cols=65 Identities=17% Similarity=0.137 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccCCCcc
Q 009573 216 AAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSNNSGRTSL 284 (532)
Q Consensus 216 ~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~~~id~f~~~~~ 284 (532)
+.+.....+.-+.-++....+|+..-+. +..++++|..+.++|..|..++..+-+..+.|...++
T Consensus 54 l~~~l~~l~~v~~~~a~aapdL~~~l~~----~~~~s~tL~~~~~~L~~lL~~~~~~a~~~~~~l~~n~ 118 (267)
T PF11887_consen 54 LREDLRNLADVADTYADAAPDLLDALDN----LTTTSRTLVDQRQQLDALLLSATGLADTGTDFLADNR 118 (267)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3334444444444444444444444222 7788889999999999999999999888877766554
No 105
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=25.16 E-value=56 Score=20.80 Aligned_cols=23 Identities=22% Similarity=0.493 Sum_probs=16.2
Q ss_pred CCCCCCCCc---HHHHHHHHHhcCCC
Q 009573 66 SHPKVRGSP---VIYRRSFLEKKGLT 88 (532)
Q Consensus 66 ~dP~V~~sP---l~kKi~FLesKGLT 88 (532)
..|.|-... +..|+.||++.|++
T Consensus 6 ~~P~il~~~~~~l~~~~~~l~~~g~~ 31 (31)
T smart00733 6 KFPQILGYSEKKLKPKVEFLKELGFS 31 (31)
T ss_pred hCcCcccccHHHhhHHHHHHHHcCCC
Confidence 345554444 77899999999875
No 106
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=25.07 E-value=71 Score=35.34 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=16.6
Q ss_pred chhHHHHHHHHHHHHHhHHHHHH
Q 009573 156 FHWYHAVLAVGLLAASGAGTAVF 178 (532)
Q Consensus 156 rDWRDyFIMAtv~gGvgYGlY~L 178 (532)
+.+|.+|+..++++|+|||...+
T Consensus 2 ~~~~k~l~~~~l~~~~~ygG~v~ 24 (582)
T PF09731_consen 2 SSFRKFLLYTTLLGGVGYGGGVY 24 (582)
T ss_pred CchhhHHHHHHHHHHHHHHHHHH
Confidence 45677778878888888876544
No 107
>PLN03196 MOC1-like protein; Provisional
Probab=24.65 E-value=97 Score=34.35 Aligned_cols=29 Identities=17% Similarity=0.465 Sum_probs=25.6
Q ss_pred CcHHHHHHHHHhcCCCHHHHHHHHhhCCC
Q 009573 73 SPVIYRRSFLEKKGLTKEEIDEAFRRVPD 101 (532)
Q Consensus 73 sPl~kKi~FLesKGLT~eEI~~Al~ra~~ 101 (532)
..+.+|++||++-|++.+||-.++.+.+.
T Consensus 338 ~kl~~kvefL~~~Gls~edI~~mv~k~P~ 366 (487)
T PLN03196 338 NVALKHVEFLRGRGFSAQDVAKMVVRCPQ 366 (487)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhCCc
Confidence 34678999999999999999999999854
No 108
>PHA00426 type II holin
Probab=24.61 E-value=1.1e+02 Score=26.11 Aligned_cols=28 Identities=4% Similarity=-0.120 Sum_probs=19.0
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhh
Q 009573 156 FHWYHAVLAVGLLAASGAGTAVFFKKSL 183 (532)
Q Consensus 156 rDWRDyFIMAtv~gGvgYGlY~L~KrYI 183 (532)
-+|.+||..|++.--|.--...++++++
T Consensus 32 lsl~~WfyvAai~YTVvQig~~v~~ki~ 59 (67)
T PHA00426 32 LSLNEWFYVAAIAYTVVQIGAKVVDTII 59 (67)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999998876555444445555554
No 109
>PF09945 DUF2177: Predicted membrane protein (DUF2177); InterPro: IPR018687 This family of putative membrane proteins has no known function.
Probab=24.41 E-value=1.1e+02 Score=28.78 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=28.0
Q ss_pred cccchhHHHHHHHHHHHHHhHHHHHHHHHhhc
Q 009573 153 MSRFHWYHAVLAVGLLAASGAGTAVFFKKSLI 184 (532)
Q Consensus 153 ~prrDWRDyFIMAtv~gGvgYGlY~L~KrYIl 184 (532)
..+-+|.+.++.+.++|-++||.|-|+--.++
T Consensus 68 l~~~s~~~a~~~GallGl~~YgtYdlTN~Atl 99 (128)
T PF09945_consen 68 LAAGSWLRALLYGALLGLFAYGTYDLTNLATL 99 (128)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45569999999999999999999999987764
No 110
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=24.25 E-value=3.5e+02 Score=27.60 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 009573 211 SLAEEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMN 253 (532)
Q Consensus 211 ~i~eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~ 253 (532)
.+.+|+.++..+-+.+..++..-|+.|+..-.+--.+|.+|+.
T Consensus 162 ~l~eE~e~ae~k~e~~~e~~~~~M~~~l~~E~e~~~~l~~lv~ 204 (244)
T cd07595 162 ALKDEYEEAELKLEQCRDALATDMYEFLAKEAEIASYLIDLIE 204 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4678888888888888888888899988664555455555554
No 111
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=24.04 E-value=3.1e+02 Score=27.56 Aligned_cols=50 Identities=16% Similarity=0.329 Sum_probs=37.0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHH
Q 009573 210 PSLAEEAAAAAKAAAAAASDVAKASQELLNSKNEERRY-FSELMNLLDVQLQE 261 (532)
Q Consensus 210 ~~i~eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~-L~~lt~~ld~q~~E 261 (532)
..+-.|+.|.+....+...|| +.|..++ .|+=+|.+ |+++|+...+.-+|
T Consensus 50 ~eLkNeLREVREELkEKmeEI-KQIKdiM-DKDFDKL~EFVEIMKeMQkDMDE 100 (205)
T PF15079_consen 50 QELKNELREVREELKEKMEEI-KQIKDIM-DKDFDKLHEFVEIMKEMQKDMDE 100 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHH-hhhHHHHHHHHHHHHHHHHhHHH
Confidence 336678888888888888898 8888888 55655543 78888877666555
No 112
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=23.79 E-value=5.9e+02 Score=23.84 Aligned_cols=16 Identities=6% Similarity=0.069 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 009573 248 FSELMNLLDVQLQEMK 263 (532)
Q Consensus 248 L~~lt~~ld~q~~ElK 263 (532)
+..+.+.++.+...++
T Consensus 76 ~~~~~~~i~~i~~~~~ 91 (262)
T smart00283 76 VEEAVSAVEELEESSD 91 (262)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444433333
No 113
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=23.59 E-value=2.9e+02 Score=27.55 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=20.5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009573 234 SQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLE 273 (532)
Q Consensus 234 ~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~ 273 (532)
++.|....+--+.|...+.+.++++.++|.+|...|..+.
T Consensus 58 ~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 58 YRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334455555566666666666666555444
No 114
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=23.50 E-value=9.7e+02 Score=27.53 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 009573 254 LLDVQLQEMKSMSNSI 269 (532)
Q Consensus 254 ~ld~q~~ElKSl~~si 269 (532)
.+..+.+|||.=.+.|
T Consensus 447 ~l~~isHelrtPL~~i 462 (914)
T PRK11466 447 FLAAMSHEIRTPLYGI 462 (914)
T ss_pred HHHHhHHHHhhHHHHH
Confidence 3444566666544444
No 115
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=23.39 E-value=4.6e+02 Score=29.05 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 009573 212 LAEEAAAAAKAAAAAASDVAKASQELLNSKNEE 244 (532)
Q Consensus 212 i~eE~aea~ka~aaa~sevakt~qeLl~sk~ee 244 (532)
.++|..+++...+.++.+|...+.+....-++.
T Consensus 399 VA~EVR~LA~~s~~at~~I~~~i~~~~~~v~~~ 431 (554)
T PRK15041 399 VAGEVRNLAQRSAQAAREIKSLIEDSVGKVDVG 431 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777778777776655443333
No 116
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=23.32 E-value=1.8e+02 Score=32.82 Aligned_cols=54 Identities=9% Similarity=0.109 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009573 213 AEEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLE 273 (532)
Q Consensus 213 ~eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~ 273 (532)
.+|+.+..+....++.++.+.+++|... +.++-+-|+.++.|++.|+..|..+.
T Consensus 71 LteqQ~kasELEKqLaaLrqElq~~saq-------~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELDVLNKQ-------RGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555555555566666664333333322 33456667778888888888884443
No 117
>PF08405 Calici_PP_N: Viral polyprotein N-terminal; InterPro: IPR013614 This domain is found at the N terminus of non-structural viral polyproteins of the Caliciviridae subfamily. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity, 0044419 interspecies interaction between organisms
Probab=23.27 E-value=6e+02 Score=27.77 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009573 217 AAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSN 267 (532)
Q Consensus 217 aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~ 267 (532)
.+.++.++.|+=++.-...--+.+--.+|.-+.+++++||--+++.|-|+.
T Consensus 283 ~~~l~~iE~AVid~E~~~~n~~T~llrdk~s~~~f~k~LD~EEekaRkls~ 333 (358)
T PF08405_consen 283 PATLRNIEDAVIDMEALSNNHLTALLRDKNSGAAFMKTLDMEEEKARKLST 333 (358)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHhhhHHHHHHHHhh
Confidence 455566666665543221111222233444578889999988888887754
No 118
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=23.03 E-value=3.3e+02 Score=22.52 Aligned_cols=34 Identities=12% Similarity=0.198 Sum_probs=15.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009573 232 KASQELLNSKNEERRYFSELMNLLDVQLQEMKSM 265 (532)
Q Consensus 232 kt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl 265 (532)
..+.+++.+..-+...+..+.+.+.....+|...
T Consensus 73 ~~l~~ll~~~~~D~~~i~a~~~~~~~~~~~l~~~ 106 (125)
T PF13801_consen 73 QELRALLAAPPPDEAAIEALLEEIREAQAELRQE 106 (125)
T ss_dssp HHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455444433444555555554444444433
No 119
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=22.60 E-value=2.8e+02 Score=24.24 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 009573 249 SELMNLLDVQLQEMKSMSNSIRKLE 273 (532)
Q Consensus 249 ~~lt~~ld~q~~ElKSl~~si~~L~ 273 (532)
..+.+.++...++|+.++..|..|+
T Consensus 80 ~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 80 KRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555543
No 120
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=22.60 E-value=2.5e+02 Score=26.37 Aligned_cols=84 Identities=17% Similarity=0.207 Sum_probs=45.4
Q ss_pred HhhcccccccchhhccccccchhhhhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 009573 181 KSLIPRLKSWIRKVVLEEEDDSENKSIAKPSLAEEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQ 260 (532)
Q Consensus 181 rYIlP~Lkpptrs~~LE~Dke~~~k~e~k~~i~eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ 260 (532)
=|.+=+++.|+=+ | -..-.+-. +.++.+.-.+.|.+....|-.+|.+-...|..+-..||.+..
T Consensus 19 GY~Y~wwKGws~s-------D--~M~vTrr~-------m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~e 82 (126)
T PF07889_consen 19 GYGYMWWKGWSFS-------D--LMFVTRRS-------MSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKE 82 (126)
T ss_pred HheeeeecCCchh-------H--HHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 6777778888777 2 01111211 112333333333333444444444433446677777777777
Q ss_pred HHHHHHHHHhhhcCCCCccC
Q 009573 261 EMKSMSNSIRKLEGPSNNSG 280 (532)
Q Consensus 261 ElKSl~~si~~L~~~id~f~ 280 (532)
--+.+.+.+..++.-+..|.
T Consensus 83 i~~~i~~eV~~v~~dv~~i~ 102 (126)
T PF07889_consen 83 ISKQIKDEVTEVREDVSQIG 102 (126)
T ss_pred HHHHHHHHHHHHHhhHHHHH
Confidence 77777777777776664443
No 121
>TIGR00778 ahpD_dom alkylhydroperoxidase AhpD family core domain. Members of the family include the alkylhydroperoxidase AhpD of Mycobacterium tuberculosis, a macrophage infectivity potentiator peptide of Legionella pneumophila, and an uncharacterized peptide in the tetrachloroethene reductive dehalogenase operon of Dehalospirillum multivorans. We suggest that many peptides containing this domain may have alkylhydroperoxidase or related antioxidant activity.
Probab=22.59 E-value=93 Score=23.06 Aligned_cols=40 Identities=28% Similarity=0.296 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHh
Q 009573 55 EEQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFR 97 (532)
Q Consensus 55 edlv~sAV~FL~dP~V~~sPl~kKi~FLesKGLT~eEI~~Al~ 97 (532)
.+||.-++.....= .-=+..=...+...|+|++||.++++
T Consensus 8 reli~l~~s~~~~C---~yc~~~H~~~a~~~G~~~~ei~~v~~ 47 (50)
T TIGR00778 8 KELIAIAVSQINGC---GYCLDAHTKLARKAGVTAEELAEALA 47 (50)
T ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 36777777766541 11133445567889999999999885
No 122
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.49 E-value=3.9e+02 Score=28.08 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 009573 248 FSELMNLLDVQLQEMKSMSNSI 269 (532)
Q Consensus 248 L~~lt~~ld~q~~ElKSl~~si 269 (532)
|.+..+.|+++..|++.+..++
T Consensus 181 ~e~~~~~L~~qk~e~~~l~~~~ 202 (265)
T COG3883 181 LETQLNSLNSQKAEKNALIAAL 202 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554444
No 123
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=22.40 E-value=1e+02 Score=29.25 Aligned_cols=28 Identities=11% Similarity=-0.053 Sum_probs=24.9
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHHHH
Q 009573 154 SRFHWYHAVLAVGLLAASGAGTAVFFKK 181 (532)
Q Consensus 154 prrDWRDyFIMAtv~gGvgYGlY~L~Kr 181 (532)
..|..-+|+-.++++||+|.++|-+.+|
T Consensus 31 nERTfl~wl~~~vllg~l~~~l~n~~~~ 58 (126)
T COG5264 31 NERTFLSWLSVTVLLGGLGFALYNSGDR 58 (126)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 5788889999999999999999998884
No 124
>PF10660 MitoNEET_N: Iron-containing outer mitochondrial membrane protein N-terminus ; InterPro: IPR019610 The CDGSH iron sulphur domain are a group of iron-sulphur (Fe-S) clusters and a unique 39 amino acid CDGSH domain [C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H]. The CDGSH iron sulphur domain protein (also referred to as mitoNEET) is an integral membrane protein located in the outer mitochondrial membrane and whose function may be to transport iron into the mitochondria []. Iron in turn is essential for the function of several mitochondrial enzymes. This entry represents the N-terminal of the mitoNEET and Miner-type proteins that carry a CDGSH-type cluster-binding domain (IPR018967 from INTERPRO) that coordinate a redox-active 2Fe-2S cluster. In the outer mitochondrian membrane (OMM), the CDGSH 2Fe-2S-containing domain is oriented towards the cytoplasm and is tethered to the mitochondrial membrane by the N-terminal domain found in higher vertebrates [, , ]. The whole protein regulates oxidative capacity and may function in electron transfer, for instance in redox reactions with metabolic intermediates, cofactors and/or proteins localized at the OMM.; GO: 0051537 2 iron, 2 sulfur cluster binding, 0043231 intracellular membrane-bounded organelle; PDB: 2R13_A 3REE_A 2QD0_B.
Probab=22.37 E-value=29 Score=29.16 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=0.0
Q ss_pred cccchhHHHHHHHHHHHHHhHHHH
Q 009573 153 MSRFHWYHAVLAVGLLAASGAGTA 176 (532)
Q Consensus 153 ~prrDWRDyFIMAtv~gGvgYGlY 176 (532)
+...||-..+-.++++||+||-+|
T Consensus 31 Ls~kdWl~Lvp~~~~va~igYlay 54 (64)
T PF10660_consen 31 LSVKDWLALVPFAAAVAGIGYLAY 54 (64)
T ss_dssp ------------------------
T ss_pred ccHHHHHHHHhHHHHHHHHHHHhh
Confidence 455677777777778888887655
No 125
>KOG4580 consensus Component of vacuolar transporter chaperone (Vtc) involved in vacuole fusion [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=22.20 E-value=1.1e+02 Score=28.52 Aligned_cols=28 Identities=11% Similarity=-0.053 Sum_probs=24.7
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHHHH
Q 009573 154 SRFHWYHAVLAVGLLAASGAGTAVFFKK 181 (532)
Q Consensus 154 prrDWRDyFIMAtv~gGvgYGlY~L~Kr 181 (532)
..|..-+|+-.++++||+|.++|-+.+|
T Consensus 16 NERTFl~WL~~tvlLg~l~~~l~n~~~~ 43 (112)
T KOG4580|consen 16 NERTFLSWLSVTVLLGGLGFALYNSGDR 43 (112)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5688889999999999999999998884
No 126
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=22.13 E-value=5.2e+02 Score=26.27 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009573 230 VAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLE 273 (532)
Q Consensus 230 vakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~ 273 (532)
+.+-+......+++..+.-.++++.|++..+++++|...+..++
T Consensus 100 l~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 100 LGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555666666667889999998889999999888877
No 127
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=21.98 E-value=5e+02 Score=24.70 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHhhcc-------cccccchh
Q 009573 157 HWYHAVLAVGLLAASGAGTAVFFKKSLIP-------RLKSWIRK 193 (532)
Q Consensus 157 DWRDyFIMAtv~gGvgYGlY~L~KrYIlP-------~Lkpptrs 193 (532)
-|+-|.=|.++.||+..|-|.|+ +|+.| .|-|..+.
T Consensus 4 ~w~~W~K~~~~G~~ii~~G~~l~-~y~tPTeEeL~~r~sPELrk 46 (128)
T PF07960_consen 4 NWRRWAKMLVAGAVIIGGGPALV-KYTTPTEEELFKRYSPELRK 46 (128)
T ss_pred hHHHHHHHHHhcceeEeechHHh-eecCCCHHHHHHhcCHHHHH
Confidence 35555444444444433333333 35554 34555555
No 128
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=21.94 E-value=5.3e+02 Score=28.18 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009573 212 LAEEAAAAAKAAAAAASDVAKASQELLN 239 (532)
Q Consensus 212 i~eE~aea~ka~aaa~sevakt~qeLl~ 239 (532)
.++|..+++.....++.+|...+.+...
T Consensus 397 VA~EVr~LA~~t~~st~~I~~~i~~~~~ 424 (553)
T PRK15048 397 VAGEVRNLASRSAQAAKEIKALIEDSVS 424 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777776665443
No 129
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=21.77 E-value=1.1e+02 Score=26.75 Aligned_cols=27 Identities=19% Similarity=-0.026 Sum_probs=20.7
Q ss_pred ccchhHHHHHHHHHHHHHhHHHHHHHH
Q 009573 154 SRFHWYHAVLAVGLLAASGAGTAVFFK 180 (532)
Q Consensus 154 prrDWRDyFIMAtv~gGvgYGlY~L~K 180 (532)
.-++|.||.+.++++++....+|..-|
T Consensus 18 ~~~R~sDy~~~a~~ta~~p~~~~~~~~ 44 (86)
T PF10785_consen 18 RYFRPSDYAIWAGATAASPPLGYYMER 44 (86)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346899999999998888766665544
No 130
>PF15141 DUF4574: Domain of unknown function (DUF4574)
Probab=21.76 E-value=42 Score=29.73 Aligned_cols=15 Identities=13% Similarity=0.005 Sum_probs=9.7
Q ss_pred HHHHHHhHHHHHHHH
Q 009573 166 GLLAASGAGTAVFFK 180 (532)
Q Consensus 166 tv~gGvgYGlY~L~K 180 (532)
..+||+|||++.|+.
T Consensus 14 lG~GGvG~~L~~Lvt 28 (84)
T PF15141_consen 14 LGFGGVGYALFVLVT 28 (84)
T ss_pred HHccchhheeeeEeC
Confidence 334577888877653
No 131
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=21.51 E-value=1.2e+02 Score=27.89 Aligned_cols=28 Identities=11% Similarity=-0.286 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHhhc
Q 009573 157 HWYHAVLAVGLLAASGAGTAVFFKKSLI 184 (532)
Q Consensus 157 DWRDyFIMAtv~gGvgYGlY~L~KrYIl 184 (532)
.|.=|++.+.+++++++++|.+.|+|--
T Consensus 20 a~GWwll~~lll~~~~~~~~~~~r~~~~ 47 (146)
T PF14316_consen 20 APGWWLLLALLLLLLILLLWRLWRRWRR 47 (146)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3556788888899999999999998865
No 132
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=21.48 E-value=1e+02 Score=26.01 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhcccc
Q 009573 162 VLAVGLLAASGAGTAVFFKKSLIPRL 187 (532)
Q Consensus 162 FIMAtv~gGvgYGlY~L~KrYIlP~L 187 (532)
+|..++++|+.-|+| ++|+|+.=.|
T Consensus 2 ~iilali~G~~~Gff-~ar~~~~k~l 26 (64)
T PF03672_consen 2 LIILALIVGAVIGFF-IARKYMEKQL 26 (64)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 355566666655544 5777765444
No 133
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=21.44 E-value=2.5e+02 Score=29.68 Aligned_cols=66 Identities=12% Similarity=0.061 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccC
Q 009573 214 EEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSNNSG 280 (532)
Q Consensus 214 eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~~~id~f~ 280 (532)
+|+..++.+.+....+|..-.++ +....+++..|..-.+....+..|+.....+..+..+....|+
T Consensus 204 ~eL~~lk~~l~~~~~ei~~~~~~-l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t 269 (312)
T smart00787 204 TELDRAKEKLKKLLQEIMIKVKK-LEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFT 269 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555555555555555333333 2333444444444444445555555555444444443333333
No 134
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=21.36 E-value=4.6e+02 Score=28.38 Aligned_cols=29 Identities=10% Similarity=-0.052 Sum_probs=14.6
Q ss_pred cchhHHHH-HHHHHHHHHhHHHHHHHHHhhc
Q 009573 155 RFHWYHAV-LAVGLLAASGAGTAVFFKKSLI 184 (532)
Q Consensus 155 rrDWRDyF-IMAtv~gGvgYGlY~L~KrYIl 184 (532)
.+|||--+ -|-....++ -..+.-+|.|+-
T Consensus 215 ~kDWR~hleqm~~~~~~I-~~~~~~~~~~L~ 244 (359)
T PF10498_consen 215 AKDWRSHLEQMKQHKKSI-ESALPETKSQLD 244 (359)
T ss_pred cchHHHHHHHHHHHHHHH-HHhhhHHHHHHH
Confidence 38999554 344444443 233444555543
No 135
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=21.20 E-value=4.3e+02 Score=27.86 Aligned_cols=56 Identities=11% Similarity=0.170 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhcCCC
Q 009573 214 EEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELM------NLLDVQLQEMKSMSNSIRKLEGPS 276 (532)
Q Consensus 214 eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt------~~ld~q~~ElKSl~~si~~L~~~i 276 (532)
......++.+..++.++.+.++.+.+. ++... ..+..+.+||+.|..+|.++-++.
T Consensus 67 ~~g~s~lqtae~aL~~~~~~lqrirel-------avqaan~t~s~~dr~~iq~Ei~~l~~el~~iantt 128 (360)
T COG1344 67 QDGISKLQTAEGALSEISKILQRIKEL-------AVQAANGTLSDADRAAIQKEIEQLLDELDNIANTT 128 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344455567777777777776666533 33333 367888999999999999988766
No 136
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=21.13 E-value=7.4e+02 Score=23.77 Aligned_cols=12 Identities=25% Similarity=0.135 Sum_probs=4.9
Q ss_pred HHHHHHHHHhHH
Q 009573 163 LAVGLLAASGAG 174 (532)
Q Consensus 163 IMAtv~gGvgYG 174 (532)
+.+.++|+++|+
T Consensus 34 ~l~~l~~~~~~~ 45 (199)
T PF10112_consen 34 LLSLLIGAVAFA 45 (199)
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 137
>PRK11637 AmiB activator; Provisional
Probab=21.11 E-value=3.5e+02 Score=29.01 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 009573 228 SDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPS 276 (532)
Q Consensus 228 sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~~~i 276 (532)
.++...-.+|...+.+-.+.+..|-+.+.....+++.|......|+..|
T Consensus 201 ~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I 249 (428)
T PRK11637 201 YEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSI 249 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444344444554444444445555544444444333
No 138
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=21.02 E-value=1.3e+02 Score=34.64 Aligned_cols=62 Identities=11% Similarity=0.132 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccCC
Q 009573 211 SLAEEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSNNSGR 281 (532)
Q Consensus 211 ~i~eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~~~id~f~~ 281 (532)
+|.+|+....|++.+.+..-+.+..+|-.+++ ..-+|+.+..||-..--|.+||++|.+...
T Consensus 5 KLq~eIdr~lkKv~Egve~Fd~i~ek~~~~~n---------~sqkeK~e~DLKkEIKKLQRlRdQIKtW~s 66 (575)
T KOG2150|consen 5 KLQQEIDRCLKKVDEGVEIFDEIYEKLHSANN---------VSQKEKLESDLKKEIKKLQRLRDQIKTWQS 66 (575)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC---------hhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 57888999999999999888888888887743 344566666666666667777777766544
No 139
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=20.98 E-value=8.9e+02 Score=24.61 Aligned_cols=18 Identities=22% Similarity=0.530 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 009573 254 LLDVQLQEMKSMSNSIRK 271 (532)
Q Consensus 254 ~ld~q~~ElKSl~~si~~ 271 (532)
.++.+.+++..|+.-++.
T Consensus 279 ~~~~~~~~~~~l~~~i~~ 296 (457)
T TIGR01386 279 VLESNLEELERLSRMVSD 296 (457)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444443333
No 140
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=20.98 E-value=1.4e+02 Score=26.87 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=30.2
Q ss_pred cccchhHHH---HHHHHHHHHHhHHHHHHHHHhhcccccccchh
Q 009573 153 MSRFHWYHA---VLAVGLLAASGAGTAVFFKKSLIPRLKSWIRK 193 (532)
Q Consensus 153 ~prrDWRDy---FIMAtv~gGvgYGlY~L~KrYIlP~Lkpptrs 193 (532)
.+...|... +|..-|..|+.|-+|.++=|=++=.||.-..+
T Consensus 29 ss~~~ws~vv~v~i~~lvaVg~~YL~y~~fLkDlIlv~KAkrqr 72 (91)
T PF01708_consen 29 SSGLPWSRVVEVAIFTLVAVGCLYLAYTWFLKDLILVLKAKRQR 72 (91)
T ss_pred CCCCcceeEeeeeehHHHHHHHHHHHHHHHHHHHhheeeeccCC
Confidence 456788876 55555667888999999888888777775444
No 141
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=20.83 E-value=4.7e+02 Score=26.56 Aligned_cols=69 Identities=22% Similarity=0.213 Sum_probs=45.1
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCccCC
Q 009573 212 LAEEAAAAA-KAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEG-PSNNSGR 281 (532)
Q Consensus 212 i~eE~aea~-ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~~-~id~f~~ 281 (532)
..+++|+.+ +|...++.+-.+ .++.+..++++-..|.+-...|-..+..++-|..-|.+|-+ ..++|..
T Consensus 108 YWk~lAE~RR~AL~eaL~ENe~-Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~ie~l~~~~~~~~e~ 178 (200)
T PF07412_consen 108 YWKELAEERRKALEEALEENEK-LHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEVIERLTGQELDNLES 178 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccC
Confidence 557888877 888899988855 55566677888777776666666667777777777777775 3444433
No 142
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=20.58 E-value=1.5e+02 Score=23.98 Aligned_cols=7 Identities=0% Similarity=-0.325 Sum_probs=4.8
Q ss_pred cchhHHH
Q 009573 155 RFHWYHA 161 (532)
Q Consensus 155 rrDWRDy 161 (532)
.++|-|.
T Consensus 6 ~~r~~D~ 12 (59)
T PF14880_consen 6 GRRLADI 12 (59)
T ss_pred hHHHHHH
Confidence 4677777
No 143
>PF11282 DUF3082: Protein of unknown function (DUF3082); InterPro: IPR021434 This family of proteins has no known function.
Probab=20.57 E-value=1.3e+02 Score=26.50 Aligned_cols=25 Identities=4% Similarity=-0.061 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhc
Q 009573 160 HAVLAVGLLAASGAGTAVFFKKSLI 184 (532)
Q Consensus 160 DyFIMAtv~gGvgYGlY~L~KrYIl 184 (532)
..|+.+.+.++++|++|.|+.+-..
T Consensus 6 ~~l~Ga~~ag~la~~ly~lt~~i~~ 30 (82)
T PF11282_consen 6 RCLSGALIAGGLAYGLYFLTTSIAA 30 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888889999999986554
No 144
>PF12821 DUF3815: Protein of unknown function (DUF3815); InterPro: IPR024528 This domain is found in uncharacterised predicted membrane proteins.
Probab=20.54 E-value=1.3e+02 Score=27.18 Aligned_cols=25 Identities=20% Similarity=0.115 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhcc
Q 009573 161 AVLAVGLLAASGAGTAVFFKKSLIP 185 (532)
Q Consensus 161 yFIMAtv~gGvgYGlY~L~KrYIlP 185 (532)
.+..+++.|+++|++|.+..++-.+
T Consensus 23 ~l~~~~l~g~~~~~v~~~~~~~~~~ 47 (130)
T PF12821_consen 23 ALPWAGLIGALGWLVYLLLSAFGLG 47 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3667788999999999988875444
No 145
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=20.46 E-value=1.3e+02 Score=28.64 Aligned_cols=27 Identities=22% Similarity=0.124 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHhh
Q 009573 157 HWYHAVLAVGLLAASGAGTAVFFKKSL 183 (532)
Q Consensus 157 DWRDyFIMAtv~gGvgYGlY~L~KrYI 183 (532)
.|.=+.+.++++..+|.|+|.++||-.
T Consensus 118 ~~~i~~~i~g~ll~i~~giy~~~r~~~ 144 (145)
T PF10661_consen 118 SPTILLSIGGILLAICGGIYVVLRKVW 144 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344334456677888899999999853
No 146
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=20.32 E-value=3e+02 Score=32.37 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=8.5
Q ss_pred HHHHhcCCCHHHHHHHH
Q 009573 80 SFLEKKGLTKEEIDEAF 96 (532)
Q Consensus 80 ~FLesKGLT~eEI~~Al 96 (532)
+||++..=..+.+...+
T Consensus 402 ~fl~~~~~~~dsl~~l~ 418 (717)
T PF10168_consen 402 EFLESDEEDKDSLQELA 418 (717)
T ss_pred HHhcccCCccchhhhhc
Confidence 46665544444454443
No 147
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=20.14 E-value=6.2e+02 Score=22.49 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHhhcccccc
Q 009573 157 HWYHAVLAVGLLAASGAGTAVFFKKSLIPRLKS 189 (532)
Q Consensus 157 DWRDyFIMAtv~gGvgYGlY~L~KrYIlP~Lkp 189 (532)
+|-++.+.+++..++++-++ ++-+|++++|+-
T Consensus 3 ~i~~~ii~~~~~i~l~ii~~-~~~~~~~~~l~~ 34 (108)
T PF09682_consen 3 QITNIIITVALSIVLAIIAG-IIVKYVIKYLKK 34 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 34555555444443433333 334577777654
No 148
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=20.10 E-value=5e+02 Score=27.14 Aligned_cols=9 Identities=22% Similarity=0.593 Sum_probs=7.0
Q ss_pred cccchhHHH
Q 009573 153 MSRFHWYHA 161 (532)
Q Consensus 153 ~prrDWRDy 161 (532)
..+.+|++|
T Consensus 134 ~aK~~WYeW 142 (325)
T PF08317_consen 134 EAKKMWYEW 142 (325)
T ss_pred HHHHHHHHH
Confidence 467789888
Done!