Query 009573
Match_columns 532
No_of_seqs 167 out of 254
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 08:14:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009573.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009573hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ff5_A PEX14P, peroxisomal bio 99.8 4.6E-20 1.6E-24 144.4 5.4 50 50-99 5-54 (54)
2 2w84_A Peroxisomal membrane pr 99.8 9.1E-20 3.1E-24 149.1 6.1 53 51-103 11-63 (70)
3 3qh9_A Liprin-beta-2; coiled-c 54.4 77 0.0026 26.8 8.8 54 212-269 24-77 (81)
4 1v54_J Cytochrome C oxidase po 52.3 11 0.00039 29.7 3.3 28 154-181 25-53 (59)
5 2y69_J Cytochrome C oxidase po 50.9 12 0.00039 31.5 3.3 28 154-181 46-74 (80)
6 3nmd_A CGMP dependent protein 48.3 11 0.00037 31.2 2.7 39 236-274 26-68 (72)
7 3m66_A Mterf3, mterf domain-co 46.5 17 0.00059 34.4 4.3 35 66-100 64-101 (270)
8 1v54_D Cytochrome C oxidase su 45.9 21 0.0007 32.9 4.5 31 156-186 76-106 (147)
9 2y69_D Cytochrome C oxidase su 41.7 25 0.00087 33.1 4.5 31 156-186 98-128 (169)
10 3g67_A Methyl-accepting chemot 38.8 1.6E+02 0.0055 27.9 9.6 29 212-240 117-145 (213)
11 4fp9_B Mterf domain-containing 36.2 22 0.00075 36.0 3.4 35 66-100 69-103 (335)
12 3hnw_A Uncharacterized protein 35.0 2.3E+02 0.0078 25.4 9.5 62 212-273 66-130 (138)
13 3zx6_A HAMP, methyl-accepting 34.9 1.8E+02 0.0061 28.7 9.6 29 212-240 186-214 (341)
14 3p8c_F ABL interactor 2; actin 28.3 2.9E+02 0.0098 25.8 9.1 27 250-276 72-98 (159)
15 2d9s_A CBL E3 ubiquitin protei 28.3 75 0.0026 24.9 4.4 34 68-101 2-35 (53)
16 1yku_A Hypothetical protein PX 27.7 59 0.002 29.7 4.4 79 170-272 41-119 (136)
17 1wp7_A Fusion protein; fusion 27.5 69 0.0024 27.5 4.4 31 248-278 15-45 (89)
18 3n27_A Fusion glycoprotein F0, 27.5 1.2E+02 0.0041 25.6 5.8 33 248-280 15-47 (80)
19 1qu7_A Methyl-accepting chemot 27.4 1.5E+02 0.0053 27.9 7.4 28 212-239 106-133 (227)
20 2eqb_B RAB guanine nucleotide 26.3 3.2E+02 0.011 23.6 9.3 51 219-269 13-63 (97)
21 2fyz_A Fusion protein, fusion 26.1 77 0.0026 25.5 4.3 44 229-279 14-57 (63)
22 1ify_A HHR23A, UV excision rep 24.9 72 0.0025 23.6 3.7 31 71-101 4-34 (49)
23 3mva_O Transcription terminati 24.5 46 0.0016 32.8 3.3 27 75-101 86-112 (343)
24 3trt_A Vimentin; cytoskeleton, 23.0 2.7E+02 0.0094 21.8 8.2 18 248-265 58-75 (77)
25 3r1f_A ESX-1 secretion-associa 22.7 78 0.0027 27.6 4.1 29 72-100 5-40 (135)
26 1svf_A Protein (fusion glycopr 22.7 81 0.0028 25.4 3.8 42 230-278 12-53 (64)
27 2wvr_A Geminin; DNA replicatio 22.3 4E+02 0.014 25.9 9.1 71 210-281 96-168 (209)
28 3etw_A Adhesin A; antiparallel 22.1 2.2E+02 0.0076 25.3 6.9 68 212-279 14-101 (119)
29 2oo9_A E3 ubiquitin-protein li 21.0 1.1E+02 0.0038 23.4 4.0 29 73-101 2-30 (46)
30 1f5n_A Interferon-induced guan 20.1 3.6E+02 0.012 29.2 9.4 60 212-273 489-550 (592)
No 1
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=99.79 E-value=4.6e-20 Score=144.39 Aligned_cols=50 Identities=54% Similarity=0.800 Sum_probs=47.9
Q ss_pred CccchHHHHHHHHHhcCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHhhC
Q 009573 50 SEPMREEQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRV 99 (532)
Q Consensus 50 s~~~Redlv~sAV~FL~dP~V~~sPl~kKi~FLesKGLT~eEI~~Al~ra 99 (532)
..++|++||++||+||+||+|+++|+++||+||++||||++||++||+|+
T Consensus 5 ~~~~Re~li~~Av~FL~dp~V~~sp~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 5 SPEFREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp CHHHHHHHHHHHHHHHHCTTGGGSCHHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHhCChhhhcCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 45789999999999999999999999999999999999999999999985
No 2
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=99.78 E-value=9.1e-20 Score=149.14 Aligned_cols=53 Identities=49% Similarity=0.695 Sum_probs=49.9
Q ss_pred ccchHHHHHHHHHhcCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHhhCCCCC
Q 009573 51 EPMREEQVQNAVKFLSHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVPDPP 103 (532)
Q Consensus 51 ~~~Redlv~sAV~FL~dP~V~~sPl~kKi~FLesKGLT~eEI~~Al~ra~~~~ 103 (532)
..+||+||++||+||+||+|+++|+++||+||++||||++||++||+|++...
T Consensus 11 ~~~Re~li~~Av~FLqdp~V~~sp~~~K~~FL~sKGLt~eEI~~Al~ra~~~~ 63 (70)
T 2w84_A 11 VLPREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDMAFQQSGTAA 63 (70)
T ss_dssp SCCCHHHHHHHHHHHCSTTGGGSCHHHHHHHHHHTTCCHHHHHHHHHHHTCCC
T ss_pred CCchHHHHHHHHHHhCChhhhhCCHHHHHHHHHHcCCCHHHHHHHHHHccCCC
Confidence 35799999999999999999999999999999999999999999999997654
No 3
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=54.43 E-value=77 Score=26.77 Aligned_cols=54 Identities=13% Similarity=0.179 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009573 212 LAEEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSI 269 (532)
Q Consensus 212 i~eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si 269 (532)
+.+|+..++-.+.+.-++=...=.+|.++|+| |..|-+.|..-..||+.|...|
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~E----l~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKATKAE----VAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHhhHHHHHHHHHHH
Confidence 89999999999999998888889999999887 8899999999999999998876
No 4
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=52.26 E-value=11 Score=29.73 Aligned_cols=28 Identities=7% Similarity=-0.296 Sum_probs=21.3
Q ss_pred ccchhHHH-HHHHHHHHHHhHHHHHHHHH
Q 009573 154 SRFHWYHA-VLAVGLLAASGAGTAVFFKK 181 (532)
Q Consensus 154 prrDWRDy-FIMAtv~gGvgYGlY~L~Kr 181 (532)
++-|+-=| +.|+..++|++|++|.|++-
T Consensus 25 g~sd~~Ly~~t~~l~~~g~~~~~y~l~~~ 53 (59)
T 1v54_J 25 GATDNILYRVTMTLCLGGTLYSLYCLGWA 53 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCceeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566544 77888888999999999864
No 5
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=50.93 E-value=12 Score=31.47 Aligned_cols=28 Identities=7% Similarity=-0.296 Sum_probs=21.7
Q ss_pred ccchhHHH-HHHHHHHHHHhHHHHHHHHH
Q 009573 154 SRFHWYHA-VLAVGLLAASGAGTAVFFKK 181 (532)
Q Consensus 154 prrDWRDy-FIMAtv~gGvgYGlY~L~Kr 181 (532)
++-||-=| +.|+..++|++|++|.|++-
T Consensus 46 grsd~~Ly~~t~~l~~~G~~~~ly~l~~~ 74 (80)
T 2y69_J 46 GATDNILYRVTMTLCLGGTLYSLYCLGWA 74 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccceeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566555 77888888999999999864
No 6
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=48.26 E-value=11 Score=31.20 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=19.3
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhcC
Q 009573 236 ELLNSKNEERRYFSELMNLLDVQ----LQEMKSMSNSIRKLEG 274 (532)
Q Consensus 236 eLl~sk~eekk~L~~lt~~ld~q----~~ElKSl~~si~~L~~ 274 (532)
+++..|+++.+..+.+++.|++. ..+++.|...|..++.
T Consensus 26 ~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 26 YALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33445555555555555544443 4444445555555543
No 7
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=46.49 E-value=17 Score=34.37 Aligned_cols=35 Identities=17% Similarity=0.403 Sum_probs=27.6
Q ss_pred CCCCCCCCcHH---HHHHHHHhcCCCHHHHHHHHhhCC
Q 009573 66 SHPKVRGSPVI---YRRSFLEKKGLTKEEIDEAFRRVP 100 (532)
Q Consensus 66 ~dP~V~~sPl~---kKi~FLesKGLT~eEI~~Al~ra~ 100 (532)
.+|.+-...++ .+++||++.|++.++|-.+|.+.+
T Consensus 64 ~~P~lL~~~~e~l~p~v~~L~~~Gls~~~i~~~l~~~P 101 (270)
T 3m66_A 64 KNHAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKAP 101 (270)
T ss_dssp HCTTGGGSCHHHHHHHHHHHHHTTCCHHHHHHHHHHST
T ss_pred hCChhhhCCHHHHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 35666666655 799999999999999999998774
No 8
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=45.87 E-value=21 Score=32.94 Aligned_cols=31 Identities=16% Similarity=0.065 Sum_probs=27.5
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhccc
Q 009573 156 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPR 186 (532)
Q Consensus 156 rDWRDyFIMAtv~gGvgYGlY~L~KrYIlP~ 186 (532)
-.|+-+|..+.++.|++.++|.+.|.|+.|-
T Consensus 76 gewK~v~g~v~~~i~~s~~~f~~~r~~v~~p 106 (147)
T 1v54_D 76 NEWKTVVGAAMFFIGFTALLLIWEKHYVYGP 106 (147)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 4899999988888999999999999998754
No 9
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=41.71 E-value=25 Score=33.05 Aligned_cols=31 Identities=16% Similarity=0.065 Sum_probs=27.4
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHhhccc
Q 009573 156 FHWYHAVLAVGLLAASGAGTAVFFKKSLIPR 186 (532)
Q Consensus 156 rDWRDyFIMAtv~gGvgYGlY~L~KrYIlP~ 186 (532)
-.|+-+|..+.++.|++.++|.+.|.|+.|-
T Consensus 98 gEWK~V~ggv~~~i~~s~~~f~~~r~~v~~p 128 (169)
T 2y69_D 98 NEWKTVVGAAMFFIGFTALLLIWEKHYVYGP 128 (169)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 5899999988888999999999999999754
No 10
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=38.79 E-value=1.6e+02 Score=27.94 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009573 212 LAEEAAAAAKAAAAAASDVAKASQELLNS 240 (532)
Q Consensus 212 i~eE~aea~ka~aaa~sevakt~qeLl~s 240 (532)
+++|...++.....++.+|.+.+.++...
T Consensus 117 VA~Evr~La~~t~~~~~~I~~~i~~i~~~ 145 (213)
T 3g67_A 117 VANEVQNLSNETNEVTKQIVEKAREILES 145 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777766666666666666665544
No 11
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=36.23 E-value=22 Score=35.98 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=32.2
Q ss_pred CCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHhhCC
Q 009573 66 SHPKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVP 100 (532)
Q Consensus 66 ~dP~V~~sPl~kKi~FLesKGLT~eEI~~Al~ra~ 100 (532)
.+|.+....+..+|.||.+.||+.++|-.+|++.+
T Consensus 69 ~~P~il~~~l~~~i~~L~~LGls~e~V~kiL~k~P 103 (335)
T 4fp9_B 69 VRRGASLQQLLDIISEFILLGLNPEPVCVVLKKSP 103 (335)
T ss_dssp HCSSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCG
T ss_pred hCcccchhHHHHHHHHHHHcCCCHHHHHHHHHhCh
Confidence 46999888899999999999999999999999984
No 12
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=35.01 E-value=2.3e+02 Score=25.37 Aligned_cols=62 Identities=19% Similarity=0.159 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009573 212 LAEEAAAAAKAAAAAASDV---AKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLE 273 (532)
Q Consensus 212 i~eE~aea~ka~aaa~sev---akt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~ 273 (532)
|++|.-.+......-..++ .+-+..|.+...+.+-.+..+.+.++....+++.|...+.+|+
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554443333333222 3334444444344444477777777888888888877777776
No 13
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=34.89 E-value=1.8e+02 Score=28.70 Aligned_cols=29 Identities=21% Similarity=0.270 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009573 212 LAEEAAAAAKAAAAAASDVAKASQELLNS 240 (532)
Q Consensus 212 i~eE~aea~ka~aaa~sevakt~qeLl~s 240 (532)
.++|...++.....++.+|...+.++...
T Consensus 186 VAdEVRkLAe~t~~at~~I~~~i~~~~~~ 214 (341)
T 3zx6_A 186 VAGEVRNLAQRSAQAAREIKSLIEDSVGK 214 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888888888888888777766544
No 14
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=28.28 E-value=2.9e+02 Score=25.78 Aligned_cols=27 Identities=22% Similarity=0.533 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 009573 250 ELMNLLDVQLQEMKSMSNSIRKLEGPS 276 (532)
Q Consensus 250 ~lt~~ld~q~~ElKSl~~si~~L~~~i 276 (532)
.++++||-|..+|+.|.++|+.|...+
T Consensus 72 ~ll~lLd~Q~~~l~~mes~v~~l~Q~v 98 (159)
T 3p8c_F 72 NVLQMLDIQASQLRRMESSINHISQTV 98 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999998877443
No 15
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=28.26 E-value=75 Score=24.94 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=30.3
Q ss_pred CCCCCCcHHHHHHHHHhcCCCHHHHHHHHhhCCC
Q 009573 68 PKVRGSPVIYRRSFLEKKGLTKEEIDEAFRRVPD 101 (532)
Q Consensus 68 P~V~~sPl~kKi~FLesKGLT~eEI~~Al~ra~~ 101 (532)
|.+...|++.+|+=|-+-|.+.+++..||..+..
T Consensus 2 ~~~~~~~~e~~I~~L~~lGF~r~~ai~AL~~a~n 35 (53)
T 2d9s_A 2 SSGSSGQLSSEIERLMSQGYSYQDIQKALVIAHN 35 (53)
T ss_dssp CCSCCSCSHHHHHHHHHHTCCHHHHHHHHHHTTT
T ss_pred CCCCccchHHHHHHHHHcCCCHHHHHHHHHHhcC
Confidence 5667788999999999999999999999998854
No 16
>1yku_A Hypothetical protein PXO2-61; globin fold, unknown function; 1.49A {Bacillus anthracis} PDB: 3pmc_A
Probab=27.73 E-value=59 Score=29.74 Aligned_cols=79 Identities=19% Similarity=0.275 Sum_probs=52.3
Q ss_pred HHhHHHHHHHHHhhcccccccchhhccccccchhhhhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 009573 170 ASGAGTAVFFKKSLIPRLKSWIRKVVLEEEDDSENKSIAKPSLAEEAAAAAKAAAAAASDVAKASQELLNSKNEERRYFS 249 (532)
Q Consensus 170 GvgYGlY~L~KrYIlP~Lkpptrs~~LE~Dke~~~k~e~k~~i~eE~aea~ka~aaa~sevakt~qeLl~sk~eekk~L~ 249 (532)
.=|.++|.|++.|+.+-+ + +| ++..++.++|-.=.+..--|.++.-.-+..|+.+.
T Consensus 41 ~NG~~m~~lvi~~~~~~~-----s--~~-----------------~ie~la~KiA~ER~eA~~NIgeFVYN~N~GR~~i~ 96 (136)
T 1yku_A 41 KNGEHLLSAFIMYLKEEI-----S--LQ-----------------EIEITSKKIARERIDAKVNIAEFIHNTNVAKIEIM 96 (136)
T ss_dssp HHHHHHHHHHHHHHTTSS-----C--GG-----------------GGHHHHHHHHHHHHHHTCCTHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhccC-----C--HH-----------------HHHHHHHHHHHHHhhccccHHHHHHHcchhHHHHH
Confidence 446678999999887655 1 11 11222222222222222337888877788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 009573 250 ELMNLLDVQLQEMKSMSNSIRKL 272 (532)
Q Consensus 250 ~lt~~ld~q~~ElKSl~~si~~L 272 (532)
+.+..++-..+||+.+...|+.+
T Consensus 97 ~~l~~~~~~~~eL~~~i~kIN~~ 119 (136)
T 1yku_A 97 NILTLLNPDLQQYQALVKKINQF 119 (136)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998888654
No 17
>1wp7_A Fusion protein; fusion core, heptad repeat, viral protein; 2.20A {Nipah virus} PDB: 1wp8_A
Probab=27.52 E-value=69 Score=27.48 Aligned_cols=31 Identities=3% Similarity=-0.036 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 009573 248 FSELMNLLDVQLQEMKSMSNSIRKLEGPSNN 278 (532)
Q Consensus 248 L~~lt~~ld~q~~ElKSl~~si~~L~~~id~ 278 (532)
|..+.++.....+.++.+..+|..+++.||+
T Consensus 15 I~~TNeAV~EVt~glsqlaVAIqaIQD~IN~ 45 (89)
T 1wp7_A 15 IESTNEAVVKLQETAEKTVYVLTALQDYGGS 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566666666666666666667777766654
No 18
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=27.49 E-value=1.2e+02 Score=25.58 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccC
Q 009573 248 FSELMNLLDVQLQEMKSMSNSIRKLEGPSNNSG 280 (532)
Q Consensus 248 L~~lt~~ld~q~~ElKSl~~si~~L~~~id~f~ 280 (532)
+..+.++.....+-++.+-..|..+|+.||+-+
T Consensus 15 Iq~TN~AV~eL~~a~~~t~iAIqaIQd~IN~~~ 47 (80)
T 3n27_A 15 IESTNEAVVKLQETAEKTVYVLTALQDYSGGSG 47 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 555566666666666666666777776665543
No 19
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=27.45 E-value=1.5e+02 Score=27.89 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009573 212 LAEEAAAAAKAAAAAASDVAKASQELLN 239 (532)
Q Consensus 212 i~eE~aea~ka~aaa~sevakt~qeLl~ 239 (532)
.++|...++.....++.+|.+.+.++..
T Consensus 106 VA~EVRkLA~~t~~at~~I~~~i~~~~~ 133 (227)
T 1qu7_A 106 VAGEVRNLAQRSAQAAREIKSLIEDSVG 133 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777666543
No 20
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.25 E-value=3.2e+02 Score=23.64 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009573 219 AAKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSI 269 (532)
Q Consensus 219 a~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si 269 (532)
........++++..-...|+..-.+++..=...-+.+..+.+||-.|+.+|
T Consensus 13 ~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 13 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566666666666655555555555566677777777777665
No 21
>2fyz_A Fusion protein, fusion glycoprotein F0; mumps virus fusion protein core, protein binding; 2.20A {Mumps virus} SCOP: h.3.2.1
Probab=26.08 E-value=77 Score=25.47 Aligned_cols=44 Identities=11% Similarity=0.084 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 009573 229 DVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSNNS 279 (532)
Q Consensus 229 evakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~~~id~f 279 (532)
.-++.|..|..+ |..+.++.....+.++.+...+..+++.||+.
T Consensus 14 qNA~~I~~LK~S-------i~~TNeAV~el~~g~~~lavAv~~iQd~IN~~ 57 (63)
T 2fyz_A 14 TNARAIAAMKNS-------IQATNRAVFEVKEGTQRLAIAVQAIQDHINTI 57 (63)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566666 77788888888888888888898888766654
No 22
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.90 E-value=72 Score=23.62 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=26.9
Q ss_pred CCCcHHHHHHHHHhcCCCHHHHHHHHhhCCC
Q 009573 71 RGSPVIYRRSFLEKKGLTKEEIDEAFRRVPD 101 (532)
Q Consensus 71 ~~sPl~kKi~FLesKGLT~eEI~~Al~ra~~ 101 (532)
.....+.+|+=|..-|.+.+++..||++++.
T Consensus 4 ~~~~~~~~i~~L~~MGF~~~~a~~AL~~~~~ 34 (49)
T 1ify_A 4 TGSEYETMLTEIMSMGYERERVVAALRASYN 34 (49)
T ss_dssp CSHHHHHHHHHHHHTTCCHHHHHHHHHTTTS
T ss_pred CCccCHHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 3455788999999999999999999998864
No 23
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=24.55 E-value=46 Score=32.83 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHhhCCC
Q 009573 75 VIYRRSFLEKKGLTKEEIDEAFRRVPD 101 (532)
Q Consensus 75 l~kKi~FLesKGLT~eEI~~Al~ra~~ 101 (532)
+.-+++||++.|+++++|-.++.+.+.
T Consensus 86 l~p~l~fL~~lG~s~~~i~~il~~~P~ 112 (343)
T 3mva_O 86 LSKRWDLWRKIVTSDLEIVNILERSPE 112 (343)
T ss_dssp HHHHHHHHTTTSSCHHHHHHHHHHCSH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHCCH
Confidence 778899999999999999999998864
No 24
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=23.02 E-value=2.7e+02 Score=21.76 Aligned_cols=18 Identities=11% Similarity=0.126 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009573 248 FSELMNLLDVQLQEMKSM 265 (532)
Q Consensus 248 L~~lt~~ld~q~~ElKSl 265 (532)
+.++...+.+..-||-+|
T Consensus 58 i~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 58 STEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 445555544445454444
No 25
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=22.74 E-value=78 Score=27.58 Aligned_cols=29 Identities=17% Similarity=0.046 Sum_probs=24.5
Q ss_pred CCcHHHHHHHHHh-------cCCCHHHHHHHHhhCC
Q 009573 72 GSPVIYRRSFLEK-------KGLTKEEIDEAFRRVP 100 (532)
Q Consensus 72 ~sPl~kKi~FLes-------KGLT~eEI~~Al~ra~ 100 (532)
...+..|+.+|.. |+||.+||-+++...|
T Consensus 5 ~~~~~~RL~~L~~~~~~~~~~~~T~~elA~~~~~~G 40 (135)
T 3r1f_A 5 STTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEG 40 (135)
T ss_dssp -CCHHHHHHHHHHHCCCTTSCCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHcccC
Confidence 3568999999999 7899999999998443
No 26
>1svf_A Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Probab=22.67 E-value=81 Score=25.41 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 009573 230 VAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLEGPSNN 278 (532)
Q Consensus 230 vakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~~~id~ 278 (532)
.++.|..|..+ |..+.++.....+.++.+...+..|++.||+
T Consensus 12 Na~~I~~LK~S-------i~~TNeAV~el~~g~~~lavAv~~lQd~IN~ 53 (64)
T 1svf_A 12 NAAAILNLKNA-------IQKTNAAVADVVQATQSLGTAVQAVQDHINS 53 (64)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555 6677777777777777777777777755544
No 27
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=22.32 E-value=4e+02 Score=25.92 Aligned_cols=71 Identities=18% Similarity=0.173 Sum_probs=40.1
Q ss_pred cCHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCccCC
Q 009573 210 PSLAEEAAAAA-KAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLE-GPSNNSGR 281 (532)
Q Consensus 210 ~~i~eE~aea~-ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~-~~id~f~~ 281 (532)
...-+++|+.+ +|..+++.+- +..++.+.+++++...|..-...|-....+.+-|..-|.+|- +..++|..
T Consensus 96 e~YWk~lAE~RR~AL~eaLeEN-~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~~~~~~~e~ 168 (209)
T 2wvr_A 96 SQYWKEVAEKRRKALYEALKEN-EKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFES 168 (209)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC
Confidence 34678888887 8888888887 555566667777766665555555555555555544455543 34555544
No 28
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=22.05 E-value=2.2e+02 Score=25.33 Aligned_cols=68 Identities=15% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHhh
Q 009573 212 LAEEAAAAAKAAAAAA---SDVAKASQELLNSKNEERRYF-----------------SELMNLLDVQLQEMKSMSNSIRK 271 (532)
Q Consensus 212 i~eE~aea~ka~aaa~---sevakt~qeLl~sk~eekk~L-----------------~~lt~~ld~q~~ElKSl~~si~~ 271 (532)
|+.|...+.+...+.+ ...+.+.+.-|+.+.+.++.+ .+.-+......+++|.|-.+|..
T Consensus 14 Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~keLd~~ik~ 93 (119)
T 3etw_A 14 LDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALKKLEAEMEQ 93 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcCCCCcc
Q 009573 272 LEGPSNNS 279 (532)
Q Consensus 272 L~~~id~f 279 (532)
.+..||+|
T Consensus 94 qekiIdnF 101 (119)
T 3etw_A 94 QKAVISDF 101 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
No 29
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=20.96 E-value=1.1e+02 Score=23.42 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=26.6
Q ss_pred CcHHHHHHHHHhcCCCHHHHHHHHhhCCC
Q 009573 73 SPVIYRRSFLEKKGLTKEEIDEAFRRVPD 101 (532)
Q Consensus 73 sPl~kKi~FLesKGLT~eEI~~Al~ra~~ 101 (532)
++|+..|+=|-+-|.+.+.+..||..+..
T Consensus 2 ~~~e~~I~~L~s~Gf~~~~~~rAL~ia~N 30 (46)
T 2oo9_A 2 SQLSSEIENLMSQGYSYQDIQKALVIAQN 30 (46)
T ss_dssp CHHHHHHHHHHHTTBCHHHHHHHHHHTTT
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHhhc
Confidence 67999999999999999999999998854
No 30
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=20.12 E-value=3.6e+02 Score=29.25 Aligned_cols=60 Identities=18% Similarity=0.279 Sum_probs=37.3
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009573 212 LAEEAAAA--AKAAAAAASDVAKASQELLNSKNEERRYFSELMNLLDVQLQEMKSMSNSIRKLE 273 (532)
Q Consensus 212 i~eE~aea--~ka~aaa~sevakt~qeLl~sk~eekk~L~~lt~~ld~q~~ElKSl~~si~~L~ 273 (532)
+++|.+++ +++++..+.+..+-.++++..+ +|-|=..+.++.++++.|.+.+..+..++-
T Consensus 489 ~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~--~~~~~e~~~ql~~kme~~~~~~~~e~~~~~ 550 (592)
T 1f5n_A 489 IEVERVKAESAQASAKMLHEMQRKNEQMMEQK--ERSYQEHLKQLTEKMENDRVQLLKEQERTL 550 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433 3555555666666677777553 444556777777888888888876665543
Done!