Query 009574
Match_columns 532
No_of_seqs 652 out of 3470
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 14:46:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11670 antiporter inner memb 100.0 3.3E-50 7.1E-55 414.2 36.2 341 80-424 12-356 (369)
2 KOG3022 Predicted ATPase, nucl 100.0 1.1E-43 2.3E-48 336.0 24.5 290 130-424 2-298 (300)
3 CHL00175 minD septum-site dete 100.0 1E-31 2.2E-36 269.5 23.2 237 173-420 10-255 (281)
4 PRK13232 nifH nitrogenase redu 100.0 1E-31 2.2E-36 268.3 21.9 232 178-420 1-247 (273)
5 TIGR01969 minD_arch cell divis 100.0 1.3E-31 2.9E-36 263.9 22.5 227 179-421 1-234 (251)
6 PRK13235 nifH nitrogenase redu 100.0 1E-30 2.2E-35 261.2 22.3 234 178-420 1-249 (274)
7 PRK13236 nitrogenase reductase 100.0 5E-31 1.1E-35 265.5 19.8 245 177-435 5-265 (296)
8 COG2894 MinD Septum formation 100.0 1.5E-31 3.3E-36 244.8 13.9 229 177-419 1-247 (272)
9 TIGR03371 cellulose_yhjQ cellu 100.0 4.1E-31 8.9E-36 259.8 17.6 234 178-421 1-245 (246)
10 PRK13233 nifH nitrogenase redu 100.0 1.1E-30 2.5E-35 261.0 20.3 233 177-420 1-250 (275)
11 PRK10818 cell division inhibit 100.0 6.2E-30 1.3E-34 255.1 21.3 231 177-419 1-248 (270)
12 cd02040 NifH NifH gene encodes 100.0 6E-30 1.3E-34 255.1 20.7 234 178-423 1-251 (270)
13 CHL00072 chlL photochlorophyll 100.0 2.2E-29 4.7E-34 252.5 23.6 224 181-421 3-247 (290)
14 TIGR01968 minD_bact septum sit 100.0 1E-29 2.2E-34 251.9 21.1 229 178-419 1-238 (261)
15 COG0455 flhG Antiactivator of 100.0 1.3E-29 2.8E-34 248.0 21.0 232 177-421 1-242 (262)
16 PRK13234 nifH nitrogenase redu 100.0 7E-30 1.5E-34 257.1 19.0 233 177-421 3-252 (295)
17 PRK13185 chlL protochlorophyll 100.0 2.4E-29 5.1E-34 250.9 21.3 229 177-422 1-250 (270)
18 PRK13230 nitrogenase reductase 100.0 2.9E-29 6.2E-34 251.4 21.8 232 178-420 1-248 (279)
19 COG0489 Mrp ATPases involved i 100.0 3.7E-29 8E-34 246.9 20.3 205 175-389 54-263 (265)
20 PRK13231 nitrogenase reductase 100.0 3E-29 6.5E-34 249.3 18.6 234 177-421 1-242 (264)
21 PRK10037 cell division protein 100.0 2E-29 4.3E-34 248.5 17.1 230 178-427 1-245 (250)
22 PRK13869 plasmid-partitioning 100.0 1.2E-29 2.6E-34 265.2 16.3 239 176-424 119-394 (405)
23 TIGR01287 nifH nitrogenase iro 100.0 7.8E-29 1.7E-33 247.8 20.6 231 179-421 1-248 (275)
24 TIGR01281 DPOR_bchL light-inde 100.0 9.7E-29 2.1E-33 246.2 19.2 227 180-422 2-248 (268)
25 cd02032 Bchl_like This family 100.0 3.8E-28 8.2E-33 241.8 20.4 225 179-420 1-246 (267)
26 PF06564 YhjQ: YhjQ protein; 100.0 3.2E-28 6.9E-33 233.6 16.7 229 178-423 1-241 (243)
27 cd02037 MRP-like MRP (Multiple 100.0 8.7E-28 1.9E-32 222.6 18.9 167 180-385 1-169 (169)
28 TIGR03453 partition_RepA plasm 100.0 5.9E-28 1.3E-32 252.5 18.8 236 176-421 102-374 (387)
29 COG1192 Soj ATPases involved i 100.0 3.7E-28 8E-33 240.8 15.7 237 177-424 1-257 (259)
30 PHA02518 ParA-like protein; Pr 100.0 1.2E-27 2.6E-32 229.5 17.8 204 179-422 1-210 (211)
31 PRK13705 plasmid-partitioning 99.9 2.8E-27 6.2E-32 245.8 17.1 220 176-404 104-355 (388)
32 cd02036 MinD Bacterial cell di 99.9 1.2E-26 2.7E-31 216.4 17.8 179 180-410 1-179 (179)
33 PHA02519 plasmid partition pro 99.9 8E-27 1.7E-31 241.9 17.7 235 176-419 104-378 (387)
34 TIGR03815 CpaE_hom_Actino heli 99.9 4.1E-26 8.8E-31 233.2 21.7 219 175-415 90-320 (322)
35 cd02117 NifH_like This family 99.9 4.4E-26 9.5E-31 219.1 18.8 194 179-384 1-212 (212)
36 cd02033 BchX Chlorophyllide re 99.9 6.1E-25 1.3E-29 221.7 23.4 227 175-422 28-277 (329)
37 TIGR02016 BchX chlorophyllide 99.9 4.6E-25 1E-29 221.7 20.4 230 179-423 1-254 (296)
38 COG1149 MinD superfamily P-loo 99.9 3E-24 6.6E-29 204.3 19.8 224 178-418 1-281 (284)
39 PF06155 DUF971: Protein of un 99.9 2.6E-25 5.7E-30 182.7 7.2 87 431-518 2-89 (89)
40 TIGR01007 eps_fam capsular exo 99.9 7.7E-24 1.7E-28 202.3 16.2 170 178-353 17-194 (204)
41 COG3640 CooC CO dehydrogenase 99.9 4.6E-23 9.9E-28 192.2 20.0 219 180-419 2-252 (255)
42 PRK13849 putative crown gall t 99.9 9.4E-24 2E-28 204.5 15.8 206 178-417 1-215 (231)
43 cd03110 Fer4_NifH_child This p 99.9 1.3E-23 2.9E-28 196.4 16.2 178 180-382 1-179 (179)
44 TIGR03018 pepcterm_TyrKin exop 99.9 1.2E-23 2.6E-28 201.3 16.2 164 176-347 33-207 (207)
45 TIGR03029 EpsG chain length de 99.9 3.6E-23 7.8E-28 206.8 16.7 166 177-348 102-274 (274)
46 COG1348 NifH Nitrogenase subun 99.9 7.5E-22 1.6E-26 182.7 19.1 233 178-421 1-250 (278)
47 PF00142 Fer4_NifH: 4Fe-4S iro 99.9 7.6E-22 1.6E-26 188.8 16.4 241 179-433 1-258 (273)
48 PF01656 CbiA: CobQ/CobB/MinD/ 99.9 4.5E-22 9.8E-27 188.1 10.6 190 181-389 1-195 (195)
49 TIGR01005 eps_transp_fam exopo 99.9 2.3E-21 5E-26 219.7 14.8 172 176-353 544-722 (754)
50 PRK11519 tyrosine kinase; Prov 99.8 3.8E-20 8.1E-25 207.6 17.5 168 177-350 525-699 (719)
51 PRK09841 cryptic autophosphory 99.8 4.1E-20 8.9E-25 207.5 17.5 169 177-351 530-705 (726)
52 cd00550 ArsA_ATPase Oxyanion-t 99.8 6.9E-21 1.5E-25 187.7 9.1 203 181-385 2-240 (254)
53 COG3536 Uncharacterized protei 99.8 1.1E-20 2.3E-25 152.5 7.7 93 427-522 3-96 (120)
54 cd03111 CpaE_like This protein 99.8 1.2E-19 2.7E-24 154.5 12.9 102 180-348 1-106 (106)
55 COG4963 CpaE Flp pilus assembl 99.8 1.1E-18 2.4E-23 174.7 19.4 231 174-420 100-344 (366)
56 cd02038 FleN-like FleN is a me 99.8 3E-19 6.4E-24 159.9 13.5 108 180-351 1-109 (139)
57 cd02035 ArsA ArsA ATPase funct 99.8 4.8E-19 1E-23 170.7 10.6 163 181-352 1-183 (217)
58 PF07015 VirC1: VirC1 protein; 99.8 4.2E-18 9E-23 161.3 14.9 183 178-396 1-191 (231)
59 PF09140 MipZ: ATPase MipZ; I 99.8 1.8E-19 3.9E-24 170.9 2.7 209 179-401 1-232 (261)
60 cd02042 ParA ParA and ParB of 99.8 9.6E-18 2.1E-22 142.3 12.7 99 180-347 1-104 (104)
61 COG2151 PaaD Predicted metal-s 99.7 4.3E-18 9.4E-23 142.6 8.9 88 76-163 8-95 (111)
62 PF02374 ArsA_ATPase: Anion-tr 99.7 1.1E-17 2.4E-22 168.6 12.9 197 178-384 1-286 (305)
63 PF13614 AAA_31: AAA domain; P 99.7 4.3E-17 9.3E-22 148.8 7.3 141 179-325 1-156 (157)
64 COG0003 ArsA Predicted ATPase 99.7 1.5E-15 3.2E-20 152.7 14.8 205 178-384 2-285 (322)
65 TIGR02409 carnitine_bodg gamma 99.6 5.3E-16 1.1E-20 161.1 7.0 79 441-520 2-81 (366)
66 COG0541 Ffh Signal recognition 99.6 2.5E-15 5.3E-20 152.5 8.9 243 78-379 20-271 (451)
67 PRK10867 signal recognition pa 99.6 6.2E-15 1.3E-19 154.2 10.4 243 79-380 21-273 (433)
68 TIGR00959 ffh signal recogniti 99.5 2E-14 4.4E-19 150.3 9.9 243 79-380 20-272 (428)
69 TIGR01425 SRP54_euk signal rec 99.5 5.3E-14 1.2E-18 146.3 10.5 243 78-379 20-271 (429)
70 TIGR00064 ftsY signal recognit 99.5 5.2E-13 1.1E-17 132.6 16.2 168 177-380 71-250 (272)
71 PF01883 DUF59: Domain of unkn 99.5 1.5E-13 3.2E-18 108.4 8.5 72 82-155 1-72 (72)
72 TIGR02410 carnitine_TMLD trime 99.5 2.7E-14 5.9E-19 147.9 5.1 66 454-520 2-70 (362)
73 PF10609 ParA: ParA/MinD ATPas 99.5 2.4E-13 5.3E-18 107.3 7.9 77 287-363 2-80 (81)
74 cd03114 ArgK-like The function 99.4 2.2E-12 4.8E-17 116.5 15.2 145 181-349 2-147 (148)
75 KOG2825 Putative arsenite-tran 99.4 2.4E-13 5.1E-18 127.8 8.8 210 174-385 14-305 (323)
76 TIGR03406 FeS_long_SufT probab 99.4 7.5E-13 1.6E-17 121.2 11.4 86 78-163 71-159 (174)
77 PRK00771 signal recognition pa 99.4 3.9E-13 8.5E-18 141.1 10.9 240 79-380 17-265 (437)
78 cd03115 SRP The signal recogni 99.4 1.4E-11 3.1E-16 114.3 15.9 164 180-379 2-171 (173)
79 PRK10416 signal recognition pa 99.3 6E-11 1.3E-15 120.3 18.1 167 178-380 114-292 (318)
80 cd02034 CooC The accessory pro 99.3 8.2E-12 1.8E-16 107.8 9.2 111 181-316 2-115 (116)
81 PRK13886 conjugal transfer pro 99.3 5.2E-11 1.1E-15 114.9 14.2 48 177-224 1-48 (241)
82 cd01983 Fer4_NifH The Fer4_Nif 99.3 4.1E-11 8.8E-16 99.3 11.6 94 181-347 2-99 (99)
83 TIGR00347 bioD dethiobiotin sy 99.2 1.5E-10 3.2E-15 106.8 12.8 152 183-347 2-166 (166)
84 PRK11889 flhF flagellar biosyn 99.2 3.4E-10 7.3E-15 115.5 15.6 164 178-380 241-410 (436)
85 PRK00090 bioD dithiobiotin syn 99.2 1.2E-10 2.5E-15 112.8 11.4 193 181-383 2-201 (222)
86 KOG3889 Predicted gamma-butyro 99.2 1.3E-11 2.8E-16 116.8 4.3 70 450-520 16-85 (371)
87 KOG3888 Gamma-butyrobetaine,2- 99.2 1.1E-11 2.4E-16 121.6 4.0 83 437-520 24-107 (407)
88 PRK13768 GTPase; Provisional 99.2 2.2E-10 4.7E-15 112.9 12.1 45 177-222 1-45 (253)
89 TIGR02945 SUF_assoc FeS assemb 99.2 2.4E-10 5.1E-15 96.0 10.2 81 82-163 3-83 (99)
90 PRK12726 flagellar biosynthesi 99.1 1.9E-09 4.2E-14 109.7 15.2 165 177-380 205-375 (407)
91 TIGR00345 arsA arsenite-activa 99.1 3.1E-10 6.6E-15 113.8 8.1 182 195-384 1-267 (284)
92 PRK14974 cell division protein 99.1 3.8E-09 8.2E-14 107.5 15.7 245 80-379 58-311 (336)
93 PRK12724 flagellar biosynthesi 99.0 2.6E-09 5.5E-14 110.5 14.3 160 178-380 223-392 (432)
94 TIGR02159 PA_CoA_Oxy4 phenylac 99.0 7.5E-10 1.6E-14 98.7 8.6 69 92-163 1-70 (146)
95 PRK01077 cobyrinic acid a,c-di 99.0 8.2E-09 1.8E-13 110.2 16.6 202 178-420 3-216 (451)
96 PRK05703 flhF flagellar biosyn 99.0 2.2E-09 4.8E-14 113.1 11.5 160 178-379 221-389 (424)
97 cd03109 DTBS Dethiobiotin synt 99.0 1.4E-08 3E-13 90.2 14.9 125 183-382 4-134 (134)
98 PF00448 SRP54: SRP54-type pro 99.0 9.6E-09 2.1E-13 97.2 13.7 165 179-379 2-172 (196)
99 PRK12727 flagellar biosynthesi 99.0 7.6E-09 1.6E-13 109.6 14.1 160 177-379 349-516 (559)
100 TIGR00750 lao LAO/AO transport 98.9 5.8E-08 1.2E-12 98.3 15.6 153 176-352 32-185 (300)
101 PRK12374 putative dithiobiotin 98.8 1.1E-07 2.4E-12 92.6 16.1 192 177-386 1-205 (231)
102 COG0552 FtsY Signal recognitio 98.8 9.7E-09 2.1E-13 102.0 8.4 169 176-380 137-317 (340)
103 PRK12723 flagellar biosynthesi 98.8 7E-08 1.5E-12 100.1 15.0 160 178-379 174-344 (388)
104 KOG0780 Signal recognition par 98.8 6.5E-09 1.4E-13 103.9 6.7 224 81-355 24-256 (483)
105 PRK13505 formate--tetrahydrofo 98.8 1.8E-07 3.9E-12 98.9 16.8 89 323-418 357-457 (557)
106 PRK14493 putative bifunctional 98.8 6.2E-08 1.3E-12 96.2 12.7 136 178-337 1-137 (274)
107 PF13500 AAA_26: AAA domain; P 98.8 3.8E-08 8.3E-13 93.5 10.8 188 179-388 1-196 (199)
108 PRK05632 phosphate acetyltrans 98.8 2E-07 4.3E-12 104.5 16.9 178 177-388 1-200 (684)
109 TIGR00313 cobQ cobyric acid sy 98.7 1.8E-07 4E-12 100.3 15.1 197 181-385 1-225 (475)
110 PRK14723 flhF flagellar biosyn 98.7 1.3E-07 2.8E-12 104.8 12.9 163 178-380 185-356 (767)
111 COG0132 BioD Dethiobiotin synt 98.7 6.9E-07 1.5E-11 85.3 15.1 199 177-387 1-207 (223)
112 PRK06731 flhF flagellar biosyn 98.7 2.8E-07 6.1E-12 91.1 12.7 164 178-380 75-244 (270)
113 COG1703 ArgK Putative periplas 98.6 7.1E-07 1.5E-11 87.3 14.8 152 173-350 46-200 (323)
114 PRK09435 membrane ATPase/prote 98.6 5.6E-07 1.2E-11 91.5 14.7 152 176-352 54-207 (332)
115 PRK00784 cobyric acid synthase 98.6 6.6E-07 1.4E-11 96.6 15.4 200 177-386 1-229 (488)
116 PRK14722 flhF flagellar biosyn 98.6 7.3E-07 1.6E-11 91.9 14.7 163 178-380 137-314 (374)
117 TIGR03499 FlhF flagellar biosy 98.5 1.4E-07 3.1E-12 94.4 6.2 42 178-220 194-237 (282)
118 PRK06995 flhF flagellar biosyn 98.5 9.8E-07 2.1E-11 93.7 12.4 160 178-379 256-423 (484)
119 TIGR00379 cobB cobyrinic acid 98.5 2.2E-06 4.9E-11 91.5 15.3 198 181-419 2-212 (449)
120 PF03308 ArgK: ArgK protein; 98.4 1E-06 2.2E-11 85.2 9.2 149 176-350 27-178 (266)
121 COG1797 CobB Cobyrinic acid a, 98.4 9.3E-06 2E-10 83.5 14.8 168 180-388 2-183 (451)
122 KOG0781 Signal recognition par 98.2 5.4E-06 1.2E-10 85.4 8.9 155 176-350 376-541 (587)
123 COG1419 FlhF Flagellar GTP-bin 98.1 3.9E-05 8.4E-10 78.8 12.9 160 178-379 203-370 (407)
124 PRK06278 cobyrinic acid a,c-di 98.0 0.00012 2.6E-09 78.1 14.3 169 174-382 234-418 (476)
125 PRK13896 cobyrinic acid a,c-di 98.0 6.8E-05 1.5E-09 79.1 12.1 169 178-387 1-178 (433)
126 cd04170 EF-G_bact Elongation f 97.8 0.00017 3.6E-09 71.9 10.7 97 282-385 60-157 (268)
127 PRK14721 flhF flagellar biosyn 97.8 0.0006 1.3E-08 71.6 15.1 160 177-379 190-358 (420)
128 cd04168 TetM_like Tet(M)-like 97.6 0.00074 1.6E-08 65.9 12.9 93 283-382 61-154 (237)
129 cd01886 EF-G Elongation factor 97.6 0.0036 7.9E-08 62.3 17.0 96 283-385 61-157 (270)
130 cd00477 FTHFS Formyltetrahydro 97.5 0.00017 3.6E-09 75.9 6.6 51 177-230 37-90 (524)
131 cd04169 RF3 RF3 subfamily. Pe 97.4 0.0016 3.4E-08 64.8 12.3 95 283-384 68-163 (267)
132 COG1341 Predicted GTPase or GT 97.4 0.00097 2.1E-08 68.4 10.4 43 179-222 74-116 (398)
133 COG1763 MobB Molybdopterin-gua 97.4 0.0012 2.7E-08 60.0 10.1 42 177-219 1-42 (161)
134 COG0529 CysC Adenylylsulfate k 97.4 0.00024 5.3E-09 64.6 5.1 52 176-228 21-72 (197)
135 PRK13506 formate--tetrahydrofo 97.4 0.00029 6.4E-09 74.8 6.5 51 177-230 53-106 (578)
136 PRK14494 putative molybdopteri 97.4 0.00075 1.6E-08 65.1 8.8 38 178-216 1-38 (229)
137 TIGR00176 mobB molybdopterin-g 97.3 0.00076 1.6E-08 61.3 7.9 38 180-218 1-38 (155)
138 KOG1532 GTPase XAB1, interacts 97.3 0.0016 3.5E-08 63.1 10.1 161 178-353 19-195 (366)
139 cd04167 Snu114p Snu114p subfam 97.2 0.0019 4.2E-08 61.9 9.6 67 284-351 69-135 (213)
140 PRK14495 putative molybdopteri 97.2 0.0011 2.4E-08 69.2 8.1 39 178-217 1-39 (452)
141 cd01884 EF_Tu EF-Tu subfamily. 97.1 0.003 6.5E-08 59.8 9.8 68 284-351 63-130 (195)
142 TIGR02237 recomb_radB DNA repa 97.1 0.0011 2.4E-08 63.2 6.9 39 178-217 12-50 (209)
143 PF03029 ATP_bind_1: Conserved 97.1 0.00012 2.6E-09 71.5 -0.3 38 186-223 3-40 (238)
144 PF03205 MobB: Molybdopterin g 97.0 0.0017 3.6E-08 58.0 6.7 42 179-221 1-43 (140)
145 PRK04296 thymidine kinase; Pro 97.0 0.013 2.9E-07 55.1 12.8 35 178-213 2-36 (190)
146 COG1492 CobQ Cobyric acid synt 97.0 0.0026 5.7E-08 67.0 8.5 198 179-386 2-229 (486)
147 COG0857 Pta BioD-like N-termin 96.9 0.0083 1.8E-07 61.6 11.5 192 177-387 1-206 (354)
148 PRK12740 elongation factor G; 96.9 0.0058 1.3E-07 69.0 11.3 94 283-383 57-151 (668)
149 cd00881 GTP_translation_factor 96.9 0.0057 1.2E-07 56.6 9.2 68 284-352 60-127 (189)
150 cd01120 RecA-like_NTPases RecA 96.8 0.0029 6.4E-08 56.9 6.8 38 183-220 3-40 (165)
151 PRK00889 adenylylsulfate kinas 96.8 0.0021 4.5E-08 59.6 5.8 41 178-219 4-44 (175)
152 cd04166 CysN_ATPS CysN_ATPS su 96.8 0.0087 1.9E-07 57.1 10.3 70 283-352 74-143 (208)
153 PF00009 GTP_EFTU: Elongation 96.8 0.0066 1.4E-07 56.9 9.0 68 283-351 67-134 (188)
154 cd04163 Era Era subfamily. Er 96.8 0.015 3.3E-07 52.1 11.1 67 284-351 49-123 (168)
155 PF01583 APS_kinase: Adenylyls 96.8 0.0023 4.9E-08 58.0 5.4 43 179-222 3-45 (156)
156 PRK00741 prfC peptide chain re 96.7 0.017 3.7E-07 63.0 12.8 94 283-383 76-170 (526)
157 cd00561 CobA_CobO_BtuR ATP:cor 96.7 0.0084 1.8E-07 54.5 8.8 35 180-215 4-38 (159)
158 TIGR00490 aEF-2 translation el 96.7 0.0047 1E-07 70.1 8.5 68 283-351 83-150 (720)
159 KOG1533 Predicted GTPase [Gene 96.7 0.0023 5E-08 60.8 4.8 39 186-224 9-47 (290)
160 PRK10751 molybdopterin-guanine 96.7 0.0082 1.8E-07 55.4 8.3 42 177-219 5-46 (173)
161 cd01394 radB RadB. The archaea 96.7 0.0032 7E-08 60.5 6.0 39 179-218 20-58 (218)
162 PRK07667 uridine kinase; Provi 96.6 0.0039 8.5E-08 58.8 6.2 39 179-218 18-56 (193)
163 PRK08233 hypothetical protein; 96.6 0.0064 1.4E-07 56.4 7.4 38 178-218 3-40 (182)
164 TIGR00708 cobA cob(I)alamin ad 96.6 0.013 2.9E-07 53.9 9.1 35 180-216 8-42 (173)
165 TIGR02012 tigrfam_recA protein 96.5 0.0043 9.4E-08 63.0 5.9 39 178-217 55-93 (321)
166 TIGR01618 phage_P_loop phage n 96.5 0.0088 1.9E-07 57.5 7.7 36 175-218 9-44 (220)
167 cd03116 MobB Molybdenum is an 96.5 0.006 1.3E-07 55.7 6.2 41 178-219 1-41 (159)
168 PRK00089 era GTPase Era; Revie 96.5 0.03 6.6E-07 56.3 11.9 68 284-352 51-126 (292)
169 TIGR00503 prfC peptide chain r 96.5 0.021 4.6E-07 62.3 11.4 94 283-383 77-171 (527)
170 PLN02974 adenosylmethionine-8- 96.4 0.22 4.8E-06 57.1 19.6 64 284-348 183-252 (817)
171 PRK00007 elongation factor G; 96.4 0.027 6E-07 63.7 12.3 94 283-383 72-166 (693)
172 cd04165 GTPBP1_like GTPBP1-lik 96.4 0.045 9.8E-07 52.9 12.2 67 284-351 82-150 (224)
173 PRK00093 GTP-binding protein D 96.4 0.033 7.1E-07 59.5 12.1 67 284-351 47-121 (435)
174 PRK09361 radB DNA repair and r 96.4 0.0067 1.5E-07 58.6 6.2 38 178-216 23-60 (225)
175 cd01125 repA Hexameric Replica 96.4 0.0051 1.1E-07 60.1 5.3 39 181-219 3-53 (239)
176 PRK03846 adenylylsulfate kinas 96.3 0.0062 1.3E-07 57.7 5.7 43 176-219 22-64 (198)
177 PRK00049 elongation factor Tu; 96.3 0.026 5.7E-07 59.5 10.9 68 284-351 73-140 (396)
178 PRK12739 elongation factor G; 96.3 0.041 8.8E-07 62.3 13.0 94 283-383 70-164 (691)
179 cd01894 EngA1 EngA1 subfamily. 96.3 0.033 7.2E-07 49.6 10.1 67 284-351 43-117 (157)
180 cd01887 IF2_eIF5B IF2/eIF5B (i 96.3 0.044 9.4E-07 49.7 10.8 67 284-351 48-114 (168)
181 PRK06067 flagellar accessory p 96.2 0.013 2.8E-07 57.0 7.3 38 179-217 26-63 (234)
182 PRK06696 uridine kinase; Valid 96.2 0.0085 1.8E-07 57.9 5.9 40 179-219 23-62 (223)
183 PRK05973 replicative DNA helic 96.2 0.0072 1.5E-07 58.8 5.2 39 180-218 65-103 (237)
184 PRK07952 DNA replication prote 96.2 0.0067 1.5E-07 59.3 5.0 34 182-215 102-135 (244)
185 cd01393 recA_like RecA is a b 96.2 0.013 2.7E-07 56.6 7.0 39 178-217 19-63 (226)
186 PF13479 AAA_24: AAA domain 96.2 0.019 4E-07 55.1 8.0 30 180-218 5-34 (213)
187 cd00983 recA RecA is a bacter 96.2 0.0092 2E-07 60.7 6.0 39 178-217 55-93 (325)
188 cd03113 CTGs CTP synthetase (C 96.1 0.1 2.2E-06 50.4 12.7 174 187-383 10-237 (255)
189 PRK10218 GTP-binding protein; 96.1 0.073 1.6E-06 59.0 13.4 69 283-352 65-133 (607)
190 COG3367 Uncharacterized conser 96.1 0.097 2.1E-06 52.3 12.7 168 178-384 148-327 (339)
191 smart00382 AAA ATPases associa 96.1 0.011 2.3E-07 51.2 5.7 40 179-219 3-42 (148)
192 TIGR01394 TypA_BipA GTP-bindin 96.1 0.033 7.1E-07 61.7 10.4 68 283-351 61-128 (594)
193 cd01124 KaiC KaiC is a circadi 96.1 0.0083 1.8E-07 55.9 5.0 38 182-219 2-39 (187)
194 cd02028 UMPK_like Uridine mono 96.1 0.0083 1.8E-07 55.9 4.9 38 181-219 2-39 (179)
195 cd03112 CobW_like The function 96.1 0.1 2.3E-06 47.4 12.1 33 183-217 4-36 (158)
196 COG1066 Sms Predicted ATP-depe 96.1 0.0072 1.6E-07 62.1 4.7 37 180-217 94-130 (456)
197 COG1618 Predicted nucleotide k 96.1 0.011 2.4E-07 53.2 5.3 39 176-215 3-41 (179)
198 PRK14489 putative bifunctional 96.0 0.021 4.6E-07 59.5 8.2 43 176-219 203-245 (366)
199 PRK00652 lpxK tetraacyldisacch 96.0 0.028 6E-07 57.4 8.8 41 179-219 50-91 (325)
200 TIGR00484 EF-G translation elo 96.0 0.19 4.1E-06 57.0 16.4 95 283-384 72-167 (689)
201 PRK14491 putative bifunctional 96.0 0.025 5.3E-07 62.7 8.9 42 177-219 9-50 (597)
202 cd04171 SelB SelB subfamily. 96.0 0.031 6.7E-07 50.3 8.2 67 285-351 50-116 (164)
203 PRK05986 cob(I)alamin adenolsy 96.0 0.038 8.3E-07 51.7 8.7 36 180-216 24-59 (191)
204 PLN03127 Elongation factor Tu; 95.9 0.084 1.8E-06 56.5 12.4 68 284-351 122-189 (447)
205 PRK13351 elongation factor G; 95.9 0.044 9.6E-07 62.1 10.9 94 283-383 70-164 (687)
206 PHA02542 41 41 helicase; Provi 95.9 0.0099 2.1E-07 63.9 5.3 41 180-220 191-231 (473)
207 PRK06762 hypothetical protein; 95.9 0.01 2.2E-07 54.4 4.7 39 177-219 1-39 (166)
208 cd01891 TypA_BipA TypA (tyrosi 95.9 0.1 2.3E-06 48.9 11.7 67 284-351 63-129 (194)
209 cd01123 Rad51_DMC1_radA Rad51_ 95.9 0.014 3E-07 56.7 5.8 40 178-218 19-64 (235)
210 PRK15453 phosphoribulokinase; 95.9 0.015 3.3E-07 57.6 5.9 42 178-220 5-46 (290)
211 KOG1534 Putative transcription 95.8 0.019 4.1E-07 53.8 6.0 46 177-222 1-46 (273)
212 TIGR00682 lpxK tetraacyldisacc 95.8 0.036 7.8E-07 56.2 8.6 41 179-219 29-70 (311)
213 COG0050 TufB GTPases - transla 95.8 0.03 6.5E-07 55.0 7.5 70 284-353 73-142 (394)
214 PF07755 DUF1611: Protein of u 95.8 0.06 1.3E-06 54.0 9.8 164 177-380 111-292 (301)
215 cd02027 APSK Adenosine 5'-phos 95.8 0.012 2.6E-07 53.0 4.5 36 184-219 4-39 (149)
216 PF13207 AAA_17: AAA domain; P 95.8 0.011 2.5E-07 50.7 4.2 32 180-215 1-32 (121)
217 cd01885 EF2 EF2 (for archaea a 95.7 0.068 1.5E-06 51.6 9.8 66 284-350 71-136 (222)
218 cd01121 Sms Sms (bacterial rad 95.7 0.012 2.6E-07 61.3 4.8 37 181-217 84-120 (372)
219 TIGR02034 CysN sulfate adenyly 95.7 0.036 7.9E-07 58.6 8.4 69 283-351 77-145 (406)
220 cd02029 PRK_like Phosphoribulo 95.7 0.016 3.5E-07 56.9 5.3 40 180-220 1-40 (277)
221 PRK05480 uridine/cytidine kina 95.7 0.022 4.8E-07 54.3 6.0 40 177-219 5-44 (209)
222 TIGR02655 circ_KaiC circadian 95.6 0.023 4.9E-07 61.6 6.7 39 180-218 264-302 (484)
223 cd04127 Rab27A Rab27a subfamil 95.6 0.42 9.1E-06 43.9 14.4 86 285-375 62-152 (180)
224 PF13481 AAA_25: AAA domain; P 95.6 0.016 3.5E-07 54.3 4.8 39 181-219 34-82 (193)
225 cd01883 EF1_alpha Eukaryotic e 95.6 0.024 5.1E-07 54.6 5.8 70 283-352 74-150 (219)
226 PHA00729 NTP-binding motif con 95.5 0.022 4.7E-07 54.8 5.4 24 180-204 19-42 (226)
227 PRK09354 recA recombinase A; P 95.5 0.026 5.6E-07 57.9 6.2 38 179-217 61-98 (349)
228 cd01889 SelB_euk SelB subfamil 95.5 0.058 1.3E-06 50.6 8.3 67 284-351 66-132 (192)
229 PF13245 AAA_19: Part of AAA d 95.5 0.026 5.7E-07 44.6 4.9 36 181-216 12-51 (76)
230 TIGR03878 thermo_KaiC_2 KaiC d 95.5 0.022 4.9E-07 56.3 5.4 38 180-217 37-74 (259)
231 COG3598 RepA RecA-family ATPas 95.4 0.015 3.2E-07 58.0 4.0 43 180-222 90-142 (402)
232 PRK07414 cob(I)yrinic acid a,c 95.4 0.14 3E-06 47.4 10.1 42 173-216 17-58 (178)
233 PTZ00141 elongation factor 1- 95.4 0.038 8.3E-07 59.1 7.4 68 283-350 82-156 (446)
234 cd01122 GP4d_helicase GP4d_hel 95.4 0.021 4.6E-07 56.7 5.2 37 181-217 32-69 (271)
235 TIGR00436 era GTP-binding prot 95.4 0.19 4.1E-06 50.0 12.0 66 284-351 46-119 (270)
236 TIGR00455 apsK adenylylsulfate 95.4 0.029 6.2E-07 52.4 5.7 43 176-219 16-58 (184)
237 TIGR03574 selen_PSTK L-seryl-t 95.4 0.017 3.8E-07 56.7 4.4 36 183-218 3-38 (249)
238 TIGR00485 EF-Tu translation el 95.4 0.12 2.6E-06 54.5 10.9 68 284-351 73-140 (394)
239 PLN03126 Elongation factor Tu; 95.3 0.1 2.2E-06 56.2 10.4 68 284-351 142-209 (478)
240 PRK12736 elongation factor Tu; 95.3 0.11 2.5E-06 54.6 10.5 68 284-351 73-140 (394)
241 cd00154 Rab Rab family. Rab G 95.3 0.28 6.1E-06 43.3 11.7 68 284-352 47-118 (159)
242 cd00880 Era_like Era (E. coli 95.2 0.12 2.7E-06 45.4 9.1 66 285-351 44-116 (163)
243 PRK05541 adenylylsulfate kinas 95.2 0.035 7.6E-07 51.4 5.6 39 178-217 7-45 (176)
244 TIGR03575 selen_PSTK_euk L-ser 95.2 0.022 4.8E-07 58.4 4.4 39 182-220 2-41 (340)
245 cd04125 RabA_like RabA-like su 95.2 0.87 1.9E-05 42.2 15.1 67 285-351 48-117 (188)
246 cd00984 DnaB_C DnaB helicase C 95.2 0.029 6.4E-07 54.6 5.2 38 181-218 15-53 (242)
247 PRK05439 pantothenate kinase; 95.1 0.041 8.8E-07 55.7 6.2 43 176-219 84-128 (311)
248 cd01890 LepA LepA subfamily. 95.1 0.18 4E-06 46.2 10.1 66 284-351 65-131 (179)
249 CHL00071 tufA elongation facto 95.0 0.19 4.1E-06 53.2 11.2 68 284-351 73-140 (409)
250 cd04160 Arfrp1 Arfrp1 subfamil 95.0 0.36 7.8E-06 43.6 11.7 67 284-351 48-119 (167)
251 COG4088 Predicted nucleotide k 95.0 0.023 4.9E-07 53.2 3.6 40 179-219 2-41 (261)
252 KOG0635 Adenosine 5'-phosphosu 95.0 0.053 1.2E-06 48.1 5.6 51 173-224 26-76 (207)
253 PRK15494 era GTPase Era; Provi 95.0 0.28 6.1E-06 50.6 12.0 66 284-351 98-172 (339)
254 cd01882 BMS1 Bms1. Bms1 is an 94.9 0.26 5.7E-06 47.6 11.1 64 285-351 82-145 (225)
255 cd04122 Rab14 Rab14 subfamily. 94.9 1 2.2E-05 40.7 14.5 68 285-352 50-120 (166)
256 TIGR00073 hypB hydrogenase acc 94.9 0.17 3.7E-06 48.2 9.6 40 177-218 21-60 (207)
257 PF00485 PRK: Phosphoribulokin 94.9 0.033 7.2E-07 52.5 4.6 38 180-218 1-42 (194)
258 cd02019 NK Nucleoside/nucleoti 94.9 0.047 1E-06 42.2 4.7 32 181-215 2-33 (69)
259 cd04110 Rab35 Rab35 subfamily. 94.9 0.51 1.1E-05 44.4 12.7 66 286-352 55-123 (199)
260 PRK12735 elongation factor Tu; 94.8 0.18 3.8E-06 53.2 10.3 68 284-351 73-140 (396)
261 cd04161 Arl2l1_Arl13_like Arl2 94.8 0.6 1.3E-05 42.6 12.7 67 284-351 41-112 (167)
262 smart00173 RAS Ras subfamily o 94.8 0.54 1.2E-05 42.2 12.3 67 285-352 47-118 (164)
263 PRK09302 circadian clock prote 94.8 0.071 1.5E-06 58.2 7.5 41 178-219 31-72 (509)
264 cd04137 RheB Rheb (Ras Homolog 94.8 0.53 1.1E-05 43.2 12.4 67 285-352 48-119 (180)
265 PF03796 DnaB_C: DnaB-like hel 94.8 0.046 9.9E-07 54.1 5.4 40 180-219 20-60 (259)
266 PF01695 IstB_IS21: IstB-like 94.8 0.042 9E-07 51.2 4.8 37 179-216 48-84 (178)
267 COG1484 DnaC DNA replication p 94.8 0.043 9.2E-07 54.2 5.1 37 178-215 105-141 (254)
268 PLN00043 elongation factor 1-a 94.8 0.088 1.9E-06 56.3 7.9 69 283-351 82-157 (447)
269 cd01888 eIF2_gamma eIF2-gamma 94.8 0.24 5.3E-06 46.9 10.1 66 286-351 83-149 (203)
270 PF01926 MMR_HSR1: 50S ribosom 94.7 0.38 8.2E-06 40.9 10.3 63 284-348 45-116 (116)
271 cd01864 Rab19 Rab19 subfamily. 94.7 0.31 6.8E-06 44.0 10.4 67 285-352 51-121 (165)
272 PRK08533 flagellar accessory p 94.7 0.057 1.2E-06 52.5 5.7 39 179-218 25-63 (230)
273 PRK01906 tetraacyldisaccharide 94.6 0.15 3.3E-06 52.3 8.9 41 179-219 57-98 (338)
274 COG4108 PrfC Peptide chain rel 94.6 0.18 3.9E-06 52.4 9.2 86 284-376 79-164 (528)
275 COG0467 RAD55 RecA-superfamily 94.6 0.06 1.3E-06 53.3 5.7 42 178-220 23-64 (260)
276 PTZ00416 elongation factor 2; 94.6 0.12 2.6E-06 59.8 8.9 68 284-352 90-157 (836)
277 cd04112 Rab26 Rab26 subfamily. 94.6 0.43 9.4E-06 44.5 11.3 66 285-351 49-118 (191)
278 COG1160 Predicted GTPases [Gen 94.6 0.46 1E-05 49.9 12.3 69 283-352 48-125 (444)
279 cd04139 RalA_RalB RalA/RalB su 94.6 0.59 1.3E-05 41.8 11.9 67 284-351 46-117 (164)
280 COG2874 FlaH Predicted ATPases 94.5 0.16 3.6E-06 48.0 8.0 102 179-293 29-131 (235)
281 cd02025 PanK Pantothenate kina 94.5 0.051 1.1E-06 52.4 4.9 39 180-219 1-41 (220)
282 TIGR03881 KaiC_arch_4 KaiC dom 94.5 0.071 1.5E-06 51.5 5.9 40 178-218 20-59 (229)
283 PRK06526 transposase; Provisio 94.5 0.028 6.1E-07 55.4 3.0 35 180-215 100-134 (254)
284 COG1159 Era GTPase [General fu 94.4 0.39 8.5E-06 47.7 10.8 111 180-351 8-126 (298)
285 cd04106 Rab23_lke Rab23-like s 94.4 0.57 1.2E-05 42.0 11.4 87 284-375 49-138 (162)
286 cd04141 Rit_Rin_Ric Rit/Rin/Ri 94.4 1.2 2.6E-05 40.8 13.8 67 285-352 49-120 (172)
287 cd04101 RabL4 RabL4 (Rab-like4 94.4 0.49 1.1E-05 42.5 11.0 67 284-351 50-119 (164)
288 TIGR02238 recomb_DMC1 meiotic 94.4 0.088 1.9E-06 53.6 6.5 39 179-218 97-141 (313)
289 smart00175 RAB Rab subfamily o 94.4 0.7 1.5E-05 41.3 11.9 67 285-352 48-118 (164)
290 TIGR03600 phage_DnaB phage rep 94.4 0.057 1.2E-06 57.4 5.3 38 181-218 196-234 (421)
291 PF08433 KTI12: Chromatin asso 94.3 0.056 1.2E-06 53.8 4.7 38 179-217 2-39 (270)
292 cd04124 RabL2 RabL2 subfamily. 94.3 0.37 8.1E-06 43.5 9.8 67 284-351 47-116 (161)
293 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 94.2 0.92 2E-05 40.9 12.3 66 285-351 50-119 (166)
294 PRK06217 hypothetical protein; 94.2 0.065 1.4E-06 50.0 4.6 33 179-217 2-34 (183)
295 PRK05306 infB translation init 94.1 0.41 8.9E-06 54.6 11.7 67 284-351 335-401 (787)
296 TIGR03880 KaiC_arch_3 KaiC dom 94.1 0.094 2E-06 50.5 5.8 39 178-217 16-54 (224)
297 cd02023 UMPK Uridine monophosp 94.1 0.067 1.5E-06 50.5 4.7 37 180-219 1-37 (198)
298 TIGR03594 GTPase_EngA ribosome 94.1 0.31 6.8E-06 51.8 10.3 68 284-352 45-120 (429)
299 PRK09183 transposase/IS protei 94.1 0.077 1.7E-06 52.5 5.2 36 179-215 103-138 (259)
300 PRK05433 GTP-binding protein L 94.1 0.31 6.7E-06 54.2 10.4 67 284-351 72-138 (600)
301 TIGR00041 DTMP_kinase thymidyl 94.1 0.092 2E-06 49.3 5.5 37 178-215 3-39 (195)
302 PRK05595 replicative DNA helic 94.0 0.072 1.6E-06 57.1 5.3 39 180-218 202-241 (444)
303 PF02606 LpxK: Tetraacyldisacc 94.0 0.2 4.3E-06 51.3 8.2 41 179-219 36-77 (326)
304 cd01860 Rab5_related Rab5-rela 94.0 0.99 2.1E-05 40.4 12.1 67 285-351 49-118 (163)
305 cd01867 Rab8_Rab10_Rab13_like 94.0 0.76 1.7E-05 41.6 11.4 67 285-352 51-121 (167)
306 cd01866 Rab2 Rab2 subfamily. 94.0 0.59 1.3E-05 42.5 10.6 66 286-352 53-122 (168)
307 cd01672 TMPK Thymidine monopho 93.9 0.088 1.9E-06 49.2 5.1 35 180-215 2-36 (200)
308 PRK03003 GTP-binding protein D 93.9 0.39 8.4E-06 51.9 10.7 67 284-351 84-158 (472)
309 cd00878 Arf_Arl Arf (ADP-ribos 93.9 0.78 1.7E-05 41.0 11.1 66 285-351 42-112 (158)
310 cd04109 Rab28 Rab28 subfamily. 93.9 0.79 1.7E-05 43.7 11.7 87 285-375 49-141 (215)
311 cd01868 Rab11_like Rab11-like. 93.9 0.58 1.3E-05 42.1 10.3 67 285-351 51-120 (165)
312 PRK12377 putative replication 93.8 0.092 2E-06 51.5 5.1 36 180-216 103-138 (248)
313 PRK10512 selenocysteinyl-tRNA- 93.8 0.21 4.6E-06 55.6 8.5 65 287-351 52-116 (614)
314 PLN02924 thymidylate kinase 93.8 0.11 2.4E-06 50.0 5.6 41 173-214 11-51 (220)
315 PRK12317 elongation factor 1-a 93.8 0.41 8.9E-06 51.0 10.4 70 283-352 81-152 (425)
316 PRK08506 replicative DNA helic 93.7 0.089 1.9E-06 56.7 5.3 40 180-219 193-232 (472)
317 COG0468 RecA RecA/RadA recombi 93.7 0.15 3.2E-06 50.8 6.4 39 178-217 60-98 (279)
318 TIGR03877 thermo_KaiC_1 KaiC d 93.7 0.12 2.6E-06 50.3 5.8 39 179-218 22-60 (237)
319 cd04136 Rap_like Rap-like subf 93.7 1.1 2.3E-05 40.1 11.7 66 285-351 48-118 (163)
320 PF02492 cobW: CobW/HypB/UreG, 93.7 0.09 2E-06 48.8 4.6 141 182-351 3-153 (178)
321 PRK00093 GTP-binding protein D 93.7 1.3 2.9E-05 47.1 14.2 67 284-351 219-296 (435)
322 COG4240 Predicted kinase [Gene 93.6 0.098 2.1E-06 49.8 4.7 38 180-217 51-89 (300)
323 PTZ00035 Rad51 protein; Provis 93.6 0.16 3.4E-06 52.3 6.6 39 178-217 118-162 (337)
324 PTZ00133 ADP-ribosylation fact 93.6 4.3 9.4E-05 37.5 15.9 67 284-351 59-130 (182)
325 TIGR03420 DnaA_homol_Hda DnaA 93.6 0.11 2.4E-06 49.9 5.2 39 179-218 39-77 (226)
326 cd04175 Rap1 Rap1 subgroup. T 93.6 1.3 2.9E-05 39.7 12.2 67 285-352 48-119 (164)
327 cd04120 Rab12 Rab12 subfamily. 93.6 2.5 5.4E-05 40.1 14.3 67 285-352 48-118 (202)
328 COG1663 LpxK Tetraacyldisaccha 93.5 0.27 5.8E-06 49.8 7.9 41 179-219 48-89 (336)
329 COG2403 Predicted GTPase [Gene 93.5 0.1 2.3E-06 53.0 4.9 38 178-215 126-163 (449)
330 cd01861 Rab6 Rab6 subfamily. 93.5 1.3 2.8E-05 39.5 11.9 66 286-351 49-117 (161)
331 cd04111 Rab39 Rab39 subfamily. 93.5 3.7 8.1E-05 39.0 15.5 68 285-352 51-122 (211)
332 cd04108 Rab36_Rab34 Rab34/Rab3 93.5 0.72 1.6E-05 42.2 10.3 67 285-351 48-118 (170)
333 cd04118 Rab24 Rab24 subfamily. 93.5 0.98 2.1E-05 42.0 11.4 65 286-351 50-117 (193)
334 TIGR00475 selB selenocysteine- 93.4 0.19 4.1E-06 55.7 7.3 67 285-351 49-115 (581)
335 PRK08760 replicative DNA helic 93.4 0.096 2.1E-06 56.5 4.9 40 180-219 230-270 (476)
336 PRK06749 replicative DNA helic 93.4 0.1 2.2E-06 55.5 5.0 39 181-219 188-226 (428)
337 cd00009 AAA The AAA+ (ATPases 93.4 0.13 2.8E-06 44.7 5.0 40 179-219 20-59 (151)
338 PRK06835 DNA replication prote 93.4 0.1 2.3E-06 53.4 4.8 38 179-217 184-221 (329)
339 PF00154 RecA: recA bacterial 93.4 0.18 4E-06 51.2 6.5 40 178-218 53-92 (322)
340 cd04113 Rab4 Rab4 subfamily. 93.3 1.3 2.8E-05 39.7 11.6 67 284-351 47-117 (161)
341 PRK09270 nucleoside triphospha 93.3 0.14 3.1E-06 49.5 5.5 40 178-218 33-73 (229)
342 cd04126 Rab20 Rab20 subfamily. 93.3 6.3 0.00014 37.9 16.8 69 284-352 42-113 (220)
343 PF13173 AAA_14: AAA domain 93.3 0.12 2.6E-06 45.1 4.5 39 179-219 3-41 (128)
344 cd01898 Obg Obg subfamily. Th 93.3 1.3 2.8E-05 40.0 11.6 66 286-352 48-127 (170)
345 PRK09519 recA DNA recombinatio 93.3 0.18 3.9E-06 57.0 6.9 40 179-219 61-100 (790)
346 TIGR00487 IF-2 translation ini 93.2 0.84 1.8E-05 50.6 12.0 64 287-351 136-199 (587)
347 TIGR00554 panK_bact pantothena 93.2 0.16 3.6E-06 50.9 5.9 41 178-219 62-104 (290)
348 PF06155 DUF971: Protein of un 93.2 0.057 1.2E-06 44.1 2.2 25 496-520 8-32 (89)
349 PRK08118 topology modulation p 93.2 0.086 1.9E-06 48.5 3.6 25 178-203 1-25 (167)
350 TIGR00416 sms DNA repair prote 93.2 0.13 2.8E-06 55.2 5.4 37 181-217 96-132 (454)
351 TIGR02655 circ_KaiC circadian 93.2 0.22 4.8E-06 53.9 7.3 39 178-217 21-60 (484)
352 PF02572 CobA_CobO_BtuR: ATP:c 93.2 0.2 4.4E-06 46.1 5.9 29 188-216 12-40 (172)
353 PRK11823 DNA repair protein Ra 93.1 0.14 3E-06 54.9 5.5 37 181-217 82-118 (446)
354 COG0480 FusA Translation elong 93.1 0.4 8.8E-06 53.8 9.3 95 283-384 72-168 (697)
355 PF06745 KaiC: KaiC; InterPro 93.1 0.12 2.6E-06 49.9 4.6 39 179-218 20-59 (226)
356 PF01935 DUF87: Domain of unkn 93.1 0.14 3.1E-06 49.4 5.1 39 178-217 23-62 (229)
357 PRK00131 aroK shikimate kinase 93.1 0.1 2.2E-06 47.7 3.9 33 179-217 5-37 (175)
358 cd04115 Rab33B_Rab33A Rab33B/R 93.0 1.2 2.5E-05 40.6 10.9 67 284-351 49-121 (170)
359 cd04119 RJL RJL (RabJ-Like) su 93.0 1.8 3.8E-05 38.8 12.1 68 284-351 47-122 (168)
360 PLN03187 meiotic recombination 93.0 0.16 3.4E-06 52.3 5.5 38 180-217 127-170 (344)
361 PLN00116 translation elongatio 93.0 0.32 7E-06 56.4 8.6 67 285-352 97-163 (843)
362 PRK08006 replicative DNA helic 93.0 0.14 3E-06 55.2 5.2 39 180-218 225-264 (471)
363 cd01878 HflX HflX subfamily. 92.9 1.5 3.2E-05 41.3 11.7 66 285-351 88-165 (204)
364 PLN03118 Rab family protein; P 92.9 0.72 1.6E-05 43.8 9.7 66 285-351 61-132 (211)
365 smart00178 SAR Sar1p-like memb 92.9 3.2 6.9E-05 38.4 13.8 82 284-375 59-145 (184)
366 TIGR01393 lepA GTP-binding pro 92.9 0.64 1.4E-05 51.7 10.4 84 285-375 69-152 (595)
367 cd01895 EngA2 EngA2 subfamily. 92.9 1.7 3.6E-05 39.0 11.7 67 284-351 48-125 (174)
368 PRK08939 primosomal protein Dn 92.9 0.15 3.3E-06 51.7 5.1 37 179-216 157-193 (306)
369 PF05729 NACHT: NACHT domain 92.8 0.12 2.5E-06 46.6 3.9 27 180-207 2-28 (166)
370 TIGR00235 udk uridine kinase. 92.8 0.14 3E-06 48.7 4.5 38 178-218 6-43 (207)
371 TIGR00665 DnaB replicative DNA 92.8 0.15 3.3E-06 54.4 5.3 39 181-219 197-236 (434)
372 PRK07560 elongation factor EF- 92.8 0.3 6.6E-06 55.7 8.0 67 284-351 85-151 (731)
373 cd04153 Arl5_Arl8 Arl5/Arl8 su 92.8 3.3 7.1E-05 37.9 13.6 67 284-351 57-128 (174)
374 PRK04328 hypothetical protein; 92.8 0.2 4.3E-06 49.3 5.7 40 178-218 23-62 (249)
375 TIGR03594 GTPase_EngA ribosome 92.7 2.1 4.6E-05 45.4 14.0 67 285-352 219-296 (429)
376 PRK08903 DnaA regulatory inact 92.7 0.18 4E-06 48.6 5.3 37 180-217 44-80 (227)
377 PRK04040 adenylate kinase; Pro 92.7 0.15 3.3E-06 47.9 4.5 32 177-210 1-32 (188)
378 KOG2749 mRNA cleavage and poly 92.7 0.21 4.5E-06 50.6 5.6 45 178-223 103-147 (415)
379 PLN00223 ADP-ribosylation fact 92.6 7 0.00015 36.1 15.7 83 284-375 59-145 (181)
380 PRK09554 feoB ferrous iron tra 92.6 0.68 1.5E-05 53.0 10.4 89 284-380 48-148 (772)
381 PRK08840 replicative DNA helic 92.6 0.17 3.6E-06 54.4 5.2 39 180-218 218-257 (464)
382 PRK06904 replicative DNA helic 92.6 0.16 3.4E-06 54.8 5.0 38 181-218 223-261 (472)
383 cd04102 RabL3 RabL3 (Rab-like3 92.6 6.2 0.00013 37.4 15.4 96 284-380 52-170 (202)
384 PRK05748 replicative DNA helic 92.6 0.16 3.4E-06 54.5 5.0 39 181-219 205-244 (448)
385 PLN03046 D-glycerate 3-kinase; 92.5 0.21 4.4E-06 52.4 5.5 41 178-219 212-252 (460)
386 PRK08727 hypothetical protein; 92.5 0.17 3.7E-06 49.2 4.8 36 180-216 43-78 (233)
387 PRK06547 hypothetical protein; 92.5 0.15 3.2E-06 47.2 4.1 36 177-218 14-49 (172)
388 cd00876 Ras Ras family. The R 92.4 1.5 3.3E-05 38.8 10.7 67 285-352 46-117 (160)
389 PF12846 AAA_10: AAA-like doma 92.4 0.17 3.7E-06 50.5 4.8 33 184-216 6-38 (304)
390 cd04154 Arl2 Arl2 subfamily. 92.4 2.1 4.7E-05 38.9 11.8 67 284-351 56-127 (173)
391 PRK05642 DNA replication initi 92.4 0.18 3.8E-06 49.1 4.7 37 180-217 47-83 (234)
392 cd04148 RGK RGK subfamily. Th 92.3 2.9 6.4E-05 40.1 13.1 65 284-351 48-118 (221)
393 PRK06761 hypothetical protein; 92.3 0.17 3.6E-06 50.6 4.4 39 178-217 3-42 (282)
394 PLN02796 D-glycerate 3-kinase 92.3 0.21 4.5E-06 51.1 5.2 40 178-218 100-139 (347)
395 PLN03110 Rab GTPase; Provision 92.3 4.9 0.00011 38.3 14.6 66 285-351 60-129 (216)
396 cd04155 Arl3 Arl3 subfamily. 92.3 2.3 5E-05 38.5 11.8 82 284-375 56-142 (173)
397 cd01897 NOG NOG1 is a nucleola 92.3 1.6 3.6E-05 39.2 10.8 67 284-351 45-125 (168)
398 PLN03186 DNA repair protein RA 92.2 0.34 7.4E-06 49.9 6.7 39 180-218 124-168 (342)
399 PRK07933 thymidylate kinase; V 92.2 0.31 6.7E-06 46.7 6.0 37 180-217 2-38 (213)
400 PRK03731 aroL shikimate kinase 92.1 0.17 3.7E-06 46.4 4.1 36 177-218 1-36 (171)
401 cd01863 Rab18 Rab18 subfamily. 92.1 3 6.5E-05 37.2 12.2 68 284-352 47-119 (161)
402 cd01865 Rab3 Rab3 subfamily. 92.1 2.5 5.4E-05 38.1 11.8 68 285-352 49-119 (165)
403 PRK06321 replicative DNA helic 92.1 0.21 4.5E-06 53.8 5.2 39 181-219 228-267 (472)
404 cd01862 Rab7 Rab7 subfamily. 92.0 1.7 3.6E-05 39.3 10.6 65 287-352 50-122 (172)
405 COG0237 CoaE Dephospho-CoA kin 92.0 0.2 4.3E-06 47.5 4.4 34 177-217 1-34 (201)
406 PRK10463 hydrogenase nickel in 92.0 0.41 8.9E-06 47.9 6.8 40 178-219 104-143 (290)
407 COG1102 Cmk Cytidylate kinase 92.0 0.13 2.9E-06 46.4 3.0 24 180-204 2-25 (179)
408 cd04121 Rab40 Rab40 subfamily. 92.0 3.7 8.1E-05 38.4 13.0 86 285-375 54-142 (189)
409 CHL00189 infB translation init 91.9 0.65 1.4E-05 52.6 9.0 67 284-351 293-359 (742)
410 PRK08181 transposase; Validate 91.9 0.2 4.3E-06 49.8 4.5 36 179-215 107-142 (269)
411 cd04123 Rab21 Rab21 subfamily. 91.9 2.9 6.3E-05 37.0 11.9 67 285-352 48-118 (162)
412 cd01131 PilT Pilus retraction 91.9 2.6 5.5E-05 39.8 11.8 35 180-215 3-38 (198)
413 PLN03108 Rab family protein; P 91.8 2.4 5.2E-05 40.3 11.8 112 286-422 55-172 (210)
414 PRK07261 topology modulation p 91.8 0.19 4.2E-06 46.3 4.0 23 180-203 2-24 (171)
415 cd04117 Rab15 Rab15 subfamily. 91.7 3.4 7.3E-05 37.2 12.2 66 286-351 49-117 (161)
416 PRK06921 hypothetical protein; 91.7 0.29 6.2E-06 48.7 5.4 37 178-215 117-154 (266)
417 PRK09165 replicative DNA helic 91.7 0.23 4.9E-06 54.0 5.0 39 181-219 219-272 (497)
418 cd04107 Rab32_Rab38 Rab38/Rab3 91.7 6.5 0.00014 36.9 14.5 86 284-374 48-141 (201)
419 TIGR03172 probable selenium-de 91.7 0.21 4.6E-06 48.3 4.3 31 180-213 1-31 (232)
420 COG1936 Predicted nucleotide k 91.7 0.19 4.2E-06 45.9 3.7 27 180-211 2-28 (180)
421 PRK06893 DNA replication initi 91.7 0.24 5.2E-06 48.0 4.7 36 180-216 41-76 (229)
422 cd04114 Rab30 Rab30 subfamily. 91.7 2.7 5.9E-05 37.8 11.5 65 286-351 56-124 (169)
423 cd01892 Miro2 Miro2 subfamily. 91.7 5.3 0.00012 36.3 13.5 85 286-375 54-140 (169)
424 PRK13947 shikimate kinase; Pro 91.6 0.25 5.5E-06 45.2 4.6 33 179-217 2-34 (171)
425 cd02024 NRK1 Nicotinamide ribo 91.6 0.17 3.6E-06 47.5 3.4 35 180-219 1-35 (187)
426 smart00177 ARF ARF-like small 91.6 5.7 0.00012 36.4 13.7 68 284-351 55-126 (175)
427 TIGR02239 recomb_RAD51 DNA rep 91.6 0.47 1E-05 48.4 6.9 40 178-218 96-141 (316)
428 PHA02530 pseT polynucleotide k 91.6 0.18 3.9E-06 50.9 3.8 37 177-218 1-37 (300)
429 PF13671 AAA_33: AAA domain; P 91.5 0.15 3.3E-06 44.9 2.9 31 182-217 2-32 (143)
430 PRK06851 hypothetical protein; 91.5 0.41 9E-06 49.6 6.4 43 174-217 210-252 (367)
431 PRK05506 bifunctional sulfate 91.5 0.25 5.4E-06 55.5 5.2 44 176-220 458-501 (632)
432 PRK05636 replicative DNA helic 91.5 0.26 5.7E-06 53.5 5.1 40 180-219 266-306 (505)
433 PRK08116 hypothetical protein; 91.5 0.29 6.3E-06 48.7 5.1 35 181-216 117-151 (268)
434 PF13604 AAA_30: AAA domain; P 91.4 0.3 6.5E-06 46.2 5.0 36 179-215 19-54 (196)
435 PTZ00301 uridine kinase; Provi 91.4 0.37 8E-06 46.1 5.6 40 179-219 4-45 (210)
436 cd04142 RRP22 RRP22 subfamily. 91.3 1.5 3.3E-05 41.3 9.7 67 285-352 48-129 (198)
437 COG1072 CoaA Panthothenate kin 91.3 0.37 8.1E-06 47.4 5.5 41 178-219 82-124 (283)
438 PRK00081 coaE dephospho-CoA ki 91.3 0.25 5.3E-06 46.6 4.2 35 177-218 1-35 (194)
439 PF13086 AAA_11: AAA domain; P 91.3 0.2 4.4E-06 47.8 3.7 34 181-214 19-60 (236)
440 PRK05380 pyrG CTP synthetase; 91.2 0.69 1.5E-05 50.0 7.9 49 177-225 1-50 (533)
441 PRK00698 tmk thymidylate kinas 91.1 0.4 8.6E-06 45.2 5.5 36 178-214 3-38 (205)
442 COG0572 Udk Uridine kinase [Nu 91.1 0.29 6.2E-06 46.7 4.3 39 179-220 9-47 (218)
443 cd04151 Arl1 Arl1 subfamily. 91.0 3.1 6.8E-05 37.1 11.1 67 284-351 41-112 (158)
444 PRK05537 bifunctional sulfate 90.9 0.34 7.3E-06 53.5 5.4 40 178-218 392-432 (568)
445 TIGR02236 recomb_radA DNA repa 90.9 0.32 7E-06 49.4 4.9 40 178-218 95-140 (310)
446 PRK08084 DNA replication initi 90.9 0.33 7.1E-06 47.3 4.7 37 180-217 47-83 (235)
447 PRK07004 replicative DNA helic 90.9 0.3 6.4E-06 52.6 4.8 39 181-219 215-254 (460)
448 cd04162 Arl9_Arfrp2_like Arl9/ 90.8 4.9 0.00011 36.3 12.3 67 284-351 42-111 (164)
449 cd02021 GntK Gluconate kinase 90.7 0.23 5.1E-06 44.3 3.4 32 183-219 3-34 (150)
450 cd04138 H_N_K_Ras_like H-Ras/N 90.7 6.6 0.00014 34.7 13.0 66 286-352 49-119 (162)
451 PF00004 AAA: ATPase family as 90.7 0.39 8.5E-06 41.4 4.7 30 185-217 4-33 (132)
452 PF13401 AAA_22: AAA domain; P 90.7 0.27 6E-06 42.5 3.7 39 181-219 6-49 (131)
453 PRK13946 shikimate kinase; Pro 90.5 0.3 6.6E-06 45.5 4.0 34 178-217 10-43 (184)
454 PRK09518 bifunctional cytidyla 90.5 1.9 4.2E-05 49.1 11.2 67 284-351 321-395 (712)
455 PF08423 Rad51: Rad51; InterP 90.4 0.17 3.6E-06 50.1 2.3 41 178-219 38-84 (256)
456 PF13238 AAA_18: AAA domain; P 90.4 0.26 5.6E-06 42.3 3.2 20 184-203 3-22 (129)
457 PF03266 NTPase_1: NTPase; In 90.3 0.46 1E-05 43.7 5.0 32 181-213 2-33 (168)
458 PF09848 DUF2075: Uncharacteri 90.3 0.34 7.3E-06 50.2 4.6 38 180-217 2-41 (352)
459 cd04144 Ras2 Ras2 subfamily. 90.3 3.5 7.5E-05 38.3 11.0 65 286-351 47-118 (190)
460 TIGR02729 Obg_CgtA Obg family 90.2 5.1 0.00011 41.1 13.0 65 286-351 205-285 (329)
461 PTZ00451 dephospho-CoA kinase; 90.2 0.38 8.2E-06 47.1 4.5 35 178-218 1-35 (244)
462 cd04116 Rab9 Rab9 subfamily. 90.2 4.1 8.9E-05 36.7 11.3 68 284-352 52-127 (170)
463 PRK14490 putative bifunctional 90.1 0.6 1.3E-05 48.7 6.3 39 178-218 5-43 (369)
464 cd04177 RSR1 RSR1 subgroup. R 90.0 5.1 0.00011 36.2 11.8 65 286-351 49-118 (168)
465 cd04156 ARLTS1 ARLTS1 subfamil 90.0 4.3 9.4E-05 36.1 11.1 66 285-351 43-113 (160)
466 cd04146 RERG_RasL11_like RERG/ 89.9 3.1 6.8E-05 37.4 10.2 66 285-351 46-118 (165)
467 smart00174 RHO Rho (Ras homolo 89.9 2.2 4.7E-05 38.7 9.2 68 284-352 44-115 (174)
468 PRK14730 coaE dephospho-CoA ki 89.9 0.45 9.7E-06 44.9 4.6 34 179-218 2-35 (195)
469 COG0523 Putative GTPases (G3E 89.8 8.2 0.00018 39.5 13.9 143 182-352 4-158 (323)
470 PF00931 NB-ARC: NB-ARC domain 89.8 0.36 7.8E-06 48.1 4.1 42 177-219 18-61 (287)
471 PRK14734 coaE dephospho-CoA ki 89.8 0.48 1E-05 44.9 4.8 33 178-217 1-33 (200)
472 PF02421 FeoB_N: Ferrous iron 89.7 1.3 2.8E-05 40.2 7.2 91 284-382 45-143 (156)
473 PLN02422 dephospho-CoA kinase 89.7 0.44 9.6E-06 46.2 4.5 34 178-218 1-34 (232)
474 cd04150 Arf1_5_like Arf1-Arf5- 89.7 5.1 0.00011 36.0 11.3 67 284-351 42-113 (159)
475 PRK04301 radA DNA repair and r 89.7 0.44 9.6E-06 48.6 4.8 39 179-218 103-147 (317)
476 COG2895 CysN GTPases - Sulfate 89.7 0.9 1.9E-05 46.2 6.6 102 284-385 84-185 (431)
477 PRK13973 thymidylate kinase; P 89.6 0.63 1.4E-05 44.5 5.5 36 178-214 3-38 (213)
478 PRK04220 2-phosphoglycerate ki 89.5 0.58 1.3E-05 47.0 5.3 37 178-219 92-128 (301)
479 cd04152 Arl4_Arl7 Arl4/Arl7 su 89.4 17 0.00038 33.4 16.4 67 284-351 50-121 (183)
480 PLN02348 phosphoribulokinase 89.3 0.74 1.6E-05 48.0 6.0 42 177-219 48-104 (395)
481 PRK13975 thymidylate kinase; P 89.3 0.42 9.1E-06 44.8 3.9 27 177-204 1-27 (196)
482 PRK03839 putative kinase; Prov 89.3 0.42 9.1E-06 44.2 3.9 32 180-217 2-33 (180)
483 COG2109 BtuR ATP:corrinoid ade 89.2 1.8 3.9E-05 40.3 7.7 35 179-215 30-64 (198)
484 cd01893 Miro1 Miro1 subfamily. 89.1 4.2 9.2E-05 36.7 10.5 68 284-352 45-116 (166)
485 KOG0744 AAA+-type ATPase [Post 89.1 0.43 9.3E-06 47.9 3.9 53 176-230 175-231 (423)
486 PRK09302 circadian clock prote 89.1 0.61 1.3E-05 50.9 5.6 40 178-218 273-312 (509)
487 PRK13949 shikimate kinase; Pro 89.0 0.37 8E-06 44.4 3.3 34 178-217 1-34 (169)
488 PRK01184 hypothetical protein; 88.9 0.5 1.1E-05 43.9 4.2 31 178-215 1-31 (184)
489 PRK12339 2-phosphoglycerate ki 88.9 0.41 9E-06 45.3 3.6 33 181-217 5-37 (197)
490 COG2074 2-phosphoglycerate kin 88.9 0.35 7.6E-06 46.9 3.0 40 174-217 83-123 (299)
491 PF13191 AAA_16: AAA ATPase do 88.9 0.54 1.2E-05 43.2 4.4 41 178-219 24-64 (185)
492 PLN03210 Resistant to P. syrin 88.9 0.64 1.4E-05 56.0 6.0 38 176-214 205-242 (1153)
493 KOG3381 Uncharacterized conser 88.9 0.79 1.7E-05 40.5 4.9 58 79-136 33-97 (161)
494 cd00879 Sar1 Sar1 subfamily. 88.8 4.6 9.9E-05 37.3 10.6 66 285-351 62-132 (190)
495 PRK13695 putative NTPase; Prov 88.7 0.77 1.7E-05 42.3 5.2 31 180-211 2-32 (174)
496 COG0125 Tmk Thymidylate kinase 88.6 0.86 1.9E-05 43.4 5.5 37 177-214 2-38 (208)
497 PF06414 Zeta_toxin: Zeta toxi 88.4 0.49 1.1E-05 44.7 3.8 40 179-220 15-54 (199)
498 cd00877 Ran Ran (Ras-related n 88.4 2.7 5.8E-05 38.2 8.6 68 284-352 47-117 (166)
499 PRK04004 translation initiatio 88.3 2.7 5.8E-05 46.7 10.0 64 287-351 72-135 (586)
500 cd02020 CMPK Cytidine monophos 88.2 0.43 9.4E-06 42.1 3.1 30 181-216 2-31 (147)
No 1
>PRK11670 antiporter inner membrane protein; Provisional
Probab=100.00 E-value=3.3e-50 Score=414.25 Aligned_cols=341 Identities=34% Similarity=0.547 Sum_probs=281.4
Q ss_pred ccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCeeeEEEEccc
Q 009574 80 TAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSA 159 (532)
Q Consensus 80 ~~~~~v~~~L~~V~DPel~~~Iv~lglv~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~v~l~~ 159 (532)
..+++|+++|++|.||+++.|||++|+|+++.+++ +++.+.++++.+.||..+.+.+++++++..++|++++.+++..
T Consensus 12 ~~~~~v~~~l~~v~~p~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (369)
T PRK11670 12 ALRAMVAGTLANFQHPTLKHNLTTLKALHHVALLD--DTLHIELVMPFVWNSAFEELKEQCSAELLRITGAKAIDWKLSH 89 (369)
T ss_pred chHHHHHHHHhcCCCCCCCCChhhhCCeeEEEEeC--CEEEEEEEECCCCchHHHHHHHHHHHHHHhcCCCceEEEEEee
Confidence 46689999999999999999999999999999987 7999999999999999999999999999999999988887765
Q ss_pred CCCcchhhccccccccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCC
Q 009574 160 QPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEK 239 (532)
Q Consensus 160 ~p~~~~~~~~~~~~~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~ 239 (532)
...... ...-...+.+++++|+|+|+||||||||+|+|||.+||+.|+||++||+|+|+++++.+||.++..... ...
T Consensus 90 ~~~~~~-~~~~~~~~~~~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~~~~lg~~~~~~~~-~~~ 167 (369)
T PRK11670 90 NIATLK-RVNNQPGVNGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAEDQRPTS-PDG 167 (369)
T ss_pred ehhhhc-cccccccCCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCcchhcCCcccCCcc-cCC
Confidence 322110 101123577899999999999999999999999999999999999999999999999988865321111 112
Q ss_pred CceeecccCCcEEEecCCC--CCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEe
Q 009574 240 RTIIPTEYLGVKLVSFGFS--GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVT 317 (532)
Q Consensus 240 ~~i~~~~~~~l~vl~~~~~--~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~ 317 (532)
..+.+....++...+.+.. ......|++++....+.+++....|++|||||||||||+++..++..++.++|.+++|+
T Consensus 168 ~~i~p~~~~g~~~~~~~~l~~~~~~~i~~g~~~~~~l~~~l~~~~~~~yDyvIID~PPg~gd~~l~~~~l~aad~viiV~ 247 (369)
T PRK11670 168 THMAPIMAHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVT 247 (369)
T ss_pred ceeeeeeccCcccccHHHhcCcCcceeecCcchHHHHHHHHHHHhhccCCEEEEeCCCCCchHHHHHhhhccCCeEEEEe
Confidence 2344433344443332221 12234567777777888887655578999999999999999777777777899999999
Q ss_pred CCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCC--CccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCC
Q 009574 318 TPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDAD--GKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGM 395 (532)
Q Consensus 318 ~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~--~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~ 395 (532)
+|+..++.++.+.++++.+.+++++|+|+||+++.+. ++.+..|+++..+++++.|+.++++.||++..+.++.+.|+
T Consensus 248 tp~~~s~~da~~~i~~~~~~~~~ilGiV~Nm~~~~~~~~~~~~~if~~~~~~~lae~~~~~ll~~IP~~~~I~ea~~~G~ 327 (369)
T PRK11670 248 TPQDIALIDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHISLREDLDRGT 327 (369)
T ss_pred cCchhHHHHHHHHHHHHhccCCCeEEEEEcCCccccCCccchhhhcccchHHHHHHHcCCcEEEEeCCChHHHHHHHCCC
Confidence 9999999999999999999999999999999877653 33344577778999999999999999999999999999999
Q ss_pred ceEEeCCCCHHHHHHHHHHHHHHHHHHHh
Q 009574 396 PEVAADPCGEVANTFQDLGVCVVQQCAKI 424 (532)
Q Consensus 396 pv~~~~p~s~~a~~~~~La~~i~~~~~~~ 424 (532)
|+..+.|+++++++|.++++++.+++...
T Consensus 328 Pv~~~~p~s~~a~~y~~LA~el~~~~~~~ 356 (369)
T PRK11670 328 PTVVSRPESEFTAIYRQLADRVAAQLYWQ 356 (369)
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999887544
No 2
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.1e-43 Score=336.00 Aligned_cols=290 Identities=40% Similarity=0.613 Sum_probs=246.4
Q ss_pred CCchHHHHHHHHHHHhcCCCeeeEEEEcccCCCcchhhccccccccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCc
Q 009574 130 CPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR 209 (532)
Q Consensus 130 cp~~~~l~~~i~~~L~~l~gv~~v~v~l~~~p~~~~~~~~~~~~~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~r 209 (532)
||..+.....-.+.....++++.... ....+..... .....+.+.+++|+|.|+||||||||+|+|||.+||+.|++
T Consensus 2 cpg~~s~~ag~~~~~~g~~~~~~~~~-~~~~~~~~~~--~~~~~l~~vk~iI~VlSGKGGVGKSTvt~nla~~La~~g~~ 78 (300)
T KOG3022|consen 2 CPGVLSSEAGKAEECAGCPNVGYCSS-SPVQPDPDIP--AKQENLSGVKHIILVLSGKGGVGKSTVTVNLALALASEGKK 78 (300)
T ss_pred CCCcchhhhcchhhccCCcccccccc-CCcCcCCCcc--cccccccccceEEEEEeCCCCCchhHHHHHHHHHHhcCCCc
Confidence 77777666666666666666554432 1111111111 12457888899999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCcccccccCCCCCceee-cccCCcEEEecCCCC---CcccccCCchHHHHHHHHHHhcccCC
Q 009574 210 VGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIP-TEYLGVKLVSFGFSG---QGRAIMRGPMVSGVINQLLTTTEWGE 285 (532)
Q Consensus 210 VllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~-~~~~~l~vl~~~~~~---~~~~~~~~~~~~~~l~~ll~~~~~~~ 285 (532)
|.++|+|..+|+++.++|.+.+... .....+.| ....|+.+++.++.. ++..+|++++...+|++++....|++
T Consensus 79 vglLD~Dl~GPSiP~m~g~e~~~~~--~~~~g~~Pv~~~~~l~~mS~gfLl~~~~~~vIwRGpkk~~~I~qflk~vdwg~ 156 (300)
T KOG3022|consen 79 VGLLDADLCGPSIPRMMGLEGEVVH--QSDNGWIPVVVNKNLKLMSMGFLLKPRDDSVIWRGPKKNSMIKQFLKDVDWGE 156 (300)
T ss_pred EEEEeecccCCCchhhcCCCCceee--ecCCCceeeeecCCeEEEEeeeecCCCCccceeechHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999887633 22334444 567899999998754 45789999999999999999999999
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCC-CeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccC--CCccccccC
Q 009574 286 LDYLVIDMPPGTGDIQLTLCQVVPL-TAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA--DGKRYYPFG 362 (532)
Q Consensus 286 yD~VIIDtpp~~~~~~~~~~~~~~~-d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~--~~~~~~~~~ 362 (532)
.||+|||||||+++.++++.+.... +++++|++|+..++.++++.++++++.+++++|+|.||+.|.+ +++..+.|+
T Consensus 157 lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~vAl~Dv~K~i~fc~K~~I~ilGvVENMs~f~Cp~C~~~~~iF~ 236 (300)
T KOG3022|consen 157 LDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQEVALQDVRKEIDFCRKAGIPILGVVENMSGFVCPKCGHSTNIFG 236 (300)
T ss_pred cCEEEEeCCCCCChhhhheeecccccCceEEEeCchhhhhHHHHhhhhhhhhcCCceEEEEeccccccCCCCCCcceecc
Confidence 9999999999999999988766655 8899999999999999999999999999999999999999987 477777899
Q ss_pred CchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEeCCCCHHHHHHHHHHHHHHHHHHHh
Q 009574 363 RGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANTFQDLGVCVVQQCAKI 424 (532)
Q Consensus 363 ~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~s~~a~~~~~La~~i~~~~~~~ 424 (532)
.+..+.+.+.+|+++++.||.|+.+.++.+.|.|+++..|+++++++|.+++++|.+.+...
T Consensus 237 ~gGg~~l~~~~glp~Lg~iPld~~i~~~~d~G~~~v~~~p~s~~~~af~~i~~~i~~~~~~~ 298 (300)
T KOG3022|consen 237 SGGGERLAEELGLPLLGSLPLDPLIAESSDSGVPFVEEYPDSPASEAFEDIAEKLVEQLSSK 298 (300)
T ss_pred CccHHHHHHHcCCCeEeecCCCHHHHHhccCCCeeEecCCCchHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999887543
No 3
>CHL00175 minD septum-site determining protein; Validated
Probab=100.00 E-value=1e-31 Score=269.47 Aligned_cols=237 Identities=24% Similarity=0.315 Sum_probs=185.0
Q ss_pred cccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccc--------cccCCCCCceee
Q 009574 173 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL--------LEMNPEKRTIIP 244 (532)
Q Consensus 173 ~~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~--------~~~~~~~~~i~~ 244 (532)
..++|+++|+|+|+||||||||+|+|||.+|++.|+||++||+|+++++++.++|.+... .+.....+.+..
T Consensus 10 ~~~~~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~~~~~ 89 (281)
T CHL00175 10 KSATMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQALIR 89 (281)
T ss_pred hcCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhhheee
Confidence 456788999999999999999999999999999999999999999988899888876421 111112223332
Q ss_pred -cccCCcEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch
Q 009574 245 -TEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 323 (532)
Q Consensus 245 -~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s 323 (532)
..++|++++|++...... .+. ...+.++++.+.+..||||||||||+.+...... +.++|.+++|++|+..+
T Consensus 90 ~~~~~~l~~l~~~~~~~~~-~~~----~~~l~~~l~~l~~~~yD~VIiDtpp~~~~~~~~~--l~~aD~viiV~~p~~~s 162 (281)
T CHL00175 90 DKRWKNLSLLAISKNRQRY-NVT----RKNMNMLVDSLKNRGYDYILIDCPAGIDVGFINA--IAPAQEAIVVTTPEITA 162 (281)
T ss_pred cCCCCCeEEEeCCCchhhc-cCC----HHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHH--HHhcCeeEEEcCCChHH
Confidence 346899999976543221 111 1235566655542389999999999987654443 56789999999999999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEeCCC
Q 009574 324 FIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPC 403 (532)
Q Consensus 324 ~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~ 403 (532)
+.++.++++.+++.+....++|+|++..+....+ .....+++++.++.++++.||++..+.+|...|+|+..+.|+
T Consensus 163 i~~~~~~~~~l~~~~~~~~~lvvN~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~Ip~d~~v~~a~~~g~~~~~~~~~ 238 (281)
T CHL00175 163 IRDADRVAGLLEANGIYNVKLLVNRVRPDMIQAN----DMMSVRDVQEMLGIPLLGAIPEDENVIISTNRGEPLVLNKKL 238 (281)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEeccChhhhhhh----ccccHHHHHHHhCCCeEEEccCCHhHHHHHHcCCceEeCCCC
Confidence 9999999999998887778999999764321110 111356788889999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 009574 404 GEVANTFQDLGVCVVQQ 420 (532)
Q Consensus 404 s~~a~~~~~La~~i~~~ 420 (532)
++++++|++||++|..+
T Consensus 239 ~~~~~~~~~la~~l~~~ 255 (281)
T CHL00175 239 TLSGIAFENAARRLVGK 255 (281)
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 99999999999998864
No 4
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=100.00 E-value=1e-31 Score=268.26 Aligned_cols=232 Identities=19% Similarity=0.169 Sum_probs=172.4
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcc--ccccc--------CCCCCceeeccc
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLLEM--------NPEKRTIIPTEY 247 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~--~~~~~--------~~~~~~i~~~~~ 247 (532)
||+|+|+ +||||||||+|+|||.+||++|+||++||+|+|++++..++|... .+.+. ....+.+.+. .
T Consensus 1 ~~~iav~-gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~~~~l~g~~~~~~~~d~l~~~~~~~~~~~~~i~~~-~ 78 (273)
T PRK13232 1 MRQIAIY-GKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQPG-F 78 (273)
T ss_pred CCEEEEE-CCCCCcHHHHHHHHHHHHHhhCCCeEEEecccccccchhhcCCCCCCcHHHHHHhcCCCCCCHHHEEEeC-C
Confidence 4899999 999999999999999999999999999999999999988876422 11110 1112233343 6
Q ss_pred CCcEEEecCCCCCccc-ccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChh-hhhhhhhcCCCeEEEEeCCCcchHH
Q 009574 248 LGVKLVSFGFSGQGRA-IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFI 325 (532)
Q Consensus 248 ~~l~vl~~~~~~~~~~-~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~-~~~~~~~~~~d~viiV~~p~~~s~~ 325 (532)
+|++++|++....... ..++......+.+.+..+ +++||||||||+++.... ......+.++|.+++|++|+..++.
T Consensus 79 ~~i~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~ 157 (273)
T PRK13232 79 GDIKCVESGGPEPGVGCAGRGIITSIGLLENLGAY-TDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIY 157 (273)
T ss_pred CCeEEEeCCCCCCCCCCCCCchhHHHHHHHHcccc-cccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHH
Confidence 7999999765322111 112222222355555544 478999999998765311 1111113478999999999999999
Q ss_pred HHHHHHHHHHcC---CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEeCC
Q 009574 326 DVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADP 402 (532)
Q Consensus 326 ~~~~~i~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p 402 (532)
++.++++.++.. +.++.|+|+||.. .. ..++..+++.+.++..+++.||.+..+.+|...|+|+..+.|
T Consensus 158 ~~~~~~k~l~~~~~~~l~~~GiV~n~~~--~~------~~~~~~e~l~~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~p 229 (273)
T PRK13232 158 AANNICKGLAKFAKGGARLGGIICNSRN--VD------GERELLEAFAKKLGSQLIHFVPRDNIVQRAEINRKTVIDFDP 229 (273)
T ss_pred HHHHHHHHHHHHhCCCCceeEEEEeCCC--CC------ccHHHHHHHHHHhCCCeEEECCCCHHHHHHHHcCCCeEEeCC
Confidence 988887777653 5678899999843 11 123467889999998888999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 009574 403 CGEVANTFQDLGVCVVQQ 420 (532)
Q Consensus 403 ~s~~a~~~~~La~~i~~~ 420 (532)
+++++++|.++++++.++
T Consensus 230 ~s~~a~~y~~La~el~~~ 247 (273)
T PRK13232 230 ESNQAKEYLTLAHNVQNN 247 (273)
T ss_pred CChHHHHHHHHHHHHHhC
Confidence 999999999999999865
No 5
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=100.00 E-value=1.3e-31 Score=263.93 Aligned_cols=227 Identities=25% Similarity=0.354 Sum_probs=176.5
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc---ccc----cCCCCCceeecccCCcE
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---LLE----MNPEKRTIIPTEYLGVK 251 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~---~~~----~~~~~~~i~~~~~~~l~ 251 (532)
|+|+|+|+||||||||+|+|||.+||++|+||++||+|+|++++..++|.+.. +.. .....+.+.. ...|++
T Consensus 1 ~ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 79 (251)
T TIGR01969 1 RIITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYE-GPFGVK 79 (251)
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeEeCCCCCCCCHHHHhcCCCCHHHheEe-CCCCEE
Confidence 48999999999999999999999999999999999999998888888887642 111 1111222222 346899
Q ss_pred EEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHH
Q 009574 252 LVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGV 331 (532)
Q Consensus 252 vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i 331 (532)
++|++.......... ...+.+++..+. +.||||||||||+.+...... +..+|.+++|++|+..++.++.+.+
T Consensus 80 ~lp~~~~~~~~~~~~----~~~l~~~l~~l~-~~yD~VIiD~p~~~~~~~~~~--l~~ad~vliv~~~~~~s~~~~~~~~ 152 (251)
T TIGR01969 80 VIPAGVSLEGLRKAD----PDKLEDVLKEII-DDTDFLLIDAPAGLERDAVTA--LAAADELLLVVNPEISSITDALKTK 152 (251)
T ss_pred EEeCCCCHHHHhhcC----HHHHHHHHHHHH-hhCCEEEEeCCCccCHHHHHH--HHhCCeEEEEECCCCchHHHHHHHH
Confidence 999775332221111 223455555544 789999999999998765544 5678999999999999999988888
Q ss_pred HHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEeCCCCHHHHHHH
Q 009574 332 RMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANTFQ 411 (532)
Q Consensus 332 ~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~s~~a~~~~ 411 (532)
+.++..+.+..++|+|++..... ....+.+.+.++.++++.||++..+.+|...|+|+.++.|.++++++|+
T Consensus 153 ~~~~~~~~~~~~vv~N~~~~~~~--------~~~~~~l~~~~~~~~l~~Ip~~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 224 (251)
T TIGR01969 153 IVAEKLGTAILGVVLNRVTRDKT--------ELGREEIETILEVPVLGVVPEDPEVRRAAAFGEPVVIYNPNSPAAQAFM 224 (251)
T ss_pred HHHHhcCCceEEEEEECCCchhh--------hhHHHHHHHhhCCcEEEEecCCHhHHHHHHcCCceEEeCCCCHHHHHHH
Confidence 88888888889999999653211 1134567777888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 009574 412 DLGVCVVQQC 421 (532)
Q Consensus 412 ~La~~i~~~~ 421 (532)
+|+++|..+-
T Consensus 225 ~la~~i~~~~ 234 (251)
T TIGR01969 225 ELAAELAGIE 234 (251)
T ss_pred HHHHHHHhcc
Confidence 9999987543
No 6
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=99.97 E-value=1e-30 Score=261.15 Aligned_cols=234 Identities=20% Similarity=0.173 Sum_probs=166.0
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--cccc------CCCCCceeecccCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEM------NPEKRTIIPTEYLG 249 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--~~~~------~~~~~~i~~~~~~~ 249 (532)
||+|+|+ +||||||||+|+|||++||++|+|||+||+|+|++++..++|.... +.+. ....+.+.....+|
T Consensus 1 m~~iav~-~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~t~~l~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~ 79 (274)
T PRK13235 1 MRKVAIY-GKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLLLGGLAQKTVLDTLREEGEDVELEDIRKEGYGG 79 (274)
T ss_pred CCEEEEe-CCCCccHHHHHHHHHHHHHHCCCcEEEEecCCcccccccccCCCCCccHHHHHHhcCCCCCHHHHhhcCCCC
Confidence 5799999 7999999999999999999999999999999999988877643211 1110 11112344445689
Q ss_pred cEEEecCCCCCccccc-CCchHH-HHHHHHHHhcccCCCCEEEEcCCCCCChhh-hhhhhhcCCCeEEEEeCCCcchHHH
Q 009574 250 VKLVSFGFSGQGRAIM-RGPMVS-GVINQLLTTTEWGELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAFID 326 (532)
Q Consensus 250 l~vl~~~~~~~~~~~~-~~~~~~-~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~-~~~~~~~~~d~viiV~~p~~~s~~~ 326 (532)
++++|++......... +..... ..++++......++||||||||+++..... .....+.++|.+++|++|+..|+.+
T Consensus 80 l~~ip~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~e~~sl~g 159 (274)
T PRK13235 80 TRCTESGGPEPGVGCAGRGIITSVNLLEQLGAYDDEWNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGEMMAMYA 159 (274)
T ss_pred CEEEeCCCCCCCCCCCCCceeehhHHHHhhchhhccCCCCEEEEECCCCCccCCcccccccccccEEEEEecCchhHHHH
Confidence 9999976322211000 010010 223322111012689999999976543211 1111123789999999999999999
Q ss_pred HHHHHHHHHc----CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEeCC
Q 009574 327 VAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADP 402 (532)
Q Consensus 327 ~~~~i~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p 402 (532)
+.++++.+++ .++++.|+|+|+... ...++..+++.+.++.++++.||++..+.+|...|+|++++.|
T Consensus 160 ~~~ll~~i~~~~~~~~l~i~giv~n~~~~--------~~~~e~~~~l~~~~~~~ll~~Ip~~~~v~~A~~~g~pv~~~~p 231 (274)
T PRK13235 160 ANNICKGILKYADAGGVRLGGLICNSRKV--------DNEREMIEELARKIGTQMIHFVPRDNFVQRAEINRKTVIEYDP 231 (274)
T ss_pred HHHHHHHHHHHhhcCCCceeEEEEecCCC--------CchHHHHHHHHHHcCCceEEeCCCCHHHHHHHhcCCcEEEECC
Confidence 9888876654 356678999997321 1123567888889998888899999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 009574 403 CGEVANTFQDLGVCVVQQ 420 (532)
Q Consensus 403 ~s~~a~~~~~La~~i~~~ 420 (532)
+++++++|+++++++.++
T Consensus 232 ~s~~a~~y~~La~el~~~ 249 (274)
T PRK13235 232 THPQADEYRALARKIDEN 249 (274)
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999999755
No 7
>PRK13236 nitrogenase reductase; Reviewed
Probab=99.97 E-value=5e-31 Score=265.54 Aligned_cols=245 Identities=19% Similarity=0.159 Sum_probs=177.7
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--cccc---------CCCCCceeec
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEM---------NPEKRTIIPT 245 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--~~~~---------~~~~~~i~~~ 245 (532)
.+++|+| +|||||||||+|+|||+.||++|+|||+||+|+|++++..+++.... +.+. ....+.+ ..
T Consensus 5 ~~~~~~~-~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~~~~l~~~~~~~tl~d~~~~~~~~~~~~l~~~i-~~ 82 (296)
T PRK13236 5 NIRQIAF-YGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELHEVM-LT 82 (296)
T ss_pred CceEEEE-ECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCccchhccCCCCCCHHHHHHhcCCccCCCHHHhh-ee
Confidence 3589999 68999999999999999999999999999999999999988875432 2111 1112223 34
Q ss_pred ccCCcEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCCh-hhhhhhhhcCCCeEEEEeCCCcchH
Q 009574 246 EYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD-IQLTLCQVVPLTAAVIVTTPQKLAF 324 (532)
Q Consensus 246 ~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~-~~~~~~~~~~~d~viiV~~p~~~s~ 324 (532)
...|++++|++...... ...+......++.+.....|++||||+|||++.... .......+.++|.+++|++|+..++
T Consensus 83 ~~~gv~llpa~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~yD~vliD~~~~~~~~~~~~~~~l~aAD~vIIvttpe~~sl 161 (296)
T PRK13236 83 GFRGVKCVESGGPEPGV-GCAGRGIITAINFLEENGAYQDLDFVSYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMAM 161 (296)
T ss_pred CCCCeEEEECCCCCCCC-CCcceeehhhhHHHHhcCccccCCEEEEeccccceeccccccchhccCCEEEEecCcchHHH
Confidence 56799999987433221 122222222345555444568999999999654321 1111111347899999999999999
Q ss_pred HHHHHHHHHH----HcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEe
Q 009574 325 IDVAKGVRMF----SKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAA 400 (532)
Q Consensus 325 ~~~~~~i~~l----~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~ 400 (532)
.++.++++.+ +..+.++.|+|+||.. ... ..+..+++++.++..+++.||++..+.+|...|+|+..+
T Consensus 162 ~g~~~~~~~l~k~~~~~~l~i~gIv~Nr~~--~~~------~~~ile~l~~~~g~~vl~~Ip~~~~v~eA~~~~~Pv~~~ 233 (296)
T PRK13236 162 YAANNIARGILKYAHTGGVRLGGLICNSRN--VDR------EIELIETLAKRLNTQMIHFVPRDNIVQHAELRRMTVNEY 233 (296)
T ss_pred HHHHHHHHHHHHHhhCCCceeEEEEecCCC--Ccc------hHHHHHHHHHHhCccceeeCCCChHHHHHHHcCCChhhc
Confidence 8887554433 3446788999999832 211 113578899999988889999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhccccceeec
Q 009574 401 DPCGEVANTFQDLGVCVVQQCAKIRQQVSTAVIYD 435 (532)
Q Consensus 401 ~p~s~~a~~~~~La~~i~~~~~~~~~~vs~~v~~d 435 (532)
.|+++++++|++++++++++.+. .+|.+...+
T Consensus 234 ~p~s~~a~~y~~La~ell~~~~~---~~p~~~~~~ 265 (296)
T PRK13236 234 APDSNQGNEYRALAKKIINNDNL---TIPTPIEME 265 (296)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCC---CCCCCCCHH
Confidence 99999999999999999875533 567765443
No 8
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=99.97 E-value=1.5e-31 Score=244.76 Aligned_cols=229 Identities=22% Similarity=0.308 Sum_probs=181.3
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccc--------cCCCC-Cceeeccc
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE--------MNPEK-RTIIPTEY 247 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~--------~~~~~-~~i~~~~~ 247 (532)
|+++|.|+||||||||||+++||+.+||++|+||++||+|..--+++..+|.++++.. ..... ..+.....
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr~ 80 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKRL 80 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhcccceeeeeehhhhcCccchhhHhhccccC
Confidence 6789999999999999999999999999999999999999988889999999987321 11112 23444567
Q ss_pred CCcEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHH
Q 009574 248 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDV 327 (532)
Q Consensus 248 ~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~ 327 (532)
+||.++|+....+-.. +..+.....++++. ...|||||+|||.|....... ++..+|.+++|++|+..|+++.
T Consensus 81 ~nL~lLPAsQtrdKda-lt~E~v~~vv~eL~----~~~fDyIi~DsPAGIE~G~~~--A~~~Ad~AiVVtnPEvSsVRDs 153 (272)
T COG2894 81 ENLFLLPASQTRDKDA-LTPEGVKKVVNELK----AMDFDYIIIDSPAGIEQGFKN--AVYFADEAIVVTNPEVSSVRDS 153 (272)
T ss_pred CceEecccccccCccc-CCHHHHHHHHHHHH----hcCCCEEEecCcchHHHHHHh--hhhccceEEEEcCCCccccccc
Confidence 8999999876544322 23334444555554 368999999999998755443 3668899999999999999999
Q ss_pred HHHHHHHHcCC----CC---EEEEEEecccccC--CCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceE
Q 009574 328 AKGVRMFSKLK----VP---CIAVVENMCHFDA--DGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEV 398 (532)
Q Consensus 328 ~~~i~~l~~~~----~~---~~gvV~N~~~~~~--~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~ 398 (532)
.|.+..++..+ .. ...+++||+++.. +++. -..+++.+.+.+++++.||.+..+-.|.+.|.|+.
T Consensus 154 DRiiGlLesk~~rae~~~~~~~~llvnR~~p~~v~~GeM------lsv~Dv~~iL~i~liGiiPed~~Vi~asN~GePv~ 227 (272)
T COG2894 154 DRIIGLLESKSRRAEIGEEPKEHLLLNRYRPEMVKRGEM------LSVEDVLEILSIPLIGVIPEDQDVLRASNKGEPVI 227 (272)
T ss_pred hhheeehhcccchhhcCCcccceEEEEccCHHHhccCCc------ccHHHHHHHhCCceEEeecCchhhheecCCCCCeE
Confidence 99999987654 22 3689999976543 2211 25789999999999999999999999999999998
Q ss_pred EeCCCCHHHHHHHHHHHHHHH
Q 009574 399 AADPCGEVANTFQDLGVCVVQ 419 (532)
Q Consensus 399 ~~~p~s~~a~~~~~La~~i~~ 419 (532)
... .+.++++|+++|++++.
T Consensus 228 l~~-~~~a~~Ay~d~arRllG 247 (272)
T COG2894 228 LDD-NSDAGKAYRDIARRLLG 247 (272)
T ss_pred eCC-CchHHHHHHHHHHHHhC
Confidence 754 56999999999998873
No 9
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.97 E-value=4.1e-31 Score=259.85 Aligned_cols=234 Identities=19% Similarity=0.245 Sum_probs=170.2
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccccc----c----cCCCCCceeecccCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL----E----MNPEKRTIIPTEYLG 249 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~----~----~~~~~~~i~~~~~~~ 249 (532)
|++|+|+|+||||||||+|+|||..||++|+||++||+|+|++ +..++|.+.... . .....+.+.. ..+|
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~~-l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~ 78 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQNL-LRLHFGMDWSVRDGWARALLNGEPWAAAAYR-SSDG 78 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcch-HHHHhCCCCccCCcHHHHHhcCCChHHhHhh-cCCC
Confidence 6799999999999999999999999999999999999999974 555666543211 0 0011112222 3478
Q ss_pred cEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 009574 250 VKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 329 (532)
Q Consensus 250 l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~ 329 (532)
++++|.+.................++++++.+.+..||||||||||+.+.....+ +.++|.+++|+.|+..++..+.+
T Consensus 79 l~~ip~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~viiD~pp~~~~~~~~~--l~~ad~vii~~~~~~~s~~~~~~ 156 (246)
T TIGR03371 79 VLFLPFGDLSADEREAYQAHDAGWLARLLQQLDLAARDWVLIDVPRGPSPITRQA--LAAADLVLVVVNADAACYATLHQ 156 (246)
T ss_pred eEEecCCCCcHHHHHHHhhcCHHHHHHHHHhcccCCCCEEEEECCCCchHHHHHH--HHhCCeEEEEeCCCHHHHHHHHH
Confidence 9999976432211111111123456677766654456999999999988765544 66889999999999999998884
Q ss_pred -HHHHHHcCCCC-EEEEEEecccccCCCccccccCCchHHHHHHHhCCC-cEEeccCchhhhhcccCCCceEEeCCCCHH
Q 009574 330 -GVRMFSKLKVP-CIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIP-HLFDLPIRPTLSASGDSGMPEVAADPCGEV 406 (532)
Q Consensus 330 -~i~~l~~~~~~-~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~-~l~~IP~~~~i~~a~~~g~pv~~~~p~s~~ 406 (532)
+.++++..+.+ ..++|+|++.... ...++..+.+.+.++.+ +.+.||++..+.++...|+|++++.|++++
T Consensus 157 ~~~~l~~~~~~~~~~~iv~n~~~~~~------~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~a~~~g~pv~~~~~~s~~ 230 (246)
T TIGR03371 157 QALALFAGSGPRIGPHFLINQFDPAR------QLSRDVRAVLRQTLGSRLLPFVIHRDEAVSEALARGTPVLNYAPHSQA 230 (246)
T ss_pred HHHHHhhcccccccceEEeeccCcch------hhHHHHHHHHHHHhcccccCCcccchhhHHHHHHcCCCccccCCcCHH
Confidence 44555533322 3789999965332 12234556677888876 457799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 009574 407 ANTFQDLGVCVVQQC 421 (532)
Q Consensus 407 a~~~~~La~~i~~~~ 421 (532)
+++|++++++|++++
T Consensus 231 ~~~~~~la~~~l~~~ 245 (246)
T TIGR03371 231 AHDIRTLAGWLLSKL 245 (246)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998765
No 10
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=99.97 E-value=1.1e-30 Score=261.04 Aligned_cols=233 Identities=16% Similarity=0.180 Sum_probs=169.3
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHH-CCCcEEEEEcCCCCCCCCCCCCCccc--cccc-------CCCCCceeecc
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENR--LLEM-------NPEKRTIIPTE 246 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~-~G~rVllID~D~~~~s~~~~lg~~~~--~~~~-------~~~~~~i~~~~ 246 (532)
|+|+|+|+ +||||||||+|+|||++||+ .|+|||+||+|+|++++..++|.... +.+. ....+.+....
T Consensus 1 M~~vIav~-~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~t~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 79 (275)
T PRK13233 1 MTRKIAIY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIKTG 79 (275)
T ss_pred CceEEEEE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcChHHHHhCCCCCCcHHHHHHHhCCCCCCHHHHeeeC
Confidence 67999999 89999999999999999997 59999999999999887766665422 1110 11123345556
Q ss_pred cCCcEEEecCCCCCccccc-CCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhh--cCCCeEEEEeCCCcch
Q 009574 247 YLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQV--VPLTAAVIVTTPQKLA 323 (532)
Q Consensus 247 ~~~l~vl~~~~~~~~~~~~-~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~--~~~d~viiV~~p~~~s 323 (532)
.+|++++|++......... +.......+.+.++.+. ++||||||||++......+.. .+ .++|.+++|++|+..+
T Consensus 80 ~~~l~~ipa~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~yD~iliD~~~~~~~~al~~-~~~~~aad~viIp~~p~~~s 157 (275)
T PRK13233 80 FKDIRCVESGGPEPGVGCAGRGVITAIDLMEENGAYT-DDLDFVFFDVLGDVVCGGFAM-PIRDGKAQEVYIVASGEMMA 157 (275)
T ss_pred CCCcEEEECCCCCCCCCCCCcchhHHHHHHHHcCCcc-CCCCEEEEecCCceeeccccc-cchhccCceEEEeccccHHH
Confidence 7899999987543211111 11111112444444443 789999999954332111100 00 1689999999999999
Q ss_pred HHHHHHHHHHH----HcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEE
Q 009574 324 FIDVAKGVRMF----SKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVA 399 (532)
Q Consensus 324 ~~~~~~~i~~l----~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~ 399 (532)
+.++.++++.+ ++.++++.|+|+|+.. .. ..++..+++.+.++.+++..||++..+.+|...|+|+++
T Consensus 158 l~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~--~~------~~~~~~e~l~~~~~~~~l~~Ip~~~~v~~A~~~g~pv~~ 229 (275)
T PRK13233 158 IYAANNICKGLVKYAEQSGVRLGGIICNSRN--VD------GELELLEEFTDAIGTQMIHFVPRDNIVQKAEFNKKTVVE 229 (275)
T ss_pred HHHHHHHHHHHHHHHhcCCCceeEEEeeCCC--CC------cHHHHHHHHHHHcCCceeeecCcchHHHHHHHcCCCEEE
Confidence 99999887665 3456778999999732 11 122467888899998888999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHHHH
Q 009574 400 ADPCGEVANTFQDLGVCVVQQ 420 (532)
Q Consensus 400 ~~p~s~~a~~~~~La~~i~~~ 420 (532)
+.|+++++++|.++++++.++
T Consensus 230 ~~~~s~~a~~y~~La~ell~~ 250 (275)
T PRK13233 230 FDPDCNQAKEYKELARKIIEN 250 (275)
T ss_pred ECCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999764
No 11
>PRK10818 cell division inhibitor MinD; Provisional
Probab=99.97 E-value=6.2e-30 Score=255.12 Aligned_cols=231 Identities=17% Similarity=0.223 Sum_probs=173.6
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccc----c----ccCCCCCceeec-cc
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL----L----EMNPEKRTIIPT-EY 247 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~----~----~~~~~~~~i~~~-~~ 247 (532)
|+|+|+|+|+||||||||+|+|||.+||++|+||++||+|+++++++.++|.+... . ......+.+... ..
T Consensus 1 m~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (270)
T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRT 80 (270)
T ss_pred CceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCChhhhhCCCcccccCHHHHhcCCCcHHHhccccCCc
Confidence 67999999999999999999999999999999999999999988888888875321 1 111111222222 35
Q ss_pred CCcEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHH
Q 009574 248 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDV 327 (532)
Q Consensus 248 ~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~ 327 (532)
+|++++|++.... ...+. ...+.++++.+.+..||||||||||+++...... +..+|.+++|++|+..++.++
T Consensus 81 ~~~~~lp~~~~~~-~~~~~----~~~~~~~l~~l~~~~yd~viiD~p~~~~~~~~~~--l~~ad~vivv~~p~~~sl~~~ 153 (270)
T PRK10818 81 ENLYILPASQTRD-KDALT----REGVAKVLDDLKAMDFEFIVCDSPAGIETGALMA--LYFADEAIITTNPEVSSVRDS 153 (270)
T ss_pred CCEEEecCCCCcc-hhhhC----HHHHHHHHHHHhhcCCCEEEEeCCCCccHHHHHH--HHhCCeEEEEcCCCchHHHhH
Confidence 7999999875332 11111 1234555555543589999999999998765544 668899999999999999999
Q ss_pred HHHHHHHHcC-------CCC-EEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEE
Q 009574 328 AKGVRMFSKL-------KVP-CIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVA 399 (532)
Q Consensus 328 ~~~i~~l~~~-------~~~-~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~ 399 (532)
.++++.+... +.+ ..++|+|++....... ......+++.+.+|.++++.||++..+.+|...|+|+.
T Consensus 154 ~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~Ip~~~~v~~a~~~G~~v~- 228 (270)
T PRK10818 154 DRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSR----GDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVI- 228 (270)
T ss_pred HHHHHHHHHhhccccccccccceEEEEeccCHhhhhh----cccccHHHHHHHhCCcEEEEecCCHHHHHHHHcCCeeE-
Confidence 9999987632 112 2589999965432110 01124678888899989999999999999999999998
Q ss_pred eCCCCHHHHHHHHHHHHHHH
Q 009574 400 ADPCGEVANTFQDLGVCVVQ 419 (532)
Q Consensus 400 ~~p~s~~a~~~~~La~~i~~ 419 (532)
+.|+++++++|++|++++..
T Consensus 229 ~~~~~~~~~~~~~la~~l~~ 248 (270)
T PRK10818 229 LDIEADAGKAYADTVDRLLG 248 (270)
T ss_pred eCCCCHHHHHHHHHHHHHhC
Confidence 67889999999999998753
No 12
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=99.97 E-value=6e-30 Score=255.11 Aligned_cols=234 Identities=19% Similarity=0.202 Sum_probs=168.0
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--cccc------C--CCCCceeeccc
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEM------N--PEKRTIIPTEY 247 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--~~~~------~--~~~~~i~~~~~ 247 (532)
||+|+|. +||||||||+|+|||.+||++|+||++||+|+|++++..+++.... +.+. . ...+. ....+
T Consensus 1 m~~iav~-~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~ 78 (270)
T cd02040 1 MRQIAIY-GKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVELELEDV-IFEGF 78 (270)
T ss_pred CcEEEEE-eCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCchhhhcCCCCCCcHHHHHHhhcccccchhhh-eeecC
Confidence 6899999 6999999999999999999999999999999999887776553211 1110 0 11222 33446
Q ss_pred CCcEEEecCCCCCcccccCC-ch-HHHHHHHHHHhcccCCCCEEEEcCCCCCChhhh-hhhhhcCCCeEEEEeCCCcchH
Q 009574 248 LGVKLVSFGFSGQGRAIMRG-PM-VSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAF 324 (532)
Q Consensus 248 ~~l~vl~~~~~~~~~~~~~~-~~-~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~-~~~~~~~~d~viiV~~p~~~s~ 324 (532)
+|++++|++........... .. ...+++. +..+. ++|||||||||+......+ ....+.++|.+++|++|+..++
T Consensus 79 ~~l~~ip~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~-~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~sl 156 (270)
T cd02040 79 GGIKCVESGGPEPGVGCAGRGVITAINLLEE-LGAYE-DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMAL 156 (270)
T ss_pred CCeEEEeCCCCCCCCCCcCcchhhHHHHHHh-cCccc-cCCCEEEEecccCcccCCcccccccccccEEEEEecCchHHH
Confidence 79999998754322111111 10 1112333 23333 7899999999875432111 1111236899999999999999
Q ss_pred HHHHHHHHHHHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEe
Q 009574 325 IDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAA 400 (532)
Q Consensus 325 ~~~~~~i~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~ 400 (532)
.++.++++.+.+. +.++.|+|.|+.. . ..+.+..+++.+.+|.++++.||++..+.+|...|+|++++
T Consensus 157 ~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~--~------~~~~~~~~~l~~~~g~~vl~~Ip~~~~v~~A~~~g~pv~~~ 228 (270)
T cd02040 157 YAANNICKGILKYAKSGGVRLGGLICNSRN--T------DREDELIDAFAKRLGTQMIHFVPRDNVVQRAELRGKTVIEY 228 (270)
T ss_pred HHHHHHHHHHHHhCccCCCceEEEEEecCC--C------hhHHHHHHHHHHHcCCCeEeecCCcHHHHHHHHcCCceEEe
Confidence 9988887766543 5678889988732 1 12235677888899998899999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 009574 401 DPCGEVANTFQDLGVCVVQQCAK 423 (532)
Q Consensus 401 ~p~s~~a~~~~~La~~i~~~~~~ 423 (532)
.|+++++++|+++++++.++.+.
T Consensus 229 ~p~~~aa~~~~~La~el~~~~~~ 251 (270)
T cd02040 229 DPESKQADEYRELARKIVENKLL 251 (270)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999876444
No 13
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=99.97 E-value=2.2e-29 Score=252.49 Aligned_cols=224 Identities=19% Similarity=0.144 Sum_probs=165.1
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcc-cccc----------cCCCCCceeecccCC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN-RLLE----------MNPEKRTIIPTEYLG 249 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~-~~~~----------~~~~~~~i~~~~~~~ 249 (532)
|+|+ +||||||||+|+|||.+||++|+|||+||+|+|++.+..+.|... .+.. .....+.+.+ ..+|
T Consensus 3 ia~~-gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t~~l~g~~~~~i~~~~~~~~~~~~~~~~~~~i~~-~~~~ 80 (290)
T CHL00072 3 LAVY-GKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTFTLTGFLIPTIIDTLQSKDYHYEDVWPEDVIYK-GYGG 80 (290)
T ss_pred EEEE-CCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCcccccccCcCCCCHHHHHhhcccccccCChhheEEe-CCCC
Confidence 8888 599999999999999999999999999999999987766655322 1110 0112233333 3679
Q ss_pred cEEEecCCCCCcccc--cCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHH
Q 009574 250 VKLVSFGFSGQGRAI--MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDV 327 (532)
Q Consensus 250 l~vl~~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~ 327 (532)
++++|++........ ........+++.+ ... ++||||||||+++.....+ ...+.++|.+++|+.|+..++.++
T Consensus 81 l~lip~~~~~~~~~~~~~~~~~~~~ll~~l-~~~--~~yD~IiIDt~~~l~~~a~-~aal~~AD~viIp~~p~~~sl~~~ 156 (290)
T CHL00072 81 VDCVEAGGPPAGAGCGGYVVGETVKLLKEL-NAF--YEYDIILFDVLGDVVCGGF-AAPLNYADYCIIITDNGFDALFAA 156 (290)
T ss_pred eEEEeCCCCCCccchhhcccHHHHHHHHHh-hcc--ccCCEEEEecCCcceechh-hhhhhcCCEEEEEecCCHHHHHHH
Confidence 999998765432211 1111112233333 221 4799999999887543222 122557899999999999999999
Q ss_pred HHHHHHHHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEeCCC
Q 009574 328 AKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPC 403 (532)
Q Consensus 328 ~~~i~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~ 403 (532)
.++++.++.. +.+..|+|+||+.. +...+++.+.++.+++..||++..+.+|...|+|++++.|+
T Consensus 157 ~~l~~~i~~~~~~~~l~~~gvv~n~~~~-----------~~~~~~~~~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~p~ 225 (290)
T CHL00072 157 NRIAASVREKARTHPLRLAGLVGNRTSK-----------RDLIDKYVEACPMPVLEVLPLIEDIRVSRVKGKTLFEMVES 225 (290)
T ss_pred HHHHHHHHHHhccCCCceEEEEEeCCCc-----------hhHHHHHHHHcCCceEEECCCChHHHHHHhCCCceEEeCCC
Confidence 9998877654 45688999999641 13466778889988889999999999999999999999999
Q ss_pred CH----HHHHHHHHHHHHHHHH
Q 009574 404 GE----VANTFQDLGVCVVQQC 421 (532)
Q Consensus 404 s~----~a~~~~~La~~i~~~~ 421 (532)
++ ++++|.+||++|+++.
T Consensus 226 s~~~~~~a~~y~~La~ell~~~ 247 (290)
T CHL00072 226 EPSLNYVCDYYLNIADQLLSQP 247 (290)
T ss_pred CcchhHHHHHHHHHHHHHHhCC
Confidence 98 5899999999997653
No 14
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=99.97 E-value=1e-29 Score=251.92 Aligned_cols=229 Identities=24% Similarity=0.359 Sum_probs=174.8
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccc----cc----cCCCCCceee-cccC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL----LE----MNPEKRTIIP-TEYL 248 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~----~~----~~~~~~~i~~-~~~~ 248 (532)
+|+|+|+|+||||||||+|+|||..|++.|+||++||+|+++++++.++|.+... .+ .....+.+.. ...+
T Consensus 1 ~~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (261)
T TIGR01968 1 ARVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRLK 80 (261)
T ss_pred CeEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCeeEEeCCCCcCCCCHHHHhcCcCcHHHHhhcCCCCC
Confidence 4799999999999999999999999999999999999999988888888865321 10 0011112221 1346
Q ss_pred CcEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHH
Q 009574 249 GVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 328 (532)
Q Consensus 249 ~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~ 328 (532)
|++++|++..... .... ...+.++++.+. +.||||||||||+.+...... +..+|.+++|++|+..++.++.
T Consensus 81 ~l~~l~~~~~~~~-~~~~----~~~l~~~l~~l~-~~~D~viiD~p~~~~~~~~~~--l~~aD~viiv~~~~~~s~~~~~ 152 (261)
T TIGR01968 81 NLYLLPASQTRDK-DAVT----PEQMKKLVNELK-EEFDYVIIDCPAGIESGFRNA--VAPADEAIVVTTPEVSAVRDAD 152 (261)
T ss_pred CeEEEeCCCchhh-hhCC----HHHHHHHHHHHH-HhCCEEEEeCCCCcCHHHHHH--HHhCCeEEEEcCCCcHHHHHHH
Confidence 9999997653221 1111 123455555554 689999999999988654433 5678999999999999999999
Q ss_pred HHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEeCCCCHHHH
Q 009574 329 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVAN 408 (532)
Q Consensus 329 ~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~s~~a~ 408 (532)
++++.++..+....++|+|++........ .....+++.+.++.++++.||++..+.+|...|+|++++.+ +++++
T Consensus 153 ~~~~~l~~~~~~~~~iviN~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~~-s~~~~ 227 (261)
T TIGR01968 153 RVIGLLEAKGIEKIHLIVNRLRPEMVKKG----DMLSVDDVLEILSIPLIGVIPEDEAIIVSTNKGEPVVLNDK-SRAGK 227 (261)
T ss_pred HHHHHHHHcCCCceEEEEeCcCchhcccc----cccCHHHHHHHhCCceeEEccCCHHHHHHHhcCCCeecCCC-ChHHH
Confidence 99999998877678999999754321110 11236778888999999999999999999999999998765 89999
Q ss_pred HHHHHHHHHHH
Q 009574 409 TFQDLGVCVVQ 419 (532)
Q Consensus 409 ~~~~La~~i~~ 419 (532)
+|++|+++|..
T Consensus 228 ~~~~La~~l~~ 238 (261)
T TIGR01968 228 AFENIARRILG 238 (261)
T ss_pred HHHHHHHHHhc
Confidence 99999999864
No 15
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=99.97 E-value=1.3e-29 Score=248.04 Aligned_cols=232 Identities=27% Similarity=0.323 Sum_probs=182.2
Q ss_pred cceEEEEEeCcCCCcHHHHHHHH-HHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccc-------cccCCCCCceeecccC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNL-AYTLAGMGARVGIFDADVYGPSLPTMVSPENRL-------LEMNPEKRTIIPTEYL 248 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nL-A~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~-------~~~~~~~~~i~~~~~~ 248 (532)
|+++|+|+|+||||||||+++|| |..++.+|++|++||+|+..++++.++|..+.. .+.....+.+......
T Consensus 1 ~~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~ 80 (262)
T COG0455 1 MTKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQD 80 (262)
T ss_pred CCEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhCCCCHhHeeeecCcC
Confidence 57899999999999999999999 555566788889999999999999999987642 2223334555566558
Q ss_pred CcEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHH
Q 009574 249 GVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 328 (532)
Q Consensus 249 ~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~ 328 (532)
|+++||++....+...+........+.++. ..|||||||||+|++...... ...+|.+++|++|+..++.++.
T Consensus 81 gl~vipg~~~~~~~~~~~~~~~~~~~~~l~-----~~~D~iliD~~aGl~~~~~~~--~~~sd~~viVt~pe~~si~~A~ 153 (262)
T COG0455 81 GLYVLPGGSGLEDLAKLDPEDLEDVIKELE-----ELYDYILIDTGAGLSRDTLSF--ILSSDELVIVTTPEPTSITDAY 153 (262)
T ss_pred CEEEeeCCCChHHHhhcCHHHHHHHHHHHH-----hcCCEEEEeCCCCccHHHHHH--HHhcCcEEEEeCCCcchHHHHH
Confidence 999999887766665555555555555553 677999999999999776554 4566999999999999999999
Q ss_pred HHHHHHHcCCCCEEE--EEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEeCCCCHH
Q 009574 329 KGVRMFSKLKVPCIA--VVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEV 406 (532)
Q Consensus 329 ~~i~~l~~~~~~~~g--vV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~s~~ 406 (532)
.+++.+...+.+..+ +|+||+........ ......+..+++ +.+..+|+++.+.++...|.|+..+.|++++
T Consensus 154 ~~i~~~~~~~~~~~~~~vV~N~v~~~~e~~~----~~~~~~~~~~~~--~~~~~i~~~~~v~~a~~~g~p~~~~~p~s~a 227 (262)
T COG0455 154 KTIKILSKLGLDLLGRRVVLNRVRSTKEGVD----VAALLIQVVKQV--PVLQVIPFDPEVRRALAEGKPIVLYSPNSKA 227 (262)
T ss_pred HHHHHHHHcCCccccceEEEEecccccchhH----HHHHHHHHHHhC--CceeEeccChHHHHHhhcCCcEEEeCCCCHH
Confidence 999999999998888 99999862222110 001223333333 3778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 009574 407 ANTFQDLGVCVVQQC 421 (532)
Q Consensus 407 a~~~~~La~~i~~~~ 421 (532)
++++.++|..+.+..
T Consensus 228 s~ai~~lA~~l~~~~ 242 (262)
T COG0455 228 SQAIKELAAKLAGLP 242 (262)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999987643
No 16
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=99.97 E-value=7e-30 Score=257.08 Aligned_cols=233 Identities=17% Similarity=0.178 Sum_probs=168.1
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcc--ccccc--------CCCCCceeecc
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLLEM--------NPEKRTIIPTE 246 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~--~~~~~--------~~~~~~i~~~~ 246 (532)
.||+|+|. +||||||||+|+|||..||++|+|||+||+|+|++++..+++... .+.+. ....+.+....
T Consensus 3 ~~~~iai~-~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 81 (295)
T PRK13234 3 KLRQIAFY-GKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVMKIG 81 (295)
T ss_pred cceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEecccccccccccccCCCCCcHHHHHHhcCCcccccHHHHheec
Confidence 46899997 999999999999999999999999999999999999876655322 11110 11112223345
Q ss_pred cCCcEEEecCCCCCcccccCCchHHHHHH-HHHHhcc-cCCCCEEEEcCCCCCChhhh-hhhhhcCCCeEEEEeCCCcch
Q 009574 247 YLGVKLVSFGFSGQGRAIMRGPMVSGVIN-QLLTTTE-WGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLA 323 (532)
Q Consensus 247 ~~~l~vl~~~~~~~~~~~~~~~~~~~~l~-~ll~~~~-~~~yD~VIIDtpp~~~~~~~-~~~~~~~~d~viiV~~p~~~s 323 (532)
.+|+++||++...... ........++ ..++.+. .++||||||||+++.....+ ......++|.+++|++|+..+
T Consensus 82 ~~gl~lipa~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~yD~IlID~~~~~~~nal~~~~~~~aAD~vIIPv~pe~~S 158 (295)
T PRK13234 82 YKGIKCVESGGPEPGV---GCAGRGVITSINFLEENGAYDDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMA 158 (295)
T ss_pred CCCeEEEECCCCCCCC---CCCcceeeeHHHHHHHcCCCccCCEEEEEcCCCceECCCccccccccCceEEEecCccHHH
Confidence 6799999986432221 1111112222 2333321 26899999999654321111 100013789999999999999
Q ss_pred HHHHHHHHHHHHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEE
Q 009574 324 FIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVA 399 (532)
Q Consensus 324 ~~~~~~~i~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~ 399 (532)
+.++.++++.+.+. ++++.|+|+|+.+.. ..++..+++.+.++.+++..||++..+.++...|+|++.
T Consensus 159 l~gl~~l~~~i~~~~~~~~l~~~gIV~N~~rt~--------~~~~~~e~l~e~~g~~ll~~Ip~d~~V~eA~~~g~pv~~ 230 (295)
T PRK13234 159 LYAANNIAKGILKYANSGGVRLGGLICNERQTD--------RELELAEALAARLGSKLIHFVPRDNIVQHAELRRMTVIE 230 (295)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCc--------hHHHHHHHHHHHhCCceEEECCCchHHHHHHHcCCceEE
Confidence 99999998777654 466889999964311 123467788888998888899999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHHHHH
Q 009574 400 ADPCGEVANTFQDLGVCVVQQC 421 (532)
Q Consensus 400 ~~p~s~~a~~~~~La~~i~~~~ 421 (532)
+.|.++++++|.+++++++++.
T Consensus 231 ~~p~s~aa~~y~~La~ell~~~ 252 (295)
T PRK13234 231 YAPDSKQAGEYRALAEKIHANS 252 (295)
T ss_pred ECCCCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999998764
No 17
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=99.97 E-value=2.4e-29 Score=250.89 Aligned_cols=229 Identities=18% Similarity=0.163 Sum_probs=164.6
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCC-cccccc---------cC-CCCCceeec
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSP-ENRLLE---------MN-PEKRTIIPT 245 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~-~~~~~~---------~~-~~~~~i~~~ 245 (532)
|+|+|+|. +||||||||+|+|||.+||++|+|||+||+|+|++.+.++.+. ...+.+ .. ...+.+ ..
T Consensus 1 m~~iIav~-~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~~t~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~i-~~ 78 (270)
T PRK13185 1 MALVLAVY-GKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDSTFTLTGKLVPTVIDILEEVDFHSEELRPEDFV-YE 78 (270)
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcchhhhhcCCCCCcHHHHHHhccccccCCCHHHhe-ee
Confidence 67999998 7999999999999999999999999999999998766544321 111110 01 112233 33
Q ss_pred ccCCcEEEecCCCCCcccc--cCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch
Q 009574 246 EYLGVKLVSFGFSGQGRAI--MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 323 (532)
Q Consensus 246 ~~~~l~vl~~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s 323 (532)
.++|++++|++........ .........++++ .+ +++||||||||+++.....+ ...+.++|.+++|+.|+..+
T Consensus 79 ~~~~l~~ip~~~~~~~~~~~~~~~~~~~~~l~~~--~~-~~~yD~viIDt~g~~~~~~~-~~~l~~AD~viip~~~~~~s 154 (270)
T PRK13185 79 GYNGVDCVEAGGPPAGTGCGGYVVGETVKLLKEH--HL-LDDYDVILFDVLGDVVCGGF-AAPLQYADYALIVTANDFDS 154 (270)
T ss_pred CCCCcEEEECCCCCCCCCccchhHHHHHHHHHhc--Cc-cccCCEEEEecCCCcccCcc-cchhhhCcEEEEEecCchhh
Confidence 4689999998754322111 1111111223331 12 37899999999876543221 12255789999999999999
Q ss_pred HHHHHHHHHHHHc----CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEE
Q 009574 324 FIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVA 399 (532)
Q Consensus 324 ~~~~~~~i~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~ 399 (532)
+.++.++++.++. .++++.|+|+||+.. ....+++.+.++.+++..||++..+.+|...|+|+++
T Consensus 155 l~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-----------~~~~~~~~~~~g~~vl~~Ip~~~~i~~A~~~G~pv~~ 223 (270)
T PRK13185 155 IFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-----------TDLIDKFNEAVGLKVLAHVPDLDAIRRSRLKGKTLFE 223 (270)
T ss_pred HHHHHHHHHHHHhhhhccCCCceEEEEeccCh-----------HHHHHHHHHHcCCCEEEECCCCcccChHHHcCCcHhh
Confidence 9999988887653 356678999999541 1346778888998888899999999999999999999
Q ss_pred eCCCC----HHHHHHHHHHHHHHHHHH
Q 009574 400 ADPCG----EVANTFQDLGVCVVQQCA 422 (532)
Q Consensus 400 ~~p~s----~~a~~~~~La~~i~~~~~ 422 (532)
+.|++ +++++|+++++++.++..
T Consensus 224 ~~~~~~~~~~aa~~~~~la~el~~~~~ 250 (270)
T PRK13185 224 MEETDPGLEEVQNEYLRLAEQLLAGPE 250 (270)
T ss_pred hCcCCccchHHHHHHHHHHHHHHhcCC
Confidence 98864 588999999999976544
No 18
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=99.97 E-value=2.9e-29 Score=251.40 Aligned_cols=232 Identities=18% Similarity=0.167 Sum_probs=163.6
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcc-ccccc--------CCCCCceeecccC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN-RLLEM--------NPEKRTIIPTEYL 248 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~-~~~~~--------~~~~~~i~~~~~~ 248 (532)
|++|+|+ +||||||||+|+|||.+||++|+|||+||+|+|++++.++.+... .+.+. ....+.+.+ .++
T Consensus 1 ~~~i~~~-gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t~~l~~~~~~~l~d~~~~~~~~~~~~~~~i~~-~~~ 78 (279)
T PRK13230 1 MRKFCFY-GKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTRNLVGEKIPTVLDVLREKGIDNLGLEDIIYE-GFN 78 (279)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcccccccccCccCCCHHHHHHhcCCCCCCHHHheee-CCC
Confidence 6899999 799999999999999999999999999999999988776644221 11000 112233443 468
Q ss_pred CcEEEecCCCCCcccccCCch-H-HHHHHHHHHhcccCCCCEEEEcCCCCCChhhh-hhhhhcCCCeEEEEeCCCcchHH
Q 009574 249 GVKLVSFGFSGQGRAIMRGPM-V-SGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAFI 325 (532)
Q Consensus 249 ~l~vl~~~~~~~~~~~~~~~~-~-~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~-~~~~~~~~d~viiV~~p~~~s~~ 325 (532)
|++++|++............. . ...++. +..+.+.+||||||||+++.....+ ....+.++|.+++|++|+..++.
T Consensus 79 ~l~lipa~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~~si~ 157 (279)
T PRK13230 79 GIYCVESGGPEPGYGCAGRGVITAIDLLKK-LGVFEELGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPMAIY 157 (279)
T ss_pred CcEEEECCCCCCCCCcCCcchhhHHHHHHH-cCcccccCCCEEEEecCCccccCCccccccccccceEEEeccchHHHHH
Confidence 999999875432211100000 0 111222 2122235799999999775432111 11123468999999999999999
Q ss_pred HHHHHHHHHHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEeC
Q 009574 326 DVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 401 (532)
Q Consensus 326 ~~~~~i~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~ 401 (532)
++.++++.+... +.++.|++.|+-. .. ...+..+++++.++.++++.||++..+.+|...|+|+.++.
T Consensus 158 ~~~~ll~~i~~~~~~~~~~i~gIv~n~r~-~~-------~~~~~~e~l~~~~g~~vl~~Ip~~~~v~eA~~~g~pv~~~~ 229 (279)
T PRK13230 158 AANNICKGIKRFAKRGKSALGGIIYNGRS-VI-------DAPDIVEEFAKKIGTNVIGKIPMSNIITEAEIYGKTVIEYA 229 (279)
T ss_pred HHHHHHHHHHHHhhcCCCcceEEEEeccC-CC-------chhHHHHHHHHHhCCcEEEECCCChHHHHHHHcCCeEEEeC
Confidence 998887766533 5566778765311 10 01246788889999988999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 009574 402 PCGEVANTFQDLGVCVVQQ 420 (532)
Q Consensus 402 p~s~~a~~~~~La~~i~~~ 420 (532)
|.++++++|+++++++.++
T Consensus 230 p~~~~a~~y~~La~ell~~ 248 (279)
T PRK13230 230 PDSEISNIFRELAEAIYEN 248 (279)
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999875
No 19
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.97 E-value=3.7e-29 Score=246.87 Aligned_cols=205 Identities=42% Similarity=0.632 Sum_probs=167.1
Q ss_pred cCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--ccccCC---CCCceeecccCC
Q 009574 175 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEMNP---EKRTIIPTEYLG 249 (532)
Q Consensus 175 ~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--~~~~~~---~~~~i~~~~~~~ 249 (532)
.+..++|+|+|+|||+||||+|+|||.+||++|+||++||+|.++|+++.+||.++. +..... ....+......+
T Consensus 54 ~~~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 133 (265)
T COG0489 54 KGVKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKV 133 (265)
T ss_pred cccceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCCCcccccCCCccccceecCccce
Confidence 356789999999999999999999999999999999999999999999999998653 121111 112222222345
Q ss_pred cEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 009574 250 VKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 329 (532)
Q Consensus 250 l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~ 329 (532)
+++++.+. ....|++++....+.+|+..+.|+.||||||||||+.++......+.. .|.+++|++|+.....++++
T Consensus 134 lsi~~~~~---~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~i~~~~-~~g~viVt~p~~~~~~~v~k 209 (265)
T COG0489 134 LSILPLGP---VPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADATVLQRI-PDGVVIVTTPGKTALEDVKK 209 (265)
T ss_pred EEEEecCC---CCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHHHHHhcc-CCeEEEEeCCccchHHHHHH
Confidence 66666544 667788999999999999999998899999999999999887776543 46999999999999999999
Q ss_pred HHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhh
Q 009574 330 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSA 389 (532)
Q Consensus 330 ~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~ 389 (532)
+++++++.+.+++|+|.||.++.+.... .+..+.+.+.++ ++++.+|.+....+
T Consensus 210 a~~~~~~~~~~vlGvv~Nm~~~~~~~~~-----~g~~~~~~~~~~-~~~g~~p~~~~~~~ 263 (265)
T COG0489 210 AIDMLEKAGIPVLGVVENMSYFICPRCG-----EGGGEKYAERYG-PYLGSIPLDPSARE 263 (265)
T ss_pred HHHHHHhcCCceEEEEecCccCcccccC-----CCchhhHHHHhc-cccccCCCChhhhh
Confidence 9999999999999999999887764221 356778888888 88999998876554
No 20
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=99.96 E-value=3e-29 Score=249.32 Aligned_cols=234 Identities=20% Similarity=0.177 Sum_probs=169.1
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc-ccc---c--CCCCCceeecccCCc
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR-LLE---M--NPEKRTIIPTEYLGV 250 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~-~~~---~--~~~~~~i~~~~~~~l 250 (532)
.||+|+|. +||||||||+|+|||.+||+.| |||+||+|+|++.+..+++.... +.+ . ....+.+....++|+
T Consensus 1 ~~~~iav~-~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 78 (264)
T PRK13231 1 VMKKIAIY-GKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKADTTRTLCGKRIPTVLDTLKDNRKPELEDIIHEGFNGI 78 (264)
T ss_pred CceEEEEE-CCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCcccchhhhcCCccHHHHHHhhcCCCChhHhheeCCCCe
Confidence 37899999 6999999999999999999999 99999999999877666553221 110 0 011122334457899
Q ss_pred EEEecCCCCCcccc-cCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhh-hhhhcCCCeEEEEeCCCcchHHHHH
Q 009574 251 KLVSFGFSGQGRAI-MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT-LCQVVPLTAAVIVTTPQKLAFIDVA 328 (532)
Q Consensus 251 ~vl~~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~-~~~~~~~d~viiV~~p~~~s~~~~~ 328 (532)
+++|++........ .........+.+.+..+ +++||||||||++......+. .....++|.+++|++|+..++.++.
T Consensus 79 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~~~si~~~~ 157 (264)
T PRK13231 79 LCVESGGPEPGVGCAGRGVIVAMNLLENLGVF-DEDIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMSLYAAN 157 (264)
T ss_pred EEEEcCCCCCCCCCcCceeeehhhhHHhhccc-cCCCCEEEEecCCCceEccccccccccccceeEEEecCchhHHHHHH
Confidence 99997643221110 00100111122333333 378999999997754211111 1111478999999999999999999
Q ss_pred HHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEeCCCCHHHH
Q 009574 329 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVAN 408 (532)
Q Consensus 329 ~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~s~~a~ 408 (532)
++++.++..+.+..++|.|+.... ...+..+++.+.++.+++..||++..+.+|...|+|++++.|++++++
T Consensus 158 ~~~~~i~~~~~~~~~vv~~~~~~~--------~~~~~~~~l~~~~~~~vl~~I~~~~~v~~a~~~g~~v~~~~~~~~aa~ 229 (264)
T PRK13231 158 NIARGIKKLKGKLGGIICNCRGID--------NEVEIVSEFASRIGSRIIGVIPRSNLVQESELDAKTVVETFPESEQAS 229 (264)
T ss_pred HHHHHHHHcCCcceEEEEcCCCCc--------cHHHHHHHHHHHhCCCeEEeCCCCHHHHHHHHcCCceeEeCCCChHHH
Confidence 999999988777778888874311 123467888888998888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 009574 409 TFQDLGVCVVQQC 421 (532)
Q Consensus 409 ~~~~La~~i~~~~ 421 (532)
+|.+++++|.+++
T Consensus 230 ~~~~la~el~~~~ 242 (264)
T PRK13231 230 VYRKLANNIMNNT 242 (264)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999764
No 21
>PRK10037 cell division protein; Provisional
Probab=99.96 E-value=2e-29 Score=248.46 Aligned_cols=230 Identities=14% Similarity=0.164 Sum_probs=157.5
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--------ccccCCCCCceeecccCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--------LLEMNPEKRTIIPTEYLG 249 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--------~~~~~~~~~~i~~~~~~~ 249 (532)
|++|+|.|.||||||||+|+|||..||++|+||++||+|+|++ +..++|.... +.......+.+.+. .+|
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~~-~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 78 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDNL-LRLSFNVDFTHRQGWARALLDGQDWRDAGLRY-TSQ 78 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhhh-HHHHhCCCccccchHHHHHhcCCCchhhhccc-cCC
Confidence 6799999999999999999999999999999999999999974 4444554321 11111122223332 479
Q ss_pred cEEEecCCCCCcc-cccCC-chHHHHHHHHHHhccc-CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHH
Q 009574 250 VKLVSFGFSGQGR-AIMRG-PMVSGVINQLLTTTEW-GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFID 326 (532)
Q Consensus 250 l~vl~~~~~~~~~-~~~~~-~~~~~~l~~ll~~~~~-~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~ 326 (532)
+++||++...... ..... ......+...++.+.. ++||||||||||+.+..... .+.++|.+++|++|+..+.
T Consensus 79 l~iip~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iiIDtpp~~~~~~~~--al~aaD~vlvpv~~~~~~~-- 154 (250)
T PRK10037 79 LDLLPFGQLSIEEQENPQHWQTRLGDICSALQQLKASGRYQWILLDLPRGASPLTRQ--LLSLCDHSLAIVNVDANCH-- 154 (250)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhHHHHHHHHHHhcccCCCCEEEEECCCCccHHHHH--HHHhCCEEEEEcCcCHHHH--
Confidence 9999975221110 00000 0011234455555421 68999999999998865443 4678899999999987653
Q ss_pred HHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHh---CCCcE-EeccCchhhhhcccCCCceEEeCC
Q 009574 327 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQF---GIPHL-FDLPIRPTLSASGDSGMPEVAADP 402 (532)
Q Consensus 327 ~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~---g~~~l-~~IP~~~~i~~a~~~g~pv~~~~p 402 (532)
++..+........+++|++... ....+++.+.+ +.+++ ..||.+..+.+|...|+|++++.|
T Consensus 155 ----i~~~~~~~~~~~~i~~n~~~~~----------~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~a~~~g~~v~~~~~ 220 (250)
T PRK10037 155 ----IRLHQQALPAGAHILINDLRIG----------SQLQDDLYQLWLQSQRRLLPMLIHRDEAMAECLAAKQPLGEYRS 220 (250)
T ss_pred ----HhhhccccCCCeEEEEecCCcc----------cHHHHHHHHHHHHhcccccCccccCchhHHHHHhcCCcchhcCC
Confidence 3333332223456788986421 12334444443 44444 369999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhc
Q 009574 403 CGEVANTFQDLGVCVVQQCAKIRQQ 427 (532)
Q Consensus 403 ~s~~a~~~~~La~~i~~~~~~~~~~ 427 (532)
+++++++|+.+++++++.++.++..
T Consensus 221 ~s~aa~~~~~l~~el~~~~~~~~~~ 245 (250)
T PRK10037 221 DSLAAEEILTLANWCLLHYSGLKTP 245 (250)
T ss_pred cCHHHHHHHHHHHHHHHhhccCCCC
Confidence 9999999999999999988877543
No 22
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=99.96 E-value=1.2e-29 Score=265.23 Aligned_cols=239 Identities=21% Similarity=0.199 Sum_probs=171.2
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccc--------c-------ccCCCCC
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL--------L-------EMNPEKR 240 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~--------~-------~~~~~~~ 240 (532)
..|++|+|+|.||||||||+|+|||..||++|+|||+||+|+|+ ++..++|..+.. . ......+
T Consensus 119 ~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~-~lt~~~g~~~~~~~~~~~tl~~~l~~~~~~~~~~~ 197 (405)
T PRK13869 119 EHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQA-SLSALLGVLPETDVGANETLYAAIRYDDTRRPLRD 197 (405)
T ss_pred CCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCC-CHHHHcCCCccccccccccHHHHHhccccCCCHHH
Confidence 35789999999999999999999999999999999999999997 455566653211 0 0112233
Q ss_pred ceeecccCCcEEEecCCCCCcccc----------cCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCC
Q 009574 241 TIIPTEYLGVKLVSFGFSGQGRAI----------MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPL 310 (532)
Q Consensus 241 ~i~~~~~~~l~vl~~~~~~~~~~~----------~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~ 310 (532)
.+.++.++|++++|++........ .........|++.++.+. ++||||||||||+++.... ..+.++
T Consensus 198 ~i~~t~~~~ldliPa~~~l~~~e~~~~~~~~~~~~~~~~~~~~L~~~L~~~~-~~yD~IiIDtpP~l~~~t~--~al~aA 274 (405)
T PRK13869 198 VIRPTYFDGLHLVPGNLELMEFEHTTPKALSDKGTRDGLFFTRVAQAFDEVA-DDYDVVVIDCPPQLGFLTL--SGLCAA 274 (405)
T ss_pred heeccCCCCeeEecCCHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHhh-ccCCEEEEECCCchhHHHH--HHHHHc
Confidence 455677899999997643221110 011112234666776665 7899999999999986554 447789
Q ss_pred CeEEEEeCCCcchHHHHHHHHHHH-------HcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcE-
Q 009574 311 TAAVIVTTPQKLAFIDVAKGVRMF-------SKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL- 378 (532)
Q Consensus 311 d~viiV~~p~~~s~~~~~~~i~~l-------~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l- 378 (532)
|.+++|+.|+..++.++.++++++ ++. +...+++++||++... ..+++..+.+.+.||..++
T Consensus 275 d~viiPv~p~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~~~------~~~~~~~~~l~~~~~~~vl~ 348 (405)
T PRK13869 275 TSMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQD------APQTKVAALLRNMFEDHVLT 348 (405)
T ss_pred CEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECCCC------cHHHHHHHHHHHHhhhhhcc
Confidence 999999999999999888887632 222 2346799999965332 2234577888888886554
Q ss_pred EeccCchhhhhcccCCCceEEeCCCCHHHHHHHHHHHHHHHHHHHh
Q 009574 379 FDLPIRPTLSASGDSGMPEVAADPCGEVANTFQDLGVCVVQQCAKI 424 (532)
Q Consensus 379 ~~IP~~~~i~~a~~~g~pv~~~~p~s~~a~~~~~La~~i~~~~~~~ 424 (532)
..||.+..+.+|...|+|+++++|.+..++.|....+.+.+-..++
T Consensus 349 ~~I~~s~ai~~a~~~~~tv~e~~~~~~~~~~y~ra~~~~~~~~~ei 394 (405)
T PRK13869 349 NPMVKSAAVSDAGLTKQTLYEIGRENLTRSTYDRAMESLDAVNSEI 394 (405)
T ss_pred CcCcchHHHHhhHhcCCChhhcCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999988665555655555544433333
No 23
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=99.96 E-value=7.8e-29 Score=247.79 Aligned_cols=231 Identities=21% Similarity=0.230 Sum_probs=164.8
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--cc---ccC----CCCCceeecccCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LL---EMN----PEKRTIIPTEYLG 249 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--~~---~~~----~~~~~i~~~~~~~ 249 (532)
++|+|+ +||||||||+|+|||.+||++|+||++||+|+|++++..+++.... +. ... ...+.+....+.|
T Consensus 1 ~~ia~~-gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~ 79 (275)
T TIGR01287 1 RQIAIY-GKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADSTRLLLGGKAQPTVLDVLREKGAEDLELEDVIKEGFGG 79 (275)
T ss_pred CeeEEe-CCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCccccccCCCCCCCHHHHHhhcCCCCCCHHHeeeeCCCC
Confidence 479998 6999999999999999999999999999999999887766553322 11 000 1112233445689
Q ss_pred cEEEecCCCCCcccccCCchH---HHHHHHHHHhcccCCCCEEEEcCCCCCChhhh-hhhhhcCCCeEEEEeCCCcchHH
Q 009574 250 VKLVSFGFSGQGRAIMRGPMV---SGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAFI 325 (532)
Q Consensus 250 l~vl~~~~~~~~~~~~~~~~~---~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~-~~~~~~~~d~viiV~~p~~~s~~ 325 (532)
++++|++........ .+... ..+++.+ ..+. ++||||||||++......+ ......++|.+++|++|+..++.
T Consensus 80 l~~i~~~~~~~~~~~-~~~~~~~~~~~~~~l-~~l~-~~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~~sl~ 156 (275)
T TIGR01287 80 IRCVESGGPEPGVGC-AGRGVITAINLLEEL-GAYE-DDLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALY 156 (275)
T ss_pred EEEEeCCCCCccCCC-ccchhhhHHHHHHHh-hhhh-ccCCEEEEeccCcceecceeeccccccccEEEEEecchHHHHH
Confidence 999997643321110 11111 1233332 2333 6899999999765421111 11112367999999999999999
Q ss_pred HHHHHHHHHHc----CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEeC
Q 009574 326 DVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 401 (532)
Q Consensus 326 ~~~~~i~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~ 401 (532)
++.++++.+.+ .+.++.++|.|+.. . ....+..+++.+.++.++++.||++..+.+|...|+|++++.
T Consensus 157 ~~~~l~~~i~~~~~~~~~~~~giv~n~~~--~------~~~~~~~e~l~~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~ 228 (275)
T TIGR01287 157 AANNICKGILKYAKSGGVRLGGLICNSRN--V------DDEKELIDEFAKKLGTQLIHFVPRSNIVQKAEIRKMTVIEYD 228 (275)
T ss_pred HHHHHHHHHHHHHhcCCCeeeEEEEcCCC--C------chHHHHHHHHHHHhCCceEEECCCChHHHHHHHcCCceEEeC
Confidence 98887765433 35667888888732 1 112245678888899888899999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 009574 402 PCGEVANTFQDLGVCVVQQC 421 (532)
Q Consensus 402 p~s~~a~~~~~La~~i~~~~ 421 (532)
|.++++++|+++++++.++.
T Consensus 229 p~s~~a~~~~~la~ell~~~ 248 (275)
T TIGR01287 229 PESEQANEYRELAKKIYENT 248 (275)
T ss_pred CCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999998765
No 24
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=99.96 E-value=9.7e-29 Score=246.20 Aligned_cols=227 Identities=19% Similarity=0.184 Sum_probs=162.3
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCc-ccccc---------cCCCCCceeecccCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE-NRLLE---------MNPEKRTIIPTEYLG 249 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~-~~~~~---------~~~~~~~i~~~~~~~ 249 (532)
+|+|. +||||||||+|+|||.+||++|+|||+||+|+|++.+..+.+.. ..+.+ .....+.+....++|
T Consensus 2 ~i~~~-gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~ 80 (268)
T TIGR01281 2 ILAVY-GKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHDSTFTLTGRLIPTVIDVLQAVNYHYEDVRPEDVIYTGYGG 80 (268)
T ss_pred EEEEE-cCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccccccceecCCCCCcHHHHHHhccccccCCCHHHeeEeCCCC
Confidence 68888 89999999999999999999999999999999997665543321 11111 011111223344689
Q ss_pred cEEEecCCCCCccc--ccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHH
Q 009574 250 VKLVSFGFSGQGRA--IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDV 327 (532)
Q Consensus 250 l~vl~~~~~~~~~~--~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~ 327 (532)
+++||++....... ..........++++ .. .++||||||||+++....... ..+.++|.+++|+.|+..++.++
T Consensus 81 l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~--~~-~~~yD~ViID~~~~~~~~~~~-~~l~aAD~vlip~~~~~~sl~~~ 156 (268)
T TIGR01281 81 VDCVEAGGPPAGSGCGGYVVGETVKLLKEH--HI-LDDYDVILFDVLGDVVCGGFA-TPLQYADYALVVAANDFDALFAA 156 (268)
T ss_pred eEEEecCCCCCCCcccceehhhhHHHhhhc--cc-cccCCEEEEecCCccccCccc-cchhhcCEEEEEecCchhHHHHH
Confidence 99999775432211 11111112233331 12 368999999998765432211 22557899999999999999999
Q ss_pred HHHHHHHHc----CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEeCCC
Q 009574 328 AKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPC 403 (532)
Q Consensus 328 ~~~i~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~ 403 (532)
.++++.+++ .++++.|+|+||++.. +..+++.+.++.+++..||.+..+.+|...|+|++++.|+
T Consensus 157 ~~l~~~i~~~~~~~~l~~~gIV~N~~~~~-----------~~~~~~~~~~~~~vl~~I~~~~~v~~A~~~G~pV~~~~~~ 225 (268)
T TIGR01281 157 NRIAASVQEKAKNYDVRLAGIIGNRSDAT-----------DLIERFNERVGMPVLGVVPDLEVIRRSRVKGKTLFEMEES 225 (268)
T ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCChH-----------HHHHHHHHHcCCCEEEEcCCChHHHHHHHCCCCHHHhCcc
Confidence 888877664 3577889999996532 2467778889998999999999999999999999999876
Q ss_pred C----HHHHHHHHHHHHHHHHHH
Q 009574 404 G----EVANTFQDLGVCVVQQCA 422 (532)
Q Consensus 404 s----~~a~~~~~La~~i~~~~~ 422 (532)
+ +++++|+++++++.++..
T Consensus 226 ~~~~~~~a~~~~~la~el~~~~~ 248 (268)
T TIGR01281 226 GPELAAVTQEYLRMAEYLLAGPE 248 (268)
T ss_pred cccchHHHHHHHHHHHHHHhcCC
Confidence 5 467899999999876543
No 25
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.96 E-value=3.8e-28 Score=241.82 Aligned_cols=225 Identities=20% Similarity=0.175 Sum_probs=160.7
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCC-cccccc----------cCCCCCceeeccc
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSP-ENRLLE----------MNPEKRTIIPTEY 247 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~-~~~~~~----------~~~~~~~i~~~~~ 247 (532)
++|+|. +||||||||+|+|||++||++|+|||+||+|+|++....+.+. ...+.+ .....+.+ ...+
T Consensus 1 ~~i~v~-gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i-~~~~ 78 (267)
T cd02032 1 MVLAVY-GKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDSTFTLTGFLIPTVIDILEEVDFHYEELWPEDVI-YEGY 78 (267)
T ss_pred CEEEEe-cCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCcceeccCCCCCCHHHHHHhccccccCCChhheE-EECC
Confidence 378888 6999999999999999999999999999999998655444221 111111 11122333 3456
Q ss_pred CCcEEEecCCCCCccc--ccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHH
Q 009574 248 LGVKLVSFGFSGQGRA--IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI 325 (532)
Q Consensus 248 ~~l~vl~~~~~~~~~~--~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~ 325 (532)
+|++++|++....... .........+++++ . . .++||||||||+++....... ..+.++|.+++|+.|+..++.
T Consensus 79 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~yD~vIIDt~g~~~~~~~~-~al~~aD~vlip~~p~~~~l~ 154 (267)
T cd02032 79 GGVDCVEAGGPPAGAGCGGYVVGETVKLLKEL-N-L-FEEYDVILFDVLGDVVCGGFA-APLNYADYALIVTDNDFDSIF 154 (267)
T ss_pred CCcEEEEcCCCCCCccccchHHHHHHHHHHHc-c-c-cccCCEEEEeCCCCcccccch-hhhhhcCEEEEEecCCcccHH
Confidence 8999999875432211 11011111233331 1 2 368999999998876533211 125578999999999999999
Q ss_pred HHHHHHHHHHc----CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEeC
Q 009574 326 DVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 401 (532)
Q Consensus 326 ~~~~~i~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~ 401 (532)
++.++++.++. .++++.|+|+||++.. ...+++.+.++.+++..||++..+.+|...|+|++++.
T Consensus 155 ~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~~-----------~~i~~~~~~~~~~vl~~Ip~~~~v~~A~~~G~~v~e~~ 223 (267)
T cd02032 155 AANRIAAAVREKAKTYKVRLAGLIANRTDKT-----------DLIDKFVEAVGMPVLAVLPLIEDIRRSRVKGKTLFEMD 223 (267)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEEeCCCHH-----------HHHHHHHHhCCCCEEEEecCCccccHHHHcCCCHHHhC
Confidence 99988877663 3567789999996521 24567778889888999999999999999999999999
Q ss_pred CCCHH----HHHHHHHHHHHHHH
Q 009574 402 PCGEV----ANTFQDLGVCVVQQ 420 (532)
Q Consensus 402 p~s~~----a~~~~~La~~i~~~ 420 (532)
|.++. +++|++|+++++++
T Consensus 224 ~~~~~a~e~a~~y~~La~~il~~ 246 (267)
T cd02032 224 ESDEELAYRCDYYLLIADQLLAG 246 (267)
T ss_pred cccccccHHHHHHHHHHHHHHhc
Confidence 88765 67899999988753
No 26
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.96 E-value=3.2e-28 Score=233.59 Aligned_cols=229 Identities=20% Similarity=0.214 Sum_probs=169.1
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccccc--------ccCCCCCceeecccCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL--------EMNPEKRTIIPTEYLG 249 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~--------~~~~~~~~i~~~~~~~ 249 (532)
|++|+|.|.||||||||+|+|||..|++.|++|++||+||++ .+...||.+.... ......+.. ....+|
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN-~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~-~~~~~g 78 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQN-LLRLHFGLPLDDRDGWARALLDGADWQQAA-YRYSDG 78 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHH-HHHHhcCCCCcccccHHHHHhCCCCHHHHh-hccCCC
Confidence 789999999999999999999999999999999999999986 7777777664311 111111222 223479
Q ss_pred cEEEecCCCCCcccc-c--CCchHHHHHHHHHHhcc-cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHH
Q 009574 250 VKLVSFGFSGQGRAI-M--RGPMVSGVINQLLTTTE-WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI 325 (532)
Q Consensus 250 l~vl~~~~~~~~~~~-~--~~~~~~~~l~~ll~~~~-~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~ 325 (532)
++++|.|........ + .... ...+.+.+..+. ...||+||||||||.+.....+ +..+|.+++|+.|+..+..
T Consensus 79 ~~~LPfG~l~~~~~~~~~~l~~~-~~~l~~~l~~l~~~~~~~~iliD~P~g~~~~~~~a--l~~aD~vL~V~~~Da~s~~ 155 (243)
T PF06564_consen 79 VDFLPFGQLTEAEREAFEQLAQD-PQWLARALAALKALGPYDWILIDTPPGPSPYTRQA--LAAADLVLVVVNPDAASHA 155 (243)
T ss_pred CEEEcCCCCCHHHHHHHHHhhcC-HHHHHHHHHHHhccCCCCEEEEeCCCCCcHHHHHH--HHhCCeEEEEeCCCHHHHH
Confidence 999998865432211 0 0111 122333333333 4789999999999988665544 5578999999999999876
Q ss_pred HHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEeCCCCH
Q 009574 326 DVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGE 405 (532)
Q Consensus 326 ~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~s~ 405 (532)
.+.+. ... .-..+|+|+++... .++++..+-+++..+..+...|+.|+.+.||...++|+.+|+|.|.
T Consensus 156 ~L~q~-----~l~-~~~~~liNq~~~~s------~l~~D~~~~~~~~l~~llp~~IHrDeAv~EAlA~~~~v~~yaP~S~ 223 (243)
T PF06564_consen 156 RLHQR-----ALP-AGHRFLINQYDPAS------QLQRDLLQVWRQSLGRLLPGVIHRDEAVAEALASGQPVGEYAPHSQ 223 (243)
T ss_pred HHHHh-----ccc-CCcEEEEeccCccc------hHHHHHHHHHHHhhccccceeeecchHHHHHHhcCCCccccCccCH
Confidence 65441 111 12588999955433 3456677777777886667889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009574 406 VANTFQDLGVCVVQQCAK 423 (532)
Q Consensus 406 ~a~~~~~La~~i~~~~~~ 423 (532)
++++|..||.+++.++..
T Consensus 224 Aa~D~~~LA~W~l~~~~~ 241 (243)
T PF06564_consen 224 AAEDIQTLANWCLSHLAG 241 (243)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999977653
No 27
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.96 E-value=8.7e-28 Score=222.64 Aligned_cols=167 Identities=57% Similarity=0.993 Sum_probs=133.8
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCCCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 259 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~ 259 (532)
+|+|+|+|||+||||+|+|||.+||+.|+||++||+|+|++++.+++
T Consensus 1 vi~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~--------------------------------- 47 (169)
T cd02037 1 VIAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMW--------------------------------- 47 (169)
T ss_pred CEEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHH---------------------------------
Confidence 58999999999999999999999999999999999999997654430
Q ss_pred CcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCC
Q 009574 260 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKV 339 (532)
Q Consensus 260 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~ 339 (532)
+++.....++.+++...+.+||||||||||+.++.......+..+|.+++|++|+..++.++.++++.+++.+.
T Consensus 48 ------~~~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~ 121 (169)
T cd02037 48 ------RGPMKMGAIKQFLTDVDWGELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNI 121 (169)
T ss_pred ------hCcchHHHHHHHHHHhhcCCCCEEEEeCCCCCcHHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCC
Confidence 01111234555555544479999999999998876554432357899999999999999999999999999999
Q ss_pred CEEEEEEecccccC--CCccccccCCchHHHHHHHhCCCcEEeccCch
Q 009574 340 PCIAVVENMCHFDA--DGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 385 (532)
Q Consensus 340 ~~~gvV~N~~~~~~--~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~ 385 (532)
++.|+|+||+.... +.+....+.....+++.+.++.++++.||+++
T Consensus 122 ~~~gvv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~ 169 (169)
T cd02037 122 PILGVVENMSYFVCPHCGKKIYIFGKGGGEKLAEELGVPLLGKIPLDP 169 (169)
T ss_pred CeEEEEEcCCcccCCCCCCcccccCCccHHHHHHHcCCCEEEeccCCC
Confidence 99999999987532 23333344556889999999999999999874
No 28
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=99.96 E-value=5.9e-28 Score=252.51 Aligned_cols=236 Identities=21% Similarity=0.217 Sum_probs=167.4
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccc--------c-------ccCCCCC
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL--------L-------EMNPEKR 240 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~--------~-------~~~~~~~ 240 (532)
..+++|+|+|.||||||||+|+|||.+||++|+|||+||+|+|+ ++..++|..+.. . ......+
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~-~ls~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 180 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQA-SLSALFGYQPEFDVGENETLYGAIRYDDERRPLSE 180 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCC-CHHHHcCCCcccccccCccHHHHHhccccccCHHh
Confidence 45789999999999999999999999999999999999999987 556666653321 0 0112234
Q ss_pred ceeecccCCcEEEecCCCCCcccc------cC----CchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCC
Q 009574 241 TIIPTEYLGVKLVSFGFSGQGRAI------MR----GPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPL 310 (532)
Q Consensus 241 ~i~~~~~~~l~vl~~~~~~~~~~~------~~----~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~ 310 (532)
.+.++.++|++++|++........ .. .......+.+.++.+. +.||||||||||+++..... .+.++
T Consensus 181 ~i~~~~~~~l~lip~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~~~~~--al~aa 257 (387)
T TIGR03453 181 IIRKTYFPGLDLVPGNLELMEFEHETPRALSRGQGGDTIFFARVGEALAEVE-DDYDVVVIDCPPQLGFLTLS--ALCAA 257 (387)
T ss_pred hcccCCCCCeEEEeCCHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH-hcCCEEEEeCCccHhHHHHH--HHHHc
Confidence 455566789999997643211100 00 1111234666666654 79999999999998865444 47788
Q ss_pred CeEEEEeCCCcchHHHHHHHHHH-------HHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcE-
Q 009574 311 TAAVIVTTPQKLAFIDVAKGVRM-------FSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL- 378 (532)
Q Consensus 311 d~viiV~~p~~~s~~~~~~~i~~-------l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l- 378 (532)
|.+++|+.|+..++..+..+++. ++.. +...+++++|++.... ...++..+.+.+.+|..++
T Consensus 258 d~viipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~------~~~~~~~~~l~~~~~~~vl~ 331 (387)
T TIGR03453 258 TGVLITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYEPND------GPQAQMVAFLRSLFGDHVLT 331 (387)
T ss_pred CeeEEcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeECCCC------ccHHHHHHHHHHHhcccccc
Confidence 99999999999888776655443 3332 2446899999965332 1234566778888886655
Q ss_pred EeccCchhhhhcccCCCceEEeCCCCHHHHHHHHHHHHHHHHH
Q 009574 379 FDLPIRPTLSASGDSGMPEVAADPCGEVANTFQDLGVCVVQQC 421 (532)
Q Consensus 379 ~~IP~~~~i~~a~~~g~pv~~~~p~s~~a~~~~~La~~i~~~~ 421 (532)
..||.+..+.+|...|.|++++.|.+..++.|....+++.+-.
T Consensus 332 ~~I~~~~~~~~a~~~g~~V~e~~~~~~~~~~~~~a~~~~~~~~ 374 (387)
T TIGR03453 332 NPMLKSTAISDAGLTKQTLYEVERSQFTRSTYDRAMESLDAVN 374 (387)
T ss_pred ccccccHHHHhhhhcCCCcEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4699999999999999999999988765666666665555433
No 29
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.95 E-value=3.7e-28 Score=240.82 Aligned_cols=237 Identities=22% Similarity=0.316 Sum_probs=171.0
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHH-HCCCcEEEEEcCCCCCCCCCCCCCccc----cc---ccC-C--CCCceeec
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGPSLPTMVSPENR----LL---EMN-P--EKRTIIPT 245 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA-~~G~rVllID~D~~~~s~~~~lg~~~~----~~---~~~-~--~~~~i~~~ 245 (532)
||++|+|+|.||||||||+|+|||.+|| ..|+|||+||+|+|+ ++..++|.... .. ... . .......
T Consensus 1 ~~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~-s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (259)
T COG1192 1 MMKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQG-SLTSWLGLRPDLEGDLYNLLSGLKERPDILDYTV- 78 (259)
T ss_pred CCEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcc-hhhHhcCCCcccchhHHHHHhcccccccchhccc-
Confidence 5889999999999999999999999999 566999999999996 45555555432 11 100 1 1111122
Q ss_pred ccCCcEEEecCCCCCc-cc-ccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch
Q 009574 246 EYLGVKLVSFGFSGQG-RA-IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 323 (532)
Q Consensus 246 ~~~~l~vl~~~~~~~~-~~-~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s 323 (532)
..++++++|+.....+ .. ..........++.++..+ .++||||||||||+.+....+ .+.++|.+++++.|+..+
T Consensus 79 ~~~~ld~ips~~~l~~~~~~~~~~~~~~~~l~~~~~~~-~~~yD~iiID~pp~l~~l~~n--al~asd~vlIP~~~~~~~ 155 (259)
T COG1192 79 VIEGLDLIPSNIDLAEGAEIELNAVAKELLLKRLLDPV-KDDYDYIIIDTPPSLGVLTLN--ALAAADHVLIPVQPEFLD 155 (259)
T ss_pred CCCCceEecCChHHHhHHHHHHhhhhHHHHHHHHhhhh-ccCCCEEEECCCCchhHHHHH--HHHHcCeeEEecCchHHH
Confidence 4578999997644321 00 000112233455555433 379999999999999765544 477889999999999999
Q ss_pred HHHHHHHHHHHHcCC------CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCc-EEeccCchhhhhcccCCCc
Q 009574 324 FIDVAKGVRMFSKLK------VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPH-LFDLPIRPTLSASGDSGMP 396 (532)
Q Consensus 324 ~~~~~~~i~~l~~~~------~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~-l~~IP~~~~i~~a~~~g~p 396 (532)
+.++..+++.+.... ....++++|+...... ...+..+.+.+.++.+. ...||.+..++++...|.|
T Consensus 156 ~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~g~~ 229 (259)
T COG1192 156 LEGLEQLLNTLEDLLKLRRNKLIVVGILITRFDSRTK------LADEVLQELKQLLGDPVLKTKIPRRVAYREAAAEGKP 229 (259)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcceEEEeeceEcCCcc------hHHHHHHHHHHHhccccccccCcccccHHhHHHcCCC
Confidence 999888777665432 2568899999553331 23356677777776443 4569999999999999999
Q ss_pred eEEeCCCCHHHHHHHHHHHHHHHHHHHh
Q 009574 397 EVAADPCGEVANTFQDLGVCVVQQCAKI 424 (532)
Q Consensus 397 v~~~~p~s~~a~~~~~La~~i~~~~~~~ 424 (532)
+..++++++.+++|.+++.++++++...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 257 (259)
T COG1192 230 LYEYDPKSKAAEEYYELAKELLEELLKL 257 (259)
T ss_pred ceecCCcchHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999887643
No 30
>PHA02518 ParA-like protein; Provisional
Probab=99.95 E-value=1.2e-27 Score=229.49 Aligned_cols=204 Identities=22% Similarity=0.281 Sum_probs=149.1
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 258 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~ 258 (532)
++|+|+|.||||||||+|+|||.+|+++|+||++||+|+|++...|+ +... . +..+++...
T Consensus 1 ~ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~~-~~~~-------~----------~~~~i~~~~- 61 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWA-EARE-------E----------GEPLIPVVR- 61 (211)
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHHH-Hhcc-------c----------CCCCCchhh-
Confidence 48999999999999999999999999999999999999999766543 1100 0 001122110
Q ss_pred CCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC-
Q 009574 259 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL- 337 (532)
Q Consensus 259 ~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~- 337 (532)
.+ ..+.+.+..+. ..||||||||||+.+...... +.++|.+++|+.|+..++..+.++++.++..
T Consensus 62 -------~~----~~~~~~l~~~~-~~~d~viiD~p~~~~~~~~~~--l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~ 127 (211)
T PHA02518 62 -------MG----KSIRADLPKVA-SGYDYVVVDGAPQDSELARAA--LRIADMVLIPVQPSPFDIWAAPDLVELIKARQ 127 (211)
T ss_pred -------cc----HHHHHHHHHHh-ccCCEEEEeCCCCccHHHHHH--HHHCCEEEEEeCCChhhHHHHHHHHHHHHHHH
Confidence 01 12333333333 789999999999987665444 6688999999999999999888888777643
Q ss_pred ----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEe-ccCchhhhhcccCCCceEEeCCCCHHHHHHHH
Q 009574 338 ----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD-LPIRPTLSASGDSGMPEVAADPCGEVANTFQD 412 (532)
Q Consensus 338 ----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~-IP~~~~i~~a~~~g~pv~~~~p~s~~a~~~~~ 412 (532)
+.+..++|.|+...... ..+ ...+..+.++.+++.. ++.+..+.++...|+|+.++.|.++++++|.+
T Consensus 128 ~~~~~~~~~~iv~n~~~~~~~------~~~-~~~~~l~~~~~~~~~~~i~~~~~~~~a~~~g~~v~~~~~~~~a~~~~~~ 200 (211)
T PHA02518 128 EVTDGLPKFAFIISRAIKNTQ------LYR-EARKALAGYGLPILRNGTTQRVAYADAAEAGGSVLELPEDDKAAEEIIQ 200 (211)
T ss_pred hhCCCCceEEEEEeccCCcch------HHH-HHHHHHHHcCchhhhchhhhHHHHHHHHhcCCceEecCCCchHHHHHHH
Confidence 46677899998532221 111 2333344557666655 55667899999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 009574 413 LGVCVVQQCA 422 (532)
Q Consensus 413 La~~i~~~~~ 422 (532)
+++++.+++.
T Consensus 201 l~~ei~~~~~ 210 (211)
T PHA02518 201 LVKELFRGIS 210 (211)
T ss_pred HHHHHHHHhc
Confidence 9999987653
No 31
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.95 E-value=2.8e-27 Score=245.85 Aligned_cols=220 Identities=18% Similarity=0.179 Sum_probs=156.2
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc-CCCCCCCCCCCCCcccc--------c----c-cCCCCCc
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA-DVYGPSLPTMVSPENRL--------L----E-MNPEKRT 241 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~-D~~~~s~~~~lg~~~~~--------~----~-~~~~~~~ 241 (532)
.++++|+|+|.||||||||+|+|||..||++|+|||+||+ |+|++.+ .++|..+.. . . .......
T Consensus 104 ~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~nlt-~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~ 182 (388)
T PRK13705 104 VFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTAS-MYHGWVPDLHIHAEDTLLPFYLGEKDDATYA 182 (388)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCchh-hhcCcCccccccccccHHHHHhcCCCchhhh
Confidence 4578999999999999999999999999999999999996 9999654 455543211 0 0 0112334
Q ss_pred eeecccCCcEEEecCCCCCccc--c---c-CC---chHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCe
Q 009574 242 IIPTEYLGVKLVSFGFSGQGRA--I---M-RG---PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTA 312 (532)
Q Consensus 242 i~~~~~~~l~vl~~~~~~~~~~--~---~-~~---~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~ 312 (532)
+.++.++|+++||++....... . . .+ ......++..++.+. ++||||||||||+++....+ .+.++|.
T Consensus 183 i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~l~~l~-~~YD~IiIDtpP~l~~~t~n--al~AaD~ 259 (388)
T PRK13705 183 IKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVA-HDYDVIVIDSAPNLGIGTIN--VVCAADV 259 (388)
T ss_pred eecCCCCCEEEEeCCHHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhh-ccCCEEEEECCCchhHHHHH--HHHHcCE
Confidence 5666789999999764321110 0 0 00 112345666666664 78999999999999866554 4678899
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHcC-------C-CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcE-EeccC
Q 009574 313 AVIVTTPQKLAFIDVAKGVRMFSKL-------K-VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPI 383 (532)
Q Consensus 313 viiV~~p~~~s~~~~~~~i~~l~~~-------~-~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l-~~IP~ 383 (532)
+++|+.|+..++.++.++++++... + .+.+.+++|+++..... ......+.+.+.||..++ ..||.
T Consensus 260 viiP~~~~~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~~~~-----~~~~~~~~l~~~~~~~vl~~~I~~ 334 (388)
T PRK13705 260 LIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNSNGS-----QSPWMEEQIRDAWGSMVLKNVVRE 334 (388)
T ss_pred EEEecCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecCCCch-----HHHHHHHHHHHHhccccccccCcc
Confidence 9999999999998888777666532 1 13356899995432111 111245678888886544 45899
Q ss_pred chhhhhcccCCCceEEeCCCC
Q 009574 384 RPTLSASGDSGMPEVAADPCG 404 (532)
Q Consensus 384 ~~~i~~a~~~g~pv~~~~p~s 404 (532)
+..+.+|...+++++++.+.+
T Consensus 335 s~~i~~a~~~~~ti~e~~~~~ 355 (388)
T PRK13705 335 TDEVGKGQIRMRTVFEQAIDQ 355 (388)
T ss_pred cchHhhhhhcCCCceeEcccc
Confidence 999999999999999998643
No 32
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.95 E-value=1.2e-26 Score=216.43 Aligned_cols=179 Identities=30% Similarity=0.487 Sum_probs=144.3
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCCCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 259 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~ 259 (532)
+|+|+|+|||+||||+|+|||.+|+++|+||++||+|++++++..+++.+... .. +
T Consensus 1 ~i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~-------------~~-~---------- 56 (179)
T cd02036 1 VIVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRV-------------VY-T---------- 56 (179)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccC-------------Cc-c----------
Confidence 58999999999999999999999999999999999999988877765543210 00 0
Q ss_pred CcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCC
Q 009574 260 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKV 339 (532)
Q Consensus 260 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~ 339 (532)
+.+++ . + |||||||||+.+...... +..+|.+++|+.|+..++.++.++++.++..+.
T Consensus 57 --------------~~~~~---~-~--d~viiD~p~~~~~~~~~~--l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~ 114 (179)
T cd02036 57 --------------LHDVL---A-G--DYILIDSPAGIERGFITA--IAPADEALLVTTPEISSLRDADRVKGLLEALGI 114 (179)
T ss_pred --------------hhhcc---c-C--CEEEEECCCCCcHHHHHH--HHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCC
Confidence 00000 0 1 999999999987654433 567899999999999999999999999998888
Q ss_pred CEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEeCCCCHHHHHH
Q 009574 340 PCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANTF 410 (532)
Q Consensus 340 ~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~s~~a~~~ 410 (532)
+..++|+|+++..... ..+..+++.+.++.+++..||++..+.++...|+|++++.|.++++++|
T Consensus 115 ~~~~iv~N~~~~~~~~------~~~~~~~~~~~~~~~v~~~Ip~~~~~~~a~~~G~~v~~~~~~~~~~~~~ 179 (179)
T cd02036 115 KVVGVIVNRVRPDMVE------GGDMVEDIEEILGVPLLGVIPEDPAVIRATNRGEPVVLNKPKSPAAQAY 179 (179)
T ss_pred ceEEEEEeCCcccccc------hhhHHHHHHHHhCCCEEEEecCCHHHHHHHhcCCceEecCCCChhhhcC
Confidence 8899999997644321 1234577888899999999999999999999999999999999887654
No 33
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.95 E-value=8e-27 Score=241.95 Aligned_cols=235 Identities=18% Similarity=0.199 Sum_probs=163.9
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc-CCCCCCCCCCCCCccccc--------c---c--CCCCCc
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA-DVYGPSLPTMVSPENRLL--------E---M--NPEKRT 241 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~-D~~~~s~~~~lg~~~~~~--------~---~--~~~~~~ 241 (532)
+.++||+|+|.||||||||+|+|||..||++|+|||+||+ |+|++.+ .++|..+... . . ......
T Consensus 104 ~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~nlt-~~~g~~~~~~~~~~~tl~~~~~~~~~~~~~~ 182 (387)
T PHA02519 104 KNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGTAS-MYHGYVPDLHIHADDTLLPFYLGERDNAEYA 182 (387)
T ss_pred CCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCcc-cccCcCccccccccccHHHHHhCCCcchHhh
Confidence 4578999999999999999999999999999999999996 9999644 5566533210 0 0 112345
Q ss_pred eeecccCCcEEEecCCCCCcc--cc---c-CC---chHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCe
Q 009574 242 IIPTEYLGVKLVSFGFSGQGR--AI---M-RG---PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTA 312 (532)
Q Consensus 242 i~~~~~~~l~vl~~~~~~~~~--~~---~-~~---~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~ 312 (532)
+.++.++|+++||++...... .. . .+ ......++..++.+. ++||||||||||+++....+ ++.++|.
T Consensus 183 i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~L~~l~-~~YD~IlID~pPslg~lt~n--AL~AAd~ 259 (387)
T PHA02519 183 IKPTCWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIESVW-DNYDIIVIDSAPNLGTGTIN--VVCAADV 259 (387)
T ss_pred eecCCCCCEEEEECChHHHHHHHHHHHhhhccccccCHHHHHHHHHHHhh-ccCCEEEEECCCCccHHHHH--HHHHhCE
Confidence 566778999999986432111 00 0 00 112345666676665 89999999999999976544 4778899
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHcC-------C-CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcE-EeccC
Q 009574 313 AVIVTTPQKLAFIDVAKGVRMFSKL-------K-VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPI 383 (532)
Q Consensus 313 viiV~~p~~~s~~~~~~~i~~l~~~-------~-~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l-~~IP~ 383 (532)
+++|+.|+..++.++.++++++... + .+.+.+++||++... .. ..+...+.+.+.||..++ ..||.
T Consensus 260 vliPv~~~~~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~~-~~----~~~~i~~~l~~~~g~~vl~~~I~~ 334 (387)
T PHA02519 260 IVVATPAELFDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYSLTV-GN----QSRWMEEQIRNTWGSMVLRQVVRV 334 (387)
T ss_pred EEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeeECCCC-ch----HHHHHHHHHHHHhccccccccCcC
Confidence 9999999999998877766655321 1 234668999954321 11 112356778889986554 45888
Q ss_pred chhhhhcccCCCceEEeCCCC-H-------HHHHHHHHHHHHHH
Q 009574 384 RPTLSASGDSGMPEVAADPCG-E-------VANTFQDLGVCVVQ 419 (532)
Q Consensus 384 ~~~i~~a~~~g~pv~~~~p~s-~-------~a~~~~~La~~i~~ 419 (532)
...+.+|...+++++++++.+ . +.+.+..+..+|.+
T Consensus 335 s~~i~~a~~~~~ti~e~~~~~~~~~~~~~r~~~~~~~~~~ei~~ 378 (387)
T PHA02519 335 TDEVGKGQIKMRTVFEQAANQRSTLNAWRNAVAIWEPVCAEIFN 378 (387)
T ss_pred cchHhhchhcCCChhhCccccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999998665 2 33444455555544
No 34
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=99.94 E-value=4.1e-26 Score=233.19 Aligned_cols=219 Identities=20% Similarity=0.234 Sum_probs=167.2
Q ss_pred cCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--cc--ccC----CCC----Cce
Q 009574 175 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LL--EMN----PEK----RTI 242 (532)
Q Consensus 175 ~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--~~--~~~----~~~----~~i 242 (532)
...+++|+|+|+||||||||+|+|||.+|+++|+||++||+|+|+++++.+||.+.. +. ... ... ...
T Consensus 90 ~~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~~ 169 (322)
T TIGR03815 90 PARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQARGRLPAGALRDA 169 (322)
T ss_pred CCCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhcCCCcCHHHHHHh
Confidence 346899999999999999999999999999999999999999999999888887542 11 000 000 011
Q ss_pred eecccCCcEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc
Q 009574 243 IPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL 322 (532)
Q Consensus 243 ~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~ 322 (532)
.+. .+|+++++.+.... ... ....++++++.+. +.||||||||||+.+...... +..+|.+++|+.|+..
T Consensus 170 ~~~-~~~l~vl~~~~~~~--~~~----~~~~l~~~l~~l~-~~~D~VIID~p~~~~~~~~~~--L~~AD~vliV~~~~~~ 239 (322)
T TIGR03815 170 LPR-RGGLSVLSWGRAVG--AAL----PPAAVRAVLDAAR-RGGDLVVVDLPRRLTPAAETA--LESADLVLVVVPADVR 239 (322)
T ss_pred CCC-cCCeEEEecCCCCc--CCC----CHHHHHHHHHHHH-hcCCEEEEeCCCCCCHHHHHH--HHHCCEEEEEcCCcHH
Confidence 222 46899999775431 111 1334556665554 799999999999988664443 6678999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEeCC
Q 009574 323 AFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADP 402 (532)
Q Consensus 323 s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p 402 (532)
++..+.++++.+...+. .+++|+|+... .....+++++.+|.+++..||++..+.++.+.|+|+. ..+
T Consensus 240 sl~~a~r~l~~l~~~~~-~~~lVv~~~~~----------~~~~~~~i~~~lg~~v~~~Ip~d~~v~~a~~~G~~~~-~~~ 307 (322)
T TIGR03815 240 AVAAAARVCPELGRRNP-DLRLVVRGPAP----------AGLDPEEIAESLGLPLLGEVRDQRGLARALERGGLPA-ASR 307 (322)
T ss_pred HHHHHHHHHHHHhhhCC-CeEEEEeCCCC----------CCCCHHHHHHHhCCCceeeCCCChhHHHHHhCCCCcC-CCC
Confidence 99999999999987654 35777776321 1124678899999999999999999999999999988 777
Q ss_pred CCHHHHHHHHHHH
Q 009574 403 CGEVANTFQDLGV 415 (532)
Q Consensus 403 ~s~~a~~~~~La~ 415 (532)
.++.++++..+.+
T Consensus 308 ~~~~~~~~~~~l~ 320 (322)
T TIGR03815 308 RRPLGRAAAEVLD 320 (322)
T ss_pred CCHHHHHHHHHHh
Confidence 8888888777654
No 35
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.94 E-value=4.4e-26 Score=219.10 Aligned_cols=194 Identities=22% Similarity=0.199 Sum_probs=136.0
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--ccc--------cCCCCCceeecccC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLE--------MNPEKRTIIPTEYL 248 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--~~~--------~~~~~~~i~~~~~~ 248 (532)
++|+|+ +||||||||+|+|||.+||++|+|||+||+|+|++++..+++.+.. +.+ .....+.+....++
T Consensus 1 ~~iav~-gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (212)
T cd02117 1 RQIAIY-GKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGFG 79 (212)
T ss_pred CEEEEE-CCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCccccccCCCCCCCHHHHHhhhCCcCCcChhHeeEeCCC
Confidence 479999 5999999999999999999999999999999999887777654321 110 01111223344568
Q ss_pred CcEEEecCCCCCcccc-cCCch-HHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhc--CCCeEEEEeCCCcchH
Q 009574 249 GVKLVSFGFSGQGRAI-MRGPM-VSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVV--PLTAAVIVTTPQKLAF 324 (532)
Q Consensus 249 ~l~vl~~~~~~~~~~~-~~~~~-~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~--~~d~viiV~~p~~~s~ 324 (532)
|++++|++........ ..+.. ....++ .+..+ +++||||||||++....... ...+. ++|.+++|++|+..++
T Consensus 80 ~l~vlp~~~~~~~~~~~~~~~~~~~~~l~-~l~~~-~~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~sl 156 (212)
T cd02117 80 GVKCVESGGPEPGVGCAGRGVITAVNLLE-KEGFA-EDDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFMAL 156 (212)
T ss_pred CcEEEeCCCCCCCcccCCcchhhHHHHHH-hcccc-ccCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHHHH
Confidence 9999998765433221 11111 112233 34333 37999999999765431111 11133 6899999999999999
Q ss_pred HHHHHHHHHHHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCc
Q 009574 325 IDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIR 384 (532)
Q Consensus 325 ~~~~~~i~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~ 384 (532)
.++.++++.++.. +.++.|+|+||+..+ .+.+..+++.+.++.++++.||++
T Consensus 157 ~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~--------~~~~~~~~~~~~~~~~vl~~IP~d 212 (212)
T cd02117 157 YAANNICKGIRKYAKSGGVRLGGLICNSRNTD--------RETELIDAFAERLGTQVIHFVPRD 212 (212)
T ss_pred HHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc--------cHHHHHHHHHHHcCCCEEEecCCC
Confidence 9998888877765 556889999997643 123467899999999999999975
No 36
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.94 E-value=6.1e-25 Score=221.74 Aligned_cols=227 Identities=23% Similarity=0.319 Sum_probs=164.0
Q ss_pred cCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--ccccCC----CC-----Ccee
Q 009574 175 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEMNP----EK-----RTII 243 (532)
Q Consensus 175 ~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--~~~~~~----~~-----~~i~ 243 (532)
.+..++|+|+ +|||+||||+++|||.+||++|+||++||+|++++++..+||.... +.+... .. ..+.
T Consensus 28 ~~~~~ii~v~-gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~dv~ 106 (329)
T cd02033 28 TKKTQIIAIY-GKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGDVC 106 (329)
T ss_pred CCCCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccccchhccccCCCcccccccccccCcccceeeceE
Confidence 3457899998 6999999999999999999999999999999999999999885432 111100 00 1111
Q ss_pred ecccCCcEEEecCCCCCcccccCCchHHHHHH--HHHHh---cccCCCCEEEEcCCCCCC--hhhhhhhhhcCCCeEEEE
Q 009574 244 PTEYLGVKLVSFGFSGQGRAIMRGPMVSGVIN--QLLTT---TEWGELDYLVIDMPPGTG--DIQLTLCQVVPLTAAVIV 316 (532)
Q Consensus 244 ~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~--~ll~~---~~~~~yD~VIIDtpp~~~--~~~~~~~~~~~~d~viiV 316 (532)
. ...|++++..+. ...+++......+. ++++. ..| +||||||||+++.. ...+..+ ...++.+++|
T Consensus 107 ~-~~~gv~~~~~g~----p~~~~G~~~~~~i~~~~~l~~l~~~~w-~~DyVliD~~gdv~~ggf~l~i~-~~~ad~VIVV 179 (329)
T cd02033 107 F-KRDGVFAMELGG----PEVGRGCGGRGIIHGFELLEKLGFHDW-DFDYVLLDFLGDVVCGGFGLPIA-RDMAQKVIVV 179 (329)
T ss_pred E-EeCCEEEecCCC----CeecccccchHHHHHHHHHHHccCccc-cCCEEEEecCCcceeccccchhh-hcCCceEEEe
Confidence 1 235777765332 23445544332222 34443 356 89999999976542 1112222 1246789999
Q ss_pred eCCCcchHHH---HHHHHHHHHcCC--CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcc
Q 009574 317 TTPQKLAFID---VAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASG 391 (532)
Q Consensus 317 ~~p~~~s~~~---~~~~i~~l~~~~--~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~ 391 (532)
++|+..++.+ +.+.++++++.+ .+++|+|+||+.. .+..+++++.+++++++.||+++.+.++.
T Consensus 180 t~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~-----------~~~ie~~ae~lgi~vLg~IP~D~~V~~a~ 248 (329)
T cd02033 180 GSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDG-----------TGEAQAFAAHAGIPILAAIPADEELRRKS 248 (329)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCC-----------cchHHHHHHHhCCCEEEECCCCHHHHHHH
Confidence 9999999965 566678888774 6789999999532 23578899999999999999999999999
Q ss_pred cCCCceEEeCCCCHHHHHHHHHHHHHHHHHH
Q 009574 392 DSGMPEVAADPCGEVANTFQDLGVCVVQQCA 422 (532)
Q Consensus 392 ~~g~pv~~~~p~s~~a~~~~~La~~i~~~~~ 422 (532)
.+|+++ ..|+++++++|+++|+.|.+...
T Consensus 249 ~~g~~~--~~p~s~~a~~f~~LA~~I~~~~~ 277 (329)
T cd02033 249 AAYQIV--GRPGTTWGPLFEQLATNVAEAPP 277 (329)
T ss_pred HcCCee--cCCCCHHHHHHHHHHHHHHHhcC
Confidence 999953 56889999999999999987443
No 37
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=99.93 E-value=4.6e-25 Score=221.69 Aligned_cols=230 Identities=20% Similarity=0.230 Sum_probs=147.0
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcc--cccccC----------CCCCceeecc
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLLEMN----------PEKRTIIPTE 246 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~--~~~~~~----------~~~~~i~~~~ 246 (532)
|+|+|+ +||||||||+|+|||.+||++|+|||+||+|+|++++..++|... .+.+.. ...+.+.+..
T Consensus 1 ~vIav~-gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~~~~l~g~~~~~~l~dv~~~~~~~~~~~~~~~vi~~~~ 79 (296)
T TIGR02016 1 RIIAIY-GKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSLLFGGISLPTIIEVATEKKLAGEEVKVGDVCFKTT 79 (296)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCccchhccCCCCCCHHHHHHhhccccCCCCHHHheeecc
Confidence 589999 899999999999999999999999999999999999988876322 211110 0111122221
Q ss_pred cCCcEEEecCCCCCcccccC---CchHHHHHHHHHHhcc--cCCCCEEEEcCCCCC--ChhhhhhhhhcCCCeEEEEeCC
Q 009574 247 YLGVKLVSFGFSGQGRAIMR---GPMVSGVINQLLTTTE--WGELDYLVIDMPPGT--GDIQLTLCQVVPLTAAVIVTTP 319 (532)
Q Consensus 247 ~~~l~vl~~~~~~~~~~~~~---~~~~~~~l~~ll~~~~--~~~yD~VIIDtpp~~--~~~~~~~~~~~~~d~viiV~~p 319 (532)
..+................. +... .....+++.+. ..+||||||||++.. +... .......+|.+++|+.|
T Consensus 80 ~~~~~~~~~~~e~~~~~~~~gc~~~~~-~~~~~~l~~l~~~~~~yD~IliD~~~~~~~~g~~-~~~a~~~Ad~viVvt~~ 157 (296)
T TIGR02016 80 IMNGSGGVYGMELGGPEVGRGCGGRGI-IHGFDLLEKLGFHDWDFDFVLMDFLGDVVCGGFA-TPLARSLAEEVIVIGSN 157 (296)
T ss_pred ccCcCCCcceeecCCCCcccccCcchh-hHHHHHHHHhhhhcccCCEEEEecCCCccccccc-cchhhhhCCeEEEEecc
Confidence 12111000000000000000 0110 11122222221 148999999996643 1111 11123467999999999
Q ss_pred CcchHHHHHHHH---HHHHcCC--CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCC
Q 009574 320 QKLAFIDVAKGV---RMFSKLK--VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSG 394 (532)
Q Consensus 320 ~~~s~~~~~~~i---~~l~~~~--~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g 394 (532)
+..++.++.++. +++++.+ .+++|+|+||+.. .+..+++.+.+++++++.||+++.+.++. .+
T Consensus 158 e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~-----------~~~~~~~~~~~~i~vLg~IP~d~~i~~~~-~~ 225 (296)
T TIGR02016 158 DRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDG-----------SGEAQAFAREVGIPVLAAIPADEELRRKS-LA 225 (296)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCC-----------ccHHHHHHHHcCCCeEEECCCCHHHHHHh-cC
Confidence 999987665554 4666653 6789999999532 13567888999999999999999999844 33
Q ss_pred CceEEeCCCCHHHHHHHHHHHHHHHHHHH
Q 009574 395 MPEVAADPCGEVANTFQDLGVCVVQQCAK 423 (532)
Q Consensus 395 ~pv~~~~p~s~~a~~~~~La~~i~~~~~~ 423 (532)
.+.....+.+..++.|.++++.|.+++..
T Consensus 226 ~~~~~~~~~~~~~~~f~~la~~i~~~~~~ 254 (296)
T TIGR02016 226 YQIVGSHATPRFGKLFEELAGNVADAPPL 254 (296)
T ss_pred CCeeecCCCHHHHHHHHHHHHHHHHhcCC
Confidence 44544455666999999999999887653
No 38
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=99.92 E-value=3e-24 Score=204.29 Aligned_cols=224 Identities=26% Similarity=0.352 Sum_probs=160.3
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccccc---------ccCCC----------
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL---------EMNPE---------- 238 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~---------~~~~~---------- 238 (532)
|+.|+|+|||||+||||+|+|||..|+.. +|++|+|+|...|+++.+|+.+.... ..+..
T Consensus 1 mm~vAV~sGKGGtGKTTva~~la~~l~~~-~~~~l~DcDVe~PNl~l~l~~e~~~~~e~~~~~~p~i~~e~C~~CG~C~~ 79 (284)
T COG1149 1 MMQVAVASGKGGTGKTTVAANLAVLLGDK-YKLVLADCDVEAPNLHLLLGVEVLEEEEVIRGEIPEIDPEKCIRCGKCAE 79 (284)
T ss_pred CcEEEEeecCCCCChhhHHHHHHHHhccc-cceEEEecCCCCCCcceEeccchhhhhHHHHhhccccChhhccccCcHHH
Confidence 56899999999999999999999999875 89999999999999999998764310 00000
Q ss_pred ---CCcee----------ecccCCcE---EE-ec----------C-----CCCCc------ccccCCchHHHHHHHHHHh
Q 009574 239 ---KRTII----------PTEYLGVK---LV-SF----------G-----FSGQG------RAIMRGPMVSGVINQLLTT 280 (532)
Q Consensus 239 ---~~~i~----------~~~~~~l~---vl-~~----------~-----~~~~~------~~~~~~~~~~~~l~~ll~~ 280 (532)
...+. +..-+|.. ++ |. | ....+ ......+....++..+...
T Consensus 80 vC~f~Ai~~~~~~~~~~~~~lC~GCgaC~~~CP~~AI~~~~~~~G~i~~~k~~~g~~li~g~l~vGe~~s~~lV~~~kk~ 159 (284)
T COG1149 80 VCRFGAIVVLPGGKPVLNPDLCEGCGACSIVCPEPAIEEEPVVIGKIYESKTDYGFPLISGRLNVGEEESGKLVTALKKH 159 (284)
T ss_pred hCCCCeEEEcCCCceecCcccccCcccceeeCCCcccccccceeeEEEEEEcCCCceeEEeeccCCccccchHHHHHHHh
Confidence 01111 00000000 00 00 0 00000 0001111222344444444
Q ss_pred cccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccc
Q 009574 281 TEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYP 360 (532)
Q Consensus 281 ~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~ 360 (532)
.. +..|++|||+|||.+-..... +..+|.+++|+.|++.++.+++++++..+.++++ .++|+||++ .
T Consensus 160 a~-E~~~~~IIDsaaG~gCpVi~s--l~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip-~~iViNr~~--~------- 226 (284)
T COG1149 160 AK-ELADLLIIDSAAGTGCPVIAS--LKGADLAILVTEPTPFGLHDLKRALELVEHFGIP-TGIVINRYN--L------- 226 (284)
T ss_pred hh-hhcceeEEecCCCCCChHHHh--hccCCEEEEEecCCccchhHHHHHHHHHHHhCCc-eEEEEecCC--C-------
Confidence 43 336999999999999776554 6688999999999999999999999999999998 789999952 1
Q ss_pred cCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEeCCCCHHHHHHHHHHHHHH
Q 009574 361 FGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANTFQDLGVCVV 418 (532)
Q Consensus 361 ~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~s~~a~~~~~La~~i~ 418 (532)
+....+++.+..|+++++.||++..+.++...|.|+.. ++++.+..+...+..+.
T Consensus 227 -g~s~ie~~~~e~gi~il~~IPyd~~i~~~~~~g~~~~~--~~~k~~~~~~~~~~~~~ 281 (284)
T COG1149 227 -GDSEIEEYCEEEGIPILGEIPYDKDIPEAYVNGEPFVE--PDSKEAEAILEEAEKLK 281 (284)
T ss_pred -CchHHHHHHHHcCCCeeEECCcchhHHHHHhCCCcccc--ccchHHHHHHHHHHHHH
Confidence 11258899999999999999999999999999999998 78888888777765554
No 39
>PF06155 DUF971: Protein of unknown function (DUF971); InterPro: IPR010376 This domain is found in gamma-butyrobetaine dioxygenase and trimethyllysine dioxygenase proteins.; PDB: 2L6N_A 3LUU_A 2L6P_A 3MS5_A 3O2G_A 3N6W_A.
Probab=99.92 E-value=2.6e-25 Score=182.68 Aligned_cols=87 Identities=33% Similarity=0.596 Sum_probs=74.2
Q ss_pred ceeecCccceEEEEecCCCceEeecchhhhccCCCCCcccCCCCcccccCCCCCCCceeeEEEEecCeeEEEEcCCCC-c
Q 009574 431 AVIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDGF-S 509 (532)
Q Consensus 431 ~v~~d~~~~~l~i~~~d~~~~~~i~~~~LR~~c~ca~c~~~~t~~~~~~~~~~~~~i~~~~~~~~g~yal~i~w~dgh-~ 509 (532)
.+.++...+.+.|.|.|| .++.|++.|||++||||+|+++.++|+.++...+|.+|+|.+++++|+|+|+|.|+||| +
T Consensus 2 ~i~l~~~~~~l~i~w~DG-~~~~~~~~~LRd~C~Ca~C~~~~~~~~~~~~~~~~~~v~~~~i~~~G~y~l~i~WsDGH~s 80 (89)
T PF06155_consen 2 EIKLDKDERHLEIEWSDG-QESRFPYEWLRDNCPCAECRGEETGQRRLDTADIPPDVRPKSIEPVGNYALRITWSDGHDS 80 (89)
T ss_dssp EEEEECCTTEEEEEETTS-EEEEEEHHHHHHT-SSSSTCSTTTTEE-----GCGTTTTEEEEEEETTTEEEEEETTSB--
T ss_pred eEEEecCCCEEEEEECCC-CEEEECHHHHhccCCChhhccccccCccccccccCCCceEeEEEECCCCEEEEEECCCCce
Confidence 466777889999999977 78999999999999999999999999877888999999999999999999999999999 6
Q ss_pred ccCChHHHH
Q 009574 510 QIAPYDQLQ 518 (532)
Q Consensus 510 ~~y~~~~L~ 518 (532)
|||+|+|||
T Consensus 81 giY~~~~Lr 89 (89)
T PF06155_consen 81 GIYPWEWLR 89 (89)
T ss_dssp -EEEHHHHH
T ss_pred eEecHHHhC
Confidence 899999997
No 40
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.91 E-value=7.7e-24 Score=202.30 Aligned_cols=170 Identities=21% Similarity=0.285 Sum_probs=126.4
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc---cc----ccCCCCCceeecccCCc
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---LL----EMNPEKRTIIPTEYLGV 250 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~---~~----~~~~~~~~i~~~~~~~l 250 (532)
+|+|+|+|+|||+||||+|.|||.+||+.|+||++||+|++++++..+++.... +. ......+.+.....+|+
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~l~~~i~~~~~~~l 96 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKITGLTNFLSGTTDLSDAICDTNIENL 96 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHHhCCCCCCCCHHHHhcCCCCHHHhcccCCCCCE
Confidence 789999999999999999999999999999999999999999988777765441 11 11112233333445799
Q ss_pred EEEecCCCCCc-ccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 009574 251 KLVSFGFSGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 329 (532)
Q Consensus 251 ~vl~~~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~ 329 (532)
+++|.+..... ...+.. ..+.++++.+. .+||||||||||........ .....+|.+++|+.|+..+...+.+
T Consensus 97 ~~l~~g~~~~~~~~~l~~----~~l~~~l~~l~-~~yD~ViiD~pp~~~~~~~~-~~~~~~D~vilV~~~~~~~~~~~~~ 170 (204)
T TIGR01007 97 FVITSGPVPPNPTELLQS----SNFKTLIETLR-KYFDYIIIDTPPIGTVTDAA-IIARACDASILVTDAGEIKKRDVQK 170 (204)
T ss_pred EEEeCCCCCCCHHHHhCc----HHHHHHHHHHH-hcCCEEEEeCCCccccchHH-HHHHhCCeEEEEEECCCCCHHHHHH
Confidence 99997764322 122222 33555555554 79999999999943211111 1123479999999999999999999
Q ss_pred HHHHHHcCCCCEEEEEEecccccC
Q 009574 330 GVRMFSKLKVPCIAVVENMCHFDA 353 (532)
Q Consensus 330 ~i~~l~~~~~~~~gvV~N~~~~~~ 353 (532)
.++.+++.+.+++|+|+||++...
T Consensus 171 ~~~~l~~~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 171 AKEQLEQTGSNFLGVVLNKVDISV 194 (204)
T ss_pred HHHHHHhCCCCEEEEEEeCccccc
Confidence 999999999999999999976544
No 41
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.91 E-value=4.6e-23 Score=192.19 Aligned_cols=219 Identities=20% Similarity=0.264 Sum_probs=166.4
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHC-CCcEEEEEcCCCCCCCCCCCCCccccc-------------cc-CC-------
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRLL-------------EM-NP------- 237 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~-G~rVllID~D~~~~s~~~~lg~~~~~~-------------~~-~~------- 237 (532)
+|+|+ ||||+||||+|+-||..|..+ |++||+||+|+ ..+++..||.+.... .. ..
T Consensus 2 kIaI~-GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~f 79 (255)
T COG3640 2 KIAIT-GKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMF 79 (255)
T ss_pred eEEEe-cCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC-CCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCccccc
Confidence 67887 999999999999978777766 59999999999 678888888775300 00 00
Q ss_pred ----CCCcee---ecccCCcEEEecCCCC---CcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhh
Q 009574 238 ----EKRTII---PTEYLGVKLVSFGFSG---QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQV 307 (532)
Q Consensus 238 ----~~~~i~---~~~~~~l~vl~~~~~~---~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~ 307 (532)
....+. -...++++++.+|... .+..+.- ..+++++++.+..++|||||+||-+|+.....-. .
T Consensus 80 k~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~----~allR~~l~~l~~~~~e~VivDtEAGiEHfgRg~--~ 153 (255)
T COG3640 80 KENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPM----NALLRRLLRHLILNRYEVVIVDTEAGIEHFGRGT--I 153 (255)
T ss_pred ccCcchhhhhHHHhhhcCCccEEEeccccCCCCcccchH----HHHHHHHHHHHhcccCcEEEEecccchhhhcccc--c
Confidence 000111 1223568888877653 3333332 3456677766665789999999999987554444 4
Q ss_pred cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhh
Q 009574 308 VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTL 387 (532)
Q Consensus 308 ~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i 387 (532)
..+|.+++|+.|+.-|+..+.++.++.++.+++.+++|+|++... ...+.......+.++++.||+|+.+
T Consensus 154 ~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~----------e~~~~~~~~~~~~~vlg~iP~d~~v 223 (255)
T COG3640 154 EGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE----------EELLRELAEELGLEVLGVIPYDPEV 223 (255)
T ss_pred cCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch----------hHHHHhhhhccCCeEEEEccCCHHH
Confidence 467999999999999999999999999999999999999997532 1346677788899999999999999
Q ss_pred hhcccCCCceEEeCCCCHHHHHHHHHHHHHHH
Q 009574 388 SASGDSGMPEVAADPCGEVANTFQDLGVCVVQ 419 (532)
Q Consensus 388 ~~a~~~g~pv~~~~p~s~~a~~~~~La~~i~~ 419 (532)
.++-..|.|+.... .+.++++++++.+.+
T Consensus 224 ~~~dl~G~pl~~~~---~v~~~i~~I~~~l~~ 252 (255)
T COG3640 224 VEADLKGEPLNEEP---EVLKEIEEIAERLIK 252 (255)
T ss_pred HhccccCCccccch---hhhHHHHHHHHHHHh
Confidence 99999999998763 677788888877754
No 42
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.91 E-value=9.4e-24 Score=204.55 Aligned_cols=206 Identities=18% Similarity=0.210 Sum_probs=133.8
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 257 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 257 (532)
|++|+|.|.||||||||+|+|||.+|+++|+||++||+|+|++...++ +.... . ..++......
T Consensus 1 M~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~-~~~~~--------~----~~~~~~~~~~--- 64 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWK-ENALR--------S----NTWDPACEVY--- 64 (231)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHH-Hhhcc--------c----cCCCccceec---
Confidence 589999999999999999999999999999999999999999765443 11000 0 0011000000
Q ss_pred CCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHc-
Q 009574 258 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSK- 336 (532)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~- 336 (532)
.. .....++..++...++.||||||||||+.+...... +..+|.+++|+.|+..++..+.+.++.+.+
T Consensus 65 --------~~-~~~~~l~~~l~~~~~~~yD~iiID~pp~~~~~~~~a--l~~aD~vliP~~ps~~d~~~~~~~~~~v~~~ 133 (231)
T PRK13849 65 --------AA-DELPLLEAAYEDAELQGFDYALADTHGGSSELNNTI--IASSNLLLIPTMLTPLDIDEALSTYRYVIEL 133 (231)
T ss_pred --------CC-CHHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHH--HHHCCEEEEeccCcHHHHHHHHHHHHHHHHH
Confidence 00 011234555444434689999999999988665443 567899999999999999888877765542
Q ss_pred -----CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEeCCCC--HHH-H
Q 009574 337 -----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCG--EVA-N 408 (532)
Q Consensus 337 -----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~s--~~a-~ 408 (532)
.+++ ..+++||+...... ...+..+++.+.++ -+-..|+.+..+.++...|.+.....+.+ +.. .
T Consensus 134 ~~~~~~~l~-~~iv~~~~~~~~~~-----~~~~~~~~~~~~~~-vl~t~I~~r~~~~~a~~~G~~~~~~~~~~~~~~~~~ 206 (231)
T PRK13849 134 LLSENLAIP-TAILRQRVPVGRLT-----TSQRAMSDMLESLP-VVDSPMHERDAFAAMKERGMLHLTLLNLSTDPTMRL 206 (231)
T ss_pred HHHhCCCCC-eEEEEEecccccCC-----HHHHHHHHHHhcCC-CCCccccchHHHHHHHhcCCcccchhhccccHHHHH
Confidence 2444 45999997532211 11123344444343 13355899999999999999776533332 222 2
Q ss_pred HHHHHHHHH
Q 009574 409 TFQDLGVCV 417 (532)
Q Consensus 409 ~~~~La~~i 417 (532)
..+++...+
T Consensus 207 ~~~~~~~~~ 215 (231)
T PRK13849 207 LERNLRIAM 215 (231)
T ss_pred HHHhHHHHH
Confidence 455554444
No 43
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.91 E-value=1.3e-23 Score=196.44 Aligned_cols=178 Identities=27% Similarity=0.339 Sum_probs=123.5
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCCCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 259 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~ 259 (532)
+|+|+|+|||+||||+|+|||.+| +||++||+|+++++++.++|.+......... .......++..+.+.+..
T Consensus 1 ~I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~- 73 (179)
T cd03110 1 QIAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLKPEIEEEEDFIV--GGKKAVIDPELCISCGLC- 73 (179)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCchhhhcCCCcccccccee--cCCceEEchhhhccccch-
Confidence 489999999999999999999999 7999999999999999999986532110000 000000111111111100
Q ss_pred CcccccCCchHHHHHHHHH-HhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC
Q 009574 260 QGRAIMRGPMVSGVINQLL-TTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK 338 (532)
Q Consensus 260 ~~~~~~~~~~~~~~l~~ll-~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~ 338 (532)
+... ..+.+.+ ....++.||||||||||+.++..... +..+|.+++|+.|+..++.++.+.++.+++.+
T Consensus 74 -------~~~~-~~~~~~~~~~~~~~~~d~viiDtpp~~~~~~~~~--l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~ 143 (179)
T cd03110 74 -------GKLV-TEVRKHAKEIAKAEGAELIIIDGPPGIGCPVIAS--LTGADAALLVTEPTPSGLHDLERAVELVRHFG 143 (179)
T ss_pred -------HHHH-HHHHHHHHHhhhhcCCCEEEEECcCCCcHHHHHH--HHcCCEEEEEecCCcccHHHHHHHHHHHHHcC
Confidence 1111 1222221 11224799999999999988755443 56789999999999999999999999999888
Q ss_pred CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEecc
Q 009574 339 VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLP 382 (532)
Q Consensus 339 ~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP 382 (532)
.+ +++|+|+++..... ....+++.+.+|.++++.||
T Consensus 144 ~~-~~vV~N~~~~~~~~-------~~~~~~~~~~~~~~vl~~ip 179 (179)
T cd03110 144 IP-VGVVINKYDLNDEI-------AEEIEDYCEEEGIPILGKIP 179 (179)
T ss_pred CC-EEEEEeCCCCCcch-------HHHHHHHHHHcCCCeEEeCC
Confidence 77 58999997643211 13456677788999999987
No 44
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.91 E-value=1.2e-23 Score=201.31 Aligned_cols=164 Identities=24% Similarity=0.271 Sum_probs=123.1
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHH-CCCcEEEEEcCCCCCCCCCCCCCccc--ccc----cC-CCCCceeeccc
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENR--LLE----MN-PEKRTIIPTEY 247 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~-~G~rVllID~D~~~~s~~~~lg~~~~--~~~----~~-~~~~~i~~~~~ 247 (532)
+.+++|+|+|+|||+||||+|+|||.+||+ .|+|||+||+|++++.++.+++.+.. +.+ .. ...+.+.....
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~i~~~~~ 112 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDPVLDLADVLVPTNI 112 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCCCCCCHHHHHcCCCCCHHHHhccCCC
Confidence 457899999999999999999999999997 69999999999999988888876543 111 11 12233334446
Q ss_pred CCcEEEecCCCCCccc-ccCCchHHHHHHHHHHhcccCCC--CEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchH
Q 009574 248 LGVKLVSFGFSGQGRA-IMRGPMVSGVINQLLTTTEWGEL--DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF 324 (532)
Q Consensus 248 ~~l~vl~~~~~~~~~~-~~~~~~~~~~l~~ll~~~~~~~y--D~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~ 324 (532)
++++++|.+....... .... ..+.++++.+. .+| |||||||||+.+....... ...+|.+++|+.++..+.
T Consensus 113 ~~l~vl~~g~~~~~~~~~~~~----~~l~~~l~~l~-~~y~~D~IiiD~pp~~~~~~~~~l-~~~aD~viiV~~~~~~~~ 186 (207)
T TIGR03018 113 GRLSLLPAGRRHPNPTELLAS----QRMRSLLHELA-RRYPDRIIIIDTPPLLVFSEARAL-ARLVGQIVLVVEEGRTTQ 186 (207)
T ss_pred CCEEEEeCCCCCCCHHHHhCc----HHHHHHHHHHH-hhCCCCEEEEECCCCcchhHHHHH-HHhCCEEEEEEECCCCCH
Confidence 7999999876543321 1222 34555555554 566 9999999998864322211 336799999999999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEe
Q 009574 325 IDVAKGVRMFSKLKVPCIAVVEN 347 (532)
Q Consensus 325 ~~~~~~i~~l~~~~~~~~gvV~N 347 (532)
.++.+.++.++ +.+++|+|+|
T Consensus 187 ~~~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 187 EAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred HHHHHHHHHhc--CCCeEEEEeC
Confidence 99999999998 6788999998
No 45
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.90 E-value=3.6e-23 Score=206.79 Aligned_cols=166 Identities=19% Similarity=0.285 Sum_probs=125.2
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--c---cccCCCCCceee-cccCCc
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L---LEMNPEKRTIIP-TEYLGV 250 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--~---~~~~~~~~~i~~-~~~~~l 250 (532)
..|+|+|+|+|||+||||+|+|||.+||+.|+||++||+|++++.++.+++.+.. + .......+.+.. ...+|+
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~~~~~~~~gl~~~l~~~~~~~~i~~~~~~~~l 181 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQRGLSDILAGRSDLEVITHIPALENL 181 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHhcCCCCCCCHHHHhCCCCCHHHeeecCCCCCE
Confidence 4589999999999999999999999999999999999999999998888776532 1 111112223322 235799
Q ss_pred EEEecCCCCCc-ccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 009574 251 KLVSFGFSGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 329 (532)
Q Consensus 251 ~vl~~~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~ 329 (532)
+++|++..... ...+..+ .+.++++.+. +.||||||||||......... ....+|.+++|+.++..+..++.+
T Consensus 182 ~~lp~g~~~~~~~~~~~~~----~~~~~l~~l~-~~yD~ViiD~pp~~~~~d~~~-~~~~~d~vilV~~~~~t~~~~~~~ 255 (274)
T TIGR03029 182 SVLPAGAIPPNPQELLARP----AFTDLLNKVM-GDYDVVIVDTPSAEHSSDAQI-VATRARGTLIVSRVNETRLHELTS 255 (274)
T ss_pred EEEeCcCCCCCHHHHhCcH----HHHHHHHHHH-hcCCEEEEeCCCcccccHHHH-HHHhCCeEEEEEECCCCCHHHHHH
Confidence 99998865432 2233333 3455555553 899999999999753221111 133579999999999999999999
Q ss_pred HHHHHHcCCCCEEEEEEec
Q 009574 330 GVRMFSKLKVPCIAVVENM 348 (532)
Q Consensus 330 ~i~~l~~~~~~~~gvV~N~ 348 (532)
.++.+++.+.+++|+|+|+
T Consensus 256 ~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 256 LKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred HHHHHHhCCCCEEEEEeCC
Confidence 9999999999999999996
No 46
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=99.89 E-value=7.5e-22 Score=182.75 Aligned_cols=233 Identities=22% Similarity=0.248 Sum_probs=173.5
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcc--cccc--------cCCCCCceeeccc
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLLE--------MNPEKRTIIPTEY 247 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~--~~~~--------~~~~~~~i~~~~~ 247 (532)
|+.|+|+ +|||.||||++.|+|.+||..|+||++|-+||.+.++..++|... .+.+ .....+.++...+
T Consensus 1 mr~iAiY-GKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf 79 (278)
T COG1348 1 MRQIAIY-GKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGF 79 (278)
T ss_pred CceEEEe-cCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHheeccC
Confidence 5789999 999999999999999999999999999999999999888888332 1111 1233456677778
Q ss_pred CCcEEEecCCCCCcccccCCchHHHHHHHHHHhccc-CCCCEEEEcCCCCC--ChhhhhhhhhcCCCeEEEEeCCCcchH
Q 009574 248 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEW-GELDYLVIDMPPGT--GDIQLTLCQVVPLTAAVIVTTPQKLAF 324 (532)
Q Consensus 248 ~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~-~~yD~VIIDtpp~~--~~~~~~~~~~~~~d~viiV~~p~~~s~ 324 (532)
.|++++.+|-+..+.-. .+......++.|-+.-.. +..|+||.|...-. +-....+. ---+|.+.+|+.-+.+++
T Consensus 80 ~Gv~CVEsGGPepGvGC-AGRGVitai~~Le~lgaf~~~~DvviyDVLGDVVCGGFAmPiR-eg~AdeiyIVtSge~Mal 157 (278)
T COG1348 80 GGVKCVESGGPEPGVGC-AGRGVITAINLLEELGAFEEDLDVVIYDVLGDVVCGGFAMPIR-EGYADEIYIVTSGEMMAL 157 (278)
T ss_pred CceEEeecCCCCCCCCc-ccchHHHHHHHHHHhCCccccCCEEEEeccCceeecceeeehh-cccCcEEEEEecCchHHH
Confidence 89999987765544333 233333334333322111 34699999995521 10111111 124799999999999999
Q ss_pred HHHHHHHHHHHc----CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEe
Q 009574 325 IDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAA 400 (532)
Q Consensus 325 ~~~~~~i~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~ 400 (532)
..+.+..+-+.+ .++++-|+|.|.-..+ ...+.++.+.+.+|.++++.||++..+.+|...|++++++
T Consensus 158 YAANNI~kgi~k~a~~~~~rLgGiIcNsr~~~--------~e~e~v~~fa~~igt~li~~vPr~~ivq~aE~~~kTvie~ 229 (278)
T COG1348 158 YAANNIAKGIRKYAKTGGVRLGGIICNSRSVD--------RERELVEAFAERLGTQLIHFVPRDNIVQKAELNGKTVIEY 229 (278)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeEEecCCCcc--------cHHHHHHHHHHHhCCceEeeccchHHHHHHHHcCcchhhh
Confidence 988877655544 3567899999974322 2236789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 009574 401 DPCGEVANTFQDLGVCVVQQC 421 (532)
Q Consensus 401 ~p~s~~a~~~~~La~~i~~~~ 421 (532)
+|+|..+..|++||+.|.+.-
T Consensus 230 ~P~s~~a~~yr~LA~~I~~n~ 250 (278)
T COG1348 230 APDSNQAEEYRELAKKILENE 250 (278)
T ss_pred CcchhHHHHHHHHHHHHHhCC
Confidence 999999999999999998654
No 47
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=99.88 E-value=7.6e-22 Score=188.82 Aligned_cols=241 Identities=18% Similarity=0.235 Sum_probs=156.2
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--cccc--------CCCCCceeecccC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEM--------NPEKRTIIPTEYL 248 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--~~~~--------~~~~~~i~~~~~~ 248 (532)
|.|+|+ +|||.||||++.||+.+||++|+||+.|.+||.+.++..+++.... +.+. ....+.+....+.
T Consensus 1 r~IAiY-GKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DST~~ll~g~~~~Tvld~~~~~~~~e~~~ledvv~~G~~ 79 (273)
T PF00142_consen 1 RKIAIY-GKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADSTRLLLGGKAIPTVLDLLREKGSVEDLELEDVVKEGFK 79 (273)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTSSCHHHTTSS-SBHHHHHHHHCTGGGS-HHHHSEEEGG
T ss_pred CeEEEE-cCCCcccChhhhHHHHHHHhccceeeEecccCCCccceeccCCccchhHHHHHhhccccccCCCCcEEEeccC
Confidence 579999 9999999999999999999999999999999999888777665432 1111 1112234455667
Q ss_pred CcEEEecCCCCCcccccCCchHHHHHHHHHHhcc-cCCCCEEEEcCCCCC--ChhhhhhhhhcCCCeEEEEeCCCcchHH
Q 009574 249 GVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTE-WGELDYLVIDMPPGT--GDIQLTLCQVVPLTAAVIVTTPQKLAFI 325 (532)
Q Consensus 249 ~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~yD~VIIDtpp~~--~~~~~~~~~~~~~d~viiV~~p~~~s~~ 325 (532)
|+..+.+|-+..+.-. .+......++-+-+.-. ..+||||+.|.-.-. +-....+. ---++.+++|+.-+.+|+.
T Consensus 80 gi~CvEsGGPePGvGC-aGRGI~~a~~~L~~~~~~~~~~D~v~yDVLGDVVCGGFamPir-~g~a~evyIVtSge~msly 157 (273)
T PF00142_consen 80 GILCVESGGPEPGVGC-AGRGIITALELLEELGAYEDDYDFVLYDVLGDVVCGGFAMPIR-EGYAQEVYIVTSGEFMSLY 157 (273)
T ss_dssp GEEEEE---SCTTSSB-HHHHHHHHHHHHHHTTTSTSTSSEEEEEEESSSSCTTTTHHHH-TTS-SEEEEEEBSSHHHHH
T ss_pred CceeeccCCCcccccc-cccchhhhhhhHHhhhhhhcCCceEEEEEEeeeEEeeeehhhh-hccCCEEEEEecCcHHHHH
Confidence 8888887755433222 12222223332222111 256999999974421 11111111 2246999999999999999
Q ss_pred HHHHHHHHHHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEeC
Q 009574 326 DVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 401 (532)
Q Consensus 326 ~~~~~i~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~ 401 (532)
.+.++.+.++++ +.++.|+|.|..... ...+..+++++..|.++++.||++..+.++...++++++++
T Consensus 158 AANNI~~~i~~~~~~g~~~l~GiI~N~r~~~--------~e~~~v~~fa~~~g~~i~~~iPr~~~v~~ae~~~~TVie~~ 229 (273)
T PF00142_consen 158 AANNICKAIKNFADRGGARLGGIICNSRNVD--------DEEEIVEDFAERIGTPIIAFIPRSEIVQRAELYGKTVIEAA 229 (273)
T ss_dssp HHHHHHHHHHHHCTTSS-EEEEEEEE-SSST--------THHHHHHHHHHHHTSEEEEEE---HHHHHHHHCTS-CCCC-
T ss_pred HHHHHHHHHHHHhccCCCceEEEEecCCCCC--------CchHHHHHHHHHcCCcEEEecCchHHHHHHHHcCCEEEEeC
Confidence 988877766654 357889999963221 12357889999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhcccccee
Q 009574 402 PCGEVANTFQDLGVCVVQQCAKIRQQVSTAVI 433 (532)
Q Consensus 402 p~s~~a~~~~~La~~i~~~~~~~~~~vs~~v~ 433 (532)
|+++.+..|++||+.|.+.-.. .+|.++.
T Consensus 230 P~s~~a~~yr~LA~~I~~~~~~---~~P~PL~ 258 (273)
T PF00142_consen 230 PDSEQAQEYRELARKILENPEP---VIPKPLS 258 (273)
T ss_dssp TTSHHHHHHHHHHHHHHH-------B------
T ss_pred CCcHHHHHHHHHHHHHHhCCCC---CCCCCCC
Confidence 9999999999999999866422 2455543
No 48
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.87 E-value=4.5e-22 Score=188.14 Aligned_cols=190 Identities=24% Similarity=0.320 Sum_probs=122.9
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCCCCC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQ 260 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~~ 260 (532)
|+|+|+|||+||||+|++||.+|+++|+||++||+|++++.+..+++..+...... ...... +......
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~---~~~~~~--------~~~~~~~ 69 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFGVYDILREGL---ENANAI--------LKNFESQ 69 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTTCHHHHTTSS---HGHHCH--------HESCCHH
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhcchhhccccc---eehhhh--------hhccchh
Confidence 78999999999999999999999999999999999999988777765511000000 000000 0000000
Q ss_pred ccccc-CCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC-
Q 009574 261 GRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK- 338 (532)
Q Consensus 261 ~~~~~-~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~- 338 (532)
....- .+ .....++++++.+.+..||||||||||+.+...... +..+|.+++|+.|+..++.++.++++.++..+
T Consensus 70 ~~~~~~~~-~~~~~l~~~l~~l~~~~yD~iiiD~~~~~~~~~~~~--l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~ 146 (195)
T PF01656_consen 70 DIYQGEEY-LDPELLREILESLIKSDYDYIIIDTPPGLSDPVRNA--LAAADYVIVPIEPDPSSIEGAERLIELLKRLGK 146 (195)
T ss_dssp HHHHHCHC-HHHHHHHHHHHHHHHTTSSEEEEEECSSSSHHHHHH--HHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTH
T ss_pred hhhhhhhh-hHHHHHHHHHHHhhhccccceeecccccccHHHHHH--HHhCceeeeecCCcHHHHHHHHHHHHHHHHhcc
Confidence 00000 00 233456666666543459999999999998764443 56889999999999999999999999999877
Q ss_pred -CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCc-E-EeccCchhhhh
Q 009574 339 -VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPH-L-FDLPIRPTLSA 389 (532)
Q Consensus 339 -~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~-l-~~IP~~~~i~~ 389 (532)
.+.+++|+||+....... .....+.....++.+. + +.||++..+.+
T Consensus 147 ~~~~~~vv~N~v~~~~~~~-----~~~~~~~~~~~~~~~~vl~~~Ip~~~~v~~ 195 (195)
T PF01656_consen 147 KLKIIGVVINRVDPGNESK-----LQEEIEEIERELYVPVVLPGVIPYSEAVSE 195 (195)
T ss_dssp TEEEEEEEEEEETSCCHHH-----HHHHHHHHHHHCECCCBESEEEE--HHHHH
T ss_pred ccceEEEEEeeeCCCccch-----HHHHHHHHHHHhCCCcCcCCcCCCCCCCCC
Confidence 458999999975332110 0112333334444332 2 77999887754
No 49
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=99.86 E-value=2.3e-21 Score=219.69 Aligned_cols=172 Identities=16% Similarity=0.173 Sum_probs=130.8
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc------ccccCCCCCceeecccCC
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYLG 249 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~------~~~~~~~~~~i~~~~~~~ 249 (532)
+..|+|+|+|.|||+||||+|+|||..||+.|+||+|||+|+++++++.++|.... +.+.....+.+.....+|
T Consensus 544 ~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 623 (754)
T TIGR01005 544 AEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREVSGLLDLLAGLRSLLLDLTASGAAS 623 (754)
T ss_pred CCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcccCChHHHHcCCccHHHHhccCCCCC
Confidence 45689999999999999999999999999999999999999999988888876532 111122223344556789
Q ss_pred cEEEecCCCCCc-ccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHH
Q 009574 250 VKLVSFGFSGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 328 (532)
Q Consensus 250 l~vl~~~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~ 328 (532)
++++|++..... ...+..+ .+.++++.+. +.||||||||||..+....... ...+|.+++|+.++..+...+.
T Consensus 624 l~~l~~g~~~~~~~~ll~~~----~~~~~l~~l~-~~yD~IiID~pp~~~~~d~~~l-~~~~D~vl~v~~~~~~~~~~~~ 697 (754)
T TIGR01005 624 LPMLDSGLFPHGITELLASP----AMFSLVIHAR-LYSDCVVVDVGTADPVRDMRAA-ARLAIIMLLVTAYDRVVVECGR 697 (754)
T ss_pred eeEecCCCCCCCHHHHhccH----HHHHHHHHHH-hhCCEEEEcCCCcchhHHHHHh-hhhCCeEEEEEEeCceeHHHHH
Confidence 999998854322 2233333 3444555443 7999999999998764333221 2357999999999999999999
Q ss_pred HHHHHHHcCCCCEEEEEEecccccC
Q 009574 329 KGVRMFSKLKVPCIAVVENMCHFDA 353 (532)
Q Consensus 329 ~~i~~l~~~~~~~~gvV~N~~~~~~ 353 (532)
+.++.++..+.+++|+|+|+++...
T Consensus 698 ~~~~~l~~~~~~~~GvvlN~~~~~~ 722 (754)
T TIGR01005 698 ADAQGISRLNGEVTGVFLNMLDPND 722 (754)
T ss_pred HHHHHHHhcCCceEEEEecCCChhh
Confidence 9999999999999999999976544
No 50
>PRK11519 tyrosine kinase; Provisional
Probab=99.84 E-value=3.8e-20 Score=207.63 Aligned_cols=168 Identities=18% Similarity=0.251 Sum_probs=130.6
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc------ccccCCCCCceeecccCCc
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYLGV 250 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~------~~~~~~~~~~i~~~~~~~l 250 (532)
..++|+|+|.+||+||||+|.|||..||+.|+||++||+|+++++++.++|.... +.+.....+.+.....+|+
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~l 604 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANF 604 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCCE
Confidence 4589999999999999999999999999999999999999999998888876543 1112223345555666899
Q ss_pred EEEecCCCCCcc-cccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 009574 251 KLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 329 (532)
Q Consensus 251 ~vl~~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~ 329 (532)
++||+|...... ..+ ....+.++++.+. .+||||||||||......... ....+|.+++|+.++......+..
T Consensus 605 ~~lp~g~~~~~~~ell----~s~~~~~ll~~l~-~~yD~ViiDtpP~~~v~Da~~-l~~~~d~~l~Vvr~~~t~~~~~~~ 678 (719)
T PRK11519 605 DLIPRGQVPPNPSELL----MSERFAELVNWAS-KNYDLVLIDTPPILAVTDAAI-VGRHVGTTLMVARYAVNTLKEVET 678 (719)
T ss_pred EEEeCCCCCCCHHHHh----hHHHHHHHHHHHH-hcCCEEEEeCCCcccchHHHH-HHHHCCeEEEEEeCCCCCHHHHHH
Confidence 999987543222 222 2345666666665 799999999999654221111 133569999999999999999999
Q ss_pred HHHHHHcCCCCEEEEEEeccc
Q 009574 330 GVRMFSKLKVPCIAVVENMCH 350 (532)
Q Consensus 330 ~i~~l~~~~~~~~gvV~N~~~ 350 (532)
.++.+++.+.+++|+|+|++.
T Consensus 679 ~~~~l~~~~~~~~G~VlN~v~ 699 (719)
T PRK11519 679 SLSRFEQNGIPVKGVILNSIF 699 (719)
T ss_pred HHHHHHhCCCCeEEEEEeCCc
Confidence 999999999999999999974
No 51
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.84 E-value=4.1e-20 Score=207.53 Aligned_cols=169 Identities=17% Similarity=0.166 Sum_probs=129.4
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc------ccccCCCCCceeecccCCc
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYLGV 250 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~------~~~~~~~~~~i~~~~~~~l 250 (532)
..|+|+|+|.+||+||||+|.|||.+||..|+||++||+|++++.++.+++.... +.+.....+.+.....+|+
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~l 609 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGF 609 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCCCCHHHHhCCCCCHHHheeccCCCCE
Confidence 4589999999999999999999999999999999999999999988887776532 1111222344555556799
Q ss_pred EEEecCCCCC-cccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 009574 251 KLVSFGFSGQ-GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 329 (532)
Q Consensus 251 ~vl~~~~~~~-~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~ 329 (532)
++||+|.... ....+.. ..+.++++.+. ..||||||||||.......... ...+|.+++|+.++..+...+.+
T Consensus 610 ~vl~~g~~~~~p~ell~~----~~~~~ll~~l~-~~yD~IIIDtPP~~~~~Da~~l-a~~ad~~llVvr~~~t~~~~~~~ 683 (726)
T PRK09841 610 DVITRGQVPPNPSELLMR----DRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAAVV-GRSVGTSLLVARFGLNTAKEVSL 683 (726)
T ss_pred EEEeCCCCCCCHHHHhCc----HHHHHHHHHHH-hcCCEEEEeCCCccccchHHHH-HHhCCeEEEEEeCCCCCHHHHHH
Confidence 9999875432 2222222 34566666554 7999999999997653222221 23569999999999999999999
Q ss_pred HHHHHHcCCCCEEEEEEecccc
Q 009574 330 GVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 330 ~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
.++.+++.+.+++|+|+|++..
T Consensus 684 ~~~~l~~~~~~~~G~VlN~~~~ 705 (726)
T PRK09841 684 SMQRLEQAGVNIKGAILNGVIK 705 (726)
T ss_pred HHHHHHhCCCceEEEEEeCccc
Confidence 9999999999999999999753
No 52
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=99.83 E-value=6.9e-21 Score=187.72 Aligned_cols=203 Identities=19% Similarity=0.201 Sum_probs=126.9
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc-----c------cccCCCC-CceeecccC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR-----L------LEMNPEK-RTIIPTEYL 248 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~-----~------~~~~~~~-~~i~~~~~~ 248 (532)
|.++++|||+||||+|+|+|..+|+.|+|||+||+|+++ +++.+|+.+-. . ....... ..+......
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~-sl~~~~~~~~~~~~~~~~g~~~L~~~~id~~~~~~~~~~~ 80 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH-SLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALEEYRQE 80 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc-cHHHHhCCccCCCCcccccCCCceEEecCHHHHHHHHHHH
Confidence 455669999999999999999999999999999999985 77777776510 0 0000000 000000001
Q ss_pred CcEEEecCCCCCc-------ccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh--hhh----------hhhcC
Q 009574 249 GVKLVSFGFSGQG-------RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--LTL----------CQVVP 309 (532)
Q Consensus 249 ~l~vl~~~~~~~~-------~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~--~~~----------~~~~~ 309 (532)
.++.+..+..... ....++......+..+.+.+.+.+||+|||||||. +... +.+ .....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~Pg~~e~l~~~~~~~~l~~~~yD~VVvDtpPt-g~tlrlL~lp~~l~~~~~~l~d~~ 159 (254)
T cd00550 81 VLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEAEYDVVVFDTAPT-GHTLRLLSLPTVLSWAREILSDPE 159 (254)
T ss_pred HHHHHHhhccchhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCc-HHHHHHHHhHHHHHHHHHHhcCCc
Confidence 1122221100000 00112222233445555555557999999999993 3211 111 11112
Q ss_pred CCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCC-Cccc----cccCCchHHHHHHHhCCCcEEeccCc
Q 009574 310 LTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDAD-GKRY----YPFGRGSGSQVVQQFGIPHLFDLPIR 384 (532)
Q Consensus 310 ~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~-~~~~----~~~~~~~~~~l~~~~g~~~l~~IP~~ 384 (532)
.+.+++|++|+..++.++.++++.++..++++.|+|+||+..... ...+ ...++..++++.+.|+...+..+|+.
T Consensus 160 ~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~i~~vp~~ 239 (254)
T cd00550 160 RTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPEDVTNCPFLEARREIQQKYLEEIEELFSDLPVAKLPLL 239 (254)
T ss_pred ceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCcccccCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEeecC
Confidence 357899999999999999999999999999999999999876443 1111 13345667888888876677778764
Q ss_pred h
Q 009574 385 P 385 (532)
Q Consensus 385 ~ 385 (532)
+
T Consensus 240 ~ 240 (254)
T cd00550 240 P 240 (254)
T ss_pred C
Confidence 3
No 53
>COG3536 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.83 E-value=1.1e-20 Score=152.49 Aligned_cols=93 Identities=26% Similarity=0.358 Sum_probs=85.8
Q ss_pred ccccceeecCccceEEEEecCCCceEeecchhhhccCCCCCcccCCCCcccccCCCCCCCceeeEEEEecCeeEEEEcCC
Q 009574 427 QVSTAVIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPD 506 (532)
Q Consensus 427 ~vs~~v~~d~~~~~l~i~~~d~~~~~~i~~~~LR~~c~ca~c~~~~t~~~~~~~~~~~~~i~~~~~~~~g~yal~i~w~d 506 (532)
..|+.+...+..+.+.+.|.|+ ..+.++++.||..||||+|+++..+|+.+.+++ .++.+..|+++|||||+|.|+|
T Consensus 3 ~~P~~lrvsk~r~~L~l~f~dg-~~~~L~ae~LRv~sPsAEvqghgp~q~v~v~gk--r~V~i~~i~p~GnYavri~FdD 79 (120)
T COG3536 3 QWPTELRVSKDRKVLSLTFADG-APFRLPAEFLRVLSPSAEVQGHGPGQRVLVPGK--RNVQIRDIEPVGNYAVRILFDD 79 (120)
T ss_pred CCCceeEEeccCcEEEEEeCCC-CcccCCHHHHHhcCchHHhcccCCCCceeeecc--ccceEEEeEecCceEEEEEecC
Confidence 3577778888888999999976 789999999999999999999999999999887 7999999999999999999999
Q ss_pred CC-cccCChHHHHhchh
Q 009574 507 GF-SQIAPYDQLQTMER 522 (532)
Q Consensus 507 gh-~~~y~~~~L~~~~~ 522 (532)
|| +|||+|.||++|+.
T Consensus 80 gHDsGiy~W~YL~~lg~ 96 (120)
T COG3536 80 GHDSGIYTWAYLHELGE 96 (120)
T ss_pred CcccCcccHHHHHHHhh
Confidence 99 99999999999964
No 54
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.82 E-value=1.2e-19 Score=154.47 Aligned_cols=102 Identities=28% Similarity=0.396 Sum_probs=91.2
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHC-CCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 258 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~-G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~ 258 (532)
+|+++|+|||+||||++.|||.++++. |++|+++|+|+|.+.
T Consensus 1 ~i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~------------------------------------- 43 (106)
T cd03111 1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD------------------------------------- 43 (106)
T ss_pred CEEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC-------------------------------------
Confidence 589999999999999999999999998 999999999999753
Q ss_pred CCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC
Q 009574 259 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK 338 (532)
Q Consensus 259 ~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~ 338 (532)
|||||||||+.+...... +..+|.+++|+.|+..++..+.++++.+++.+
T Consensus 44 ----------------------------D~IIiDtpp~~~~~~~~~--l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~ 93 (106)
T cd03111 44 ----------------------------DYVVVDLGRSLDEVSLAA--LDQADRVFLVTQQDLPSIRNAKRLLELLRVLD 93 (106)
T ss_pred ----------------------------CEEEEeCCCCcCHHHHHH--HHHcCeEEEEecCChHHHHHHHHHHHHHHHcC
Confidence 899999999998765543 56789999999999999999999999998876
Q ss_pred CC---EEEEEEec
Q 009574 339 VP---CIAVVENM 348 (532)
Q Consensus 339 ~~---~~gvV~N~ 348 (532)
.+ .+.+|+||
T Consensus 94 ~~~~~~~~lVvNr 106 (106)
T cd03111 94 YSLPAKIELVLNR 106 (106)
T ss_pred CCCcCceEEEecC
Confidence 54 78899886
No 55
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=99.81 E-value=1.1e-18 Score=174.70 Aligned_cols=231 Identities=23% Similarity=0.286 Sum_probs=179.7
Q ss_pred ccCcceEEEEEeCcCCCcHHHHHHHHHHHHHH-CCCcEEEEEcCCCCCCCCCCCCCccccc--c----cCCC----CCce
Q 009574 174 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENRLL--E----MNPE----KRTI 242 (532)
Q Consensus 174 ~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~-~G~rVllID~D~~~~s~~~~lg~~~~~~--~----~~~~----~~~i 242 (532)
.....++++|.+.|||+|-||+|.|+|+.++. .++.|+|+|+|.++++...+++.+.... + .+.. .+..
T Consensus 100 ~~~~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~~ 179 (366)
T COG4963 100 IAQQGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDSL 179 (366)
T ss_pred hhhhceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcCCCCcchhhhcCCCchhhHHHHhcCHHHhhHHHHHHH
Confidence 34456899999999999999999999999996 5899999999999998888877665311 1 0111 1222
Q ss_pred eecccCCcEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc
Q 009574 243 IPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL 322 (532)
Q Consensus 243 ~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~ 322 (532)
.-...+++++++..........+... .+..+++.+. ..||+||+|.|-...++.... +..+|.+++|++++..
T Consensus 180 ~~~~~~~l~ll~a~~~~~~~~d~~~~----~~~~Ll~~~~-~~~~~vV~Dlp~~~~~~t~~v--L~~Sd~iviv~e~sl~ 252 (366)
T COG4963 180 LTRLASGLKLLAAPTELAKNYDLKTG----AVERLLDLLR-GSFDFVVVDLPNIWTDWTRQV--LSGSDEIVIVAEPSLA 252 (366)
T ss_pred HhccCCCceeecCCcchhhhcccccc----hHHHHHHHhh-ccCCeEEEcCCCccchHHHHH--HhcCCeEEEEecccHH
Confidence 23345788898866544333333222 3444444443 899999999998777777666 6688999999999999
Q ss_pred hHHHHHHHHHHHHcCCC--CEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchh-hhhcccCCCceEE
Q 009574 323 AFIDVAKGVRMFSKLKV--PCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPT-LSASGDSGMPEVA 399 (532)
Q Consensus 323 s~~~~~~~i~~l~~~~~--~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~-i~~a~~~g~pv~~ 399 (532)
+++.++++++.+++.+. +....|+|++...... ..+++.+.+|++.+..+|+|+. +..|.++|+++.+
T Consensus 253 slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~~~---------~~~dl~~~~~i~~~~~~p~d~~~~~~A~n~g~~l~E 323 (366)
T COG4963 253 SLRNAKELLDELKRLRPNDPKPILVLNRVGVPKRP---------EPSDLEEILGIESLLVLPFDPALFGDAANNGRMLSE 323 (366)
T ss_pred HHHHHHHHHHHHHHhCCCCCCceEEeeecCCCCCC---------CHHHHHHHhCCchhccccCCchhhhhhhccCccccc
Confidence 99999999999998754 3678899996543322 2789999999999999999985 6789999999999
Q ss_pred eCCCCHHHHHHHHHHHHHHHH
Q 009574 400 ADPCGEVANTFQDLGVCVVQQ 420 (532)
Q Consensus 400 ~~p~s~~a~~~~~La~~i~~~ 420 (532)
.+|.+++++++..++..+...
T Consensus 324 ~~~~~~~~k~l~~la~~l~~~ 344 (366)
T COG4963 324 VDPGSPAAKALAQLAQSLGGR 344 (366)
T ss_pred cCCCChHHHHHHHHHHHhcCc
Confidence 999999999999999888654
No 56
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.81 E-value=3e-19 Score=159.90 Aligned_cols=108 Identities=36% Similarity=0.528 Sum_probs=93.5
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCCCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 259 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~ 259 (532)
+|+|+|+|||+||||++.++|..++.+|++|+++|+|+++++..
T Consensus 1 ~i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~------------------------------------ 44 (139)
T cd02038 1 IIAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLD------------------------------------ 44 (139)
T ss_pred CEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCC------------------------------------
Confidence 58999999999999999999999999999999999999886531
Q ss_pred CcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC-C
Q 009574 260 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL-K 338 (532)
Q Consensus 260 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~-~ 338 (532)
||||||||||+.+...... +..+|.+++|+.|+..++.++.+.++.+.+. +
T Consensus 45 --------------------------yd~VIiD~p~~~~~~~~~~--l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~ 96 (139)
T cd02038 45 --------------------------YDYIIIDTGAGISDNVLDF--FLAADEVIVVTTPEPTSITDAYALIKKLAKQLR 96 (139)
T ss_pred --------------------------CCEEEEECCCCCCHHHHHH--HHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcC
Confidence 8999999999988766544 5578999999999999999999998888643 4
Q ss_pred CCEEEEEEecccc
Q 009574 339 VPCIAVVENMCHF 351 (532)
Q Consensus 339 ~~~~gvV~N~~~~ 351 (532)
...+++|+||+..
T Consensus 97 ~~~~~lVvN~~~~ 109 (139)
T cd02038 97 VLNFRVVVNRAES 109 (139)
T ss_pred CCCEEEEEeCCCC
Confidence 4568999999753
No 57
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.78 E-value=4.8e-19 Score=170.70 Aligned_cols=163 Identities=22% Similarity=0.222 Sum_probs=107.2
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCC-------CCCCCCCCcccccccCCCCCceeec--------
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP-------SLPTMVSPENRLLEMNPEKRTIIPT-------- 245 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~-------s~~~~lg~~~~~~~~~~~~~~i~~~-------- 245 (532)
|.++++|||+||||++.|+|..+|++|+||++||+|++.+ ++..+++..+.... ....+...
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~~~~---~~~~~~~~~~~~~~~~ 77 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIA---PNLYREEVDATRRVER 77 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcccccccCCCchhhhccCChHHH---HHHHHHHHHHHHHhhh
Confidence 3567899999999999999999999999999999999984 33333332110000 00000000
Q ss_pred c--cCCcEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhh-hhhhc--CCCeEEEEeCCC
Q 009574 246 E--YLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT-LCQVV--PLTAAVIVTTPQ 320 (532)
Q Consensus 246 ~--~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~-~~~~~--~~d~viiV~~p~ 320 (532)
. ..+..+++.+. ..+++.....+.++++.+.+.+||||||||||+....... ...+. .+|.+++|+.|+
T Consensus 78 ~~~~~~~~~~~~~~------~~p~~~ell~~~~l~~~l~~~~yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~ 151 (217)
T cd02035 78 AWGGEGGLMLELAA------ALPGIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPE 151 (217)
T ss_pred cccchhhhHHhHhc------cCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCC
Confidence 0 01222233221 2223322333666666665445999999999964322111 11122 247899999999
Q ss_pred cchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 321 KLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 321 ~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
..+..++.++++.++..+.+..|+|+|++...
T Consensus 152 ~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 152 KLPLYETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred ccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 99999999999999999999999999997644
No 58
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.77 E-value=4.2e-18 Score=161.27 Aligned_cols=183 Identities=22% Similarity=0.322 Sum_probs=121.0
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccC-CcEEEecC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYL-GVKLVSFG 256 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~-~l~vl~~~ 256 (532)
|++|+|+|.|||+||||.+..||..|+++|.+|.+||+||+.|...|.-.... +..++ ++.+...
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~-------------~~~~~~~~~V~~~- 66 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQR-------------PGAWPDRIEVYEA- 66 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccc-------------cCCCCCCeeEEec-
Confidence 67999999999999999999999999999999999999999987655311100 00111 2222210
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHc
Q 009574 257 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSK 336 (532)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~ 336 (532)
.....+++..+......|||||||+.++.+.....+ +..+|.+++|+.++.....++.+.++++.+
T Consensus 67 ------------~e~~~l~~~~e~a~~~~~d~VlvDleG~as~~~~~a--ia~sDlVlIP~~~s~lD~~eA~~t~~~v~~ 132 (231)
T PF07015_consen 67 ------------DELTILEDAYEAAEASGFDFVLVDLEGGASELNDYA--IARSDLVLIPMQPSQLDADEAAKTFKWVRR 132 (231)
T ss_pred ------------cchhhHHHHHHHHHhcCCCEEEEeCCCCCchhHHHH--HHHCCEEEECCCCChHHHHHHHHHHHHHHH
Confidence 012245555555443569999999998777554433 557899999999999999988888887765
Q ss_pred C------CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcE-EeccCchhhhhcccCCCc
Q 009574 337 L------KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPIRPTLSASGDSGMP 396 (532)
Q Consensus 337 ~------~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l-~~IP~~~~i~~a~~~g~p 396 (532)
. .++ ..|++||+....... .+....++.+. .|++ ..+..+..++.-...|..
T Consensus 133 ~~~~~~~~ip-~~Vl~Tr~~~~~~~~-----~~~~~~e~~~~--lpvl~t~l~eR~Af~~m~~~G~l 191 (231)
T PF07015_consen 133 LEKAERRDIP-AAVLFTRVPAARLTR-----AQRIISEQLES--LPVLDTELHERDAFRAMFSRGLL 191 (231)
T ss_pred HHHhhCCCCC-eeEEEecCCcchhhH-----HHHHHHHHHhc--CCccccccccHHHHHHHHHhcch
Confidence 4 344 479999975321110 11122333332 4443 335566667766666643
No 59
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=99.76 E-value=1.8e-19 Score=170.87 Aligned_cols=209 Identities=27% Similarity=0.306 Sum_probs=107.0
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 258 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~ 258 (532)
++|+|.|+||||||||+|+|||.+|+++|+||.++|+|.++++++.+++......... ... .+. +....++
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~~r~l~nr~~~~~~~-gi~--Lp~--p~~~~L~---- 71 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSLPRYLENRAAWAQRD-GIE--LPV--PSHFFLP---- 71 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HHHHHHHHHHHHHHHH-T----------EEE-SS----
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCHHHHHhccchhHHhc-Ccc--cCC--ccceeec----
Confidence 4899999999999999999999999999999999999999999988876432211110 000 111 1111111
Q ss_pred CCcccccCCch-HHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHH------------
Q 009574 259 GQGRAIMRGPM-VSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI------------ 325 (532)
Q Consensus 259 ~~~~~~~~~~~-~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~------------ 325 (532)
........++. ....+.+++..+. .++|||||||| |.++..... +...+|.++.|.+.+...+.
T Consensus 72 ~~~~~v~~~~~~~~~~L~q~l~~l~-~~~DfLVID~P-Gtd~~lsr~-Ahs~ADtLiTPlNdSfvDfDllg~vD~~~~~v 148 (261)
T PF09140_consen 72 PDQASVWEGENVEDKRLEQALADLE-GDLDFLVIDTP-GTDDRLSRV-AHSMADTLITPLNDSFVDFDLLGQVDPETFKV 148 (261)
T ss_dssp SHHHHTTS-HHHHHHHHHHHHHHHH-HH-SEEEEEE--SSS-HHHHH-HHHT-SEEEEEEESSHHHHCCCEEE-TTTS-E
T ss_pred ccccccccCcchhHHHHHHHHHHHh-cCCCEEEEeCC-CCCcHHHHH-HHHhCCEEEccCchhHHhHHHHhccCccccee
Confidence 11112223322 2357888887775 69999999999 455443333 34566877766555443322
Q ss_pred ----HHHHHHHHHHcC-----CCCEEEE-EEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCC
Q 009574 326 ----DVAKGVRMFSKL-----KVPCIAV-VENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGM 395 (532)
Q Consensus 326 ----~~~~~i~~l~~~-----~~~~~gv-V~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~ 395 (532)
-...++-..++. +.++..| +-||..... .+....-.+.++++.+..|..+..-+-.+--+++-.-.|.
T Consensus 149 ~~ps~Yse~vw~~r~~ra~~~~~~idWvv~rnRl~~~~--a~Nk~~~~~~l~~ls~rigfr~~~G~~eRvi~RelFp~Gl 226 (261)
T PF09140_consen 149 IGPSVYSEMVWEARKLRAQADGKPIDWVVLRNRLSHLD--ARNKRRVEEALEELSKRIGFRVAPGFSERVIYRELFPRGL 226 (261)
T ss_dssp EEE-HHHHHHHHHHHCCCCTSSS--EEEEEEESBTT----HHHHHHHHHHHHHHHHHHT-EEEE--B--HHHCCCGGGT-
T ss_pred cCccHHHHHHHHHHHHHHHcCCCCccEEEEecCccHHH--hHHHHHHHHHHHHHHHhhCceeCCCcchhhhhHHhccccc
Confidence 001222222222 2334444 446643221 1111111246778888888666655666666777777777
Q ss_pred ceEEeC
Q 009574 396 PEVAAD 401 (532)
Q Consensus 396 pv~~~~ 401 (532)
++.+..
T Consensus 227 TllDl~ 232 (261)
T PF09140_consen 227 TLLDLK 232 (261)
T ss_dssp -GGGSC
T ss_pred hhhccc
Confidence 766543
No 60
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.76 E-value=9.6e-18 Score=142.30 Aligned_cols=99 Identities=32% Similarity=0.504 Sum_probs=85.6
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCCCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 259 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~ 259 (532)
+|+|.|.|||+||||+|.+||..++++|++|+++|+|++
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~----------------------------------------- 39 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ----------------------------------------- 39 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC-----------------------------------------
Confidence 589999999999999999999999999999999999997
Q ss_pred CcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHH---HHHc
Q 009574 260 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVR---MFSK 336 (532)
Q Consensus 260 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~---~l~~ 336 (532)
||+||||+||+.+...... +..+|.+++|+.|+..++..+.+.++ ..+.
T Consensus 40 --------------------------~d~viiD~p~~~~~~~~~~--l~~ad~viv~~~~~~~s~~~~~~~~~~~~~~~~ 91 (104)
T cd02042 40 --------------------------YDYIIIDTPPSLGLLTRNA--LAAADLVLIPVQPSPLDLDGLEKLLETLILEDR 91 (104)
T ss_pred --------------------------CCEEEEeCcCCCCHHHHHH--HHHCCEEEEeccCCHHHHHHHHHHHHHHHHHHh
Confidence 8999999999988665533 56789999999999999999999887 3333
Q ss_pred --CCCCEEEEEEe
Q 009574 337 --LKVPCIAVVEN 347 (532)
Q Consensus 337 --~~~~~~gvV~N 347 (532)
......++|+|
T Consensus 92 ~~~~~~~~~vv~n 104 (104)
T cd02042 92 LNPDLDILGILPT 104 (104)
T ss_pred cCCCCceEEEEeC
Confidence 24557888876
No 61
>COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]
Probab=99.75 E-value=4.3e-18 Score=142.62 Aligned_cols=88 Identities=31% Similarity=0.621 Sum_probs=81.5
Q ss_pred CCCcccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCeeeEEE
Q 009574 76 VSTGTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNV 155 (532)
Q Consensus 76 ~~~~~~~~~v~~~L~~V~DPel~~~Iv~lglv~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~v 155 (532)
.....++++|+++|++|+|||+|+|||+|||||+|++++.++.+.|.|++|+++||+.+.+..++++++..++|+++++|
T Consensus 8 ~~~~~~~~~i~~aL~~V~DPEi~idIvdLGLVy~v~i~~~~~~v~v~mtlT~~gCP~~~~i~~~v~~al~~~~~v~~v~V 87 (111)
T COG2151 8 EAIKVTLEDILEALKTVIDPEIGIDIVDLGLVYEVDIDDVDGLVKVKMTLTSPGCPLAEVIADQVEAALEEIPGVEDVEV 87 (111)
T ss_pred chhhhhHHHHHHHhhcCCCcccceeeEeeccEEEEEEecCCceEEEEEecCCCCCCccHHHHHHHHHHHHhcCCcceEEE
Confidence 33456899999999999999999999999999999998722799999999999999999999999999999999999999
Q ss_pred EcccCCCc
Q 009574 156 TMSAQPAR 163 (532)
Q Consensus 156 ~l~~~p~~ 163 (532)
+++|+|+.
T Consensus 88 ~l~~~p~W 95 (111)
T COG2151 88 ELTLSPPW 95 (111)
T ss_pred EEEEcCCC
Confidence 99999874
No 62
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=99.74 E-value=1.1e-17 Score=168.56 Aligned_cols=197 Identities=22% Similarity=0.255 Sum_probs=124.5
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceee-cccCCcEEEecC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIP-TEYLGVKLVSFG 256 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~-~~~~~l~vl~~~ 256 (532)
||+|.|+ |||||||||+|+.+|.++|++|+|||++..||.+ ++...||.+-. ..... ...+||+.+..+
T Consensus 1 ~r~~~~~-GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~-~L~d~l~~~~~--------~~~~~v~~~~~L~a~eid 70 (305)
T PF02374_consen 1 MRILFFG-GKGGVGKTTVAAALALALARRGKRTLLVSTDPAH-SLSDVLGQKLG--------GEPTKVEGVPNLSAMEID 70 (305)
T ss_dssp -SEEEEE-ESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT-HHHHHHTS--B--------SS-EEETTCSSEEEEE--
T ss_pred CeEEEEe-cCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc-cHHHHhCCcCC--------CCCeEecCCCCceeeecC
Confidence 4566665 9999999999999999999999999999999987 44444444210 00000 011344433311
Q ss_pred CC---------------------------CCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhh------
Q 009574 257 FS---------------------------GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT------ 303 (532)
Q Consensus 257 ~~---------------------------~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~------ 303 (532)
.. ......++|......+..+.+.+..++||+||+||||.-....+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~l~~~~~~~~~D~IVvDt~ptg~tLrlL~lP~~l 150 (305)
T PF02374_consen 71 PEAELEEYWEEVQKDLSSLLPLIGLERILDEELSSLPGLDELAALLRLADLLESGEYDLIVVDTPPTGHTLRLLSLPERL 150 (305)
T ss_dssp HHHHHHHHHHHHHHGCSTCHHCHHHHHHHHHHTTSSTTHHHHHHHHHHHHHHHHCSTSEEEEESSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccchhhhhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCEEEECCCCcHHHHHHHhHHHHH
Confidence 00 000112244444445666666665699999999999952211000
Q ss_pred --------------------h------------------------------hhhcCCCeEEEEeCCCcchHHHHHHHHHH
Q 009574 304 --------------------L------------------------------CQVVPLTAAVIVTTPQKLAFIDVAKGVRM 333 (532)
Q Consensus 304 --------------------~------------------------------~~~~~~d~viiV~~p~~~s~~~~~~~i~~ 333 (532)
. ..-.....+++|++|+..++.++.+++..
T Consensus 151 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lV~~pE~l~i~Et~r~~~~ 230 (305)
T PF02374_consen 151 RWWLDRLLKLRRKIRSLARPLSGLGLGAVPLDEILEELEEMRERLERLRELLRDPERTSFRLVTNPEPLAIAETERLLTE 230 (305)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHCHSHCCHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEecCCcchHHHHHHHHHH
Confidence 0 00002357899999999999999999999
Q ss_pred HHcCCCCEEEEEEecccccCCCc-cc----cccCCchHHHHHHHhCCCcEEeccCc
Q 009574 334 FSKLKVPCIAVVENMCHFDADGK-RY----YPFGRGSGSQVVQQFGIPHLFDLPIR 384 (532)
Q Consensus 334 l~~~~~~~~gvV~N~~~~~~~~~-~~----~~~~~~~~~~l~~~~g~~~l~~IP~~ 384 (532)
++..|+++-++|+||+....... .+ ...++..++++.+.|....+..+|..
T Consensus 231 L~~~gi~v~~vVvNrvlp~~~~~c~~~~~r~~~Q~~~l~~i~~~f~~~~v~~vp~~ 286 (305)
T PF02374_consen 231 LKLYGIPVDAVVVNRVLPEEEDDCPFCAARRKEQQKYLAEIEESFPDLPVVKVPLL 286 (305)
T ss_dssp HHHTT-EEEEEEEEEE-TTCSTTSHHHHHHHHHHHHHHHHHHHHTTTSEEEEEE--
T ss_pred HHhcCCccCeEEEEccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 99999999999999986655332 11 23355677888888876667777753
No 63
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=99.68 E-value=4.3e-17 Score=148.80 Aligned_cols=141 Identities=26% Similarity=0.376 Sum_probs=98.0
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--ccc----c---------CCCCCcee
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLE----M---------NPEKRTII 243 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--~~~----~---------~~~~~~i~ 243 (532)
|+|+|+|.+||+||||+|.|||..||+.|++|++||+|...+.+..+++.+.. +.. . ....+.+.
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~ 80 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLSRLLGIEPERGLSDLLYDKKSGDENLSERDLSDHIY 80 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHHHHTTSSSSSSHHHHHTTSHC--C-HHHSHHHHHCE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCcccccccccccchhhHhcCccccccchhhhhHHHHhe
Confidence 68999999999999999999999999999999999999999988888876653 111 1 01112233
Q ss_pred ecccCCcEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch
Q 009574 244 PTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 323 (532)
Q Consensus 244 ~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s 323 (532)
+....+++++++.........+.... +.++++.+. ..||+||||+|+......... .+..+|.+++|+.++..+
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~li~~l~-~~yd~IivD~~~~~~~~~~~~-~l~~~D~ii~v~~~~~~s 154 (157)
T PF13614_consen 81 SDAHDGLDLLPPPSSPEDLEELTPED----VEELIDALK-EHYDYIIVDLPSSLSNPDTQA-VLELADKIILVVRPDVTS 154 (157)
T ss_dssp EESSTTEEEE--SSSSHHHHHHTSHH----HHHHHHHHH-HHSSEEEEEEESTTTHTHHHH-HHTTHSEEEEEEETTHHH
T ss_pred eccCCCeEEecCCCCCCchhhcCHHH----HHHHHHHHH-HcCCEEEEECcCCccHHHHHH-HHHHCCEEEEEECCCccc
Confidence 33447899998665554444444443 444444444 599999999999887654421 255779999999999887
Q ss_pred HH
Q 009574 324 FI 325 (532)
Q Consensus 324 ~~ 325 (532)
++
T Consensus 155 ~~ 156 (157)
T PF13614_consen 155 IR 156 (157)
T ss_dssp HH
T ss_pred cc
Confidence 64
No 64
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.65 E-value=1.5e-15 Score=152.69 Aligned_cols=205 Identities=22% Similarity=0.280 Sum_probs=129.7
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCC----cccccc-----cCCCCCceeecccC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSP----ENRLLE-----MNPEKRTIIPTEYL 248 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~----~~~~~~-----~~~~~~~i~~~~~~ 248 (532)
++++.|+ |||||||||+|+.+|..+|+.|+|||+|.+||.++. ...|+. +..-.. ...+........++
T Consensus 2 ~riv~f~-GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL-~d~f~~elg~~~~~I~~nL~a~eiD~~~~l~ey~~ 79 (322)
T COG0003 2 TRIVFFT-GKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSL-GDVFDLELGHDPRKVGPNLDALELDPEKALEEYWD 79 (322)
T ss_pred cEEEEEe-cCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCch-HhhhccccCCchhhcCCCCceeeecHHHHHHHHHH
Confidence 4566555 999999999999999999999999999999998854 444433 111000 00000000000000
Q ss_pred CcE-----EEec----CCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhh-h--------hh-----
Q 009574 249 GVK-----LVSF----GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-T--------LC----- 305 (532)
Q Consensus 249 ~l~-----vl~~----~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~-~--------~~----- 305 (532)
.+. .++. +...+....++|-.....+..+.+....++||+||+||||.-....+ . +-
T Consensus 80 ~v~~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~DtaPTG~TLRlL~lP~~~~~~~~~~~~~ 159 (322)
T COG0003 80 EVKDYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDTAPTGHTLRLLSLPEVLGWYLEKLFKP 159 (322)
T ss_pred HHHHHHHhhccccccchhHHHHHhhCCCHHHHHHHHHHHHHHhccCCCEEEEcCCChHHHHHHhccHHHHHHHHHhhhhh
Confidence 000 1111 11122334456666666777787777778999999999994211000 0 00
Q ss_pred ---h--------------------------------------h--cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEE
Q 009574 306 ---Q--------------------------------------V--VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCI 342 (532)
Q Consensus 306 ---~--------------------------------------~--~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~ 342 (532)
. + ..-....+|..|+..++.+..+++..+...++++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~~~~~~~~~~~~l~~~~~T~~~lV~~pe~l~l~e~~ra~~~l~~~~i~v~ 239 (322)
T COG0003 160 RRKRMVKALKSLSTAAGSPLPDDAVLEALEELKERIADVREVLTNPDGTSFRLVSIPEKLSLYETKRAVERLSLYGIPVD 239 (322)
T ss_pred HHHHHHHhhhhcccccCCcCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEecccccchHHHHHHHHHHHHcCCchh
Confidence 0 0 01245688999999999999999999999999999
Q ss_pred EEEEecccccCCCcc----ccccCCchHHHHHHHhCCCcEEeccCc
Q 009574 343 AVVENMCHFDADGKR----YYPFGRGSGSQVVQQFGIPHLFDLPIR 384 (532)
Q Consensus 343 gvV~N~~~~~~~~~~----~~~~~~~~~~~l~~~~g~~~l~~IP~~ 384 (532)
++++|++.+...... ....++....++.+.|....+..+|.-
T Consensus 240 ~vi~n~~~p~~~~~~~~~~~~~~q~~~l~~~~~~f~~~~v~~vp~~ 285 (322)
T COG0003 240 AVIVNKILPDEADQPFLEARRKIQQKYLKELEETFSDLAVVKVPLL 285 (322)
T ss_pred eeeeecccccccccHHHHHHHHHHHHHHHHHHHhhcccceEEeccc
Confidence 999999876654321 112344566777778876677777753
No 65
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=99.61 E-value=5.3e-16 Score=161.12 Aligned_cols=79 Identities=23% Similarity=0.287 Sum_probs=73.3
Q ss_pred EEEEecCCCceEeecchhhhccCCCCCcccCCCCcccccCCCCCCCceeeEEEEecC-eeEEEEcCCCCcccCChHHHHh
Q 009574 441 IKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGN-YAVSITWPDGFSQIAPYDQLQT 519 (532)
Q Consensus 441 l~i~~~d~~~~~~i~~~~LR~~c~ca~c~~~~t~~~~~~~~~~~~~i~~~~~~~~g~-yal~i~w~dgh~~~y~~~~L~~ 519 (532)
+.|.|.++ .+..|++.|||++|+|++|+|+.|+||++++.++|.+|+|.+++..|+ +.+.|.|+|||.|+|+|+||++
T Consensus 2 l~v~w~dg-~~~~~~~~wLRd~C~c~~c~~~~t~qr~~~~~~i~~~i~~~~~~~~~~~~~~~i~w~DgH~s~y~~~wL~~ 80 (366)
T TIGR02409 2 VNVKWQDG-KTSRFPAIWLRDNCPCPDCYTISNGARKLLVLDIPVEINIRKLWIDDDGNLVVIFWPDGHLSEFPAEWLKK 80 (366)
T ss_pred eEEEeCCC-CEeeecCeEeecCCCCCCccCcccCCccCchhhcCCcccceEEEEcCCCcEEEEEecCCCceEcCHHHHhh
Confidence 67899976 588899999999999999999999999999999999999999999885 4589999999999999999987
Q ss_pred c
Q 009574 520 M 520 (532)
Q Consensus 520 ~ 520 (532)
.
T Consensus 81 ~ 81 (366)
T TIGR02409 81 R 81 (366)
T ss_pred c
Confidence 5
No 66
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=99.59 E-value=2.5e-15 Score=152.54 Aligned_cols=243 Identities=20% Similarity=0.217 Sum_probs=167.1
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCeeeEE
Q 009574 78 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 154 (532)
Q Consensus 78 ~~~~~~~v~~~L~~V~DPel~~~I---v~lglv~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~ 154 (532)
+..++++|.+++++|+-..|..|| |...|+++|+-...+.++. .+-...+++.+.+.+.|.++-|..+.+
T Consensus 20 ~~i~E~~i~e~~reir~ALLeADVnl~vVk~fi~~ikera~g~ev~-------~~l~p~q~~iKiV~eELv~llG~~~~~ 92 (451)
T COG0541 20 GRITEKDVKEALREIRRALLEADVNLKVVKDFIKRIKERALGEEVP-------KGLTPGQQFIKIVYEELVKLLGGENSE 92 (451)
T ss_pred CcCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhccccCC-------CCCCHHHHHHHHHHHHHHHHhCCCCcc
Confidence 446899999999999999998888 8899999987654323332 234467899999999999887765555
Q ss_pred EEcccCCCcchhhccccccccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccc
Q 009574 155 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 234 (532)
Q Consensus 155 v~l~~~p~~~~~~~~~~~~~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~ 234 (532)
+++...+| .+|.++ |-.|+||||+|..||.+|.++|+||++|-+|.++|..-.
T Consensus 93 ~~l~~~~P----------------~vImmv-GLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~e---------- 145 (451)
T COG0541 93 LNLAKKPP----------------TVILMV-GLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIE---------- 145 (451)
T ss_pred cccCCCCC----------------eEEEEE-eccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHH----------
Confidence 55543333 378888 889999999999999999999999999999999986311
Q ss_pred cCCCCCceeecccCCcEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhh------hhhhhc
Q 009574 235 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL------TLCQVV 308 (532)
Q Consensus 235 ~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~------~~~~~~ 308 (532)
+.-.-...-++.+.+.+.. .......++.++.+....||+|||||.+.+.-... .+....
T Consensus 146 -----QL~~La~q~~v~~f~~~~~---------~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~ 211 (451)
T COG0541 146 -----QLKQLAEQVGVPFFGSGTE---------KDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVI 211 (451)
T ss_pred -----HHHHHHHHcCCceecCCCC---------CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhc
Confidence 1111112235556653211 12233445555555557899999999885432111 111223
Q ss_pred CCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEE
Q 009574 309 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 379 (532)
Q Consensus 309 ~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~ 379 (532)
.-|.+++|+... .-.++....+.|++ .+++.|||+++.+.+.++ +..-.+....|.|+-+
T Consensus 212 ~P~E~llVvDam--~GQdA~~~A~aF~e-~l~itGvIlTKlDGdaRG--------GaALS~~~~tg~PIkF 271 (451)
T COG0541 212 NPDETLLVVDAM--IGQDAVNTAKAFNE-ALGITGVILTKLDGDARG--------GAALSARAITGKPIKF 271 (451)
T ss_pred CCCeEEEEEecc--cchHHHHHHHHHhh-hcCCceEEEEcccCCCcc--------hHHHhhHHHHCCCeEE
Confidence 347788887643 33445556666666 467789999998777665 4566777888877554
No 67
>PRK10867 signal recognition particle protein; Provisional
Probab=99.57 E-value=6.2e-15 Score=154.17 Aligned_cols=243 Identities=19% Similarity=0.192 Sum_probs=148.2
Q ss_pred cccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCeeeEEE
Q 009574 79 GTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNV 155 (532)
Q Consensus 79 ~~~~~~v~~~L~~V~DPel~~~I---v~lglv~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~v 155 (532)
..++++|.+.|++++...+..|| +...|+..|+-...+..+.- +....+.+.+.+++.|..+-+.....+
T Consensus 21 ~~~e~~i~~~l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~~~~~~~-------~~~~~~~~~~~v~~el~~~l~~~~~~~ 93 (433)
T PRK10867 21 RLTEADIKEALREVRLALLEADVNLPVVKDFIARVKEKAVGQEVLK-------SLTPGQQVIKIVNDELVEILGGENSEL 93 (433)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccc-------cCCcHHHHHHHHHHHHHHHhCCCccee
Confidence 45778899999999998888777 66677776643221111211 111345677777777766544222222
Q ss_pred EcccCCCcchhhccccccccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHC-CCcEEEEEcCCCCCCCCCCCCCcccccc
Q 009574 156 TMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRLLE 234 (532)
Q Consensus 156 ~l~~~p~~~~~~~~~~~~~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~-G~rVllID~D~~~~s~~~~lg~~~~~~~ 234 (532)
++. .+...+|.++ |.+|+||||++++||.+|++. |++|++||+|.+++.....+.
T Consensus 94 ~~~----------------~~~p~vI~~v-G~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~------- 149 (433)
T PRK10867 94 NLA----------------AKPPTVIMMV-GLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLK------- 149 (433)
T ss_pred eec----------------CCCCEEEEEE-CCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHH-------
Confidence 221 1223577777 899999999999999999998 999999999999865321110
Q ss_pred cCCCCCceeecccCCcEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCC--hhhhh----hhhhc
Q 009574 235 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQLT----LCQVV 308 (532)
Q Consensus 235 ~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~--~~~~~----~~~~~ 308 (532)
......|+.+++.+... .......+.++......||+|||||++... +.... +....
T Consensus 150 --------~~a~~~gv~v~~~~~~~---------dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v 212 (433)
T PRK10867 150 --------TLGEQIGVPVFPSGDGQ---------DPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAV 212 (433)
T ss_pred --------HHHhhcCCeEEecCCCC---------CHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhh
Confidence 00122356666543111 112333344443334789999999999653 11111 11122
Q ss_pred CCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEe
Q 009574 309 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 380 (532)
Q Consensus 309 ~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~ 380 (532)
..+.+++|+.+.. -.++.+..+.|.+ .+++.|+|+|+.+...++ +....+...++.|+.+.
T Consensus 213 ~p~evllVlda~~--gq~av~~a~~F~~-~~~i~giIlTKlD~~~rg--------G~alsi~~~~~~PI~fi 273 (433)
T PRK10867 213 NPDEILLVVDAMT--GQDAVNTAKAFNE-ALGLTGVILTKLDGDARG--------GAALSIRAVTGKPIKFI 273 (433)
T ss_pred CCCeEEEEEeccc--HHHHHHHHHHHHh-hCCCCEEEEeCccCcccc--------cHHHHHHHHHCcCEEEE
Confidence 3467788887632 3445555555654 456789999997654432 45777888888876653
No 68
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=99.53 E-value=2e-14 Score=150.28 Aligned_cols=243 Identities=19% Similarity=0.248 Sum_probs=143.9
Q ss_pred cccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCeeeEEE
Q 009574 79 GTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNV 155 (532)
Q Consensus 79 ~~~~~~v~~~L~~V~DPel~~~I---v~lglv~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~v 155 (532)
..++++|.+.|++++...+..|| +...|+..|+-...+..+.- +....+.+.+.+.+.|..+-+-....+
T Consensus 20 ~~~e~~i~~~l~ei~~~Ll~aDV~~~~v~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~~v~~eL~~~l~~~~~~~ 92 (428)
T TIGR00959 20 TITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLK-------SLSPGQQFIKIVHEELVAILGGENASL 92 (428)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhccccccc-------cCCcHHHHHHHHHHHHHHHhCCCCccc
Confidence 46888999999999999888887 55677776643211011111 112345677788888776543221111
Q ss_pred EcccCCCcchhhccccccccCcceEEEEEeCcCCCcHHHHHHHHHHHHH-HCCCcEEEEEcCCCCCCCCCCCCCcccccc
Q 009574 156 TMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGPSLPTMVSPENRLLE 234 (532)
Q Consensus 156 ~l~~~p~~~~~~~~~~~~~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA-~~G~rVllID~D~~~~s~~~~lg~~~~~~~ 234 (532)
.+ ..+...+|.+ +|..|+||||++++||.+|+ +.|++|++||+|.+++.....+.
T Consensus 93 ~~----------------~~~~p~vi~~-vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~------- 148 (428)
T TIGR00959 93 NL----------------AKKPPTVILM-VGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLK------- 148 (428)
T ss_pred cc----------------CCCCCEEEEE-ECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHH-------
Confidence 11 0112335554 49999999999999999987 68999999999998875321100
Q ss_pred cCCCCCceeecccCCcEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCC--hhhhh----hhhhc
Q 009574 235 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQLT----LCQVV 308 (532)
Q Consensus 235 ~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~--~~~~~----~~~~~ 308 (532)
......++.++..+.. ........+.++......||+||||||+... +.... +....
T Consensus 149 --------~~a~~~gvp~~~~~~~---------~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~ 211 (428)
T TIGR00959 149 --------VLGQQVGVPVFALGKG---------QSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEIL 211 (428)
T ss_pred --------HHHHhcCCceEecCCC---------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhh
Confidence 0001123334432211 1112223333333333789999999999543 11111 11122
Q ss_pred CCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEe
Q 009574 309 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 380 (532)
Q Consensus 309 ~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~ 380 (532)
..+.+++|+.+. .-.++.+..+.+.. .+++.|+|+|+.+...++ +....+...++.|+.+.
T Consensus 212 ~p~e~lLVvda~--tgq~~~~~a~~f~~-~v~i~giIlTKlD~~~~~--------G~~lsi~~~~~~PI~fi 272 (428)
T TIGR00959 212 NPDEILLVVDAM--TGQDAVNTAKTFNE-RLGLTGVVLTKLDGDARG--------GAALSVRSVTGKPIKFI 272 (428)
T ss_pred CCceEEEEEecc--chHHHHHHHHHHHh-hCCCCEEEEeCccCcccc--------cHHHHHHHHHCcCEEEE
Confidence 357788888864 23455555555552 345689999997644432 45778888888877653
No 69
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.51 E-value=5.3e-14 Score=146.26 Aligned_cols=243 Identities=13% Similarity=0.123 Sum_probs=144.5
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCeeeEE
Q 009574 78 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 154 (532)
Q Consensus 78 ~~~~~~~v~~~L~~V~DPel~~~I---v~lglv~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~ 154 (532)
+..++++|.+.|++++...+..|| +...|+.+|+-...+..+ . .+....+.+.+.+.+.|..+-+-....
T Consensus 20 ~~l~e~~i~~~l~ei~~aLleaDV~~~vv~~~~~~v~~~~~~~~~------~-~~~~~~~~v~~~v~~~L~~~l~~~~~~ 92 (429)
T TIGR01425 20 TVIDEEVLNAMLKEICTALLESDVNIKLVRQLRENIKKAINLEEM------A-SGLNKRKMIQHAVFKELCNLVDPGVEA 92 (429)
T ss_pred CccCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccc------c-cccCHHHHHHHHHHHHHHHHhCCCCcc
Confidence 446899999999999999888888 667777776543211111 1 122234577788888887643321111
Q ss_pred EEcccCCCcchhhccccccccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccc
Q 009574 155 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 234 (532)
Q Consensus 155 v~l~~~p~~~~~~~~~~~~~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~ 234 (532)
+.. ..+..++|+++ |.+|+||||++++||.+|++.|++|++|++|+++++....+..
T Consensus 93 ~~~----------------~~~~~~vi~lv-G~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~------ 149 (429)
T TIGR01425 93 FTP----------------KKGKQNVIMFV-GLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQ------ 149 (429)
T ss_pred ccc----------------cCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHH------
Confidence 110 11224688888 8999999999999999999999999999999998643211100
Q ss_pred cCCCCCceeecccCCcEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhh------hhhhc
Q 009574 235 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT------LCQVV 308 (532)
Q Consensus 235 ~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~------~~~~~ 308 (532)
.....++.+...... ........+.++.+....||+||||||+........ .....
T Consensus 150 ---------~a~~~~vp~~~~~~~---------~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~ 211 (429)
T TIGR01425 150 ---------NATKARIPFYGSYTE---------SDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAI 211 (429)
T ss_pred ---------HhhccCCeEEeecCC---------CCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhc
Confidence 001123333321111 111222233333333368999999999865321111 11122
Q ss_pred CCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEE
Q 009574 309 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 379 (532)
Q Consensus 309 ~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~ 379 (532)
..+.+++|+.+.. . .+.....+.|++ ..++.|+|+|+.+...++ +..-.+....+.|+.+
T Consensus 212 ~p~e~lLVlda~~-G-q~a~~~a~~F~~-~~~~~g~IlTKlD~~arg--------G~aLs~~~~t~~PI~f 271 (429)
T TIGR01425 212 QPDNIIFVMDGSI-G-QAAEAQAKAFKD-SVDVGSVIITKLDGHAKG--------GGALSAVAATKSPIIF 271 (429)
T ss_pred CCcEEEEEecccc-C-hhHHHHHHHHHh-ccCCcEEEEECccCCCCc--------cHHhhhHHHHCCCeEE
Confidence 3467788877643 2 223344456654 245689999997765543 3455667777776554
No 70
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.50 E-value=5.2e-13 Score=132.62 Aligned_cols=168 Identities=15% Similarity=0.158 Sum_probs=102.7
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 256 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 256 (532)
.+++|+|+ |++|+||||++++||..+++.|++|++||+|+++.... . +........++.+++.+
T Consensus 71 ~~~vi~l~-G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~------~---------ql~~~~~~~~i~~~~~~ 134 (272)
T TIGR00064 71 KPNVILFV-GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAI------E---------QLEEWAKRLGVDVIKQK 134 (272)
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHH------H---------HHHHHHHhCCeEEEeCC
Confidence 35799999 89999999999999999999999999999998654310 0 00000111234455433
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhh------hhhc------CCCeEEEEeCCCcchH
Q 009574 257 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL------CQVV------PLTAAVIVTTPQKLAF 324 (532)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~------~~~~------~~d~viiV~~p~~~s~ 324 (532)
...+ ....+...+.....++||+|||||||........+ .... ..+.+++|+... ...
T Consensus 135 ~~~d---------p~~~~~~~l~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~-~~~ 204 (272)
T TIGR00064 135 EGAD---------PAAVAFDAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT-TGQ 204 (272)
T ss_pred CCCC---------HHHHHHHHHHHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECC-CCH
Confidence 2111 11112121222223789999999999654211110 0111 268889998886 556
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEe
Q 009574 325 IDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 380 (532)
Q Consensus 325 ~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~ 380 (532)
.++.++..+.+.. ++.|+|+|+++...+. +..-.+...++.|+.+.
T Consensus 205 ~~~~~~~~f~~~~--~~~g~IlTKlDe~~~~--------G~~l~~~~~~~~Pi~~~ 250 (272)
T TIGR00064 205 NALEQAKVFNEAV--GLTGIILTKLDGTAKG--------GIILSIAYELKLPIKFI 250 (272)
T ss_pred HHHHHHHHHHhhC--CCCEEEEEccCCCCCc--------cHHHHHHHHHCcCEEEE
Confidence 6666665544444 4579999997654432 45666777778765543
No 71
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=99.48 E-value=1.5e-13 Score=108.38 Aligned_cols=72 Identities=43% Similarity=0.730 Sum_probs=65.2
Q ss_pred HHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCeeeEEE
Q 009574 82 ENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNV 155 (532)
Q Consensus 82 ~~~v~~~L~~V~DPel~~~Iv~lglv~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~v 155 (532)
+++|+++|++|.||+++.||+++|+|++|.+++ ++|.|.|++++|+|+..+.+.++++++|.+++|+.+++|
T Consensus 1 k~~V~~aL~~v~dP~~~~~iv~~g~V~~i~i~~--~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 1 KQAVRDALKQVKDPELGKDIVELGMVRDISIEG--GKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp HHHHHHHHTT-BETTTSSBTTTTTSEEEEEECT--CEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred CHHHHHHHhCCCCCCCCCCHHHcCCeeEEEEEC--CEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 578999999999999999999999999999998 899999999999999999999999999999999988865
No 72
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=99.47 E-value=2.7e-14 Score=147.89 Aligned_cols=66 Identities=26% Similarity=0.328 Sum_probs=61.5
Q ss_pred ecchhhhccCCCCCcccCCCCcccccCCCCC---CCceeeEEEEecCeeEEEEcCCCCcccCChHHHHhc
Q 009574 454 LHPATVRRNDRSAQSVDEWTGDQKLQYTDVP---EDIEPEEIRPMGNYAVSITWPDGFSQIAPYDQLQTM 520 (532)
Q Consensus 454 i~~~~LR~~c~ca~c~~~~t~~~~~~~~~~~---~~i~~~~~~~~g~yal~i~w~dgh~~~y~~~~L~~~ 520 (532)
|++.|||+||+|++|+|+.|+||++++.++| .+|.+.++...+++ |+|.|+|||.|.|+++||++.
T Consensus 2 f~~iWLRD~c~c~~c~~~~t~qRl~~~~~i~~~~~~i~~~~~~~~~~~-l~i~W~dgh~s~y~~~wL~~~ 70 (362)
T TIGR02410 2 FHNVWLRDNCTCQECYHLATHQRLLNSFDITSLSEDIKPATVIIDEDT-LRVTWPDGHVSKFKEDWLIRH 70 (362)
T ss_pred CCCeeeecCCCCCccCCCCCCCcccchhhCCCcccCccccEEEEeCCe-EEEEecCCCceecCHHHHHhc
Confidence 6889999999999999999999999888887 99999999988775 999999999999999999865
No 73
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=99.45 E-value=2.4e-13 Score=107.31 Aligned_cols=77 Identities=56% Similarity=0.961 Sum_probs=59.7
Q ss_pred CEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccC--CCccccccCC
Q 009574 287 DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA--DGKRYYPFGR 363 (532)
Q Consensus 287 D~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~--~~~~~~~~~~ 363 (532)
||+|||+|||+++..+++.+....+.+++|++|+..|..+++|.++++++.+++++|+|.||..+.+ +++.++.|++
T Consensus 2 D~LiiD~PPGTgD~~l~~~~~~~~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs~~~Cp~Cg~~~~iFg~ 80 (81)
T PF10609_consen 2 DYLIIDLPPGTGDEHLTLMQYLPIDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENMSYFVCPHCGERIYIFGK 80 (81)
T ss_dssp CEEEEE--SCSSSHHHHHHHHH--SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-EEE-TTT--EEETTTT
T ss_pred CEEEEeCCCCCCcHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccCCCCCCCeecCCCC
Confidence 8999999999999999998888899999999999999999999999999999999999999999887 3566555554
No 74
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.45 E-value=2.2e-12 Score=116.49 Aligned_cols=145 Identities=21% Similarity=0.278 Sum_probs=85.8
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCC-CCCCCCcccccccCCCCCceeecccCCcEEEecCCCC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL-PTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 259 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~-~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~ 259 (532)
|.+. ||||+||||++.+++..+.++|.||+++|+|++.+.. ..+++....+ .+.. ..+++.+...+...
T Consensus 2 i~~~-G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~------~~~~---~~~~~~~~~~~~~~ 71 (148)
T cd03114 2 IGIT-GVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRM------ERHA---SDPGVFIRSLATRG 71 (148)
T ss_pred EEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEh------hhee---cCCCceEEEcCCcC
Confidence 4555 9999999999999999999999999999999865432 1122211100 0111 12344443322111
Q ss_pred CcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCC
Q 009574 260 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKV 339 (532)
Q Consensus 260 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~ 339 (532)
.. .... ......+ +.+....|||||||| +|.+.....+ ...+|.+++|++|+...-..+.+. .+++..+
T Consensus 72 ~~-~~~~-~~~~~~~----~~~~~~~~D~iiIDt-aG~~~~~~~~--~~~Ad~~ivv~tpe~~D~y~~~k~-~~~~~~~- 140 (148)
T cd03114 72 FL-GGLS-RATPEVI----RVLDAAGFDVIIVET-VGVGQSEVDI--ASMADTTVVVMAPGAGDDIQAIKA-GIMEIAD- 140 (148)
T ss_pred cc-cccc-hhHHHHH----HHHHhcCCCEEEEEC-CccChhhhhH--HHhCCEEEEEECCCchhHHHHhhh-hHhhhcC-
Confidence 10 0000 1112222 222225899999999 6666544433 557899999999996555555444 4455443
Q ss_pred CEEEEEEecc
Q 009574 340 PCIAVVENMC 349 (532)
Q Consensus 340 ~~~gvV~N~~ 349 (532)
-+++|++
T Consensus 141 ---~~~~~k~ 147 (148)
T cd03114 141 ---IVVVNKA 147 (148)
T ss_pred ---EEEEeCC
Confidence 4677874
No 75
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=99.45 E-value=2.4e-13 Score=127.76 Aligned_cols=210 Identities=18% Similarity=0.153 Sum_probs=125.7
Q ss_pred ccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCC---CCCcccccccCCCC--CceeecccC
Q 009574 174 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM---VSPENRLLEMNPEK--RTIIPTEYL 248 (532)
Q Consensus 174 ~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~---lg~~~~~~~~~~~~--~~i~~~~~~ 248 (532)
+.+......|++|||||||||.+..||..||+-+.+||+|..||.++.++.+ |+..+......... -.|.|. .
T Consensus 14 l~q~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlSDAF~qkftk~pt~V~Gf~nLfAMEIDp~--~ 91 (323)
T KOG2825|consen 14 LEQTSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLSDAFSQKFTKTPTKVEGFENLFAMEIDPN--V 91 (323)
T ss_pred hhcceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccchHHHHHHHhcCCCccccChhhheeeecCCc--h
Confidence 3344556777889999999999999999999999999999999999766554 22221111100000 000000 0
Q ss_pred CcEEEe--------------cCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCC-CChhhhhh---------
Q 009574 249 GVKLVS--------------FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPG-TGDIQLTL--------- 304 (532)
Q Consensus 249 ~l~vl~--------------~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~-~~~~~~~~--------- 304 (532)
++.=++ .|...+-...++|-+..-.+.+++..+..-+||.||+||.|. -....+..
T Consensus 92 e~~~~~~m~~~~~~n~~~~g~g~l~e~~~~~Pgideamsfae~~klvk~~~F~~vVFDTAPTGHTLRlL~fP~~lek~lg 171 (323)
T KOG2825|consen 92 EMGDMPEMFGNAANNEGSDGKGMLQELANAFPGIDEAMSFAEVMKLVKGMNFDVVVFDTAPTGHTLRLLQFPTTLEKGLG 171 (323)
T ss_pred hhhhhHHHhhcccccccccchhHHHHHHhcCCChhHHHhHHHHHHHhhccccceEEeccCCCcceehhhccchHHHHHHH
Confidence 000011 000000011123333333455555555557899999999993 11111100
Q ss_pred -------------------hh----------------------------hcCCCeEEEEeCCCcchHHHHHHHHHHHHcC
Q 009574 305 -------------------CQ----------------------------VVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL 337 (532)
Q Consensus 305 -------------------~~----------------------------~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~ 337 (532)
.. -..+...++|+.|+..|+.++.|+++.+.+.
T Consensus 172 Kl~~l~~k~~pm~sq~~sm~g~~~~~~~~l~~kle~~~~~i~~vn~qFkdpd~TtFVcVcI~eflslyEteRliqeL~k~ 251 (323)
T KOG2825|consen 172 KLLSLKNKIGPMLSQMGSMFGMEDAGADDLAGKLEELLEVIEKVNEQFKDPDCTTFVCVCIAEFLSLYETERLIQELAKQ 251 (323)
T ss_pred HHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEHHHHHhHHHHHHHHHHHHhc
Confidence 00 0135677999999999999999999999999
Q ss_pred CCCEEEEEEecccccCCC-cc-----ccccCCchHHHHHHHhCCCcEEeccCch
Q 009574 338 KVPCIAVVENMCHFDADG-KR-----YYPFGRGSGSQVVQQFGIPHLFDLPIRP 385 (532)
Q Consensus 338 ~~~~~gvV~N~~~~~~~~-~~-----~~~~~~~~~~~l~~~~g~~~l~~IP~~~ 385 (532)
+++.-.+|+|..-+.... .. -...+..++.++.+.|..-.+..+|..+
T Consensus 252 ~idthnIIVNQLL~~~~~~~ck~C~ar~k~Q~kyLdqi~elyedfhv~klPl~~ 305 (323)
T KOG2825|consen 252 GIDTHNIIVNQLLFPDNEVSCKKCAARRKMQSKYLDQIEELYEDFHVVKLPLLP 305 (323)
T ss_pred CCcccceeeeeccCCCCccchHHHHHHHHHHHHHhhhHHHHHhhcceeecccch
Confidence 999999999997665431 00 0123344566666666654556667544
No 76
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=99.44 E-value=7.5e-13 Score=121.15 Aligned_cols=86 Identities=26% Similarity=0.482 Sum_probs=79.7
Q ss_pred CcccHHHHHHHhccCCCCCCCCCccccCCeeEEEEec---CCCeEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCeeeEE
Q 009574 78 TGTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINE---ALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 154 (532)
Q Consensus 78 ~~~~~~~v~~~L~~V~DPel~~~Iv~lglv~~v~i~~---~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~ 154 (532)
...++++|+++|++|+||+++.|||++|+|+++.+++ .+++|.|.|++|.|+|++.+.+.++++++|.+++|+++++
T Consensus 71 ~~~~ee~V~eaL~tV~DPei~~nIVeLGlV~~I~Id~~~~~~~~V~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~ 150 (174)
T TIGR03406 71 GEDNEDQVWEQLRTVYDPEIPVNIVDLGLVYGCRVEKLGEGQFRVDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVE 150 (174)
T ss_pred ccccHHHHHHHHcCCCCCCCCCChHHcCCeEEEEEecccCCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEE
Confidence 3567789999999999999999999999999999987 2238999999999999999999999999999999999999
Q ss_pred EEcccCCCc
Q 009574 155 VTMSAQPAR 163 (532)
Q Consensus 155 v~l~~~p~~ 163 (532)
|++.++|+.
T Consensus 151 V~l~~dp~W 159 (174)
T TIGR03406 151 VELVFDPPW 159 (174)
T ss_pred EEEEecCCC
Confidence 999999985
No 77
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=99.44 E-value=3.9e-13 Score=141.05 Aligned_cols=240 Identities=16% Similarity=0.164 Sum_probs=145.0
Q ss_pred cccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCeeeEEE
Q 009574 79 GTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNV 155 (532)
Q Consensus 79 ~~~~~~v~~~L~~V~DPel~~~I---v~lglv~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~v 155 (532)
..++++|.++|++++...+..|| +...|+.+|.-...+..+ ..+....+.+.+.+.+.|..+-+......
T Consensus 17 ~l~e~~i~~~l~ei~~aLl~adV~~~~~~~~~~~v~~~~~~~~~-------~~~~~~~~~~~~~v~~~L~~~l~~~~~~~ 89 (437)
T PRK00771 17 RIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEP-------PKGLTPREHVIKIVYEELVKLLGEETEPL 89 (437)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccc-------cccCCcHHHHHHHHHHHHHHHhCCCcccc
Confidence 46888999999999999888887 556666666422110111 12334455667777777765433211100
Q ss_pred EcccCCCcchhhccccccccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccccccc
Q 009574 156 TMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEM 235 (532)
Q Consensus 156 ~l~~~p~~~~~~~~~~~~~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~ 235 (532)
. ....+.+|+++ |.+|+||||++++||..|++.|++|++||+|.+.+.....+..
T Consensus 90 ~-----------------~~~~p~vI~lv-G~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~------- 144 (437)
T PRK00771 90 V-----------------LPLKPQTIMLV-GLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQ------- 144 (437)
T ss_pred c-----------------cCCCCeEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHH-------
Confidence 0 11224588887 8999999999999999999999999999999987642111000
Q ss_pred CCCCCceeecccCCcEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhh------hhhhhcC
Q 009574 236 NPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL------TLCQVVP 309 (532)
Q Consensus 236 ~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~------~~~~~~~ 309 (532)
....-++.+.... ........+.+.++.. ..+|+|||||++....... .......
T Consensus 145 --------la~~~gvp~~~~~---------~~~d~~~i~~~al~~~--~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~ 205 (437)
T PRK00771 145 --------LAEKIGVPFYGDP---------DNKDAVEIAKEGLEKF--KKADVIIVDTAGRHALEEDLIEEMKEIKEAVK 205 (437)
T ss_pred --------HHHHcCCcEEecC---------CccCHHHHHHHHHHHh--hcCCEEEEECCCcccchHHHHHHHHHHHHHhc
Confidence 0001122222211 0112233445555444 4579999999986542111 1222345
Q ss_pred CCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEe
Q 009574 310 LTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 380 (532)
Q Consensus 310 ~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~ 380 (532)
.|.+++|+.+... .++....+.|.+ .+++.|+|+|+.+...++ +..-.+...++.|+.+.
T Consensus 206 pdevlLVvda~~g--q~av~~a~~F~~-~l~i~gvIlTKlD~~a~~--------G~~ls~~~~~~~Pi~fi 265 (437)
T PRK00771 206 PDEVLLVIDATIG--QQAKNQAKAFHE-AVGIGGIIITKLDGTAKG--------GGALSAVAETGAPIKFI 265 (437)
T ss_pred ccceeEEEecccc--HHHHHHHHHHHh-cCCCCEEEEecccCCCcc--------cHHHHHHHHHCcCEEEE
Confidence 6888998887553 233344444543 256789999997654433 46677788888776543
No 78
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.38 E-value=1.4e-11 Score=114.32 Aligned_cols=164 Identities=21% Similarity=0.230 Sum_probs=99.5
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCCCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 259 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~ 259 (532)
++.++ |+.|+||||++.++|..+++.|++|++||+|.+++.....+.. .....++.+++.....
T Consensus 2 ~~~~~-G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~---------------~~~~~~~~~~~~~~~~ 65 (173)
T cd03115 2 VILLV-GLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRV---------------LGEQVGVPVFEEGEGK 65 (173)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHH---------------hcccCCeEEEecCCCC
Confidence 44555 9999999999999999999999999999999987653221110 0012345555532211
Q ss_pred CcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCCh--hhhh----hhhhcCCCeEEEEeCCCcchHHHHHHHHHH
Q 009574 260 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--IQLT----LCQVVPLTAAVIVTTPQKLAFIDVAKGVRM 333 (532)
Q Consensus 260 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~--~~~~----~~~~~~~d~viiV~~p~~~s~~~~~~~i~~ 333 (532)
.....+.+.+....+..||+||||+|+.... ..+. .......+.+++|+.+. ..........++
T Consensus 66 ---------~~~~~~~~~~~~~~~~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~-~~~~~~~~~~~~ 135 (173)
T cd03115 66 ---------DPVSIAKRAIEHAREENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAM-TGQDAVNQAKAF 135 (173)
T ss_pred ---------CHHHHHHHHHHHHHhCCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECC-CChHHHHHHHHH
Confidence 1222233333333347899999999996531 1111 11112368889998885 333444444444
Q ss_pred HHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEE
Q 009574 334 FSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 379 (532)
Q Consensus 334 l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~ 379 (532)
.+..+ +.++|+|+++...+. +..-.+....+.|+.+
T Consensus 136 ~~~~~--~~~viltk~D~~~~~--------g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 136 NEALG--ITGVILTKLDGDARG--------GAALSIRAVTGKPIKF 171 (173)
T ss_pred HhhCC--CCEEEEECCcCCCCc--------chhhhhHHHHCcCeEe
Confidence 44555 589999997644322 2233477888877654
No 79
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.33 E-value=6e-11 Score=120.27 Aligned_cols=167 Identities=16% Similarity=0.177 Sum_probs=100.7
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 257 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 257 (532)
+++|+++ |..|+||||++.+||..++..|++|+++|+|+++..... +........++.+++...
T Consensus 114 ~~vi~lv-GpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~e---------------ql~~~a~~~~i~~~~~~~ 177 (318)
T PRK10416 114 PFVILVV-GVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIE---------------QLQVWGERVGVPVIAQKE 177 (318)
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHH---------------HHHHHHHHcCceEEEeCC
Confidence 4699999 699999999999999999999999999999997743100 000111223455555322
Q ss_pred CCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhh------hhhh------hcCCCeEEEEeCCCcchHH
Q 009574 258 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL------TLCQ------VVPLTAAVIVTTPQKLAFI 325 (532)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~------~~~~------~~~~d~viiV~~p~~~s~~ 325 (532)
..+. ....+..+.... ...||+|||||||....... .+.. -...+.+++|+... ....
T Consensus 178 ~~dp--------a~~v~~~l~~~~-~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~-~g~~ 247 (318)
T PRK10416 178 GADP--------ASVAFDAIQAAK-ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDAT-TGQN 247 (318)
T ss_pred CCCH--------HHHHHHHHHHHH-hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECC-CChH
Confidence 1111 111122222222 37899999999996531110 0000 01346677887777 3455
Q ss_pred HHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEe
Q 009574 326 DVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 380 (532)
Q Consensus 326 ~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~ 380 (532)
++.++....+.. ++.|+|+|+.+...+. +..-.+...++.|+.+.
T Consensus 248 ~~~~a~~f~~~~--~~~giIlTKlD~t~~~--------G~~l~~~~~~~~Pi~~v 292 (318)
T PRK10416 248 ALSQAKAFHEAV--GLTGIILTKLDGTAKG--------GVVFAIADELGIPIKFI 292 (318)
T ss_pred HHHHHHHHHhhC--CCCEEEEECCCCCCCc--------cHHHHHHHHHCCCEEEE
Confidence 555554444333 5579999997643322 45666677778776553
No 80
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=99.31 E-value=8.2e-12 Score=107.78 Aligned_cols=111 Identities=31% Similarity=0.348 Sum_probs=69.7
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCC---
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF--- 257 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~--- 257 (532)
|+++ +|||+||||++.++|..|+++|++|++||+|+ +++...++... .++..++-.+.
T Consensus 2 i~~~-GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~--~~~~~~~~~~~----------------~~~~~~i~~g~~~~ 62 (116)
T cd02034 2 IAIT-GKGGVGKTTIAALLARYLAEKGKPVLAIDADP--DDLPERLSVEV----------------GEIKLLLVMGMGRP 62 (116)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc--hhhHHHHhhcc----------------CCceEEEEeccccc
Confidence 4444 89999999999999999999999999999999 22222221110 01111111111
Q ss_pred CCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEE
Q 009574 258 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIV 316 (532)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV 316 (532)
...+...... ..+++++..+....|||+|+||++|+....... ...+|.+++|
T Consensus 63 ~~~g~~~~~n----~~~~~~l~~~~~~~~~~vivDt~ag~e~~~~~~--~~~~d~vv~v 115 (116)
T cd02034 63 GGEGCYCPEN----ALLNALLRHLVLTRDEQVVVDTEAGLEHLGRGT--AEGVDLLVVV 115 (116)
T ss_pred CCCCCEehhh----HHHHHHHHHeEccCCCEEEEecHHHHHHHHhhc--cccCCEEEEe
Confidence 1122222111 256777776545899999999999987665443 2355766665
No 81
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=99.28 E-value=5.2e-11 Score=114.91 Aligned_cols=48 Identities=31% Similarity=0.378 Sum_probs=44.5
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT 224 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~ 224 (532)
|++++.|.++||||||||+|++||.+|+++|++|++||+|++++++..
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~ 48 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEG 48 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhh
Confidence 678999999999999999999999999999999999999999876543
No 82
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=99.28 E-value=4.1e-11 Score=99.28 Aligned_cols=94 Identities=40% Similarity=0.608 Sum_probs=74.1
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCCCCC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQ 260 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~~ 260 (532)
+++. +++|+||||++.+||..|++.|++|+++|
T Consensus 2 ~~~~-g~~G~Gktt~~~~l~~~l~~~g~~v~~~~---------------------------------------------- 34 (99)
T cd01983 2 IVVT-GKGGVGKTTLAANLAAALAKRGKRVLLID---------------------------------------------- 34 (99)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEC----------------------------------------------
Confidence 3444 77799999999999999999999999999
Q ss_pred cccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhh-hhhhhcCCCeEEEEeCCCcchHHHHHHHHHH---HHc
Q 009574 261 GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRM---FSK 336 (532)
Q Consensus 261 ~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~-~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~---l~~ 336 (532)
|+||+|++++.+.... .......+|.+++|+.++..++....+..+. ...
T Consensus 35 --------------------------d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~ 88 (99)
T cd01983 35 --------------------------DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALAVLGARRLTEVVLELAI 88 (99)
T ss_pred --------------------------CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchhhHHHHHHHHHHHHHhhc
Confidence 8999999998876541 0122456799999999999999988887542 333
Q ss_pred CCCCEEEEEEe
Q 009574 337 LKVPCIAVVEN 347 (532)
Q Consensus 337 ~~~~~~gvV~N 347 (532)
.+....++++|
T Consensus 89 ~~~~~~~vv~N 99 (99)
T cd01983 89 EGLRPVGVVVN 99 (99)
T ss_pred cCCceEEEEeC
Confidence 34556777776
No 83
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=99.21 E-value=1.5e-10 Score=106.82 Aligned_cols=152 Identities=18% Similarity=0.177 Sum_probs=89.2
Q ss_pred EEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc---cc---ccCCCCCceeecccCCcEEEecC
Q 009574 183 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---LL---EMNPEKRTIIPTEYLGVKLVSFG 256 (532)
Q Consensus 183 v~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~---~~---~~~~~~~~i~~~~~~~l~vl~~~ 256 (532)
|++..+|+||||+|.+||..|+++|+||++++--..+.. +.+.+ +. ........+. .+ ....+
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~~g~~V~~~kP~~~~~~-----~~d~d~~~i~~~~~~~~~~~~~~-----~~-~~~~~ 70 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKKAGYSVGYYKPVQTGIE-----KTNSDALLLQNISGTALDWDEVN-----PY-AFALP 70 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHHCCCcEEEEEeeeeCCC-----CCchHHHHHHHHcCCCCchhccC-----Ce-eeCCC
Confidence 578899999999999999999999999999754433211 00000 00 0000000000 00 00000
Q ss_pred CCCCcccccCC-chHHHHHHHHHHhcccCCCCEEEEcCCCCCChh------hhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 009574 257 FSGQGRAIMRG-PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI------QLTLCQVVPLTAAVIVTTPQKLAFIDVAK 329 (532)
Q Consensus 257 ~~~~~~~~~~~-~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~------~~~~~~~~~~d~viiV~~p~~~s~~~~~~ 329 (532)
..........+ +.....+.+.++.+. ++||+||||+|++.... ...+... -.+.+++|+.+...++..+..
T Consensus 71 ~~p~~~~~~~~~~~~~~~i~~~~~~l~-~~~D~viid~~g~~~~~~~~~~~~~dl~~~-~~~~vilV~~~~~~~~~~~~~ 148 (166)
T TIGR00347 71 LSPHIAADQEGRPIDLEELSKHLRTLE-QKYDFVLVEGAGGLCVPITEEYTTADLIKL-LQLPVILVVRVKLGTINHTLL 148 (166)
T ss_pred CChHHHHHHhCCCCCHHHHHHHHHHHH-hcCCEEEEEcCCccccCCCCCCcHHHHHHH-hCCCEEEEECCCCcHHHHHHH
Confidence 00000000000 111122444444443 78999999999864321 1111111 135689999999999999999
Q ss_pred HHHHHHcCCCCEEEEEEe
Q 009574 330 GVRMFSKLKVPCIAVVEN 347 (532)
Q Consensus 330 ~i~~l~~~~~~~~gvV~N 347 (532)
..+.+++.+.++.|+|+|
T Consensus 149 ~~~~l~~~~~~i~gvv~N 166 (166)
T TIGR00347 149 TVEHARQTGLTLAGVILN 166 (166)
T ss_pred HHHHHHHCCCCeEEEEeC
Confidence 999999999999999998
No 84
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.20 E-value=3.4e-10 Score=115.48 Aligned_cols=164 Identities=15% Similarity=0.160 Sum_probs=100.3
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 257 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 257 (532)
.++|+|+ |.+|+||||+++.||..|..+|++|+++++|.++.....- + .......|+.++...
T Consensus 241 ~~vI~LV-GptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQ------L---------k~yae~lgipv~v~~- 303 (436)
T PRK11889 241 VQTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQ------L---------QDYVKTIGFEVIAVR- 303 (436)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHH------H---------HHHhhhcCCcEEecC-
Confidence 4688988 6699999999999999999999999999999987321100 0 000111244444311
Q ss_pred CCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhh------hhhhhcCCCeEEEEeCCCcchHHHHHHHH
Q 009574 258 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL------TLCQVVPLTAAVIVTTPQKLAFIDVAKGV 331 (532)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~------~~~~~~~~d~viiV~~p~~~s~~~~~~~i 331 (532)
....+...+..+.. ..+||+|||||++....... .......-+.+++|+.+. ....++...+
T Consensus 304 --------d~~~L~~aL~~lk~---~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsAT-tk~~d~~~i~ 371 (436)
T PRK11889 304 --------DEAAMTRALTYFKE---EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAS-MKSKDMIEII 371 (436)
T ss_pred --------CHHHHHHHHHHHHh---ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCc-cChHHHHHHH
Confidence 11112223333321 13699999999985432111 111112236677776554 3445666777
Q ss_pred HHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEe
Q 009574 332 RMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 380 (532)
Q Consensus 332 ~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~ 380 (532)
+.|+. .++.++|+++.+-.... +.+-.+...++.|+.+.
T Consensus 372 ~~F~~--~~idglI~TKLDET~k~--------G~iLni~~~~~lPIsyi 410 (436)
T PRK11889 372 TNFKD--IHIDGIVFTKFDETASS--------GELLKIPAVSSAPIVLM 410 (436)
T ss_pred HHhcC--CCCCEEEEEcccCCCCc--------cHHHHHHHHHCcCEEEE
Confidence 78876 45679999996644322 56677778888876653
No 85
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=99.19 E-value=1.2e-10 Score=112.78 Aligned_cols=193 Identities=16% Similarity=0.084 Sum_probs=108.4
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccccc-ccCCCCCceeecccCCcEEEecCCCC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL-EMNPEKRTIIPTEYLGVKLVSFGFSG 259 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~-~~~~~~~~i~~~~~~~l~vl~~~~~~ 259 (532)
|.|++.-.|+|||+++++|+..|+++|++|..+--=..+..- .....+..+. ........ ...... .........
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~KPv~~g~~~-~~~~~d~~~~~~~~~~~~~--~~~~~~-~~~~~~~sp 77 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYKPVQSGCEE-TDRNGDALALQRLSGLPLD--YEDVNP-YRFEEPLSP 77 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEeeEecCCCC-CCCcHHHHHHHHHcCCCCC--hhhcCc-eeeCCCCCH
Confidence 678889999999999999999999999999885421111100 0000000000 00000000 000000 111111000
Q ss_pred CcccccCC-chHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhh---hhhhhc--CCCeEEEEeCCCcchHHHHHHHHHH
Q 009574 260 QGRAIMRG-PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL---TLCQVV--PLTAAVIVTTPQKLAFIDVAKGVRM 333 (532)
Q Consensus 260 ~~~~~~~~-~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~---~~~~~~--~~d~viiV~~p~~~s~~~~~~~i~~ 333 (532)
.-.....+ ......+.+.++.+. ++||+||||+++|...... ..+.+. --..+++|+.++..++..+...++.
T Consensus 78 ~~a~~~~~~~~~~~~i~~~~~~l~-~~~D~viIEg~gg~~~~~~~~~~~adl~~~l~~pvilV~~~~~~~i~~~~~~i~~ 156 (222)
T PRK00090 78 HLAAALEGVAIDLEKISAALRRLA-QQYDLVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKLGCINHTLLTLEA 156 (222)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHH-hhCCEEEEECCCceeccCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHH
Confidence 00000000 111123344444444 7899999999987532211 001010 1134788999988888888888888
Q ss_pred HHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccC
Q 009574 334 FSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPI 383 (532)
Q Consensus 334 l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~ 383 (532)
++..+.++.|+|+|++.... . ...++..+.+.+.++.++++.+|+
T Consensus 157 l~~~~~~i~gvIlN~~~~~~-~----~~~~~~~~~l~~~~gi~vlg~ip~ 201 (222)
T PRK00090 157 IRARGLPLAGWVANGIPPEP-G----LRHAENLATLERLLPAPLLGELPY 201 (222)
T ss_pred HHHCCCCeEEEEEccCCCcc-h----hHHHHHHHHHHHHcCCCeEEecCC
Confidence 88889999999999965431 1 123356788889999999999996
No 86
>KOG3889 consensus Predicted gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=99.19 E-value=1.3e-11 Score=116.75 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=64.7
Q ss_pred ceEeecchhhhccCCCCCcccCCCCcccccCCCCCCCceeeEEEEecCeeEEEEcCCCCcccCChHHHHhc
Q 009574 450 EEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDGFSQIAPYDQLQTM 520 (532)
Q Consensus 450 ~~~~i~~~~LR~~c~ca~c~~~~t~~~~~~~~~~~~~i~~~~~~~~g~yal~i~w~dgh~~~y~~~~L~~~ 520 (532)
..+.+++.|||+||+|++|++-.|.||..|+.+++.+|.|..+...+. .|+|.|+|||.|.|..+|+-.=
T Consensus 16 ~~~~~~~vWLRDHCrs~~cyn~~TnQR~~D~~sl~~~i~p~~v~~De~-tLq~~W~DgH~skydl~~i~~~ 85 (371)
T KOG3889|consen 16 SKLIMPFVWLRDHCRSQKCYNLPTNQRKCDITSLSKIIHPNQVIIDEA-TLQIVWIDGHQSKYDLGNIIRE 85 (371)
T ss_pred ceEEeeeeehhhhcchhhhcCCccccccccccccchhcCcceEEEcCc-EEEEEeccccccccchhHHhhh
Confidence 367788999999999999999999999999999999999999999875 5999999999999999998654
No 87
>KOG3888 consensus Gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=99.19 E-value=1.1e-11 Score=121.59 Aligned_cols=83 Identities=16% Similarity=0.237 Sum_probs=70.6
Q ss_pred ccceEEEEecCCCceEeecchhhhccCCCCCcccCCCCcccccCCCCCCCceeeEEEEec-CeeEEEEcCCCCcccCChH
Q 009574 437 SIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMG-NYAVSITWPDGFSQIAPYD 515 (532)
Q Consensus 437 ~~~~l~i~~~d~~~~~~i~~~~LR~~c~ca~c~~~~t~~~~~~~~~~~~~i~~~~~~~~g-~yal~i~w~dgh~~~y~~~ 515 (532)
..+-+++.|.++ ++..|+..|||+||||+.|+++.++-|++.....+.+|.|..+...- ..-|.|.|+|||.|.|+.+
T Consensus 24 ~~~iv~v~~~d~-~~~~fp~iwlrDncpc~~Cf~~s~kark~~~~~~d~~i~~~~l~~ded~k~l~I~W~Dgh~s~Fpl~ 102 (407)
T KOG3888|consen 24 RSHIVQVPWFDR-KSLTFPFIWLRDNCPCSDCFSPSAKARKLLWDHFDVNIRPQDLQIDEDRKSLVIKWSDGHHSQFPLQ 102 (407)
T ss_pred CcceEeecccCC-CcccccceeeecCCcchhhcCHHHHHHHhhhhhcccccccceeeEcccCcEEEEEecCCCcccCCHH
Confidence 345677789866 78899999999999999999999999988777777888888877752 2469999999999999999
Q ss_pred HHHhc
Q 009574 516 QLQTM 520 (532)
Q Consensus 516 ~L~~~ 520 (532)
||+.=
T Consensus 103 wlker 107 (407)
T KOG3888|consen 103 WLKER 107 (407)
T ss_pred HHHhh
Confidence 99864
No 88
>PRK13768 GTPase; Provisional
Probab=99.16 E-value=2.2e-10 Score=112.94 Aligned_cols=45 Identities=29% Similarity=0.256 Sum_probs=39.7
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 222 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~ 222 (532)
|+++|.|+ |+||+||||++.+++.+++++|++|++||+|++...+
T Consensus 1 ~~~~i~v~-G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~ 45 (253)
T PRK13768 1 MMYIVFFL-GTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYL 45 (253)
T ss_pred CcEEEEEE-CCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccC
Confidence 56777777 7799999999999999999999999999999976543
No 89
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=99.16 E-value=2.4e-10 Score=95.97 Aligned_cols=81 Identities=27% Similarity=0.590 Sum_probs=74.9
Q ss_pred HHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCeeeEEEEcccCC
Q 009574 82 ENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQP 161 (532)
Q Consensus 82 ~~~v~~~L~~V~DPel~~~Iv~lglv~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~v~l~~~p 161 (532)
+++|.++|++|+||+++.+++++|+|+++.++++ +.+.|.++++.|+|+..+.+.+++++++..++|+.+++|++...+
T Consensus 3 ~~~I~~~L~~v~dP~l~~~lv~~g~V~~i~v~~~-~~v~i~l~l~~p~~~~~~~l~~~i~~al~~l~gv~~v~v~i~~~~ 81 (99)
T TIGR02945 3 KDAVIEALKTVYDPEIPVNIYELGLIYDIDVDDD-GHVDIQMTLTAPNCPVAGSMPGEVENAVRAVPGVGSVTVELVWDP 81 (99)
T ss_pred HHHHHHHHcCCCCCCCCCCeecCCCeeEEEECCC-CeEEEEEEECCCCCChHHHHHHHHHHHHHhCCCCceEEEEEEeeC
Confidence 5789999999999999999999999999999852 589999999999999999999999999999999999999988776
Q ss_pred Cc
Q 009574 162 AR 163 (532)
Q Consensus 162 ~~ 163 (532)
+.
T Consensus 82 ~~ 83 (99)
T TIGR02945 82 PW 83 (99)
T ss_pred CC
Confidence 53
No 90
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.09 E-value=1.9e-09 Score=109.72 Aligned_cols=165 Identities=17% Similarity=0.189 Sum_probs=96.6
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 256 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 256 (532)
..++|+|++. .|+||||++++||..+.++|++|++|++|+++......+ .. .....++.+...
T Consensus 205 ~~~ii~lvGp-tGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQL------k~---------yae~lgvpv~~~- 267 (407)
T PRK12726 205 NHRIISLIGQ-TGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQF------QG---------YADKLDVELIVA- 267 (407)
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHH------HH---------HhhcCCCCEEec-
Confidence 3578999965 599999999999999999999999999999975321100 00 001112222211
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCCh--hhhh----hhhhcCCCeEEEEeCCCcchHHHHHHH
Q 009574 257 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--IQLT----LCQVVPLTAAVIVTTPQKLAFIDVAKG 330 (532)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~--~~~~----~~~~~~~d~viiV~~p~~~s~~~~~~~ 330 (532)
.....+...+..+.. .+.||+|||||++.... ..+. .......+.+++|..+. ....++...
T Consensus 268 --------~dp~dL~~al~~l~~---~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag-~~~~d~~~i 335 (407)
T PRK12726 268 --------TSPAELEEAVQYMTY---VNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG-MKSADVMTI 335 (407)
T ss_pred --------CCHHHHHHHHHHHHh---cCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc-ccHHHHHHH
Confidence 011112223333321 15799999999986421 1111 11112234556666553 344455555
Q ss_pred HHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEe
Q 009574 331 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 380 (532)
Q Consensus 331 i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~ 380 (532)
++.+.. +++.|+|+++.+-.++. +.+-.+...+|.|+.+.
T Consensus 336 ~~~f~~--l~i~glI~TKLDET~~~--------G~~Lsv~~~tglPIsyl 375 (407)
T PRK12726 336 LPKLAE--IPIDGFIITKMDETTRI--------GDLYTVMQETNLPVLYM 375 (407)
T ss_pred HHhcCc--CCCCEEEEEcccCCCCc--------cHHHHHHHHHCCCEEEE
Confidence 555554 45679999997644322 56677788888776543
No 91
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=99.06 E-value=3.1e-10 Score=113.84 Aligned_cols=182 Identities=18% Similarity=0.260 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEec-------------------
Q 009574 195 VAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF------------------- 255 (532)
Q Consensus 195 lA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~------------------- 255 (532)
+|+++|..+|++|+||++||+|+++ ++..++|.+-.... ..+. ..+|++.+..
T Consensus 1 ~a~a~a~~~a~~g~~vllv~~Dp~~-~l~~~~~~~~~~~~-----~~v~--~~~~L~~~~id~~~~~~~~~~~~~~~~~~ 72 (284)
T TIGR00345 1 ISCATAIRLAEQGKKVLLVSTDPAH-SLSDVFEQEIGHTP-----TKVT--GVENLSAVEIDPQAALEEYRAKLVEQIKG 72 (284)
T ss_pred CHHHHHHHHHHCCCeEEEEECCCCC-CHHHHhCCccCCCC-----eecc--CCCCceEEEcCHHHHHHHHHHHHHHHHhh
Confidence 4789999999999999999999998 55555553211000 0000 0122222211
Q ss_pred ----CCC----CCcccccCCchHHHHHHHHHHhccc--CCCCEEEEcCCCCCChhhh--------h-----------h--
Q 009574 256 ----GFS----GQGRAIMRGPMVSGVINQLLTTTEW--GELDYLVIDMPPGTGDIQL--------T-----------L-- 304 (532)
Q Consensus 256 ----~~~----~~~~~~~~~~~~~~~l~~ll~~~~~--~~yD~VIIDtpp~~~~~~~--------~-----------~-- 304 (532)
... .......+|......+..+.+.+.. ++||+||+||||.-....+ . .
T Consensus 73 ~~~~~~~~~~~~~~~~~~PG~~E~~~l~~l~~~~~~~~~~yD~iVvDtaPtghtLrlL~lP~~l~~~l~~~~~~~~~~~~ 152 (284)
T TIGR00345 73 NLPDGDMLGDQLEGAALSPGIDEIAAFDEFLKHMTDAENEFDVVIFDTAPTGHTLRLLQLPEVLSSFLEKFIKIRSKLGP 152 (284)
T ss_pred hccccccHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhhccCCEEEECCCChHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 100 0011123444444445555554433 7899999999994211000 0 0
Q ss_pred ----------------------------hhh---cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccC
Q 009574 305 ----------------------------CQV---VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 353 (532)
Q Consensus 305 ----------------------------~~~---~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~ 353 (532)
..+ .....+++|+.|+..++.++.++++.++..+.+..++|+|++....
T Consensus 153 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlV~~pe~~si~e~~rl~~~L~~~g~~~~~lvvN~v~~~~ 232 (284)
T TIGR00345 153 MLKLFMGAGESDEALEKLEELKEQIEAAREILSDPERTSFVLVVIPEKMSLYESERAHKELAKYGIKVDAVIVNQVLPEN 232 (284)
T ss_pred HHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEECCCCCcHHHHHHHHHHHHhCCCCCCEEEEeCCcCCC
Confidence 000 0124579999999999999999999999999999999999986642
Q ss_pred CCccc----cccCCchHHHHHHHhCCCcEEeccCc
Q 009574 354 DGKRY----YPFGRGSGSQVVQQFGIPHLFDLPIR 384 (532)
Q Consensus 354 ~~~~~----~~~~~~~~~~l~~~~g~~~l~~IP~~ 384 (532)
....+ ...+++.++++.+.|+...+..+|+.
T Consensus 233 ~~~~~~~~r~~~q~~~L~~i~~~~~~~~~~~vp~~ 267 (284)
T TIGR00345 233 AQDEFCQARWELQQKYLKEIPEKFADLPVAEVPLQ 267 (284)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC
Confidence 21111 13345677788888876667777753
No 92
>PRK14974 cell division protein FtsY; Provisional
Probab=99.05 E-value=3.8e-09 Score=107.54 Aligned_cols=245 Identities=20% Similarity=0.262 Sum_probs=129.9
Q ss_pred ccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCeeeEEEE
Q 009574 80 TAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVT 156 (532)
Q Consensus 80 ~~~~~v~~~L~~V~DPel~~~I---v~lglv~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~v~ 156 (532)
.++++|.+.|.+++.-.+..|| +...++..++-.-. + . .. .......+.+.+.+++.+..+-+... .++
T Consensus 58 ~~~~~~~~~l~~l~~~Ll~~dv~~~~a~~i~~~~~~~~~-~---~--~~-~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~ 129 (336)
T PRK14974 58 IKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLV-G---K--KV-KRGEDVEEIVKNALKEALLEVLSVGD-LFD 129 (336)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHh-h---c--cC-CCccCHHHHHHHHHHHHHHHHhCCCc-chh
Confidence 5778888888888777776666 33444444322110 0 0 00 01112233455556666654322111 000
Q ss_pred cccCCCcchhhccccccccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccC
Q 009574 157 MSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMN 236 (532)
Q Consensus 157 l~~~p~~~~~~~~~~~~~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~ 236 (532)
+. ..+ ...+.+++|+|+ |..|+||||++.+||..|.+.|++|+++++|.++......+
T Consensus 130 ~~---------~~~--~~~~~~~vi~~~-G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL---------- 187 (336)
T PRK14974 130 LI---------EEI--KSKGKPVVIVFV-GVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQL---------- 187 (336)
T ss_pred hh---------hhh--hccCCCeEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHH----------
Confidence 00 000 011235688888 89999999999999999999999999999998754321100
Q ss_pred CCCCceeecccCCcEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCC-hhhh-hh----hhhcCC
Q 009574 237 PEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQL-TL----CQVVPL 310 (532)
Q Consensus 237 ~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~-~~~~-~~----~~~~~~ 310 (532)
......-|+.+++..... .....+.+.++......||+|||||++... +..+ .. ......
T Consensus 188 -----~~~a~~lgv~v~~~~~g~---------dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~p 253 (336)
T PRK14974 188 -----EEHAERLGVKVIKHKYGA---------DPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKP 253 (336)
T ss_pred -----HHHHHHcCCceecccCCC---------CHHHHHHHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCC
Confidence 001111234444322111 112223333333223689999999998653 2111 10 111234
Q ss_pred CeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEE
Q 009574 311 TAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 379 (532)
Q Consensus 311 d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~ 379 (532)
+.+++|+.... . .+.....+.|.+ .+++.|+|+|+.+-..+. +..-.+....+.|+.+
T Consensus 254 d~~iLVl~a~~-g-~d~~~~a~~f~~-~~~~~giIlTKlD~~~~~--------G~~ls~~~~~~~Pi~~ 311 (336)
T PRK14974 254 DLVIFVGDALA-G-NDAVEQAREFNE-AVGIDGVILTKVDADAKG--------GAALSIAYVIGKPILF 311 (336)
T ss_pred ceEEEeecccc-c-hhHHHHHHHHHh-cCCCCEEEEeeecCCCCc--------cHHHHHHHHHCcCEEE
Confidence 77778877643 2 233333444543 234579999997755432 3455566667776655
No 93
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.05 E-value=2.6e-09 Score=110.54 Aligned_cols=160 Identities=14% Similarity=0.159 Sum_probs=93.4
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHH-HHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTL-AGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 256 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~L-A~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 256 (532)
.++|+|+ |.+|+||||++.+||..+ ...|++|+++|+|.++....+.+ .......++.+.+..
T Consensus 223 ~~vi~lv-GptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQL---------------k~yAe~lgvp~~~~~ 286 (432)
T PRK12724 223 RKVVFFV-GPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQL---------------KRYADTMGMPFYPVK 286 (432)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHH---------------HHHHHhcCCCeeehH
Confidence 3466666 999999999999999876 57899999999999886432210 000111223222200
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCC-h-hhhhh-hhhc------CCCeEEEEeCCCcchHHHH
Q 009574 257 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-D-IQLTL-CQVV------PLTAAVIVTTPQKLAFIDV 327 (532)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~-~-~~~~~-~~~~------~~d~viiV~~p~~~s~~~~ 327 (532)
. +..+.+.+....||+|||||++... + ..+.. ..+. .-...++|+.+.. ...++
T Consensus 287 ------------~----~~~l~~~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~-~~~~~ 349 (432)
T PRK12724 287 ------------D----IKKFKETLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS-SYHHT 349 (432)
T ss_pred ------------H----HHHHHHHHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC-CHHHH
Confidence 0 1122222223789999999966432 1 11111 1111 1124566665544 34556
Q ss_pred HHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEe
Q 009574 328 AKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 380 (532)
Q Consensus 328 ~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~ 380 (532)
...++.+...+ +-|+|+++.+-..+. +.+-.+...++.|+.+.
T Consensus 350 ~~~~~~f~~~~--~~glIlTKLDEt~~~--------G~il~i~~~~~lPI~yl 392 (432)
T PRK12724 350 LTVLKAYESLN--YRRILLTKLDEADFL--------GSFLELADTYSKSFTYL 392 (432)
T ss_pred HHHHHHhcCCC--CCEEEEEcccCCCCc--------cHHHHHHHHHCCCEEEE
Confidence 67777776554 469999996644322 45667777778776543
No 94
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.04 E-value=7.5e-10 Score=98.66 Aligned_cols=69 Identities=25% Similarity=0.494 Sum_probs=65.1
Q ss_pred CCCCCCC-CCccccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCeeeEEEEcccCCCc
Q 009574 92 IIDPDFG-TDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPAR 163 (532)
Q Consensus 92 V~DPel~-~~Iv~lglv~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~v~l~~~p~~ 163 (532)
|.|||++ .||+++|+|++|++++ +.|.|+|++|.++||..+.|+++++++|.++ |+.+++|++.+.|+.
T Consensus 1 v~DPEi~~~sIvdLG~Vr~V~v~g--d~V~VtIt~Ty~gcpa~e~L~~~I~~aL~~~-Gv~~V~V~i~~~p~W 70 (146)
T TIGR02159 1 VPDPEIPVVSVTDLGMVREVDVDG--GGVVVKFTPTYSGCPALEVIRQDIRDAVRAL-GVEVVEVSTSLDPPW 70 (146)
T ss_pred CcCCCCCCCCchhcCCeeEEEEEC--CEEEEEEEeCCCCCchHHHHHHHHHHHHHhc-CCCeEEEeEeeCCCC
Confidence 6899999 8999999999999987 6899999999999999999999999999987 999999999999874
No 95
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.00 E-value=8.2e-09 Score=110.23 Aligned_cols=202 Identities=19% Similarity=0.212 Sum_probs=113.3
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 257 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 257 (532)
|+.|.|++.++|+||||++++|+.+|+++|++|..+..++... +..+.. .+......+++...
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~--------d~~~~~------~~~g~~~~~ld~~~--- 65 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYI--------DPAYHT------AATGRPSRNLDSWM--- 65 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCcc--------cHHHHH------HHhCCCcccCCcee---
Confidence 6789999999999999999999999999999999998854321 000000 00000011222111
Q ss_pred CCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCCh---------hhhhhhhhcCCCeEEEEeCCCcch--HHH
Q 009574 258 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD---------IQLTLCQVVPLTAAVIVTTPQKLA--FID 326 (532)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~---------~~~~~~~~~~~d~viiV~~p~~~s--~~~ 326 (532)
.. ...+.+.+..+. ..||++||....|+-+ ....++.... .-+++|+.....+ +..
T Consensus 66 -------~~----~~~v~~~~~~~~-~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~-~pviLV~~~~~~~~~~a~ 132 (451)
T PRK01077 66 -------MG----EELVRALFARAA-QGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLG-APVVLVVDASGMAQSAAA 132 (451)
T ss_pred -------CC----HHHHHHHHHHhc-ccCCEEEEECCCccccCCccCCCCCCHHHHHHHhC-CCEEEEECCchHHHHHHH
Confidence 11 123444444443 6899999987754421 1122222222 3467777766533 323
Q ss_pred HHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhh-hcccCCCceEEeCCCCH
Q 009574 327 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLS-ASGDSGMPEVAADPCGE 405 (532)
Q Consensus 327 ~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~-~a~~~g~pv~~~~p~s~ 405 (532)
+...+..+. .++++.|+|+|++.... + .....+..+..|+++++.||+++.+. .....|.-- ......
T Consensus 133 l~~~~~~~~-~~i~i~GvI~N~v~~~~----~----~~~l~~~l~~~gipvLG~IP~~~~l~~p~r~lgl~~--~~e~~~ 201 (451)
T PRK01077 133 LVLGFATFD-PDVRIAGVILNRVGSER----H----YQLLREALERCGIPVLGALPRDAALALPERHLGLVQ--ASEHGD 201 (451)
T ss_pred HHHHHHHhC-CCCCEEEEEEECCCChh----H----HHHHHHHHHhcCCCEEEEeeCCcccCCCccccCCCC--cccccc
Confidence 333334442 26889999999974221 1 12234444558999999999998764 223333211 111223
Q ss_pred HHHHHHHHHHHHHHH
Q 009574 406 VANTFQDLGVCVVQQ 420 (532)
Q Consensus 406 ~a~~~~~La~~i~~~ 420 (532)
....+..+++.+.+.
T Consensus 202 ~~~~~~~~~~~~~~~ 216 (451)
T PRK01077 202 LEARLDALADLVEEH 216 (451)
T ss_pred HHHHHHHHHHHHHHc
Confidence 444555566555444
No 96
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.99 E-value=2.2e-09 Score=113.13 Aligned_cols=160 Identities=18% Similarity=0.225 Sum_probs=92.1
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHH--HCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEec
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 255 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA--~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 255 (532)
.++|+|+ |.+||||||++++||..++ +.|++|++||+|+++..... .+.. .....++.+...
T Consensus 221 ~~~i~~v-GptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~e------qL~~---------~a~~~~vp~~~~ 284 (424)
T PRK05703 221 GGVVALV-GPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVE------QLKT---------YAKIMGIPVEVV 284 (424)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHH------HHHH---------HHHHhCCceEcc
Confidence 4688888 7799999999999999998 45899999999998642110 0000 000112222211
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh--h-hhhhhcC-C---CeEEEEeCCCcchHHHHH
Q 009574 256 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--L-TLCQVVP-L---TAAVIVTTPQKLAFIDVA 328 (532)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~--~-~~~~~~~-~---d~viiV~~p~~~s~~~~~ 328 (532)
. .... +...+..+ ..||+||||||+...... . .+..+.. + ..+++|+.. .....++.
T Consensus 285 ~---------~~~~----l~~~l~~~--~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a-~~~~~~l~ 348 (424)
T PRK05703 285 Y---------DPKE----LAKALEQL--RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSA-TTKYEDLK 348 (424)
T ss_pred C---------CHHh----HHHHHHHh--CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEEC-CCCHHHHH
Confidence 0 1111 22222222 579999999987532211 0 1111111 1 234444443 34556777
Q ss_pred HHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEE
Q 009574 329 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 379 (532)
Q Consensus 329 ~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~ 379 (532)
++++.+...++ .++|+++++-... .+.+-.+....+.|+.+
T Consensus 349 ~~~~~f~~~~~--~~vI~TKlDet~~--------~G~i~~~~~~~~lPv~y 389 (424)
T PRK05703 349 DIYKHFSRLPL--DGLIFTKLDETSS--------LGSILSLLIESGLPISY 389 (424)
T ss_pred HHHHHhCCCCC--CEEEEeccccccc--------ccHHHHHHHHHCCCEEE
Confidence 77888876664 5899999664321 13456666777776554
No 97
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=98.99 E-value=1.4e-08 Score=90.19 Aligned_cols=125 Identities=16% Similarity=0.129 Sum_probs=94.0
Q ss_pred EEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCCCCCcc
Q 009574 183 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQGR 262 (532)
Q Consensus 183 v~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~~~~ 262 (532)
|..++| +|||+++..|+..|.++|.+|..+....+
T Consensus 4 ~~~~~~-~Gkt~~~~~l~~~l~~~~~~v~~~kp~~~-------------------------------------------- 38 (134)
T cd03109 4 FGTGTD-IGKTVATAILARALKEKGYRVAPLKPVQT-------------------------------------------- 38 (134)
T ss_pred EeCCCC-cCHHHHHHHHHHHHHHCCCeEEEEecCCC--------------------------------------------
Confidence 444666 99999999999999999999999987764
Q ss_pred cccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCCh------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHc
Q 009574 263 AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSK 336 (532)
Q Consensus 263 ~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~------~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~ 336 (532)
+|++||+.++|+.. .....+.... ..+++|++|+..++.++...++.++.
T Consensus 39 -----------------------~d~vliEGaGg~~~p~~~~~~~~d~~~~~~-~~vllV~~~~~g~i~~a~~~~~~l~~ 94 (134)
T cd03109 39 -----------------------YDFVLVEGAGGLCVPLKEDFTNADVAKELN-LPAILVTSAGLGSINHAFLTIEAARI 94 (134)
T ss_pred -----------------------CCEEEEECCCccccCCCCCCCHHHHHHHhC-CCEEEEEcCCCCcHhHHHHHHHHHHh
Confidence 47777777765431 1111211221 24789999999899988899999999
Q ss_pred CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEecc
Q 009574 337 LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLP 382 (532)
Q Consensus 337 ~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP 382 (532)
.++.+.|++.|++..... .+ ....+.+.+.++.+.++.||
T Consensus 95 ~g~~i~gvi~N~~~~~~~-----~~-~~~~~~i~~~~gip~LG~IP 134 (134)
T cd03109 95 KGIILNGVLGNVIVEKEG-----LA-TLNVETIERLTGIPVLGIVP 134 (134)
T ss_pred cCCceeEEEEccCCCccc-----hh-hhhHHHHHHhcCCCEEEeCC
Confidence 999999999999654321 11 14578889999999999887
No 98
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.97 E-value=9.6e-09 Score=97.17 Aligned_cols=165 Identities=19% Similarity=0.221 Sum_probs=97.9
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 258 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~ 258 (532)
++|+++ |-.||||||+++.||..+..+|++|.+|-+|.++.... ++.-.....-|+.+......
T Consensus 2 ~vi~lv-GptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~---------------eQL~~~a~~l~vp~~~~~~~ 65 (196)
T PF00448_consen 2 KVIALV-GPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAV---------------EQLKTYAEILGVPFYVARTE 65 (196)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHH---------------HHHHHHHHHHTEEEEESSTT
T ss_pred EEEEEE-CCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHH---------------HHHHHHHHHhccccchhhcc
Confidence 688999 77899999999999999998899999999999874311 00000111124444442211
Q ss_pred CCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCC-hhhh-----hhhhhcCCCeEEEEeCCCcchHHHHHHHHH
Q 009574 259 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQL-----TLCQVVPLTAAVIVTTPQKLAFIDVAKGVR 332 (532)
Q Consensus 259 ~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~-~~~~-----~~~~~~~~d~viiV~~p~~~s~~~~~~~i~ 332 (532)
. .....+.+.++....++||+|+||||+... +... .......-+.+++|+.+... ..++....+
T Consensus 66 ~---------~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~-~~~~~~~~~ 135 (196)
T PF00448_consen 66 S---------DPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG-QEDLEQALA 135 (196)
T ss_dssp S---------CHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG-GHHHHHHHH
T ss_pred h---------hhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC-hHHHHHHHH
Confidence 1 122334444444434789999999987332 1111 12222345677777776553 345556666
Q ss_pred HHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEE
Q 009574 333 MFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 379 (532)
Q Consensus 333 ~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~ 379 (532)
..+..++ -++|+++.+-..+. +.+-.+....+.|+.+
T Consensus 136 ~~~~~~~--~~lIlTKlDet~~~--------G~~l~~~~~~~~Pi~~ 172 (196)
T PF00448_consen 136 FYEAFGI--DGLILTKLDETARL--------GALLSLAYESGLPISY 172 (196)
T ss_dssp HHHHSST--CEEEEESTTSSSTT--------HHHHHHHHHHTSEEEE
T ss_pred HhhcccC--ceEEEEeecCCCCc--------ccceeHHHHhCCCeEE
Confidence 6666555 48999996543321 4566677777765443
No 99
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.97 E-value=7.6e-09 Score=109.58 Aligned_cols=160 Identities=19% Similarity=0.192 Sum_probs=90.1
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHC--CCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEe
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVS 254 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~--G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~ 254 (532)
.+++|+|+ |.+|+||||++.+||..+++. |++|.+|++|.++......+ ... ....++.+..
T Consensus 349 ~G~vIaLV-GPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQL------k~y---------a~iLgv~v~~ 412 (559)
T PRK12727 349 RGGVIALV-GPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQL------HSY---------GRQLGIAVHE 412 (559)
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHH------HHh---------hcccCceeEe
Confidence 35799999 779999999999999998875 58999999999774321100 000 0001222211
Q ss_pred cCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChh-hhh-----hhhhcCCCeEEEEeCCCcchHHHHH
Q 009574 255 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-QLT-----LCQVVPLTAAVIVTTPQKLAFIDVA 328 (532)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~-~~~-----~~~~~~~d~viiV~~p~~~s~~~~~ 328 (532)
. ... ..+...+..+ .+||+|||||++..... ... +..... ...++|+... .+..++.
T Consensus 413 a---------~d~----~~L~~aL~~l--~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~-~a~lLVLpAt-ss~~Dl~ 475 (559)
T PRK12727 413 A---------DSA----ESLLDLLERL--RDYKLVLIDTAGMGQRDRALAAQLNWLRAARQ-VTSLLVLPAN-AHFSDLD 475 (559)
T ss_pred c---------CcH----HHHHHHHHHh--ccCCEEEecCCCcchhhHHHHHHHHHHHHhhc-CCcEEEEECC-CChhHHH
Confidence 0 011 1233333333 57999999999854211 100 001111 2223333322 3455666
Q ss_pred HHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEE
Q 009574 329 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 379 (532)
Q Consensus 329 ~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~ 379 (532)
..++.+... +..|+|+|+++...+. +..-.+....+.|+.+
T Consensus 476 eii~~f~~~--~~~gvILTKlDEt~~l--------G~aLsv~~~~~LPI~y 516 (559)
T PRK12727 476 EVVRRFAHA--KPQGVVLTKLDETGRF--------GSALSVVVDHQMPITW 516 (559)
T ss_pred HHHHHHHhh--CCeEEEEecCcCccch--------hHHHHHHHHhCCCEEE
Confidence 677777664 4589999996643321 3455556666765544
No 100
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.86 E-value=5.8e-08 Score=98.29 Aligned_cols=153 Identities=18% Similarity=0.214 Sum_probs=88.3
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCC-CCCCcccccccCCCCCceeecccCCcEEEe
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT-MVSPENRLLEMNPEKRTIIPTEYLGVKLVS 254 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~-~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~ 254 (532)
+.+++|.|+ |++|+||||++.+|+..+.+.|++|.+|++|++.+.... +++....+.. ....+++.+.+
T Consensus 32 ~~~~~i~i~-G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 101 (300)
T TIGR00750 32 GNAHRVGIT-GTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQR---------LATDPGAFIRS 101 (300)
T ss_pred CCceEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhh---------cccCCCceeee
Confidence 346788888 999999999999999999999999999999997654322 1221111100 01123444444
Q ss_pred cCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHH
Q 009574 255 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMF 334 (532)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l 334 (532)
.+.... +.+ .......+++.+....||+|||||++ .+...... ...+|.++++..|... .++......+
T Consensus 102 ~~~~~~----~~~--~~~~~~~~~~~l~~~g~D~viidT~G-~~~~e~~i--~~~aD~i~vv~~~~~~--~el~~~~~~l 170 (300)
T TIGR00750 102 MPTRGH----LGG--LSQATRELILLLDAAGYDVIIVETVG-VGQSEVDI--ANMADTFVVVTIPGTG--DDLQGIKAGL 170 (300)
T ss_pred cCcccc----ccc--hhHHHHHHHHHHHhCCCCEEEEeCCC-CchhhhHH--HHhhceEEEEecCCcc--HHHHHHHHHH
Confidence 322110 000 11223333333334799999999985 55443333 3345778877665532 3333333323
Q ss_pred HcCCCCEEEEEEeccccc
Q 009574 335 SKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 335 ~~~~~~~~gvV~N~~~~~ 352 (532)
. +.+ .-+|+|+++..
T Consensus 171 ~--~~~-~ivv~NK~Dl~ 185 (300)
T TIGR00750 171 M--EIA-DIYVVNKADGE 185 (300)
T ss_pred h--hhc-cEEEEEccccc
Confidence 2 223 35888997643
No 101
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=98.83 E-value=1.1e-07 Score=92.57 Aligned_cols=192 Identities=17% Similarity=0.107 Sum_probs=109.5
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCC-CCCcc-c--c-c---ccCCCCCceeecccC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM-VSPEN-R--L-L---EMNPEKRTIIPTEYL 248 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~-lg~~~-~--~-~---~~~~~~~~i~~~~~~ 248 (532)
||+.|.|++.-.|+|||+++..|+..|.++|++|..+--=..+ .... -+..+ . + . ......+.+.|
T Consensus 1 m~~~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~KPi~~g--~~~~~~~~~~~D~~~l~~~~~~~~~~~~~~p---- 74 (231)
T PRK12374 1 MLKRFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPVAKG--SKETPEGLRNKDALVLQSVSSIELPYEAVNP---- 74 (231)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECccccC--CccCCCCCchHHHHHHHHhcCCCCCHHhccC----
Confidence 5678999999999999999999999999999999987433222 1100 00000 0 0 0 00000000100
Q ss_pred CcEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh-----hhhhhhcCCCeEEEEeCCCcch
Q 009574 249 GVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-----LTLCQVVPLTAAVIVTTPQKLA 323 (532)
Q Consensus 249 ~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~-----~~~~~~~~~d~viiV~~p~~~s 323 (532)
..+....... ..-..-......+.+ +.+. .+||+|||++.+|+.... ..-.....-.-+++|+....-+
T Consensus 75 --~~~~~~~a~~--~~~~~i~~~~i~~~~-~~l~-~~~D~VlVEGaGgl~~p~~~~~~~~d~~~~~~~pvilV~~~~lg~ 148 (231)
T PRK12374 75 --IALSEEESSV--AHSCPINYTLMSNGL-ANLS-EKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGC 148 (231)
T ss_pred --eecCCCcChH--HcCCcCCHHHHHHHH-HHHH-hhCCEEEEECCCCcceeccCcccHHHHHHHhCCCEEEEECCCcCh
Confidence 0111111000 000001112223333 3344 799999999998543211 1001111224467777666667
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchh
Q 009574 324 FIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPT 386 (532)
Q Consensus 324 ~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~ 386 (532)
+..+.-.++.+...++++.|+|+|++..... ...+..+.+.+..+.+.++.||+.+.
T Consensus 149 in~~lLt~~~l~~~~~~~~gvV~N~~~~~~~------~~~~~~~~l~~~~~~~~lg~iP~~~~ 205 (231)
T PRK12374 149 INHALLTAQAIANDGLPLIGWVANRINPGLA------HYAEIIDVLGKKLPAPLIGELPYLPR 205 (231)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEEeCccCchh------hhhhHHHHHHHhcCCCEEEEeCCCCC
Confidence 7777778888888899999999999753221 11234567777788999999998643
No 102
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.83 E-value=9.7e-09 Score=101.96 Aligned_cols=169 Identities=18% Similarity=0.177 Sum_probs=103.9
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEec
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 255 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 255 (532)
+.+.+|.|+ |-.|+||||+...||.+|.++|++|++.-+|..+... .++.-.....-|+.+|..
T Consensus 137 ~~p~Vil~v-GVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaA---------------iEQL~~w~er~gv~vI~~ 200 (340)
T COG0552 137 KKPFVILFV-GVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAA---------------IEQLEVWGERLGVPVISG 200 (340)
T ss_pred CCcEEEEEE-ecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHH---------------HHHHHHHHHHhCCeEEcc
Confidence 346799999 8899999999999999999999999999999876331 111111122357778864
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhc------------CCCeEEEEeCCCcch
Q 009574 256 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVV------------PLTAAVIVTTPQKLA 323 (532)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~------------~~d~viiV~~p~~~s 323 (532)
... .+.....-..++......||+|||||.+.+..-.-.+..+. +-..++++.....
T Consensus 201 ~~G---------~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAtt-- 269 (340)
T COG0552 201 KEG---------ADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATT-- 269 (340)
T ss_pred CCC---------CCcHHHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEccc--
Confidence 321 12223344444444458999999999886532211111110 1123555544321
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEe
Q 009574 324 FIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 380 (532)
Q Consensus 324 ~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~ 380 (532)
-.+.....+.|++. +++.|+|+++++...++ +.+-.+...+++|+.+.
T Consensus 270 Gqnal~QAk~F~ea-v~l~GiIlTKlDgtAKG--------G~il~I~~~l~~PI~fi 317 (340)
T COG0552 270 GQNALSQAKIFNEA-VGLDGIILTKLDGTAKG--------GIILSIAYELGIPIKFI 317 (340)
T ss_pred ChhHHHHHHHHHHh-cCCceEEEEecccCCCc--------ceeeeHHHHhCCCEEEE
Confidence 12222333455542 45789999998866655 35567888888876653
No 103
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.82 E-value=7e-08 Score=100.14 Aligned_cols=160 Identities=13% Similarity=0.131 Sum_probs=93.6
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHH----CCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEE
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAG----MGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLV 253 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~----~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl 253 (532)
.++|+++ |..||||||+++.||..+.. .|++|++|++|.++......+.. ....-|+.+.
T Consensus 174 ~~vi~lv-GptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~---------------~a~~lgvpv~ 237 (388)
T PRK12723 174 KRVFILV-GPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQT---------------YGDIMGIPVK 237 (388)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHH---------------HhhcCCcceE
Confidence 4577777 88899999999999999874 58999999999987543221100 0000122221
Q ss_pred ecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhh------hhhhcCCC-eEEEEeCCCcchHHH
Q 009574 254 SFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT------LCQVVPLT-AAVIVTTPQKLAFID 326 (532)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~------~~~~~~~d-~viiV~~p~~~s~~~ 326 (532)
... . ...+...+... .+||+|||||++........ .......+ .+++|+.++.. ..+
T Consensus 238 ~~~------------~-~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~-~~~ 301 (388)
T PRK12723 238 AIE------------S-FKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK-TSD 301 (388)
T ss_pred eeC------------c-HHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC-HHH
Confidence 100 0 11233333332 68999999999854311111 11111112 56777666543 455
Q ss_pred HHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEE
Q 009574 327 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 379 (532)
Q Consensus 327 ~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~ 379 (532)
+.+.++.+... +.-++|+++.+-.... +.+-.+...++.|+.+
T Consensus 302 ~~~~~~~~~~~--~~~~~I~TKlDet~~~--------G~~l~~~~~~~~Pi~y 344 (388)
T PRK12723 302 VKEIFHQFSPF--SYKTVIFTKLDETTCV--------GNLISLIYEMRKEVSY 344 (388)
T ss_pred HHHHHHHhcCC--CCCEEEEEeccCCCcc--------hHHHHHHHHHCCCEEE
Confidence 55666666544 4569999996644322 4566777777776654
No 104
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=6.5e-09 Score=103.87 Aligned_cols=224 Identities=13% Similarity=0.125 Sum_probs=126.8
Q ss_pred cHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCeeeEEEEc
Q 009574 81 AENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTM 157 (532)
Q Consensus 81 ~~~~v~~~L~~V~DPel~~~I---v~lglv~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~v~l 157 (532)
.++.+-..|++|+...|..|| +...+..+|+-.-. +.--.++--....+.+.+..+|..+-.
T Consensus 24 ~~~~l~~~L~eI~~ALLesDV~~~lV~~l~~nir~~i~-------~~~~~~G~nk~r~i~~~vf~eL~kl~d-------- 88 (483)
T KOG0780|consen 24 DETALNTMLKEICRALLESDVNPRLVKELRENIRKIIN-------LEKLASGVNKRRIIQKAVFDELVKLLD-------- 88 (483)
T ss_pred hHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc-------hhhhccccCHHHHHHHHHHHHHHHHhC--------
Confidence 556677788888888777666 33333333332111 111122333556777777777766522
Q ss_pred ccCCCcchhhccccccccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCC
Q 009574 158 SAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNP 237 (532)
Q Consensus 158 ~~~p~~~~~~~~~~~~~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~ 237 (532)
|.... .+..++.+.||.|+ +-.|+||||++..||+++.++|+||+||-+|..+...-.
T Consensus 89 ---p~~~~-----~~~~K~kpsVimfV-GLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfD------------- 146 (483)
T KOG0780|consen 89 ---PGKSA-----LQPKKGKPSVIMFV-GLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFD------------- 146 (483)
T ss_pred ---CCCcc-----cccccCCCcEEEEE-eccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHH-------------
Confidence 11111 01223445699999 888999999999999999999999999999998754211
Q ss_pred CCCceeecccCCcEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh------hhhhhhcCCC
Q 009574 238 EKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ------LTLCQVVPLT 311 (532)
Q Consensus 238 ~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~------~~~~~~~~~d 311 (532)
+........++.+..++... .......+-.+....+.||+||+||+...-... ........-|
T Consensus 147 --QLkqnA~k~~iP~ygsyte~---------dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd 215 (483)
T KOG0780|consen 147 --QLKQNATKARVPFYGSYTEA---------DPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPD 215 (483)
T ss_pred --HHHHHhHhhCCeeEeccccc---------chHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCC
Confidence 11111122233333322111 122233333344445899999999987532111 1111122347
Q ss_pred eEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCC
Q 009574 312 AAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADG 355 (532)
Q Consensus 312 ~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~ 355 (532)
.+++|.....- ..+....+.|++ .+.+-++|+++.+...++
T Consensus 216 ~vi~VmDasiG--Qaae~Qa~aFk~-~vdvg~vIlTKlDGhakG 256 (483)
T KOG0780|consen 216 EIIFVMDASIG--QAAEAQARAFKE-TVDVGAVILTKLDGHAKG 256 (483)
T ss_pred eEEEEEecccc--HhHHHHHHHHHH-hhccceEEEEecccCCCC
Confidence 88888876543 122233344444 356679999997655543
No 105
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=98.79 E-value=1.8e-07 Score=98.90 Aligned_cols=89 Identities=12% Similarity=0.219 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcE----------EeccCchhhhhccc
Q 009574 323 AFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL----------FDLPIRPTLSASGD 392 (532)
Q Consensus 323 s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l----------~~IP~~~~i~~a~~ 392 (532)
.+.++.+.++.+++++++ ..|.+|+...+...+ .+.+++++++.|++.+ +.+|+...+.++..
T Consensus 357 Gl~NL~RHIenvr~FGvP-vVVAINKFd~DTe~E------i~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~ 429 (557)
T PRK13505 357 GFANLERHIENIRKFGVP-VVVAINKFVTDTDAE------IAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELIE 429 (557)
T ss_pred HHHHHHHHHHHHHHcCCC-EEEEEeCCCCCCHHH------HHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHHh
Confidence 456788889999999999 457789965544211 1457788888999998 88999999988887
Q ss_pred CCCc--eEEeCCCCHHHHHHHHHHHHHH
Q 009574 393 SGMP--EVAADPCGEVANTFQDLGVCVV 418 (532)
Q Consensus 393 ~g~p--v~~~~p~s~~a~~~~~La~~i~ 418 (532)
.+.+ -+.|..+.+..+.++.+|++|.
T Consensus 430 ~~~s~f~~lY~~d~sl~eKIe~IAkkIY 457 (557)
T PRK13505 430 EGESNFKPLYDDEDSLEEKIEKIATKIY 457 (557)
T ss_pred cCCCCCceecCCCCcHHHHHHHHHHHcc
Confidence 6554 2346667889999999999874
No 106
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=98.79 E-value=6.2e-08 Score=96.18 Aligned_cols=136 Identities=15% Similarity=0.126 Sum_probs=75.9
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 257 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 257 (532)
|++|+|++.| |+||||++.+|+..|+++| +|.+|+.|+.+.. . .-| .+...................+ ++-
T Consensus 1 M~~i~i~G~~-gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~~~-~-~~g-~Ds~~~~~aGa~~v~~~s~~~~-~~~--- 71 (274)
T PRK14493 1 MKVLSIVGYK-ATGKTTLVERLVDRLSGRG-RVGTVKHMDTERL-N-PDG-TDTGRHFDAGADVVYGLTDGEW-VAS--- 71 (274)
T ss_pred CcEEEEECCC-CCCHHHHHHHHHHHHHhCC-CEEEEEEcCCCcC-C-CCC-CCcHHHHHCCCcEEEEecCCeE-EEE---
Confidence 6799999775 9999999999999999999 8999999985421 1 000 0000000000000000000111 110
Q ss_pred CCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCC-eEEEEeCCCcchHHHHHHHHHHHHc
Q 009574 258 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLT-AAVIVTTPQKLAFIDVAKGVRMFSK 336 (532)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d-~viiV~~p~~~s~~~~~~~i~~l~~ 336 (532)
..... +.+++..+. ..+|+||||+++......+........| .++++..|+... +..+++.+++
T Consensus 72 -------~~~~~----l~~~l~~l~-~~~D~vlVEG~k~~~~pki~v~~~~~~~~~~l~p~~~s~~d---~~~lve~~~~ 136 (274)
T PRK14493 72 -------GRDRS----LDDALDDLA-PGMDYAVVEGFKDSRLPKVVLGDMDADSDVVARAPTAADLD---TEDLVAALES 136 (274)
T ss_pred -------ecCCC----HHHHHHhhC-cCCCEEEEECCCCCCCCEEEEEecccCCcEEEecCCCCccC---HHHHHHHHHh
Confidence 01112 344444433 5799999999997653333333344455 567777777776 4444444444
Q ss_pred C
Q 009574 337 L 337 (532)
Q Consensus 337 ~ 337 (532)
.
T Consensus 137 ~ 137 (274)
T PRK14493 137 Q 137 (274)
T ss_pred c
Confidence 3
No 107
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=98.78 E-value=3.8e-08 Score=93.52 Aligned_cols=188 Identities=18% Similarity=0.211 Sum_probs=107.3
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccccc-ccCCCCCceeecccCCcEEEecCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL-EMNPEKRTIIPTEYLGVKLVSFGF 257 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~-~~~~~~~~i~~~~~~~l~vl~~~~ 257 (532)
|.|.|++.-.|+|||+++..|+.+|.++|.||..+--=.++..... +.... ....... +........+....
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~KPi~~~~~~d~----d~~~~~~~~~~~~---~~~~~~~~~~~~~~ 73 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALRRRGIKVGYFKPIQTGPEDDE----DAELIRELFGLSE---PPDDPSPYTFDEPA 73 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEEEEEEESCCCSS----HHHHHHHHCCTCC---CHHHHECEEESSSS
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEEeeeEecCCCCc----hHHHHHHHhCCCc---ccccccccccCccc
Confidence 4688999999999999999999999999999997653222211000 00000 0000000 00000001111000
Q ss_pred CCCcccccCCchHHHHHHHH-HHhcccCCCCEEEEcCCCCCCh------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHH
Q 009574 258 SGQGRAIMRGPMVSGVINQL-LTTTEWGELDYLVIDMPPGTGD------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKG 330 (532)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~l-l~~~~~~~yD~VIIDtpp~~~~------~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~ 330 (532)
. .............+.++ .+.+. ..+|++||+...+... ....++.... ..+++|+.....++..+...
T Consensus 74 ~--~~~~~~~~~~~~~~~~i~~~~l~-~~~D~vlVEGag~~~~~~~~~~~n~dia~~L~-a~vIlV~~~~~g~i~~~l~~ 149 (199)
T PF13500_consen 74 S--PHLAAELEGVDIDLERIIYKELA-EEYDVVLVEGAGGLMVPIFSGDLNADIAKALG-APVILVASGRLGTINHTLLT 149 (199)
T ss_dssp ---HHHHHHHHT----HHHHHHHHCH-TTTCEEEEEESSSTTSECCTTEEHHHHHHHHT--EEEEEEESSTTHHHHHHHH
T ss_pred C--HHHHhhccCCcccHHHHHHHHHh-hcCCEEEEeCCcccCcccccChHHHHHHHHcC-CCEEEEeCCCCCCHHHHHHH
Confidence 0 00000000000113333 24444 7999999998876542 1122222222 34778888888899999999
Q ss_pred HHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhh
Q 009574 331 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLS 388 (532)
Q Consensus 331 i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~ 388 (532)
++.++..|.++.|+|+|++... +..+.+.+..++++++.||+++.+.
T Consensus 150 ~~~~~~~g~~v~GvI~N~~~~~-----------~~~~~l~~~~~i~vlg~iP~~~~L~ 196 (199)
T PF13500_consen 150 IEALKQRGIRVLGVILNRVPEP-----------ENLEALREKSGIPVLGVIPEDPDLS 196 (199)
T ss_dssp HHHHHCTTS-EEEEEEEECTCC-----------HHHHHHHHHHCCEECE---SSTT--
T ss_pred HHHHHhcCCCEEEEEEECCCCH-----------HHHHHHHHhCCCCEEEECCCCcccc
Confidence 9999999999999999995321 4688899999999999999988764
No 108
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=98.75 E-value=2e-07 Score=104.51 Aligned_cols=178 Identities=17% Similarity=0.193 Sum_probs=102.2
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 256 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 256 (532)
|||.|.|++...|+|||+++..|+.+|.++|+||..+--..+++.. . .... ..+..+
T Consensus 1 m~k~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~p~~-------~---------~~~~-------~~~~~~ 57 (684)
T PRK05632 1 MSRSIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQPPLT-------M---------SEVE-------ALLASG 57 (684)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccCCCC-------H---------HHHH-------HHHhcc
Confidence 5778999999999999999999999999999999998754443100 0 0000 000000
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh------hhhhhhcCCCeEEEEeCCCcchHHH----
Q 009574 257 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ------LTLCQVVPLTAAVIVTTPQKLAFID---- 326 (532)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~------~~~~~~~~~d~viiV~~p~~~s~~~---- 326 (532)
........+.+.+..+. .+||+||||++.+.+... ..++.. --+.+++|+.++..++.+
T Consensus 58 ---------~~~~~~~~I~~~~~~l~-~~~D~VLIEGa~~~~~~~~~~~~na~iA~~-L~~pVILV~~~~~~si~d~~~~ 126 (684)
T PRK05632 58 ---------QLDELLEEIVARYHALA-KDCDVVLVEGLDPTRKHPFEFSLNAEIAKN-LGAEVVLVSSGGNDTPEELAER 126 (684)
T ss_pred ---------CChHHHHHHHHHHHHhc-cCCCEEEEeCcCCCCcCcccCchHHHHHHH-hCCCEEEEECCCCCChHHHHHH
Confidence 00011122222233333 789999999987554321 111111 135788899888777544
Q ss_pred HHHHHHHHH-cCCCCEEEEEEec--ccccCCCcccccc----C-----CchHHHHHHHhCCCcEEeccCchhhh
Q 009574 327 VAKGVRMFS-KLKVPCIAVVENM--CHFDADGKRYYPF----G-----RGSGSQVVQQFGIPHLFDLPIRPTLS 388 (532)
Q Consensus 327 ~~~~i~~l~-~~~~~~~gvV~N~--~~~~~~~~~~~~~----~-----~~~~~~l~~~~g~~~l~~IP~~~~i~ 388 (532)
+.-..+.+. ..+.++.|+|+|+ +...........+ . ........+..++++++.||+++.+.
T Consensus 127 i~~~~~~l~~~~~~~v~GVIvNr~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~LG~IP~d~~L~ 200 (684)
T PRK05632 127 IELAASSFGGAKNANILGVIINKLNAPVDEQGRTRPDLSEIFDDSSKANVDPSKLFASSPLPLLGVVPWSPDLI 200 (684)
T ss_pred HHHHHHHhccCCCCcEEEEEEECCCCCHHHHHHHHHHHHhhhccccccchhcchhhhcCCCceEEEccCccccC
Confidence 334444444 4568899999999 4322111000000 0 00001122345788999999998654
No 109
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=98.73 E-value=1.8e-07 Score=100.25 Aligned_cols=197 Identities=18% Similarity=0.172 Sum_probs=102.5
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC-CCCCCCCCCCCccc---ccc----cCCCCCceeeccc--C--
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV-YGPSLPTMVSPENR---LLE----MNPEKRTIIPTEY--L-- 248 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~-~~~s~~~~lg~~~~---~~~----~~~~~~~i~~~~~--~-- 248 (532)
|.|++.-.+||||++++.|+..|.++|++|..+-.=. ..++....-+.+.. ... .......+.|... +
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp~~~~~~s~~~~~~~e~~~a~~~qa~a~~~~~~~~~nPv~lk~~~~ 80 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILARRGYRVAPFKSQNMSLNSFVTKEGGEIAIAQATQALAAGIEPSVHMNPILLKPKGN 80 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECCcccccCccccCCCchhHHHHHHHHHhCCCCchhccCCEEeCcCCC
Confidence 4688899999999999999999999999999776531 11111100011110 000 0000111111110 0
Q ss_pred -CcEEEecCCCCC--cccccCC---chHHHHHHHHHHhcccCCCCEEEEcCCCCCChh--------hhhhhhhcCCCeEE
Q 009574 249 -GVKLVSFGFSGQ--GRAIMRG---PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAV 314 (532)
Q Consensus 249 -~l~vl~~~~~~~--~~~~~~~---~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~--------~~~~~~~~~~d~vi 314 (532)
...++-.+.... ....... ......+.+.+..+. .+||+||||+++|+.+. ...++....++ ++
T Consensus 81 ~~s~~i~~g~~~~~~~a~~~~~~~~~~~~~~i~~~~~~l~-~~~D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l~ap-VI 158 (475)
T TIGR00313 81 FTSQVIVHGRAVGDMNYQEYYKNKVDFFLKAIKESLEILA-REYDYVVIEGAGSPAEINLLKRDLANMRIAELANAD-AI 158 (475)
T ss_pred CcCcEEEcCcccCcCCHHHHhhhhhHHHHHHHHHHHHHHH-hcCCEEEEECCCCccccccCcCCchHHHHHHHhCCC-EE
Confidence 011221121100 0000000 112233344444443 68999999999876431 12222233333 56
Q ss_pred EEeCCCcchH-HHHHHHHHHHHcC-CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCch
Q 009574 315 IVTTPQKLAF-IDVAKGVRMFSKL-KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 385 (532)
Q Consensus 315 iV~~p~~~s~-~~~~~~i~~l~~~-~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~ 385 (532)
+|+.....+. ..+...++.++.. +..+.|+|+|++..+. ...++..+.+.+..|+|+++.+|+++
T Consensus 159 LV~d~~~g~~~a~i~gt~~~l~~~~~~~i~GvIlNrv~~~~------~~~~~~~~~l~e~~gipvLG~ip~~~ 225 (475)
T TIGR00313 159 LVADIDRGGVFASIYGTLKLLPENWRKLIKGIVINKFRGNV------DVLKSGIEKLEELTGIPVLGVLPYDE 225 (475)
T ss_pred EEEeCCccHHHHHHHHHHHHhChhhcCceEEEEEeccCCcH------HHHHHHHHHHHHhhCCCEEEEecCCC
Confidence 6666665533 3444455555543 2578999999965321 11224556667778999999998864
No 110
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.69 E-value=1.3e-07 Score=104.81 Aligned_cols=163 Identities=17% Similarity=0.186 Sum_probs=97.4
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHH-HCC-CcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEec
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMG-ARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 255 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA-~~G-~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 255 (532)
.++|+|+ |-.|+||||+...||..+. ..| ++|.+|++|.++...... + .......++.+...
T Consensus 185 g~Vi~lV-GpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQ------L---------~~~a~~~gvpv~~~ 248 (767)
T PRK14723 185 GGVLALV-GPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQ------L---------RIYGRILGVPVHAV 248 (767)
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHH------H---------HHHHHhCCCCcccc
Confidence 4699999 8899999999999999885 566 699999999876332110 0 00001112211110
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCC-hhhh-h----hhhhcCCCeEEEEeCCCcchHHHHHH
Q 009574 256 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQL-T----LCQVVPLTAAVIVTTPQKLAFIDVAK 329 (532)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~-~~~~-~----~~~~~~~d~viiV~~p~~~s~~~~~~ 329 (532)
... ..+.+.++.+ .+||+|||||++-.. +..+ . +.....-+.+++|+.... ...++..
T Consensus 249 ---------~~~----~~l~~al~~~--~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~-~~~~l~~ 312 (767)
T PRK14723 249 ---------KDA----ADLRFALAAL--GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAAS-HGDTLNE 312 (767)
T ss_pred ---------CCH----HHHHHHHHHh--cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCC-cHHHHHH
Confidence 011 1233444433 588999999988332 1111 1 111122356677776653 4556677
Q ss_pred HHHHHHcC-CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEe
Q 009574 330 GVRMFSKL-KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 380 (532)
Q Consensus 330 ~i~~l~~~-~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~ 380 (532)
+++.|+.. +.++.|+|+++.+-..+. +.+-.+...++.|+.+.
T Consensus 313 i~~~f~~~~~~~i~glIlTKLDEt~~~--------G~iL~i~~~~~lPI~yi 356 (767)
T PRK14723 313 VVHAYRHGAGEDVDGCIITKLDEATHL--------GPALDTVIRHRLPVHYV 356 (767)
T ss_pred HHHHHhhcccCCCCEEEEeccCCCCCc--------cHHHHHHHHHCCCeEEE
Confidence 77777754 346789999996644322 45667777777776543
No 111
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=98.66 E-value=6.9e-07 Score=85.26 Aligned_cols=199 Identities=17% Similarity=0.125 Sum_probs=114.4
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc-ccccCCCCCceeecccCCcEEEec
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR-LLEMNPEKRTIIPTEYLGVKLVSF 255 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~-~~~~~~~~~~i~~~~~~~l~vl~~ 255 (532)
||+.+.|++.--|||||.++..|+.+|..+|++|...--=..+..-..- +.+.. +....... ......+.+.+..
T Consensus 1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KPVqsG~~~~~~-~~D~~~l~~~~~~~---~~~~~~~py~f~~ 76 (223)
T COG0132 1 MMKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKPVQTGSEETAE-NSDALVLQRLSGLD---LSYELINPYRFKE 76 (223)
T ss_pred CCceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEECceeeCCCCCCC-CchHHHHHHhcCCC---cccccccceecCC
Confidence 6889999999999999999999999999999999876432211110000 00000 00000000 0001112222221
Q ss_pred CCCCCcccccCC-chHHHHHHHHHHhcccCCCCEEEEcCCCCCChh------hhhhhhhcCCCeEEEEeCCCcchHHHHH
Q 009574 256 GFSGQGRAIMRG-PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI------QLTLCQVVPLTAAVIVTTPQKLAFIDVA 328 (532)
Q Consensus 256 ~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~------~~~~~~~~~~d~viiV~~p~~~s~~~~~ 328 (532)
+....-.....+ ......+..-+..+. ..||+|||-..+|+--. ....... -..-+++|+....-++..+.
T Consensus 77 P~sPhlAa~~eg~~I~~~~l~~~l~~l~-~~~d~vlVEGAGGl~vPl~~~~~~~D~~~~-~~lpvILV~~~~LGtINHtl 154 (223)
T COG0132 77 PLSPHLAAELEGRTIDLEKLSQGLRQLL-KKYDLVLVEGAGGLLVPLTEEYTFADLAVQ-LQLPVILVVGIKLGTINHTL 154 (223)
T ss_pred CCCcHHHHhhcCCcccHHHHHHHHHhhh-cccCEEEEeCCCceeeecCCcccHHHHHHH-cCCCEEEEecCCccHHHHHH
Confidence 111100000000 011222333333333 69999999999886311 1111111 12457888888899999999
Q ss_pred HHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhh
Q 009574 329 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTL 387 (532)
Q Consensus 329 ~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i 387 (532)
-.++.++..|+++.|+|+|......... ......+.+..+.|+++.+|+.+..
T Consensus 155 Lt~eal~~~gl~l~G~I~n~~~~~~~~~------~~~~~~l~~~~~~p~~g~~p~~~~~ 207 (223)
T COG0132 155 LTVEALRARGLPLAGWVANGINPELDHY------AEINATLLKRIGAPLLGIIPYLPES 207 (223)
T ss_pred HHHHHHHHCCCCEEEEEEccCCCchhHH------HHHHHHHHHhcCCCccccccCCccc
Confidence 9999999999999999999855332211 1122357778899999999985543
No 112
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.65 E-value=2.8e-07 Score=91.14 Aligned_cols=164 Identities=15% Similarity=0.159 Sum_probs=97.3
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 257 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 257 (532)
+.+|+|. |++|+||||+...+|..+..+|++|.+|++|.++...... +. ......++.+....
T Consensus 75 ~~~i~~~-G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~q------l~---------~~~~~~~~~~~~~~- 137 (270)
T PRK06731 75 VQTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQ------LQ---------DYVKTIGFEVIAVR- 137 (270)
T ss_pred CCEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHH------HH---------HHhhhcCceEEecC-
Confidence 4588888 7799999999999999999889999999999875221100 00 00001123333210
Q ss_pred CCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCC--hhhh----hhhhhcCCCeEEEEeCCCcchHHHHHHHH
Q 009574 258 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQL----TLCQVVPLTAAVIVTTPQKLAFIDVAKGV 331 (532)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~--~~~~----~~~~~~~~d~viiV~~p~~~s~~~~~~~i 331 (532)
....+...++.+.. ..+||+||||||+... ...+ .......-+.+++|+.+.. ...++...+
T Consensus 138 --------~~~~l~~~l~~l~~---~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~-~~~d~~~~~ 205 (270)
T PRK06731 138 --------DEAAMTRALTYFKE---EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM-KSKDMIEII 205 (270)
T ss_pred --------CHHHHHHHHHHHHh---cCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCcc-CHHHHHHHH
Confidence 11112223333321 2579999999998652 1111 1111223356677776543 234555667
Q ss_pred HHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEe
Q 009574 332 RMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 380 (532)
Q Consensus 332 ~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~ 380 (532)
+.|+. +++-|+|+++.+-..+. +.+-.+....+.|+.+.
T Consensus 206 ~~f~~--~~~~~~I~TKlDet~~~--------G~~l~~~~~~~~Pi~~i 244 (270)
T PRK06731 206 TNFKD--IHIDGIVFTKFDETASS--------GELLKIPAVSSAPIVLM 244 (270)
T ss_pred HHhCC--CCCCEEEEEeecCCCCc--------cHHHHHHHHHCcCEEEE
Confidence 77766 55679999996643322 45667777788776653
No 113
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.64 E-value=7.1e-07 Score=87.30 Aligned_cols=152 Identities=16% Similarity=0.206 Sum_probs=98.8
Q ss_pred cccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCC-CCCCcccccccCCCCCceeecccCCcE
Q 009574 173 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT-MVSPENRLLEMNPEKRTIIPTEYLGVK 251 (532)
Q Consensus 173 ~~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~-~lg~~~~~~~~~~~~~~i~~~~~~~l~ 251 (532)
...+.+.+|.|+ |-+|+||||+.-.|...|.++|+||.+|-.||..+-+.- ++|..-.... ....+|++
T Consensus 46 p~tG~a~viGIT-G~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~---------~~~~~~vF 115 (323)
T COG1703 46 PRTGNAHVIGIT-GVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQR---------LAVDPGVF 115 (323)
T ss_pred hcCCCCcEEEec-CCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHh---------hccCCCeE
Confidence 345667899999 899999999999999999999999999999997654322 2332211111 11246777
Q ss_pred EEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCC-CCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHH
Q 009574 252 LVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPP-GTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAK 329 (532)
Q Consensus 252 vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp-~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~ 329 (532)
+-|++..+.- ..+.....+.+..+....||+|||-|-+ |.++... ...+|.+++|+.|..- .+..++.
T Consensus 116 iRs~~srG~l------GGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I----~~~aDt~~~v~~pg~GD~~Q~iK~ 185 (323)
T COG1703 116 IRSSPSRGTL------GGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDI----ANMADTFLVVMIPGAGDDLQGIKA 185 (323)
T ss_pred EeecCCCccc------hhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHH----hhhcceEEEEecCCCCcHHHHHHh
Confidence 7775543321 1123334444444444799999999976 5555443 3356999999999765 3444443
Q ss_pred HHHHHHcCCCCEEEEEEeccc
Q 009574 330 GVRMFSKLKVPCIAVVENMCH 350 (532)
Q Consensus 330 ~i~~l~~~~~~~~gvV~N~~~ 350 (532)
.+-.+.. -+|+|+.+
T Consensus 186 GimEiaD------i~vINKaD 200 (323)
T COG1703 186 GIMEIAD------IIVINKAD 200 (323)
T ss_pred hhhhhhh------eeeEeccC
Confidence 3322222 47889965
No 114
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.64 E-value=5.6e-07 Score=91.52 Aligned_cols=152 Identities=14% Similarity=0.130 Sum_probs=90.4
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCC-CCCCcccccccCCCCCceeecccCCcEEEe
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT-MVSPENRLLEMNPEKRTIIPTEYLGVKLVS 254 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~-~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~ 254 (532)
+.+.+|.|+ |-.|+||||++..|+..|...|++|.+|..|++.+.+.. ++|....... ....+++.+.+
T Consensus 54 ~~~~~igi~-G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~---------~~~~~~~~~r~ 123 (332)
T PRK09435 54 GNALRIGIT-GVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMER---------LSRHPNAFIRP 123 (332)
T ss_pred CCcEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHh---------hcCCCCeEEEe
Confidence 456788888 779999999999999999999999999999997653221 2221111100 01223444444
Q ss_pred cCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeC-CCcchHHHHHHHHHH
Q 009574 255 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTT-PQKLAFIDVAKGVRM 333 (532)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~-p~~~s~~~~~~~i~~ 333 (532)
.+.... + ......+.+.+..+....||+|||||++-- .....+ ...+|.+++|+. +....+...... .
T Consensus 124 ~~~~~~----l--~~~a~~~~~~~~~~~~~g~d~viieT~Gv~-qs~~~i--~~~aD~vlvv~~p~~gd~iq~~k~g--i 192 (332)
T PRK09435 124 SPSSGT----L--GGVARKTRETMLLCEAAGYDVILVETVGVG-QSETAV--AGMVDFFLLLQLPGAGDELQGIKKG--I 192 (332)
T ss_pred cCCccc----c--cchHHHHHHHHHHHhccCCCEEEEECCCCc-cchhHH--HHhCCEEEEEecCCchHHHHHHHhh--h
Confidence 332111 0 112334444444444478999999998833 222222 335788888886 444455444431 1
Q ss_pred HHcCCCCEEEEEEeccccc
Q 009574 334 FSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 334 l~~~~~~~~gvV~N~~~~~ 352 (532)
++... -+|+|+++..
T Consensus 193 ~E~aD----IiVVNKaDl~ 207 (332)
T PRK09435 193 MELAD----LIVINKADGD 207 (332)
T ss_pred hhhhh----eEEeehhccc
Confidence 22211 4899997743
No 115
>PRK00784 cobyric acid synthase; Provisional
Probab=98.62 E-value=6.6e-07 Score=96.58 Aligned_cols=200 Identities=18% Similarity=0.180 Sum_probs=102.2
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCC---cc-c--ccc----cCCCCCceeecc
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSP---EN-R--LLE----MNPEKRTIIPTE 246 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~---~~-~--~~~----~~~~~~~i~~~~ 246 (532)
||+.|.|++...|||||++++.|+.+|.++|++|..+-. ++.+.....+. +. + ... .......+.|..
T Consensus 1 m~~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp--v~~~~~~~~~~dg~~~~Da~~l~~~~~~~~~~~~i~P~~ 78 (488)
T PRK00784 1 MAKALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA--QNMSLNSAVTADGGEIGRAQALQAEAAGVEPSVDMNPVL 78 (488)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc--hhccccceECCCCCeeHHHHHHHHHhCCCCchhccCCEE
Confidence 578899999999999999999999999999999987643 22111111010 00 0 000 000000111100
Q ss_pred ----cCCcE-EEecCCC--CCcc--cccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCC-------h-hhhhhhhhcC
Q 009574 247 ----YLGVK-LVSFGFS--GQGR--AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-------D-IQLTLCQVVP 309 (532)
Q Consensus 247 ----~~~l~-vl~~~~~--~~~~--~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~-------~-~~~~~~~~~~ 309 (532)
.+.+. .+-.+.. ..+. ...........+.+.+..+. ..||++||+...|.- + ....++....
T Consensus 79 ~~~~sp~~a~~~~~g~~~~~l~a~~~~~~~~~~~~~I~~~~~~l~-~~~D~vIVEGaGg~~~~~L~~~~~~~~dlak~l~ 157 (488)
T PRK00784 79 LKPQSDRGSQVIVQGKPVGNMDARDYHDYKPRLLEAVLESLDRLA-AEYDVVVVEGAGSPAEINLRDRDIANMGFAEAAD 157 (488)
T ss_pred ecCCCCCcceEEEcCccccccCHHHHhhcchhhHHHHHHHHHHHH-hcCCEEEEECCCCccccCcccCCchhHHHHHHcC
Confidence 00000 0000000 0000 00001122233344444443 689999999774332 1 0112222222
Q ss_pred CCeEEEEeCCCcc-hHHHHHHHHHHHHc-CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchh
Q 009574 310 LTAAVIVTTPQKL-AFIDVAKGVRMFSK-LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPT 386 (532)
Q Consensus 310 ~d~viiV~~p~~~-s~~~~~~~i~~l~~-~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~ 386 (532)
.-+++|+..... ++..+...++.+.. .+.++.|+|+|++..+. ..-++..+.+.+..++|+++.||+++.
T Consensus 158 -~PVILV~~~~~g~~~~~i~~~~~~l~~~~~~~i~GvI~N~v~~~~------~~~~~~~~~l~~~~gipvLG~iP~~~~ 229 (488)
T PRK00784 158 -APVILVADIDRGGVFASLVGTLALLPPEERARVKGFIINKFRGDI------SLLEPGLDWLEELTGVPVLGVLPYLDD 229 (488)
T ss_pred -CCEEEEEeCCcCcHHHHHHHHHHhcChhhCCcEEEEEEECCCCCH------HHHHHHHHHHHHhcCCCEEEEcCCCcC
Confidence 235566665444 45555555556553 35689999999976321 111234555777789999999998764
No 116
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.61 E-value=7.3e-07 Score=91.88 Aligned_cols=163 Identities=15% Similarity=0.178 Sum_probs=91.6
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHH-HCC-CcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEec
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMG-ARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 255 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA-~~G-~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 255 (532)
..+++|+ |-.|+||||++..||..+. +.| ++|.+|.+|.+...... .+ ......-|+.+...
T Consensus 137 g~ii~lv-GptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~E------qL---------~~~a~~~gv~~~~~ 200 (374)
T PRK14722 137 GGVFALM-GPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHE------QL---------RIFGKILGVPVHAV 200 (374)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHH------HH---------HHHHHHcCCceEec
Confidence 4688887 8999999999999999876 456 69999999998642110 00 00001112222211
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCC--hhhh-hhhhh---cCCCeEEEEeCCCcchHHHHHH
Q 009574 256 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQL-TLCQV---VPLTAAVIVTTPQKLAFIDVAK 329 (532)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~--~~~~-~~~~~---~~~d~viiV~~p~~~s~~~~~~ 329 (532)
. ........+.++ .++|+|||||++-.. .... ....+ ......++|+.+.. ....+..
T Consensus 201 ~---------~~~~l~~~l~~l------~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts-~~~~l~e 264 (374)
T PRK14722 201 K---------DGGDLQLALAEL------RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATS-HGDTLNE 264 (374)
T ss_pred C---------CcccHHHHHHHh------cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCcc-ChHHHHH
Confidence 1 111122233333 688999999987331 1111 11111 12234566666554 3444555
Q ss_pred HHHHHHcCC-------CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEe
Q 009574 330 GVRMFSKLK-------VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 380 (532)
Q Consensus 330 ~i~~l~~~~-------~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~ 380 (532)
.++.+.... .++.|+|+++.+-..+ .+.+-.+....+.|+.+.
T Consensus 265 vi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~--------~G~~l~~~~~~~lPi~yv 314 (374)
T PRK14722 265 VVQAYRSAAGQPKAALPDLAGCILTKLDEASN--------LGGVLDTVIRYKLPVHYV 314 (374)
T ss_pred HHHHHHHhhcccccccCCCCEEEEeccccCCC--------ccHHHHHHHHHCcCeEEE
Confidence 566665442 2367999999664332 245666667777765543
No 117
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.51 E-value=1.4e-07 Score=94.43 Aligned_cols=42 Identities=29% Similarity=0.444 Sum_probs=37.5
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHC-C-CcEEEEEcCCCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-G-ARVGIFDADVYGP 220 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~-G-~rVllID~D~~~~ 220 (532)
.++|+|+ |.+||||||++++||..++.+ | ++|.+|++|.+..
T Consensus 194 ~~vi~~v-GptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~ 237 (282)
T TIGR03499 194 GGVIALV-GPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI 237 (282)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch
Confidence 5689998 669999999999999999976 5 9999999999874
No 118
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.50 E-value=9.8e-07 Score=93.73 Aligned_cols=160 Identities=17% Similarity=0.170 Sum_probs=88.4
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHH-HCC-CcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEec
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMG-ARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 255 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA-~~G-~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 255 (532)
++||+|+ |-.||||||++..||..+. +.| ++|.+|++|.++.... ..+. ......|+.+...
T Consensus 256 g~Vi~Lv-GpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~------EQLr---------~~AeilGVpv~~~ 319 (484)
T PRK06995 256 GGVFALM-GPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGH------EQLR---------IYGKILGVPVHAV 319 (484)
T ss_pred CcEEEEE-CCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHH------HHHH---------HHHHHhCCCeecc
Confidence 4699999 8899999999999999886 556 5999999999763210 0000 0000111111110
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCC-hhhh-hhhh-hcC---CCeEEEEeCCCcchHHHHHH
Q 009574 256 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQL-TLCQ-VVP---LTAAVIVTTPQKLAFIDVAK 329 (532)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~-~~~~-~~~~-~~~---~d~viiV~~p~~~s~~~~~~ 329 (532)
. ... .....+. .+ .++|+++|||++... +... .... +.. -...++|+... .....+.+
T Consensus 320 ~---------~~~---Dl~~aL~-~L--~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt-~~~~~l~~ 383 (484)
T PRK06995 320 K---------DAA---DLRLALS-EL--RNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNAT-SHGDTLNE 383 (484)
T ss_pred C---------Cch---hHHHHHH-hc--cCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCC-CcHHHHHH
Confidence 0 000 1111222 22 678999999965221 1110 1111 111 12245555443 33455666
Q ss_pred HHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEE
Q 009574 330 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 379 (532)
Q Consensus 330 ~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~ 379 (532)
.++.++..+ +.|+|+|+.+..... +.+-.+...++.|+.+
T Consensus 384 i~~~f~~~~--~~g~IlTKlDet~~~--------G~~l~i~~~~~lPI~y 423 (484)
T PRK06995 384 VVQAYRGPG--LAGCILTKLDEAASL--------GGALDVVIRYKLPLHY 423 (484)
T ss_pred HHHHhccCC--CCEEEEeCCCCcccc--------hHHHHHHHHHCCCeEE
Confidence 777776644 569999996644322 4566777777776654
No 119
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.50 E-value=2.2e-06 Score=91.47 Aligned_cols=198 Identities=20% Similarity=0.216 Sum_probs=104.9
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCCCCC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQ 260 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~~ 260 (532)
|.|++...|+||||+++.|+.+|+++|++|..+-.-+ . . .+..+.. .+......+++.
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~---d---~--~D~~~~~------~~~g~~~~~ld~-------- 59 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGP---D---Y--IDPMFHT------QATGRPSRNLDS-------- 59 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCC---C---C--CCHHHHH------HHhCCchhhCCc--------
Confidence 6788999999999999999999999999999987521 1 0 0100000 000000011110
Q ss_pred cccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCCh---------hhhhhhhhcCCCeEEEEeCCCcc--hHHHHHH
Q 009574 261 GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD---------IQLTLCQVVPLTAAVIVTTPQKL--AFIDVAK 329 (532)
Q Consensus 261 ~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~---------~~~~~~~~~~~d~viiV~~p~~~--s~~~~~~ 329 (532)
.... ...+.+.+..+. ..+|++||....|+-+ ....++.... .-+++|+..... ++..+..
T Consensus 60 --~~~~----~~~i~~~~~~~~-~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~-~pVILV~~~~~~~~t~~al~~ 131 (449)
T TIGR00379 60 --FFMS----EAQIQECFHRHS-KGTDYSIIEGVRGLYDGISAITDYGSTASVAKALD-APIVLVMNCQRLSRSAAAIVL 131 (449)
T ss_pred --ccCC----HHHHHHHHHHhc-ccCCEEEEecCCccccCCCCCCCCccHHHHHHHhC-CCEEEEECCchHHHHHHHHHH
Confidence 0011 233444444443 6899999998755421 1122222221 235555554421 1122222
Q ss_pred HHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhh-cccCC-CceEEeCCCCHHH
Q 009574 330 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSA-SGDSG-MPEVAADPCGEVA 407 (532)
Q Consensus 330 ~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~-a~~~g-~pv~~~~p~s~~a 407 (532)
....+ ..++++.|+|+|++..+. ++ ....+.+.+..++|+++.||+++.+.- ....| .|..+ .....
T Consensus 132 ~~~~~-~~~i~i~GvIlN~v~~~~----~~---~~~~~~i~~~~gipvLG~IP~~~~l~~p~rhLgLv~~~e---~~~~~ 200 (449)
T TIGR00379 132 GYRSF-DPGVKLKGVILNRVGSER----HL---EKLKIAVEPLRGIPILGVIPRQQDLKVPDRHLGLVPAGE---REIIQ 200 (449)
T ss_pred HHHhh-CCCCCEEEEEEECCCCHH----HH---HHHHHHHHHhCCCCEEEEecCccccCCCCcccCCCChhh---hhhHH
Confidence 22222 347889999999975321 10 123445556679999999999986542 12122 23333 23344
Q ss_pred HHHHHHHHHHHH
Q 009574 408 NTFQDLGVCVVQ 419 (532)
Q Consensus 408 ~~~~~La~~i~~ 419 (532)
..+..+++.+.+
T Consensus 201 ~~~~~~~~~~~~ 212 (449)
T TIGR00379 201 QIFDWLAEVVEK 212 (449)
T ss_pred HHHHHHHHHHHh
Confidence 455666655544
No 120
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.42 E-value=1e-06 Score=85.19 Aligned_cols=149 Identities=18% Similarity=0.224 Sum_probs=85.3
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCC-CCCCCcccccccCCCCCceeecccCCcEEEe
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP-TMVSPENRLLEMNPEKRTIIPTEYLGVKLVS 254 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~-~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~ 254 (532)
+...+|.|+ |-+|+||||+.-.|+..+.+.|+||.++-.||..+-+. .+||-.-+.. .....+|+++=|
T Consensus 27 g~a~~iGiT-G~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~---------~~~~d~~vfIRS 96 (266)
T PF03308_consen 27 GRAHVIGIT-GPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQ---------ELSRDPGVFIRS 96 (266)
T ss_dssp T-SEEEEEE-E-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCH---------HHHTSTTEEEEE
T ss_pred CCceEEEee-CCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhc---------CcCCCCCEEEee
Confidence 346799998 88999999999999999999999999999999765443 2344221111 112346888877
Q ss_pred cCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCC-CCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHH
Q 009574 255 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPP-GTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVR 332 (532)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp-~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~i~ 332 (532)
+...+.- ..+.....+.+..+..-.||+|||-|-. |.++. .+ ...+|.+++|+.|..- .+...+..+-
T Consensus 97 ~atRG~l------GGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~--~I--~~~aD~~v~v~~Pg~GD~iQ~~KaGim 166 (266)
T PF03308_consen 97 MATRGSL------GGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEV--DI--ADMADTVVLVLVPGLGDEIQAIKAGIM 166 (266)
T ss_dssp E---SSH------HHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHH--HH--HTTSSEEEEEEESSTCCCCCTB-TTHH
T ss_pred cCcCCCC------CCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHH--HH--HHhcCeEEEEecCCCccHHHHHhhhhh
Confidence 6543321 1123334444444444799999999976 44433 33 3456999999999754 2333332222
Q ss_pred HHHcCCCCEEEEEEeccc
Q 009574 333 MFSKLKVPCIAVVENMCH 350 (532)
Q Consensus 333 ~l~~~~~~~~gvV~N~~~ 350 (532)
.+. .-+|+|+.+
T Consensus 167 Eia------Di~vVNKaD 178 (266)
T PF03308_consen 167 EIA------DIFVVNKAD 178 (266)
T ss_dssp HH-------SEEEEE--S
T ss_pred hhc------cEEEEeCCC
Confidence 221 247889965
No 121
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=98.35 E-value=9.3e-06 Score=83.48 Aligned_cols=168 Identities=22% Similarity=0.270 Sum_probs=97.4
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC--CCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY--GPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 257 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~--~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 257 (532)
-|.+.+...|+||||++..|..+|+++|++|--+-.-|. .|+.+.. +.-....|||..
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDYIDP~~H~~----------------atG~~srNLD~~---- 61 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDYIDPGYHTA----------------ATGRPSRNLDSW---- 61 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCccCchhhhH----------------hhCCccCCCchh----
Confidence 467888999999999999999999999988865444331 1111110 000111233221
Q ss_pred CCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChh---------hhhhhhhcCCCeEEEEeCCCcchH--HH
Q 009574 258 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI---------QLTLCQVVPLTAAVIVTTPQKLAF--ID 326 (532)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~---------~~~~~~~~~~d~viiV~~p~~~s~--~~ 326 (532)
++. ...++++..... ++.|+.||-.--|+-|- +..++.+.. .-+++|++....+. ..
T Consensus 62 ------mm~----~~~v~~~f~~~~-~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~-~PVvLVid~~~~s~S~AA 129 (451)
T COG1797 62 ------MMG----EEGVRALFARAA-ADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLG-APVVLVVDASGLSRSVAA 129 (451)
T ss_pred ------hcC----HHHHHHHHHHhc-CCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhC-CCEEEEEeCcchhHHHHH
Confidence 111 234555544433 78888888554433221 111111211 23677887776644 34
Q ss_pred HHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHH-hCCCcEEeccCchhhh
Q 009574 327 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQ-FGIPHLFDLPIRPTLS 388 (532)
Q Consensus 327 ~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~~l~~IP~~~~i~ 388 (532)
+.+..+.++. ++++.|||+||+.... ++ +.+++..+. .|+++++.||.++++.
T Consensus 130 iv~G~~~fdp-~v~iaGVIlNrVgser----H~----~llr~Ale~~~gv~vlG~lpr~~~l~ 183 (451)
T COG1797 130 IVKGFKHFDP-DVNIAGVILNRVGSER----HY----ELLRDALEEYTGVPVLGYLPRDDDLE 183 (451)
T ss_pred HHHHHHhcCC-CCceEEEEEecCCCHH----HH----HHHHHHhhhcCCCcEEEEecCCcccC
Confidence 4444454443 5778999999976433 21 345555554 7899999999998643
No 122
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=5.4e-06 Score=85.38 Aligned_cols=155 Identities=19% Similarity=0.155 Sum_probs=97.9
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCc-ccccccCCCCCceeecccCCcEEEe
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE-NRLLEMNPEKRTIIPTEYLGVKLVS 254 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~-~~~~~~~~~~~~i~~~~~~~l~vl~ 254 (532)
+.+-+|+|+ |-.||||||.-+.+|+||-+.++||++.-+|..++..-.-|+.. .++.. ....-+.+..
T Consensus 376 krPYVi~fv-GVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~----------l~~~~v~lfe 444 (587)
T KOG0781|consen 376 KRPYVISFV-GVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSA----------LHGTMVELFE 444 (587)
T ss_pred CCCeEEEEE-eecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHH----------hccchhHHHh
Confidence 456789999 88999999999999999999999999999999875421111100 00000 0001112222
Q ss_pred cCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhh------hhhhcCCCeEEEEeCC--CcchHHH
Q 009574 255 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT------LCQVVPLTAAVIVTTP--QKLAFID 326 (532)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~------~~~~~~~d~viiV~~p--~~~s~~~ 326 (532)
.|+.. ......++.++......||+|+|||.+.+-+..-. +.....-|.++.|... +..++..
T Consensus 445 kGYgk---------d~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q 515 (587)
T KOG0781|consen 445 KGYGK---------DAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQ 515 (587)
T ss_pred hhcCC---------ChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHH
Confidence 23222 23455666777666799999999998865432211 1223345788888654 4456677
Q ss_pred HHHHHHHHHcCCC--CEEEEEEeccc
Q 009574 327 VAKGVRMFSKLKV--PCIAVVENMCH 350 (532)
Q Consensus 327 ~~~~i~~l~~~~~--~~~gvV~N~~~ 350 (532)
+...-+.+..... .+.|+|+++++
T Consensus 516 ~~~fn~al~~~~~~r~id~~~ltk~d 541 (587)
T KOG0781|consen 516 LKKFNRALADHSTPRLIDGILLTKFD 541 (587)
T ss_pred HHHHHHHHhcCCCccccceEEEEecc
Confidence 7777666766542 26799999854
No 123
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.09 E-value=3.9e-05 Score=78.82 Aligned_cols=160 Identities=18% Similarity=0.239 Sum_probs=90.1
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHH--HCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEec
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 255 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA--~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 255 (532)
.++|+++ |--||||||+-+.||+.+. ...+||.+|-+|.++-... ..+.. ....-|+.+.-
T Consensus 203 ~~vi~LV-GPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~------EQLk~---------Ya~im~vp~~v- 265 (407)
T COG1419 203 KRVIALV-GPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAV------EQLKT---------YADIMGVPLEV- 265 (407)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHH------HHHHH---------HHHHhCCceEE-
Confidence 7899999 7789999999999999999 4468999999999873211 00000 00001222211
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCC-Chhhh-h----hhhhcCCCeEEEEeCCCcchHHHHHH
Q 009574 256 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGT-GDIQL-T----LCQVVPLTAAVIVTTPQKLAFIDVAK 329 (532)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~-~~~~~-~----~~~~~~~d~viiV~~p~~~s~~~~~~ 329 (532)
......+...+..+ .+||+|+|||.+-. -+... . .........+.+|+..+ ....+++.
T Consensus 266 --------v~~~~el~~ai~~l------~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat-~K~~dlke 330 (407)
T COG1419 266 --------VYSPKELAEAIEAL------RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSAT-TKYEDLKE 330 (407)
T ss_pred --------ecCHHHHHHHHHHh------hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecC-cchHHHHH
Confidence 11222233334444 68899999997622 22111 0 00011122334444433 34567788
Q ss_pred HHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEE
Q 009574 330 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 379 (532)
Q Consensus 330 ~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~ 379 (532)
+++.|..++ +.|+|+++.+-... -+.+-.+....+.|+.+
T Consensus 331 i~~~f~~~~--i~~~I~TKlDET~s--------~G~~~s~~~e~~~PV~Y 370 (407)
T COG1419 331 IIKQFSLFP--IDGLIFTKLDETTS--------LGNLFSLMYETRLPVSY 370 (407)
T ss_pred HHHHhccCC--cceeEEEcccccCc--------hhHHHHHHHHhCCCeEE
Confidence 888887755 46999999553221 13444555555555443
No 124
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=97.97 E-value=0.00012 Score=78.07 Aligned_cols=169 Identities=12% Similarity=0.046 Sum_probs=96.1
Q ss_pred ccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEE
Q 009574 174 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLV 253 (532)
Q Consensus 174 ~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl 253 (532)
..+.|+.|.|++...|+||||+|+.|+.+|.++ |..+-..+ . ..+ +. +.++.+
T Consensus 234 ~~~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~---v~~fK~Gp---D----------~id-------~~----p~~~~~ 286 (476)
T PRK06278 234 ERNKPKGIILLATGSESGKTFLTTSIAGKLRGK---VFVAKIGP---D----------VRD-------IV----PSLYLL 286 (476)
T ss_pred hhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC---eEEEcCCC---C----------hhh-------cC----Ccceec
Confidence 344467899999999999999999999999975 55554321 1 000 00 011111
Q ss_pred e---cCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh---------hhhhhhcCCCeEEEEeCCCc
Q 009574 254 S---FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ---------LTLCQVVPLTAAVIVTTPQK 321 (532)
Q Consensus 254 ~---~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~---------~~~~~~~~~d~viiV~~p~~ 321 (532)
+ ++............+....++.+. ...+|++||....|+-+.. ..++.... .-+++|+....
T Consensus 287 ~~~~sp~~a~n~~~d~~~~~~~~~~~~~----~~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~-~PVILV~~~~~ 361 (476)
T PRK06278 287 REKMTKYNSIKIGDRGWSDVEEFLEFVK----NSDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALG-FPVYIVSSCSK 361 (476)
T ss_pred ccccCChHHHhhcCCcccCHHHHHHHHH----hcCCCEEEEECCCCcccccCCCCccccHHHHHHHhC-CCEEEEEcCCC
Confidence 0 000000000000112223344321 2468999999987654421 11222221 34788888877
Q ss_pred chHHHHHH----HHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEecc
Q 009574 322 LAFIDVAK----GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLP 382 (532)
Q Consensus 322 ~s~~~~~~----~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP 382 (532)
.++..+.. ..++++..++++.|+|+|++.... + .+..+++.+..|+|+++.++
T Consensus 362 g~i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~~~~----~----~~~~~~~le~~gvpVLG~~~ 418 (476)
T PRK06278 362 SGIEGAFVESMAYYSLLKKMGVKVEGIILNKVYNME----I----FEKVKKIAENSNINLIGVGK 418 (476)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCcHH----H----HHHHHHHHHhcCCCEEEecc
Confidence 77544433 345566668899999999976311 1 13456667778999999944
No 125
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.96 E-value=6.8e-05 Score=79.10 Aligned_cols=169 Identities=15% Similarity=0.126 Sum_probs=95.3
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 257 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 257 (532)
|+.|.|++...|+||||++..|+.+|.++|.+|-.+-..+..- +..... .+......|++-.
T Consensus 1 m~~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~Gpd~i--------D~~~~~------~~~g~~~~nld~~---- 62 (433)
T PRK13896 1 MKGFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKAGPDFI--------DPSHHE------AVAGRPSRTLDPW---- 62 (433)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEeeCCCCC--------CHHHHH------HHhCCCcccCChh----
Confidence 4468889999999999999999999999999997776533210 000000 0000000122100
Q ss_pred CCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh----hhhhhhcCCCeEEEEeCCCcch--HHHHHHHH
Q 009574 258 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ----LTLCQVVPLTAAVIVTTPQKLA--FIDVAKGV 331 (532)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~----~~~~~~~~~d~viiV~~p~~~s--~~~~~~~i 331 (532)
.. + ...+.+... +..+|++||....|+-+.. ...+.... --+++|+.....+ +..+...+
T Consensus 63 ------~~-~---~~~i~~~~~---~~~~d~~vIEG~gGl~dg~~~s~adla~~l~-~PviLVv~~~~g~~s~aa~l~g~ 128 (433)
T PRK13896 63 ------LS-G---EDGMRRNYY---RGEGDICVVEGVMGLYDGDVSSTAMVAEALD-LPVVLVVDAKAGMESVAATALGF 128 (433)
T ss_pred ------hC-C---HHHHHHHHH---hhcCCEEEEECCCccccCCCCCHHHHHHHHC-CCEEEEEcCcccHHHHHHHHHHH
Confidence 01 1 122333322 2458999999988763321 11111111 2467787776664 44434444
Q ss_pred HHHHc---CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhh
Q 009574 332 RMFSK---LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTL 387 (532)
Q Consensus 332 ~~l~~---~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i 387 (532)
..+.. .++++.|||+|++.... + .+.+++..+. +++.++.||..+.+
T Consensus 129 ~~~~~~~~~~~~i~GvIlN~~~~~~----h----~~~l~~~~~~-~i~vlG~lP~~~~~ 178 (433)
T PRK13896 129 RAYADRIGRDIDVAGVIAQRAHGGR----H----ADGIRDALPD-ELTYFGRIPPRDDL 178 (433)
T ss_pred HHHHHhccCCCcEEEEEEECCCcHH----H----HHHHHHhhhh-cCceeEecccCCCC
Confidence 33433 37899999999965321 1 0122333233 68899999988764
No 126
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.77 E-value=0.00017 Score=71.90 Aligned_cols=97 Identities=21% Similarity=0.236 Sum_probs=66.9
Q ss_pred ccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCcccccc
Q 009574 282 EWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPF 361 (532)
Q Consensus 282 ~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~ 361 (532)
.|+.+++.|||||+...........+..+|.+++|+.+...........++.+...+.+.+ +++|+++.....
T Consensus 60 ~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~i-ivvNK~D~~~~~------ 132 (268)
T cd04170 60 EWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRI-IFINKMDRERAD------ 132 (268)
T ss_pred EECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCccCCCC------
Confidence 3578899999999854332223334567899999999887666667777888888888755 688997644321
Q ss_pred CCchHHHHHHHhCCCcE-EeccCch
Q 009574 362 GRGSGSQVVQQFGIPHL-FDLPIRP 385 (532)
Q Consensus 362 ~~~~~~~l~~~~g~~~l-~~IP~~~ 385 (532)
.....+++++.++.+.+ ..+|...
T Consensus 133 ~~~~~~~l~~~~~~~~~~~~ip~~~ 157 (268)
T cd04170 133 FDKTLAALQEAFGRPVVPLQLPIGE 157 (268)
T ss_pred HHHHHHHHHHHhCCCeEEEEecccC
Confidence 12456788888887655 4577654
No 127
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.0006 Score=71.60 Aligned_cols=160 Identities=14% Similarity=0.124 Sum_probs=89.0
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHH-HC-CCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEe
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLA-GM-GARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVS 254 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA-~~-G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~ 254 (532)
.+.+|+++ |..|+||||+..-||..+. .. +.+|.++-.|.+.-.... +.......-|+.+..
T Consensus 190 ~g~vi~lv-GpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalE---------------QL~~~a~ilGvp~~~ 253 (420)
T PRK14721 190 QGGVYALI-GPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHE---------------QLRIYGKLLGVSVRS 253 (420)
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHH---------------HHHHHHHHcCCceec
Confidence 35699999 9999999999999998654 33 478899888876532100 000000011222221
Q ss_pred cCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChh--h--hhhhhhc---CCCeEEEEeCCCcchHHHH
Q 009574 255 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--Q--LTLCQVV---PLTAAVIVTTPQKLAFIDV 327 (532)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~--~--~~~~~~~---~~d~viiV~~p~~~s~~~~ 327 (532)
.. ..... ...+..+ .++|+|+|||+ |.... . ..+..+. .....++|+... ....++
T Consensus 254 v~---------~~~dl----~~al~~l--~~~d~VLIDTa-Grsqrd~~~~~~l~~l~~~~~~~~~~LVl~at-~~~~~~ 316 (420)
T PRK14721 254 IK---------DIADL----QLMLHEL--RGKHMVLIDTV-GMSQRDQMLAEQIAMLSQCGTQVKHLLLLNAT-SSGDTL 316 (420)
T ss_pred CC---------CHHHH----HHHHHHh--cCCCEEEecCC-CCCcchHHHHHHHHHHhccCCCceEEEEEcCC-CCHHHH
Confidence 00 11111 1222222 68999999996 44431 1 1111111 123456666554 345566
Q ss_pred HHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEE
Q 009574 328 AKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 379 (532)
Q Consensus 328 ~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~ 379 (532)
..++..+... ++.|+|+++.+-... -+.+-.+...++.|+.+
T Consensus 317 ~~~~~~f~~~--~~~~~I~TKlDEt~~--------~G~~l~~~~~~~lPi~y 358 (420)
T PRK14721 317 DEVISAYQGH--GIHGCIITKVDEAAS--------LGIALDAVIRRKLVLHY 358 (420)
T ss_pred HHHHHHhcCC--CCCEEEEEeeeCCCC--------ccHHHHHHHHhCCCEEE
Confidence 6777777654 457999999664332 14566667777766554
No 128
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.64 E-value=0.00074 Score=65.94 Aligned_cols=93 Identities=15% Similarity=0.157 Sum_probs=63.2
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009574 283 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 362 (532)
Q Consensus 283 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 362 (532)
|+++.+.++|||+...........+..+|.+++|+.....-.......++.++..+.+.+ +++|+.+..... +
T Consensus 61 ~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~i-ivvNK~D~~~a~-----~- 133 (237)
T cd04168 61 WEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTI-IFVNKIDRAGAD-----L- 133 (237)
T ss_pred ECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECccccCCC-----H-
Confidence 467889999998744332223334556799999988766544566777888888888865 788997644311 1
Q ss_pred CchHHHHHHHhCCCcEE-ecc
Q 009574 363 RGSGSQVVQQFGIPHLF-DLP 382 (532)
Q Consensus 363 ~~~~~~l~~~~g~~~l~-~IP 382 (532)
...++++++.++...+. .+|
T Consensus 134 ~~~~~~i~~~~~~~~~~~~~p 154 (237)
T cd04168 134 EKVYQEIKEKLSSDIVPMQKV 154 (237)
T ss_pred HHHHHHHHHHHCCCeEEEECC
Confidence 35788899999866543 355
No 129
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.58 E-value=0.0036 Score=62.33 Aligned_cols=96 Identities=19% Similarity=0.114 Sum_probs=64.3
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009574 283 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 362 (532)
Q Consensus 283 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 362 (532)
|+.+.+.+||||+...........+..+|.+++|+.....-.....+.++.+...+.+.+ +++|+.+..... .
T Consensus 61 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~~a~------~ 133 (270)
T cd01886 61 WKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRI-AFVNKMDRTGAD------F 133 (270)
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCCCCC------H
Confidence 578889999998754332223334567799999988766544556788888888888876 788997643211 1
Q ss_pred CchHHHHHHHhCCCc-EEeccCch
Q 009574 363 RGSGSQVVQQFGIPH-LFDLPIRP 385 (532)
Q Consensus 363 ~~~~~~l~~~~g~~~-l~~IP~~~ 385 (532)
....+++.+.++... ...+|...
T Consensus 134 ~~~~~~l~~~l~~~~~~~~~Pisa 157 (270)
T cd01886 134 FRVVEQIREKLGANPVPLQLPIGE 157 (270)
T ss_pred HHHHHHHHHHhCCCceEEEecccc
Confidence 135778888887543 34467643
No 130
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=97.52 E-value=0.00017 Score=75.89 Aligned_cols=51 Identities=24% Similarity=0.326 Sum_probs=45.9
Q ss_pred cceEEEEEeCcC---CCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcc
Q 009574 177 ISNIVAVSSCKG---GVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN 230 (532)
Q Consensus 177 ~~kiIav~s~KG---GvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~ 230 (532)
..|+|.|+|.-. |.||||+|+|||..|++.|+||+++ .+.|++...||...
T Consensus 37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l~~---LR~PSlg~~fg~kg 90 (524)
T cd00477 37 DGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIAC---LREPSLGPTFGIKG 90 (524)
T ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEE---EecCCcCcccCCCC
Confidence 468999999999 9999999999999999999999988 88889888877653
No 131
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.44 E-value=0.0016 Score=64.80 Aligned_cols=95 Identities=15% Similarity=0.088 Sum_probs=61.1
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009574 283 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 362 (532)
Q Consensus 283 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 362 (532)
|+.+.+.++|||+...........+..+|.+++|+.....-.....+.++.....+.++ -+++|+++..... .
T Consensus 68 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~-iivvNK~D~~~a~------~ 140 (267)
T cd04169 68 YRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPI-ITFINKLDREGRD------P 140 (267)
T ss_pred eCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCE-EEEEECCccCCCC------H
Confidence 57889999999875332222233355689999998876543344566677777778884 4678997643211 1
Q ss_pred CchHHHHHHHhCCCcEE-eccCc
Q 009574 363 RGSGSQVVQQFGIPHLF-DLPIR 384 (532)
Q Consensus 363 ~~~~~~l~~~~g~~~l~-~IP~~ 384 (532)
....+++++.++.+.+. .+|..
T Consensus 141 ~~~~~~l~~~l~~~~~~~~~Pi~ 163 (267)
T cd04169 141 LELLDEIEEELGIDCTPLTWPIG 163 (267)
T ss_pred HHHHHHHHHHHCCCceeEEeccc
Confidence 13477888889876553 46653
No 132
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=97.41 E-value=0.00097 Score=68.44 Aligned_cols=43 Identities=37% Similarity=0.428 Sum_probs=36.9
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 222 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~ 222 (532)
-++++.++ -++||||++.-||-.+-++|++|.+||+|+-++.+
T Consensus 74 ~~vmvvG~-vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei 116 (398)
T COG1341 74 GVVMVVGP-VDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEI 116 (398)
T ss_pred cEEEEECC-cCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCccc
Confidence 37788844 46899999999999999999999999999977653
No 133
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.41 E-value=0.0012 Score=59.97 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=37.3
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
||+|++|+ |.-|+||||+.-.|...|.++|+||.+|--...+
T Consensus 1 m~~Il~iv-G~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~ 42 (161)
T COG1763 1 MMKILGIV-GYKNSGKTTLIEKLVRKLKARGYRVATVKHAHHD 42 (161)
T ss_pred CCcEEEEE-ecCCCChhhHHHHHHHHHHhCCcEEEEEEecCCC
Confidence 68999999 6667899999999999999999999999776654
No 134
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.38 E-value=0.00024 Score=64.57 Aligned_cols=52 Identities=25% Similarity=0.243 Sum_probs=43.9
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCC
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSP 228 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~ 228 (532)
..+.+|=|+ |-.|+||||+|..|+..|.++|++|-++|.|.-...+..-+|.
T Consensus 21 ~~~~viW~T-GLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgF 72 (197)
T COG0529 21 QKGAVIWFT-GLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGF 72 (197)
T ss_pred CCCeEEEee-cCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCC
Confidence 344677777 8999999999999999999999999999999877666655554
No 135
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=97.38 E-value=0.00029 Score=74.77 Aligned_cols=51 Identities=22% Similarity=0.404 Sum_probs=46.0
Q ss_pred cceEEEEEeCcC---CCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcc
Q 009574 177 ISNIVAVSSCKG---GVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN 230 (532)
Q Consensus 177 ~~kiIav~s~KG---GvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~ 230 (532)
..|+|.|+|.-. |.||||+|+|||..|++.|+|| ||+ .+.|++.-.||...
T Consensus 53 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~--i~~-LR~Pslg~~fg~kg 106 (578)
T PRK13506 53 KGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKV--CAC-IRQPSMGPVFGVKG 106 (578)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCce--EEE-eccCCcCCccCCCC
Confidence 468999999899 9999999999999999999999 888 99999988876543
No 136
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.38 E-value=0.00075 Score=65.14 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=34.3
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
|++|.|++. .|+||||++.+|+..|.++|+||.+|..+
T Consensus 1 m~vi~ivG~-~gsGKTtl~~~l~~~L~~~G~~V~viK~~ 38 (229)
T PRK14494 1 MRAIGVIGF-KDSGKTTLIEKILKNLKERGYRVATAKHT 38 (229)
T ss_pred CeEEEEECC-CCChHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 678999966 59999999999999999999999999754
No 137
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.34 E-value=0.00076 Score=61.35 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=33.1
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
||+|+ |..|+||||++..|+..|.++|+||.+|..|..
T Consensus 1 vi~i~-G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~~ 38 (155)
T TIGR00176 1 VLQIV-GPKNSGKTTLIERLVKALKARGYRVATIKHDHH 38 (155)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 46677 666999999999999999999999999998753
No 138
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.32 E-value=0.0016 Score=63.13 Aligned_cols=161 Identities=20% Similarity=0.263 Sum_probs=83.9
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 257 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 257 (532)
+.+|.|. |-.|+||||....|-.++...+.+--+|.+||.-...+.-.+.+-+ +...-.+.+... + +=|
T Consensus 19 p~~ilVv-GMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIR--DtVkYkEvMkqY---~--LGP--- 87 (366)
T KOG1532|consen 19 PVIILVV-GMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIR--DTVKYKEVMKQY---Q--LGP--- 87 (366)
T ss_pred CcEEEEE-ecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchh--hhhhHHHHHHHh---C--CCC---
Confidence 3466666 8899999999999999999988888999999976554443222211 000000000000 0 001
Q ss_pred CCCcccccCCchHHHHHHH---HHHhcccCCCCEEEEcCCCCCChhhhh---------hhhhcCCCeEEEEeCCCcch--
Q 009574 258 SGQGRAIMRGPMVSGVINQ---LLTTTEWGELDYLVIDMPPGTGDIQLT---------LCQVVPLTAAVIVTTPQKLA-- 323 (532)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~---ll~~~~~~~yD~VIIDtpp~~~~~~~~---------~~~~~~~d~viiV~~p~~~s-- 323 (532)
++...-.-..+...+.+ +++... +.+||||||||+-.....++ ++...+.-.+.+|=+|...+
T Consensus 88 --NGgI~TsLNLF~tk~dqv~~~iek~~-~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~ 164 (366)
T KOG1532|consen 88 --NGGIVTSLNLFATKFDQVIELIEKRA-EEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPT 164 (366)
T ss_pred --CcchhhhHHHHHHHHHHHHHHHHHhh-cccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCch
Confidence 11100011122233443 333333 67999999999854322221 11122212223333343332
Q ss_pred --HHHHHHHHHHHHcCCCCEEEEEEecccccC
Q 009574 324 --FIDVAKGVRMFSKLKVPCIAVVENMCHFDA 353 (532)
Q Consensus 324 --~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~ 353 (532)
+....-+...+-+.+++. -+++|+.+...
T Consensus 165 tFMSNMlYAcSilyktklp~-ivvfNK~Dv~d 195 (366)
T KOG1532|consen 165 TFMSNMLYACSILYKTKLPF-IVVFNKTDVSD 195 (366)
T ss_pred hHHHHHHHHHHHHHhccCCe-EEEEecccccc
Confidence 223444456666778884 57789976543
No 139
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.21 E-value=0.0019 Score=61.89 Aligned_cols=67 Identities=15% Similarity=0.078 Sum_probs=42.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
..+.+.|+|||+...........+..+|.+++|+...........+.++.+...+.+ +-+|+|+++.
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p-~iiviNK~D~ 135 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLP-IVLVINKIDR 135 (213)
T ss_pred CEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECccc
Confidence 457899999998543333333335577999999887544323344555555555666 4578899763
No 140
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=97.19 E-value=0.0011 Score=69.19 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=34.6
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
|++|+|++.| |+||||+..+|...|.++|+||.+|--|.
T Consensus 1 MkVi~IvG~s-gSGKTTLiekLI~~L~~rG~rVavIKH~h 39 (452)
T PRK14495 1 MRVYGIIGWK-DAGKTGLVERLVAAIAARGFSVSTVKHSH 39 (452)
T ss_pred CcEEEEEecC-CCCHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 6799999665 99999999999999999999999976543
No 141
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.12 E-value=0.003 Score=59.75 Aligned_cols=68 Identities=16% Similarity=0.254 Sum_probs=48.3
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
+.+.+++||||+...........+..+|.+++|+.....-.......+..+...+.+.+-+++|+.+.
T Consensus 63 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~ 130 (195)
T cd01884 63 ANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADM 130 (195)
T ss_pred CCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCC
Confidence 56778999998743222223334557899999998876444566777888888888766688899764
No 142
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.11 E-value=0.0011 Score=63.21 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=35.0
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+.++.|+ |.+|+|||+++.++|...++.|.+|+.||++-
T Consensus 12 g~i~~i~-G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 12 GTITQIY-GPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 4566776 89999999999999999999999999999984
No 143
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.07 E-value=0.00012 Score=71.46 Aligned_cols=38 Identities=32% Similarity=0.329 Sum_probs=28.3
Q ss_pred CcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCC
Q 009574 186 CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP 223 (532)
Q Consensus 186 ~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~ 223 (532)
|-.|+||||.+.++..++...|++|.+|-+||....++
T Consensus 3 GpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~ 40 (238)
T PF03029_consen 3 GPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLP 40 (238)
T ss_dssp ESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--S
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccc
Confidence 55799999999999999999999999999999775543
No 144
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.03 E-value=0.0017 Score=58.01 Aligned_cols=42 Identities=31% Similarity=0.261 Sum_probs=32.8
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEE-EEEcCCCCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG-IFDADVYGPS 221 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVl-lID~D~~~~s 221 (532)
++|+|++.| |+||||++..|...|.++|++|. +.|.|..++.
T Consensus 1 pvv~VvG~~-~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g~~~ 43 (140)
T PF03205_consen 1 PVVQVVGPK-NSGKTTLIRKLINELKRRGYRVAVIKHTDHGQFE 43 (140)
T ss_dssp -EEEEEEST-TSSHHHHHHHHHHHHHHTT--EEEEEE-STTSTT
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHhHcCCceEEEEEccCCCcc
Confidence 378899665 89999999999999999999999 8899984433
No 145
>PRK04296 thymidine kinase; Provisional
Probab=96.99 E-value=0.013 Score=55.10 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=30.6
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 213 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllI 213 (532)
+.++.++ |-.|+||||.+..++..++..|++|+++
T Consensus 2 g~i~lit-G~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 2 AKLEFIY-GAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred cEEEEEE-CCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 4455555 8889999999999999999999999999
No 146
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=96.98 E-value=0.0026 Score=66.96 Aligned_cols=198 Identities=17% Similarity=0.199 Sum_probs=106.1
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccc--------------cCCCCCc-ee
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE--------------MNPEKRT-II 243 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~--------------~~~~~~~-i~ 243 (532)
+.|.|.+.-..+|||++++.|...++++|++|.=+ -.|+-++..+.-.+..... ...+... +.
T Consensus 2 ~~iMv~GT~S~~GKS~~~aglcRi~~~~G~~V~PF--K~QNMsLNs~it~~G~EIgraQ~~QA~Aa~i~p~v~mNPvLLK 79 (486)
T COG1492 2 KAIMVQGTTSDAGKSFLVAGLCRILARRGYRVAPF--KSQNMSLNSAITPGGGEIGRAQALQALAAGIEPSVHMNPVLLK 79 (486)
T ss_pred CccEEEeccCCcchhhhhhhhhHHHHhcCCccCCC--chhhcccccEECCCCcEEehhhhHHHHHcCCCCccccCCEEEe
Confidence 35677777888899999999999999999998643 3344444444222211000 0011111 12
Q ss_pred ecccCCcEEEecCCCCCcccc---c--CCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhh--------hhhhcCC
Q 009574 244 PTEYLGVKLVSFGFSGQGRAI---M--RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT--------LCQVVPL 310 (532)
Q Consensus 244 ~~~~~~l~vl~~~~~~~~~~~---~--~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~--------~~~~~~~ 310 (532)
|....+..+|-.+........ + .-......+.+.++.+. ..||+|++-...+.....+. ++.. +-
T Consensus 80 P~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l~-~~~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~-~d 157 (486)
T COG1492 80 PCSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERLD-REYDVVVIEGAGSPAEINLRDRDIANMGVAEI-AD 157 (486)
T ss_pred ecCCCceEEEEecccccccChHHHHHHHHHHHHHHHHHHHHHhh-hcccEEEEecCCChhhcCcccccccceeeehh-cC
Confidence 222235566654433211100 0 01112234455555554 89999999987654322211 1111 11
Q ss_pred CeEEEEeCCCcc-hHHHHHHHHHHHHc-CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchh
Q 009574 311 TAAVIVTTPQKL-AFIDVAKGVRMFSK-LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPT 386 (532)
Q Consensus 311 d~viiV~~p~~~-s~~~~~~~i~~l~~-~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~ 386 (532)
.-+++|..=+.- .+..+.-.+..+.. .+..+.|+|+|+.+-+. ..-...++.+.+..|.++++.+|+...
T Consensus 158 apvILV~DIdRGGvfAsl~GT~~lL~~~~r~~VkG~iINkFRGd~------~ll~~gik~Le~~tg~~vlGv~P~~~~ 229 (486)
T COG1492 158 APVILVGDIDRGGVFASLYGTLALLPESDRALVKGFIINKFRGDE------SLLDPGLKWLEELTGVPVLGVLPYLKD 229 (486)
T ss_pred CCEEEEEeecccceeeeeeehheecCHhHhcceeEEEEeeeCCCH------HHHhhHHHHHHHhhCCeeEeecccccc
Confidence 234566554441 12222222333322 23457899999844332 223357889999999999999998764
No 147
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=96.92 E-value=0.0083 Score=61.61 Aligned_cols=192 Identities=17% Similarity=0.203 Sum_probs=96.4
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEE-ec
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLV-SF 255 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl-~~ 255 (532)
||+++.+++.-.|+|||+++.+|+..|.++|.+|.++--=. ...|.+.. ...+.........+..= |.
T Consensus 1 m~~~l~l~p~~~~~G~tsi~lgLl~~l~~k~~kva~~kPI~------~~~~~~~~-----~~~e~~~~~~~~~l~~~~~~ 69 (354)
T COG0857 1 MSRTLLLIPTETGVGKTSISLGLLRALEQKGLKVAYFKPIG------TRTGKDAD-----DLTEEDIRATSSSLTYAEPL 69 (354)
T ss_pred CcceEEEeccCCCccHHHHHHHHHHHHHHcCceeEEEeccc------cccCCccc-----hhHHHHHHHhhhhcccCccc
Confidence 78999999999999999999999999999999999864221 11111100 00000000000000000 00
Q ss_pred CCCCCcccccCCchHHHHHHHHHH---hcccCCCCEEEEcC--CC----CCChhhhhhhhhcCCCeEEEEeCCCcchHHH
Q 009574 256 GFSGQGRAIMRGPMVSGVINQLLT---TTEWGELDYLVIDM--PP----GTGDIQLTLCQVVPLTAAVIVTTPQKLAFID 326 (532)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~l~~ll~---~~~~~~yD~VIIDt--pp----~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~ 326 (532)
.. .....+........++++.++ ++. ...|++++.. |- +..+....++.... ..++++..+...+...
T Consensus 70 ~~-~~ae~L~~~~~~d~l~e~i~~~y~e~~-~~~~~vv~~g~~~~~~~~~~~~ln~~iA~~Ln-a~~vlva~~~~~~~~~ 146 (354)
T COG0857 70 VL-SFAEVLLSTGQDDVLLEEILANYAELA-KDADVVVVEGDVPTREGPYALDLNYEIAKNLN-AAAVLVARALLVTPYE 146 (354)
T ss_pred ch-hhHHHHhccccchHHHHHHHHHHHHHh-ccCceEEeccceeccccCccccccHHHHhhcC-cchhhccccccCChhh
Confidence 00 000011111111222333322 222 3556666642 21 11111111221222 3456666666665554
Q ss_pred HHHH----HHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhh
Q 009574 327 VAKG----VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTL 387 (532)
Q Consensus 327 ~~~~----i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i 387 (532)
...- ...+...+..+.|||+|.+...... +......++.+..+...++.+|...-+
T Consensus 147 ~~~~i~~~~~~~~~~~~~l~gVv~N~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~l~~~~ll 206 (354)
T COG0857 147 LKSRVELALAAFGAAGNNLAGVVINNAPVDEAG-----RTEDLLAEFLESSGIAVVGVLPPNRLL 206 (354)
T ss_pred hhhHHHHHHHHhcccCCceEEEEecCCChhhhh-----hhhhHHHHHhhhccccccccCCHHHHh
Confidence 4433 3444444557999999965544332 234567777777787788888876643
No 148
>PRK12740 elongation factor G; Reviewed
Probab=96.90 E-value=0.0058 Score=68.97 Aligned_cols=94 Identities=21% Similarity=0.168 Sum_probs=63.1
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009574 283 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 362 (532)
Q Consensus 283 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 362 (532)
|+.|++.+||||+...........+..+|.+++|+.+...........++.+...+.+.+ +|+|+++..... .
T Consensus 57 ~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~D~~~~~------~ 129 (668)
T PRK12740 57 WKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRI-IFVNKMDRAGAD------F 129 (668)
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEE-EEEECCCCCCCC------H
Confidence 578999999998754322222333557899999999877655556667777777788755 688997643211 1
Q ss_pred CchHHHHHHHhCCCcE-EeccC
Q 009574 363 RGSGSQVVQQFGIPHL-FDLPI 383 (532)
Q Consensus 363 ~~~~~~l~~~~g~~~l-~~IP~ 383 (532)
....+++.+.++.+.+ ..+|.
T Consensus 130 ~~~~~~l~~~l~~~~~~~~~p~ 151 (668)
T PRK12740 130 FRVLAQLQEKLGAPVVPLQLPI 151 (668)
T ss_pred HHHHHHHHHHHCCCceeEEecc
Confidence 2467788888886543 44665
No 149
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=96.87 E-value=0.0057 Score=56.64 Aligned_cols=68 Identities=15% Similarity=0.057 Sum_probs=43.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
..++++++|||+...........+..+|.+++|+.............+..+...+.+ +-+++|+++..
T Consensus 60 ~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-i~iv~nK~D~~ 127 (189)
T cd00881 60 PDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLP-IIVAINKIDRV 127 (189)
T ss_pred CCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCC-eEEEEECCCCc
Confidence 467899999986433222222334467999999887765444455566666665555 56788997643
No 150
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.84 E-value=0.0029 Score=56.95 Aligned_cols=38 Identities=29% Similarity=0.320 Sum_probs=33.5
Q ss_pred EEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCC
Q 009574 183 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 220 (532)
Q Consensus 183 v~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~ 220 (532)
+..|+.|+||||++..++..++..|.+|++++.+....
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 34489999999999999999999999999999987543
No 151
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.83 E-value=0.0021 Score=59.56 Aligned_cols=41 Identities=32% Similarity=0.358 Sum_probs=36.3
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
+++|.++ |-.|+||||+|..||..|...|.+|.++|.|...
T Consensus 4 g~~i~~~-G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 4 GVTVWFT-GLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 4578877 8899999999999999999889999999999654
No 152
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=96.82 E-value=0.0087 Score=57.13 Aligned_cols=70 Identities=11% Similarity=0.130 Sum_probs=44.2
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 283 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 283 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
++...+.|+|||+...........+..+|.+++|+.....-.....+...++...+.+.+-+|+|+.+..
T Consensus 74 ~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 143 (208)
T cd04166 74 TPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLV 143 (208)
T ss_pred cCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcc
Confidence 3667899999986322111122234567999999887654444445555666666666566788997753
No 153
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=96.79 E-value=0.0066 Score=56.88 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=50.9
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 283 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 283 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
+..+.+.+||||+...........+..+|.+++|+.+...-.......++.+...+++ +-+++|+++.
T Consensus 67 ~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~ 134 (188)
T PF00009_consen 67 ENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDL 134 (188)
T ss_dssp ESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTS
T ss_pred ccccceeecccccccceeecccceecccccceeeeecccccccccccccccccccccc-eEEeeeeccc
Confidence 3788999999987433222233345678999999998876666788889999999999 7788899764
No 154
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.78 E-value=0.015 Score=52.09 Aligned_cols=67 Identities=12% Similarity=0.117 Sum_probs=39.9
Q ss_pred CCCCEEEEcCCCCCChhh--------hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~--------~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
..++++++|||+-..... ........+|.+++|+..............+.+...+.+ +.+|+|+++.
T Consensus 49 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl 123 (168)
T cd04163 49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTP-VILVLNKIDL 123 (168)
T ss_pred CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCC-EEEEEEchhc
Confidence 357899999977322110 111124456888888887765333344555666655566 4688899764
No 155
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.78 E-value=0.0023 Score=58.01 Aligned_cols=43 Identities=28% Similarity=0.355 Sum_probs=36.7
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 222 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~ 222 (532)
.+|-++ |..|+||||+|..|...|..+|.+|.++|.|.-...+
T Consensus 3 ~vIwlt-GlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l 45 (156)
T PF01583_consen 3 FVIWLT-GLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGL 45 (156)
T ss_dssp EEEEEE-SSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTT
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhcc
Confidence 466666 9999999999999999999999999999999766443
No 156
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=96.73 E-value=0.017 Score=62.97 Aligned_cols=94 Identities=15% Similarity=0.091 Sum_probs=61.8
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009574 283 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 362 (532)
Q Consensus 283 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 362 (532)
|+.+.+.++|||+...........+..+|.+++|+.....-...+.+.++..+..++++ -+++|+.+..... .
T Consensus 76 ~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPi-iv~iNK~D~~~a~------~ 148 (526)
T PRK00741 76 YRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPI-FTFINKLDRDGRE------P 148 (526)
T ss_pred ECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCE-EEEEECCcccccC------H
Confidence 46788999999875332222233356789999998876544445667778887788885 4778997643211 1
Q ss_pred CchHHHHHHHhCCCcE-EeccC
Q 009574 363 RGSGSQVVQQFGIPHL-FDLPI 383 (532)
Q Consensus 363 ~~~~~~l~~~~g~~~l-~~IP~ 383 (532)
.+.++++.+.++.+.+ ..+|.
T Consensus 149 ~~~l~~i~~~l~~~~~p~~~Pi 170 (526)
T PRK00741 149 LELLDEIEEVLGIACAPITWPI 170 (526)
T ss_pred HHHHHHHHHHhCCCCeeEEecc
Confidence 2456788888887644 33554
No 157
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.73 E-value=0.0084 Score=54.53 Aligned_cols=35 Identities=37% Similarity=0.581 Sum_probs=28.7
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
.|-|..+. |.||||.|..+|...+.+|+||++|=+
T Consensus 4 ~i~vy~g~-G~Gkt~~a~g~~~ra~~~g~~v~~vQF 38 (159)
T cd00561 4 LIQVYTGN-GKGKTTAALGLALRALGHGYRVGVVQF 38 (159)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 34455344 999999999999999999999999644
No 158
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=96.70 E-value=0.0047 Score=70.13 Aligned_cols=68 Identities=15% Similarity=-0.001 Sum_probs=47.3
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 283 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 283 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
|.+|++.|||||+-..........+..+|.+++|+.....-.......++.+.+.+.+.+ +++|+++.
T Consensus 83 ~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~ 150 (720)
T TIGR00490 83 GNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPV-LFINKVDR 150 (720)
T ss_pred CCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEE-EEEEChhc
Confidence 578999999999754322233344667899999987755333445566666666778876 89999764
No 159
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.68 E-value=0.0023 Score=60.75 Aligned_cols=39 Identities=28% Similarity=0.393 Sum_probs=35.7
Q ss_pred CcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCC
Q 009574 186 CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT 224 (532)
Q Consensus 186 ~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~ 224 (532)
|-+|+||||-+..+...|+..|.+|.+|.+||.+-.++.
T Consensus 9 GPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y 47 (290)
T KOG1533|consen 9 GPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPY 47 (290)
T ss_pred cCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCC
Confidence 789999999999999999999999999999998766554
No 160
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.66 E-value=0.0082 Score=55.40 Aligned_cols=42 Identities=24% Similarity=0.376 Sum_probs=36.0
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
++++++|+ |..|+||||+...|...|..+|+||..|-.+..+
T Consensus 5 ~~~ii~iv-G~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~~ 46 (173)
T PRK10751 5 MIPLLAIA-AWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (173)
T ss_pred CceEEEEE-CCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 45677777 7899999999999999999999999999876543
No 161
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.66 E-value=0.0032 Score=60.49 Aligned_cols=39 Identities=31% Similarity=0.497 Sum_probs=34.2
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
.++.|+ +.+|+||||++.++|..++..|.+|+.+|++..
T Consensus 20 ~i~~i~-G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~ 58 (218)
T cd01394 20 TVTQVY-GPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGL 58 (218)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 455555 899999999999999999999999999998754
No 162
>PRK07667 uridine kinase; Provisional
Probab=96.63 E-value=0.0039 Score=58.83 Aligned_cols=39 Identities=28% Similarity=0.374 Sum_probs=35.5
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
.+|++. |-.|+||||+|..|+..|.+.|.+|.++++|-.
T Consensus 18 ~iIgI~-G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 18 FILGID-GLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 477777 999999999999999999999999999999974
No 163
>PRK08233 hypothetical protein; Provisional
Probab=96.60 E-value=0.0064 Score=56.36 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=29.2
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
.++|+|+++ .|+||||+|..||..|. +..++..|.+.+
T Consensus 3 ~~iI~I~G~-~GsGKtTla~~L~~~l~--~~~~~~~d~~~~ 40 (182)
T PRK08233 3 TKIITIAAV-SGGGKTTLTERLTHKLK--NSKALYFDRYDF 40 (182)
T ss_pred ceEEEEECC-CCCCHHHHHHHHHhhCC--CCceEEECCEEc
Confidence 367888855 59999999999998874 347777887754
No 164
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.59 E-value=0.013 Score=53.89 Aligned_cols=35 Identities=31% Similarity=0.501 Sum_probs=29.4
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
+..++ + .|.||||.|..+|..++.+|+||+++=+-
T Consensus 8 i~v~~-g-~GkGKtt~a~g~a~ra~~~g~~v~ivQFl 42 (173)
T TIGR00708 8 IIVHT-G-NGKGKTTAAFGMALRALGHGKKVGVIQFI 42 (173)
T ss_pred EEEEC-C-CCCChHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 44444 3 89999999999999999999999998554
No 165
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.51 E-value=0.0043 Score=62.97 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=34.2
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
++++.|+ +..|+||||+|.+++...++.|.+|++||+.-
T Consensus 55 G~iteI~-G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~ 93 (321)
T TIGR02012 55 GRIIEIY-GPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 93 (321)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEEcccc
Confidence 3566666 77999999999999999999999999999874
No 166
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.50 E-value=0.0088 Score=57.48 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=28.1
Q ss_pred cCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 175 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 175 ~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
++..+.+.|+ |+.|+||||+|.+|+ .++++++.|-.
T Consensus 9 ~~~~~~~liy-G~~G~GKtt~a~~~~-------~~~~~~~~d~~ 44 (220)
T TIGR01618 9 KRIPNMYLIY-GKPGTGKTSTIKYLP-------GKTLVLSFDMS 44 (220)
T ss_pred CCCCcEEEEE-CCCCCCHHHHHHhcC-------CCCEEEecccc
Confidence 3334567777 999999999988873 47899999973
No 167
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.49 E-value=0.006 Score=55.69 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=36.1
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
|++|+|++. .|+||||++..|+..|...|++|..|..|..+
T Consensus 1 m~vi~i~G~-~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~~ 41 (159)
T cd03116 1 MKVIGFVGY-SGSGKTTLLEKLIPALSARGLRVAVIKHDHHD 41 (159)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCcEEEEEecCCc
Confidence 578999954 59999999999999999999999999887654
No 168
>PRK00089 era GTPase Era; Reviewed
Probab=96.48 E-value=0.03 Score=56.33 Aligned_cols=68 Identities=12% Similarity=0.091 Sum_probs=40.9
Q ss_pred CCCCEEEEcCCCCCChh--------hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~--------~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
+.+.++++|||+-.... ......+..+|.+++|+.....-.......++.+...+.++ -+|+|+++..
T Consensus 51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pv-ilVlNKiDl~ 126 (292)
T PRK00089 51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPV-ILVLNKIDLV 126 (292)
T ss_pred CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCE-EEEEECCcCC
Confidence 45789999998743211 01112244678888888876622233445556666556664 4788997653
No 169
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=96.47 E-value=0.021 Score=62.26 Aligned_cols=94 Identities=15% Similarity=0.072 Sum_probs=59.4
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009574 283 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 362 (532)
Q Consensus 283 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 362 (532)
|+.+.+.|+|||+...........+..+|.+++|+.....-...+...++.++..+.+ +-+++|+++..... .
T Consensus 77 ~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~P-iivviNKiD~~~~~------~ 149 (527)
T TIGR00503 77 YRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTP-IFTFMNKLDRDIRD------P 149 (527)
T ss_pred eCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEECccccCCC------H
Confidence 4678899999997532222222335578999999987764344566777777777777 55677997743211 1
Q ss_pred CchHHHHHHHhCCCcE-EeccC
Q 009574 363 RGSGSQVVQQFGIPHL-FDLPI 383 (532)
Q Consensus 363 ~~~~~~l~~~~g~~~l-~~IP~ 383 (532)
.+..+++.+.++...+ ..+|.
T Consensus 150 ~~ll~~i~~~l~~~~~~~~~PI 171 (527)
T TIGR00503 150 LELLDEVENELKINCAPITWPI 171 (527)
T ss_pred HHHHHHHHHHhCCCCccEEEEe
Confidence 1356778888875432 33453
No 170
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=96.43 E-value=0.22 Score=57.06 Aligned_cols=64 Identities=14% Similarity=0.108 Sum_probs=47.8
Q ss_pred CCCCEEEEcCCCCCCh------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEec
Q 009574 284 GELDYLVIDMPPGTGD------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENM 348 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~------~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~ 348 (532)
..+|++||.+.+|+-. ....+..... --+++|+...--++..+.-.++.++..|+++.|+|+|.
T Consensus 183 ~~~d~vlVEGAGGl~vPl~~~~~~~Dl~~~l~-lPvILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~ 252 (817)
T PLN02974 183 GGRVLALVETAGGVASPGPSGTLQCDLYRPLR-LPAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIED 252 (817)
T ss_pred ccCCeEEEECCCcccccCCCCCCHHHHHHHhC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeC
Confidence 4689999999987621 1111111111 24788888888899999999999999999999999996
No 171
>PRK00007 elongation factor G; Reviewed
Probab=96.42 E-value=0.027 Score=63.70 Aligned_cols=94 Identities=21% Similarity=0.125 Sum_probs=63.3
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009574 283 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 362 (532)
Q Consensus 283 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 362 (532)
|.++.+.+||||+-.....-....+..+|.+++|+.....-.......++.+.+.+.+.+ +++|+.+..... .
T Consensus 72 ~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~i-v~vNK~D~~~~~------~ 144 (693)
T PRK00007 72 WKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRI-AFVNKMDRTGAD------F 144 (693)
T ss_pred ECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCCCCCC------H
Confidence 578899999998743222222333556799999998765545566788888888899976 889997744311 1
Q ss_pred CchHHHHHHHhCCCc-EEeccC
Q 009574 363 RGSGSQVVQQFGIPH-LFDLPI 383 (532)
Q Consensus 363 ~~~~~~l~~~~g~~~-l~~IP~ 383 (532)
....+++.+.++... ...+|.
T Consensus 145 ~~~~~~i~~~l~~~~~~~~ipi 166 (693)
T PRK00007 145 YRVVEQIKDRLGANPVPIQLPI 166 (693)
T ss_pred HHHHHHHHHHhCCCeeeEEecC
Confidence 235678888887543 334565
No 172
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=96.42 E-value=0.045 Score=52.94 Aligned_cols=67 Identities=15% Similarity=0.090 Sum_probs=46.2
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhh--cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQV--VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~--~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
..+-+.+||||+-..........+ ..+|.+++|+..+..-.......+..+...+.++ -+|+|+++.
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~-ivvvNK~D~ 150 (224)
T cd04165 82 SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPV-FVVVTKIDL 150 (224)
T ss_pred CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCE-EEEEECccc
Confidence 677899999987432222222222 2468888888876655566677888888889985 588899774
No 173
>PRK00093 GTP-binding protein Der; Reviewed
Probab=96.38 E-value=0.033 Score=59.51 Aligned_cols=67 Identities=12% Similarity=0.019 Sum_probs=40.0
Q ss_pred CCCCEEEEcCCCCCChh--------hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~--------~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
+.+++.|+|||+..... ......+..+|.+++|+.....-...-....+.++..+.++ -+|+|+++.
T Consensus 47 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~pi-ilv~NK~D~ 121 (435)
T PRK00093 47 LGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPV-ILVVNKVDG 121 (435)
T ss_pred CCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcE-EEEEECccC
Confidence 45678999997643200 01122244679999988876532222234556666667775 478899773
No 174
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.36 E-value=0.0067 Score=58.57 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=34.2
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
+.++.|+ |.+|+|||++|.++|...++.|.+|+.||++
T Consensus 23 g~i~~i~-G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 23 GTITQIY-GPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3466666 8999999999999999999999999999999
No 175
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.35 E-value=0.0051 Score=60.07 Aligned_cols=39 Identities=31% Similarity=0.324 Sum_probs=32.0
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHH------------CCCcEEEEEcCCCC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAG------------MGARVGIFDADVYG 219 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~------------~G~rVllID~D~~~ 219 (532)
+++..+-||+||||++.++|.++|. .+.+|++++++-..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~ 53 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPR 53 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCH
Confidence 4566699999999999999999873 35689999987643
No 176
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.35 E-value=0.0062 Score=57.68 Aligned_cols=43 Identities=28% Similarity=0.298 Sum_probs=37.1
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
..+.+|.++ |..|+||||++..|+..|...|..++++|.|...
T Consensus 22 ~~~~~i~i~-G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 22 HKGVVLWFT-GLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 345678877 8899999999999999999889999999998754
No 177
>PRK00049 elongation factor Tu; Reviewed
Probab=96.34 E-value=0.026 Score=59.49 Aligned_cols=68 Identities=16% Similarity=0.303 Sum_probs=48.2
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
+.+.+++||||+-..........+..+|.+++|+.....-.......+.++...+.+.+-+++|+.+.
T Consensus 73 ~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~ 140 (396)
T PRK00049 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCC
Confidence 56678999998742222222233556899999998876545566777888888898877778899764
No 178
>PRK12739 elongation factor G; Reviewed
Probab=96.32 E-value=0.041 Score=62.35 Aligned_cols=94 Identities=22% Similarity=0.107 Sum_probs=61.8
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009574 283 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 362 (532)
Q Consensus 283 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 362 (532)
|+++.+++||||+-..........+..+|.+++|+.....-.......+..+...+.+.+ +++|+.+..... .
T Consensus 70 ~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~i-v~iNK~D~~~~~------~ 142 (691)
T PRK12739 70 WKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRI-VFVNKMDRIGAD------F 142 (691)
T ss_pred ECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCCCCC------H
Confidence 578899999998743222222333556799999998765444555677888888888876 889997754321 1
Q ss_pred CchHHHHHHHhCCCc-EEeccC
Q 009574 363 RGSGSQVVQQFGIPH-LFDLPI 383 (532)
Q Consensus 363 ~~~~~~l~~~~g~~~-l~~IP~ 383 (532)
....+++.+.++... ...+|.
T Consensus 143 ~~~~~~i~~~l~~~~~~~~iPi 164 (691)
T PRK12739 143 FRSVEQIKDRLGANAVPIQLPI 164 (691)
T ss_pred HHHHHHHHHHhCCCceeEEecc
Confidence 135677777776533 334564
No 179
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.31 E-value=0.033 Score=49.63 Aligned_cols=67 Identities=15% Similarity=0.106 Sum_probs=40.3
Q ss_pred CCCCEEEEcCCCCCChhh--------hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~--------~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
..+.+.|+|||+...... ........+|.+++|+.+............+.++..+.+ +-+|+|+++.
T Consensus 43 ~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~ 117 (157)
T cd01894 43 GGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKP-VILVVNKVDN 117 (157)
T ss_pred CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCC-EEEEEECccc
Confidence 457899999998543211 111123457888888877543222223455666666666 5678899754
No 180
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=96.27 E-value=0.044 Score=49.65 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=43.2
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
..+++.++|||+..............+|.+++|+.++..........+..+...+.+ +-+|+|+++.
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl 114 (168)
T cd01887 48 KIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVP-FIVALNKIDK 114 (168)
T ss_pred CcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEEceec
Confidence 478899999986432222222224467889999888764344444555666667777 5678899764
No 181
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.22 E-value=0.013 Score=57.02 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=33.8
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
.++.++ +-.|+||||++.++++..+++|.+|+.++++-
T Consensus 26 ~~~~i~-G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 26 SLILIE-GDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred cEEEEE-CCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 466666 89999999999999999888999999999974
No 182
>PRK06696 uridine kinase; Validated
Probab=96.20 E-value=0.0085 Score=57.90 Aligned_cols=40 Identities=28% Similarity=0.171 Sum_probs=34.6
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
.+|+|. |.+|+||||+|..||..|...|.+|+.+-+|-..
T Consensus 23 ~iI~I~-G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 23 LRVAID-GITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 466666 8999999999999999999889999998887654
No 183
>PRK05973 replicative DNA helicase; Provisional
Probab=96.19 E-value=0.0072 Score=58.77 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=34.3
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
.+.+.++.+|+|||+++.++|...+++|++|+++.++..
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes 103 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT 103 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC
Confidence 345555999999999999999999999999999999874
No 184
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.18 E-value=0.0067 Score=59.35 Aligned_cols=34 Identities=29% Similarity=0.290 Sum_probs=30.8
Q ss_pred EEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 182 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 182 av~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
.+..|++|+|||+++.++|..|.+.|++|+++++
T Consensus 102 ~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 102 FIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 4556999999999999999999999999999965
No 185
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.18 E-value=0.013 Score=56.58 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=33.8
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCC------CcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMG------ARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G------~rVllID~D~ 217 (532)
+.++.|+ |-.|+|||+++.++|...+..| .+|+.||.+-
T Consensus 19 g~v~~I~-G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIF-GEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEe-CCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 4577777 8999999999999999988777 8999999974
No 186
>PF13479 AAA_24: AAA domain
Probab=96.17 E-value=0.019 Score=55.14 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=25.7
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
.++|+ |..|+||||+|..+ -++++||+|..
T Consensus 5 ~~lIy-G~~G~GKTt~a~~~--------~k~l~id~E~g 34 (213)
T PF13479_consen 5 KILIY-GPPGSGKTTLAASL--------PKPLFIDTENG 34 (213)
T ss_pred EEEEE-CCCCCCHHHHHHhC--------CCeEEEEeCCC
Confidence 55666 99999999998887 69999999974
No 187
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.16 E-value=0.0092 Score=60.66 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=34.0
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
++++-|+ +-.|+||||+|.+++...++.|.+|+.||+.-
T Consensus 55 G~iteI~-Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~ 93 (325)
T cd00983 55 GRIIEIY-GPESSGKTTLALHAIAEAQKLGGTVAFIDAEH 93 (325)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEECccc
Confidence 3466666 78999999999999999999999999999864
No 188
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=96.15 E-value=0.1 Score=50.35 Aligned_cols=174 Identities=16% Similarity=0.213 Sum_probs=98.0
Q ss_pred cCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc---------------------ccccCCCCC-----
Q 009574 187 KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---------------------LLEMNPEKR----- 240 (532)
Q Consensus 187 KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~---------------------~~~~~~~~~----- 240 (532)
-.|.||=.+|+.++..|..+|++|..+-+||+-+--+..+.+-.. +.+......
T Consensus 10 ~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~~l~~~~niTt 89 (255)
T cd03113 10 VSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTNLSRDNNITT 89 (255)
T ss_pred ccCcchHHHHHHHHHHHHHCCCeEEEEeecccccCCCCCCCCccceeEEEccCCCcccccccchhhhcCCCCcCccCcCh
Confidence 567899999999999999999999999999987554443333211 000000000
Q ss_pred -----ceeeccc------CCcEEEecCCCCCcccccCCchHHHHHHHHHHhcc-cCCCCEEEEcCCCCCChhhhh-----
Q 009574 241 -----TIIPTEY------LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTE-WGELDYLVIDMPPGTGDIQLT----- 303 (532)
Q Consensus 241 -----~i~~~~~------~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~yD~VIIDtpp~~~~~~~~----- 303 (532)
.++..+. .-+.++| .....+++.+..+. ...+|++|+...+..||....
T Consensus 90 Gkiy~~vi~kER~G~ylG~TVQviP--------------Hit~eIk~~i~~~~~~~~~dv~i~EiGGTvGDiEs~pf~EA 155 (255)
T cd03113 90 GKIYSSVIEKERRGDYLGKTVQVIP--------------HITDEIKERIRRVAEKSGADVVIVEIGGTVGDIESLPFLEA 155 (255)
T ss_pred HHHHHHHHHHhhccCccCceEEECc--------------CccHHHHHHHHHhhccCCCCEEEEEeCCccccccccHHHHH
Confidence 0000000 0122222 23334444443332 368999999999887764321
Q ss_pred hhhh---cCCCeE------EEEeC--CCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHH
Q 009574 304 LCQV---VPLTAA------VIVTT--PQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQ 372 (532)
Q Consensus 304 ~~~~---~~~d~v------iiV~~--p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~ 372 (532)
+.++ ...+.+ +++.. ....--.-++..++.++..|+...++|+|.- . .......+.++..
T Consensus 156 irq~~~~~g~~n~~~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs~GIqPDgIVcRse--~-------pL~e~~keKIAlF 226 (255)
T cd03113 156 IRQMKLELGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSE--K-------PLPPEIREKIALF 226 (255)
T ss_pred HHHHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEeCC--C-------CCchHHHHHHHHh
Confidence 0000 011111 22211 2333344567778899999999999999871 1 2233456666666
Q ss_pred hCCCcEEeccC
Q 009574 373 FGIPHLFDLPI 383 (532)
Q Consensus 373 ~g~~~l~~IP~ 383 (532)
.+++....++.
T Consensus 227 cnVpve~VI~~ 237 (255)
T cd03113 227 CDVPPEAVISA 237 (255)
T ss_pred cCCCHHHeeec
Confidence 67776655553
No 189
>PRK10218 GTP-binding protein; Provisional
Probab=96.15 E-value=0.073 Score=59.00 Aligned_cols=69 Identities=12% Similarity=0.028 Sum_probs=48.4
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 283 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 283 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
|+.+.+.|+|||+...........+..+|.+++|+.....-.......+..+...+++.+ +++|+++..
T Consensus 65 ~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~I-VviNKiD~~ 133 (607)
T PRK10218 65 WNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPI-VVINKVDRP 133 (607)
T ss_pred cCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEE-EEEECcCCC
Confidence 467889999998743332222333557899999988776545566677777777888875 788997743
No 190
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.097 Score=52.27 Aligned_cols=168 Identities=17% Similarity=0.203 Sum_probs=103.9
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 257 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 257 (532)
.+++.+.+.---+||=|+|..|...+-..|+++..+-++..+-. . ...|+- +.
T Consensus 148 a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTgqtgil----------------------~-~~~gvv-vd--- 200 (339)
T COG3367 148 AKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATGQTGIL----------------------I-ADDGVV-VD--- 200 (339)
T ss_pred CcEEEEeccccccchhHHHHHHHHHHHHhCCccceEecCceeeE----------------------E-ecCceE-ec---
Confidence 67999999999999999999999999999999999988865411 0 111111 00
Q ss_pred CCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh----hhhhhhcCCCeEEEEeCCCcchHH-------H
Q 009574 258 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ----LTLCQVVPLTAAVIVTTPQKLAFI-------D 326 (532)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~----~~~~~~~~~d~viiV~~p~~~s~~-------~ 326 (532)
..........+..+.-.+...++|||+|-.-.++.... +....-.+-|.++++-.|...... .
T Consensus 201 ------av~~DfaAGave~~v~~~~e~~~Dii~VEGQgsl~HP~y~vtl~il~gs~PDavvL~H~P~r~~~~g~P~~ip~ 274 (339)
T COG3367 201 ------AVVMDFAAGAVESAVYEAEEKNPDIIFVEGQGSLTHPAYGVTLGILHGSAPDAVVLCHDPNRKYRDGFPEPIPP 274 (339)
T ss_pred ------chhHHHHHHHHHHHHHHhhhcCCCEEEEeccccccCCCcccchhhhcCCCCCeEEEEecCCCccccCCCCcCCC
Confidence 00112233445555444432489999999766554322 223333456899999888765544 2
Q ss_pred HHHHHHHHHcC-CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCc
Q 009574 327 VAKGVRMFSKL-KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIR 384 (532)
Q Consensus 327 ~~~~i~~l~~~-~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~ 384 (532)
+...+.....+ +.+++|+.+|--..+. ..-++..+++...||.|..-.+.+.
T Consensus 275 leevi~l~e~l~~a~Vvgi~lNtr~~dE------~~are~~a~l~~efglP~~Dp~~~~ 327 (339)
T COG3367 275 LEEVIALYELLSNAKVVGIALNTRNLDE------EEARELCAKLEAEFGLPVTDPLRFG 327 (339)
T ss_pred HHHHHHHHHHccCCcEEEEEecccccCh------HHHHHHHHHHhhccCCccccccccc
Confidence 33444444333 3788999999744332 1223566677777886655544443
No 191
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.12 E-value=0.011 Score=51.21 Aligned_cols=40 Identities=28% Similarity=0.296 Sum_probs=33.6
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
..+.+. |..|+||||++..+|..+...++.++.++.+...
T Consensus 3 ~~~~l~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 3 EVILIV-GPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CEEEEE-CCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 356666 7799999999999999998877788888888754
No 192
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=96.09 E-value=0.033 Score=61.69 Aligned_cols=68 Identities=9% Similarity=-0.030 Sum_probs=48.8
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 283 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 283 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
|+++.+.|||||+...........+..+|.+++|+.............++.+...+++. -+++|+.+.
T Consensus 61 ~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~-IVviNKiD~ 128 (594)
T TIGR01394 61 YNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKP-IVVINKIDR 128 (594)
T ss_pred ECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCE-EEEEECCCC
Confidence 57788999999864332222222355679999999887655666777888888889886 478899774
No 193
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.08 E-value=0.0083 Score=55.86 Aligned_cols=38 Identities=21% Similarity=0.170 Sum_probs=33.5
Q ss_pred EEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 182 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 182 av~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
.+..|.+|+|||+++.+++...++.|.+|+++.++...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~ 39 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESP 39 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCH
Confidence 34559999999999999999999999999999998643
No 194
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.07 E-value=0.0083 Score=55.93 Aligned_cols=38 Identities=29% Similarity=0.328 Sum_probs=33.9
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
|+|. |..|+||||+|..|+..|...|.++.+|.+|-..
T Consensus 2 i~i~-G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 2 VGIA-GPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 5555 8999999999999999999999999999998655
No 195
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=96.07 E-value=0.1 Score=47.43 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=25.9
Q ss_pred EEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 183 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 183 v~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+.+|--|+||||+...+.... .|+++.++-.|.
T Consensus 4 ~l~G~~GsGKTtl~~~l~~~~--~~~~~~~i~~~~ 36 (158)
T cd03112 4 VLTGFLGAGKTTLLNHILTEQ--HGRKIAVIENEF 36 (158)
T ss_pred EEEECCCCCHHHHHHHHHhcc--cCCcEEEEecCC
Confidence 344889999999999887653 488888877665
No 196
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.0072 Score=62.15 Aligned_cols=37 Identities=30% Similarity=0.364 Sum_probs=32.2
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
-+...++-.|.||||+-.++|..||+++ +||.|...-
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEE 130 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEE 130 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCc
Confidence 3444569999999999999999999998 999998765
No 197
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.06 E-value=0.011 Score=53.15 Aligned_cols=39 Identities=31% Similarity=0.475 Sum_probs=33.6
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
++++.|.|+ |..||||||++.-+|-.|.+.|++|.-+=+
T Consensus 3 ~~~mki~IT-G~PGvGKtTl~~ki~e~L~~~g~kvgGf~t 41 (179)
T COG1618 3 KMAMKIFIT-GRPGVGKTTLVLKIAEKLREKGYKVGGFIT 41 (179)
T ss_pred CcceEEEEe-CCCCccHHHHHHHHHHHHHhcCceeeeEEe
Confidence 466778888 999999999999999999999999875533
No 198
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=96.02 E-value=0.021 Score=59.51 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=38.2
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
.++++|.|+ +..|+||||+...|...|.++|++|.+|--|..+
T Consensus 203 ~~~~~~~~~-g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h~ 245 (366)
T PRK14489 203 GAPPLLGVV-GYSGTGKTTLLEKLIPELIARGYRIGLIKHSHHR 245 (366)
T ss_pred CCccEEEEe-cCCCCCHHHHHHHHHHHHHHcCCEEEEEEECCcc
Confidence 357899999 7789999999999999999999999999977644
No 199
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=96.01 E-value=0.028 Score=57.36 Aligned_cols=41 Identities=29% Similarity=0.506 Sum_probs=35.9
Q ss_pred eEEEEEeC-cCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 179 NIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 179 kiIav~s~-KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
.||+|-|- .||+|||+++..||..|.++|++|.+|.=...+
T Consensus 50 pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg~ 91 (325)
T PRK00652 50 PVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYGG 91 (325)
T ss_pred CEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCCC
Confidence 48999665 699999999999999999999999999876644
No 200
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=96.01 E-value=0.19 Score=56.96 Aligned_cols=95 Identities=20% Similarity=0.119 Sum_probs=60.8
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009574 283 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 362 (532)
Q Consensus 283 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 362 (532)
|+++.+.++|||+-..........+..+|.+++|+.....-.......++.+...+.+.+ +++|+++..... -
T Consensus 72 ~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~------~ 144 (689)
T TIGR00484 72 WKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRI-AFVNKMDKTGAN------F 144 (689)
T ss_pred ECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEE-EEEECCCCCCCC------H
Confidence 578889999998743322222233556799999988765433445667777788888865 789997754311 1
Q ss_pred CchHHHHHHHhCCCc-EEeccCc
Q 009574 363 RGSGSQVVQQFGIPH-LFDLPIR 384 (532)
Q Consensus 363 ~~~~~~l~~~~g~~~-l~~IP~~ 384 (532)
....+++.+.++... ...+|..
T Consensus 145 ~~~~~~i~~~l~~~~~~~~ipis 167 (689)
T TIGR00484 145 LRVVNQIKQRLGANAVPIQLPIG 167 (689)
T ss_pred HHHHHHHHHHhCCCceeEEeccc
Confidence 135677778777543 3446653
No 201
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=95.99 E-value=0.025 Score=62.67 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=37.3
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
+|++|+|+ +..|+||||+...|...|.++|+||..|--|..+
T Consensus 9 ~~~vi~iv-G~s~sGKTTlie~li~~L~~~G~rVavIKh~~h~ 50 (597)
T PRK14491 9 SIPLLGFC-AYSGTGKTTLLEQLIPELNQRGLRLAVIKHAHHN 50 (597)
T ss_pred CccEEEEE-cCCCCCHHHHHHHHHHHHHhCCceEEEEEcCCcC
Confidence 47899999 6689999999999999999999999999986543
No 202
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=95.99 E-value=0.031 Score=50.29 Aligned_cols=67 Identities=13% Similarity=0.088 Sum_probs=38.3
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
.+.+.++|||+..............+|.+++|+..+..-.......+..++..+.+.+-+++|+++.
T Consensus 50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl 116 (164)
T cd04171 50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADL 116 (164)
T ss_pred CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccc
Confidence 4568899997642222222222446788999988765222333333444554555345688899764
No 203
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.97 E-value=0.038 Score=51.67 Aligned_cols=36 Identities=33% Similarity=0.504 Sum_probs=30.7
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
.|.|. +-.|.||||.|..+|...+..|+||++|=+=
T Consensus 24 ~v~v~-~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFl 59 (191)
T PRK05986 24 LLIVH-TGNGKGKSTAAFGMALRAVGHGKKVGVVQFI 59 (191)
T ss_pred eEEEE-CCCCCChHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 44555 6678999999999999999999999998764
No 204
>PLN03127 Elongation factor Tu; Provisional
Probab=95.94 E-value=0.084 Score=56.49 Aligned_cols=68 Identities=12% Similarity=0.235 Sum_probs=48.8
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
+++.+++||||+-..........+..+|.+++|+.....-.......+..+...+++.+-+++|+.+.
T Consensus 122 ~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDl 189 (447)
T PLN03127 122 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDV 189 (447)
T ss_pred CCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeecc
Confidence 55678999998743333323333456899999998865444556778888888899877778899764
No 205
>PRK13351 elongation factor G; Reviewed
Probab=95.93 E-value=0.044 Score=62.07 Aligned_cols=94 Identities=18% Similarity=0.149 Sum_probs=61.5
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009574 283 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 362 (532)
Q Consensus 283 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 362 (532)
|+.+.+.++|||+...........+..+|.+++|+.............++.+...+.+++ +++|+.+..... -
T Consensus 70 ~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-iviNK~D~~~~~------~ 142 (687)
T PRK13351 70 WDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRL-IFINKMDRVGAD------L 142 (687)
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEECCCCCCCC------H
Confidence 467889999998743322222333556799999988766544456677777877788865 788997643321 1
Q ss_pred CchHHHHHHHhCCCcE-EeccC
Q 009574 363 RGSGSQVVQQFGIPHL-FDLPI 383 (532)
Q Consensus 363 ~~~~~~l~~~~g~~~l-~~IP~ 383 (532)
...++++.+.++.... ..+|.
T Consensus 143 ~~~~~~i~~~l~~~~~~~~~P~ 164 (687)
T PRK13351 143 FKVLEDIEERFGKRPLPLQLPI 164 (687)
T ss_pred HHHHHHHHHHHCCCeEEEEecc
Confidence 2467788888887544 23554
No 206
>PHA02542 41 41 helicase; Provisional
Probab=95.93 E-value=0.0099 Score=63.87 Aligned_cols=41 Identities=22% Similarity=0.105 Sum_probs=36.0
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 220 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~ 220 (532)
-+.+.++..|+||||++.|+|...++.|++|++++++....
T Consensus 191 ~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ 231 (473)
T PHA02542 191 TLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEE 231 (473)
T ss_pred cEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHH
Confidence 45556699999999999999999999999999999998553
No 207
>PRK06762 hypothetical protein; Provisional
Probab=95.93 E-value=0.01 Score=54.36 Aligned_cols=39 Identities=26% Similarity=0.431 Sum_probs=30.7
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
|+++|.++ |..|+||||+|..|+..+ |..+.+++.|...
T Consensus 1 m~~li~i~-G~~GsGKST~A~~L~~~l---~~~~~~i~~D~~r 39 (166)
T PRK06762 1 MTTLIIIR-GNSGSGKTTIAKQLQERL---GRGTLLVSQDVVR 39 (166)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHh---CCCeEEecHHHHH
Confidence 45667665 999999999999999887 4568888876543
No 208
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=95.92 E-value=0.1 Score=48.92 Aligned_cols=67 Identities=9% Similarity=-0.029 Sum_probs=42.5
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
+.+.+.|+|||+...........+..+|.+++|+.............+..+...+.++ -+++|+++.
T Consensus 63 ~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~-iiv~NK~Dl 129 (194)
T cd01891 63 KDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKP-IVVINKIDR 129 (194)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCE-EEEEECCCC
Confidence 5678899999864332222222345678999998876543344445555555567774 578899775
No 209
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.90 E-value=0.014 Score=56.72 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=32.2
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHC------CCcEEEEEcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~------G~rVllID~D~~ 218 (532)
+.++.++ |..|+|||+++.++|...... +.+|+.||++..
T Consensus 19 g~i~~i~-G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~ 64 (235)
T cd01123 19 GSITEIF-GEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGT 64 (235)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCC
Confidence 3566666 899999999999999876543 479999999863
No 210
>PRK15453 phosphoribulokinase; Provisional
Probab=95.89 E-value=0.015 Score=57.64 Aligned_cols=42 Identities=19% Similarity=0.327 Sum_probs=37.5
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 220 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~ 220 (532)
..+|+|+ |-.|+||||+|..|+..|.+.|.++.+|+.|.+..
T Consensus 5 ~piI~It-G~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 5 HPIIAVT-GSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 4588888 88999999999999999988888999999998774
No 211
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=95.85 E-value=0.019 Score=53.79 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=38.5
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 222 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~ 222 (532)
||+.-.++-|-.|+||||-+.++-...-..|+++-+|.+||..-..
T Consensus 1 mm~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f 46 (273)
T KOG1534|consen 1 MMRYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHF 46 (273)
T ss_pred CCceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhh
Confidence 4555555668899999999999999999999999999999976443
No 212
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=95.82 E-value=0.036 Score=56.21 Aligned_cols=41 Identities=37% Similarity=0.496 Sum_probs=36.6
Q ss_pred eEEEEEeCc-CCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 179 NIVAVSSCK-GGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 179 kiIav~s~K-GGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
.||+|.|-- ||+|||-++..||..|.++|++|.+|.=...+
T Consensus 29 PVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 70 (311)
T TIGR00682 29 PVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYGS 70 (311)
T ss_pred CEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEECCCCCC
Confidence 489999886 99999999999999999999999999865543
No 213
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=95.81 E-value=0.03 Score=55.05 Aligned_cols=70 Identities=14% Similarity=0.226 Sum_probs=52.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccC
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 353 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~ 353 (532)
..-.|--+|||.-.....-.+.....+|++++|+....-.+-+++.-+-+.++.|++.+-+++|+++.-.
T Consensus 73 ~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvd 142 (394)
T COG0050 73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVD 142 (394)
T ss_pred CCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccC
Confidence 4556889999875443332233344679999999888777777777777888999999999999987544
No 214
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=95.80 E-value=0.06 Score=53.96 Aligned_cols=164 Identities=17% Similarity=0.250 Sum_probs=94.8
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 256 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 256 (532)
.+++|++.+.-.-+||=|+|..|..+|.++|.++..+-+...+-.. . ..|+ +
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQTGimi----------------------a-~~Gv---~-- 162 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQTGIMI----------------------A-GYGV---P-- 162 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SHHHHHC----------------------H-SEC-------
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCCceEEE----------------------e-cCCe---e--
Confidence 5689999999999999999999999999999999999887654110 0 0010 0
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChh-----hhhhhhhcCCCeEEEEeCCCcc--------h
Q 009574 257 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-----QLTLCQVVPLTAAVIVTTPQKL--------A 323 (532)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~-----~~~~~~~~~~d~viiV~~p~~~--------s 323 (532)
............++.+...... +.|++||-.-.++... .+.+..-..-|.+++...|... .
T Consensus 163 -----iDav~~DFvaGavE~~v~~~~~-~~d~ivVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL~H~p~r~~~~~~p~~~ 236 (301)
T PF07755_consen 163 -----IDAVPSDFVAGAVEALVPEAAE-EHDWIVVEGQGSLSHPAYSGVSLGLLHGSQPDALVLCHAPGRKHRDGFPHYP 236 (301)
T ss_dssp -----GGGSBGGGHHHHHHHHHHHHCC-C-SEEEEE--S-TTSTTTHHCHHHHHHHH--SEEEEEEETT-SC-TTSTTSC
T ss_pred -----ccchhhhhHHHHHHHHHHhhCc-CCCEEEEeccccccCccccccchhhhccCCCCeEEEEecCCcccccCCCcCC
Confidence 0012233445667777666542 5599999987665432 2233333456999999988443 2
Q ss_pred HHHHHHHHHHHHcCC-----CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEe
Q 009574 324 FIDVAKGVRMFSKLK-----VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 380 (532)
Q Consensus 324 ~~~~~~~i~~l~~~~-----~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~ 380 (532)
+..+.+.+++++.+. .+++|+-+|-...+.. --....+++.++||+|..-.
T Consensus 237 ip~l~~~I~l~e~la~~~~~~~VvgIslNt~~l~~~------e~~~~~~~~~~e~glPv~Dp 292 (301)
T PF07755_consen 237 IPPLEEEIELIEALAGTKPPAKVVGISLNTSGLSEE------EAKAAIERIEEELGLPVTDP 292 (301)
T ss_dssp ---HHHHHHHHHHCCCGC---EEEEEECC-TTS-HH------HHHHHHHHHHHHH-S-EE-H
T ss_pred CCCHHHHHHHHHHhhccCCCccEEEEEEECCCCCHH------HHHHHHHHHHHHHCCCeeec
Confidence 345666666666543 2389999997443321 11246778888898776543
No 215
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.79 E-value=0.012 Score=53.04 Aligned_cols=36 Identities=33% Similarity=0.322 Sum_probs=32.1
Q ss_pred EeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 184 SSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 184 ~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
..|..|+||||+|..|+..+...|.++.++|.|...
T Consensus 4 i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 4 LTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 349999999999999999999989999999988754
No 216
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.77 E-value=0.011 Score=50.72 Aligned_cols=32 Identities=41% Similarity=0.459 Sum_probs=24.2
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
+|.|. |..|+||||+|..||..+ |..++-+|.
T Consensus 1 vI~I~-G~~gsGKST~a~~La~~~---~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIIS-GPPGSGKSTLAKELAERL---GFPVISMDD 32 (121)
T ss_dssp EEEEE-ESTTSSHHHHHHHHHHHH---TCEEEEEHH
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHH---CCeEEEecc
Confidence 34555 999999999999999877 666554443
No 217
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=95.74 E-value=0.068 Score=51.61 Aligned_cols=66 Identities=17% Similarity=0.062 Sum_probs=46.2
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCH 350 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~ 350 (532)
..+.+.|+|||+...........+..+|.+++|+.....-.......++.+...+.+ +-+++|+++
T Consensus 71 ~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p-~ilviNKiD 136 (222)
T cd01885 71 NEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVK-PVLVINKID 136 (222)
T ss_pred CceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCC
Confidence 467889999998554433334446678999999887665445556677777666777 457889976
No 218
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.73 E-value=0.012 Score=61.32 Aligned_cols=37 Identities=30% Similarity=0.385 Sum_probs=32.3
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+.+..+..|+||||++..+|..+++.|.+|+.|+...
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE 120 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE 120 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 3444589999999999999999999999999999864
No 219
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=95.71 E-value=0.036 Score=58.61 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=45.8
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 283 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 283 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
++++.+.|||||+-..........+..+|.+++|+.....-.....+.+..+...+.+.+-+++|+.+.
T Consensus 77 ~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~ 145 (406)
T TIGR02034 77 TDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDL 145 (406)
T ss_pred cCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccc
Confidence 356789999998732222222334557899999988765444445556666777777766789999764
No 220
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.70 E-value=0.016 Score=56.94 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=36.2
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 220 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~ 220 (532)
+|+|+ |-.|+||||++..|+..|.+.|.+|.+|+.|.+..
T Consensus 1 IIgIt-G~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVT-GSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 47776 78999999999999999999999999999998875
No 221
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.66 E-value=0.022 Score=54.30 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=33.2
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
...+|+++ |..|+||||++..|+..+ .+.++.+++.|...
T Consensus 5 ~~~iI~I~-G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~~ 44 (209)
T PRK05480 5 KPIIIGIA-GGSGSGKTTVASTIYEEL--GDESIAVIPQDSYY 44 (209)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHh--CCCceEEEeCCccc
Confidence 34577777 899999999999999988 45689999998754
No 222
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.64 E-value=0.023 Score=61.59 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=34.7
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
.+.+.++-.|+||||++.+++...+++|.+|+.+-++-.
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs 302 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACANKERAILFAYEES 302 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC
Confidence 455556999999999999999999999999999999874
No 223
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=95.63 E-value=0.42 Score=43.86 Aligned_cols=86 Identities=10% Similarity=0.160 Sum_probs=48.9
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCcccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYY 359 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~i~~l~~~----~~~~~gvV~N~~~~~~~~~~~~ 359 (532)
.+.+-|+|+|+...........+..+|.+++|...+ ..++..+...+..+... +.+ +.+|.|+++.....
T Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~---- 136 (180)
T cd04127 62 RIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPD-IVLCGNKADLEDQR---- 136 (180)
T ss_pred EEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEeCccchhcC----
Confidence 456889999864322122222244678888887765 45666776666666542 333 56889997753211
Q ss_pred ccCCchHHHHHHHhCC
Q 009574 360 PFGRGSGSQVVQQFGI 375 (532)
Q Consensus 360 ~~~~~~~~~l~~~~g~ 375 (532)
....+..+++.+.++.
T Consensus 137 ~v~~~~~~~~~~~~~~ 152 (180)
T cd04127 137 QVSEEQAKALADKYGI 152 (180)
T ss_pred ccCHHHHHHHHHHcCC
Confidence 1122345566666654
No 224
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.60 E-value=0.016 Score=54.28 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=29.8
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHH----------CCCcEEEEEcCCCC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAG----------MGARVGIFDADVYG 219 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~----------~G~rVllID~D~~~ 219 (532)
+.+..+.+|+||||++.++|..++. .+.+|+.|+++...
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 4555599999999999999999996 57899999999753
No 225
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=95.55 E-value=0.024 Score=54.63 Aligned_cols=70 Identities=14% Similarity=0.057 Sum_probs=43.0
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch-------HHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 283 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-------FIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 283 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s-------~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
++.+.+.++|||+...........+..+|.+++|+...... ...+.+.+......+.+.+-+++|+.+..
T Consensus 74 ~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~ 150 (219)
T cd01883 74 TEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDV 150 (219)
T ss_pred eCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccc
Confidence 46788999999863222222222344579999998876531 12344445555566655566789997643
No 226
>PHA00729 NTP-binding motif containing protein
Probab=95.53 E-value=0.022 Score=54.79 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=20.4
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHH
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLA 204 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA 204 (532)
.|.++ |..|+||||+|..||..+.
T Consensus 19 nIlIt-G~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIF-GKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHH
Confidence 45555 8899999999999999875
No 227
>PRK09354 recA recombinase A; Provisional
Probab=95.52 E-value=0.026 Score=57.93 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=33.8
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+++-|+ |-.|+||||+|.+++...++.|.+|+.||+.-
T Consensus 61 ~IteI~-G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~ 98 (349)
T PRK09354 61 RIVEIY-GPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 98 (349)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEECCcc
Confidence 466666 78999999999999999999999999999975
No 228
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=95.52 E-value=0.058 Score=50.57 Aligned_cols=67 Identities=16% Similarity=0.095 Sum_probs=37.7
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
..+.+.++|||+-.............+|.+++|+.............+......+.++ -+++|+++.
T Consensus 66 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~-iiv~NK~Dl 132 (192)
T cd01889 66 ENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKL-IVVLNKIDL 132 (192)
T ss_pred cCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCE-EEEEECccc
Confidence 5788999999863221111112233468889888876432222223333444456664 478899764
No 229
>PF13245 AAA_19: Part of AAA domain
Probab=95.50 E-value=0.026 Score=44.61 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=29.3
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHC----CCcEEEEEcC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGM----GARVGIFDAD 216 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~----G~rVllID~D 216 (532)
+.+..+-.|+|||+++++++..+... |.+|+++-..
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 34555889999999999999999865 8899998543
No 230
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.45 E-value=0.022 Score=56.35 Aligned_cols=38 Identities=24% Similarity=0.168 Sum_probs=33.2
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
.+.+..|..|+||||+|.++|...+++|.+|+.|+++.
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 34444599999999999999999999999999999984
No 231
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=95.45 E-value=0.015 Score=57.97 Aligned_cols=43 Identities=28% Similarity=0.475 Sum_probs=33.7
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHH----CC------CcEEEEEcCCCCCCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAG----MG------ARVGIFDADVYGPSL 222 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~----~G------~rVllID~D~~~~s~ 222 (532)
+..|.-+-||+||||++..|..+|+. .| .+|+.|.+....+++
T Consensus 90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~ 142 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDI 142 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHH
Confidence 44555599999999999999999884 24 479999988877653
No 232
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=95.44 E-value=0.14 Score=47.37 Aligned_cols=42 Identities=17% Similarity=0.037 Sum_probs=32.0
Q ss_pred cccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 173 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 173 ~~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
.....+.+...+ | .|=||||-|..+|...+-+|+||++|=+=
T Consensus 17 ~~~~~Gli~VYt-G-dGKGKTTAAlGlalRAaG~G~rV~iiQFl 58 (178)
T PRK07414 17 PYTIEGLVQVFT-S-SQRNFFTSVMAQALRIAGQGTPVLIVQFL 58 (178)
T ss_pred CCCCCCEEEEEe-C-CCCCchHHHHHHHHHHhcCCCEEEEEEEe
Confidence 333444455544 3 56799999999999999999999999663
No 233
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=95.43 E-value=0.038 Score=59.11 Aligned_cols=68 Identities=16% Similarity=0.114 Sum_probs=50.3
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchH-------HHHHHHHHHHHcCCCCEEEEEEeccc
Q 009574 283 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCH 350 (532)
Q Consensus 283 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~-------~~~~~~i~~l~~~~~~~~gvV~N~~~ 350 (532)
++.+.+.|||||+-..........+..+|.+++|+.+..-.+ ..+.+.+..+...|++.+-+++|+.+
T Consensus 82 ~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD 156 (446)
T PTZ00141 82 TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMD 156 (446)
T ss_pred cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccc
Confidence 478899999999744333333344567899999988775432 46777888888899998889999976
No 234
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.42 E-value=0.021 Score=56.73 Aligned_cols=37 Identities=30% Similarity=0.441 Sum_probs=32.7
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHC-CCcEEEEEcCC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 217 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~-G~rVllID~D~ 217 (532)
+.+..+..|+||||++.++|..++.. |.+|+.+.++.
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~ 69 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE 69 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence 44455999999999999999999887 99999999976
No 235
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=95.40 E-value=0.19 Score=50.00 Aligned_cols=66 Identities=15% Similarity=0.120 Sum_probs=40.3
Q ss_pred CCCCEEEEcCCCCCChh-hh-------hhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDI-QL-------TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~-~~-------~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
+.+.++++|||+-.... .+ ....+..+|.+++|+..+...... ...++.+...+.++ -+|+|+++.
T Consensus 46 ~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~-ilV~NK~Dl 119 (270)
T TIGR00436 46 GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPV-VLTRNKLDN 119 (270)
T ss_pred CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCE-EEEEECeeC
Confidence 34568999998632210 00 112234678899998876543333 45566676777775 478899764
No 236
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.40 E-value=0.029 Score=52.36 Aligned_cols=43 Identities=30% Similarity=0.357 Sum_probs=35.8
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
+++.+|.++ |..|+||||++..|+..+...|..++++|.|.-.
T Consensus 16 ~~~~~i~i~-G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 16 HRGVVIWLT-GLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 445677666 8889999999999999998888889999887644
No 237
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.40 E-value=0.017 Score=56.70 Aligned_cols=36 Identities=33% Similarity=0.369 Sum_probs=32.0
Q ss_pred EEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 183 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 183 v~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
+..|.+|+||||+|..||..|...|++|.++|.|.-
T Consensus 3 vl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 3 ILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 445999999999999999999999999999988753
No 238
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=95.38 E-value=0.12 Score=54.47 Aligned_cols=68 Identities=16% Similarity=0.303 Sum_probs=46.5
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
+.+.+.|||||+-.............+|.+++|+.....-.....+.+..+...+++.+-+++|+.+.
T Consensus 73 ~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl 140 (394)
T TIGR00485 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (394)
T ss_pred CCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEeccc
Confidence 45678999998743222222233445799999988776444556677778888888877778999764
No 239
>PLN03126 Elongation factor Tu; Provisional
Probab=95.33 E-value=0.1 Score=56.21 Aligned_cols=68 Identities=13% Similarity=0.193 Sum_probs=48.2
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
+++.+.+||||+-..........+..+|.+++|+.....-.....+.+..+...+++.+-+++|+.+.
T Consensus 142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl 209 (478)
T PLN03126 142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQ 209 (478)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 56678999998633222222333456799999988775555566777888888899877788999774
No 240
>PRK12736 elongation factor Tu; Reviewed
Probab=95.31 E-value=0.11 Score=54.64 Aligned_cols=68 Identities=13% Similarity=0.240 Sum_probs=47.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
+.+.+.+||||+-.............+|.+++|+.....-.......+..+...+++.+-+++|+.+.
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~ 140 (394)
T PRK12736 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDL 140 (394)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCC
Confidence 56678999998732222222333446799999988776444556677778888888877788999764
No 241
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=95.28 E-value=0.28 Score=43.27 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=44.5
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC---CCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK---VPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~~---~~~~gvV~N~~~~~ 352 (532)
..+++.++|+|+...........+..+|.+++++.++. .+...+...+..+.... .+ +-+|.|+++..
T Consensus 47 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~ 118 (159)
T cd00154 47 KTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIP-IILVGNKIDLE 118 (159)
T ss_pred EEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEccccc
Confidence 45688999998754332223333456789888888765 45667777776666543 44 56888997653
No 242
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=95.22 E-value=0.12 Score=45.41 Aligned_cols=66 Identities=15% Similarity=0.044 Sum_probs=40.5
Q ss_pred CCCEEEEcCCCCCChh-------hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 285 ELDYLVIDMPPGTGDI-------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~-------~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
.++++++|+|+..... .........+|.+++|+.+..............+...+.+. -+|+|+++.
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~-ivv~nK~D~ 116 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPV-LLVLNKIDL 116 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeE-EEEEEcccc
Confidence 6789999998732211 11112244578888888877665444444455555556664 588899664
No 243
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.21 E-value=0.035 Score=51.35 Aligned_cols=39 Identities=26% Similarity=0.239 Sum_probs=33.5
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+.+|.|. |-.|+||||++..|+..|...+..+.++|.|.
T Consensus 7 ~~~I~i~-G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~ 45 (176)
T PRK05541 7 GYVIWIT-GLAGSGKTTIAKALYERLKLKYSNVIYLDGDE 45 (176)
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH
Confidence 4577776 88999999999999999998888899998654
No 244
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.18 E-value=0.022 Score=58.36 Aligned_cols=39 Identities=33% Similarity=0.284 Sum_probs=34.3
Q ss_pred EEEeCcCCCcHHHHHHHHHHHHH-HCCCcEEEEEcCCCCC
Q 009574 182 AVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGP 220 (532)
Q Consensus 182 av~s~KGGvGKTTlA~nLA~~LA-~~G~rVllID~D~~~~ 220 (532)
++..|-.|+||||++..|+..|. ..|++|.++|.|-.-+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 56669999999999999999998 5899999999997543
No 245
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=95.18 E-value=0.87 Score=42.24 Aligned_cols=67 Identities=9% Similarity=-0.004 Sum_probs=40.5
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEecccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHF 351 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~~--~~~~gvV~N~~~~ 351 (532)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...++.+.... ...+-+|.|+.+.
T Consensus 48 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl 117 (188)
T cd04125 48 IIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDL 117 (188)
T ss_pred EEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCC
Confidence 4577899998743222222222446788888877653 45666666666555432 1246788899764
No 246
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.16 E-value=0.029 Score=54.62 Aligned_cols=38 Identities=24% Similarity=0.411 Sum_probs=33.3
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHC-CCcEEEEEcCCC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVY 218 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~-G~rVllID~D~~ 218 (532)
+.+.++..|+|||+++.++|..++.. |.+|+.+.++..
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~ 53 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMS 53 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCC
Confidence 34445999999999999999999987 999999999873
No 247
>PRK05439 pantothenate kinase; Provisional
Probab=95.14 E-value=0.041 Score=55.71 Aligned_cols=43 Identities=28% Similarity=0.305 Sum_probs=36.1
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHC--CCcEEEEEcCCCC
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDADVYG 219 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~--G~rVllID~D~~~ 219 (532)
+.+.+|+|+ |-.|+||||+|..|+..|.+. |.+|.+|..|-..
T Consensus 84 ~~~~iIgIa-G~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 84 KVPFIIGIA-GSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 345678887 889999999999999999864 7899999999764
No 248
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=95.11 E-value=0.18 Score=46.19 Aligned_cols=66 Identities=12% Similarity=0.018 Sum_probs=38.9
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
..+.+.|+|||+..............+|.+++|+..... +.... ..+..+...+.+ +-+|+|+.+.
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~~~~~~-iiiv~NK~Dl 131 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLALENNLE-IIPVINKIDL 131 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHHHcCCC-EEEEEECCCC
Confidence 467788999987433222222234567999999887652 22222 222333345666 4578899774
No 249
>CHL00071 tufA elongation factor Tu
Probab=95.03 E-value=0.19 Score=53.23 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=47.8
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
+.+.+++||||+--.........+..+|.+++|+.+...-.......+..+...+++.+-+++|+.+.
T Consensus 73 ~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~ 140 (409)
T CHL00071 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQ 140 (409)
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCC
Confidence 56678999998732222222333456799999998876545566777888888898877788999765
No 250
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=95.02 E-value=0.36 Score=43.59 Aligned_cols=67 Identities=13% Similarity=0.086 Sum_probs=39.0
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc----CCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~ 351 (532)
+.+.+.++|+|+...........+..++.+++|+..... ++......+..+.+ .+.+ +-+|+|+++.
T Consensus 48 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~ 119 (167)
T cd04160 48 GNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVP-LLILANKQDL 119 (167)
T ss_pred CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCC-EEEEEEcccc
Confidence 466789999986332222222224567888888876543 34444444443322 3556 5578899764
No 251
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.00 E-value=0.023 Score=53.24 Aligned_cols=40 Identities=28% Similarity=0.233 Sum_probs=33.9
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
+.|.++ |-+|+||||.|-+||..|.+.+.+|.-+..|...
T Consensus 2 pLiIlT-GyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~ 41 (261)
T COG4088 2 PLIILT-GYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLR 41 (261)
T ss_pred ceEEEe-cCCCCCchHHHHHHHHHHHHhhhhccccchhhhh
Confidence 345555 9999999999999999999999999988887643
No 252
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=94.97 E-value=0.053 Score=48.12 Aligned_cols=51 Identities=27% Similarity=0.294 Sum_probs=42.0
Q ss_pred cccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCC
Q 009574 173 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT 224 (532)
Q Consensus 173 ~~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~ 224 (532)
.++..+-+|=++ +-.|+||||+|..|..+|-++|+-.-.+|.|--+..+..
T Consensus 26 l~~qkGcviWiT-GLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~ 76 (207)
T KOG0635|consen 26 LLKQKGCVIWIT-GLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNK 76 (207)
T ss_pred HhcCCCcEEEEe-ccCCCCchhHHHHHHHHHHhcCceEEEecCccccccccc
Confidence 345556688888 889999999999999999999999999999976544433
No 253
>PRK15494 era GTPase Era; Provisional
Probab=94.96 E-value=0.28 Score=50.56 Aligned_cols=66 Identities=12% Similarity=0.173 Sum_probs=38.5
Q ss_pred CCCCEEEEcCCCCCCh---hhh-----hhhhhcCCCeEEEEeCCCcchHHHH-HHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGD---IQL-----TLCQVVPLTAAVIVTTPQKLAFIDV-AKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~---~~~-----~~~~~~~~d~viiV~~p~~~s~~~~-~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
+++.++++|||+.... ... ....+..+|.+++|+.... ++... ...++.++..+.+.+ +|+|+++.
T Consensus 98 ~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~-s~~~~~~~il~~l~~~~~p~I-lViNKiDl 172 (339)
T PRK15494 98 KDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK-SFDDITHNILDKLRSLNIVPI-FLLNKIDI 172 (339)
T ss_pred CCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCEE-EEEEhhcC
Confidence 4556899999864221 000 0112346788888887544 22222 345666666666665 68899775
No 254
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=94.95 E-value=0.26 Score=47.62 Aligned_cols=64 Identities=6% Similarity=-0.004 Sum_probs=41.7
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
...++++|||.... ..+ .....+|.+++++.....-......+++.+...+.+.+-+|+|+.+.
T Consensus 82 ~~~i~~vDtPg~~~-~~l--~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~ 145 (225)
T cd01882 82 KRRLTFIECPNDIN-AMI--DIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDL 145 (225)
T ss_pred CceEEEEeCCchHH-HHH--HHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 44578999986441 112 22345788888887765433444567778877788865568899764
No 255
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=94.95 E-value=1 Score=40.72 Aligned_cols=68 Identities=10% Similarity=0.074 Sum_probs=41.5
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~~--~~~~gvV~N~~~~~ 352 (532)
.+.+.|.|+|+..............++.+++|...+. .++..+...++.+.... ...+-+|.|+++..
T Consensus 50 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~ 120 (166)
T cd04122 50 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120 (166)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 4678899998643222222222446788888877654 56666666666554432 22467888997643
No 256
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.93 E-value=0.17 Score=48.20 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=33.0
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
..++|+|+ |--|+||||+..+++..+.. +++|.++..|..
T Consensus 21 ~~~~i~~~-G~~gsGKTTli~~l~~~~~~-~~~v~v~~~~~~ 60 (207)
T TIGR00073 21 GLVVLNFM-SSPGSGKTTLIEKLIDNLKD-EVKIAVIEGDVI 60 (207)
T ss_pred CcEEEEEE-CCCCCCHHHHHHHHHHHHhc-CCeEEEEECCCC
Confidence 35688888 88899999999999887753 579999998874
No 257
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.92 E-value=0.033 Score=52.47 Aligned_cols=38 Identities=32% Similarity=0.409 Sum_probs=31.7
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCc----EEEEEcCCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGAR----VGIFDADVY 218 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~r----VllID~D~~ 218 (532)
||+|+ |-+|+||||+|..|+..|.+.|.. +.++..|..
T Consensus 1 IIgI~-G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~ 42 (194)
T PF00485_consen 1 IIGIA-GPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDF 42 (194)
T ss_dssp EEEEE-ESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGG
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHhCccCcCccceeEEEeeccc
Confidence 56777 889999999999999999988876 677777653
No 258
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.92 E-value=0.047 Score=42.21 Aligned_cols=32 Identities=44% Similarity=0.546 Sum_probs=27.4
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
|+++ |-.|+||||++..|+..| .|.++.++|.
T Consensus 2 i~i~-G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 2 IAIT-GGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 4555 889999999999999999 6788888876
No 259
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=94.87 E-value=0.51 Score=44.44 Aligned_cols=66 Identities=12% Similarity=0.044 Sum_probs=39.5
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC--CCCEEEEEEeccccc
Q 009574 286 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL--KVPCIAVVENMCHFD 352 (532)
Q Consensus 286 yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~i~~l~~~--~~~~~gvV~N~~~~~ 352 (532)
+.+.|+|+|+......+.......++.+++|.... ..++..+...++.+... ..+ +-+|.|+.+..
T Consensus 55 ~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~p-iivVgNK~Dl~ 123 (199)
T cd04110 55 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVC-KVLVGNKNDDP 123 (199)
T ss_pred EEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccc
Confidence 46789999764322222222244568888887764 45666676666666543 233 45788997643
No 260
>PRK12735 elongation factor Tu; Reviewed
Probab=94.84 E-value=0.18 Score=53.25 Aligned_cols=68 Identities=16% Similarity=0.308 Sum_probs=46.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
+...+++||||+-..........+..+|.+++|+.....-.....+.+..+...+++.+-+++|+.+.
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl 140 (396)
T PRK12735 73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred CCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCC
Confidence 45568999998742222222233456799999988765434455677777888888877778999775
No 261
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=94.84 E-value=0.6 Score=42.55 Aligned_cols=67 Identities=15% Similarity=0.113 Sum_probs=41.9
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL----KVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~i~~l~~~----~~~~~gvV~N~~~~ 351 (532)
+.+.+.|+|+|+...........+..++.+++|+..+.. ++..+...+..+... +.+ +-+|.|+.+.
T Consensus 41 ~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl 112 (167)
T cd04161 41 DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKP-ILVLANKQDK 112 (167)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCc-EEEEEeCCCC
Confidence 456789999987433222222334577889998887654 566666555555432 344 5688899764
No 262
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=94.84 E-value=0.54 Score=42.24 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=38.1
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~~ 352 (532)
.+.+.|+|+|+...........+..++.+++|...+. .++..+......+.. .+.+ +-+|.|+++..
T Consensus 47 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl~ 118 (164)
T smart00173 47 VCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVP-IVLVGNKCDLE 118 (164)
T ss_pred EEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccc
Confidence 4567789997743322222222445688877776553 455555555444432 2455 44788997753
No 263
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.83 E-value=0.071 Score=58.20 Aligned_cols=41 Identities=15% Similarity=0.032 Sum_probs=35.0
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHC-CCcEEEEEcCCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYG 219 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~-G~rVllID~D~~~ 219 (532)
+.++.++ +-.|+||||++.+++...+++ |.+|+.|.++...
T Consensus 31 Gs~~li~-G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~ 72 (509)
T PRK09302 31 GRPTLVS-GTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESP 72 (509)
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCH
Confidence 3566666 899999999999999988877 9999999998743
No 264
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=94.80 E-value=0.53 Score=43.21 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=37.3
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~~ 352 (532)
.|.+.|+|+|+..............++.++++...+ ..++..+....+.+.+ .+.+ +-++.|+++..
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~ 119 (180)
T cd04137 48 DYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVP-IVLVGNKSDLH 119 (180)
T ss_pred EEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEchhhh
Confidence 467889999774322222222233467777766544 3455555555444432 2445 45888997753
No 265
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.78 E-value=0.046 Score=54.05 Aligned_cols=40 Identities=28% Similarity=0.342 Sum_probs=33.7
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHC-CCcEEEEEcCCCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYG 219 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~-G~rVllID~D~~~ 219 (532)
-+.+.++..|+|||+++.|+|..++.. |++|+.+.++...
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~ 60 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSE 60 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-H
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCH
Confidence 345555999999999999999999997 6999999998744
No 266
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.78 E-value=0.042 Score=51.17 Aligned_cols=37 Identities=24% Similarity=0.246 Sum_probs=29.8
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
+-+.+. |..|+|||.+|..+|..+.+.|++|+.+++.
T Consensus 48 ~~l~l~-G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~ 84 (178)
T PF01695_consen 48 ENLILY-GPPGTGKTHLAVAIANEAIRKGYSVLFITAS 84 (178)
T ss_dssp -EEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred eEEEEE-hhHhHHHHHHHHHHHHHhccCCcceeEeecC
Confidence 345666 6789999999999999999999999999864
No 267
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.77 E-value=0.043 Score=54.16 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=32.5
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
.+-+.+. |+.|||||.+|+.+|..|.+.|.+|+++-+
T Consensus 105 ~~nl~l~-G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~ 141 (254)
T COG1484 105 GENLVLL-GPPGVGKTHLAIAIGNELLKAGISVLFITA 141 (254)
T ss_pred CCcEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 3456666 999999999999999999988999999875
No 268
>PLN00043 elongation factor 1-alpha; Provisional
Probab=94.77 E-value=0.088 Score=56.34 Aligned_cols=69 Identities=16% Similarity=0.062 Sum_probs=50.1
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchH-------HHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 283 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 283 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~-------~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
++.+-+.|||||+...........+..+|.+++|+......+ ..+++.+..+...+++.+-+++|+.+.
T Consensus 82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~ 157 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 157 (447)
T ss_pred CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccC
Confidence 467889999998743333333444567899999988876433 356777777888899878888999764
No 269
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=94.76 E-value=0.24 Score=46.94 Aligned_cols=66 Identities=11% Similarity=0.134 Sum_probs=40.1
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 286 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 286 yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
+-+.|+|||+...........+..+|.+++|+..... ........+..+...+.+.+-+|+|+.+.
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl 149 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDL 149 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhc
Confidence 6689999987432222223334456999999887652 11233345555555566545689999764
No 270
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.71 E-value=0.38 Score=40.89 Aligned_cols=63 Identities=19% Similarity=0.150 Sum_probs=37.8
Q ss_pred CCCCEEEEcCCCCCCh---------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEec
Q 009574 284 GELDYLVIDMPPGTGD---------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENM 348 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~---------~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~ 348 (532)
....++|+|||+-... ..........+|.+++|+..+...-.....+++.++ .+. .+-+|+|+
T Consensus 45 ~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~-~~i~v~NK 116 (116)
T PF01926_consen 45 NNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKK-PIILVLNK 116 (116)
T ss_dssp TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTS-EEEEEEES
T ss_pred ceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCC-CEEEEEcC
Confidence 3456789999884321 001222334678888898877733345566777775 344 46677775
No 271
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=94.70 E-value=0.31 Score=44.04 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=41.0
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~i~~l~~~---~~~~~gvV~N~~~~~ 352 (532)
.+.+.|+|+|+..............+|.++++...+.. ++..+...++.+... +.+ +-+|.|+++..
T Consensus 51 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~ 121 (165)
T cd01864 51 RVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVV-LLLIGNKCDLE 121 (165)
T ss_pred EEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECcccc
Confidence 35789999988432222222223457888888777653 566666666666543 344 45788997643
No 272
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.68 E-value=0.057 Score=52.47 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=34.3
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
.++.+. |-.|+||||+|.+++..+++.|.+++.++++..
T Consensus 25 ~~~~i~-G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~ 63 (230)
T PRK08533 25 SLILIE-GDESTGKSILSQRLAYGFLQNGYSVSYVSTQLT 63 (230)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 366666 999999999999999999999999999998763
No 273
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=94.65 E-value=0.15 Score=52.32 Aligned_cols=41 Identities=24% Similarity=0.398 Sum_probs=36.2
Q ss_pred eEEEEEeC-cCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 179 NIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 179 kiIav~s~-KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
.||+|-|- -||+|||-++..||..|.++|++|.+|.=...+
T Consensus 57 PVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 98 (338)
T PRK01906 57 PVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYGA 98 (338)
T ss_pred CEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 58888775 799999999999999999999999999876644
No 274
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=94.63 E-value=0.18 Score=52.42 Aligned_cols=86 Identities=14% Similarity=0.102 Sum_probs=61.3
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCC
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 363 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 363 (532)
.++-+=|+|||+-.....-+...+.++|.+++|+..-.---..+.++.+.++..++|++-+| |+.+-+.+. .-
T Consensus 79 ~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFi-NKlDR~~rd------P~ 151 (528)
T COG4108 79 ADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFI-NKLDREGRD------PL 151 (528)
T ss_pred CCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEe-eccccccCC------hH
Confidence 45557789999844332333334678899999999877666678888899998899977655 986544432 12
Q ss_pred chHHHHHHHhCCC
Q 009574 364 GSGSQVVQQFGIP 376 (532)
Q Consensus 364 ~~~~~l~~~~g~~ 376 (532)
+.++++++.+++.
T Consensus 152 ELLdEiE~~L~i~ 164 (528)
T COG4108 152 ELLDEIEEELGIQ 164 (528)
T ss_pred HHHHHHHHHhCcc
Confidence 6788999999864
No 275
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.59 E-value=0.06 Score=53.27 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=37.1
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 220 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~ 220 (532)
.++++|+ |-.|+|||+++.+++...++.|.+|+.|.++....
T Consensus 23 g~~~lI~-G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~ 64 (260)
T COG0467 23 GSVVLIT-GPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPE 64 (260)
T ss_pred CcEEEEE-cCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHH
Confidence 4566766 99999999999999999999999999999997543
No 276
>PTZ00416 elongation factor 2; Provisional
Probab=94.59 E-value=0.12 Score=59.79 Aligned_cols=68 Identities=10% Similarity=0.003 Sum_probs=48.8
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
.+|-+.+||||+...........+..+|.+++|+.+...-......+++.+...+.+.+ +++|+.+..
T Consensus 90 ~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~i-v~iNK~D~~ 157 (836)
T PTZ00416 90 QPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPV-LFINKVDRA 157 (836)
T ss_pred CceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEE-EEEEChhhh
Confidence 35678999999855433333444567899999998877555567788888888888754 677997643
No 277
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=94.59 E-value=0.43 Score=44.55 Aligned_cols=66 Identities=11% Similarity=0.080 Sum_probs=39.8
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 351 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~---~~~~~gvV~N~~~~ 351 (532)
.+.+.|+|+|+..............+|.+++|...+. .++..+...+..+.+. +.+ +-+|.|+.+.
T Consensus 49 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl 118 (191)
T cd04112 49 KVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVV-IMLLGNKADM 118 (191)
T ss_pred EEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEcccc
Confidence 3568899998743222222222345788888877654 4566666666666543 334 5678899775
No 278
>COG1160 Predicted GTPases [General function prediction only]
Probab=94.59 E-value=0.46 Score=49.89 Aligned_cols=69 Identities=16% Similarity=0.198 Sum_probs=41.2
Q ss_pred cCCCCEEEEcCCCCC-Ch---h-----hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 283 WGELDYLVIDMPPGT-GD---I-----QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 283 ~~~yD~VIIDtpp~~-~~---~-----~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
|....+.+|||++-. ++ . ..+..++..+|.+++|+....--...=..+.+.++..+.++ -+|+|+++..
T Consensus 48 ~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpv-iLvvNK~D~~ 125 (444)
T COG1160 48 WLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPV-ILVVNKIDNL 125 (444)
T ss_pred EcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCE-EEEEEcccCc
Confidence 467779999997633 11 1 11233355789999998876522222234556666655664 4666997643
No 279
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=94.56 E-value=0.59 Score=41.77 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=39.3
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~i~~l~~~----~~~~~gvV~N~~~~ 351 (532)
..+.+.|+|+|+...........+..++.++++.... ..++..+......+... +.+ +-+|.|+++.
T Consensus 46 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~ 117 (164)
T cd04139 46 EDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVP-LLLVGNKCDL 117 (164)
T ss_pred EEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEcccc
Confidence 3567899999874332222222344567777765543 34555566655555443 455 5678899764
No 280
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.55 E-value=0.16 Score=47.96 Aligned_cols=102 Identities=16% Similarity=0.208 Sum_probs=63.9
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceee-cccCCcEEEecCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIP-TEYLGVKLVSFGF 257 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~-~~~~~l~vl~~~~ 257 (532)
..+.+- |--|+|||-++..+++.+-.+|++|..+..... ...++ ..++...-.+.+ .-+..+.++|...
T Consensus 29 sL~lIE-Gd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T---~refi------~qm~sl~ydv~~~~l~G~l~~~~~~~ 98 (235)
T COG2874 29 SLILIE-GDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELT---VREFI------KQMESLSYDVSDFLLSGRLLFFPVNL 98 (235)
T ss_pred eEEEEE-CCCCccHHHHHHHHHHHHHhCCceEEEEEechh---HHHHH------HHHHhcCCCchHHHhcceeEEEEecc
Confidence 355555 889999999999999999999999999987642 11111 011111111111 1234566666432
Q ss_pred CCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcC
Q 009574 258 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDM 293 (532)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDt 293 (532)
. ...|........|+.+++..+..++|+||||+
T Consensus 99 ~---~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDS 131 (235)
T COG2874 99 E---PVNWGRRSARKLLDLLLEFIKRWEKDVIIIDS 131 (235)
T ss_pred c---ccccChHHHHHHHHHHHhhHHhhcCCEEEEec
Confidence 2 22344444556777777776667999999998
No 281
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.54 E-value=0.051 Score=52.41 Aligned_cols=39 Identities=28% Similarity=0.283 Sum_probs=32.6
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHH--CCCcEEEEEcCCCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAG--MGARVGIFDADVYG 219 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~--~G~rVllID~D~~~ 219 (532)
+|++. |-.|+||||+|..|+..|.. .+.+|.+|..|-..
T Consensus 1 IigI~-G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIA-GSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEee-CCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 35666 88999999999999999976 56789999988753
No 282
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.51 E-value=0.071 Score=51.52 Aligned_cols=40 Identities=25% Similarity=0.280 Sum_probs=34.2
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
+.++.+. +..|+||||++.+++...++.|.+|+.++++..
T Consensus 20 G~~~~i~-G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 20 GFFVAVT-GEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEES 59 (229)
T ss_pred CeEEEEE-CCCCCChHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 3466666 899999999999999988888999999998653
No 283
>PRK06526 transposase; Provisional
Probab=94.46 E-value=0.028 Score=55.40 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=29.9
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
-+.++ |.+|+|||++|.++|..+.+.|++|+.+.+
T Consensus 100 nlll~-Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 100 NVVFL-GPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred eEEEE-eCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 45555 899999999999999999999999988544
No 284
>COG1159 Era GTPase [General function prediction only]
Probab=94.44 E-value=0.39 Score=47.69 Aligned_cols=111 Identities=19% Similarity=0.176 Sum_probs=71.0
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCCCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 259 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~ 259 (532)
.+++. |+..|||||+--+| .|.|+.++.-=+|-.- .. + .|+. .
T Consensus 8 fVaIi-GrPNvGKSTLlN~l------~G~KisIvS~k~QTTR-~~-----------------I-----~GI~--t----- 50 (298)
T COG1159 8 FVAII-GRPNVGKSTLLNAL------VGQKISIVSPKPQTTR-NR-----------------I-----RGIV--T----- 50 (298)
T ss_pred EEEEE-cCCCCcHHHHHHHH------hcCceEeecCCcchhh-hh-----------------e-----eEEE--E-----
Confidence 57788 99999999996655 5899999876665411 00 0 0110 0
Q ss_pred CcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh--------hhhhhhcCCCeEEEEeCCCcchHHHHHHHH
Q 009574 260 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGV 331 (532)
Q Consensus 260 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~--------~~~~~~~~~d~viiV~~p~~~s~~~~~~~i 331 (532)
.+++.+|+||||+-..... .....+..+|.+++|+..+..--.+-...+
T Consensus 51 -----------------------~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il 107 (298)
T COG1159 51 -----------------------TDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFIL 107 (298)
T ss_pred -----------------------cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHH
Confidence 1678899999987432211 111224467889999888774444556677
Q ss_pred HHHHcCCCCEEEEEEecccc
Q 009574 332 RMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 332 ~~l~~~~~~~~gvV~N~~~~ 351 (532)
+.++..+.+++ +++|+++.
T Consensus 108 ~~lk~~~~pvi-l~iNKID~ 126 (298)
T COG1159 108 EQLKKTKTPVI-LVVNKIDK 126 (298)
T ss_pred HHHhhcCCCeE-EEEEcccc
Confidence 77777666654 56699763
No 285
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=94.43 E-value=0.57 Score=41.98 Aligned_cols=87 Identities=8% Similarity=0.111 Sum_probs=48.3
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc--CCCCEEEEEEecccccCCCccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK--LKVPCIAVVENMCHFDADGKRYYP 360 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~i~~l~~--~~~~~~gvV~N~~~~~~~~~~~~~ 360 (532)
..+++.|+|+|+......+.......+|.+++|...+ ..++..+...+..+.. .+.+ +-+|.|+.+..... .
T Consensus 49 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~----~ 123 (162)
T cd04106 49 EDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIP-MVLVQTKIDLLDQA----V 123 (162)
T ss_pred CEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhccccc----C
Confidence 3567899999874332222222344678877776654 3455666555555543 2456 45888997653321 1
Q ss_pred cCCchHHHHHHHhCC
Q 009574 361 FGRGSGSQVVQQFGI 375 (532)
Q Consensus 361 ~~~~~~~~l~~~~g~ 375 (532)
...+..+.+.+.++.
T Consensus 124 v~~~~~~~~~~~~~~ 138 (162)
T cd04106 124 ITNEEAEALAKRLQL 138 (162)
T ss_pred CCHHHHHHHHHHcCC
Confidence 112334555666664
No 286
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=94.43 E-value=1.2 Score=40.77 Aligned_cols=67 Identities=9% Similarity=0.108 Sum_probs=39.4
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~~ 352 (532)
.+.+.|+|||+......+.......+|.+++|...+ ..++..+....+.+.+ .+.+ +-+|.|+++..
T Consensus 49 ~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilvgNK~Dl~ 120 (172)
T cd04141 49 PALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIP-LVLVGNKVDLE 120 (172)
T ss_pred EEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhhh
Confidence 456788999774333222222244568888876654 4566666655444443 2345 56788997753
No 287
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=94.41 E-value=0.49 Score=42.54 Aligned_cols=67 Identities=10% Similarity=0.109 Sum_probs=40.0
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC--CCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL--KVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~--~~~~~gvV~N~~~~ 351 (532)
..+.+.++|+|+-.....+....+..+|.+++|...+. .++..+...++.+... +.+ +-+|.|+++.
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 119 (164)
T cd04101 50 NTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMP-GVLVGNKMDL 119 (164)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccc
Confidence 34678999997532111112222446788888887754 3455566666666544 334 5677899764
No 288
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.41 E-value=0.088 Score=53.55 Aligned_cols=39 Identities=21% Similarity=0.159 Sum_probs=30.4
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHH------CCCcEEEEEcCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADVY 218 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~------~G~rVllID~D~~ 218 (532)
.++-|+ |..|+|||+++.++|...+. .|.+|+.||+.-.
T Consensus 97 ~iteI~-G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~ 141 (313)
T TIGR02238 97 SITEVF-GEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGT 141 (313)
T ss_pred eEEEEE-CCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCC
Confidence 455555 99999999999999976542 3579999998753
No 289
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=94.37 E-value=0.7 Score=41.34 Aligned_cols=67 Identities=13% Similarity=0.129 Sum_probs=40.9
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~---~~~~~gvV~N~~~~~ 352 (532)
.+.+.++|+|+...........+..+|.+++|..+.. .+...+.+.+..+... +.+ +-+|.|+.+..
T Consensus 48 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~p-ivvv~nK~D~~ 118 (164)
T smart00175 48 RVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVV-IMLVGNKSDLE 118 (164)
T ss_pred EEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhcc
Confidence 3567899998743222222223456788888887765 3666666666555443 344 56788997643
No 290
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.36 E-value=0.057 Score=57.42 Aligned_cols=38 Identities=29% Similarity=0.426 Sum_probs=33.0
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHH-HCCCcEEEEEcCCC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVY 218 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA-~~G~rVllID~D~~ 218 (532)
+.+.++..|+|||+++.|+|..+| +.|++|++++++..
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~ 234 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMS 234 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 445559999999999999999998 67999999998863
No 291
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.27 E-value=0.056 Score=53.77 Aligned_cols=38 Identities=26% Similarity=0.246 Sum_probs=27.9
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
..|.++ |-+|+||||+|..|+..|...|++|.+|+.|.
T Consensus 2 pLiil~-G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~ 39 (270)
T PF08433_consen 2 PLIILC-GLPCSGKTTRAKELKKYLEEKGKEVVIISDDS 39 (270)
T ss_dssp -EEEEE---TTSSHHHHHHHHHHHHHHTT--EEEE-THH
T ss_pred EEEEEE-cCCCCcHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 345555 99999999999999999999999999999654
No 292
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=94.25 E-value=0.37 Score=43.52 Aligned_cols=67 Identities=12% Similarity=0.112 Sum_probs=42.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC--CCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL--KVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~--~~~~~gvV~N~~~~ 351 (532)
..+.+-|+|||+...........+..+|.+++|..++. .+...+...++.+.+. +.+ +-+|.|+.+.
T Consensus 47 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-~ivv~nK~Dl 116 (161)
T cd04124 47 KTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIP-CIVVANKIDL 116 (161)
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEECccC
Confidence 45678899998643322222222456788898888754 4556666666666553 455 4588899764
No 293
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=94.21 E-value=0.92 Score=40.92 Aligned_cols=66 Identities=15% Similarity=0.156 Sum_probs=39.3
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 351 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~---~~~~~gvV~N~~~~ 351 (532)
.+.+-|+|+|+..............+|.+++|...+. .++..+...+..+... +.+ +-+|.|+.+.
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~-~iiv~nK~Dl 119 (166)
T cd01869 50 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDL 119 (166)
T ss_pred EEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEEChhc
Confidence 3567889997743322222222345788888877653 4666666666655543 344 5578899664
No 294
>PRK06217 hypothetical protein; Validated
Probab=94.16 E-value=0.065 Score=49.99 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=25.9
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+.|.|+ |-.|+||||+|..||..| |.. .+|+|-
T Consensus 2 ~~I~i~-G~~GsGKSTla~~L~~~l---~~~--~~~~D~ 34 (183)
T PRK06217 2 MRIHIT-GASGSGTTTLGAALAERL---DIP--HLDTDD 34 (183)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHc---CCc--EEEcCc
Confidence 456777 889999999999999776 443 678875
No 295
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=94.12 E-value=0.41 Score=54.62 Aligned_cols=67 Identities=13% Similarity=0.064 Sum_probs=45.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
+.+.+.|+|||+-.............+|.+++|+..+..........+..+...+++ +-+++|+++.
T Consensus 335 ~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vP-iIVviNKiDl 401 (787)
T PRK05306 335 NGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVP-IIVAINKIDK 401 (787)
T ss_pred CCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCc-EEEEEECccc
Confidence 456789999987433322222334457889999877665455556667777778888 5588899764
No 296
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.11 E-value=0.094 Score=50.53 Aligned_cols=39 Identities=18% Similarity=0.299 Sum_probs=34.3
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+.++.+. +..|+|||+++.+++...+++|.+|+.++++.
T Consensus 16 g~~~li~-G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 16 GHVIVVI-GEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3566666 77999999999999999888999999999986
No 297
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.11 E-value=0.067 Score=50.46 Aligned_cols=37 Identities=32% Similarity=0.446 Sum_probs=30.5
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
+|+++ |-.|+||||++..|+..+ .+.++.++.+|...
T Consensus 1 iigi~-G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIA-GGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYY 37 (198)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHh--CCCCeEEEEecccc
Confidence 35666 789999999999999988 56689999999654
No 298
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=94.09 E-value=0.31 Score=51.81 Aligned_cols=68 Identities=13% Similarity=0.081 Sum_probs=40.3
Q ss_pred CCCCEEEEcCCCCCChh--------hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~--------~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
++..+.|+|||+-.... ......+..+|.+++|+.....-...-....+.+++.+.++ -+|+|+++..
T Consensus 45 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~pi-ilVvNK~D~~ 120 (429)
T TIGR03594 45 GGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPV-ILVANKIDGK 120 (429)
T ss_pred CCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCE-EEEEECccCC
Confidence 45568999997632110 11122244678889998876532223345566677777774 4678997743
No 299
>PRK09183 transposase/IS protein; Provisional
Probab=94.09 E-value=0.077 Score=52.54 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=30.9
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
..+.++ |..|+|||+++..+|..+...|++|+.+++
T Consensus 103 ~~v~l~-Gp~GtGKThLa~al~~~a~~~G~~v~~~~~ 138 (259)
T PRK09183 103 ENIVLL-GPSGVGKTHLAIALGYEAVRAGIKVRFTTA 138 (259)
T ss_pred CeEEEE-eCCCCCHHHHHHHHHHHHHHcCCeEEEEeH
Confidence 355566 889999999999999998899999998873
No 300
>PRK05433 GTP-binding protein LepA; Provisional
Probab=94.07 E-value=0.31 Score=54.18 Aligned_cols=67 Identities=13% Similarity=0.012 Sum_probs=41.3
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
..|.+.|+|||+-..........+..+|.+++|+.....-.......+..+...+.+ +-+|+|+.+.
T Consensus 72 ~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lp-iIvViNKiDl 138 (600)
T PRK05433 72 ETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLE-IIPVLNKIDL 138 (600)
T ss_pred CcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCC
Confidence 467889999987443322222335578999999887653222333334444456777 4578899774
No 301
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.06 E-value=0.092 Score=49.27 Aligned_cols=37 Identities=24% Similarity=0.187 Sum_probs=31.8
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
+++|+|. |--|+||||++..||..|...|++|..+-.
T Consensus 3 g~~Ivie-G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 39 (195)
T TIGR00041 3 GMFIVIE-GIDGAGKTTQANLLKKLLQENGYDVLFTRE 39 (195)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3577777 889999999999999999999999977643
No 302
>PRK05595 replicative DNA helicase; Provisional
Probab=94.04 E-value=0.072 Score=57.09 Aligned_cols=39 Identities=28% Similarity=0.386 Sum_probs=33.1
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHH-HCCCcEEEEEcCCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVY 218 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA-~~G~rVllID~D~~ 218 (532)
-+.+.++..|+|||+++.|+|..+| +.|++|+++.+...
T Consensus 202 ~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms 241 (444)
T PRK05595 202 DMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMS 241 (444)
T ss_pred cEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 3455569999999999999999877 57999999998763
No 303
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=94.03 E-value=0.2 Score=51.30 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=35.9
Q ss_pred eEEEEEeC-cCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 179 NIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 179 kiIav~s~-KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
.||+|-|- -||+|||-++..||..|.++|++|.+|.=...+
T Consensus 36 pVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~ 77 (326)
T PF02606_consen 36 PVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGR 77 (326)
T ss_pred cEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 58888875 799999999999999999999999999865543
No 304
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=94.03 E-value=0.99 Score=40.42 Aligned_cols=67 Identities=18% Similarity=0.167 Sum_probs=40.2
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcCCCC--EEEEEEecccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLKVP--CIAVVENMCHF 351 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~i~~l~~~~~~--~~gvV~N~~~~ 351 (532)
.+.+.|+|+|+...........+..+|.+++|..++ ..++..+...++.+.....+ .+-++.|+.+.
T Consensus 49 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 118 (163)
T cd01860 49 TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADL 118 (163)
T ss_pred EEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 456789999864322222222234578888888775 44566666666666554311 35578899664
No 305
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=93.99 E-value=0.76 Score=41.64 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=40.8
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p-~~~s~~~~~~~i~~l~~~---~~~~~gvV~N~~~~~ 352 (532)
.+.+.|+|+|+...........+..+|.+++|... +..++..+.+.+..+... +.+ +-+|.|+.+..
T Consensus 51 ~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~ 121 (167)
T cd01867 51 KIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVE-RMLVGNKCDME 121 (167)
T ss_pred EEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECcccc
Confidence 35678899987443222222234467888888765 355666666666666543 334 56788997643
No 306
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=93.98 E-value=0.59 Score=42.50 Aligned_cols=66 Identities=12% Similarity=0.152 Sum_probs=40.4
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 009574 286 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 352 (532)
Q Consensus 286 yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~i~~l~~~---~~~~~gvV~N~~~~~ 352 (532)
..+.|+|+|+..............+|.+++|.... ..++..+...+..++.. +.+ +-+|.|+.+..
T Consensus 53 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~ 122 (168)
T cd01866 53 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMT-IMLIGNKCDLE 122 (168)
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccc
Confidence 45789999774322222222244678888888764 45666776666666543 334 56788996643
No 307
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.94 E-value=0.088 Score=49.20 Aligned_cols=35 Identities=26% Similarity=0.274 Sum_probs=30.7
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
+|+|. |--|+||||++..|+..|...|++|..+..
T Consensus 2 ~I~ie-G~~GsGKtT~~~~L~~~l~~~g~~v~~~~~ 36 (200)
T cd01672 2 FIVFE-GIDGAGKTTLIELLAERLEARGYEVVLTRE 36 (200)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 56777 889999999999999999999999977654
No 308
>PRK03003 GTP-binding protein Der; Reviewed
Probab=93.94 E-value=0.39 Score=51.93 Aligned_cols=67 Identities=13% Similarity=0.059 Sum_probs=40.1
Q ss_pred CCCCEEEEcCCCCCChh--------hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~--------~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
+...+.|+|||+-.... ......+..+|.+++|+.........-....+.++..+.++ -+|+|+++.
T Consensus 84 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~pi-ilV~NK~Dl 158 (472)
T PRK03003 84 NGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPV-ILAANKVDD 158 (472)
T ss_pred CCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCE-EEEEECccC
Confidence 45568899997732110 01112244679999998876532222345566666667774 477899774
No 309
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=93.89 E-value=0.78 Score=40.95 Aligned_cols=66 Identities=11% Similarity=0.089 Sum_probs=39.7
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc----CCCCEEEEEEecccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHF 351 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~ 351 (532)
.+++.|+|+|+...........+..+|.+++|..+... ++..+...+..+.. .+.+ +-++.|+++.
T Consensus 42 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~ 112 (158)
T cd00878 42 NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVP-LLIFANKQDL 112 (158)
T ss_pred CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc-EEEEeeccCC
Confidence 56799999987543222222224467889999888765 55555544443322 2344 5677899764
No 310
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=93.89 E-value=0.79 Score=43.74 Aligned_cols=87 Identities=14% Similarity=0.141 Sum_probs=48.4
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC-----CCEEEEEEecccccCCCccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK-----VPCIAVVENMCHFDADGKRY 358 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~~-----~~~~gvV~N~~~~~~~~~~~ 358 (532)
.+.+.|.|+|+......+.......+|.+++|...+. .++..+...++.+.+.. ...+-+|.|+.+.....
T Consensus 49 ~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~--- 125 (215)
T cd04109 49 NVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNR--- 125 (215)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccc---
Confidence 4567899997632211222222446788888887654 36666766666665432 12467889997753211
Q ss_pred cccCCchHHHHHHHhCC
Q 009574 359 YPFGRGSGSQVVQQFGI 375 (532)
Q Consensus 359 ~~~~~~~~~~l~~~~g~ 375 (532)
....+..+.+.+.++.
T Consensus 126 -~v~~~~~~~~~~~~~~ 141 (215)
T cd04109 126 -TVKDDKHARFAQANGM 141 (215)
T ss_pred -ccCHHHHHHHHHHcCC
Confidence 1122344555555553
No 311
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=93.87 E-value=0.58 Score=42.15 Aligned_cols=67 Identities=15% Similarity=0.096 Sum_probs=39.4
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcCCC--CEEEEEEecccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLKV--PCIAVVENMCHF 351 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~i~~l~~~~~--~~~gvV~N~~~~ 351 (532)
.+.+.|+|+|+......+.......++.+++|.... ..+...+.+.+..+.+... ..+-+|.|+.+.
T Consensus 51 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl 120 (165)
T cd01868 51 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDL 120 (165)
T ss_pred EEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 356788999764322222222234567777776654 5566677766666654321 235678899764
No 312
>PRK12377 putative replication protein; Provisional
Probab=93.82 E-value=0.092 Score=51.54 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=31.6
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
-+.++ |..|+|||++|..+|..|.+.|++|+.+.+.
T Consensus 103 ~l~l~-G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~ 138 (248)
T PRK12377 103 NFVFS-GKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP 138 (248)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH
Confidence 45555 8899999999999999999999999998774
No 313
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=93.80 E-value=0.21 Score=55.57 Aligned_cols=65 Identities=14% Similarity=0.095 Sum_probs=45.1
Q ss_pred CEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 287 DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 287 D~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
-+-|||||+--............+|.+++|+..+..-.......+..+...+.+.+-+|+|+++.
T Consensus 52 ~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDl 116 (614)
T PRK10512 52 VLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADR 116 (614)
T ss_pred EEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCcc
Confidence 46899998632222222333456799999988776555566677777888888877799999774
No 314
>PLN02924 thymidylate kinase
Probab=93.79 E-value=0.11 Score=50.03 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=35.2
Q ss_pred cccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 009574 173 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 214 (532)
Q Consensus 173 ~~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID 214 (532)
..+++++.|+|- |--|+||||.+..|+..|...|++|.++.
T Consensus 11 ~~~~~g~~IviE-GiDGsGKsTq~~~L~~~l~~~g~~v~~~~ 51 (220)
T PLN02924 11 SVESRGALIVLE-GLDRSGKSTQCAKLVSFLKGLGVAAELWR 51 (220)
T ss_pred CcCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHhcCCCceeee
Confidence 345667889988 88999999999999999999999986664
No 315
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=93.77 E-value=0.41 Score=50.95 Aligned_cols=70 Identities=14% Similarity=0.112 Sum_probs=43.8
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc--chHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 283 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK--LAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 283 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~--~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
++.+.+.|+|||+-..........+..+|.+++|+.... .-.......+.++...+.+.+-+++|+.+..
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~ 152 (425)
T PRK12317 81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAV 152 (425)
T ss_pred cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccc
Confidence 367889999998732221212222446799999988765 2223344455556666766677899997753
No 316
>PRK08506 replicative DNA helicase; Provisional
Probab=93.75 E-value=0.089 Score=56.74 Aligned_cols=40 Identities=18% Similarity=0.325 Sum_probs=34.6
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
-+.|.++..|+|||+++.|+|..+++.|++|+++.++...
T Consensus 193 ~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~ 232 (472)
T PRK08506 193 DLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPA 232 (472)
T ss_pred ceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCH
Confidence 3455569999999999999999999999999999988743
No 317
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=93.75 E-value=0.15 Score=50.85 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=35.1
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
++|+=|+ |-.|+||||+|.+++......|.+|..||+.-
T Consensus 60 g~ItEiy-G~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~ 98 (279)
T COG0468 60 GRITEIY-GPESSGKTTLALQLVANAQKPGGKAAFIDTEH 98 (279)
T ss_pred ceEEEEe-cCCCcchhhHHHHHHHHhhcCCCeEEEEeCCC
Confidence 4677788 88999999999999999999999999999875
No 318
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.72 E-value=0.12 Score=50.34 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=34.1
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
.++.|. |-.|+|||++|.++++..+++|.+|+.|.++-.
T Consensus 22 s~~lI~-G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~ 60 (237)
T TIGR03877 22 NVVLLS-GGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEH 60 (237)
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCC
Confidence 455555 999999999999999998899999999999863
No 319
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=93.70 E-value=1.1 Score=40.12 Aligned_cols=66 Identities=15% Similarity=0.161 Sum_probs=37.8
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 351 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~i~~l~~~----~~~~~gvV~N~~~~ 351 (532)
.+.+.|+|+|+......+.......++.+++|...+ ..++..+...++.+.+. +.++ -+|.|+++.
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl 118 (163)
T cd04136 48 QCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPM-VLVGNKCDL 118 (163)
T ss_pred EEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccc
Confidence 345678899774322222112234567887776554 44666666665555432 4554 478899764
No 320
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=93.70 E-value=0.09 Score=48.83 Aligned_cols=141 Identities=16% Similarity=0.136 Sum_probs=71.3
Q ss_pred EEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCCCCCc
Q 009574 182 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQG 261 (532)
Q Consensus 182 av~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~~~ 261 (532)
.+.+|==|+||||+-.+|.. ....|.|+.+|-.|...-.. +..+. ...++.+......
T Consensus 3 ~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~i------D~~~l------------~~~~~~v~~l~~g--- 60 (178)
T PF02492_consen 3 IIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEVNI------DAELL------------QEDGVPVVELNNG--- 60 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTHH------HHHHH------------HTTT-EEEEECTT---
T ss_pred EEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEcccccccc------chhhh------------cccceEEEEecCC---
Confidence 34457789999999999988 66789999999888753211 11110 0112223321110
Q ss_pred ccc-cCCchHHHHHHHHHHhcccC--CCCEEEEcCCCCCChhhh-----hhhhhcCCCeEEEEeCCCcch-HHHHH-HHH
Q 009574 262 RAI-MRGPMVSGVINQLLTTTEWG--ELDYLVIDMPPGTGDIQL-----TLCQVVPLTAAVIVTTPQKLA-FIDVA-KGV 331 (532)
Q Consensus 262 ~~~-~~~~~~~~~l~~ll~~~~~~--~yD~VIIDtpp~~~~~~~-----~~~~~~~~d~viiV~~p~~~s-~~~~~-~~i 331 (532)
... .....+...+.++.. +. .+|+|||-+.+......+ ........+.++.|+.+.... ..... .+.
T Consensus 61 cicc~~~~~~~~~l~~l~~---~~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~ 137 (178)
T PF02492_consen 61 CICCTLRDDLVEALRRLLR---EYEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLR 137 (178)
T ss_dssp TESS-TTS-HHHHHHHHCC---CCHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHH
T ss_pred CcccccHHHHHHHHHHHHH---hcCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhh
Confidence 000 011233444555542 24 689999999773333222 011123557888888885531 12221 223
Q ss_pred HHHHcCCCCEEEEEEecccc
Q 009574 332 RMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 332 ~~l~~~~~~~~gvV~N~~~~ 351 (532)
+++... --+|+|+++.
T Consensus 138 ~Qi~~A----DvIvlnK~D~ 153 (178)
T PF02492_consen 138 EQIAFA----DVIVLNKIDL 153 (178)
T ss_dssp HHHCT-----SEEEEE-GGG
T ss_pred hcchhc----CEEEEecccc
Confidence 333333 2588999764
No 321
>PRK00093 GTP-binding protein Der; Reviewed
Probab=93.69 E-value=1.3 Score=47.13 Aligned_cols=67 Identities=12% Similarity=0.029 Sum_probs=41.4
Q ss_pred CCCCEEEEcCCCCCCh------h-----hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGD------I-----QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~------~-----~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
+..++.++|||+.... . ..+...+..+|.+++|+.........-.+.+..+.+.+.++ -+++|+++.
T Consensus 219 ~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~-ivv~NK~Dl 296 (435)
T PRK00093 219 DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRAL-VIVVNKWDL 296 (435)
T ss_pred CCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcE-EEEEECccC
Confidence 4567899999873210 0 01112244678999998877643344445666666667664 478899764
No 322
>COG4240 Predicted kinase [General function prediction only]
Probab=93.65 E-value=0.098 Score=49.81 Aligned_cols=38 Identities=29% Similarity=0.345 Sum_probs=33.4
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCC-CcEEEEEcCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMG-ARVGIFDADV 217 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G-~rVllID~D~ 217 (532)
.|...||-.|+||||+|+.+-..|+++| +||+-+.+|-
T Consensus 51 li~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDD 89 (300)
T COG4240 51 LIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDD 89 (300)
T ss_pred eEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhh
Confidence 5555669999999999999999999988 7999999875
No 323
>PTZ00035 Rad51 protein; Provisional
Probab=93.62 E-value=0.16 Score=52.33 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=30.8
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHH------CCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~------~G~rVllID~D~ 217 (532)
+.++.|+ |..|+||||++..++..... .+.+|+.||...
T Consensus 118 G~iteI~-G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 118 GSITELF-GEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred CeEEEEE-CCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 4566666 89999999999999877652 456999999864
No 324
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=93.61 E-value=4.3 Score=37.51 Aligned_cols=67 Identities=12% Similarity=0.047 Sum_probs=39.1
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHH-Hc---CCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF-SK---LKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l-~~---~~~~~~gvV~N~~~~ 351 (532)
..+.+.|+|+|+..............+|.+++|+..+. .++..+...+..+ .. .+.+ +-+|.|+.+.
T Consensus 59 ~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl 130 (182)
T PTZ00133 59 KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV-LLVFANKQDL 130 (182)
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCC-EEEEEeCCCC
Confidence 45678999998643222222222456788888888753 3455555444433 22 1334 5688899764
No 325
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.61 E-value=0.11 Score=49.92 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=33.2
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
+.+.++ |..|+|||++|..++..+.+.|.+++.++++..
T Consensus 39 ~~lll~-G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 39 RFLYLW-GESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 356666 899999999999999998888899999998653
No 326
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=93.58 E-value=1.3 Score=39.72 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=38.8
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~~ 352 (532)
.+.+.|+|+|+......+.......+|++++|...+ ..++..+.+.+..+.. .+.+ +-+|.|+.+..
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 119 (164)
T cd04175 48 QCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLE 119 (164)
T ss_pred EEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcch
Confidence 456778999764322222222244568888776654 3456666655555532 2455 55888997753
No 327
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=93.55 E-value=2.5 Score=40.08 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=42.6
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~i~~l~~~---~~~~~gvV~N~~~~~ 352 (532)
.+.+.|.||++......+...-...+|++++|...+ ..++..+...++.+++. +.+ +-+|.|+++..
T Consensus 48 ~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~p-iilVgNK~DL~ 118 (202)
T cd04120 48 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCE 118 (202)
T ss_pred EEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccc
Confidence 467889999764332222222244678888887654 46777777767766643 233 57888997753
No 328
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=93.52 E-value=0.27 Score=49.78 Aligned_cols=41 Identities=34% Similarity=0.553 Sum_probs=36.7
Q ss_pred eEEEEEeC-cCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 179 NIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 179 kiIav~s~-KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
.||+|-|. -||.|||-++..||..|.++|.++.++.=...+
T Consensus 48 PVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 48 PVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred CEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 48888765 799999999999999999999999999988755
No 329
>COG2403 Predicted GTPase [General function prediction only]
Probab=93.51 E-value=0.1 Score=52.95 Aligned_cols=38 Identities=34% Similarity=0.468 Sum_probs=35.7
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
..+|+|+...-|+|||+++..+|..|.++|+||++|=.
T Consensus 126 kPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrh 163 (449)
T COG2403 126 KPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRH 163 (449)
T ss_pred CceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEec
Confidence 35999999999999999999999999999999999976
No 330
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=93.50 E-value=1.3 Score=39.54 Aligned_cols=66 Identities=15% Similarity=0.048 Sum_probs=39.6
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc-CC-CCEEEEEEecccc
Q 009574 286 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK-LK-VPCIAVVENMCHF 351 (532)
Q Consensus 286 yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~i~~l~~-~~-~~~~gvV~N~~~~ 351 (532)
+.+.|+|||+...........+..+|.+++|...+.. ++..+...+..+.. .+ -..+-++.|+++.
T Consensus 49 ~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~ 117 (161)
T cd01861 49 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDL 117 (161)
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhc
Confidence 4578999987433322222224467888888777643 56666666665543 22 1236688899775
No 331
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=93.48 E-value=3.7 Score=39.05 Aligned_cols=68 Identities=12% Similarity=0.107 Sum_probs=40.1
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~---~~~~~gvV~N~~~~~ 352 (532)
.+.+.|+|+|+......+.......+|.+++|...+. .++..+...++.+.+. ....+-+|.|+.+..
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~ 122 (211)
T cd04111 51 RIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE 122 (211)
T ss_pred EEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc
Confidence 3567889997743222222222445788888877654 4666776666655432 223456788997643
No 332
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=93.47 E-value=0.72 Score=42.21 Aligned_cols=67 Identities=9% Similarity=-0.071 Sum_probs=41.6
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC---CCEEEEEEecccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK---VPCIAVVENMCHF 351 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~~---~~~~gvV~N~~~~ 351 (532)
.+.+.|.|+|+......+.......+|.+++|...+. .++..+...++.+.+.. ...+-+|.|+.+.
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl 118 (170)
T cd04108 48 PFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDL 118 (170)
T ss_pred EEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhc
Confidence 3567889998643322222333456788988887754 46777777666654322 2246788899775
No 333
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=93.46 E-value=0.98 Score=42.01 Aligned_cols=65 Identities=11% Similarity=0.035 Sum_probs=37.8
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC--CCCEEEEEEecccc
Q 009574 286 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL--KVPCIAVVENMCHF 351 (532)
Q Consensus 286 yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~i~~l~~~--~~~~~gvV~N~~~~ 351 (532)
+.+-|+|+|+..............+|.+++|...+ ..++..+...++.+... +.+ +-+|.|+++.
T Consensus 50 ~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl 117 (193)
T cd04118 50 VTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCK-IYLCGTKSDL 117 (193)
T ss_pred EEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCC-EEEEEEcccc
Confidence 34567788764322212111233578888887764 34565666666666554 344 5688899774
No 334
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=93.44 E-value=0.19 Score=55.71 Aligned_cols=67 Identities=16% Similarity=0.172 Sum_probs=44.9
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
.+.+.|+|+|+.-............+|.+++|+..+..........+..+...+++.+-+++|+++.
T Consensus 49 ~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dl 115 (581)
T TIGR00475 49 DYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADR 115 (581)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCC
Confidence 3678999998632222222333456799999988876444445555667777788867789999764
No 335
>PRK08760 replicative DNA helicase; Provisional
Probab=93.43 E-value=0.096 Score=56.51 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=33.3
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHH-CCCcEEEEEcCCCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYG 219 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~-~G~rVllID~D~~~ 219 (532)
-+.|.++..|+|||+++.|+|...|. .|++|+++.++...
T Consensus 230 ~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~ 270 (476)
T PRK08760 230 DLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSA 270 (476)
T ss_pred ceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCH
Confidence 34445599999999999999999885 59999999988743
No 336
>PRK06749 replicative DNA helicase; Provisional
Probab=93.40 E-value=0.1 Score=55.54 Aligned_cols=39 Identities=28% Similarity=0.484 Sum_probs=34.1
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
+.|.++..|+|||+++.|+|...|+.|++|+++.+....
T Consensus 188 LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs~ 226 (428)
T PRK06749 188 FVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSS 226 (428)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCCH
Confidence 444559999999999999999999999999999888744
No 337
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.39 E-value=0.13 Score=44.72 Aligned_cols=40 Identities=25% Similarity=0.181 Sum_probs=33.1
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
+.+.++ |..|+||||++..++..+...+.++..+++....
T Consensus 20 ~~v~i~-G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~ 59 (151)
T cd00009 20 KNLLLY-GPPGTGKTTLARAIANELFRPGAPFLYLNASDLL 59 (151)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhh
Confidence 355565 9999999999999999998888899988876533
No 338
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.37 E-value=0.1 Score=53.39 Aligned_cols=38 Identities=24% Similarity=0.174 Sum_probs=33.5
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+-+.++ |..|+|||+++..+|..+.++|++|+.+.++-
T Consensus 184 ~~Lll~-G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~ 221 (329)
T PRK06835 184 ENLLFY-GNTGTGKTFLSNCIAKELLDRGKSVIYRTADE 221 (329)
T ss_pred CcEEEE-CCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHH
Confidence 556666 88999999999999999999999999998754
No 339
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.35 E-value=0.18 Score=51.17 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=33.7
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
++++-+.+ ..|+||||++..+...+.+.|..++.||....
T Consensus 53 G~ivEi~G-~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ 92 (322)
T PF00154_consen 53 GRIVEIYG-PESSGKTTLALHAIAEAQKQGGICAFIDAEHA 92 (322)
T ss_dssp TSEEEEEE-STTSSHHHHHHHHHHHHHHTT-EEEEEESSS-
T ss_pred CceEEEeC-CCCCchhhhHHHHHHhhhcccceeEEecCccc
Confidence 67898985 47899999999999999889999999999753
No 340
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=93.34 E-value=1.3 Score=39.68 Aligned_cols=67 Identities=12% Similarity=0.067 Sum_probs=39.7
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~---~~~~~gvV~N~~~~ 351 (532)
..+.+.|+|+|+..............+|.+++|..++. .+...+...+..+... +.+ +-+|.|+.+.
T Consensus 47 ~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~ 117 (161)
T cd04113 47 KRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIV-VILVGNKSDL 117 (161)
T ss_pred EEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhc
Confidence 34678899998743222222222446788888877654 4555666665555432 344 6778899664
No 341
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.31 E-value=0.14 Score=49.51 Aligned_cols=40 Identities=33% Similarity=0.345 Sum_probs=32.5
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEE-EEcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI-FDADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVll-ID~D~~ 218 (532)
..+|++. |..|+||||++-.|+..+...+-.+.+ |.+|..
T Consensus 33 ~~iigi~-G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~ 73 (229)
T PRK09270 33 RTIVGIA-GPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGF 73 (229)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHhhhccCCceEEEecccc
Confidence 3577777 999999999999999999987766666 777653
No 342
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=93.28 E-value=6.3 Score=37.91 Aligned_cols=69 Identities=12% Similarity=0.023 Sum_probs=41.1
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~~--~~~~gvV~N~~~~~ 352 (532)
..|.+.|+|+++......+.......+|.+++|...+. .++..+...+..+.+.. ...+-+|.|+++..
T Consensus 42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~ 113 (220)
T cd04126 42 GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLT 113 (220)
T ss_pred eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 45678999998743332222222446788888877553 46666665554444321 12367889997753
No 343
>PF13173 AAA_14: AAA domain
Probab=93.28 E-value=0.12 Score=45.12 Aligned_cols=39 Identities=26% Similarity=0.260 Sum_probs=31.7
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
+++++. |--||||||++.+++..+. ...+++.+|+|-..
T Consensus 3 ~~~~l~-G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 3 KIIILT-GPRGVGKTTLLKQLAKDLL-PPENILYINFDDPR 41 (128)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHhc-ccccceeeccCCHH
Confidence 466666 7788999999999998877 56789999988644
No 344
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=93.28 E-value=1.3 Score=39.96 Aligned_cols=66 Identities=15% Similarity=0.016 Sum_probs=39.4
Q ss_pred CCEEEEcCCCCCCh-------hhhhhhhhcCCCeEEEEeCCCcc--hHHHHHHHHHHHHcC-----CCCEEEEEEecccc
Q 009574 286 LDYLVIDMPPGTGD-------IQLTLCQVVPLTAAVIVTTPQKL--AFIDVAKGVRMFSKL-----KVPCIAVVENMCHF 351 (532)
Q Consensus 286 yD~VIIDtpp~~~~-------~~~~~~~~~~~d~viiV~~p~~~--s~~~~~~~i~~l~~~-----~~~~~gvV~N~~~~ 351 (532)
..+.++|||+-... .......+..+|.+++|+..... +...+...++.+... +.+ +-+|+|+++.
T Consensus 48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl 126 (170)
T cd01898 48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKP-RIVVLNKIDL 126 (170)
T ss_pred CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccc-cEEEEEchhc
Confidence 36889999873210 01111123347889999887764 566666666666543 344 4578899775
Q ss_pred c
Q 009574 352 D 352 (532)
Q Consensus 352 ~ 352 (532)
.
T Consensus 127 ~ 127 (170)
T cd01898 127 L 127 (170)
T ss_pred C
Confidence 3
No 345
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.27 E-value=0.18 Score=57.03 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=34.2
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
.++.+. |-.|+||||++.+++...++.|.+|+.||+.-..
T Consensus 61 siteI~-G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~ 100 (790)
T PRK09519 61 RVIEIY-GPESSGKTTVALHAVANAQAAGGVAAFIDAEHAL 100 (790)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEECCccch
Confidence 455555 8999999999999999988999999999987643
No 346
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=93.25 E-value=0.84 Score=50.56 Aligned_cols=64 Identities=14% Similarity=0.082 Sum_probs=43.2
Q ss_pred CEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 287 DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 287 D~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
.+.|+|||+..............+|.+++|+..+..........++.+...+++ +-+++|+++.
T Consensus 136 ~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vP-iIVviNKiDl 199 (587)
T TIGR00487 136 MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVP-IIVAINKIDK 199 (587)
T ss_pred EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECccc
Confidence 689999987543322222234467889999877655455555666777777888 5588899764
No 347
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.24 E-value=0.16 Score=50.91 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=33.6
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHC--CCcEEEEEcCCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDADVYG 219 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~--G~rVllID~D~~~ 219 (532)
+.+|+|+ |-.|+||||+|..|+..+.+. +.+|.++..|...
T Consensus 62 p~IIGIa-G~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 62 PYIISIA-GSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 4588887 889999999999999888753 4479999999755
No 348
>PF06155 DUF971: Protein of unknown function (DUF971); InterPro: IPR010376 This domain is found in gamma-butyrobetaine dioxygenase and trimethyllysine dioxygenase proteins.; PDB: 2L6N_A 3LUU_A 2L6P_A 3MS5_A 3O2G_A 3N6W_A.
Probab=93.24 E-value=0.057 Score=44.09 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=22.7
Q ss_pred cCeeEEEEcCCCCcccCChHHHHhc
Q 009574 496 GNYAVSITWPDGFSQIAPYDQLQTM 520 (532)
Q Consensus 496 g~yal~i~w~dgh~~~y~~~~L~~~ 520 (532)
++..|.|.|+|||.+.|++.|||..
T Consensus 8 ~~~~l~i~w~DG~~~~~~~~~LRd~ 32 (89)
T PF06155_consen 8 DERHLEIEWSDGQESRFPYEWLRDN 32 (89)
T ss_dssp CTTEEEEEETTSEEEEEEHHHHHHT
T ss_pred CCCEEEEEECCCCEEEECHHHHhcc
Confidence 3468999999999999999999987
No 349
>PRK08118 topology modulation protein; Reviewed
Probab=93.23 E-value=0.086 Score=48.50 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=20.5
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHH
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTL 203 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~L 203 (532)
|+.|.|+ |-+|+||||+|..|+..+
T Consensus 1 m~rI~I~-G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 1 MKKIILI-GSGGSGKSTLARQLGEKL 25 (167)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 3457777 789999999999998776
No 350
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.22 E-value=0.13 Score=55.21 Aligned_cols=37 Identities=24% Similarity=0.304 Sum_probs=32.5
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+.+.+|..|+||||++.++|..+++.|.+|+.|+.+.
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE 132 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence 3445599999999999999999999999999999874
No 351
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.19 E-value=0.22 Score=53.93 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=32.9
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHC-CCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~-G~rVllID~D~ 217 (532)
.+++.|. |-.|+||||+|.+++..-+++ |.+++.|.++-
T Consensus 21 g~~~Li~-G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE 60 (484)
T TIGR02655 21 GRSTLVS-GTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE 60 (484)
T ss_pred CeEEEEE-cCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 3566666 899999999999999886665 99999999974
No 352
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=93.18 E-value=0.2 Score=46.12 Aligned_cols=29 Identities=45% Similarity=0.512 Sum_probs=22.7
Q ss_pred CCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 188 GGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 188 GGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
-|=||||-|..+|...+-.|+||+++=+=
T Consensus 12 ~GKGKTTAAlGlalRA~G~G~rV~ivQFl 40 (172)
T PF02572_consen 12 DGKGKTTAALGLALRAAGHGMRVLIVQFL 40 (172)
T ss_dssp SSS-HHHHHHHHHHHHHCTT--EEEEESS
T ss_pred CCCCchHHHHHHHHHHHhCCCEEEEEEEe
Confidence 45699999999999999999999998653
No 353
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.14 E-value=0.14 Score=54.87 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=32.4
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+.+..+..|+||||++.++|..++++|.+|+.+++.-
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE 118 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 4444599999999999999999999899999999864
No 354
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=93.13 E-value=0.4 Score=53.83 Aligned_cols=95 Identities=20% Similarity=0.130 Sum_probs=66.8
Q ss_pred cC-CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCcccccc
Q 009574 283 WG-ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPF 361 (532)
Q Consensus 283 ~~-~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~ 361 (532)
|+ +|.+-+||||+-.....-....+..+|++++|+....--...+...+++..+.+++.+ +++|+++--...
T Consensus 72 ~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i-~fiNKmDR~~a~------ 144 (697)
T COG0480 72 WKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRI-LFVNKMDRLGAD------ 144 (697)
T ss_pred EcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeE-EEEECccccccC------
Confidence 56 4899999999966544433444667899999999888777788899999999999966 455996532211
Q ss_pred CCchHHHHHHHhCCCcE-EeccCc
Q 009574 362 GRGSGSQVVQQFGIPHL-FDLPIR 384 (532)
Q Consensus 362 ~~~~~~~l~~~~g~~~l-~~IP~~ 384 (532)
-....+++.+.++.... ..+|..
T Consensus 145 ~~~~~~~l~~~l~~~~~~v~~pIg 168 (697)
T COG0480 145 FYLVVEQLKERLGANPVPVQLPIG 168 (697)
T ss_pred hhhhHHHHHHHhCCCceeeecccc
Confidence 12457788888875433 345544
No 355
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.12 E-value=0.12 Score=49.85 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=31.8
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHC-CCcEEEEEcCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVY 218 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~-G~rVllID~D~~ 218 (532)
.++.+. |-.|+|||+++.+++...+++ |.+|+.|.++..
T Consensus 20 s~~li~-G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~ 59 (226)
T PF06745_consen 20 SVVLIS-GPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEP 59 (226)
T ss_dssp SEEEEE-ESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-
T ss_pred cEEEEE-eCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCC
Confidence 356666 889999999999999999988 999999999864
No 356
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=93.09 E-value=0.14 Score=49.43 Aligned_cols=39 Identities=33% Similarity=0.344 Sum_probs=34.7
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHH-HCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA-~~G~rVllID~D~ 217 (532)
.+-++|. |.-|+|||+++..|...+. +.|.+++++|..-
T Consensus 23 ~~H~~I~-G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~G 62 (229)
T PF01935_consen 23 NRHIAIF-GTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHG 62 (229)
T ss_pred cceEEEE-CCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 3578888 8999999999999999999 8899999999754
No 357
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.05 E-value=0.1 Score=47.68 Aligned_cols=33 Identities=33% Similarity=0.336 Sum_probs=25.4
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+.|.++ |..|+||||+|..||..| |. .++|.|.
T Consensus 5 ~~i~l~-G~~GsGKstla~~La~~l---~~--~~~d~d~ 37 (175)
T PRK00131 5 PNIVLI-GFMGAGKSTIGRLLAKRL---GY--DFIDTDH 37 (175)
T ss_pred CeEEEE-cCCCCCHHHHHHHHHHHh---CC--CEEEChH
Confidence 456665 999999999999999988 43 4557664
No 358
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=93.04 E-value=1.2 Score=40.59 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=40.3
Q ss_pred CCCCEEEEcCCCCCChh-hhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~-~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~----~~~~~gvV~N~~~~ 351 (532)
..+.+-|+|+|+..... .+.......+|.+++|..++. .++..+...++.+... +.+ +-+|.|+.+.
T Consensus 49 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl 121 (170)
T cd04115 49 ERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVP-RILVGNKCDL 121 (170)
T ss_pred eEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 35678899997643221 111112335688888877754 4666666666655543 344 5678899764
No 359
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=93.03 E-value=1.8 Score=38.76 Aligned_cols=68 Identities=9% Similarity=0.043 Sum_probs=40.0
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCC-------CCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLK-------VPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~i~~l~~~~-------~~~~gvV~N~~~~ 351 (532)
..+.+.|+|||+.-............+|.+++|..++.. ++..+...+..+.+.. ...+-+|.|+++.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 122 (168)
T cd04119 47 KEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDL 122 (168)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhc
Confidence 456788999987432222222223457888888877643 5555656555554321 1236778899764
No 360
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=93.02 E-value=0.16 Score=52.32 Aligned_cols=38 Identities=18% Similarity=0.125 Sum_probs=29.6
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHH------CCCcEEEEEcCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 217 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~------~G~rVllID~D~ 217 (532)
.|.-..|-.|+|||+++.+||...+. .+.+|+.||+.-
T Consensus 127 ~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 127 CITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred eEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 44444499999999999999976652 136999999975
No 361
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=93.00 E-value=0.32 Score=56.35 Aligned_cols=67 Identities=12% Similarity=-0.016 Sum_probs=47.9
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
.|-+-+||||+-.........++..+|.+++|+....--...+.++++.+...+.+.+ +++|+.+..
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i-~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEE-EEEECCccc
Confidence 4556799999754443333444667899999998776555567788888888888864 777997643
No 362
>PRK08006 replicative DNA helicase; Provisional
Probab=92.96 E-value=0.14 Score=55.19 Aligned_cols=39 Identities=26% Similarity=0.292 Sum_probs=32.8
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHH-CCCcEEEEEcCCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVY 218 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~-~G~rVllID~D~~ 218 (532)
-+.|..+..|+|||++|.|+|..+|. .|++|+++.+...
T Consensus 225 ~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~ 264 (471)
T PRK08006 225 DLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMP 264 (471)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 34445599999999999999999984 6999999998864
No 363
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=92.92 E-value=1.5 Score=41.33 Aligned_cols=66 Identities=17% Similarity=0.122 Sum_probs=35.9
Q ss_pred CCCEEEEcCCCCCCh---hh-----hhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 009574 285 ELDYLVIDMPPGTGD---IQ-----LTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL---KVPCIAVVENMCHF 351 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~---~~-----~~~~~~~~~d~viiV~~p~~~-s~~~~~~~i~~l~~~---~~~~~gvV~N~~~~ 351 (532)
.+.++|+|||+-... .. ........+|.+++|...... +........+++... +.+ +-+|+|+++.
T Consensus 88 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~-viiV~NK~Dl 165 (204)
T cd01878 88 GREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIP-MILVLNKIDL 165 (204)
T ss_pred CceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCC-EEEEEEcccc
Confidence 347889999763211 00 011113357888888776543 333444444555543 334 6788899764
No 364
>PLN03118 Rab family protein; Provisional
Probab=92.92 E-value=0.72 Score=43.83 Aligned_cols=66 Identities=12% Similarity=0.030 Sum_probs=37.1
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHH-HHHHc----CCCCEEEEEEecccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGV-RMFSK----LKVPCIAVVENMCHF 351 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i-~~l~~----~~~~~~gvV~N~~~~ 351 (532)
.+.+.|+|||+......+....+..+|.+++|...+. .++..+...+ ..+.. .+.+ +-+|.|+.+.
T Consensus 61 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl 132 (211)
T PLN03118 61 RLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCV-KMLVGNKVDR 132 (211)
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 4678999998754332222233446788888877654 3455554432 22221 1233 4577899764
No 365
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=92.89 E-value=3.2 Score=38.43 Aligned_cols=82 Identities=12% Similarity=0.181 Sum_probs=46.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 358 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~~~~~~~~ 358 (532)
+.+.+.++|+|+...........+..+|.+++|+..... ++......+..+.+ .+.+ +-+|.|+.+....
T Consensus 59 ~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~---- 133 (184)
T smart00178 59 GNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVP-FLILGNKIDAPYA---- 133 (184)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCC----
Confidence 456788999986433222222224567888888876543 34444443333321 2444 6688899764321
Q ss_pred cccCCchHHHHHHHhCC
Q 009574 359 YPFGRGSGSQVVQQFGI 375 (532)
Q Consensus 359 ~~~~~~~~~~l~~~~g~ 375 (532)
-..+++.+.++.
T Consensus 134 -----~~~~~i~~~l~l 145 (184)
T smart00178 134 -----ASEDELRYALGL 145 (184)
T ss_pred -----CCHHHHHHHcCC
Confidence 235677777774
No 366
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=92.88 E-value=0.64 Score=51.66 Aligned_cols=84 Identities=11% Similarity=0.043 Sum_probs=47.2
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRG 364 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~ 364 (532)
.|.+.|+|||+...........+..+|.+++|+.............+......+++ +-+|+|+++..... ...
T Consensus 69 ~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ip-iIiViNKiDl~~~~------~~~ 141 (595)
T TIGR01393 69 TYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLE-IIPVINKIDLPSAD------PER 141 (595)
T ss_pred EEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCCccC------HHH
Confidence 47789999987543322223335678999999887653222222233333345676 55788997743211 012
Q ss_pred hHHHHHHHhCC
Q 009574 365 SGSQVVQQFGI 375 (532)
Q Consensus 365 ~~~~l~~~~g~ 375 (532)
..+++.+.++.
T Consensus 142 ~~~el~~~lg~ 152 (595)
T TIGR01393 142 VKKEIEEVIGL 152 (595)
T ss_pred HHHHHHHHhCC
Confidence 34566666664
No 367
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=92.86 E-value=1.7 Score=38.97 Aligned_cols=67 Identities=12% Similarity=0.022 Sum_probs=38.4
Q ss_pred CCCCEEEEcCCCCCChh-----------hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDI-----------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~-----------~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
+..++.++|||+..... .........+|.+++|+.............+..+...+.+ +-+++|+++.
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl 125 (174)
T cd01895 48 DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKA-LVIVVNKWDL 125 (174)
T ss_pred CCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCC-EEEEEecccc
Confidence 34568899998732110 0011123356888888876554333334555666555666 4578899764
No 368
>PRK08939 primosomal protein DnaI; Reviewed
Probab=92.85 E-value=0.15 Score=51.69 Aligned_cols=37 Identities=24% Similarity=0.216 Sum_probs=32.4
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
+-+.++ |..|+|||.++..+|..|+++|++|.++.+.
T Consensus 157 ~gl~L~-G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~ 193 (306)
T PRK08939 157 KGLYLY-GDFGVGKSYLLAAIANELAKKGVSSTLLHFP 193 (306)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence 455556 8899999999999999999999999999774
No 369
>PF05729 NACHT: NACHT domain
Probab=92.84 E-value=0.12 Score=46.62 Aligned_cols=27 Identities=37% Similarity=0.386 Sum_probs=22.9
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMG 207 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G 207 (532)
++.| .|.+|+||||++..++..++..+
T Consensus 2 ~l~I-~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWI-SGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEE-ECCCCCChHHHHHHHHHHHHhcC
Confidence 4444 49999999999999999999865
No 370
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.80 E-value=0.14 Score=48.74 Aligned_cols=38 Identities=29% Similarity=0.404 Sum_probs=29.9
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
+.+|+|+ |..|+||||++..|+..+.. ..+.++..|..
T Consensus 6 g~vi~I~-G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~ 43 (207)
T TIGR00235 6 GIIIGIG-GGSGSGKTTVARKIYEQLGK--LEIVIISQDNY 43 (207)
T ss_pred eEEEEEE-CCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence 4677877 89999999999999987754 45667777664
No 371
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=92.80 E-value=0.15 Score=54.38 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=33.4
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHH-CCCcEEEEEcCCCC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYG 219 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~-~G~rVllID~D~~~ 219 (532)
+.+.++..|+|||+++.++|..+|. .|++|+++.++...
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~ 236 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSA 236 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCH
Confidence 4455599999999999999999886 69999999998743
No 372
>PRK07560 elongation factor EF-2; Reviewed
Probab=92.79 E-value=0.3 Score=55.71 Aligned_cols=67 Identities=13% Similarity=0.005 Sum_probs=45.6
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
+.|-+.+||||+...........+..+|.+++|+.....-.......++...+.+.+. -+++|+.+.
T Consensus 85 ~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~-iv~iNK~D~ 151 (731)
T PRK07560 85 KEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKP-VLFINKVDR 151 (731)
T ss_pred CcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCe-EEEEECchh
Confidence 4677899999975443222333455679999998876554455667777766667776 477899764
No 373
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=92.78 E-value=3.3 Score=37.85 Aligned_cols=67 Identities=10% Similarity=0.046 Sum_probs=37.9
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHH-HcC---CCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMF-SKL---KVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~i~~l-~~~---~~~~~gvV~N~~~~ 351 (532)
+...+.++|+|+...........+..+|.+++|+..+.. ++......+..+ +.. +.+ +-++.|+++.
T Consensus 57 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p-~viv~NK~Dl 128 (174)
T cd04153 57 KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAV-LLVLANKQDL 128 (174)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCC-EEEEEECCCC
Confidence 345689999987432222222224567888888877643 344444433333 221 344 6788899764
No 374
>PRK04328 hypothetical protein; Provisional
Probab=92.76 E-value=0.2 Score=49.28 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=34.3
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
+.++.|. +-.|+|||+++.+++..-+++|.+++.|+++-.
T Consensus 23 gs~ili~-G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 23 RNVVLLS-GGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEH 62 (249)
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCC
Confidence 3466666 889999999999999998888999999999763
No 375
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=92.73 E-value=2.1 Score=45.45 Aligned_cols=67 Identities=13% Similarity=0.038 Sum_probs=40.3
Q ss_pred CCCEEEEcCCCCCChh-----------hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDI-----------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~-----------~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
...+.|+|||+-.... ..+...+..+|.+++|+.........-.+.++.+.+.+.+ +-+|+|+++..
T Consensus 219 ~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~ 296 (429)
T TIGR03594 219 GKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKA-LVIVVNKWDLV 296 (429)
T ss_pred CcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCc-EEEEEECcccC
Confidence 3468999998631110 0011224567999999887654333334566666666766 55788997643
No 376
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=92.70 E-value=0.18 Score=48.58 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=32.2
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
.+.++ |..|+|||+++..++..+.+.|.++..+++..
T Consensus 44 ~~~l~-G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 44 FFYLW-GEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 44555 99999999999999999988899999999865
No 377
>PRK04040 adenylate kinase; Provisional
Probab=92.69 E-value=0.15 Score=47.87 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=25.3
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcE
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARV 210 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rV 210 (532)
+|++|+|+ |-.|+||||++..|+..|. .|.++
T Consensus 1 ~~~~i~v~-G~pG~GKtt~~~~l~~~l~-~~~~~ 32 (188)
T PRK04040 1 MMKVVVVT-GVPGVGKTTVLNKALEKLK-EDYKI 32 (188)
T ss_pred CCeEEEEE-eCCCCCHHHHHHHHHHHhc-cCCeE
Confidence 35677777 8999999999999999885 24444
No 378
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=92.67 E-value=0.21 Score=50.59 Aligned_cols=45 Identities=29% Similarity=0.180 Sum_probs=38.0
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP 223 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~ 223 (532)
++.+.+. |---+||||++.-|-.+..+.|+|.+.+|+|++.++..
T Consensus 103 GPrv~vV-Gp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~sit 147 (415)
T KOG2749|consen 103 GPRVMVV-GPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSIT 147 (415)
T ss_pred CCEEEEE-CCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCCcee
Confidence 4566667 44578999999999999999999999999999987653
No 379
>PLN00223 ADP-ribosylation factor; Provisional
Probab=92.65 E-value=7 Score=36.07 Aligned_cols=83 Identities=8% Similarity=0.101 Sum_probs=45.8
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc-C--CCCEEEEEEecccccCCCcccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK-L--KVPCIAVVENMCHFDADGKRYY 359 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~-~--~~~~~gvV~N~~~~~~~~~~~~ 359 (532)
+.+.+.|+|+|+......+.......+|.+++|...+. .++..+...+..+.. . ....+-+|.|+.+...+
T Consensus 59 ~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~----- 133 (181)
T PLN00223 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----- 133 (181)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC-----
Confidence 45678899997632221121222446788888888754 345555444443321 1 12246788899764321
Q ss_pred ccCCchHHHHHHHhCC
Q 009574 360 PFGRGSGSQVVQQFGI 375 (532)
Q Consensus 360 ~~~~~~~~~l~~~~g~ 375 (532)
...+++.+.++.
T Consensus 134 ----~~~~~~~~~l~l 145 (181)
T PLN00223 134 ----MNAAEITDKLGL 145 (181)
T ss_pred ----CCHHHHHHHhCc
Confidence 135667777764
No 380
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=92.64 E-value=0.68 Score=52.99 Aligned_cols=89 Identities=13% Similarity=0.101 Sum_probs=53.1
Q ss_pred CCCCEEEEcCCCCCChhh----------hh--hhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQ----------LT--LCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~----------~~--~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
+++++.++|+|+..+... .. ......+|.+++|+..+... ........+.+.+.+ .-+++||.+.
T Consensus 48 ~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le--r~l~l~~ql~e~giP-vIvVlNK~Dl 124 (772)
T PRK09554 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE--RNLYLTLQLLELGIP-CIVALNMLDI 124 (772)
T ss_pred CceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcch--hhHHHHHHHHHcCCC-EEEEEEchhh
Confidence 567899999987432110 00 11112578898898876532 223344556677887 4577799775
Q ss_pred cCCCccccccCCchHHHHHHHhCCCcEEe
Q 009574 352 DADGKRYYPFGRGSGSQVVQQFGIPHLFD 380 (532)
Q Consensus 352 ~~~~~~~~~~~~~~~~~l~~~~g~~~l~~ 380 (532)
..+.. . ....+++.+.+|.|++..
T Consensus 125 ~~~~~----i-~id~~~L~~~LG~pVvpi 148 (772)
T PRK09554 125 AEKQN----I-RIDIDALSARLGCPVIPL 148 (772)
T ss_pred hhccC----c-HHHHHHHHHHhCCCEEEE
Confidence 32211 1 134678888999876644
No 381
>PRK08840 replicative DNA helicase; Provisional
Probab=92.57 E-value=0.17 Score=54.44 Aligned_cols=39 Identities=26% Similarity=0.292 Sum_probs=32.9
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHH-CCCcEEEEEcCCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVY 218 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~-~G~rVllID~D~~ 218 (532)
-+.|.++..|+|||+++.|+|..+|. .|++|+++.+...
T Consensus 218 ~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs 257 (464)
T PRK08840 218 DLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMP 257 (464)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCC
Confidence 34445599999999999999999984 6999999998864
No 382
>PRK06904 replicative DNA helicase; Validated
Probab=92.56 E-value=0.16 Score=54.79 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=32.5
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHH-CCCcEEEEEcCCC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVY 218 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~-~G~rVllID~D~~ 218 (532)
+.|.++..|+|||+++.|+|...|. .|++|+++.+...
T Consensus 223 LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs 261 (472)
T PRK06904 223 LIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMP 261 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 4445599999999999999999885 5999999998864
No 383
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=92.55 E-value=6.2 Score=37.41 Aligned_cols=96 Identities=6% Similarity=-0.070 Sum_probs=53.0
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcC----------------------CCC
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL----------------------KVP 340 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p-~~~s~~~~~~~i~~l~~~----------------------~~~ 340 (532)
..+.+-|.|+++......+...-...++.+++|... +..|+..+...++.+... +++
T Consensus 52 ~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~P 131 (202)
T cd04102 52 KTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIP 131 (202)
T ss_pred cEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCce
Confidence 356778899976533322222224457888888664 455777777666655431 244
Q ss_pred EEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEe
Q 009574 341 CIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 380 (532)
Q Consensus 341 ~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~ 380 (532)
+-+|.|+++..................+++++|.+.+..
T Consensus 132 -iilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~ 170 (202)
T cd04102 132 -LLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINL 170 (202)
T ss_pred -EEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEE
Confidence 558999977533211100001112446678888765544
No 384
>PRK05748 replicative DNA helicase; Provisional
Probab=92.55 E-value=0.16 Score=54.54 Aligned_cols=39 Identities=26% Similarity=0.438 Sum_probs=32.9
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHH-CCCcEEEEEcCCCC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYG 219 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~-~G~rVllID~D~~~ 219 (532)
+.+.++..|+|||+++.|+|...|. .|++|+++.+....
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~ 244 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGA 244 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCH
Confidence 4445599999999999999999884 69999999988744
No 385
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=92.51 E-value=0.21 Score=52.38 Aligned_cols=41 Identities=22% Similarity=0.386 Sum_probs=34.2
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
+-+|+|. |-.|+||||++..|...+...|.+|..|..|-.-
T Consensus 212 PlIIGIs-G~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 212 PLVIGFS-APQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 4566666 8899999999999998888778999999888643
No 386
>PRK08727 hypothetical protein; Validated
Probab=92.50 E-value=0.17 Score=49.20 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=31.4
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
.+.++ |..|+|||.++..++..+.+.|++|..+.++
T Consensus 43 ~l~l~-G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 43 WLYLS-GPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 35555 8899999999999999999999999999854
No 387
>PRK06547 hypothetical protein; Provisional
Probab=92.48 E-value=0.15 Score=47.17 Aligned_cols=36 Identities=28% Similarity=0.279 Sum_probs=26.3
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
.+.+|+|. |..|+||||+|..||..+ | +.++++|-.
T Consensus 14 ~~~~i~i~-G~~GsGKTt~a~~l~~~~---~--~~~~~~d~~ 49 (172)
T PRK06547 14 GMITVLID-GRSGSGKTTLAGALAART---G--FQLVHLDDL 49 (172)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHh---C--CCeecccce
Confidence 34577777 899999999999998764 3 445566543
No 388
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=92.42 E-value=1.5 Score=38.78 Aligned_cols=67 Identities=12% Similarity=0.178 Sum_probs=40.0
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~----~~~~~gvV~N~~~~~ 352 (532)
.+.+.++|+|+...........+..+|.+++|...+. .++..+......+... +.+ +-+|.|+++..
T Consensus 46 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~ 117 (160)
T cd00876 46 TYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIP-IVLVGNKCDLE 117 (160)
T ss_pred EEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCccc
Confidence 4678899998854322222222446788888877653 3555555555555432 344 56888997643
No 389
>PF12846 AAA_10: AAA-like domain
Probab=92.40 E-value=0.17 Score=50.51 Aligned_cols=33 Identities=42% Similarity=0.477 Sum_probs=29.7
Q ss_pred EeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 184 SSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 184 ~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
..|+.|+||||++.++...+...|.+++++|..
T Consensus 6 i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~ 38 (304)
T PF12846_consen 6 ILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPK 38 (304)
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 349999999999999999999999999999554
No 390
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=92.39 E-value=2.1 Score=38.93 Aligned_cols=67 Identities=7% Similarity=-0.002 Sum_probs=37.9
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc----CCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~ 351 (532)
+.+.+.++|+|+...........+..+|.+++|...+.. ++......+..+.. .+.+ +-+|.|+++.
T Consensus 56 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl 127 (173)
T cd04154 56 EGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGAT-LLILANKQDL 127 (173)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECccc
Confidence 345688999986432221212224467888888776654 45554444433321 3444 5588899764
No 391
>PRK05642 DNA replication initiation factor; Validated
Probab=92.38 E-value=0.18 Score=49.14 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=31.8
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
.+.++ |..|+|||.++..++..+.++|++|+.++++-
T Consensus 47 ~l~l~-G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~ 83 (234)
T PRK05642 47 LIYLW-GKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE 83 (234)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHH
Confidence 34444 99999999999999999988899999999864
No 392
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=92.31 E-value=2.9 Score=40.09 Aligned_cols=65 Identities=18% Similarity=0.075 Sum_probs=40.0
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhc-CCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVV-PLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~-~~d~viiV~~p~~-~s~~~~~~~i~~l~~~----~~~~~gvV~N~~~~ 351 (532)
..+.+.|+|+|+.. ...... ... .+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++.
T Consensus 48 ~~~~l~i~Dt~G~~-~~~~~~-~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl 118 (221)
T cd04148 48 EESTLVVIDHWEQE-MWTEDS-CMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRP-IILVGNKSDL 118 (221)
T ss_pred EEEEEEEEeCCCcc-hHHHhH-HhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhc
Confidence 35678899997753 111111 122 5788888877654 4666666666666543 344 5688899774
No 393
>PRK06761 hypothetical protein; Provisional
Probab=92.31 E-value=0.17 Score=50.62 Aligned_cols=39 Identities=26% Similarity=0.409 Sum_probs=30.9
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEE-EEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI-FDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVll-ID~D~ 217 (532)
+++|.|. |-.|+||||++..|+..|...|.+|-. .+.|.
T Consensus 3 ~~lIvI~-G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~ 42 (282)
T PRK06761 3 TKLIIIE-GLPGFGKSTTAKMLNDILSQNGIEVELYLEGNL 42 (282)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHhcCcCceEEEEEecCCC
Confidence 3456555 889999999999999999888888765 45554
No 394
>PLN02796 D-glycerate 3-kinase
Probab=92.31 E-value=0.21 Score=51.14 Aligned_cols=40 Identities=25% Similarity=0.507 Sum_probs=33.4
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
+-+|+|. |-.|+||||++..|+..+...|.++..|-.|-.
T Consensus 100 pliIGI~-G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf 139 (347)
T PLN02796 100 PLVIGIS-APQGCGKTTLVFALVYLFNATGRRAASLSIDDF 139 (347)
T ss_pred CEEEEEE-CCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence 3466776 889999999999999999887888888887753
No 395
>PLN03110 Rab GTPase; Provisional
Probab=92.29 E-value=4.9 Score=38.34 Aligned_cols=66 Identities=14% Similarity=0.116 Sum_probs=40.3
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 351 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~i~~l~~~---~~~~~gvV~N~~~~ 351 (532)
.+.+.|+|+|+..............++.+++|.... ..++..+...+..+... +.+ +-+|.|+++.
T Consensus 60 ~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl 129 (216)
T PLN03110 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIV-IMMAGNKSDL 129 (216)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCe-EEEEEEChhc
Confidence 346778899764332222222345678888887764 44666666666666553 343 5677899775
No 396
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=92.28 E-value=2.3 Score=38.52 Aligned_cols=82 Identities=9% Similarity=0.056 Sum_probs=41.1
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHH----cCCCCEEEEEEecccccCCCccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFS----KLKVPCIAVVENMCHFDADGKRY 358 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~----~~~~~~~gvV~N~~~~~~~~~~~ 358 (532)
..+++.++|+|+...........+..++.+++|+.... .++......+..+. ..+.+ +-++.|+++....
T Consensus 56 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~---- 130 (173)
T cd04155 56 DGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVP-VLVFANKQDLATA---- 130 (173)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECCCCccC----
Confidence 35678889987632211111111335677777776543 23444443333322 23455 4456799663221
Q ss_pred cccCCchHHHHHHHhCC
Q 009574 359 YPFGRGSGSQVVQQFGI 375 (532)
Q Consensus 359 ~~~~~~~~~~l~~~~g~ 375 (532)
...+++.+.++.
T Consensus 131 -----~~~~~i~~~l~~ 142 (173)
T cd04155 131 -----APAEEIAEALNL 142 (173)
T ss_pred -----CCHHHHHHHcCC
Confidence 224566666653
No 397
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=92.26 E-value=1.6 Score=39.22 Aligned_cols=67 Identities=18% Similarity=0.179 Sum_probs=35.7
Q ss_pred CCCCEEEEcCCCCCC-----hh---hhhhhhh-cCCCeEEEEeCCCcc---hHHHHHHHHHHHHcC--CCCEEEEEEecc
Q 009574 284 GELDYLVIDMPPGTG-----DI---QLTLCQV-VPLTAAVIVTTPQKL---AFIDVAKGVRMFSKL--KVPCIAVVENMC 349 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~-----~~---~~~~~~~-~~~d~viiV~~p~~~---s~~~~~~~i~~l~~~--~~~~~gvV~N~~ 349 (532)
+.+.+.|+|||+... .. ....... ...|.+++|..+... +.......++.+... +.+ +-+|+|++
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~p-vilv~NK~ 123 (168)
T cd01897 45 KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKP-VIVVLNKI 123 (168)
T ss_pred CceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCC-eEEEEEcc
Confidence 346789999986321 00 0001001 124677777766543 334444555555543 455 45888997
Q ss_pred cc
Q 009574 350 HF 351 (532)
Q Consensus 350 ~~ 351 (532)
+.
T Consensus 124 Dl 125 (168)
T cd01897 124 DL 125 (168)
T ss_pred cc
Confidence 64
No 398
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=92.19 E-value=0.34 Score=49.87 Aligned_cols=39 Identities=13% Similarity=0.001 Sum_probs=29.4
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHH------CCCcEEEEEcCCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADVY 218 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~------~G~rVllID~D~~ 218 (532)
.|....|..|+|||+++.++|...+. .+.+|+.||+.-.
T Consensus 124 ~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~ 168 (342)
T PLN03186 124 SITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGT 168 (342)
T ss_pred eEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCC
Confidence 34444489999999999999976542 2248999999864
No 399
>PRK07933 thymidylate kinase; Validated
Probab=92.18 E-value=0.31 Score=46.72 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=32.3
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
.|+|- |--|+||||++..|+..|...|++|.++..-.
T Consensus 2 ~IviE-G~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~ 38 (213)
T PRK07933 2 LIAIE-GVDGAGKRTLTEALRAALEARGRSVATLAFPR 38 (213)
T ss_pred EEEEE-cCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 56666 77899999999999999999999999987643
No 400
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.14 E-value=0.17 Score=46.38 Aligned_cols=36 Identities=31% Similarity=0.473 Sum_probs=28.1
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
||+.|.++ |-.|+||||++..||..| |. .++|.|..
T Consensus 1 ~~~~i~~~-G~~GsGKst~~~~la~~l---g~--~~~d~D~~ 36 (171)
T PRK03731 1 MTQPLFLV-GARGCGKTTVGMALAQAL---GY--RFVDTDQW 36 (171)
T ss_pred CCCeEEEE-CCCCCCHHHHHHHHHHHh---CC--CEEEccHH
Confidence 45667776 889999999999999877 44 36788863
No 401
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=92.11 E-value=3 Score=37.19 Aligned_cols=68 Identities=10% Similarity=0.062 Sum_probs=39.9
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~----~~~~~gvV~N~~~~~ 352 (532)
..+.+.|+|+|+..............+|.+++|..... .++..+...++.+... +.+ +-+|.|+.+..
T Consensus 47 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~-~~iv~nK~D~~ 119 (161)
T cd01863 47 KKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIV-KMLVGNKIDKE 119 (161)
T ss_pred EEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCc-EEEEEECCccc
Confidence 34678999998743322222222345788888877664 3555555555545432 333 46788997643
No 402
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=92.10 E-value=2.5 Score=38.13 Aligned_cols=68 Identities=10% Similarity=0.093 Sum_probs=38.9
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~i~~l~~~~--~~~~gvV~N~~~~~ 352 (532)
.+.+.|+|+|+..............++.+++|.... ..++..+...++.+.... ...+-+|.|+++..
T Consensus 49 ~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 119 (165)
T cd01865 49 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDME 119 (165)
T ss_pred EEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccC
Confidence 345788899763222222222244567777776643 446666666666665432 22367888997753
No 403
>PRK06321 replicative DNA helicase; Provisional
Probab=92.08 E-value=0.21 Score=53.83 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=32.9
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHH-HCCCcEEEEEcCCCC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYG 219 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA-~~G~rVllID~D~~~ 219 (532)
+.|.++..|+|||+++.|+|..+| +.|++|+++.+....
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~ 267 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTV 267 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence 444559999999999999999998 469999999888743
No 404
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=92.04 E-value=1.7 Score=39.28 Aligned_cols=65 Identities=14% Similarity=0.102 Sum_probs=34.5
Q ss_pred CEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHH-cC------CCCEEEEEEeccccc
Q 009574 287 DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFS-KL------KVPCIAVVENMCHFD 352 (532)
Q Consensus 287 D~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~-~~------~~~~~gvV~N~~~~~ 352 (532)
-+.++|+|+......+....+..+|.++++..... .++..+....+.+. .. +.++ -+|.|+.+..
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~ 122 (172)
T cd01862 50 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPF-VVLGNKIDLE 122 (172)
T ss_pred EEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceE-EEEEECcccc
Confidence 45688997643222222222445788888876643 34444444333322 11 4454 5788997653
No 405
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=92.04 E-value=0.2 Score=47.51 Aligned_cols=34 Identities=41% Similarity=0.468 Sum_probs=26.3
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
||++|+++ |+-|+||||+|--+ ++.|.. +||+|-
T Consensus 1 ~~~iIglT-G~igsGKStva~~~----~~~G~~--vidaD~ 34 (201)
T COG0237 1 MMLIIGLT-GGIGSGKSTVAKIL----AELGFP--VIDADD 34 (201)
T ss_pred CceEEEEe-cCCCCCHHHHHHHH----HHcCCe--EEEccH
Confidence 68899999 99999999987644 445654 567775
No 406
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.03 E-value=0.41 Score=47.92 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=33.1
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
..+|.++ +..|+||||+...|...|... +++.+|+-|...
T Consensus 104 ~~~v~l~-G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~t 143 (290)
T PRK10463 104 QLVLNLV-SSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQT 143 (290)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhccC-CCEEEECCCcCc
Confidence 3578888 789999999999999988765 589999888743
No 407
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=91.99 E-value=0.13 Score=46.39 Aligned_cols=24 Identities=42% Similarity=0.534 Sum_probs=19.8
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHH
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLA 204 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA 204 (532)
+|+| ||+.|+||||+|.-||-.+.
T Consensus 2 ~ItI-sG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITI-SGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEe-ccCCCCChhHHHHHHHHHhC
Confidence 4555 59999999999999988773
No 408
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=91.97 E-value=3.7 Score=38.39 Aligned_cols=86 Identities=10% Similarity=0.115 Sum_probs=49.7
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcC--CCCEEEEEEecccccCCCcccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL--KVPCIAVVENMCHFDADGKRYYPF 361 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p-~~~s~~~~~~~i~~l~~~--~~~~~gvV~N~~~~~~~~~~~~~~ 361 (532)
.+.+-|.|+++......+.......+|.+++|... +..++..+...++.+... +.+ +-+|.|+.+..... ..
T Consensus 54 ~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~p-iilVGNK~DL~~~~----~v 128 (189)
T cd04121 54 RVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVP-KILVGNRLHLAFKR----QV 128 (189)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccchhcc----CC
Confidence 45677889976432222222223467888888765 466888888777777653 333 56788997753211 12
Q ss_pred CCchHHHHHHHhCC
Q 009574 362 GRGSGSQVVQQFGI 375 (532)
Q Consensus 362 ~~~~~~~l~~~~g~ 375 (532)
..+..+.+++..+.
T Consensus 129 ~~~~~~~~a~~~~~ 142 (189)
T cd04121 129 ATEQAQAYAERNGM 142 (189)
T ss_pred CHHHHHHHHHHcCC
Confidence 22345555555553
No 409
>CHL00189 infB translation initiation factor 2; Provisional
Probab=91.93 E-value=0.65 Score=52.57 Aligned_cols=67 Identities=10% Similarity=0.071 Sum_probs=43.8
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
..+.+.++|||+...........+..+|.+++|+..+..........+..+...++++ -+++|+++.
T Consensus 293 ~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPi-IVViNKiDl 359 (742)
T CHL00189 293 ENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPI-IVAINKIDK 359 (742)
T ss_pred CceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceE-EEEEECCCc
Confidence 3577999999864222222222345679999998776544445556667777778884 578899764
No 410
>PRK08181 transposase; Validated
Probab=91.93 E-value=0.2 Score=49.80 Aligned_cols=36 Identities=25% Similarity=0.198 Sum_probs=31.6
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
+-+.++ |..|+|||.++..+|..+.+.|++|+.+.+
T Consensus 107 ~nlll~-Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~ 142 (269)
T PRK08181 107 ANLLLF-GPPGGGKSHLAAAIGLALIENGWRVLFTRT 142 (269)
T ss_pred ceEEEE-ecCCCcHHHHHHHHHHHHHHcCCceeeeeH
Confidence 345555 899999999999999999999999999876
No 411
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=91.90 E-value=2.9 Score=37.03 Aligned_cols=67 Identities=15% Similarity=0.195 Sum_probs=37.5
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~---~~~~~gvV~N~~~~~ 352 (532)
.+.+.++|+|+..............+|.+++|...+. .++..+...++.+... +.+ +-+|.|+.+..
T Consensus 48 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~D~~ 118 (162)
T cd04123 48 RIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNIS-LVIVGNKIDLE 118 (162)
T ss_pred EEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccc
Confidence 3457888987632222222122345788888876544 3555555555555433 233 66778997643
No 412
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.85 E-value=2.6 Score=39.82 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=26.0
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHC-CCcEEEEEc
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDA 215 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~-G~rVllID~ 215 (532)
+|.|+ |..|+||||+...|+..+... +.+++.++-
T Consensus 3 lilI~-GptGSGKTTll~~ll~~~~~~~~~~i~t~e~ 38 (198)
T cd01131 3 LVLVT-GPTGSGKSTTLAAMIDYINKNKTHHILTIED 38 (198)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC
Confidence 45555 899999999999988888754 456665554
No 413
>PLN03108 Rab family protein; Provisional
Probab=91.81 E-value=2.4 Score=40.26 Aligned_cols=112 Identities=13% Similarity=0.176 Sum_probs=56.5
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCcccccc
Q 009574 286 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYPF 361 (532)
Q Consensus 286 yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~i~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~~ 361 (532)
+.+-|+|++.......+.......+|.+++|...... ++..+...+..+... +.+ +-+|.|+.+..... ..
T Consensus 55 i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~----~~ 129 (210)
T PLN03108 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRR----AV 129 (210)
T ss_pred EEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCcccc----CC
Confidence 3466788875332222222224456888888776543 455554444444322 344 45788997653321 11
Q ss_pred CCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEeC--CCCHHHHHHHHHHHHHHHHHH
Q 009574 362 GRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD--PCGEVANTFQDLGVCVVQQCA 422 (532)
Q Consensus 362 ~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~--p~s~~a~~~~~La~~i~~~~~ 422 (532)
..+..+++.+.++.+ +++.. ........|..+++.+.+++.
T Consensus 130 ~~~~~~~~~~~~~~~--------------------~~e~Sa~~~~~v~e~f~~l~~~~~~~~~ 172 (210)
T PLN03108 130 STEEGEQFAKEHGLI--------------------FMEASAKTAQNVEEAFIKTAAKIYKKIQ 172 (210)
T ss_pred CHHHHHHHHHHcCCE--------------------EEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 223344455554432 22221 122355667788877766554
No 414
>PRK07261 topology modulation protein; Provisional
Probab=91.79 E-value=0.19 Score=46.29 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=19.0
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHH
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTL 203 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~L 203 (532)
.|+|+ |-+|+||||+|..|+..+
T Consensus 2 ri~i~-G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAII-GYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEE-cCCCCCHHHHHHHHHHHh
Confidence 46677 889999999999987654
No 415
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=91.74 E-value=3.4 Score=37.17 Aligned_cols=66 Identities=9% Similarity=-0.037 Sum_probs=38.9
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcCC--CCEEEEEEecccc
Q 009574 286 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKLK--VPCIAVVENMCHF 351 (532)
Q Consensus 286 yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p-~~~s~~~~~~~i~~l~~~~--~~~~gvV~N~~~~ 351 (532)
+.+.|.|+++..............+|.+++|... +..++..+...++.+.... ...+-+|.|+.+.
T Consensus 49 ~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl 117 (161)
T cd04117 49 VRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADE 117 (161)
T ss_pred EEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 4567889876332222222223456888887664 4457777777776665432 2245678899764
No 416
>PRK06921 hypothetical protein; Provisional
Probab=91.72 E-value=0.29 Score=48.68 Aligned_cols=37 Identities=27% Similarity=0.279 Sum_probs=32.0
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHC-CCcEEEEEc
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDA 215 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~-G~rVllID~ 215 (532)
..-+.++ |..|+|||+++..+|..+.++ |++|+.+.+
T Consensus 117 ~~~l~l~-G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALL-GQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEE-CCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 3456666 889999999999999999988 999998885
No 417
>PRK09165 replicative DNA helicase; Provisional
Probab=91.71 E-value=0.23 Score=53.98 Aligned_cols=39 Identities=26% Similarity=0.510 Sum_probs=32.3
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHC---------------CCcEEEEEcCCCC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGM---------------GARVGIFDADVYG 219 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~---------------G~rVllID~D~~~ 219 (532)
+.+.++..|+||||+|.|+|...|+. |++|+++.+....
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~ 272 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSA 272 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCH
Confidence 44455999999999999999999863 7899999887744
No 418
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=91.70 E-value=6.5 Score=36.86 Aligned_cols=86 Identities=15% Similarity=0.074 Sum_probs=48.1
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc-------CCCCEEEEEEecccccCCC
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK-------LKVPCIAVVENMCHFDADG 355 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~i~~l~~-------~~~~~~gvV~N~~~~~~~~ 355 (532)
..+.+.|.|+|+......+....+..++++++|...+ ..++..+......+.. .+++ +-+|.|+.+.....
T Consensus 48 ~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~p-iilv~NK~Dl~~~~ 126 (201)
T cd04107 48 TVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIP-CLLLANKCDLKKRL 126 (201)
T ss_pred CEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCc-EEEEEECCCccccc
Confidence 4567889999874332222222245678888887765 4466666655554432 2344 46888997754211
Q ss_pred ccccccCCchHHHHHHHhC
Q 009574 356 KRYYPFGRGSGSQVVQQFG 374 (532)
Q Consensus 356 ~~~~~~~~~~~~~l~~~~g 374 (532)
....+..+++.+..+
T Consensus 127 ----~~~~~~~~~~~~~~~ 141 (201)
T cd04107 127 ----AKDGEQMDQFCKENG 141 (201)
T ss_pred ----ccCHHHHHHHHHHcC
Confidence 112234455555555
No 419
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=91.70 E-value=0.21 Score=48.32 Aligned_cols=31 Identities=29% Similarity=0.319 Sum_probs=27.0
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 213 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllI 213 (532)
+|+|+ |+.||||+...||..|..+|+||++-
T Consensus 1 vi~~v---G~gGKTtl~~~l~~~~~~~g~~v~~T 31 (232)
T TIGR03172 1 VIAFV---GAGGKTSTMFWLAAEYRKEGYRVLVT 31 (232)
T ss_pred CEEEE---cCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 46677 55899999999999999999999884
No 420
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=91.67 E-value=0.19 Score=45.91 Aligned_cols=27 Identities=37% Similarity=0.541 Sum_probs=21.4
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEE
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG 211 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVl 211 (532)
.|+|+ |-+||||||+|-.|+ ..|+++.
T Consensus 2 ~I~IT-GTPGvGKTT~~~~L~----~lg~~~i 28 (180)
T COG1936 2 LIAIT-GTPGVGKTTVCKLLR----ELGYKVI 28 (180)
T ss_pred eEEEe-CCCCCchHHHHHHHH----HhCCcee
Confidence 67888 889999999998877 4466654
No 421
>PRK06893 DNA replication initiation factor; Validated
Probab=91.67 E-value=0.24 Score=48.01 Aligned_cols=36 Identities=8% Similarity=-0.087 Sum_probs=31.8
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
.+.++ |..|+|||+++..+|..+.++|.+|..+.++
T Consensus 41 ~l~l~-G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 41 FFYIW-GGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 44555 9999999999999999999999999999885
No 422
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=91.65 E-value=2.7 Score=37.82 Aligned_cols=65 Identities=14% Similarity=0.051 Sum_probs=36.1
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCEEEEEEecccc
Q 009574 286 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHF 351 (532)
Q Consensus 286 yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~---~~~~~~gvV~N~~~~ 351 (532)
+.+.++|+|+...........+..+|.+++|..... .+...+...+..++. .+.+ .-+|.|+.+.
T Consensus 56 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-~i~v~NK~D~ 124 (169)
T cd04114 56 IKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVI-TILVGNKIDL 124 (169)
T ss_pred EEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccc
Confidence 457788998632222221222445788888877654 344444444444443 2444 3578899774
No 423
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=91.65 E-value=5.3 Score=36.30 Aligned_cols=85 Identities=13% Similarity=0.167 Sum_probs=43.2
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC-CCCEEEEEEecccccCCCccccccCC
Q 009574 286 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-KVPCIAVVENMCHFDADGKRYYPFGR 363 (532)
Q Consensus 286 yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~-~~~~~gvV~N~~~~~~~~~~~~~~~~ 363 (532)
+.+++.|++.......+.......+|.+++|...+. .++..+...++.+... +.+ +-+|.|+++...... ...
T Consensus 54 ~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~----~~~ 128 (169)
T cd01892 54 KYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIP-CLFVAAKADLDEQQQ----RYE 128 (169)
T ss_pred EEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCe-EEEEEEccccccccc----ccc
Confidence 345566766532211111111346788888887644 4555555555544322 344 667889977532111 011
Q ss_pred chHHHHHHHhCC
Q 009574 364 GSGSQVVQQFGI 375 (532)
Q Consensus 364 ~~~~~l~~~~g~ 375 (532)
...+++.+.++.
T Consensus 129 ~~~~~~~~~~~~ 140 (169)
T cd01892 129 VQPDEFCRKLGL 140 (169)
T ss_pred cCHHHHHHHcCC
Confidence 234556666654
No 424
>PRK13947 shikimate kinase; Provisional
Probab=91.65 E-value=0.25 Score=45.18 Aligned_cols=33 Identities=30% Similarity=0.320 Sum_probs=25.8
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+-|.++ |-.|+||||++..||..| |.+ ++|.|.
T Consensus 2 ~~I~l~-G~~GsGKst~a~~La~~l---g~~--~id~d~ 34 (171)
T PRK13947 2 KNIVLI-GFMGTGKTTVGKRVATTL---SFG--FIDTDK 34 (171)
T ss_pred CeEEEE-cCCCCCHHHHHHHHHHHh---CCC--EEECch
Confidence 346666 889999999999999887 544 577776
No 425
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=91.61 E-value=0.17 Score=47.48 Aligned_cols=35 Identities=29% Similarity=0.298 Sum_probs=26.6
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
+|+|. |..|+||||+|..|+..+. .+.+|..|-..
T Consensus 1 ii~i~-G~sgsGKTtla~~l~~~~~----~~~~i~~Ddf~ 35 (187)
T cd02024 1 IVGIS-GVTNSGKTTLAKLLQRILP----NCCVIHQDDFF 35 (187)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHcC----CCeEEcccccc
Confidence 35666 8899999999999988862 46777777543
No 426
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=91.61 E-value=5.7 Score=36.35 Aligned_cols=68 Identities=10% Similarity=0.027 Sum_probs=40.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHH-cC--CCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFS-KL--KVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~-~~--~~~~~gvV~N~~~~ 351 (532)
..+.+.|+|+|+..........-...+|.+++|...+. .++..+...+..+. .. ....+.+|.|+++.
T Consensus 55 ~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl 126 (175)
T smart00177 55 KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDL 126 (175)
T ss_pred CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCc
Confidence 45678999998643332222222456788998888764 35665555554442 21 12246789999764
No 427
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=91.59 E-value=0.47 Score=48.38 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=29.9
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHH---CC---CcEEEEEcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAG---MG---ARVGIFDADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~---~G---~rVllID~D~~ 218 (532)
+.++.++ |..|+||||++.+++...+. .| .+|+.||....
T Consensus 96 g~i~~i~-G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~ 141 (316)
T TIGR02239 96 GSITEIF-GEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGT 141 (316)
T ss_pred CeEEEEE-CCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCC
Confidence 3455555 89999999999999974432 33 58999998753
No 428
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=91.57 E-value=0.18 Score=50.86 Aligned_cols=37 Identities=24% Similarity=0.183 Sum_probs=27.7
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
|+++|.+ .|..|+||||+|..|+..+. ....||.|..
T Consensus 1 m~~liil-~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~ 37 (300)
T PHA02530 1 MMKIILT-VGVPGSGKSTWAREFAAKNP----KAVNVNRDDL 37 (300)
T ss_pred CcEEEEE-EcCCCCCHHHHHHHHHHHCC----CCEEEeccHH
Confidence 3455555 59999999999999988762 4577787764
No 429
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=91.54 E-value=0.15 Score=44.93 Aligned_cols=31 Identities=32% Similarity=0.341 Sum_probs=24.7
Q ss_pred EEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 182 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 182 av~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
.++.|..|+||||++..|+..+. ..+||.|.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~ 32 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG-----AVVISQDE 32 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST-----EEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHH
Confidence 34559999999999998876654 67788887
No 430
>PRK06851 hypothetical protein; Provisional
Probab=91.50 E-value=0.41 Score=49.59 Aligned_cols=43 Identities=21% Similarity=0.296 Sum_probs=35.6
Q ss_pred ccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 174 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 174 ~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+.+..+++.+. |..|+||||+...++..+.++|++|.+.=+-.
T Consensus 210 ~~~~~~~~~i~-G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~ 252 (367)
T PRK06851 210 TEGVKNRYFLK-GRPGTGKSTMLKKIAKAAEERGFDVEVYHCGF 252 (367)
T ss_pred hcccceEEEEe-CCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 34555666666 89999999999999999999999999886543
No 431
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=91.50 E-value=0.25 Score=55.49 Aligned_cols=44 Identities=25% Similarity=0.268 Sum_probs=37.5
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCC
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 220 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~ 220 (532)
.++++|.++ |..|+||||+|..|+..|...|..+.++|.|.-+.
T Consensus 458 ~~~~~i~~~-G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~ 501 (632)
T PRK05506 458 QKPATVWFT-GLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRH 501 (632)
T ss_pred CCcEEEEec-CCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhh
Confidence 345666666 99999999999999999998899999999998654
No 432
>PRK05636 replicative DNA helicase; Provisional
Probab=91.47 E-value=0.26 Score=53.51 Aligned_cols=40 Identities=23% Similarity=0.348 Sum_probs=33.1
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHH-HCCCcEEEEEcCCCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYG 219 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA-~~G~rVllID~D~~~ 219 (532)
-+.+.++..|+|||++|.|+|...| +.|++|+++.+....
T Consensus 266 ~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~ 306 (505)
T PRK05636 266 QMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSK 306 (505)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCH
Confidence 3445559999999999999999888 568999999887743
No 433
>PRK08116 hypothetical protein; Validated
Probab=91.45 E-value=0.29 Score=48.68 Aligned_cols=35 Identities=23% Similarity=0.212 Sum_probs=30.7
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
+.++ |..|+|||.+|..+|..|.++|++|+.+++.
T Consensus 117 l~l~-G~~GtGKThLa~aia~~l~~~~~~v~~~~~~ 151 (268)
T PRK08116 117 LLLW-GSVGTGKTYLAACIANELIEKGVPVIFVNFP 151 (268)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 4455 8899999999999999999889999999853
No 434
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=91.43 E-value=0.3 Score=46.15 Aligned_cols=36 Identities=28% Similarity=0.342 Sum_probs=28.4
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
++..+. |..|+||||+...++..+...|++|+++-.
T Consensus 19 ~~~~l~-G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap 54 (196)
T PF13604_consen 19 RVSVLQ-GPAGTGKTTLLKALAEALEAAGKRVIGLAP 54 (196)
T ss_dssp SEEEEE-ESTTSTHHHHHHHHHHHHHHTT--EEEEES
T ss_pred eEEEEE-ECCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 355554 889999999999999999999999998853
No 435
>PTZ00301 uridine kinase; Provisional
Probab=91.39 E-value=0.37 Score=46.07 Aligned_cols=40 Identities=28% Similarity=0.549 Sum_probs=30.6
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHH-CC-CcEEEEEcCCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAG-MG-ARVGIFDADVYG 219 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~-~G-~rVllID~D~~~ 219 (532)
.+|+|+ |-.|+||||+|..|+..|.. .| ..|.++-.|-+.
T Consensus 4 ~iIgIa-G~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy 45 (210)
T PTZ00301 4 TVIGIS-GASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYY 45 (210)
T ss_pred EEEEEE-CCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence 577877 88999999999999988854 34 346677777654
No 436
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=91.35 E-value=1.5 Score=41.33 Aligned_cols=67 Identities=19% Similarity=0.133 Sum_probs=39.3
Q ss_pred CCCEEEEcCCCCC------Chh--hhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC------CCCEEEEEEecc
Q 009574 285 ELDYLVIDMPPGT------GDI--QLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL------KVPCIAVVENMC 349 (532)
Q Consensus 285 ~yD~VIIDtpp~~------~~~--~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~------~~~~~gvV~N~~ 349 (532)
.+.+.|+|||+.. +.. ......+..+|.+++|...+. .++..+...++.+.+. +.+ +-+|.|++
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~p-iiivgNK~ 126 (198)
T cd04142 48 VYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPP-IVVVGNKR 126 (198)
T ss_pred EEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCC-EEEEEECc
Confidence 4678899997621 110 001122446799999888754 4566666655554432 344 56888997
Q ss_pred ccc
Q 009574 350 HFD 352 (532)
Q Consensus 350 ~~~ 352 (532)
+..
T Consensus 127 Dl~ 129 (198)
T cd04142 127 DQQ 129 (198)
T ss_pred ccc
Confidence 753
No 437
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=91.32 E-value=0.37 Score=47.37 Aligned_cols=41 Identities=27% Similarity=0.264 Sum_probs=34.8
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCc--EEEEEcCCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR--VGIFDADVYG 219 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~r--VllID~D~~~ 219 (532)
.-||+++ |-.||||||+|..|+..|++.+.+ |-+|=+|-..
T Consensus 82 pfIIgia-GsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFh 124 (283)
T COG1072 82 PFIIGIA-GSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFH 124 (283)
T ss_pred CEEEEec-cCccccHHHHHHHHHHHHhhCCCCCceEEEeccccc
Confidence 3578877 889999999999999999998765 8888888654
No 438
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=91.26 E-value=0.25 Score=46.62 Aligned_cols=35 Identities=40% Similarity=0.470 Sum_probs=27.6
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
||++|+++ |.-|+||||++..|+. .|. -+||+|.-
T Consensus 1 ~~~~i~lt-G~~gsGKst~~~~l~~----~g~--~~i~~D~~ 35 (194)
T PRK00081 1 MMLIIGLT-GGIGSGKSTVANLFAE----LGA--PVIDADAI 35 (194)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHH----cCC--EEEEecHH
Confidence 56788888 8899999999987765 465 46888863
No 439
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=91.25 E-value=0.2 Score=47.76 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=25.0
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHH--------HHCCCcEEEEE
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTL--------AGMGARVGIFD 214 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~L--------A~~G~rVllID 214 (532)
+++..|-.|+||||+.+.++..+ ...+++++++-
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~ 60 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVS 60 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEE
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeec
Confidence 67777999999999999999888 34567777664
No 440
>PRK05380 pyrG CTP synthetase; Validated
Probab=91.23 E-value=0.69 Score=49.98 Aligned_cols=49 Identities=24% Similarity=0.295 Sum_probs=40.1
Q ss_pred cceEEEEEeC-cCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCC
Q 009574 177 ISNIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM 225 (532)
Q Consensus 177 ~~kiIav~s~-KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~ 225 (532)
|+|-|.|++| -.|.||=.+|+.++..|..+|++|..+-+||+-+--+..
T Consensus 1 ~~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~Gt 50 (533)
T PRK05380 1 MTKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDPGT 50 (533)
T ss_pred CceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccccccCCCC
Confidence 4567777744 577899999999999999999999999999986554433
No 441
>PRK00698 tmk thymidylate kinase; Validated
Probab=91.10 E-value=0.4 Score=45.19 Aligned_cols=36 Identities=25% Similarity=0.207 Sum_probs=30.0
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 214 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID 214 (532)
+++|+|. |--|+||||++..|+..|...|+.|....
T Consensus 3 ~~~I~ie-G~~gsGKsT~~~~L~~~l~~~~~~~~~~~ 38 (205)
T PRK00698 3 GMFITIE-GIDGAGKSTQIELLKELLEQQGRDVVFTR 38 (205)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCceeEee
Confidence 3677777 88999999999999999998887766543
No 442
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=91.06 E-value=0.29 Score=46.75 Aligned_cols=39 Identities=31% Similarity=0.373 Sum_probs=32.5
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 220 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~ 220 (532)
.+|+|+ |-.|+||||+|..|...|... +|.+|-.|-+-.
T Consensus 9 iiIgIa-G~SgSGKTTva~~l~~~~~~~--~~~~I~~D~YYk 47 (218)
T COG0572 9 IIIGIA-GGSGSGKTTVAKELSEQLGVE--KVVVISLDDYYK 47 (218)
T ss_pred EEEEEe-CCCCCCHHHHHHHHHHHhCcC--cceEeecccccc
Confidence 577777 778999999999999988754 899999987654
No 443
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=90.98 E-value=3.1 Score=37.09 Aligned_cols=67 Identities=15% Similarity=0.124 Sum_probs=38.3
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHH-HHHc---CCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVR-MFSK---LKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~i~-~l~~---~~~~~~gvV~N~~~~ 351 (532)
....+.|+|+|+...........+..+|.+++|+..+.. ++....+.+. .++. .+.+ +-+|.|+.+.
T Consensus 41 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl 112 (158)
T cd04151 41 KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAV-LLVFANKQDM 112 (158)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCc-EEEEEeCCCC
Confidence 345789999987433322222334567888888887654 3333333332 3332 2444 5688899764
No 444
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=90.94 E-value=0.34 Score=53.49 Aligned_cols=40 Identities=35% Similarity=0.400 Sum_probs=34.8
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHH-CCCcEEEEEcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~-~G~rVllID~D~~ 218 (532)
+.+|.++ |-.|+||||+|..||..|.. .|.++.++|.|.-
T Consensus 392 g~~Ivl~-Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 392 GFTVFFT-GLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred CeEEEEE-CCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence 4577666 99999999999999999987 7888999999965
No 445
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=90.90 E-value=0.32 Score=49.41 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=31.2
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHH------CCCcEEEEEcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~------~G~rVllID~D~~ 218 (532)
+.++-|+ |..|+||||++.++|...+. .+.+|+.||+.-.
T Consensus 95 g~i~ei~-G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~ 140 (310)
T TIGR02236 95 QAITEVF-GEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENT 140 (310)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCC
Confidence 3455555 99999999999999988763 2339999999853
No 446
>PRK08084 DNA replication initiation factor; Provisional
Probab=90.87 E-value=0.33 Score=47.29 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=32.4
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
.+.++ |..|+|||+++..+|..+.+.|++|..+.++.
T Consensus 47 ~l~l~-Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 47 YIYLW-SREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 44455 99999999999999999998999999999975
No 447
>PRK07004 replicative DNA helicase; Provisional
Probab=90.85 E-value=0.3 Score=52.56 Aligned_cols=39 Identities=21% Similarity=0.422 Sum_probs=33.0
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHH-CCCcEEEEEcCCCC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYG 219 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~-~G~rVllID~D~~~ 219 (532)
+.|.++..|+|||+++.|+|..+|. .|++|+++.+....
T Consensus 215 liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~ 254 (460)
T PRK07004 215 LIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPG 254 (460)
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCH
Confidence 4445599999999999999999884 69999999888754
No 448
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=90.84 E-value=4.9 Score=36.35 Aligned_cols=67 Identities=6% Similarity=0.024 Sum_probs=40.0
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc--CCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK--LKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~--~~~~~~gvV~N~~~~ 351 (532)
+.+.+.++|+|+..............+|.+++|..... .++..+...+..+.. .+.+ +-+|.|+.+.
T Consensus 42 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~p-iilv~NK~Dl 111 (164)
T cd04162 42 QDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLP-LVVLANKQDL 111 (164)
T ss_pred CCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCc-EEEEEeCcCC
Confidence 45678899997643322222223456788888887654 345555554444432 2455 4588899764
No 449
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=90.74 E-value=0.23 Score=44.34 Aligned_cols=32 Identities=41% Similarity=0.417 Sum_probs=24.8
Q ss_pred EEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 183 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 183 v~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
+..|..|+||||+|..|+..+ | ..++|.|...
T Consensus 3 ~l~G~~GsGKST~a~~l~~~~---~--~~~i~~D~~~ 34 (150)
T cd02021 3 VVMGVSGSGKSTVGKALAERL---G--APFIDGDDLH 34 (150)
T ss_pred EEEcCCCCCHHHHHHHHHhhc---C--CEEEeCcccc
Confidence 455999999999999998874 3 3567887754
No 450
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=90.73 E-value=6.6 Score=34.69 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=35.6
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 009574 286 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 352 (532)
Q Consensus 286 yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~~ 352 (532)
+.+-|+|+|+......+....+..++.+++|...+ ..++..+...+..+.+ .+.+ +-+|.|+++..
T Consensus 49 ~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~ 119 (162)
T cd04138 49 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVP-MVLVGNKCDLA 119 (162)
T ss_pred EEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccc
Confidence 34567899764332222222234567777765544 3455666555544443 2445 45788997643
No 451
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=90.70 E-value=0.39 Score=41.37 Aligned_cols=30 Identities=33% Similarity=0.288 Sum_probs=24.4
Q ss_pred eCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 185 SCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 185 s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
.|..|+||||++..+|..+ |..++-+|+..
T Consensus 4 ~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~ 33 (132)
T PF00004_consen 4 HGPPGTGKTTLARALAQYL---GFPFIEIDGSE 33 (132)
T ss_dssp ESSTTSSHHHHHHHHHHHT---TSEEEEEETTH
T ss_pred ECcCCCCeeHHHHHHHhhc---ccccccccccc
Confidence 4889999999999999987 56676666654
No 452
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=90.66 E-value=0.27 Score=42.50 Aligned_cols=39 Identities=26% Similarity=0.193 Sum_probs=29.7
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHC-----CCcEEEEEcCCCC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGM-----GARVGIFDADVYG 219 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~-----G~rVllID~D~~~ 219 (532)
+.+..|..|+|||+++.+++..+... ..+|+.+++....
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC
Confidence 34445999999999999999999864 5778888877654
No 453
>PRK13946 shikimate kinase; Provisional
Probab=90.52 E-value=0.3 Score=45.53 Aligned_cols=34 Identities=41% Similarity=0.463 Sum_probs=26.8
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
.+.|.++ |-.|+||||++..||..| |.+ .+|.|.
T Consensus 10 ~~~I~l~-G~~GsGKsti~~~LA~~L---g~~--~id~D~ 43 (184)
T PRK13946 10 KRTVVLV-GLMGAGKSTVGRRLATML---GLP--FLDADT 43 (184)
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHc---CCC--eECcCH
Confidence 3467766 889999999999999888 544 678874
No 454
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=90.51 E-value=1.9 Score=49.10 Aligned_cols=67 Identities=21% Similarity=0.128 Sum_probs=39.4
Q ss_pred CCCCEEEEcCCCCCCh---h-----hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGD---I-----QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~---~-----~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
+.+.+.++|||+.... . ......+..+|.+++|+.....-...-....+.++..+.++ -+|+|+++.
T Consensus 321 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pv-IlV~NK~D~ 395 (712)
T PRK09518 321 AGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPV-VLAVNKIDD 395 (712)
T ss_pred CCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCE-EEEEECccc
Confidence 5567889999873311 0 01112244679999998875421122234566677777775 467799764
No 455
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=90.42 E-value=0.17 Score=50.06 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=33.0
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHH------CCCcEEEEEcCCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADVYG 219 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~------~G~rVllID~D~~~ 219 (532)
+.++=|+ |-.|+|||.++.+||..... .+.+|+.||++-..
T Consensus 38 g~itEi~-G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f 84 (256)
T PF08423_consen 38 GSITEIV-GESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTF 84 (256)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS
T ss_pred CcEEEEE-EecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCC
Confidence 4577777 88999999999999977642 35799999998754
No 456
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=90.40 E-value=0.26 Score=42.34 Aligned_cols=20 Identities=45% Similarity=0.439 Sum_probs=18.2
Q ss_pred EeCcCCCcHHHHHHHHHHHH
Q 009574 184 SSCKGGVGKSTVAVNLAYTL 203 (532)
Q Consensus 184 ~s~KGGvGKTTlA~nLA~~L 203 (532)
.+|..|+||||+|..|+..+
T Consensus 3 i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 3 ISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999998
No 457
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=90.35 E-value=0.46 Score=43.70 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=25.0
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 213 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~G~rVllI 213 (532)
|.++ |+.|+||||+...+...|...|.+|.-+
T Consensus 2 i~iT-G~pG~GKTTll~k~i~~l~~~~~~v~Gf 33 (168)
T PF03266_consen 2 IFIT-GPPGVGKTTLLKKVIEELKKKGLPVGGF 33 (168)
T ss_dssp EEEE-S-TTSSHHHHHHHHHHHHHHTCGGEEEE
T ss_pred EEEE-CcCCCCHHHHHHHHHHHhhccCCccceE
Confidence 3444 9999999999999999998877776543
No 458
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=90.32 E-value=0.34 Score=50.24 Aligned_cols=38 Identities=29% Similarity=0.357 Sum_probs=30.6
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHH--HHCCCcEEEEEcCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTL--AGMGARVGIFDADV 217 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~L--A~~G~rVllID~D~ 217 (532)
.+.|++|-.|+|||.+|.+||..| ...+.+++++-...
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~ 41 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNH 41 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecc
Confidence 456666999999999999999999 66777777665543
No 459
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=90.25 E-value=3.5 Score=38.34 Aligned_cols=65 Identities=18% Similarity=0.167 Sum_probs=37.4
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC------CCCEEEEEEecccc
Q 009574 286 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL------KVPCIAVVENMCHF 351 (532)
Q Consensus 286 yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~i~~l~~~------~~~~~gvV~N~~~~ 351 (532)
+.+-|+|+|+...........+..+|.+++|...+ ..++..+...++.+... +.+ +-+|.|+++.
T Consensus 47 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilvgNK~Dl 118 (190)
T cd04144 47 CMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVP-IMIVGNKCDK 118 (190)
T ss_pred EEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCC-EEEEEEChhc
Confidence 45778899764322222222244568888776643 34566666666555432 344 4578899765
No 460
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=90.22 E-value=5.1 Score=41.08 Aligned_cols=65 Identities=15% Similarity=0.074 Sum_probs=37.6
Q ss_pred CCEEEEcCCCCCC-------hhhhhhhhhcCCCeEEEEeCCCcc----hHHHHHHHHHHHHcC-----CCCEEEEEEecc
Q 009574 286 LDYLVIDMPPGTG-------DIQLTLCQVVPLTAAVIVTTPQKL----AFIDVAKGVRMFSKL-----KVPCIAVVENMC 349 (532)
Q Consensus 286 yD~VIIDtpp~~~-------~~~~~~~~~~~~d~viiV~~p~~~----s~~~~~~~i~~l~~~-----~~~~~gvV~N~~ 349 (532)
+.++|+|+|.-.. ........+..++.+++|+..+.. ++.......+.+... +.+ .-+|+|++
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp-~IIV~NK~ 283 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKP-RIVVLNKI 283 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCC-EEEEEeCc
Confidence 5689999986321 111112223457888888877653 445555555544432 344 45888997
Q ss_pred cc
Q 009574 350 HF 351 (532)
Q Consensus 350 ~~ 351 (532)
+.
T Consensus 284 DL 285 (329)
T TIGR02729 284 DL 285 (329)
T ss_pred cC
Confidence 75
No 461
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=90.20 E-value=0.38 Score=47.10 Aligned_cols=35 Identities=26% Similarity=0.256 Sum_probs=26.5
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
|.+|+++ |.-|+||||++.-|+.. .|.. +||+|.-
T Consensus 1 M~iIGlT-GgIgSGKStVs~~L~~~---~G~~--viDaD~i 35 (244)
T PTZ00451 1 MILIGLT-GGIACGKSTVSRILREE---HHIE--VIDADLV 35 (244)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHH---cCCe--EEehHHH
Confidence 4689999 88999999998766543 3665 4899974
No 462
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=90.19 E-value=4.1 Score=36.74 Aligned_cols=68 Identities=10% Similarity=0.021 Sum_probs=37.5
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc-------CCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK-------LKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~i~~l~~-------~~~~~~gvV~N~~~~~ 352 (532)
..+.+.|+|+|+......+.......+|.++++...+ ..++..+...+..+.. .+.+ +-+|.|+.+..
T Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 127 (170)
T cd04116 52 HFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVVLGNKNDIP 127 (170)
T ss_pred eEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCc-EEEEEECcccc
Confidence 3456788999764322222222234567877776554 4456666555544432 1234 45788997753
No 463
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=90.14 E-value=0.6 Score=48.73 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=33.7
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
+.+|.|+ |..|+||||++..|...|..+ ++|.+|.-+..
T Consensus 5 ~~~i~i~-G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~~~~ 43 (369)
T PRK14490 5 PFEIAFC-GYSGSGKTTLITALVRRLSER-FSVGYYKHGCH 43 (369)
T ss_pred CEEEEEE-eCCCCCHHHHHHHHHHHHhhC-ceEEEEEeCCC
Confidence 3588888 778999999999999999999 99999976543
No 464
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=90.04 E-value=5.1 Score=36.15 Aligned_cols=65 Identities=11% Similarity=0.103 Sum_probs=35.0
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHc----CCCCEEEEEEecccc
Q 009574 286 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSK----LKVPCIAVVENMCHF 351 (532)
Q Consensus 286 yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p-~~~s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~ 351 (532)
+.+-|+|+|+......+.......++.+++|... +..++.......+.+.+ .+.+++ ++.|+.+.
T Consensus 49 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~pii-iv~nK~D~ 118 (168)
T cd04177 49 CDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMV-LVGNKADL 118 (168)
T ss_pred EEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEE-EEEEChhc
Confidence 4577889976332222222223345666666544 44466666555444432 356654 67899654
No 465
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=90.01 E-value=4.3 Score=36.06 Aligned_cols=66 Identities=17% Similarity=0.171 Sum_probs=36.8
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHF 351 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~ 351 (532)
.+.+.++|+|+...........+..+|.+++|..... .++..+...+..+.+ .+.+ +-+|.|+++.
T Consensus 43 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 113 (160)
T cd04156 43 HLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVP-VVLLANKQDL 113 (160)
T ss_pred ceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCC-EEEEEECccc
Confidence 4568899997643222211222445788888877644 344555444443322 2444 6788899764
No 466
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=89.89 E-value=3.1 Score=37.37 Aligned_cols=66 Identities=12% Similarity=0.222 Sum_probs=38.7
Q ss_pred CCCEEEEcCCCCCC-hhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC-----CCCEEEEEEecccc
Q 009574 285 ELDYLVIDMPPGTG-DIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-----KVPCIAVVENMCHF 351 (532)
Q Consensus 285 ~yD~VIIDtpp~~~-~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~-----~~~~~gvV~N~~~~ 351 (532)
.+.+-|+|+|+... ........+..+|.++++...+. .++..+...+..+... +.+ +-+|.|+.+.
T Consensus 46 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 118 (165)
T cd04146 46 QVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIP-VILVGNKADL 118 (165)
T ss_pred EEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCch
Confidence 34577899987431 11111222445788888877654 4666666655555542 444 5677798764
No 467
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=89.87 E-value=2.2 Score=38.72 Aligned_cols=68 Identities=13% Similarity=0.079 Sum_probs=39.7
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~-~~i~~l~~~--~~~~~gvV~N~~~~~ 352 (532)
..+.+.|+|||+......+.......+|.+++|...+. .++..+. ..+..+.+. +.+ +-+|.|+++..
T Consensus 44 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~ 115 (174)
T smart00174 44 KPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTP-IILVGTKLDLR 115 (174)
T ss_pred EEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEecChhhh
Confidence 45678999998753322222222345788888877643 4566554 344555432 444 56788997643
No 468
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=89.85 E-value=0.45 Score=44.94 Aligned_cols=34 Identities=35% Similarity=0.460 Sum_probs=25.9
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
++|+++ |.-|+||||++..|+..+ |..| +|+|--
T Consensus 2 ~~i~it-G~~gsGKst~~~~l~~~~---g~~~--i~~D~~ 35 (195)
T PRK14730 2 RRIGLT-GGIASGKSTVGNYLAQQK---GIPI--LDADIY 35 (195)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHhh---CCeE--eeCcHH
Confidence 478888 889999999998877543 6544 588863
No 469
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=89.81 E-value=8.2 Score=39.46 Aligned_cols=143 Identities=16% Similarity=0.085 Sum_probs=73.1
Q ss_pred EEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCCCCCc
Q 009574 182 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQG 261 (532)
Q Consensus 182 av~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~~~~ 261 (532)
.|.+|==|+||||+-.+|..... |+|+.+|=-+..--+.+. . .......+++.=++.|
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~--g~kiAVIVNEfGEvgID~--------------~-~~l~~~~e~~~El~nG----- 61 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRD--GKKIAVIVNEFGEVGIDG--------------G-ALLSDTGEEVVELTNG----- 61 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccC--CCcEEEEEecCccccccC--------------C-CccccCCccEEEeCCc-----
Confidence 34446668999999888866655 899999877764322221 0 0011111111111111
Q ss_pred cccc-CCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhh--h------hhhhcCCCeEEEEeCCCcchHHH---HHH
Q 009574 262 RAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL--T------LCQVVPLTAAVIVTTPQKLAFID---VAK 329 (532)
Q Consensus 262 ~~~~-~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~--~------~~~~~~~d~viiV~~p~~~s~~~---~~~ 329 (532)
..+. -.......+.++.. . ++.+|+|||-+.+-...... + .......|.++-|+.+....-.- ...
T Consensus 62 CICCT~r~dl~~~~~~L~~-~-~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~ 139 (323)
T COG0523 62 CICCTVRDDLLPALERLLR-R-RDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAEL 139 (323)
T ss_pred eEEEeccchhHHHHHHHHh-c-cCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHH
Confidence 1110 11233455666665 3 36799999999763332111 1 11223456777788776543221 122
Q ss_pred HHHHHHcCCCCEEEEEEeccccc
Q 009574 330 GVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 330 ~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
+.+++... --+|+|+++.-
T Consensus 140 ~~~Qia~A----D~ivlNK~Dlv 158 (323)
T COG0523 140 AEDQLAFA----DVIVLNKTDLV 158 (323)
T ss_pred HHHHHHhC----cEEEEecccCC
Confidence 23333333 35899997643
No 470
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=89.79 E-value=0.36 Score=48.11 Aligned_cols=42 Identities=26% Similarity=0.201 Sum_probs=30.2
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHC-CC-cEEEEEcCCCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GA-RVGIFDADVYG 219 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~-G~-rVllID~D~~~ 219 (532)
..++|+++ |-||+||||+|.+++...... .+ .|.-+++....
T Consensus 18 ~~~~v~I~-G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~ 61 (287)
T PF00931_consen 18 EVRVVAIV-GMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNP 61 (287)
T ss_dssp SSEEEEEE-ESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-S
T ss_pred CeEEEEEE-cCCcCCcceeeeeccccccccccccccccccccccc
Confidence 35688888 899999999999999775532 23 46667776543
No 471
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=89.76 E-value=0.48 Score=44.89 Aligned_cols=33 Identities=39% Similarity=0.307 Sum_probs=26.3
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
|++|+++ |.-|+||||++..|+. .|.. +||+|-
T Consensus 1 m~~igit-G~igsGKst~~~~l~~----~g~~--vid~D~ 33 (200)
T PRK14734 1 MLRIGLT-GGIGSGKSTVADLLSS----EGFL--IVDADQ 33 (200)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHH----CCCe--EEeCcH
Confidence 4688888 8899999999998873 5764 688884
No 472
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=89.74 E-value=1.3 Score=40.23 Aligned_cols=91 Identities=13% Similarity=0.087 Sum_probs=53.3
Q ss_pred CCCCEEEEcCCCCCCh------hh--hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCC
Q 009574 284 GELDYLVIDMPPGTGD------IQ--LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADG 355 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~------~~--~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~ 355 (532)
+...+.+||+|+-.+. .. .........|.++.|+.+... ..-..+...+.+.+.| +-+++||++.-.+.
T Consensus 45 ~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P-~vvvlN~~D~a~~~ 121 (156)
T PF02421_consen 45 GDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL--ERNLYLTLQLLELGIP-VVVVLNKMDEAERK 121 (156)
T ss_dssp TTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSS-EEEEEETHHHHHHT
T ss_pred cCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH--HHHHHHHHHHHHcCCC-EEEEEeCHHHHHHc
Confidence 4678999999983321 11 111112367899999998764 3334566677788988 45778997644322
Q ss_pred ccccccCCchHHHHHHHhCCCcEEecc
Q 009574 356 KRYYPFGRGSGSQVVQQFGIPHLFDLP 382 (532)
Q Consensus 356 ~~~~~~~~~~~~~l~~~~g~~~l~~IP 382 (532)
... -..+.+.+.+|.|++....
T Consensus 122 g~~-----id~~~Ls~~Lg~pvi~~sa 143 (156)
T PF02421_consen 122 GIE-----IDAEKLSERLGVPVIPVSA 143 (156)
T ss_dssp TEE-----E-HHHHHHHHTS-EEEEBT
T ss_pred CCE-----ECHHHHHHHhCCCEEEEEe
Confidence 111 2478889999988666543
No 473
>PLN02422 dephospho-CoA kinase
Probab=89.71 E-value=0.44 Score=46.22 Aligned_cols=34 Identities=29% Similarity=0.321 Sum_probs=26.8
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
|++|+++ |.-|+||||++..|+ +.|.. ++|+|--
T Consensus 1 M~~iglt-G~igsGKstv~~~l~----~~g~~--~idaD~~ 34 (232)
T PLN02422 1 MRVVGLT-GGIASGKSTVSNLFK----SSGIP--VVDADKV 34 (232)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHH----HCCCe--EEehhHH
Confidence 4678888 889999999998887 35765 5899863
No 474
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=89.70 E-value=5.1 Score=36.00 Aligned_cols=67 Identities=9% Similarity=0.044 Sum_probs=38.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHH-Hc---CCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF-SK---LKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l-~~---~~~~~~gvV~N~~~~ 351 (532)
+.+.+.|.|+|+..............+|.+++|...+. .++..+...+..+ .. .+.+ +-++.|+.+.
T Consensus 42 ~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl 113 (159)
T cd04150 42 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAV-LLVFANKQDL 113 (159)
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCC-EEEEEECCCC
Confidence 34568899997632211121222456788999888754 3455555544433 22 1244 5688999764
No 475
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=89.68 E-value=0.44 Score=48.59 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=31.2
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHC------CCcEEEEEcCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADVY 218 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~------G~rVllID~D~~ 218 (532)
.++-|+ |..|+|||+++.++|...+.. +.+|+.||++-.
T Consensus 103 ~vtei~-G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~ 147 (317)
T PRK04301 103 SITEFY-GEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGT 147 (317)
T ss_pred cEEEEE-CCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCC
Confidence 455555 899999999999999887642 359999999863
No 476
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=89.65 E-value=0.9 Score=46.19 Aligned_cols=102 Identities=12% Similarity=0.111 Sum_probs=65.2
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCC
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 363 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 363 (532)
.+-+|||.|||+-.....-.+.....||.+++++..-.--+..++|---....+|++.+-+-+|+.+.-.-.+..+..-.
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~ 163 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIV 163 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHHH
Confidence 45689999998732211111222345688899999877777788887777778899999999999765431111111111
Q ss_pred chHHHHHHHhCCCcEEeccCch
Q 009574 364 GSGSQVVQQFGIPHLFDLPIRP 385 (532)
Q Consensus 364 ~~~~~l~~~~g~~~l~~IP~~~ 385 (532)
.....+++.+|......||.+.
T Consensus 164 ~dy~~fa~~L~~~~~~~IPiSA 185 (431)
T COG2895 164 ADYLAFAAQLGLKDVRFIPISA 185 (431)
T ss_pred HHHHHHHHHcCCCcceEEechh
Confidence 2234455666877778888765
No 477
>PRK13973 thymidylate kinase; Provisional
Probab=89.61 E-value=0.63 Score=44.52 Aligned_cols=36 Identities=28% Similarity=0.243 Sum_probs=31.2
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 214 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID 214 (532)
++.|+|- |--|+||||.+-.|+..|...|++|....
T Consensus 3 g~~IviE-G~dGsGKtTq~~~l~~~l~~~g~~~~~~~ 38 (213)
T PRK13973 3 GRFITFE-GGEGAGKSTQIRLLAERLRAAGYDVLVTR 38 (213)
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3677876 88899999999999999999999997664
No 478
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=89.51 E-value=0.58 Score=47.04 Aligned_cols=37 Identities=35% Similarity=0.475 Sum_probs=27.4
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
+.+|. .+|-.|+||||+|..||..| |..+ +|..|.-.
T Consensus 92 p~iIl-I~G~sgsGKStlA~~La~~l---~~~~-vi~~D~~r 128 (301)
T PRK04220 92 PIIIL-IGGASGVGTSTIAFELASRL---GIRS-VIGTDSIR 128 (301)
T ss_pred CEEEE-EECCCCCCHHHHHHHHHHHh---CCCE-EEechHHH
Confidence 34555 45999999999999999888 5553 56677644
No 479
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=89.36 E-value=17 Score=33.36 Aligned_cols=67 Identities=12% Similarity=0.091 Sum_probs=37.3
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHH----cCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFS----KLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~i~~l~----~~~~~~~gvV~N~~~~ 351 (532)
....+.++|+|+-..........+..+|.+++|+..+.. ++..+...+..+. ..+.+ +-+|+|+.+.
T Consensus 50 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~ 121 (183)
T cd04152 50 KGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVP-VLVLANKQDL 121 (183)
T ss_pred CceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCc-EEEEEECcCc
Confidence 456788999976322111111223457888888887554 4444444333332 23455 5678899764
No 480
>PLN02348 phosphoribulokinase
Probab=89.34 E-value=0.74 Score=47.97 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=33.5
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCC---------------CcEEEEEcCCCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMG---------------ARVGIFDADVYG 219 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G---------------~rVllID~D~~~ 219 (532)
...+|+|+ |-.|+||||+|..|+..|...+ ..+.+|-+|-+.
T Consensus 48 ~p~IIGIa-G~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh 104 (395)
T PLN02348 48 GTVVIGLA-ADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYH 104 (395)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEccccc
Confidence 34577777 8899999999999999997542 467888888654
No 481
>PRK13975 thymidylate kinase; Provisional
Probab=89.26 E-value=0.42 Score=44.77 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=23.0
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHH
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLA 204 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA 204 (532)
|++.|+|. |--|+||||++..||..|.
T Consensus 1 m~~~I~ie-G~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 1 MNKFIVFE-GIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHhC
Confidence 45677777 8899999999999999884
No 482
>PRK03839 putative kinase; Provisional
Probab=89.26 E-value=0.42 Score=44.23 Aligned_cols=32 Identities=41% Similarity=0.486 Sum_probs=23.9
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
.|.++ |-.|+||||++..||..+ |+ -.+|+|-
T Consensus 2 ~I~l~-G~pGsGKsT~~~~La~~~---~~--~~id~d~ 33 (180)
T PRK03839 2 IIAIT-GTPGVGKTTVSKLLAEKL---GY--EYVDLTE 33 (180)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CC--cEEehhh
Confidence 35666 889999999999988877 33 3466663
No 483
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=89.19 E-value=1.8 Score=40.26 Aligned_cols=35 Identities=37% Similarity=0.559 Sum_probs=28.5
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
-++.++ + .|=||||-|..+|....-.|+||++|=+
T Consensus 30 li~V~T-G-~GKGKTTAAlG~alRa~GhG~rv~vvQF 64 (198)
T COG2109 30 LIIVFT-G-NGKGKTTAALGLALRALGHGLRVGVVQF 64 (198)
T ss_pred eEEEEe-c-CCCChhHHHHHHHHHHhcCCCEEEEEEE
Confidence 344444 4 4679999999999999999999999865
No 484
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=89.15 E-value=4.2 Score=36.66 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=38.5
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHH-HHHHHHHcC--CCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~-~~i~~l~~~--~~~~~gvV~N~~~~~ 352 (532)
..+++.|+|+|+...........+..+|.+++|.... ..++..+. ..++.++.. +.+ +-+|.|+++..
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-viiv~nK~Dl~ 116 (166)
T cd01893 45 ERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVP-IILVGNKSDLR 116 (166)
T ss_pred CeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhcc
Confidence 4578899999864322211122234678888776654 44555543 334444432 444 56778997753
No 485
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.10 E-value=0.43 Score=47.93 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=38.9
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHH----CCCcEEEEEcCCCCCCCCCCCCCcc
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAG----MGARVGIFDADVYGPSLPTMVSPEN 230 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~----~G~rVllID~D~~~~s~~~~lg~~~ 230 (532)
...|+|.+. |-+|+|||+++-.||+.|+- +-++..+|+.+.. +..+.+|+...
T Consensus 175 t~NRliLlh-GPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh-sLFSKWFsESg 231 (423)
T KOG0744|consen 175 TWNRLILLH-GPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH-SLFSKWFSESG 231 (423)
T ss_pred eeeeEEEEe-CCCCCChhHHHHHHHHhheeeecCccccceEEEEehh-HHHHHHHhhhh
Confidence 334677777 88999999999999999983 2467778888763 35555665443
No 486
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=89.10 E-value=0.61 Score=50.91 Aligned_cols=40 Identities=28% Similarity=0.350 Sum_probs=34.8
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
+.++.|. +-.|+|||+++.+++...++.|.+|+.|+++-.
T Consensus 273 g~~~li~-G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~ 312 (509)
T PRK09302 273 GSIILVS-GATGTGKTLLASKFAEAACRRGERCLLFAFEES 312 (509)
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 3466665 899999999999999999999999999998753
No 487
>PRK13949 shikimate kinase; Provisional
Probab=89.03 E-value=0.37 Score=44.37 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=26.1
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
|+.|.++ |-.|+||||++..||..|. . -.+|+|.
T Consensus 1 m~~I~li-G~~GsGKstl~~~La~~l~---~--~~id~D~ 34 (169)
T PRK13949 1 MARIFLV-GYMGAGKTTLGKALARELG---L--SFIDLDF 34 (169)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHcC---C--CeecccH
Confidence 3467777 7899999999999998873 2 3677774
No 488
>PRK01184 hypothetical protein; Provisional
Probab=88.95 E-value=0.5 Score=43.85 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=21.9
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
|++|.++ |..|+||||++. + +.+.|..+ +|+
T Consensus 1 ~~~i~l~-G~~GsGKsT~a~-~---~~~~g~~~--i~~ 31 (184)
T PRK01184 1 MKIIGVV-GMPGSGKGEFSK-I---AREMGIPV--VVM 31 (184)
T ss_pred CcEEEEE-CCCCCCHHHHHH-H---HHHcCCcE--EEh
Confidence 4577777 999999999864 3 44567655 554
No 489
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=88.90 E-value=0.41 Score=45.27 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=24.9
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+.+.+|..|+||||+|..||..+ |..+ ++..|.
T Consensus 5 ~i~i~G~~G~GKst~a~~l~~~~---~~~~-~~~~D~ 37 (197)
T PRK12339 5 IHFIGGIPGVGKTSISGYIARHR---AIDI-VLSGDY 37 (197)
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCeE-EehhHH
Confidence 44455999999999999998875 5544 667775
No 490
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=88.90 E-value=0.35 Score=46.88 Aligned_cols=40 Identities=33% Similarity=0.490 Sum_probs=29.3
Q ss_pred ccCcc-eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 174 LQKIS-NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 174 ~~~~~-kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
..+|+ ..|.+.+|-.||||||+|..+|..|.- + -+|..|.
T Consensus 83 ir~~~~p~IILIGGasGVGkStIA~ElA~rLgI---~-~visTD~ 123 (299)
T COG2074 83 IRKMKRPLIILIGGASGVGKSTIAGELARRLGI---R-SVISTDS 123 (299)
T ss_pred HhccCCCeEEEecCCCCCChhHHHHHHHHHcCC---c-eeecchH
Confidence 33444 467777899999999999999988753 2 2566665
No 491
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=88.87 E-value=0.54 Score=43.20 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=29.0
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
++.+.|+ |..|+|||++...+...+.+.+.-++-++++...
T Consensus 24 ~~~~ll~-G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~~ 64 (185)
T PF13191_consen 24 PRNLLLT-GESGSGKTSLLRALLDRLAERGGYVISINCDDSE 64 (185)
T ss_dssp ---EEE--B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETTT
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHhcCCEEEEEEEeccc
Confidence 3566666 9999999999999999998875448888888763
No 492
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=88.87 E-value=0.64 Score=56.01 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=29.5
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 214 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID 214 (532)
...++|+|+ |.||+||||+|..++..+...-.-.+.+|
T Consensus 205 ~~~~vvgI~-G~gGiGKTTLA~~l~~~l~~~F~g~vfv~ 242 (1153)
T PLN03210 205 EEVRMVGIW-GSSGIGKTTIARALFSRLSRQFQSSVFID 242 (1153)
T ss_pred CceEEEEEE-cCCCCchHHHHHHHHHHHhhcCCeEEEee
Confidence 346799999 99999999999999988876533334454
No 493
>KOG3381 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.86 E-value=0.79 Score=40.46 Aligned_cols=58 Identities=14% Similarity=0.350 Sum_probs=45.0
Q ss_pred cccHHHHHHHhccCCCCCCCCCccccCCeeEEEE--ec---CC--CeEEEEEEeCCCCCCchHHH
Q 009574 79 GTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQI--NE---AL--GEVSFRLELTTPACPIKDMF 136 (532)
Q Consensus 79 ~~~~~~v~~~L~~V~DPel~~~Iv~lglv~~v~i--~~---~~--~~v~v~l~lt~~~cp~~~~l 136 (532)
....+.+.+.++.|.|||=+...-+|+.|+.-.| .+ .. .-|.|.+++|.|+|.++-.+
T Consensus 33 ~~~~~~~~dlir~I~DPEhP~TLeqL~VV~ee~v~V~d~~~~~~~s~V~i~ftPTipHCSmaTlI 97 (161)
T KOG3381|consen 33 SEDAEEIFDLIRDIRDPEHPLTLEQLNVVSEEGVEVDDPNVGDEESYVRITFTPTIPHCSMATLI 97 (161)
T ss_pred chhHHHHHHHHhccCCCCCCccHHHccceeecceEeecCCCCCcceEEEEEeccCCCcchHHhhh
Confidence 4567789999999999999988888888865444 32 11 36899999999999876543
No 494
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=88.79 E-value=4.6 Score=37.28 Aligned_cols=66 Identities=11% Similarity=0.157 Sum_probs=34.6
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc----CCCCEEEEEEecccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHF 351 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~ 351 (532)
.+.+.++|+|+...........+..++.+++|+..... ++......+..+.+ .+.+ +-++.|+++.
T Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-vivv~NK~Dl 132 (190)
T cd00879 62 NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVP-FLILGNKIDL 132 (190)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCC-EEEEEeCCCC
Confidence 45677888875332222112223456788877776543 34333333333322 2344 5677899764
No 495
>PRK13695 putative NTPase; Provisional
Probab=88.74 E-value=0.77 Score=42.27 Aligned_cols=31 Identities=32% Similarity=0.531 Sum_probs=25.9
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEE
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG 211 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVl 211 (532)
.|+++ +.+|+||||++..++..+...|.++.
T Consensus 2 ~i~lt-G~~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 2 KIGIT-GPPGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 45666 88999999999999988887788764
No 496
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=88.57 E-value=0.86 Score=43.44 Aligned_cols=37 Identities=24% Similarity=0.247 Sum_probs=31.9
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 214 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID 214 (532)
+++.|+|= |=-|+||||.+..|+..|..+|++|.+.=
T Consensus 2 ~g~fI~iE-GiDGaGKTT~~~~L~~~l~~~g~~v~~tr 38 (208)
T COG0125 2 KGMFIVIE-GIDGAGKTTQAELLKERLEERGIKVVLTR 38 (208)
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 35678887 77889999999999999999999887753
No 497
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=88.43 E-value=0.49 Score=44.73 Aligned_cols=40 Identities=28% Similarity=0.410 Sum_probs=28.4
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 220 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~ 220 (532)
+++.++.|-.|+||||++..+...+. +...+.||.|....
T Consensus 15 P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQ 54 (199)
T ss_dssp -EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGG
T ss_pred CEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHH
Confidence 46666779999999999998877665 56788999998653
No 498
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=88.38 E-value=2.7 Score=38.16 Aligned_cols=68 Identities=16% Similarity=0.191 Sum_probs=40.1
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC--CCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL--KVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~--~~~~~gvV~N~~~~~ 352 (532)
..+.+.++|||+.-....+.......+|.+++|...+. .++..+...++.+... +.+ +-+|.|+++..
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iiiv~nK~Dl~ 117 (166)
T cd00877 47 GKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIP-IVLCGNKVDIK 117 (166)
T ss_pred EEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEEchhcc
Confidence 45678899997632211111122345788888877654 4556666665655543 455 45888997653
No 499
>PRK04004 translation initiation factor IF-2; Validated
Probab=88.35 E-value=2.7 Score=46.70 Aligned_cols=64 Identities=17% Similarity=0.144 Sum_probs=40.0
Q ss_pred CEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 287 DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 287 D~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
.+.++|||+..............+|.+++|+..+..-.......+..+...+.+ +-+++|+++.
T Consensus 72 ~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vp-iIvviNK~D~ 135 (586)
T PRK04004 72 GLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTP-FVVAANKIDR 135 (586)
T ss_pred CEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCC
Confidence 379999987433222222223457889999887642223344455566667888 5588899774
No 500
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=88.20 E-value=0.43 Score=42.12 Aligned_cols=30 Identities=43% Similarity=0.532 Sum_probs=23.0
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
|+|+ |..|+||||+|..||..+ |.. ++|.|
T Consensus 2 I~i~-G~~GsGKst~a~~la~~~---~~~--~~~~~ 31 (147)
T cd02020 2 IAID-GPAGSGKSTVAKLLAKKL---GLP--YLDTG 31 (147)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHh---CCc--eeccc
Confidence 4555 999999999999999776 433 56666
Done!