Query 009574
Match_columns 532
No_of_seqs 652 out of 3470
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 08:15:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fwy_A Light-independent proto 100.0 5.4E-32 1.9E-36 273.2 21.3 232 176-421 46-294 (314)
2 1g3q_A MIND ATPase, cell divis 100.0 7.9E-32 2.7E-36 261.4 18.4 228 177-419 1-235 (237)
3 3ea0_A ATPase, para family; al 100.0 3.3E-32 1.1E-36 265.3 13.9 228 176-419 2-244 (245)
4 3q9l_A Septum site-determining 100.0 1.5E-31 5.2E-36 263.0 14.8 230 177-419 1-248 (260)
5 2ph1_A Nucleotide-binding prot 100.0 1.5E-30 5.3E-35 256.9 20.5 226 172-399 12-244 (262)
6 1hyq_A MIND, cell division inh 100.0 6.7E-31 2.3E-35 259.2 14.8 228 177-420 1-235 (263)
7 1wcv_1 SOJ, segregation protei 100.0 3.2E-31 1.1E-35 261.0 10.2 232 176-424 4-249 (257)
8 4dzz_A Plasmid partitioning pr 100.0 4.2E-30 1.4E-34 243.6 15.6 199 178-421 1-205 (206)
9 3end_A Light-independent proto 100.0 1.8E-29 6.1E-34 254.9 19.7 232 174-421 37-287 (307)
10 3k9g_A PF-32 protein; ssgcid, 100.0 1.4E-29 4.7E-34 250.5 17.2 231 174-421 23-267 (267)
11 1cp2_A CP2, nitrogenase iron p 100.0 5.1E-30 1.7E-34 253.7 14.1 233 178-421 1-248 (269)
12 2afh_E Nitrogenase iron protei 100.0 1.2E-29 4E-34 254.1 15.4 232 178-420 2-250 (289)
13 3kjh_A CO dehydrogenase/acetyl 100.0 1.5E-29 5.2E-34 247.0 15.5 224 180-421 2-253 (254)
14 2oze_A ORF delta'; para, walke 100.0 7.9E-29 2.7E-33 249.0 13.5 239 176-425 32-294 (298)
15 3ez2_A Plasmid partition prote 100.0 1.9E-29 6.4E-34 264.1 7.9 242 175-425 105-396 (398)
16 3pg5_A Uncharacterized protein 100.0 2.1E-28 7.3E-33 252.5 15.5 244 178-423 1-351 (361)
17 3ez9_A Para; DNA binding, wing 100.0 5.2E-29 1.8E-33 261.1 10.4 242 175-425 108-399 (403)
18 3cwq_A Para family chromosome 99.9 6.4E-28 2.2E-32 230.0 11.1 199 179-426 1-204 (209)
19 2xj4_A MIPZ; replication, cell 99.9 4.3E-28 1.5E-32 242.4 2.6 223 177-418 3-265 (286)
20 3la6_A Tyrosine-protein kinase 99.9 1E-24 3.5E-29 217.4 15.8 172 176-353 90-268 (286)
21 3luu_A Uncharacterized protein 99.9 2.3E-25 7.9E-30 186.1 8.4 92 428-522 8-100 (101)
22 3bfv_A CAPA1, CAPB2, membrane 99.9 3.5E-24 1.2E-28 212.1 13.2 171 176-352 80-257 (271)
23 3cio_A ETK, tyrosine-protein k 99.9 1.1E-23 3.8E-28 211.5 13.3 172 176-353 102-280 (299)
24 3zq6_A Putative arsenical pump 99.9 1.6E-23 5.4E-28 212.9 10.0 207 177-385 12-301 (324)
25 3ug7_A Arsenical pump-driving 99.9 5.4E-24 1.8E-28 218.4 6.2 202 175-385 22-316 (349)
26 3fkq_A NTRC-like two-domain pr 99.9 9E-24 3.1E-28 218.9 7.4 197 175-387 140-353 (373)
27 2woj_A ATPase GET3; tail-ancho 99.9 2.4E-23 8.3E-28 213.7 8.9 175 175-350 14-275 (354)
28 2l6p_A PHAC1, PHAC2 and PHAD g 99.9 1.4E-22 4.8E-27 174.6 9.4 88 428-521 4-92 (124)
29 2l6n_A Uncharacterized protein 99.9 1.1E-22 3.8E-27 176.5 8.8 89 428-521 10-99 (132)
30 3iqw_A Tail-anchored protein t 99.9 9.7E-22 3.3E-26 199.8 13.5 202 175-384 12-303 (334)
31 2woo_A ATPase GET3; tail-ancho 99.9 2.8E-22 9.6E-27 204.0 6.9 206 177-384 17-300 (329)
32 3io3_A DEHA2D07832P; chaperone 99.8 6.2E-21 2.1E-25 194.8 8.9 205 176-385 15-313 (348)
33 1byi_A Dethiobiotin synthase; 99.8 3.7E-20 1.3E-24 177.5 13.0 196 179-386 2-208 (224)
34 3igf_A ALL4481 protein; two-do 99.8 1.5E-19 5.2E-24 185.7 17.9 266 179-508 2-370 (374)
35 3o2g_A Gamma-butyrobetaine dio 99.7 2.7E-18 9.3E-23 178.1 7.1 87 432-520 9-95 (388)
36 1ihu_A Arsenical pump-driving 99.7 3E-18 1E-22 187.9 6.8 205 176-385 324-569 (589)
37 1ihu_A Arsenical pump-driving 99.7 4.1E-18 1.4E-22 186.9 7.3 164 180-352 9-240 (589)
38 2xxa_A Signal recognition part 99.7 6.7E-18 2.3E-22 177.2 2.0 241 79-378 21-271 (433)
39 1uwd_A Hypothetical protein TM 99.6 8E-16 2.8E-20 128.9 10.3 84 79-163 5-88 (103)
40 3lno_A Putative uncharacterize 99.6 2.6E-16 9.1E-21 132.8 6.9 84 79-163 7-91 (108)
41 3cq1_A Putative uncharacterize 99.6 1.8E-15 6E-20 126.8 9.7 82 80-163 6-87 (103)
42 1j8m_F SRP54, signal recogniti 99.6 1.5E-14 5.1E-19 144.5 12.1 241 80-379 20-271 (297)
43 1zu4_A FTSY; GTPase, signal re 99.5 7E-14 2.4E-18 141.1 13.3 171 177-379 104-286 (320)
44 1ls1_A Signal recognition part 99.5 1E-13 3.5E-18 138.5 11.6 167 177-379 97-269 (295)
45 2ffh_A Protein (FFH); SRP54, s 99.5 2.4E-13 8.2E-18 141.7 12.4 240 79-379 21-269 (425)
46 3of5_A Dethiobiotin synthetase 99.4 2.7E-13 9.4E-18 130.2 10.9 194 177-382 3-206 (228)
47 2j37_W Signal recognition part 99.4 7.5E-14 2.6E-18 148.5 3.7 241 79-378 22-271 (504)
48 3dm5_A SRP54, signal recogniti 99.4 2.9E-12 1E-16 133.7 13.7 241 79-379 22-271 (443)
49 2v3c_C SRP54, signal recogniti 99.4 7.6E-12 2.6E-16 131.1 16.1 164 178-379 99-270 (432)
50 1yrb_A ATP(GTP)binding protein 99.4 5.4E-13 1.8E-17 130.5 6.7 47 176-223 11-57 (262)
51 3fgn_A Dethiobiotin synthetase 99.3 8.6E-12 2.9E-16 121.2 11.7 194 175-385 23-225 (251)
52 3kl4_A SRP54, signal recogniti 99.3 1.8E-11 6.2E-16 127.7 12.6 242 79-379 18-270 (433)
53 1vma_A Cell division protein F 99.2 7.9E-11 2.7E-15 117.8 14.9 168 177-380 103-282 (306)
54 3qxc_A Dethiobiotin synthetase 99.2 7E-11 2.4E-15 114.1 14.0 176 171-352 14-202 (242)
55 3ux2_A MIP18 family protein FA 99.2 8.2E-12 2.8E-16 106.6 3.0 77 81-157 9-91 (130)
56 2px0_A Flagellar biosynthesis 99.0 3.9E-10 1.3E-14 112.4 9.2 160 178-379 105-271 (296)
57 3p32_A Probable GTPase RV1496/ 98.8 1.3E-08 4.6E-13 104.1 11.6 151 177-351 78-229 (355)
58 2r8r_A Sensor protein; KDPD, P 98.7 2.9E-08 9.9E-13 94.0 6.9 46 177-222 4-49 (228)
59 3e70_C DPA, signal recognition 98.6 6.4E-08 2.2E-12 97.7 6.6 248 78-380 45-301 (328)
60 2yhs_A FTSY, cell division pro 98.4 1.2E-06 4.1E-11 92.2 10.8 167 177-379 292-470 (503)
61 2p67_A LAO/AO transport system 98.3 3.4E-06 1.2E-10 85.6 13.1 127 176-321 54-181 (341)
62 1rj9_A FTSY, signal recognitio 98.0 8.1E-05 2.8E-09 74.1 13.7 167 177-380 101-280 (304)
63 2obn_A Hypothetical protein; s 97.9 5.2E-05 1.8E-09 76.3 11.6 166 178-383 152-337 (349)
64 3pzx_A Formate--tetrahydrofola 97.9 6.5E-06 2.2E-10 84.9 4.8 52 176-230 55-109 (557)
65 4a0g_A Adenosylmethionine-8-am 97.9 2.9E-05 1E-09 87.7 9.8 88 285-385 201-298 (831)
66 2og2_A Putative signal recogni 97.7 0.00047 1.6E-08 70.1 13.8 41 178-219 157-197 (359)
67 2rdo_7 EF-G, elongation factor 97.7 0.0002 6.8E-09 79.5 11.9 93 284-383 80-173 (704)
68 3b9q_A Chloroplast SRP recepto 97.5 0.00092 3.1E-08 66.4 13.2 42 177-219 99-140 (302)
69 1g5t_A COB(I)alamin adenosyltr 97.5 0.00051 1.7E-08 63.4 9.9 38 178-217 29-66 (196)
70 2h5e_A Peptide chain release f 97.4 0.00048 1.6E-08 73.8 10.1 89 283-378 79-167 (529)
71 1u94_A RECA protein, recombina 97.3 0.00036 1.2E-08 71.0 7.0 39 178-217 63-101 (356)
72 1xjc_A MOBB protein homolog; s 97.1 0.00059 2E-08 61.6 6.1 42 177-219 3-44 (169)
73 1xp8_A RECA protein, recombina 97.0 0.0011 3.8E-08 67.5 7.9 38 179-217 75-112 (366)
74 2www_A Methylmalonic aciduria 97.0 0.0084 2.9E-07 60.6 13.6 43 178-221 74-116 (349)
75 1dar_A EF-G, elongation factor 96.8 0.0049 1.7E-07 68.2 11.4 88 283-377 74-161 (691)
76 3con_A GTPase NRAS; structural 96.7 0.021 7E-07 51.5 13.4 87 284-376 67-158 (190)
77 2c78_A Elongation factor TU-A; 96.7 0.0066 2.3E-07 62.7 11.0 69 284-352 73-141 (405)
78 2zr9_A Protein RECA, recombina 96.7 0.0026 8.9E-08 64.4 7.1 39 178-217 61-99 (349)
79 2qm8_A GTPase/ATPase; G protei 96.6 0.011 3.8E-07 59.4 11.6 42 177-219 54-95 (337)
80 2gf9_A RAS-related protein RAB 96.6 0.031 1.1E-06 50.4 13.2 87 284-375 69-159 (189)
81 2b8t_A Thymidine kinase; deoxy 96.6 0.0094 3.2E-07 56.2 9.8 36 178-214 12-47 (223)
82 2xex_A Elongation factor G; GT 96.6 0.011 3.7E-07 65.5 11.8 87 283-376 72-158 (693)
83 2elf_A Protein translation elo 96.5 0.0096 3.3E-07 60.7 10.2 67 284-351 58-125 (370)
84 3tr5_A RF-3, peptide chain rel 96.4 0.001 3.5E-08 71.2 2.6 88 283-377 79-166 (528)
85 2ce2_X GTPase HRAS; signaling 96.4 0.053 1.8E-06 47.0 13.4 87 284-376 49-140 (166)
86 3vqt_A RF-3, peptide chain rel 96.4 0.02 6.8E-07 61.5 12.3 89 283-378 97-185 (548)
87 3iev_A GTP-binding protein ERA 96.4 0.016 5.6E-07 57.3 10.7 85 285-374 58-153 (308)
88 2g0t_A Conserved hypothetical 96.3 0.019 6.6E-07 57.7 11.1 137 178-348 169-323 (350)
89 2yvu_A Probable adenylyl-sulfa 96.3 0.0041 1.4E-07 56.5 5.8 40 178-218 13-52 (186)
90 1kao_A RAP2A; GTP-binding prot 96.3 0.11 3.7E-06 45.1 14.7 67 285-352 50-121 (167)
91 3t1o_A Gliding protein MGLA; G 96.2 0.067 2.3E-06 48.1 13.5 68 284-352 72-148 (198)
92 1d2e_A Elongation factor TU (E 96.2 0.0098 3.4E-07 61.2 8.6 69 284-352 64-132 (397)
93 3hr8_A Protein RECA; alpha and 96.2 0.0075 2.6E-07 61.1 7.3 40 178-218 61-100 (356)
94 1np6_A Molybdopterin-guanine d 96.2 0.0072 2.4E-07 54.8 6.4 42 177-219 5-46 (174)
95 3a4m_A L-seryl-tRNA(SEC) kinas 96.2 0.0045 1.5E-07 59.8 5.4 40 178-218 4-43 (260)
96 3clv_A RAB5 protein, putative; 96.2 0.18 6.2E-06 45.3 16.1 64 286-350 93-158 (208)
97 1z2a_A RAS-related protein RAB 96.1 0.029 9.9E-07 49.1 10.0 86 285-375 53-141 (168)
98 3bc1_A RAS-related protein RAB 96.1 0.17 5.9E-06 45.1 15.5 86 285-375 69-159 (195)
99 2h57_A ADP-ribosylation factor 96.1 0.052 1.8E-06 48.9 11.9 68 284-352 65-139 (190)
100 2efe_B Small GTP-binding prote 96.1 0.064 2.2E-06 47.6 12.4 68 285-352 60-130 (181)
101 2a9k_A RAS-related protein RAL 96.1 0.05 1.7E-06 48.4 11.6 67 285-352 65-136 (187)
102 1upt_A ARL1, ADP-ribosylation 96.1 0.16 5.5E-06 44.3 14.8 68 284-352 49-121 (171)
103 3iby_A Ferrous iron transport 96.1 0.026 8.8E-07 54.4 10.0 89 284-380 46-146 (256)
104 3oes_A GTPase rhebl1; small GT 96.0 0.14 4.6E-06 46.6 14.5 87 284-375 70-161 (201)
105 2g6b_A RAS-related protein RAB 96.0 0.076 2.6E-06 47.0 12.2 86 285-375 59-148 (180)
106 1nks_A Adenylate kinase; therm 95.9 0.0063 2.2E-07 55.2 4.9 38 178-216 1-38 (194)
107 1zj6_A ADP-ribosylation factor 95.9 0.26 8.8E-06 44.0 15.4 68 284-352 58-130 (187)
108 3dz8_A RAS-related protein RAB 95.9 0.036 1.2E-06 50.1 9.6 87 284-375 70-160 (191)
109 2nzj_A GTP-binding protein REM 95.9 0.1 3.5E-06 45.8 12.5 67 285-352 51-124 (175)
110 1ky3_A GTP-binding protein YPT 95.8 0.18 6.2E-06 44.4 14.1 67 284-351 56-130 (182)
111 2hxs_A RAB-26, RAS-related pro 95.8 0.12 4.2E-06 45.5 13.0 87 285-375 55-147 (178)
112 1zd9_A ADP-ribosylation factor 95.8 0.12 4E-06 46.5 12.9 68 284-352 65-137 (188)
113 3t5g_A GTP-binding protein RHE 95.8 0.11 3.9E-06 46.0 12.7 86 285-375 53-143 (181)
114 1vco_A CTP synthetase; tetrame 95.8 0.029 1E-06 59.7 9.8 46 176-221 10-56 (550)
115 2wsm_A Hydrogenase expression/ 95.8 0.0093 3.2E-07 55.5 5.3 39 178-218 30-68 (221)
116 1g16_A RAS-related protein SEC 95.8 0.07 2.4E-06 46.6 10.9 85 285-375 51-139 (170)
117 4bas_A ADP-ribosylation factor 95.8 0.14 4.8E-06 46.1 13.2 68 284-352 61-140 (199)
118 1wf3_A GTP-binding protein; GT 95.8 0.043 1.5E-06 54.1 10.3 68 284-352 53-130 (301)
119 1r8s_A ADP-ribosylation factor 95.7 0.4 1.4E-05 41.4 15.8 68 284-352 42-114 (164)
120 3j25_A Tetracycline resistance 95.7 0.013 4.6E-07 64.1 7.2 88 283-377 64-151 (638)
121 2bcg_Y Protein YP2, GTP-bindin 95.7 0.1 3.5E-06 47.6 12.2 68 285-352 56-126 (206)
122 1u8z_A RAS-related protein RAL 95.7 0.063 2.1E-06 46.7 10.3 68 284-352 50-122 (168)
123 1rz3_A Hypothetical protein rb 95.7 0.014 4.7E-07 53.9 6.1 41 178-219 22-62 (201)
124 2fg5_A RAB-22B, RAS-related pr 95.7 0.08 2.7E-06 47.8 11.1 69 284-352 70-141 (192)
125 1z0j_A RAB-22, RAS-related pro 95.7 0.06 2.1E-06 47.0 10.0 68 285-352 54-124 (170)
126 2dr3_A UPF0273 protein PH0284; 95.6 0.012 4.1E-07 55.6 5.6 39 179-218 24-62 (247)
127 3tkl_A RAS-related protein RAB 95.5 0.11 3.8E-06 46.7 11.7 87 285-376 64-154 (196)
128 1z08_A RAS-related protein RAB 95.5 0.11 3.6E-06 45.5 11.2 87 284-375 53-143 (170)
129 2lkc_A Translation initiation 95.5 0.063 2.2E-06 47.4 9.6 68 284-352 53-120 (178)
130 1s1m_A CTP synthase; CTP synth 95.5 0.054 1.9E-06 57.6 10.4 44 178-221 3-47 (545)
131 2j9r_A Thymidine kinase; TK1, 95.4 0.036 1.2E-06 51.7 7.9 37 177-214 27-63 (214)
132 1z0f_A RAB14, member RAS oncog 95.4 0.11 3.7E-06 45.8 10.9 68 284-352 62-133 (179)
133 2dyk_A GTP-binding protein; GT 95.4 0.062 2.1E-06 46.6 9.0 66 285-351 48-120 (161)
134 1r2q_A RAS-related protein RAB 95.4 0.076 2.6E-06 46.3 9.6 69 284-352 53-124 (170)
135 3cph_A RAS-related protein SEC 95.3 0.14 4.6E-06 46.8 11.6 86 285-376 68-157 (213)
136 2a5j_A RAS-related protein RAB 95.3 0.27 9.2E-06 44.1 13.3 86 285-375 69-158 (191)
137 2gco_A H9, RHO-related GTP-bin 95.3 0.11 3.6E-06 47.4 10.5 67 285-352 72-142 (201)
138 2cvh_A DNA repair and recombin 95.2 0.019 6.4E-07 53.2 5.4 36 179-218 21-56 (220)
139 1a7j_A Phosphoribulokinase; tr 95.2 0.0093 3.2E-07 58.7 3.4 41 178-219 5-45 (290)
140 4dsu_A GTPase KRAS, isoform 2B 95.2 0.22 7.7E-06 44.2 12.3 86 285-376 51-141 (189)
141 1uj2_A Uridine-cytidine kinase 95.2 0.015 5E-07 55.8 4.5 42 177-219 21-67 (252)
142 3lvq_E ARF-GAP with SH3 domain 95.2 0.28 9.7E-06 51.6 14.9 124 284-431 364-492 (497)
143 2ew1_A RAS-related protein RAB 95.1 0.17 5.8E-06 46.3 11.6 68 285-352 74-144 (201)
144 1zbd_A Rabphilin-3A; G protein 95.1 0.15 5.2E-06 46.2 11.2 86 285-375 56-145 (203)
145 2f1r_A Molybdopterin-guanine d 95.1 0.015 5.1E-07 52.5 4.1 41 177-218 1-41 (171)
146 3bh0_A DNAB-like replicative h 95.1 0.021 7.1E-07 56.8 5.5 38 179-217 69-106 (315)
147 1ksh_A ARF-like protein 2; sma 95.1 0.39 1.3E-05 42.7 13.7 68 284-352 60-132 (186)
148 2w0m_A SSO2452; RECA, SSPF, un 95.1 0.022 7.6E-07 53.0 5.4 39 178-217 23-61 (235)
149 1fzq_A ADP-ribosylation factor 95.0 0.3 1E-05 43.5 12.8 68 284-352 58-130 (181)
150 1ek0_A Protein (GTP-binding pr 95.0 0.14 4.8E-06 44.5 10.3 68 285-353 51-122 (170)
151 2bov_A RAla, RAS-related prote 95.0 0.24 8.3E-06 44.8 12.3 67 285-352 61-132 (206)
152 2erx_A GTP-binding protein DI- 95.0 0.12 4E-06 45.2 9.7 68 284-352 49-122 (172)
153 2fn4_A P23, RAS-related protei 95.0 0.18 6.2E-06 44.4 11.0 67 285-352 56-127 (181)
154 2b6h_A ADP-ribosylation factor 95.0 0.33 1.1E-05 43.8 12.9 81 284-374 71-156 (192)
155 1jny_A EF-1-alpha, elongation 95.0 0.12 4.1E-06 53.7 11.1 70 283-352 81-157 (435)
156 2pez_A Bifunctional 3'-phospho 94.9 0.03 1E-06 50.3 5.6 41 178-219 5-45 (179)
157 2h17_A ADP-ribosylation factor 94.9 0.2 6.8E-06 44.6 11.2 68 284-352 63-135 (181)
158 2dy1_A Elongation factor G; tr 94.9 0.072 2.5E-06 58.6 9.7 83 284-374 72-154 (665)
159 3pqc_A Probable GTP-binding pr 94.9 0.12 4.2E-06 46.2 9.8 42 310-352 105-146 (195)
160 2hf9_A Probable hydrogenase ni 94.9 0.024 8E-07 52.9 5.0 39 178-218 38-76 (226)
161 3io5_A Recombination and repai 94.9 0.033 1.1E-06 55.2 6.1 37 180-217 30-68 (333)
162 3tw8_B RAS-related protein RAB 94.9 0.12 4.2E-06 45.5 9.5 88 285-376 57-146 (181)
163 2x77_A ADP-ribosylation factor 94.9 0.35 1.2E-05 43.2 12.7 68 284-352 64-136 (189)
164 3uie_A Adenylyl-sulfate kinase 94.9 0.031 1.1E-06 51.3 5.7 42 176-218 23-64 (200)
165 2il1_A RAB12; G-protein, GDP, 94.9 0.19 6.6E-06 45.3 11.0 67 285-352 74-144 (192)
166 2fv8_A H6, RHO-related GTP-bin 94.8 0.13 4.5E-06 47.0 9.9 67 285-352 72-142 (207)
167 3luu_A Uncharacterized protein 94.8 0.015 5.3E-07 47.5 3.0 34 487-520 7-41 (101)
168 3kkq_A RAS-related protein M-R 94.8 0.24 8.2E-06 43.9 11.4 87 285-376 65-156 (183)
169 3p26_A Elongation factor 1 alp 94.8 0.24 8.3E-06 52.1 13.1 69 284-352 109-184 (483)
170 4a1f_A DNAB helicase, replicat 94.8 0.029 9.8E-07 56.3 5.5 38 179-217 47-84 (338)
171 3bgw_A DNAB-like replicative h 94.7 0.025 8.5E-07 59.1 5.0 39 179-218 198-236 (444)
172 2bme_A RAB4A, RAS-related prot 94.7 0.32 1.1E-05 43.2 11.8 67 285-352 58-128 (186)
173 1x3s_A RAS-related protein RAB 94.7 0.15 5.2E-06 45.7 9.7 68 284-351 62-133 (195)
174 4dcu_A GTP-binding protein ENG 94.6 0.047 1.6E-06 57.2 7.0 67 284-351 69-143 (456)
175 2ywe_A GTP-binding protein LEP 94.6 0.13 4.6E-06 55.5 10.6 85 284-375 71-155 (600)
176 2oil_A CATX-8, RAS-related pro 94.6 0.71 2.4E-05 41.2 14.2 69 284-352 72-143 (193)
177 4fn5_A EF-G 1, elongation fact 94.6 0.34 1.2E-05 53.6 14.1 88 284-378 83-170 (709)
178 1m2o_B GTP-binding protein SAR 94.5 0.34 1.2E-05 43.6 11.8 82 284-375 65-151 (190)
179 1m7g_A Adenylylsulfate kinase; 94.5 0.031 1.1E-06 51.8 4.7 40 177-217 24-64 (211)
180 3j2k_7 ERF3, eukaryotic polype 94.5 0.15 5.2E-06 53.0 10.4 68 284-351 93-167 (439)
181 2atv_A RERG, RAS-like estrogen 94.4 0.32 1.1E-05 43.8 11.4 68 284-353 74-146 (196)
182 2w58_A DNAI, primosome compone 94.4 0.042 1.4E-06 50.3 5.4 37 179-216 55-91 (202)
183 3ec2_A DNA replication protein 94.4 0.029 9.9E-07 50.5 4.1 36 179-215 39-75 (180)
184 1moz_A ARL1, ADP-ribosylation 94.4 0.44 1.5E-05 42.1 12.1 69 284-352 60-132 (183)
185 3lxx_A GTPase IMAP family memb 94.4 0.51 1.7E-05 44.2 13.0 21 179-200 30-50 (239)
186 1ega_A Protein (GTP-binding pr 94.3 0.16 5.4E-06 50.0 9.7 67 284-352 54-129 (301)
187 1z06_A RAS-related protein RAB 94.3 0.44 1.5E-05 42.5 12.1 87 285-376 68-160 (189)
188 2p5s_A RAS and EF-hand domain 94.3 0.23 7.9E-06 45.0 10.2 67 285-352 76-146 (199)
189 3i8s_A Ferrous iron transport 94.3 0.3 1E-05 47.2 11.4 89 284-380 48-148 (274)
190 2o52_A RAS-related protein RAB 94.3 0.28 9.6E-06 44.5 10.7 67 285-352 73-143 (200)
191 3t61_A Gluconokinase; PSI-biol 94.3 0.026 9E-07 51.8 3.6 39 174-218 14-52 (202)
192 3o47_A ADP-ribosylation factor 94.2 0.53 1.8E-05 46.8 13.4 82 284-375 207-293 (329)
193 3cpj_B GTP-binding protein YPT 94.1 0.42 1.4E-05 44.2 11.7 67 285-352 61-131 (223)
194 2pbr_A DTMP kinase, thymidylat 94.1 0.062 2.1E-06 48.5 5.8 34 180-214 2-35 (195)
195 1kht_A Adenylate kinase; phosp 94.1 0.033 1.1E-06 50.2 3.8 37 179-216 4-40 (192)
196 1xx6_A Thymidine kinase; NESG, 94.1 0.075 2.6E-06 48.7 6.2 36 178-214 8-43 (191)
197 1cr0_A DNA primase/helicase; R 94.0 0.059 2E-06 52.7 5.9 39 178-217 35-74 (296)
198 3c5c_A RAS-like protein 12; GD 94.0 0.42 1.4E-05 42.8 11.2 86 284-375 67-159 (187)
199 2gks_A Bifunctional SAT/APS ki 94.0 0.048 1.6E-06 58.5 5.5 40 177-217 371-410 (546)
200 1f6b_A SAR1; gtpases, N-termin 94.0 0.34 1.2E-05 44.0 10.6 68 284-352 67-139 (198)
201 2y8e_A RAB-protein 6, GH09086P 94.0 0.3 1E-05 42.9 9.9 67 285-352 62-132 (179)
202 1qhx_A CPT, protein (chloramph 93.9 0.036 1.2E-06 49.5 3.7 35 179-217 4-38 (178)
203 3q85_A GTP-binding protein REM 93.9 0.3 1E-05 42.5 9.8 86 285-375 50-141 (169)
204 3k53_A Ferrous iron transport 93.9 0.22 7.4E-06 48.0 9.6 89 284-380 48-145 (271)
205 1via_A Shikimate kinase; struc 93.9 0.028 9.5E-07 50.3 2.9 35 177-217 3-37 (175)
206 2hup_A RAS-related protein RAB 93.8 0.46 1.6E-05 43.1 11.2 86 285-375 77-166 (201)
207 2zts_A Putative uncharacterize 93.8 0.059 2E-06 50.8 5.2 38 179-217 31-69 (251)
208 3a1s_A Iron(II) transport prot 93.8 0.37 1.3E-05 46.2 10.9 89 284-380 50-146 (258)
209 4dhe_A Probable GTP-binding pr 93.8 0.2 6.7E-06 46.2 8.7 67 284-352 77-157 (223)
210 2r6a_A DNAB helicase, replicat 93.8 0.069 2.4E-06 55.8 6.2 40 178-218 203-243 (454)
211 2hjg_A GTP-binding protein ENG 93.8 0.089 3E-06 54.7 6.9 67 284-352 49-124 (436)
212 3trf_A Shikimate kinase, SK; a 93.7 0.036 1.2E-06 49.9 3.4 35 177-217 4-38 (185)
213 2xtp_A GTPase IMAP family memb 93.7 0.21 7.3E-06 47.5 9.1 21 179-200 23-43 (260)
214 2z0h_A DTMP kinase, thymidylat 93.7 0.08 2.7E-06 47.9 5.7 35 180-215 2-36 (197)
215 3sjy_A Translation initiation 93.6 0.18 6.3E-06 51.7 8.9 67 286-352 75-142 (403)
216 3cmw_A Protein RECA, recombina 93.6 0.083 2.8E-06 63.4 6.9 41 178-219 383-423 (1706)
217 1mky_A Probable GTP-binding pr 93.5 0.31 1E-05 50.6 10.5 65 284-350 47-121 (439)
218 2q6t_A DNAB replication FORK h 93.5 0.07 2.4E-06 55.6 5.6 39 178-217 200-239 (444)
219 1c1y_A RAS-related protein RAP 93.4 0.71 2.4E-05 39.8 11.4 68 284-352 49-121 (167)
220 3bos_A Putative DNA replicatio 93.4 0.098 3.3E-06 48.7 6.0 38 179-217 53-90 (242)
221 2gf0_A GTP-binding protein DI- 93.4 0.28 9.7E-06 44.0 8.9 68 284-352 54-127 (199)
222 1q57_A DNA primase/helicase; d 93.3 0.052 1.8E-06 57.6 4.2 40 178-218 242-282 (503)
223 2r2a_A Uncharacterized protein 93.3 0.05 1.7E-06 50.2 3.6 40 176-216 3-48 (199)
224 2orw_A Thymidine kinase; TMTK, 93.3 0.077 2.6E-06 48.2 4.8 36 179-215 4-39 (184)
225 2kjq_A DNAA-related protein; s 93.2 0.075 2.6E-06 46.5 4.5 38 178-216 36-73 (149)
226 1g7s_A Translation initiation 93.2 0.56 1.9E-05 50.6 12.2 67 285-352 69-135 (594)
227 1nn5_A Similar to deoxythymidy 93.2 0.1 3.6E-06 47.9 5.7 36 178-214 9-44 (215)
228 3lxw_A GTPase IMAP family memb 93.2 0.79 2.7E-05 43.4 12.1 67 284-352 68-152 (247)
229 3c8u_A Fructokinase; YP_612366 93.2 0.12 4.2E-06 47.6 6.1 40 178-218 22-61 (208)
230 2plr_A DTMP kinase, probable t 93.1 0.089 3E-06 48.2 5.1 34 179-214 5-38 (213)
231 1e6c_A Shikimate kinase; phosp 93.1 0.053 1.8E-06 48.1 3.4 35 177-217 1-35 (173)
232 2iyv_A Shikimate kinase, SK; t 93.1 0.034 1.2E-06 50.1 2.2 35 177-217 1-35 (184)
233 4dkx_A RAS-related protein RAB 93.1 0.94 3.2E-05 42.0 12.1 88 284-376 60-151 (216)
234 1wms_A RAB-9, RAB9, RAS-relate 93.0 1 3.5E-05 39.3 11.9 67 285-352 55-129 (177)
235 2ged_A SR-beta, signal recogni 93.0 0.34 1.2E-05 43.4 8.8 69 284-353 89-170 (193)
236 2j69_A Bacterial dynamin-like 93.0 0.29 1E-05 54.0 9.7 65 286-352 174-243 (695)
237 3avx_A Elongation factor TS, e 93.0 0.16 5.6E-06 58.6 7.8 69 284-352 357-425 (1289)
238 1ly1_A Polynucleotide kinase; 92.9 0.087 3E-06 46.9 4.5 35 178-217 2-36 (181)
239 3cb4_D GTP-binding protein LEP 92.9 0.17 5.8E-06 54.7 7.5 85 284-375 69-153 (599)
240 3cmu_A Protein RECA, recombina 92.9 0.12 4.2E-06 62.8 7.0 41 178-219 383-423 (2050)
241 1vg8_A RAS-related protein RAB 92.9 0.26 9E-06 44.6 7.8 68 284-352 55-130 (207)
242 3llu_A RAS-related GTP-binding 92.8 0.92 3.1E-05 40.8 11.5 67 284-351 67-141 (196)
243 1n0u_A EF-2, elongation factor 92.8 0.27 9.3E-06 55.5 9.4 68 284-352 96-163 (842)
244 2wwf_A Thymidilate kinase, put 92.8 0.13 4.3E-06 47.3 5.6 36 178-214 10-45 (212)
245 1jjv_A Dephospho-COA kinase; P 92.8 0.073 2.5E-06 48.8 4.0 34 177-217 1-34 (206)
246 2z43_A DNA repair and recombin 92.8 0.068 2.3E-06 53.2 4.0 40 178-218 107-152 (324)
247 3q3j_B RHO-related GTP-binding 92.7 1.3 4.6E-05 40.5 12.6 68 284-352 73-144 (214)
248 1m8p_A Sulfate adenylyltransfe 92.7 0.099 3.4E-06 56.3 5.3 41 176-217 394-435 (573)
249 1zo1_I IF2, translation initia 92.6 0.25 8.7E-06 52.1 8.2 68 284-352 49-116 (501)
250 3ihw_A Centg3; RAS, centaurin, 92.6 1.4 4.9E-05 39.2 12.3 82 285-374 66-152 (184)
251 3cbq_A GTP-binding protein REM 92.6 0.89 3.1E-05 41.0 11.1 67 285-352 71-143 (195)
252 3tqc_A Pantothenate kinase; bi 92.5 0.13 4.5E-06 51.1 5.6 42 177-219 91-134 (321)
253 2if2_A Dephospho-COA kinase; a 92.5 0.058 2E-06 49.4 2.9 33 178-217 1-33 (204)
254 2ze6_A Isopentenyl transferase 92.5 0.096 3.3E-06 50.1 4.4 34 178-217 1-34 (253)
255 1kk1_A EIF2gamma; initiation o 92.5 0.3 1E-05 50.2 8.4 67 286-352 83-150 (410)
256 1x6v_B Bifunctional 3'-phospho 92.5 0.11 3.7E-06 56.4 5.3 42 177-219 51-92 (630)
257 2axn_A 6-phosphofructo-2-kinas 92.4 0.13 4.5E-06 54.7 5.8 41 176-217 33-73 (520)
258 1v5w_A DMC1, meiotic recombina 92.4 0.11 3.9E-06 52.0 5.0 39 178-217 122-166 (343)
259 2atx_A Small GTP binding prote 92.4 0.86 2.9E-05 40.7 10.6 67 285-352 65-135 (194)
260 1qf9_A UMP/CMP kinase, protein 92.3 0.097 3.3E-06 47.1 4.1 35 176-216 4-38 (194)
261 2qgz_A Helicase loader, putati 92.3 0.15 5.2E-06 50.3 5.7 38 178-216 152-190 (308)
262 1nlf_A Regulatory protein REPA 92.2 0.14 4.6E-06 49.7 5.2 39 178-217 30-78 (279)
263 3crm_A TRNA delta(2)-isopenten 92.2 0.1 3.5E-06 51.8 4.4 37 176-218 3-39 (323)
264 1sq5_A Pantothenate kinase; P- 92.2 0.13 4.6E-06 50.6 5.3 42 177-219 79-122 (308)
265 3d3q_A TRNA delta(2)-isopenten 92.2 0.12 4E-06 51.8 4.7 34 179-218 8-41 (340)
266 3reg_A RHO-like small GTPase; 92.1 0.85 2.9E-05 40.8 10.2 90 284-376 69-162 (194)
267 3dpu_A RAB family protein; roc 92.0 0.37 1.3E-05 51.4 8.7 66 284-352 96-163 (535)
268 1n0w_A DNA repair protein RAD5 92.0 0.12 3.9E-06 48.6 4.3 39 178-217 24-68 (243)
269 2v54_A DTMP kinase, thymidylat 91.9 0.11 3.7E-06 47.4 3.9 35 178-215 4-38 (204)
270 1ukz_A Uridylate kinase; trans 91.9 0.11 3.9E-06 47.4 4.0 36 175-216 12-47 (203)
271 3mca_A HBS1, elongation factor 91.9 0.048 1.6E-06 59.1 1.7 69 284-352 253-328 (592)
272 1gtv_A TMK, thymidylate kinase 91.9 0.059 2E-06 49.6 2.0 35 180-215 2-36 (214)
273 1zuh_A Shikimate kinase; alpha 91.9 0.095 3.2E-06 46.3 3.4 34 178-217 7-40 (168)
274 1uf9_A TT1252 protein; P-loop, 91.9 0.076 2.6E-06 48.3 2.8 36 175-217 5-40 (203)
275 3e2i_A Thymidine kinase; Zn-bi 91.9 0.4 1.4E-05 44.6 7.6 38 177-215 27-64 (219)
276 1jbk_A CLPB protein; beta barr 91.8 0.2 6.8E-06 44.5 5.5 36 179-215 44-86 (195)
277 1odf_A YGR205W, hypothetical 3 91.8 0.11 3.9E-06 50.8 4.1 40 178-218 31-73 (290)
278 3kb2_A SPBC2 prophage-derived 91.8 0.11 3.9E-06 45.7 3.8 34 178-217 1-34 (173)
279 3vaa_A Shikimate kinase, SK; s 91.7 0.1 3.5E-06 47.7 3.5 34 178-217 25-58 (199)
280 1svi_A GTP-binding protein YSX 91.6 0.68 2.3E-05 41.3 8.9 40 311-352 107-147 (195)
281 1wb1_A Translation elongation 91.6 0.38 1.3E-05 50.6 8.1 67 284-351 71-137 (482)
282 3asz_A Uridine kinase; cytidin 91.6 0.17 6E-06 46.4 4.9 38 178-219 6-43 (211)
283 2rhm_A Putative kinase; P-loop 91.5 0.12 4.2E-06 46.5 3.8 34 178-217 5-38 (193)
284 2bwj_A Adenylate kinase 5; pho 91.4 0.085 2.9E-06 47.9 2.5 34 178-217 12-45 (199)
285 1knq_A Gluconate kinase; ALFA/ 91.4 0.22 7.4E-06 44.2 5.2 34 178-217 8-41 (175)
286 1jwy_B Dynamin A GTPase domain 91.3 0.69 2.4E-05 45.2 9.3 68 284-352 129-211 (315)
287 4edh_A DTMP kinase, thymidylat 91.3 0.25 8.5E-06 46.0 5.7 36 178-214 6-41 (213)
288 2qt1_A Nicotinamide riboside k 91.3 0.11 3.7E-06 47.7 3.2 37 177-218 20-56 (207)
289 1mh1_A RAC1; GTP-binding, GTPa 91.2 0.55 1.9E-05 41.4 7.8 67 285-352 52-122 (186)
290 4djt_A GTP-binding nuclear pro 91.2 0.37 1.3E-05 44.1 6.8 66 286-352 61-130 (218)
291 1nrj_B SR-beta, signal recogni 91.1 0.24 8.2E-06 45.5 5.4 23 178-201 12-34 (218)
292 3t34_A Dynamin-related protein 91.1 1.3 4.6E-05 44.3 11.3 67 285-352 135-216 (360)
293 4dcu_A GTP-binding protein ENG 91.1 0.63 2.2E-05 48.5 9.2 69 284-353 241-320 (456)
294 1kag_A SKI, shikimate kinase I 91.0 0.11 3.8E-06 46.0 2.9 35 177-217 3-37 (173)
295 4hlc_A DTMP kinase, thymidylat 90.9 0.22 7.5E-06 46.1 4.9 36 177-214 1-36 (205)
296 3ake_A Cytidylate kinase; CMP 90.9 0.11 3.9E-06 47.3 2.9 33 179-217 3-35 (208)
297 2cdn_A Adenylate kinase; phosp 90.9 0.17 5.7E-06 46.2 4.0 36 175-216 17-52 (201)
298 1g8f_A Sulfate adenylyltransfe 90.8 0.16 5.6E-06 53.7 4.4 40 177-217 394-435 (511)
299 1m7b_A RND3/RHOE small GTP-bin 90.8 1.7 5.9E-05 38.4 10.7 68 284-352 53-124 (184)
300 3izy_P Translation initiation 90.8 0.21 7.2E-06 53.2 5.1 67 285-352 51-117 (537)
301 2p65_A Hypothetical protein PF 90.7 0.22 7.4E-06 44.1 4.6 26 179-205 44-69 (187)
302 3bwd_D RAC-like GTP-binding pr 90.7 0.68 2.3E-05 40.7 7.9 67 285-352 55-125 (182)
303 4gzl_A RAS-related C3 botulinu 90.6 0.53 1.8E-05 42.8 7.3 68 284-352 76-147 (204)
304 1s0u_A EIF-2-gamma, translatio 90.6 0.83 2.8E-05 46.8 9.5 67 286-352 81-148 (408)
305 3ld9_A DTMP kinase, thymidylat 90.5 0.26 8.8E-06 46.3 5.0 41 177-218 20-61 (223)
306 2orv_A Thymidine kinase; TP4A 90.5 0.34 1.1E-05 45.6 5.7 40 175-215 16-55 (234)
307 2p5t_B PEZT; postsegregational 90.5 0.16 5.4E-06 48.5 3.6 38 178-219 32-69 (253)
308 3gj0_A GTP-binding nuclear pro 90.4 0.38 1.3E-05 44.3 6.1 69 284-353 62-133 (221)
309 2f6r_A COA synthase, bifunctio 90.4 0.2 7E-06 48.6 4.4 36 175-217 72-107 (281)
310 3r7w_A Gtpase1, GTP-binding pr 90.4 0.37 1.3E-05 47.3 6.3 68 284-352 50-128 (307)
311 1y63_A LMAJ004144AAA protein; 90.3 0.22 7.4E-06 44.9 4.2 35 178-217 10-44 (184)
312 2ehv_A Hypothetical protein PH 90.2 0.3 1E-05 45.8 5.3 39 178-217 30-69 (251)
313 2qu8_A Putative nucleolar GTP- 90.2 1.8 6.2E-05 39.9 10.7 68 284-352 74-155 (228)
314 2grj_A Dephospho-COA kinase; T 90.1 0.23 7.8E-06 45.4 4.1 34 179-218 13-46 (192)
315 3lw7_A Adenylate kinase relate 90.0 0.17 5.9E-06 44.3 3.2 27 180-211 3-29 (179)
316 2i1q_A DNA repair and recombin 90.0 0.19 6.4E-06 49.8 3.8 40 178-218 98-153 (322)
317 1gwn_A RHO-related GTP-binding 89.9 2.1 7.2E-05 38.9 10.7 69 284-352 74-145 (205)
318 4eun_A Thermoresistant glucoki 89.9 0.29 9.8E-06 44.7 4.7 34 178-217 29-62 (200)
319 3jvv_A Twitching mobility prot 89.8 2.3 7.8E-05 42.7 11.7 36 178-214 123-159 (356)
320 3be4_A Adenylate kinase; malar 89.7 0.19 6.5E-06 46.6 3.3 33 178-216 5-37 (217)
321 2jeo_A Uridine-cytidine kinase 89.6 0.34 1.1E-05 45.8 5.1 39 178-217 25-68 (245)
322 2g3y_A GTP-binding protein GEM 89.5 2.6 8.9E-05 38.7 11.0 67 285-352 86-158 (211)
323 2pt5_A Shikimate kinase, SK; a 89.2 0.19 6.7E-06 44.1 2.9 32 180-217 2-33 (168)
324 1ak2_A Adenylate kinase isoenz 89.2 0.27 9.3E-06 46.1 4.1 37 174-216 12-48 (233)
325 2vhj_A Ntpase P4, P4; non- hyd 89.2 0.15 5E-06 50.7 2.2 34 179-216 124-157 (331)
326 1zun_B Sulfate adenylate trans 89.1 0.7 2.4E-05 47.8 7.5 69 284-352 102-170 (434)
327 1gvn_B Zeta; postsegregational 89.1 0.23 7.9E-06 48.4 3.6 37 180-219 34-70 (287)
328 3def_A T7I23.11 protein; chlor 89.0 0.47 1.6E-05 45.4 5.7 21 179-200 37-57 (262)
329 4eaq_A DTMP kinase, thymidylat 89.0 0.38 1.3E-05 45.2 4.9 35 177-213 25-59 (229)
330 3cmw_A Protein RECA, recombina 89.0 0.34 1.2E-05 58.2 5.5 40 178-218 732-771 (1706)
331 1aky_A Adenylate kinase; ATP:A 88.9 0.29 9.8E-06 45.3 4.0 33 178-216 4-36 (220)
332 2ewv_A Twitching motility prot 88.9 2.9 9.8E-05 42.2 11.7 38 177-215 135-173 (372)
333 1zp6_A Hypothetical protein AT 88.9 0.28 9.5E-06 44.1 3.8 35 178-216 9-43 (191)
334 4tmk_A Protein (thymidylate ki 88.8 0.47 1.6E-05 44.1 5.3 35 178-213 3-38 (213)
335 3iij_A Coilin-interacting nucl 88.8 0.29 9.9E-06 43.6 3.8 32 179-216 12-43 (180)
336 3hjn_A DTMP kinase, thymidylat 88.6 0.51 1.8E-05 43.2 5.4 33 181-214 3-35 (197)
337 2c95_A Adenylate kinase 1; tra 88.6 0.29 1E-05 44.0 3.7 34 178-217 9-42 (196)
338 1l8q_A Chromosomal replication 88.5 0.47 1.6E-05 46.8 5.5 36 180-216 39-74 (324)
339 1tev_A UMP-CMP kinase; ploop, 88.3 0.34 1.2E-05 43.4 3.9 32 179-216 4-35 (196)
340 3cm0_A Adenylate kinase; ATP-b 88.3 0.36 1.2E-05 43.1 4.1 33 178-216 4-36 (186)
341 3e1s_A Exodeoxyribonuclease V, 88.0 0.48 1.6E-05 51.0 5.5 35 179-214 205-239 (574)
342 2qby_B CDC6 homolog 3, cell di 88.0 0.43 1.5E-05 47.9 4.9 37 179-216 46-90 (384)
343 3v9p_A DTMP kinase, thymidylat 87.9 0.42 1.4E-05 44.9 4.3 36 178-214 25-64 (227)
344 3a8t_A Adenylate isopentenyltr 87.8 1.6 5.4E-05 43.5 8.7 35 178-218 40-74 (339)
345 1f60_A Elongation factor EEF1A 87.8 1.4 4.7E-05 45.9 8.7 69 284-352 83-158 (458)
346 4fcw_A Chaperone protein CLPB; 87.8 0.59 2E-05 45.5 5.6 39 179-218 48-86 (311)
347 2vli_A Antibiotic resistance p 87.7 0.2 6.9E-06 44.6 2.0 30 178-211 5-34 (183)
348 3n70_A Transport activator; si 87.6 0.26 8.7E-06 42.6 2.5 35 181-217 27-61 (145)
349 3lv8_A DTMP kinase, thymidylat 87.6 0.51 1.8E-05 44.6 4.8 35 178-213 27-62 (236)
350 4a74_A DNA repair and recombin 87.6 0.45 1.5E-05 43.9 4.4 39 178-217 25-69 (231)
351 1ltq_A Polynucleotide kinase; 87.5 0.37 1.3E-05 46.9 3.9 35 178-217 2-36 (301)
352 1cke_A CK, MSSA, protein (cyti 87.3 0.43 1.5E-05 44.1 4.1 33 179-217 6-38 (227)
353 3aez_A Pantothenate kinase; tr 87.2 0.76 2.6E-05 45.3 6.0 40 178-218 90-131 (312)
354 3lda_A DNA repair protein RAD5 87.1 0.39 1.3E-05 49.2 3.9 39 178-217 178-222 (400)
355 3t15_A Ribulose bisphosphate c 87.0 0.49 1.7E-05 46.2 4.4 33 179-215 37-69 (293)
356 2hjg_A GTP-binding protein ENG 86.9 0.38 1.3E-05 49.9 3.8 45 307-353 255-300 (436)
357 3ch4_B Pmkase, phosphomevalona 86.9 0.5 1.7E-05 43.5 4.1 29 174-203 7-35 (202)
358 2bdt_A BH3686; alpha-beta prot 86.9 0.41 1.4E-05 43.0 3.6 36 177-217 1-36 (189)
359 2c5m_A CTP synthase; cytidine 86.9 0.82 2.8E-05 43.2 5.5 47 177-223 22-69 (294)
360 1w4r_A Thymidine kinase; type 86.9 0.85 2.9E-05 41.7 5.6 43 173-216 15-57 (195)
361 1zak_A Adenylate kinase; ATP:A 86.7 0.36 1.2E-05 44.7 3.1 25 178-203 5-29 (222)
362 2qby_A CDC6 homolog 1, cell di 86.6 0.48 1.6E-05 47.4 4.3 38 178-216 45-85 (386)
363 2bbw_A Adenylate kinase 4, AK4 86.6 0.47 1.6E-05 44.8 4.0 26 177-203 26-51 (246)
364 1pzn_A RAD51, DNA repair and r 86.6 0.51 1.7E-05 47.4 4.4 39 178-217 131-175 (349)
365 2a5y_B CED-4; apoptosis; HET: 86.5 0.42 1.4E-05 51.1 4.0 23 178-201 152-174 (549)
366 3do6_A Formate--tetrahydrofola 86.4 0.47 1.6E-05 48.9 4.0 43 177-222 42-87 (543)
367 3foz_A TRNA delta(2)-isopenten 86.4 0.87 3E-05 44.8 5.8 36 177-218 9-44 (316)
368 2jaq_A Deoxyguanosine kinase; 86.2 0.49 1.7E-05 42.7 3.8 24 180-204 2-25 (205)
369 1zd8_A GTP:AMP phosphotransfer 86.1 0.36 1.2E-05 45.0 2.8 33 178-216 7-39 (227)
370 2l6n_A Uncharacterized protein 86.1 0.46 1.6E-05 40.6 3.2 35 487-521 9-44 (132)
371 3cmu_A Protein RECA, recombina 86.1 0.59 2E-05 57.1 5.2 40 178-218 1427-1466(2050)
372 3syl_A Protein CBBX; photosynt 86.0 0.77 2.6E-05 44.6 5.3 35 179-214 68-106 (309)
373 3exa_A TRNA delta(2)-isopenten 85.9 0.6 2.1E-05 46.1 4.4 34 179-218 4-37 (322)
374 3upu_A ATP-dependent DNA helic 85.8 0.78 2.7E-05 47.8 5.5 34 181-214 47-81 (459)
375 3tlx_A Adenylate kinase 2; str 85.6 0.67 2.3E-05 43.8 4.5 33 178-216 29-61 (243)
376 1vht_A Dephospho-COA kinase; s 85.3 0.83 2.8E-05 42.0 4.9 33 178-217 4-36 (218)
377 4b3f_X DNA-binding protein smu 85.1 0.83 2.8E-05 49.8 5.5 35 181-215 207-241 (646)
378 2chg_A Replication factor C sm 84.9 0.43 1.5E-05 43.3 2.7 34 181-215 41-74 (226)
379 2vo1_A CTP synthase 1; pyrimid 84.8 1.8 6E-05 41.3 6.7 47 177-223 22-69 (295)
380 1e4v_A Adenylate kinase; trans 84.7 0.53 1.8E-05 43.3 3.2 31 180-216 2-32 (214)
381 1w78_A FOLC bifunctional prote 84.6 1.2 4E-05 45.9 6.1 34 177-213 48-81 (422)
382 1bif_A 6-phosphofructo-2-kinas 84.6 1 3.4E-05 47.1 5.6 39 178-217 39-77 (469)
383 1fnn_A CDC6P, cell division co 84.5 1 3.6E-05 45.0 5.6 37 180-217 46-83 (389)
384 2fu5_C RAS-related protein RAB 84.5 4.2 0.00014 35.5 9.1 86 285-375 56-145 (183)
385 2v1u_A Cell division control p 84.3 0.63 2.2E-05 46.5 3.8 38 179-217 45-88 (387)
386 1tf7_A KAIC; homohexamer, hexa 84.1 0.96 3.3E-05 48.0 5.3 38 178-216 281-318 (525)
387 3cr8_A Sulfate adenylyltranfer 83.9 0.67 2.3E-05 49.5 4.0 40 177-217 368-408 (552)
388 3umf_A Adenylate kinase; rossm 83.7 0.91 3.1E-05 42.3 4.3 27 176-203 27-53 (217)
389 1lnz_A SPO0B-associated GTP-bi 83.7 1.4 4.7E-05 44.1 5.9 65 286-351 206-286 (342)
390 1kgd_A CASK, peripheral plasma 83.6 0.64 2.2E-05 41.5 3.2 25 178-203 5-29 (180)
391 2e87_A Hypothetical protein PH 83.6 2 6.9E-05 43.0 7.2 66 285-351 213-292 (357)
392 2xb4_A Adenylate kinase; ATP-b 83.5 0.69 2.4E-05 42.9 3.5 31 180-216 2-32 (223)
393 3fb4_A Adenylate kinase; psych 83.3 0.79 2.7E-05 42.0 3.8 31 180-216 2-32 (216)
394 2bjv_A PSP operon transcriptio 83.2 0.72 2.5E-05 43.9 3.6 37 180-217 31-67 (265)
395 1jbw_A Folylpolyglutamate synt 83.0 1.3 4.5E-05 45.6 5.7 33 178-213 39-71 (428)
396 4e22_A Cytidylate kinase; P-lo 82.9 0.79 2.7E-05 43.5 3.7 27 176-203 25-51 (252)
397 3tau_A Guanylate kinase, GMP k 82.9 0.81 2.8E-05 42.0 3.6 26 177-203 7-32 (208)
398 3nva_A CTP synthase; rossman f 82.8 1.7 6E-05 45.6 6.4 46 177-222 2-48 (535)
399 3orf_A Dihydropteridine reduct 82.7 0.95 3.2E-05 42.8 4.1 42 172-218 16-57 (251)
400 3nrs_A Dihydrofolate:folylpoly 82.5 1.6 5.4E-05 45.1 6.1 35 176-213 50-84 (437)
401 2eyu_A Twitching motility prot 82.3 1.8 6E-05 41.4 5.9 38 178-216 25-63 (261)
402 1w5s_A Origin recognition comp 82.2 1 3.5E-05 45.5 4.5 33 185-217 58-96 (412)
403 4ag6_A VIRB4 ATPase, type IV s 82.1 1.4 4.7E-05 44.7 5.3 35 181-216 38-72 (392)
404 3eag_A UDP-N-acetylmuramate:L- 81.9 1.4 4.7E-05 43.7 5.1 33 177-212 107-139 (326)
405 2qor_A Guanylate kinase; phosp 81.8 0.67 2.3E-05 42.3 2.6 24 179-203 13-36 (204)
406 2z4s_A Chromosomal replication 81.6 1.1 3.9E-05 46.3 4.6 38 178-216 130-169 (440)
407 1w36_D RECD, exodeoxyribonucle 81.5 1.3 4.4E-05 48.0 5.1 33 181-213 166-202 (608)
408 2qz4_A Paraplegin; AAA+, SPG7, 81.5 1.9 6.4E-05 40.5 5.8 34 179-216 40-73 (262)
409 2i3b_A HCR-ntpase, human cance 81.3 1.1 3.8E-05 40.6 3.9 27 180-207 3-29 (189)
410 3izq_1 HBS1P, elongation facto 81.3 3 0.0001 45.1 7.9 69 284-352 243-318 (611)
411 3geh_A MNME, tRNA modification 81.2 2.2 7.4E-05 44.5 6.6 66 284-352 270-343 (462)
412 1e8c_A UDP-N-acetylmuramoylala 81.2 1.8 6.2E-05 45.5 6.0 35 177-214 107-141 (498)
413 3gee_A MNME, tRNA modification 80.9 1.7 6E-05 45.4 5.7 69 284-352 279-356 (476)
414 1ofh_A ATP-dependent HSL prote 80.9 1.5 5.1E-05 42.4 4.9 35 179-217 51-85 (310)
415 3dl0_A Adenylate kinase; phosp 80.8 0.88 3E-05 41.7 3.1 31 180-216 2-32 (216)
416 2j41_A Guanylate kinase; GMP, 80.8 1.1 3.6E-05 40.6 3.6 25 178-203 6-30 (207)
417 1nij_A Hypothetical protein YJ 80.5 0.97 3.3E-05 44.6 3.4 37 178-217 4-40 (318)
418 2wtz_A UDP-N-acetylmuramoyl-L- 80.1 2 7E-05 45.6 6.0 35 177-214 145-179 (535)
419 3tr0_A Guanylate kinase, GMP k 79.9 1.2 4E-05 40.3 3.6 25 178-203 7-31 (205)
420 3r20_A Cytidylate kinase; stru 79.9 1.3 4.4E-05 41.7 3.9 34 178-217 9-42 (233)
421 2vos_A Folylpolyglutamate synt 79.9 1.9 6.6E-05 45.2 5.7 34 177-213 63-96 (487)
422 1z6t_A APAF-1, apoptotic prote 79.9 1.1 3.8E-05 48.0 3.9 40 177-217 146-189 (591)
423 1njg_A DNA polymerase III subu 79.8 1.4 4.9E-05 40.2 4.2 27 179-206 46-72 (250)
424 3nwj_A ATSK2; P loop, shikimat 79.7 1.1 3.7E-05 42.7 3.4 34 178-217 48-81 (250)
425 1ye8_A Protein THEP1, hypothet 79.6 1.3 4.6E-05 39.6 3.8 24 180-204 2-25 (178)
426 1o5z_A Folylpolyglutamate synt 79.6 1.8 6.1E-05 44.8 5.3 34 177-213 51-84 (442)
427 2yc2_C IFT27, small RAB-relate 78.9 6.7 0.00023 34.8 8.4 85 285-374 72-164 (208)
428 1c9k_A COBU, adenosylcobinamid 78.9 1 3.6E-05 40.5 2.8 32 181-217 2-33 (180)
429 3sr0_A Adenylate kinase; phosp 78.7 1.4 4.9E-05 40.5 3.8 23 180-203 2-24 (206)
430 3ged_A Short-chain dehydrogena 77.9 1.5 5.2E-05 41.6 3.8 36 177-217 1-36 (247)
431 4i1u_A Dephospho-COA kinase; s 77.9 1.7 6E-05 40.1 4.1 33 178-217 9-41 (210)
432 2qmh_A HPR kinase/phosphorylas 77.6 1.4 4.9E-05 40.4 3.3 33 178-217 34-66 (205)
433 2gk6_A Regulator of nonsense t 77.5 2 7E-05 46.5 5.1 34 181-214 197-231 (624)
434 1lv7_A FTSH; alpha/beta domain 77.5 2.5 8.5E-05 39.8 5.2 31 180-214 47-77 (257)
435 2qtf_A Protein HFLX, GTP-bindi 77.4 5.1 0.00017 40.2 7.7 22 178-200 179-200 (364)
436 3q72_A GTP-binding protein RAD 77.4 9.4 0.00032 32.4 8.6 87 284-375 47-138 (166)
437 1q3t_A Cytidylate kinase; nucl 77.3 1.8 6.2E-05 40.3 4.1 34 178-217 16-49 (236)
438 1dek_A Deoxynucleoside monopho 77.3 1.6 5.4E-05 41.3 3.6 29 178-210 1-29 (241)
439 3tqf_A HPR(Ser) kinase; transf 77.2 2.2 7.5E-05 38.2 4.3 27 178-209 16-42 (181)
440 3a00_A Guanylate kinase, GMP k 77.2 1.1 3.9E-05 40.1 2.5 25 179-204 2-26 (186)
441 1d2n_A N-ethylmaleimide-sensit 76.9 2.5 8.6E-05 40.2 5.1 32 179-214 65-96 (272)
442 1um8_A ATP-dependent CLP prote 76.9 2 6.9E-05 43.1 4.6 35 179-217 73-107 (376)
443 1sxj_A Activator 1 95 kDa subu 76.7 1.9 6.5E-05 45.5 4.5 34 179-216 78-111 (516)
444 2vp4_A Deoxynucleoside kinase; 76.6 1.6 5.5E-05 40.6 3.5 36 176-216 18-53 (230)
445 4ehx_A Tetraacyldisaccharide 4 76.3 2.4 8.2E-05 41.8 4.8 37 179-217 37-74 (315)
446 3hdt_A Putative kinase; struct 76.2 2 6.8E-05 40.1 4.0 34 178-217 14-47 (223)
447 3lk7_A UDP-N-acetylmuramoylala 76.2 2.8 9.7E-05 43.4 5.6 32 178-212 112-143 (451)
448 3d8b_A Fidgetin-like protein 1 76.2 2.8 9.5E-05 41.9 5.3 35 177-215 116-150 (357)
449 2ocp_A DGK, deoxyguanosine kin 76.1 1.5 5E-05 41.1 3.1 26 178-204 2-27 (241)
450 1vt4_I APAF-1 related killer D 76.0 2.4 8.1E-05 48.7 5.1 39 178-217 150-191 (1221)
451 2f7s_A C25KG, RAS-related prot 75.9 8.4 0.00029 34.7 8.2 87 285-375 83-173 (217)
452 3b9p_A CG5977-PA, isoform A; A 75.8 2.9 9.9E-05 40.2 5.3 34 178-215 54-87 (297)
453 1lvg_A Guanylate kinase, GMP k 75.8 1.6 5.5E-05 39.6 3.2 26 178-204 4-29 (198)
454 1e9r_A Conjugal transfer prote 75.6 2.6 9E-05 43.2 5.2 35 181-216 56-90 (437)
455 3h4m_A Proteasome-activating n 75.6 2.8 9.5E-05 40.0 5.0 33 179-215 52-84 (285)
456 3l0i_B RAS-related protein RAB 75.5 4.9 0.00017 35.8 6.5 87 285-375 81-170 (199)
457 3ney_A 55 kDa erythrocyte memb 75.3 1.9 6.5E-05 39.4 3.5 24 179-203 20-43 (197)
458 2h92_A Cytidylate kinase; ross 75.2 1.1 3.8E-05 41.1 1.9 33 179-217 4-36 (219)
459 2pt7_A CAG-ALFA; ATPase, prote 75.2 9.7 0.00033 37.6 9.0 35 178-214 171-205 (330)
460 3dii_A Short-chain dehydrogena 75.2 2 6.8E-05 40.3 3.8 36 177-217 1-36 (247)
461 2wjy_A Regulator of nonsense t 74.9 2.6 8.9E-05 47.1 5.1 34 181-214 373-407 (800)
462 3zvl_A Bifunctional polynucleo 74.8 1.2 3.9E-05 45.9 2.1 34 178-217 258-291 (416)
463 2ehd_A Oxidoreductase, oxidore 74.7 1.8 6.2E-05 40.0 3.3 37 176-217 3-39 (234)
464 3te6_A Regulatory protein SIR3 74.7 3 0.0001 41.1 5.0 27 179-206 46-72 (318)
465 3sfz_A APAF-1, apoptotic pepti 74.2 2.1 7.3E-05 49.8 4.5 41 176-217 145-189 (1249)
466 2x5o_A UDP-N-acetylmuramoylala 74.2 3.2 0.00011 42.8 5.4 33 178-213 104-136 (439)
467 2npi_A Protein CLP1; CLP1-PCF1 74.1 1.5 5.1E-05 45.7 2.8 41 178-219 138-179 (460)
468 3fdi_A Uncharacterized protein 74.0 1.5 5.1E-05 40.1 2.4 33 179-217 7-39 (201)
469 1p5z_B DCK, deoxycytidine kina 73.9 0.82 2.8E-05 43.6 0.7 27 176-203 22-48 (263)
470 3r6d_A NAD-dependent epimerase 73.9 2.5 8.6E-05 38.6 4.0 37 176-217 3-40 (221)
471 1r5b_A Eukaryotic peptide chai 73.7 2.9 0.0001 43.5 4.9 69 284-352 119-194 (467)
472 1xwi_A SKD1 protein; VPS4B, AA 73.6 3.6 0.00012 40.5 5.3 34 179-215 46-79 (322)
473 1tue_A Replication protein E1; 73.1 2.1 7.1E-05 39.5 3.1 23 180-203 60-82 (212)
474 2fna_A Conserved hypothetical 73.0 3.3 0.00011 40.5 4.9 35 179-217 31-65 (357)
475 3guy_A Short-chain dehydrogena 72.6 2.1 7.4E-05 39.5 3.2 35 178-217 1-35 (230)
476 3ic5_A Putative saccharopine d 72.5 3 0.0001 33.5 3.8 35 177-217 4-39 (118)
477 3cf0_A Transitional endoplasmi 72.5 2.9 0.0001 40.6 4.4 32 179-214 50-81 (301)
478 3hws_A ATP-dependent CLP prote 72.1 3.2 0.00011 41.4 4.6 34 179-216 52-85 (363)
479 1p9r_A General secretion pathw 72.0 4 0.00014 41.9 5.4 40 177-217 166-205 (418)
480 1ojl_A Transcriptional regulat 71.8 1.7 5.9E-05 42.4 2.5 37 180-217 27-63 (304)
481 3eph_A TRNA isopentenyltransfe 71.7 3.8 0.00013 41.8 5.0 33 179-217 3-35 (409)
482 3eie_A Vacuolar protein sortin 71.5 4.8 0.00016 39.4 5.7 34 178-215 51-84 (322)
483 1sxj_C Activator 1 40 kDa subu 71.4 2 6.9E-05 42.5 2.9 36 181-217 49-84 (340)
484 2ekp_A 2-deoxy-D-gluconate 3-d 71.4 2.9 9.9E-05 38.9 3.9 35 178-217 2-36 (239)
485 3pxg_A Negative regulator of g 71.4 2.7 9.1E-05 43.8 4.0 25 180-205 203-227 (468)
486 1znw_A Guanylate kinase, GMP k 71.4 2.4 8.3E-05 38.5 3.3 26 178-204 20-45 (207)
487 1fjh_A 3alpha-hydroxysteroid d 71.0 3.1 0.0001 39.0 4.0 35 178-217 1-35 (257)
488 4gp7_A Metallophosphoesterase; 71.0 2.3 8E-05 37.5 3.0 20 178-198 9-28 (171)
489 1htw_A HI0065; nucleotide-bind 70.9 3.3 0.00011 36.2 3.9 25 178-203 33-57 (158)
490 1p3d_A UDP-N-acetylmuramate--a 70.8 4.9 0.00017 41.9 5.8 37 178-217 118-155 (475)
491 3p19_A BFPVVD8, putative blue 70.6 3.1 0.00011 39.6 3.9 36 177-217 15-50 (266)
492 3hn7_A UDP-N-acetylmuramate-L- 70.6 3.9 0.00013 43.3 5.1 34 177-213 121-154 (524)
493 1j6u_A UDP-N-acetylmuramate-al 70.6 3.7 0.00013 42.8 4.8 32 178-212 114-145 (469)
494 1z6g_A Guanylate kinase; struc 70.2 2.3 8E-05 39.2 2.9 25 178-203 23-47 (218)
495 2v9p_A Replication protein E1; 70.0 3.5 0.00012 40.4 4.2 29 178-210 126-154 (305)
496 1in4_A RUVB, holliday junction 69.7 2.9 9.8E-05 41.4 3.6 24 179-203 52-75 (334)
497 3rsc_A CALG2; TDP, enediyne, s 69.7 4.8 0.00017 40.5 5.4 40 174-215 17-56 (415)
498 2xzl_A ATP-dependent helicase 69.7 3.7 0.00013 45.9 4.8 34 181-214 377-411 (802)
499 3lnc_A Guanylate kinase, GMP k 69.3 1.9 6.5E-05 40.0 2.1 25 178-203 27-52 (231)
500 2f00_A UDP-N-acetylmuramate--L 69.2 5.5 0.00019 41.7 5.8 37 178-217 119-156 (491)
No 1
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=100.00 E-value=5.4e-32 Score=273.19 Aligned_cols=232 Identities=18% Similarity=0.160 Sum_probs=175.6
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc-cc----cc-----CCCCCceeec
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR-LL----EM-----NPEKRTIIPT 245 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~-~~----~~-----~~~~~~i~~~ 245 (532)
..+|||||+ |||||||||+|+|||.+||++|+||++||+|+|++++..+++.... .. .. ....+.+...
T Consensus 46 ~~aKVIAIa-GKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ 124 (314)
T 3fwy_A 46 TGAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFE 124 (314)
T ss_dssp -CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEE
T ss_pred CCceEEEEE-CCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccCCCCCcchhhHhhhccccccccHhHheee
Confidence 457899998 7999999999999999999999999999999999887655443211 10 00 0111122334
Q ss_pred ccCCcEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHH
Q 009574 246 EYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI 325 (532)
Q Consensus 246 ~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~ 325 (532)
...++.+++++....... +........+..+.+...++.||||++|||++.....+. +.+.++|.+++|++|+..++.
T Consensus 125 ~~~~i~~v~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~~~~-~al~aAd~viIvt~~e~~Al~ 202 (314)
T 3fwy_A 125 GFNGVMCVEAGGPPAGTG-CGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGFA-APLQHADQAVVVTANDFDSIY 202 (314)
T ss_dssp CGGGCEEEECCCCCTTCS-CTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGGG-GGGGTCSEEEEEECSSHHHHH
T ss_pred cCCCeEEEeCCCCcccch-hhhccHHHHHHHHHhcchhhcCceEeeccCCcchhhhhH-hHHhhCCeEEEEeCCcHHHHH
Confidence 456889998775433322 223334445555555445689999999999987655442 335678999999999999999
Q ss_pred HHHHHHHHHHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEeC
Q 009574 326 DVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 401 (532)
Q Consensus 326 ~~~~~i~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~ 401 (532)
++.++++.++.. +.++.|+|+|+... ....+++.+.++.++++.||.+..+++|...|+|+++++
T Consensus 203 ~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~-----------~~~v~~~a~~~~~~~lg~IP~d~~Vr~a~~~G~pvv~~~ 271 (314)
T 3fwy_A 203 AMNRIIAAVQAKSKNYKVRLAGCVANRSRA-----------TDEVDRFCKETNFRRLAHMPDLDAIRRSRLKKKTLFEMD 271 (314)
T ss_dssp HHHHHHHHHHTTTTTCCCEEEEEEEESCSC-----------CHHHHHHHHHHTCCEEEEECCCHHHHHHHHTTCCTTTSC
T ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCCCc-----------hhHHHHHHHHhCCeEEEEecCchHHHHHHHcCCceEEEC
Confidence 999988887754 45678999998432 235688899999999999999999999999999999999
Q ss_pred CCCHHHHH---HHHHHHHHHHHH
Q 009574 402 PCGEVANT---FQDLGVCVVQQC 421 (532)
Q Consensus 402 p~s~~a~~---~~~La~~i~~~~ 421 (532)
|+|+.+.+ |++||++|+++.
T Consensus 272 P~S~~a~aa~~Y~~LA~eil~~~ 294 (314)
T 3fwy_A 272 EDQDVLAARAEYIRLAESLWRGL 294 (314)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCChhhHHHHHHHHHHHHHHhCC
Confidence 99987666 999999998654
No 2
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=99.98 E-value=7.9e-32 Score=261.45 Aligned_cols=228 Identities=20% Similarity=0.289 Sum_probs=180.8
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc---cc----ccCCCCCceeecccCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---LL----EMNPEKRTIIPTEYLG 249 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~---~~----~~~~~~~~i~~~~~~~ 249 (532)
|+++|+|+|+|||+||||+|+|||..||++|+||++||+|++++++..++|.+.. +. ......+.+.+...+|
T Consensus 1 M~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 80 (237)
T 1g3q_A 1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDN 80 (237)
T ss_dssp CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSSTT
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcCCCCHHHHhhcCCCCC
Confidence 6799999999999999999999999999999999999999998888888887543 11 1111223344444589
Q ss_pred cEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 009574 250 VKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 329 (532)
Q Consensus 250 l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~ 329 (532)
++++|+.... ....+.. ...+.++++.+. +.||||||||||+.+...... +..+|.+++|+.|+..++.++.+
T Consensus 81 l~~lp~~~~~-~~~~~~~---~~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~--~~~ad~vi~v~~~~~~~~~~~~~ 153 (237)
T 1g3q_A 81 VYVLPGAVDW-EHVLKAD---PRKLPEVIKSLK-DKFDFILIDCPAGLQLDAMSA--MLSGEEALLVTNPEISCLTDTMK 153 (237)
T ss_dssp EEEECCCCSH-HHHHHCC---GGGHHHHHHTTG-GGCSEEEEECCSSSSHHHHHH--HTTCSEEEEEECSCHHHHHHHHH
T ss_pred EEEEeCCCcc-chhhhcC---HHHHHHHHHHHH-hcCCEEEEECCCCcCHHHHHH--HHHCCeEEEEecCCcccHHHHHH
Confidence 9999943221 1111110 123556666655 789999999999988654443 56789999999999999999999
Q ss_pred HHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEeCCCCHHHHH
Q 009574 330 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANT 409 (532)
Q Consensus 330 ~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~s~~a~~ 409 (532)
.++.+++.+.+..|+|+|++...... ...+++.+.+|.++++.||++..+.++...|+|+.++.|+++++++
T Consensus 154 ~~~~l~~~~~~~~~vv~N~~~~~~~~--------~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~~~~~~~~~ 225 (237)
T 1g3q_A 154 VGIVLKKAGLAILGFVLNRYGRSDRD--------IPPEAAEDVMEVPLLAVIPEDPAIREGTLEGIPAVKYKPESKGAKA 225 (237)
T ss_dssp HHHHHHHTTCEEEEEEEEEETSCTTC--------CCHHHHHHHHCSCEEEEEECCHHHHHHHHHTSCHHHHSTTSHHHHH
T ss_pred HHHHHHhCCCceEEEEEecCCcccch--------hHHHHHHHHhCccceeeCCCChHHHHHHHcCCCeEEeCCCCHHHHH
Confidence 99999988888999999997543221 3467888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 009574 410 FQDLGVCVVQ 419 (532)
Q Consensus 410 ~~~La~~i~~ 419 (532)
|++|+++|.+
T Consensus 226 ~~~la~~l~~ 235 (237)
T 1g3q_A 226 FVKLAEEIEK 235 (237)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 3
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=99.97 E-value=3.3e-32 Score=265.33 Aligned_cols=228 Identities=17% Similarity=0.236 Sum_probs=177.3
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHC-CCcEEEEEcCCCCCCCCCCCC-Cccc--ccc----cCCCC----Ccee
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVS-PENR--LLE----MNPEK----RTII 243 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~-G~rVllID~D~~~~s~~~~lg-~~~~--~~~----~~~~~----~~i~ 243 (532)
+++++|+|+|+||||||||+|+|||..||++ |+||++||+|++.+++..+++ .... +.+ ..... ..+.
T Consensus 2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 81 (245)
T 3ea0_A 2 NAKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTMV 81 (245)
T ss_dssp -CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHHS
T ss_pred CCCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHHh
Confidence 5789999999999999999999999999998 999999999999778888874 2221 111 00001 1233
Q ss_pred ecccCCcEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch
Q 009574 244 PTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 323 (532)
Q Consensus 244 ~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s 323 (532)
....+|++++|++........+. ...+.++++.+. +.||||||||||+.+...... +..+|.+++|+.|+..+
T Consensus 82 ~~~~~~l~~l~~~~~~~~~~~~~----~~~l~~~l~~l~-~~yD~viiD~p~~~~~~~~~~--l~~ad~viiv~~~~~~~ 154 (245)
T 3ea0_A 82 QHISPSLDLIPSPATFEKIVNIE----PERVSDLIHIAA-SFYDYIIVDFGASIDHVGVWV--LEHLDELCIVTTPSLQS 154 (245)
T ss_dssp EEEETTEEEECCCSSHHHHHHCC----HHHHHHHHHHHH-HHCSEEEEEEESSCCTTHHHH--GGGCSEEEEEECSSHHH
T ss_pred EecCCCeEEEcCCCChHhhhcCC----HHHHHHHHHHHH-hhCCEEEEeCCCCCchHHHHH--HHHCCEEEEEecCcHHH
Confidence 44568999999765433222222 234566665554 689999999999987655444 55789999999999999
Q ss_pred HHHHHHHHHHHHcCC--CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCch-hhhhcccCCCceEEe
Q 009574 324 FIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP-TLSASGDSGMPEVAA 400 (532)
Q Consensus 324 ~~~~~~~i~~l~~~~--~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~-~i~~a~~~g~pv~~~ 400 (532)
+..+.++++.+++.+ ...+++|+||+..... ...+++++.+|.+++..||++. .+.++...|+|+.++
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~---------~~~~~~~~~~~~~v~~~ip~~~~~~~~a~~~g~~v~~~ 225 (245)
T 3ea0_A 155 LRRAGQLLKLCKEFEKPISRIEIILNRADTNSR---------ITSDEIEKVIGRPISKRIPQDEDAMQESLLSGQSVLKV 225 (245)
T ss_dssp HHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTT---------SCHHHHHHHHTSCEEEEECCCHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHhCCCccceEEEEecCCCCCC---------CCHHHHHHHhCCCeEEECCCChHHHHHHHHcCCCcccc
Confidence 999999999999887 5679999999654321 1247888899999999999996 899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 009574 401 DPCGEVANTFQDLGVCVVQ 419 (532)
Q Consensus 401 ~p~s~~a~~~~~La~~i~~ 419 (532)
.|+++++++|++|+++|+.
T Consensus 226 ~~~s~~~~~~~~la~~l~g 244 (245)
T 3ea0_A 226 APKSQLSKTIVDWALHLNG 244 (245)
T ss_dssp CTTSHHHHHHHHHHHCC--
T ss_pred CCCCHHHHHHHHHHHHHhC
Confidence 9999999999999998764
No 4
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=99.97 E-value=1.5e-31 Score=263.01 Aligned_cols=230 Identities=17% Similarity=0.215 Sum_probs=178.1
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccc--------cccCCCCCceee-ccc
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL--------LEMNPEKRTIIP-TEY 247 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~--------~~~~~~~~~i~~-~~~ 247 (532)
|+++|+|+|+||||||||+|+|||.+||++|+||++||+|++.+++..++|.+... .......+.+.. ...
T Consensus 1 M~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 80 (260)
T 3q9l_A 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRT 80 (260)
T ss_dssp -CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCCC
Confidence 67999999999999999999999999999999999999999888888888876431 011111122222 245
Q ss_pred CCcEEEecCCCCCcccccCCchHHHHHHHHHHhcccC-CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHH
Q 009574 248 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWG-ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFID 326 (532)
Q Consensus 248 ~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~ 326 (532)
+|++++|++.... ...+. ...+.++++.+. . .||||||||||+.+...... +..+|.+++|+.|+..++..
T Consensus 81 ~~l~~lp~~~~~~-~~~~~----~~~~~~~l~~l~-~~~yD~viiD~p~~~~~~~~~~--l~~ad~vi~v~~~~~~s~~~ 152 (260)
T 3q9l_A 81 ENLYILPASQTRD-KDALT----REGVAKVLDDLK-AMDFEFIVCDSPAGIETGALMA--LYFADEAIITTNPEVSSVRD 152 (260)
T ss_dssp TTEEEECCCSCCC-TTSSC----HHHHHHHHHHHH-HTTCSEEEEECCSSSSHHHHHH--HHTCSEEEEEECSSHHHHHH
T ss_pred CCEEEecCCCccc-hhhCC----HHHHHHHHHHHh-ccCCCEEEEcCCCCCCHHHHHH--HHhCCEEEEEecCChhHHHH
Confidence 7999999775432 12222 234555555554 5 89999999999988654443 56789999999999999999
Q ss_pred HHHHHHHHHcCCC--------CEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceE
Q 009574 327 VAKGVRMFSKLKV--------PCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEV 398 (532)
Q Consensus 327 ~~~~i~~l~~~~~--------~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~ 398 (532)
+.++++.++..+. ...++|+||+........ .....+++.+.+|.++++.||++..+.++...|+|+.
T Consensus 153 ~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~ 228 (260)
T 3q9l_A 153 SDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRG----DMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVI 228 (260)
T ss_dssp HHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHTT----SSCCHHHHHHHHCSEEEEEEECCHHHHHHHHHTCCGG
T ss_pred HHHHHHHHHHhccccccccCCcceEEEEecCCccccccc----cccCHHHHHHHhCCceEEecCCChhHHHHHHcCCCeE
Confidence 9999999987652 478999999764321100 0112478889999999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHHHHH
Q 009574 399 AADPCGEVANTFQDLGVCVVQ 419 (532)
Q Consensus 399 ~~~p~s~~a~~~~~La~~i~~ 419 (532)
+ .|+++++++|++++++|++
T Consensus 229 ~-~~~s~~~~~~~~la~~l~~ 248 (260)
T 3q9l_A 229 L-DINADAGKAYADTVERLLG 248 (260)
T ss_dssp G-CTTCHHHHHHHHHHHHHTT
T ss_pred E-CCCCHHHHHHHHHHHHHhc
Confidence 9 9999999999999999874
No 5
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=99.97 E-value=1.5e-30 Score=256.85 Aligned_cols=226 Identities=39% Similarity=0.632 Sum_probs=174.9
Q ss_pred ccccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeec--ccCC
Q 009574 172 EGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPT--EYLG 249 (532)
Q Consensus 172 ~~~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~--~~~~ 249 (532)
+.+.+|+++|+|+|+||||||||+|+|||.+||++|+||++||+|+|++++..++|....... .....+.+. ..+|
T Consensus 12 ~~l~~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~~~--~~~~~~~~~~~~~~~ 89 (262)
T 2ph1_A 12 ERLGKIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARIA--VSAEGLEPVLTQKYG 89 (262)
T ss_dssp HHHTTCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCCCE--EETTEEECEECTTTC
T ss_pred hhhccCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCcccc--ccccCccccccCCCC
Confidence 467788999999999999999999999999999999999999999999888888876543110 011222222 4578
Q ss_pred cEEEecCCCCCc---ccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHH
Q 009574 250 VKLVSFGFSGQG---RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFID 326 (532)
Q Consensus 250 l~vl~~~~~~~~---~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~ 326 (532)
++++|++..... ...+.++.....++++++.+.++.||||||||||+.+........+..+|.+++|+.|+..++.+
T Consensus 90 l~vlp~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~ 169 (262)
T 2ph1_A 90 IKVMSMQFLLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVI 169 (262)
T ss_dssp CEEECGGGGSTTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHH
T ss_pred eEEEeccccCCCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHH
Confidence 999997653321 11233445566788888776557899999999999987554444344689999999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEEEecccccCC--CccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEE
Q 009574 327 VAKGVRMFSKLKVPCIAVVENMCHFDAD--GKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVA 399 (532)
Q Consensus 327 ~~~~i~~l~~~~~~~~gvV~N~~~~~~~--~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~ 399 (532)
+.+.++.+++.+.+++|+|+||++.... ......+.....+++.+.+|.++++.||++..+.+|...|+|++.
T Consensus 170 ~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~~~~ 244 (262)
T 2ph1_A 170 VEKAINMAEETNTSVLGLVENMSYFVCPNCGHKSYIFGEGKGESLAKKYNIGFFTSIPIEEELIKLADSGRIEEY 244 (262)
T ss_dssp HHHHHHHHHTTTCCEEEEEETTCCEECTTTCCEECTTCCCCHHHHHHHTTCSEEEECCBCHHHHHHHHTTCGGGC
T ss_pred HHHHHHHHHhCCCCEEEEEECCCccCCcccccccccccccHHHHHHHHcCCCeEEEeeCchHHHHhccCCceeec
Confidence 9999999999999999999999764321 111112234568899999999999999999999999999999864
No 6
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=99.97 E-value=6.7e-31 Score=259.19 Aligned_cols=228 Identities=23% Similarity=0.273 Sum_probs=177.2
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc---cc----ccCCCCCceeecccCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---LL----EMNPEKRTIIPTEYLG 249 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~---~~----~~~~~~~~i~~~~~~~ 249 (532)
|+++|+|+|+||||||||+|+|||.+||++|+||++||+|++.+++..++|.+.. +. ......+.+.+ ..+|
T Consensus 1 M~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~~~l~~~l~~~~~~~~~i~~-~~~~ 79 (263)
T 1hyq_A 1 MVRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYV-GPGG 79 (263)
T ss_dssp -CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEE-CGGG
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCCCCCCHHHHHcCCCcHHHhhee-CCCC
Confidence 5799999999999999999999999999999999999999988888888876543 11 11111223333 2478
Q ss_pred cEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 009574 250 VKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 329 (532)
Q Consensus 250 l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~ 329 (532)
++++|+........... ...+.++++.+. ..||||||||||+.+...... +..+|.+++|+.|+..++.++.+
T Consensus 80 l~~lp~~~~~~~~~~~~----~~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~--~~~ad~vi~v~~~~~~~~~~~~~ 152 (263)
T 1hyq_A 80 VKVVPAGVSLEGLRKAN----PEKLEDVLTQIM-ESTDILLLDAPAGLERSAVIA--IAAAQELLLVVNPEISSITDGLK 152 (263)
T ss_dssp CEEEECCSCHHHHHHHC----HHHHHHHHHHHH-HTCSEEEEECCSSSSHHHHHH--HHHSSEEEEEECSSHHHHHHHHH
T ss_pred eEEEcCCCCcChhhccC----hHHHHHHHHHHH-hhCCEEEEeCCCCCChHHHHH--HHHCCEEEEEeCCChhHHHHHHH
Confidence 99999432211111100 334555665554 789999999999988554443 55679999999999999999999
Q ss_pred HHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEeCCCCHHHHH
Q 009574 330 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANT 409 (532)
Q Consensus 330 ~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~s~~a~~ 409 (532)
+++.+++.+.+.+|+|+|++...... ...+++.+.+|.++++.||++..+.+|...|+|+.++.|+++++++
T Consensus 153 ~~~~l~~~~~~~~~vv~N~~~~~~~~--------~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~~~~~~~~~ 224 (263)
T 1hyq_A 153 TKIVAERLGTKVLGVVVNRITTLGIE--------MAKNEIEAILEAKVIGLIPEDPEVRRAAAYGKPVVLRSPNSPAARA 224 (263)
T ss_dssp HHHHHHHHTCEEEEEEEEEECTTTHH--------HHHHHHHHHTTSCEEEEEECCHHHHHHHHHTSCHHHHCTTSHHHHH
T ss_pred HHHHHHhcCCCeeEEEEccCCccccc--------chHHHHHHHhCCCeEEECCCCHHHHHHHHcCCceEEcCCCCHHHHH
Confidence 99999888888999999996532210 3467788889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 009574 410 FQDLGVCVVQQ 420 (532)
Q Consensus 410 ~~~La~~i~~~ 420 (532)
|++++++|.++
T Consensus 225 ~~~la~~l~~~ 235 (263)
T 1hyq_A 225 IVELANYIAGG 235 (263)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHhh
Confidence 99999999765
No 7
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=99.97 E-value=3.2e-31 Score=260.96 Aligned_cols=232 Identities=20% Similarity=0.284 Sum_probs=172.2
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--cc---ccCCCCCceeecccCCc
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LL---EMNPEKRTIIPTEYLGV 250 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--~~---~~~~~~~~i~~~~~~~l 250 (532)
+.|++|+|+|+||||||||+|+|||..||++|+||++||+|+|++ +..++|.+.. +. ......+.+.+ .+|+
T Consensus 4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~-~~~~l~~~~~~~l~~~l~~~~~~~~i~~--~~~l 80 (257)
T 1wcv_1 4 AKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGN-ATSGLGVRAERGVYHLLQGEPLEGLVHP--VDGF 80 (257)
T ss_dssp -CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCH-HHHHTTCCCSCCHHHHHTTCCGGGTCEE--ETTE
T ss_pred CCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCcC-HHHHhCCCCCCCHHHHHcCCCHHHHccc--cCCE
Confidence 457899999999999999999999999999999999999999864 5556665431 11 01112223333 5799
Q ss_pred EEEecCCCCCcc--cccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHH
Q 009574 251 KLVSFGFSGQGR--AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 328 (532)
Q Consensus 251 ~vl~~~~~~~~~--~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~ 328 (532)
+++|++...... ...... ..+.++++. ..||||||||||+.+...... +..+|.+++|+.|+..++.++.
T Consensus 81 ~vlp~~~~~~~~~~~l~~~~---~~l~~~l~~---~~yD~iiiD~pp~~~~~~~~~--l~~aD~viiv~~~~~~s~~~~~ 152 (257)
T 1wcv_1 81 HLLPATPDLVGATVELAGAP---TALREALRD---EGYDLVLLDAPPSLSPLTLNA--LAAAEGVVVPVQAEYYALEGVA 152 (257)
T ss_dssp EEECCCTTHHHHHHHHTTCT---THHHHHCCC---TTCSEEEEECCSSCCHHHHHH--HHHCSEEEEEEESSTHHHHHHH
T ss_pred EEEeCChhHHHHHHHHhhHH---HHHHHHhcc---cCCCEEEEeCCCCCCHHHHHH--HHHCCeEEEEecCchHHHHHHH
Confidence 999976432211 111110 334444433 689999999999988654443 4578999999999999999888
Q ss_pred HHHHHHHc------CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcE-EeccCchhhhhcccCCCceEEeC
Q 009574 329 KGVRMFSK------LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPIRPTLSASGDSGMPEVAAD 401 (532)
Q Consensus 329 ~~i~~l~~------~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l-~~IP~~~~i~~a~~~g~pv~~~~ 401 (532)
++++.++. .+.++.|+|+||+.... ...++..+.+.+.+|.+++ +.||++..+.+|...|+|+.++.
T Consensus 153 ~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~------~~~~~~~~~l~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~ 226 (257)
T 1wcv_1 153 GLLATLEEVRAGLNPRLRLLGILVTMYDGRT------LLAQQVEAQLRAHFGEKVFWTVIPRNVRLAEAPSFGKTIAQHA 226 (257)
T ss_dssp HHHHHHHHHHHHTCTTCEEEEEEEESBCTTC------SHHHHHHHHHHHHHGGGBCSCCCBCCHHHHHHHHHTCCHHHHC
T ss_pred HHHHHHHHHHHHhCCCceEEEEEEEeECCCc------HHHHHHHHHHHHHccccccCccCCCcHHHHHHHHcCCCHHHhC
Confidence 88877764 25667899999965332 1223456778888887765 68999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Q 009574 402 PCGEVANTFQDLGVCVVQQCAKI 424 (532)
Q Consensus 402 p~s~~a~~~~~La~~i~~~~~~~ 424 (532)
|+++++++|++++++|.++....
T Consensus 227 ~~~~~~~~~~~la~~l~~~~~~~ 249 (257)
T 1wcv_1 227 PTSPGAHAYRRLAEEVMARVQEA 249 (257)
T ss_dssp TTSHHHHHHHHHHHHHHHHHC--
T ss_pred CCChHHHHHHHHHHHHHHhhccc
Confidence 99999999999999998876543
No 8
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=99.97 E-value=4.2e-30 Score=243.56 Aligned_cols=199 Identities=16% Similarity=0.121 Sum_probs=159.7
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 257 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 257 (532)
||+|+|+|+|||+||||+|+|||..|+++|+||++||+|+|++...++.. ...++++++.+.
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~------------------~~~~~~~~~~~~ 62 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKA------------------GKAAFDVFTAAS 62 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTT------------------SCCSSEEEECCS
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhc------------------CCCCCcEEecCc
Confidence 68999999999999999999999999999999999999998855433211 123477887542
Q ss_pred CCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC
Q 009574 258 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL 337 (532)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~ 337 (532)
..+.++++.+. +.||||||||||+.+...... +..+|.+++|+.|+..+ ..+.++++.+++.
T Consensus 63 --------------~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~--l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~ 124 (206)
T 4dzz_A 63 --------------EKDVYGIRKDL-ADYDFAIVDGAGSLSVITSAA--VMVSDLVIIPVTPSPLD-FSAAGSVVTVLEA 124 (206)
T ss_dssp --------------HHHHHTHHHHT-TTSSEEEEECCSSSSHHHHHH--HHHCSEEEEEECSCTTT-HHHHHHHHHHHTT
T ss_pred --------------HHHHHHHHHhc-CCCCEEEEECCCCCCHHHHHH--HHHCCEEEEEecCCHHH-HHHHHHHHHHHHH
Confidence 33445555554 689999999999997655444 55689999999999999 9999999999876
Q ss_pred C-----CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcE-EeccCchhhhhcccCCCceEEeCCCCHHHHHHH
Q 009574 338 K-----VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPIRPTLSASGDSGMPEVAADPCGEVANTFQ 411 (532)
Q Consensus 338 ~-----~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l-~~IP~~~~i~~a~~~g~pv~~~~p~s~~a~~~~ 411 (532)
+ .+ +++|+||++.... .. ....+..+.+|.+++ +.||++..+.++...|+|+++ .|+++++++|+
T Consensus 125 ~~~~~~~~-~~vv~N~~~~~~~------~~-~~~~~~l~~~~~~vl~~~Ip~~~~~~~a~~~g~~v~~-~~~s~~~~~~~ 195 (206)
T 4dzz_A 125 QAYSRKVE-ARFLITRKIEMAT------ML-NVLKESIKDTGVKAFRTAITQRQVYVKSILDGDSVFE-SSDGAAKGEIE 195 (206)
T ss_dssp SCGGGCCE-EEEEECSBCTTEE------EE-HHHHHHHHHHTCCBCSSCCBCCHHHHHHHHTTCCGGG-SSCHHHHHHHH
T ss_pred HHhCCCCc-EEEEEeccCCCch------HH-HHHHHHHHHcCCceeeccccccHHHHHHHHcCCCccc-CCchHHHHHHH
Confidence 4 34 4999999763321 11 234555566898888 889999999999999999999 99999999999
Q ss_pred HHHHHHHHHH
Q 009574 412 DLGVCVVQQC 421 (532)
Q Consensus 412 ~La~~i~~~~ 421 (532)
+|+++|.+++
T Consensus 196 ~la~~i~~~l 205 (206)
T 4dzz_A 196 ILTKEIVRIF 205 (206)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998875
No 9
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=99.96 E-value=1.8e-29 Score=254.94 Aligned_cols=232 Identities=18% Similarity=0.144 Sum_probs=171.1
Q ss_pred ccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--cccc---------CCCCCce
Q 009574 174 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEM---------NPEKRTI 242 (532)
Q Consensus 174 ~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--~~~~---------~~~~~~i 242 (532)
..+.+++|+|+ +||||||||+|+|||.+||++|+||++||+|+|++....+ +.... +.+. ....+.+
T Consensus 37 ~~~~~~vI~v~-~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~l-~~~~~~~l~d~l~~~~~~~~~~~~~~~ 114 (307)
T 3end_A 37 KITGAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTL-TGSLVPTVIDVLKDVDFHPEELRPEDF 114 (307)
T ss_dssp ---CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHH-HTSCCCCHHHHHHHTTSCGGGCCHHHH
T ss_pred ccCCceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHh-CccCCCCHHHHHhhccccccCCCHHHh
Confidence 34568999999 8999999999999999999999999999999998665443 32211 1000 1111122
Q ss_pred eecccCCcEEEecCCCCCcccccCCchHHHHHHHHHHh-cccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc
Q 009574 243 IPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTT-TEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK 321 (532)
Q Consensus 243 ~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~ 321 (532)
.....+|++++|++........ .... ......+++. ..++.||||||||||+.+.... ...+..+|.+++|+.|+.
T Consensus 115 i~~~~~~l~vlp~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~yD~ViiD~p~~~~~~~~-~~~l~~aD~viiv~~~~~ 191 (307)
T 3end_A 115 VFEGFNGVMCVEAGGPPAGTGC-GGYV-VGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTANDF 191 (307)
T ss_dssp CEECGGGCEEEECCCCCSSSSC-TTHH-HHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECSSH
T ss_pred hccCCCCceEEECCCccccccc-chhh-hHHHHHHHHhhhccccCCEEEEeCCCccchHHH-HHHHHHCCEEEEEecCcH
Confidence 2235679999997754322111 1111 1122233333 1247899999999998764322 122567899999999999
Q ss_pred chHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCce
Q 009574 322 LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPE 397 (532)
Q Consensus 322 ~s~~~~~~~i~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv 397 (532)
.++.++.++++.++.. +.+++|+|+||+.. +...+++.+.+|.++++.||++..+.+|...|+|+
T Consensus 192 ~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~-----------~~~~~~~~~~~g~~v~~~Ip~~~~v~~a~~~g~~v 260 (307)
T 3end_A 192 DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA-----------TDEVDRFCKETNFRRLAHMPDLDAIRRSRLKKKTL 260 (307)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC-----------CHHHHHHHHHHTCCEEEEECCCHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc-----------HHHHHHHHHHcCCCceeeCCccHHHHHHHHcCCCe
Confidence 9999999999999863 56789999999652 13578888999999999999999999999999999
Q ss_pred EEeCCC---CHHHHHHHHHHHHHHHHH
Q 009574 398 VAADPC---GEVANTFQDLGVCVVQQC 421 (532)
Q Consensus 398 ~~~~p~---s~~a~~~~~La~~i~~~~ 421 (532)
.++.|+ ++++++|++|+++|.++.
T Consensus 261 ~~~~p~~~~s~~~~~~~~la~~l~~~~ 287 (307)
T 3end_A 261 FEMDEDQDVLAARAEYIRLAESLWRGL 287 (307)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred EeeCCccccHHHHHHHHHHHHHHHhcC
Confidence 999999 899999999999998643
No 10
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=99.96 E-value=1.4e-29 Score=250.51 Aligned_cols=231 Identities=18% Similarity=0.082 Sum_probs=154.4
Q ss_pred ccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCc---------cc----ccccCCCCC
Q 009574 174 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE---------NR----LLEMNPEKR 240 (532)
Q Consensus 174 ~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~---------~~----~~~~~~~~~ 240 (532)
..+++++|+|+|+||||||||+|+|||.+|| +|+||++||+|++++.+.++++.. .. +.......+
T Consensus 23 ~~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 101 (267)
T 3k9g_A 23 DNKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVDIDS 101 (267)
T ss_dssp ---CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHTHHHHHHTTCCTTTSSHHHHHTTSSCGGG
T ss_pred CCCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHhhccccccccCcccccHHHHhcCCCCHHH
Confidence 3467899999999999999999999999999 999999999999987665553211 01 111112223
Q ss_pred ceeecccCCcEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC
Q 009574 241 TIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ 320 (532)
Q Consensus 241 ~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~ 320 (532)
.+.+. .+|++++|++.................+.++++.+. +.||||||||||+.+...... +..+|.+++|+.|+
T Consensus 102 ~i~~~-~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~pp~~~~~~~~~--l~~aD~vivv~~~~ 177 (267)
T 3k9g_A 102 TIINV-DNNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTLY-YKYDYIVIDTNPSLDVTLKNA--LLCSDYVIIPMTAE 177 (267)
T ss_dssp GCEEE-ETTEEEECCCGGGGGTTTCCCTTGGGHHHHHHHTTC-TTCSEEEEEECSSCSHHHHHH--HTTCSEEEEEEESC
T ss_pred hhccC-CCCEEEEeCChHHHHHHHhhhhhHHHHHHHHHHHhh-cCCCEEEEECcCCccHHHHHH--HHHCCeEEEEeCCC
Confidence 33333 489999998754322111111112345666776665 799999999999998665444 56789999999999
Q ss_pred cchHHHHHHHHHHHHcCCCC-EEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEE
Q 009574 321 KLAFIDVAKGVRMFSKLKVP-CIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVA 399 (532)
Q Consensus 321 ~~s~~~~~~~i~~l~~~~~~-~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~ 399 (532)
..++..+.++++.+++.+.+ .+++|+||+.. . ...++..+.+.+ +.++++.||+++.+.++...|.|+..
T Consensus 178 ~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~-~------~~~~~~~~~l~~--~~~~~~~Ip~~~~~~~a~~~g~~~~~ 248 (267)
T 3k9g_A 178 KWAVESLDLFNFFVRKLNLFLPIFLIITRFKK-N------RTHKTLFEILKT--KDRFLGTISEREDLNRRIAENNNFDL 248 (267)
T ss_dssp TTHHHHHHHHHHHHHTTTCCCCEEEEEEEECT-T------CSCCHHHHHHTT--STTEEEEEEC----------------
T ss_pred hHHHHHHHHHHHHHHHHhccCCEEEEEecccC-c------chHHHHHHHHhc--CcccceecCcHHHHHHHHHhcCCcch
Confidence 99999999999999988643 35799999731 1 112334444444 77899999999999999999998765
Q ss_pred eCCCCHHHHHHHHHHHHHHHHH
Q 009574 400 ADPCGEVANTFQDLGVCVVQQC 421 (532)
Q Consensus 400 ~~p~s~~a~~~~~La~~i~~~~ 421 (532)
.+++.++|+++++++++++
T Consensus 249 ---~~~~~~~~~~i~~~l~~~l 267 (267)
T 3k9g_A 249 ---NKDYIKEYENILEIFLKKI 267 (267)
T ss_dssp ---CCHHHHHHHHHHHHHHHHC
T ss_pred ---hHHHHHHHHHHHHHHHhhC
Confidence 5789999999999998753
No 11
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=99.96 E-value=5.1e-30 Score=253.71 Aligned_cols=233 Identities=19% Similarity=0.188 Sum_probs=169.1
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--c----ccc--CCCCCceeecccCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L----LEM--NPEKRTIIPTEYLG 249 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--~----~~~--~~~~~~i~~~~~~~ 249 (532)
||+|+| |+||||||||+|+|||..||++|+||++||+|+|++++.++++.... + ... ......+.....+|
T Consensus 1 M~vI~v-s~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~ 79 (269)
T 1cp2_A 1 MRQVAI-YGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSILKEGYGG 79 (269)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHCEECGGG
T ss_pred CcEEEE-ecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHhcCCCCcccHHHHHhccCcCCCHHHhhccCCCC
Confidence 689999 68999999999999999999999999999999999888777654322 1 000 00111122344679
Q ss_pred cEEEecCCCCCcccccCCchHH--HHHHHHHHhcccCCCCEEEEcCCCCCChhhhhh-hhhcCCCeEEEEeCCCcchHHH
Q 009574 250 VKLVSFGFSGQGRAIMRGPMVS--GVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL-CQVVPLTAAVIVTTPQKLAFID 326 (532)
Q Consensus 250 l~vl~~~~~~~~~~~~~~~~~~--~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~-~~~~~~d~viiV~~p~~~s~~~ 326 (532)
++++|++......... ..... ..+.+.+..+ .++||||||||||+.....+.. .....+|.+++|+.|+..++..
T Consensus 80 l~vl~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l-~~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~ 157 (269)
T 1cp2_A 80 IRCVESGGPEPGVGCA-GRGIITSINMLEQLGAY-TDDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYA 157 (269)
T ss_dssp CEEEECCCCCTTSSCH-HHHHHHHHHHHHHTTCC-CTTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHH
T ss_pred eeEEeCCCchhhcccc-CcchhhHHHHHHHHHhh-ccCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHH
Confidence 9999977543221110 00110 0111222222 3679999999998764322211 1123689999999999999999
Q ss_pred HHHHHHHHHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEeCC
Q 009574 327 VAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADP 402 (532)
Q Consensus 327 ~~~~i~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p 402 (532)
+.++++.++.. +.+++|+|+||+... ..++..+++.+.+|.++++.||++..+.+|...|+|++++.|
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~--------~~~~~~~~l~~~~~~~v~~~Ip~~~~~~~a~~~g~~v~~~~~ 229 (269)
T 1cp2_A 158 ANNISKGIQKYAKSGGVRLGGIICNSRKVA--------NEYELLDAFAKELGSQLIHFVPRSPMVTKAEINKQTVIEYDP 229 (269)
T ss_dssp HHHHHHHHHHHBTTBBCEEEEEEEECCSSS--------CCHHHHHHHHHHHTCCEEEEECCCHHHHHHHHTTSCHHHHCT
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEeecCCcc--------hhHHHHHHHHHHcCCcccccCCCCcHHHHHHHcCCceEEECC
Confidence 98888887653 566789999996421 123567888889999988999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 009574 403 CGEVANTFQDLGVCVVQQC 421 (532)
Q Consensus 403 ~s~~a~~~~~La~~i~~~~ 421 (532)
+++++++|.+++++|.++.
T Consensus 230 ~s~~~~~~~~l~~~l~~~~ 248 (269)
T 1cp2_A 230 TCEQAEEYRELARKVDANE 248 (269)
T ss_dssp TSHHHHHHHHHHHHHHHCC
T ss_pred CChHHHHHHHHHHHHHhcc
Confidence 9999999999999998654
No 12
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=99.96 E-value=1.2e-29 Score=254.10 Aligned_cols=232 Identities=21% Similarity=0.198 Sum_probs=168.3
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc--cc---ccC-----CCCCceeeccc
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LL---EMN-----PEKRTIIPTEY 247 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--~~---~~~-----~~~~~i~~~~~ 247 (532)
||+|+| |+||||||||+|+|||.+||++|+||++||+|+|++++.++++.... +. ... .....+.....
T Consensus 2 MkvIav-s~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~ 80 (289)
T 2afh_E 2 MRQCAI-YGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKAGY 80 (289)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCEECG
T ss_pred ceEEEE-eCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHhcCCCCCCcHHHHHhcccccccCCHHHhhccCC
Confidence 689999 58999999999999999999999999999999999988877654322 11 000 01111223446
Q ss_pred CCcEEEecCCCCCcccccCCchHHHHHHHHHHhcc--cCCCCEEEEcCCCCCChhhhh-hhhhcCCCeEEEEeCCCcchH
Q 009574 248 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTE--WGELDYLVIDMPPGTGDIQLT-LCQVVPLTAAVIVTTPQKLAF 324 (532)
Q Consensus 248 ~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~yD~VIIDtpp~~~~~~~~-~~~~~~~d~viiV~~p~~~s~ 324 (532)
+|++++|++......... ..... ...++++.+. .+.||||||||||......+. ......+|.+++|+.|+..++
T Consensus 81 ~~l~~l~~~~~~~~~~~~-~~~~~-~~~~l~~~l~~l~~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~ 158 (289)
T 2afh_E 81 GGVKCVESGGPEPGVGCA-GRGVI-TAINFLEEEGAYEDDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAM 158 (289)
T ss_dssp GGCEEEECCCCCTTTCCH-HHHHH-HHHHHHHHTTCSSTTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHH
T ss_pred CCeEEEeCCCcccccccc-chhhh-HHHHHHHHHHhhccCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHH
Confidence 799999976542221100 00010 1112333321 268999999999865432211 111246899999999999999
Q ss_pred HHHHHHHHHHHc----CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEe
Q 009574 325 IDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAA 400 (532)
Q Consensus 325 ~~~~~~i~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~ 400 (532)
.++.++++.++. .+.++.|+|+|++.. . ..++..+.+.+.+|.++++.||++..+.+|...|+|+.++
T Consensus 159 ~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~--~------~~~~~~~~l~~~~g~~~l~~Ip~~~~~~~a~~~g~~v~~~ 230 (289)
T 2afh_E 159 YAANNISKGIVKYANSGSVRLGGLICNSRNT--D------REDELIIALANKLGTQMIHFVPRDNVVQRAEIRRMTVIEY 230 (289)
T ss_dssp HHHHHHHHHHHHHHTTSCCEEEEEEEECCCC--T------THHHHHHHHHHHHTSCEEEEECCCHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEEecCCc--h------hHHHHHHHHHHHcCccccccCCCchhHHHHHHcCCCceee
Confidence 999888877764 367788999999642 1 1234677888899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 009574 401 DPCGEVANTFQDLGVCVVQQ 420 (532)
Q Consensus 401 ~p~s~~a~~~~~La~~i~~~ 420 (532)
.|+++++++|++|+++|.++
T Consensus 231 ~~~s~~~~~~~~la~~l~~~ 250 (289)
T 2afh_E 231 DPKAKQADEYRALARKVVDN 250 (289)
T ss_dssp CTTSHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999764
No 13
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=99.96 E-value=1.5e-29 Score=247.01 Aligned_cols=224 Identities=14% Similarity=0.061 Sum_probs=168.5
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccc----cCC------------------
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE----MNP------------------ 237 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~----~~~------------------ 237 (532)
.|+| |+||||||||+|+|||..||++|+||++||+|+| +++..++|.+..... ...
T Consensus 2 kI~v-s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~-~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (254)
T 3kjh_A 2 KLAV-AGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD-SCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLILN 79 (254)
T ss_dssp EEEE-ECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT-SCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCSS
T ss_pred EEEE-ecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC-cChHHHhCCCcccccccccchhHHHHHHhhccCCcccccC
Confidence 4888 7999999999999999999999999999999998 788888876543210 000
Q ss_pred CCCceee----cccCCcEE-EecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCe
Q 009574 238 EKRTIIP----TEYLGVKL-VSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTA 312 (532)
Q Consensus 238 ~~~~i~~----~~~~~l~v-l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~ 312 (532)
..-...+ ....++++ ++.+.......... ......+.++++.+.++.||||||||||+.+...... +..+|.
T Consensus 80 ~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~l~~l~~~~yD~viiD~pp~~~~~~~~~--l~~aD~ 156 (254)
T 3kjh_A 80 PKVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCY-CRENSFLGSVVSALFLDKKEAVVMDMGAGIEHLTRGT--AKAVDM 156 (254)
T ss_dssp CCCTTSGGGSSEESSSSEEEEECCCCCCCCSSCC-HHHHHHHHHHHHHHHHTCCSEEEEEECTTCTTCCHHH--HTTCSE
T ss_pred CchhccHHhcccccCCeEEEEEecccccCCCCCC-cchHHHHHHHHHHhccCCCCEEEEeCCCcccHHHHHH--HHHCCE
Confidence 0000011 12346677 76554322111111 0111456666666623899999999999988644433 568899
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhC-CCcEEeccCchhhhhcc
Q 009574 313 AVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFG-IPHLFDLPIRPTLSASG 391 (532)
Q Consensus 313 viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~l~~IP~~~~i~~a~ 391 (532)
+++|+.|+..++..+.++.+.+.+.+.+.+++|+||+... ...+++.+.++ .++.+.||++..+.++.
T Consensus 157 viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~~-----------~~~~~~~~~~~~~~~~~~Ip~~~~~~~a~ 225 (254)
T 3kjh_A 157 MIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRNI-----------KEEKLIKKHLPEDKILGIIPYNELFIELS 225 (254)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECCH-----------HHHHHHHHHSCGGGEEEEEECCHHHHSCS
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCCh-----------hHHHHHHHHhcCCcccccccCcHHHHHHH
Confidence 9999999999999999999999988888899999996521 24677888887 67788999999999999
Q ss_pred cCCCceEEeCCCCHHHHHHHHHHHHHHHHH
Q 009574 392 DSGMPEVAADPCGEVANTFQDLGVCVVQQC 421 (532)
Q Consensus 392 ~~g~pv~~~~p~s~~a~~~~~La~~i~~~~ 421 (532)
..|+|++++.| +++++|++++++|.++.
T Consensus 226 ~~g~~~~~~~~--~~~~~~~~la~~l~~~~ 253 (254)
T 3kjh_A 226 LKGEEIWQSTN--PAFVNLHDIYQKLRLEV 253 (254)
T ss_dssp SSSCCTTSTTS--TTHHHHHHHHHHHHHHH
T ss_pred hCCCccccCCc--HHHHHHHHHHHHHHhhc
Confidence 99999988876 69999999999998765
No 14
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.96 E-value=7.9e-29 Score=249.00 Aligned_cols=239 Identities=14% Similarity=0.142 Sum_probs=174.4
Q ss_pred CcceEEEEEe--CcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCC---CCCCCccc---cc---ccCCCCCceee
Q 009574 176 KISNIVAVSS--CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP---TMVSPENR---LL---EMNPEKRTIIP 244 (532)
Q Consensus 176 ~~~kiIav~s--~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~---~~lg~~~~---~~---~~~~~~~~i~~ 244 (532)
.+.++|+|+| +||||||||+|+|||..||++|+||++||+|+|++... ..++.+.. +. ......+.+..
T Consensus 32 ~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 111 (298)
T 2oze_A 32 NKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLASSIVH 111 (298)
T ss_dssp HHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHTCCGGGCEE
T ss_pred CCCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcCChhhhhcc
Confidence 3457899998 89999999999999999999999999999999987532 22343311 10 00111223333
Q ss_pred cccCCcEEEecCCCCCcccccC----CchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC
Q 009574 245 TEYLGVKLVSFGFSGQGRAIMR----GPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ 320 (532)
Q Consensus 245 ~~~~~l~vl~~~~~~~~~~~~~----~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~ 320 (532)
. .+|++++|++........+. .......+.++++.+. +.||||||||||+.+...... +.++|.+++|+.|+
T Consensus 112 ~-~~~l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~~~~~~--l~~aD~viiv~~~~ 187 (298)
T 2oze_A 112 L-TDNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLK-SDYDLIIIDTVPTPSVYTNNA--IVASDYVMIPLQAE 187 (298)
T ss_dssp S-SSSEEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGGGG-GGCSEEEEEECSSCSHHHHHH--HHHCSEEEEEECGG
T ss_pred c-CCCeEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHHHh-cCCCEEEEECCCCccHHHHHH--HHHCCeEEEEecCc
Confidence 3 47999999775332111110 0112345777777775 789999999999998765444 45689999999999
Q ss_pred cchHHHHHHHHHHHHc------CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCC--CcE-EeccCchhhhhcc
Q 009574 321 KLAFIDVAKGVRMFSK------LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGI--PHL-FDLPIRPTLSASG 391 (532)
Q Consensus 321 ~~s~~~~~~~i~~l~~------~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~--~~l-~~IP~~~~i~~a~ 391 (532)
..++.++.++++.+.+ .+.+++|+|+||++.... ...+..+++.+.++. +++ ..||.+..+.+|.
T Consensus 188 ~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~Ip~~~~~~~a~ 261 (298)
T 2oze_A 188 EESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSA------TIKSNLEELYKQHKEDNLVFQNIIKRSNKVSTWS 261 (298)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCH------HHHHHHHHHHHHTTTTCCBCSSCEECCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcH------HHHHHHHHHHHHhccccccccccccccHHHHHHH
Confidence 9999999998888875 367789999999654321 123467788888885 443 5799999999999
Q ss_pred cCCCceEEeCCCCHHHHHHHHHHHHHHHHHHHhh
Q 009574 392 DSGMPEVAADPCGEVANTFQDLGVCVVQQCAKIR 425 (532)
Q Consensus 392 ~~g~pv~~~~p~s~~a~~~~~La~~i~~~~~~~~ 425 (532)
..|+|+++ ..+++++++|.+++++|++++....
T Consensus 262 ~~G~~v~~-~~~~~~~~~~~~la~ei~~~~~~~~ 294 (298)
T 2oze_A 262 KNGITEHK-GYDKKVLSMYKNVFFEMLERIIQLE 294 (298)
T ss_dssp HHCCCSSS-TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCChhh-hcChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999986 2234689999999999998886654
No 15
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=99.95 E-value=1.9e-29 Score=264.07 Aligned_cols=242 Identities=17% Similarity=0.206 Sum_probs=173.1
Q ss_pred cCcceEEEEEeCcCCCcHHHHHHHHHHHHHH------CCCcEEEEEcCCCCCCCCCCCCCccccc-----------cc--
Q 009574 175 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADVYGPSLPTMVSPENRLL-----------EM-- 235 (532)
Q Consensus 175 ~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~------~G~rVllID~D~~~~s~~~~lg~~~~~~-----------~~-- 235 (532)
.+++++|+|+|+||||||||+|+|||..||+ +|+||++||+|+|+ ++..++|...... ..
T Consensus 105 ~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~-~l~~~l~~~~~~~~~~~~~~~~l~~~~~ 183 (398)
T 3ez2_A 105 YSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQS-SATMFLSHKHSIGIVNATSAQAMLQNVS 183 (398)
T ss_dssp CCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTC-HHHHHHSCHHHHSSCCSCHHHHHHHCCC
T ss_pred CCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC-ChhHHhCCccccccccccHHHHHHhhcc
Confidence 4568999999999999999999999999994 69999999999986 5667776543210 00
Q ss_pred --CCCCCceeecccCCcEEEecCCCCCcc----------cccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhh
Q 009574 236 --NPEKRTIIPTEYLGVKLVSFGFSGQGR----------AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT 303 (532)
Q Consensus 236 --~~~~~~i~~~~~~~l~vl~~~~~~~~~----------~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~ 303 (532)
....+.+.+...+|++++|++...... ...........++++++.+. ++||||||||||+++.....
T Consensus 184 ~~~~~~~~i~~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~-~~yD~ViiD~pp~~~~~~~~ 262 (398)
T 3ez2_A 184 REELLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKLK-SDYDFILVDSGPHLDAFLKN 262 (398)
T ss_dssp HHHHHHHTCEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTHHHHT-TTCSEEEEEECSCCSHHHHH
T ss_pred ccccHHHHhhcccCCCceEecCCchhhhHHHHHHHHHHhhccccChHHHHHHHHHHHhh-ccCCEEEEeCCCCccHHHHH
Confidence 011234556667899999987542100 00011111224455565554 79999999999999876655
Q ss_pred hhhhcCCCeEEEEeCCCcchHHHHHH-------HHHHHHcC--CCCEEEEEEecccccCCCccccccCCchHHHHHHHhC
Q 009574 304 LCQVVPLTAAVIVTTPQKLAFIDVAK-------GVRMFSKL--KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFG 374 (532)
Q Consensus 304 ~~~~~~~d~viiV~~p~~~s~~~~~~-------~i~~l~~~--~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g 374 (532)
. +..+|.+++|+.|+..++..+.+ .++.+++. +.++.|+|.|+....... ..+...+++.+.+|
T Consensus 263 ~--l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~~~-----~~~~~~~~l~~~~g 335 (398)
T 3ez2_A 263 A--LASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNKA-----DHKYCHSLAKEVFG 335 (398)
T ss_dssp H--HHHCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECSCH-----HHHHHHHHHHHHHG
T ss_pred H--HHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCCch-----hHHHHHHHHHHHhc
Confidence 4 55789999999999886654443 34444444 455667777775544321 12245678888899
Q ss_pred CCcE-EeccCchhhhhcccCCCceEEeCCCC---------HHHHHHHHHHHHHHHHHHHhh
Q 009574 375 IPHL-FDLPIRPTLSASGDSGMPEVAADPCG---------EVANTFQDLGVCVVQQCAKIR 425 (532)
Q Consensus 375 ~~~l-~~IP~~~~i~~a~~~g~pv~~~~p~s---------~~a~~~~~La~~i~~~~~~~~ 425 (532)
.+++ +.||++..+.++...|+|++++.|++ .+..++.+++++|.++++.++
T Consensus 336 ~~vl~~~IP~~~~i~~a~~~G~~v~~~~p~s~~~~~~~~~~a~~~~~~l~~~i~~~l~~~~ 396 (398)
T 3ez2_A 336 GDMLDVFLPRLDGFERCGESFDTVISANPATYVGSADALKNARIAAEDFAKAVFDRIEFIR 396 (398)
T ss_dssp GGBCSCCEECCHHHHHHHHTTCCTTTSCTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceeccchHHHHHHHhcCCCceeeccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8777 78999999999999999999998863 577788899999988887764
No 16
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=99.95 E-value=2.1e-28 Score=252.51 Aligned_cols=244 Identities=17% Similarity=0.130 Sum_probs=148.1
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcc---------------------ccccc-
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN---------------------RLLEM- 235 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~---------------------~~~~~- 235 (532)
||+|+|+|+||||||||+|+|||..||++|+|||+||+|+|++.+..+++.+. .+.+.
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~l 80 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNATQLMLTEEQTESIYLDGLNDEVAERNSLAKTVYAIF 80 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTTHHHHSCHHHHHHHCCC----CGGGGGHHHHSGGGGG
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCChhhhhcCchhhhhhhcccccccccccccccCCHHHHH
Confidence 68999999999999999999999999999999999999999988777765321 11111
Q ss_pred -------CCCCC--ceeecccCCcEEEecCCCCCccccc-C--------Cc----hHHHHHHHHHHhcc-cCCCCEEEEc
Q 009574 236 -------NPEKR--TIIPTEYLGVKLVSFGFSGQGRAIM-R--------GP----MVSGVINQLLTTTE-WGELDYLVID 292 (532)
Q Consensus 236 -------~~~~~--~i~~~~~~~l~vl~~~~~~~~~~~~-~--------~~----~~~~~l~~ll~~~~-~~~yD~VIID 292 (532)
....+ .+.....+|++++|++......... . +. .....+.++++.+. +..|||||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~L~llp~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~yD~VIID 160 (361)
T 3pg5_A 81 VPLREGESQIAAEITPMRSERFGVDVLPGHPALSQIEDLMSDSWQSALGRQTGPFRRIHWAGQLAHAMERDDRYDVIFFD 160 (361)
T ss_dssp HHHHTTCSSCCCCCCCBCCTTTTSEEECCCGGGGTHHHHHHHHHHHHHTTCHHHHTTTTHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHhcCCCChhhcceeeccCCCCEEEEeCCchHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHhhccCCCEEEEE
Confidence 11111 2444456799999977543222110 0 00 00123566666554 2499999999
Q ss_pred CCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC----------------------------------
Q 009574 293 MPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK---------------------------------- 338 (532)
Q Consensus 293 tpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~---------------------------------- 338 (532)
|||+++.....+ +.++|.+++|+.|+..++.++.++++.+++.+
T Consensus 161 ~pP~l~~~~~~a--L~~aD~viip~~~~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 238 (361)
T 3pg5_A 161 VGPSLGPFNRTV--LLGCDAFVTPTATDLFSFHAFGNLARWFDAWVTQYAEIHEGNMAEWKKYSADVEAKTRPLRLGGFD 238 (361)
T ss_dssp CCSCCSHHHHHH--HTTCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTHHHHTSSSCTTSSS
T ss_pred CCCCcCHHHHHH--HHHCCEEEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCcccccccccccccccc
Confidence 999998665544 66789999999999999999988887776541
Q ss_pred ---CCEEEEEEecccccCCCc--cccccCCchHHHHHHHh-----------CCCcEEeccCch-hhhhcccCCCceEEeC
Q 009574 339 ---VPCIAVVENMCHFDADGK--RYYPFGRGSGSQVVQQF-----------GIPHLFDLPIRP-TLSASGDSGMPEVAAD 401 (532)
Q Consensus 339 ---~~~~gvV~N~~~~~~~~~--~~~~~~~~~~~~l~~~~-----------g~~~l~~IP~~~-~i~~a~~~g~pv~~~~ 401 (532)
.+++|+|+|+++...... ..........+++.+.. ....++.||... .+..|...|.|++...
T Consensus 239 ~~~l~~lG~v~n~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~~~s~~~~aq~~~~Pi~~l~ 318 (361)
T 3pg5_A 239 GEGLRYLGYTTLEYVKRRANGQEQLVGAFERFRGRFAAEAERISNSLSKHSNSTLLGHVPHMHSMPATAQDVHAPIMELS 318 (361)
T ss_dssp SSCCEEEEEEECC-----------------TTHHHHHHHHHHHHHHSCSSCCCCEEEECC--------------------
T ss_pred ccccceeeEEEEcchhhcCCCchhhhHHHHHHHHHHHHHHHhccccccCCCCccccccCCchhhHHHHHHHHCCCeEECc
Confidence 678999999965443111 00112223344444444 334578888765 5678999999999997
Q ss_pred CC-----------CHHHHHHHHHHHHHHHHHHH
Q 009574 402 PC-----------GEVANTFQDLGVCVVQQCAK 423 (532)
Q Consensus 402 p~-----------s~~a~~~~~La~~i~~~~~~ 423 (532)
+. ..+.+.|.+||..|++++..
T Consensus 319 ~~~~~~g~~~~~~~~~~~~~~~la~~i~~~~~~ 351 (361)
T 3pg5_A 319 SSDRVRGAQINQRNAYAEKINSVAANVYKALFP 351 (361)
T ss_dssp --------------CCHHHHHHHHHHHHHHHCC
T ss_pred hhcCCccHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 73 36778888899888877643
No 17
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=99.95 E-value=5.2e-29 Score=261.10 Aligned_cols=242 Identities=18% Similarity=0.200 Sum_probs=138.8
Q ss_pred cCcceEEEEEeCcCCCcHHHHHHHHHHHHH------HCCCcEEEEEcCCCCCCCCCCCCCccccc-----------c---
Q 009574 175 QKISNIVAVSSCKGGVGKSTVAVNLAYTLA------GMGARVGIFDADVYGPSLPTMVSPENRLL-----------E--- 234 (532)
Q Consensus 175 ~~~~kiIav~s~KGGvGKTTlA~nLA~~LA------~~G~rVllID~D~~~~s~~~~lg~~~~~~-----------~--- 234 (532)
.+++++|+|+|+||||||||+|+|||..|| +.|+||++||+|+++ ++..+||...... .
T Consensus 108 ~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~-~l~~~l~~~~~~~~~~~~~~~~l~~~~~ 186 (403)
T 3ez9_A 108 HKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQA-SSTMFLDHTHSIGSILETAAQAMLNNLD 186 (403)
T ss_dssp SCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSS-GGGSCC----------CCHHHHHHHTCC
T ss_pred CCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC-ChhhhhCCCcccCcccccHHHHHHhccc
Confidence 456899999999999999999999999999 679999999999987 6777777654211 0
Q ss_pred -cCCCCCceeecccCCcEEEecCCCCCcc---------cccCC-chHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhh
Q 009574 235 -MNPEKRTIIPTEYLGVKLVSFGFSGQGR---------AIMRG-PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT 303 (532)
Q Consensus 235 -~~~~~~~i~~~~~~~l~vl~~~~~~~~~---------~~~~~-~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~ 303 (532)
.....+.+.+...+|++++|++...... ..+.+ .....+++++++.+. +.||||||||||+++.....
T Consensus 187 ~~~~~~~~i~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~yD~VIID~pP~~~~~~~~ 265 (403)
T 3ez9_A 187 AETLRKEVIRPTIVPGVDVIPASIDDGFVASQWRELVEEHLPGQNQYEILRRNIIDRVA-DDYDFIFIDTGPHLDPFLLN 265 (403)
T ss_dssp HHHHHHTTSEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTGGGSG-GGCSEEEEEECSSCSHHHHH
T ss_pred ccccHHHHHhhcccCCceEEecCcchhhHHHHHHHHHHHhccccchHHHHHHHHHHHHh-hcCCEEEEECCCCccHHHHH
Confidence 0012344566667899999987542100 00111 111224456666654 79999999999999866554
Q ss_pred hhhhcCCCeEEEEeCCCcchHHHHHH-------HHHHHHcC--CCCEEEEEEecccccCCCccccccCCchHHHHHHHhC
Q 009574 304 LCQVVPLTAAVIVTTPQKLAFIDVAK-------GVRMFSKL--KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFG 374 (532)
Q Consensus 304 ~~~~~~~d~viiV~~p~~~s~~~~~~-------~i~~l~~~--~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g 374 (532)
. +..+|.+++|+.|+..++..+.+ +++.+++. +.++.|++.++..+... ...+...+.+.+.+|
T Consensus 266 a--l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~~-----~~~~~~~~~~~~~~g 338 (403)
T 3ez9_A 266 G--LAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTGK-----RDHETSHSLAREVYA 338 (403)
T ss_dssp H--HHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---C-----HHHHHHHHHHHHHHT
T ss_pred H--HHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCCc-----hhHHHHHHHHHHHhh
Confidence 4 55789999999999887655443 44445544 34455665544333321 012235677888899
Q ss_pred CCcE-EeccCchhhhhcccCCCceEEeCCC---------CHHHHHHHHHHHHHHHHHHHhh
Q 009574 375 IPHL-FDLPIRPTLSASGDSGMPEVAADPC---------GEVANTFQDLGVCVVQQCAKIR 425 (532)
Q Consensus 375 ~~~l-~~IP~~~~i~~a~~~g~pv~~~~p~---------s~~a~~~~~La~~i~~~~~~~~ 425 (532)
.+++ +.||++..+.++...|+|++++.|+ ..+.++|.+++++|.++++.++
T Consensus 339 ~~vl~~~IP~~~~v~~a~~~G~~v~~~~p~s~~~~~~~~~~~~~~~~~la~~i~~~i~~~~ 399 (403)
T 3ez9_A 339 SNILDSSLPRLDGFERCGESFDTVISANPQSYPGSAEALKKARTEAERFTKAVFDRIEFVR 399 (403)
T ss_dssp TSEECCC-----------------------------CTTHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhhhceeCCchHHHHHHHhcCCCceecCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8887 7899999999999999999999875 3566789999999988887764
No 18
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.95 E-value=6.4e-28 Score=230.01 Aligned_cols=199 Identities=21% Similarity=0.230 Sum_probs=153.8
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 258 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~~ 258 (532)
|+|+|+|+||||||||+|+|||..|+++| ||++||+|+|++... +++. . + .+ .++++..
T Consensus 1 kvI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~-~~~~-~---------~--l~-----~~vi~~~-- 59 (209)
T 3cwq_A 1 MIITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATG-WGKR-G---------S--LP-----FKVVDER-- 59 (209)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHH-HHHH-S---------C--CS-----SEEEEGG--
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHH-HhcC-C---------C--CC-----cceeCHH--
Confidence 48999999999999999999999999999 999999999975432 2222 0 0 01 1455421
Q ss_pred CCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCC-CChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC
Q 009574 259 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPG-TGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL 337 (532)
Q Consensus 259 ~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~-~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~ 337 (532)
.++.+ ++.||||||||||+ .+...... +..+|.+++|+.|+..++..+.++++.+++.
T Consensus 60 --------------~l~~l-----~~~yD~viiD~p~~~~~~~~~~~--l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~ 118 (209)
T 3cwq_A 60 --------------QAAKY-----APKYQNIVIDTQARPEDEDLEAL--ADGCDLLVIPSTPDALALDALMLTIETLQKL 118 (209)
T ss_dssp --------------GHHHH-----GGGCSEEEEEEECCCSSSHHHHH--HHTSSEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred --------------HHHHh-----hhcCCEEEEeCCCCcCcHHHHHH--HHHCCEEEEEecCCchhHHHHHHHHHHHHhc
Confidence 23333 27899999999999 77654443 5578999999999999999999999999885
Q ss_pred -CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcE-EeccCchhhhhcccCCCceEEe-CCCC-HHHHHHHHH
Q 009574 338 -KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPIRPTLSASGDSGMPEVAA-DPCG-EVANTFQDL 413 (532)
Q Consensus 338 -~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l-~~IP~~~~i~~a~~~g~pv~~~-~p~s-~~a~~~~~L 413 (532)
+.+ +++|+||++.... . ..++..+.+ +.+|.+++ ..||++..+.+|...|+|+.++ .|++ +++++|+++
T Consensus 119 ~~~~-~~vv~N~~~~~~~-~----~~~~~~~~l-~~~g~~v~~~~Ip~~~~~~~a~~~g~~v~~~~~p~~~~~~~~~~~l 191 (209)
T 3cwq_A 119 GNNR-FRILLTIIPPYPS-K----DGDEARQLL-TTAGLPLFKRGIKRYSAFQKASLNGVVVSEVSDSKAGIAWSDYKAT 191 (209)
T ss_dssp CSSS-EEEEECSBCCTTS-C----HHHHHHHHH-HHTTCCBCSSCCBCCTHHHHHHHHTSCTTTSSSTTHHHHHHHHHHH
T ss_pred cCCC-EEEEEEecCCccc-h----HHHHHHHHH-HHcCCchhhccCCCcHHHHHHHHcCCCHHHhCCccchhHHHHHHHH
Confidence 555 8999999654320 1 011233334 44888877 6899999999999999999999 9999 999999999
Q ss_pred HHHHHHHHHHhhh
Q 009574 414 GVCVVQQCAKIRQ 426 (532)
Q Consensus 414 a~~i~~~~~~~~~ 426 (532)
+++|.+++...+.
T Consensus 192 ~~el~~~~~~~~~ 204 (209)
T 3cwq_A 192 GKEIVEEILTLEH 204 (209)
T ss_dssp HHHHHHHHTSTTT
T ss_pred HHHHHHHHHhhhh
Confidence 9999987765543
No 19
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.94 E-value=4.3e-28 Score=242.43 Aligned_cols=223 Identities=17% Similarity=0.114 Sum_probs=155.7
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCc-EEEec
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGV-KLVSF 255 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l-~vl~~ 255 (532)
|+++|+|+|+||||||||+|+|||..||++|+||++||+|+..+++..+++....+.... . .....++ +++|+
T Consensus 3 M~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~~~~~~~~--~----~~~~~~l~~vl~~ 76 (286)
T 2xj4_A 3 ETRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRAWLDNK--K----IELPEPLALNLSD 76 (286)
T ss_dssp -CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHHH--T----CCCCCCEEECSSS
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCChhHhHhc--c----ccCCCchheEeeC
Confidence 678999999999999999999999999999999999999994456666665433211100 0 0112467 77774
Q ss_pred CC--CCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHH
Q 009574 256 GF--SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRM 333 (532)
Q Consensus 256 ~~--~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~ 333 (532)
+. ...... ......+.++++.+. +.||||||||||+.+...... +..+|.+++|+.|+..++..+.++++.
T Consensus 77 ~~~~~~~~~~----~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~~~~~~--l~~aD~viiv~~~~~~~~~~~~~~~~~ 149 (286)
T 2xj4_A 77 NDVALAERPE----EEQVAGFEAAFARAM-AECDFILIDTPGGDSAITRMA--HGRADLVVTPMNDSFVDFDMLGTVDPV 149 (286)
T ss_dssp CHHHHTTSCH----HHHHHHHHHHHHHHH-HHCSEEEEECCSSCCHHHHHH--HHTCSEEEEEEESSHHHHTTTEEECTT
T ss_pred CCCCCcChhh----hhhHHHHHHHHHHHH-hcCCEEEEcCCCCccHHHHHH--HHHCCEEEEEEcCCccHHHHHHHHHHH
Confidence 21 111111 112335566666554 789999999999987654443 567899999999999888765544433
Q ss_pred -------------H---H-------cCC-CCEEEEEEecccccCCCccccccCCchHHHHHH---HhCCCcEEeccCchh
Q 009574 334 -------------F---S-------KLK-VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQ---QFGIPHLFDLPIRPT 386 (532)
Q Consensus 334 -------------l---~-------~~~-~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~---~~g~~~l~~IP~~~~ 386 (532)
+ + ..+ .+ +++|+||++.... . ..++..+.+.+ .+|.++.+.||++..
T Consensus 150 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~vV~N~~~~~~~-~----~~~~~~~~l~~~~~~~g~~~~~~Ip~~~~ 223 (286)
T 2xj4_A 150 TLELTKPSLYSLTVWEGRKQRALSGQRQAMD-WVVLRNRLATTEA-R----NRKRLEDRLNALAKRVGFRIGPGLRDRVI 223 (286)
T ss_dssp TCCEEEECHHHHHHHHHHHHHHHHCSSCCCE-EEEEEECCTTCCG-G----GHHHHHHHHHHHHHHHCCEEEECCCCCHH
T ss_pred hhhccccchhhhhhhcchhhhhhccCCcccc-EEEEEeeecCCCc-c----hhHHHHHHHHHHHHHcCCccCCCCCchHH
Confidence 3 2 113 33 6899999654320 1 01122333333 488766788999999
Q ss_pred hhhcccCCCceEEeCC----------CCHHHHHHHHHHHHHH
Q 009574 387 LSASGDSGMPEVAADP----------CGEVANTFQDLGVCVV 418 (532)
Q Consensus 387 i~~a~~~g~pv~~~~p----------~s~~a~~~~~La~~i~ 418 (532)
+.+|...|+|++++.| .++++++|++|+++|.
T Consensus 224 ~~~a~~~g~~v~~~~~~~~~~~~~~~~s~~~~~~~~la~~l~ 265 (286)
T 2xj4_A 224 YRELFPFGLTIADLSPQVRPVPVSLQHLAARQELRALMHSLG 265 (286)
T ss_dssp HHHHGGGTCCGGGCBTTBCCSCCCSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHhCccccccccccccchHHHHHHHHHHHhC
Confidence 9999999999999998 8899999999999885
No 20
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=99.92 E-value=1e-24 Score=217.42 Aligned_cols=172 Identities=17% Similarity=0.212 Sum_probs=134.6
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc------ccccCCCCCceeecccCC
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYLG 249 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~------~~~~~~~~~~i~~~~~~~ 249 (532)
+.+++|+|+|+|||+||||+|+|||..||+.|+||+|||+|++.+++..+|+.+.. +.......+.+.+...+|
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 169 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAK 169 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCEECSSTT
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHheeccCCCC
Confidence 34689999999999999999999999999999999999999999999888887543 222234456677777789
Q ss_pred cEEEecCCCCC-cccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHH
Q 009574 250 VKLVSFGFSGQ-GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 328 (532)
Q Consensus 250 l~vl~~~~~~~-~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~ 328 (532)
++++|++.... ....+... .+.++++.+. +.||||||||||........ .....+|.+++|+.++..+...+.
T Consensus 170 l~vl~~g~~~~~~~ell~~~----~l~~ll~~l~-~~yD~VIIDtpp~~~~~da~-~l~~~aD~vllVv~~~~~~~~~~~ 243 (286)
T 3la6_A 170 FDLIPRGQVPPNPSELLMSE----RFAELVNWAS-KNYDLVLIDTPPILAVTDAA-IVGRHVGTTLMVARYAVNTLKEVE 243 (286)
T ss_dssp EEEECCCSCCSCHHHHHTSH----HHHHHHHHHH-HHCSEEEEECCCTTTCTHHH-HHTTTCSEEEEEEETTTSBHHHHH
T ss_pred EEEEeCCCCCCCHHHHhchH----HHHHHHHHHH-hCCCEEEEcCCCCcchHHHH-HHHHHCCeEEEEEeCCCCcHHHHH
Confidence 99999876533 22333333 4455555544 78999999999976532211 113357999999999999999999
Q ss_pred HHHHHHHcCCCCEEEEEEecccccC
Q 009574 329 KGVRMFSKLKVPCIAVVENMCHFDA 353 (532)
Q Consensus 329 ~~i~~l~~~~~~~~gvV~N~~~~~~ 353 (532)
++++.+++.+.+++|+|+|++....
T Consensus 244 ~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 244 TSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp HHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred HHHHHHHhCCCCEEEEEEcCccccc
Confidence 9999999999999999999976443
No 21
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=99.92 E-value=2.3e-25 Score=186.07 Aligned_cols=92 Identities=16% Similarity=0.229 Sum_probs=75.8
Q ss_pred cccceeecCccceEEEEecCCCceEeecchhhhccCCCCCcccCCCCcccccCCCCCCCceeeEEEEecCeeEEEEcCCC
Q 009574 428 VSTAVIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDG 507 (532)
Q Consensus 428 vs~~v~~d~~~~~l~i~~~d~~~~~~i~~~~LR~~c~ca~c~~~~t~~~~~~~~~~~~~i~~~~~~~~g~yal~i~w~dg 507 (532)
.|+.+.+++..+.+.|.|+|+ ..+.|++.|||++||||+|+++.|+||+ +.++|.||.|.+++++|||+|+|.|+||
T Consensus 8 ~P~~i~l~~~~~~L~v~w~DG-~~~~~~~~wLRd~c~ca~c~~~~t~qr~--l~~~~~~v~~~~i~~~g~yal~i~wsDG 84 (101)
T 3luu_A 8 QPLEIRPLMISRVMEVDWADG-HTSRLTFEHLRVECPCAECKGHTPDQAQ--IVTGKEHVSVVEVVPVGHYAVQLHFSDG 84 (101)
T ss_dssp CEEEEEEETTTTEEEEEETTS-CEEEEEHHHHHHTCCCC----------C--CCCCCTTCCEEEEEEETTTEEEEEETTS
T ss_pred CCeEEEEeCCCCEEEEEeCCC-CEEEECHHHHHhhCCChhhcCccCCccc--cccCCCCcceeEEEECCCCeEEEEECCC
Confidence 577788888889999999976 6888999999999999999999999997 5689999999999999999999999999
Q ss_pred C-cccCChHHHHhchh
Q 009574 508 F-SQIAPYDQLQTMER 522 (532)
Q Consensus 508 h-~~~y~~~~L~~~~~ 522 (532)
| +|+|+|+||+++++
T Consensus 85 H~~s~Y~~~~L~~~~~ 100 (101)
T 3luu_A 85 HNTGIFTWEYLRRLDA 100 (101)
T ss_dssp CCCCEEEHHHHHHHTT
T ss_pred CceeEECHHHHHHhhh
Confidence 9 99999999999874
No 22
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=99.91 E-value=3.5e-24 Score=212.11 Aligned_cols=171 Identities=23% Similarity=0.266 Sum_probs=129.5
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc------ccccCCCCCceeecccCC
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYLG 249 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~------~~~~~~~~~~i~~~~~~~ 249 (532)
+.+++|+|+|.|||+||||+|+|||..||+.|+||++||+|++.+++..+|+.... +.+.....+.+.+...+|
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~ 159 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIED 159 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSSTT
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCCC
Confidence 34689999999999999999999999999999999999999999998888886543 111112233455555689
Q ss_pred cEEEecCCCCCc-ccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHH
Q 009574 250 VKLVSFGFSGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 328 (532)
Q Consensus 250 l~vl~~~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~ 328 (532)
++++|++..... ...+... .+.++++.+. +.||||||||||......... ....+|.+++|+.++..+...+.
T Consensus 160 l~vl~~g~~~~~~~ell~~~----~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~~-l~~~aD~vilVv~~~~~~~~~~~ 233 (271)
T 3bfv_A 160 LDVLTSGPIPPNPSELITSR----AFANLYDTLL-MNYNFVIIDTPPVNTVTDAQL-FSKFTGNVVYVVNSENNNKDEVK 233 (271)
T ss_dssp EEEECCCSCCSCHHHHHTSH----HHHHHHHHHH-HHCSEEEEECCCTTTCSHHHH-HHHHHCEEEEEEETTSCCHHHHH
T ss_pred EEEEECCCCCCCHHHHhChH----HHHHHHHHHH-hCCCEEEEeCCCCchHHHHHH-HHHHCCEEEEEEeCCCCcHHHHH
Confidence 999998754332 2223332 4455555554 789999999999764321111 12246999999999999999999
Q ss_pred HHHHHHHcCCCCEEEEEEeccccc
Q 009574 329 KGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 329 ~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
++++.+++.+.+++|+|+|+++..
T Consensus 234 ~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 234 KGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HHHHHHHTTTCEEEEEEEEEECC-
T ss_pred HHHHHHHhCCCCEEEEEEeCCcCC
Confidence 999999999999999999997643
No 23
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.90 E-value=1.1e-23 Score=211.47 Aligned_cols=172 Identities=17% Similarity=0.167 Sum_probs=130.5
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccc------ccccCCCCCceeecccCC
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYLG 249 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~------~~~~~~~~~~i~~~~~~~ 249 (532)
+.+++|+|+|.|||+||||+|+|||..||+.|+||++||+|++.+++..+|+.... +.+.....+.+.+...+|
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~ 181 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGG 181 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTTT
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCCC
Confidence 34689999999999999999999999999999999999999998898888876542 111112233455556689
Q ss_pred cEEEecCCCCCcc-cccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHH
Q 009574 250 VKLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 328 (532)
Q Consensus 250 l~vl~~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~ 328 (532)
++++|++...... .++.. ..+.++++.+. +.||||||||||+........ ....+|.+++|+.++..+...+.
T Consensus 182 l~vl~~g~~~~~~~ell~~----~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~~-l~~~ad~vilV~~~~~~~~~~~~ 255 (299)
T 3cio_A 182 FDVITRGQVPPNPSELLMR----DRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAAV-VGRSVGTSLLVARFGLNTAKEVS 255 (299)
T ss_dssp EEEECCCSCCSCHHHHHTS----HHHHHHHHHHH-HHCSEEEEECCCTTTCTHHHH-HGGGCSEEEEEEETTTSCTTHHH
T ss_pred EEEEECCCCCCCHHHHhCH----HHHHHHHHHHH-hCCCEEEEcCCCCchhHHHHH-HHHHCCEEEEEEcCCCChHHHHH
Confidence 9999987543322 22333 34555555554 789999999999765221111 12357999999999999999999
Q ss_pred HHHHHHHcCCCCEEEEEEecccccC
Q 009574 329 KGVRMFSKLKVPCIAVVENMCHFDA 353 (532)
Q Consensus 329 ~~i~~l~~~~~~~~gvV~N~~~~~~ 353 (532)
+.++.+++.+.+++|+|+|++....
T Consensus 256 ~~~~~l~~~~~~~~GvVlN~~~~~~ 280 (299)
T 3cio_A 256 LSMQRLEQAGVNIKGAILNGVIKRA 280 (299)
T ss_dssp HHHHHHHHTTCCCCCEEEEECCCCC
T ss_pred HHHHHHHhCCCCeEEEEEeCCccCC
Confidence 9999999999999999999976543
No 24
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.89 E-value=1.6e-23 Score=212.93 Aligned_cols=207 Identities=16% Similarity=0.218 Sum_probs=132.5
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccc--cc-------cCCCCCceeec--
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL--LE-------MNPEKRTIIPT-- 245 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~--~~-------~~~~~~~i~~~-- 245 (532)
.|++|+|+|+||||||||+|+|||.+||++|+||++||+|+ .++++.+|+.+... .. ...........
T Consensus 12 gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~~~l~~~l~~~~~~~~~~v~~~l~~~~~d~~~~~~~~~ 90 (324)
T 3zq6_A 12 GKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP-AHSLSDSLEREIGHTPTKITENLYAVEIDPEVAMEEYQ 90 (324)
T ss_dssp TBCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS-SCCHHHHHTSCCCSSCEEEETTEEEEECCHHHHHHHHH
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC-CcCHHHHhCCcCCCCCccCCCCceeeccChHHHHHHHH
Confidence 35899999999999999999999999999999999999999 45777777754210 00 00000000000
Q ss_pred ---ccCCcEEEecCCCCC-----cccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh-hhhh-----------
Q 009574 246 ---EYLGVKLVSFGFSGQ-----GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-LTLC----------- 305 (532)
Q Consensus 246 ---~~~~l~vl~~~~~~~-----~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~-~~~~----------- 305 (532)
......+++.+.... .....++......+.++.+.+.+.+||||||||||+..... +.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPt~~~l~lL~~p~~~~~~~~~l~ 170 (324)
T 3zq6_A 91 AKLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRYMTTDEYDIVIFDTAPTGHTLRLLSFPEIMDSWVGKMI 170 (324)
T ss_dssp HHC---------------------CTTSTTHHHHHHHHHHHHHHHHCCCSEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchhhhHHHHHHhccCCChHHHHHHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhHHHHHHHHHHHH
Confidence 000011233221100 11123344334445555555445899999999999421100 0000
Q ss_pred ---------------------------------------------hh--cCCCeEEEEeCCCcchHHHHHHHHHHHHcCC
Q 009574 306 ---------------------------------------------QV--VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK 338 (532)
Q Consensus 306 ---------------------------------------------~~--~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~ 338 (532)
.+ ...+.+++|++|+..++.++.+.++.+++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~~~~vlV~~p~~~~~~~~~~~~~~l~~~g 250 (324)
T 3zq6_A 171 KIRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMSIYESERAMKALEKYS 250 (324)
T ss_dssp HHHHHHHHHHTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcccHHHHHHHHHHHHHHCC
Confidence 01 1136899999999999999999999999999
Q ss_pred CCEEEEEEecccccCC-----CccccccCCchHHHHHHHhCCCcEEeccCch
Q 009574 339 VPCIAVVENMCHFDAD-----GKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 385 (532)
Q Consensus 339 ~~~~gvV~N~~~~~~~-----~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~ 385 (532)
+++.|+|+||+.+... ..++ ..+.+.++++.+.++...++.||..+
T Consensus 251 i~v~gvV~N~~~~~~~~~~~~~~~~-~~~~~~l~~i~~~~~~~~~~~iPl~~ 301 (324)
T 3zq6_A 251 IHADGVIVNQVLPEESDCEFCNARR-KLQQERLKQIREKFSDKVVAEVPLLK 301 (324)
T ss_dssp CCEEEEEEEEECCSCCCSHHHHHHH-HHHHHHHHHHHHHTTTSEEEEEECCS
T ss_pred CCccEEEEcCCccccCCChHHHHHH-HHHHHHHHHHHHHcCCCcEEEecCCC
Confidence 9999999999876521 1111 22346788899999988999999754
No 25
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=99.89 E-value=5.4e-24 Score=218.41 Aligned_cols=202 Identities=20% Similarity=0.233 Sum_probs=136.4
Q ss_pred cCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEe
Q 009574 175 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVS 254 (532)
Q Consensus 175 ~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~ 254 (532)
.+.|++|+|+|+||||||||+|+|||..||++|+||++||+|++ ++++.+|+.+....... ....+++....
T Consensus 22 ~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~-~~l~~~l~~~~~~~~~~-------v~g~~~l~~~~ 93 (349)
T 3ug7_A 22 KKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA-HSLRDIFEQEFGHEPTK-------VKGYDNLYVVE 93 (349)
T ss_dssp SSCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT-CHHHHHHCSCCCSSCEE-------CTTCSSEEEEE
T ss_pred ccCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC-CCHHHHhCCCCCcCccc-------cccccceeeec
Confidence 34578999999999999999999999999999999999999995 57777776542110000 00012222221
Q ss_pred cCCC---------------------C--C----cccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhh-hhhh
Q 009574 255 FGFS---------------------G--Q----GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQ 306 (532)
Q Consensus 255 ~~~~---------------------~--~----~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~-~~~~ 306 (532)
.... . . .....++......+.++.+.+.+.+||||||||||+.....+ .+..
T Consensus 94 id~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~pg~~e~~~~~~l~~~~~~~~yD~VIiDtpPt~~tlrlL~~p~ 173 (349)
T 3ug7_A 94 IDPQKAMEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTGHTLRFLGMPE 173 (349)
T ss_dssp CCHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHCCSCSEEEECSCCCTTGGGGGGHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhccCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCChHHHHHHhhHH
Confidence 1100 0 0 000122333333444555544457999999999995432111 0000
Q ss_pred ------------------------------------------------------------hcCCCeEEEEeCCCcchHHH
Q 009574 307 ------------------------------------------------------------VVPLTAAVIVTTPQKLAFID 326 (532)
Q Consensus 307 ------------------------------------------------------------~~~~d~viiV~~p~~~s~~~ 326 (532)
-...+.+++|++|+..++.+
T Consensus 174 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~p~~~~~~e 253 (349)
T 3ug7_A 174 VMDKYMTKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLVVIPEEMSILE 253 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-------CHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCccHHHH
Confidence 01147899999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEEEecccccCC-----CccccccCCchHHHHHHHhCCCcEEeccCch
Q 009574 327 VAKGVRMFSKLKVPCIAVVENMCHFDAD-----GKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 385 (532)
Q Consensus 327 ~~~~i~~l~~~~~~~~gvV~N~~~~~~~-----~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~ 385 (532)
+.+.++++++.++++.|+|+||+.+... ..++ ...++.++++.+.++.+.++.||.++
T Consensus 254 ~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~-~~~~~~l~~i~~~~~~~~l~~iPl~~ 316 (349)
T 3ug7_A 254 SERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARR-ELQLKRLEMIKEKFGDKVIAYVPLLR 316 (349)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHH-HHHHHHHHHHHHHSTTSEEEEEECCS
T ss_pred HHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHH-HHHHHHHHHHHHHcCCCcEEEecCCC
Confidence 9999999999999999999999876521 1111 12356788999999999999999865
No 26
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=99.89 E-value=9e-24 Score=218.92 Aligned_cols=197 Identities=18% Similarity=0.187 Sum_probs=134.0
Q ss_pred cCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccc--c----ccC--------CCCC
Q 009574 175 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL--L----EMN--------PEKR 240 (532)
Q Consensus 175 ~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~--~----~~~--------~~~~ 240 (532)
.+.+++|+|+|+||||||||+|+|||..||++|+||++||+| ..++++.++|.+... . ... ...+
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D-~~~~l~~~lg~~~~~~l~d~l~~~~~~~~~~~~~l~~ 218 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE-QCGTTDVFFQAEGNATMSDVIYSLKSRKANLLLKLES 218 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC-TTCCHHHHCCCSCSCCHHHHHHHHHSCCSCHHHHHHH
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC-CCCCHHHHcCCCCCCCHHHHHhhhhcccccccccHHH
Confidence 356899999999999999999999999999999999999999 666888888876431 1 000 0112
Q ss_pred ceeecccCCcEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC
Q 009574 241 TIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ 320 (532)
Q Consensus 241 ~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~ 320 (532)
.+.+ ...|++++|++........+.......+++.+.. ++.||||||||||+.+.....+ +..+|.+++|++|+
T Consensus 219 ~i~~-~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~---~~~yD~VIID~p~~~~~~~~~~--l~~aD~vivv~~~~ 292 (373)
T 3fkq_A 219 CIKQ-SQEGVSYFSSTKVALDILEISYADIDTLIGNIQG---MDNYDEIIVDLPFSLEIEKLKL--LSKAWRIIVVNDGS 292 (373)
T ss_dssp TCEE-CTTSCEECCCCSSGGGGGGCCHHHHHHHHHHHHH---TSCCSEEEEECCCCCCHHHHHH--HTTCSEEEEEECCC
T ss_pred Hhhc-CCCCEEEecCCCChHhHHhCCHHHHHHHHHHHHh---cCCCCEEEEeCCCCCCHHHHHH--HHHCCEEEEEecCC
Confidence 2222 3479999998765444443444444444554432 3799999999999998765554 56789999999999
Q ss_pred cchHH---HHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhh
Q 009574 321 KLAFI---DVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTL 387 (532)
Q Consensus 321 ~~s~~---~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i 387 (532)
..+.. ++.+.++.+.. ..+ +++|.||+....+-. ...+++.+..++++++.||+|+..
T Consensus 293 ~~s~~~l~~~~~~l~~l~~-~~~-~~vv~N~~~v~~~~~-------~~~~~fl~~~~l~~lG~IP~D~~~ 353 (373)
T 3fkq_A 293 QLSNYKFMRAYESVVLLEQ-NDD-INIIRNMNMIYNKFS-------NKNSEMLSNISIKTIGGAPRYEHA 353 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTT-STT-CCCGGGEEEEECSCC-------TTTCCCCCSCSCEEEEECCCCTTC
T ss_pred chHHHHHHHHHHHHHHhcc-cCC-cEEEehhHHHHHHHH-------HHHHHHhhcCCccceeecCCCCCc
Confidence 98844 45555555544 222 667777653222110 111222234578899999998753
No 27
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=99.88 E-value=2.4e-23 Score=213.72 Aligned_cols=175 Identities=14% Similarity=0.111 Sum_probs=115.0
Q ss_pred cCcceEEEEEeCcCCCcHHHHHHHHHHHHH--HCCCcEEEEEcCCCCCCCCCCCCCcccc-----------cccCCCCC-
Q 009574 175 QKISNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYGPSLPTMVSPENRL-----------LEMNPEKR- 240 (532)
Q Consensus 175 ~~~~kiIav~s~KGGvGKTTlA~nLA~~LA--~~G~rVllID~D~~~~s~~~~lg~~~~~-----------~~~~~~~~- 240 (532)
.+..++|+|+|+||||||||+|+|||.+|| +.|+||++||+|++ ++++.+||.+... ........
T Consensus 14 ~~~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~-~~l~~~lg~~~~~~~~~v~gl~~l~~~~id~~~ 92 (354)
T 2woj_A 14 TSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA-HNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSA 92 (354)
T ss_dssp TCSSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS-CCHHHHHTSCCCSSCEECTTCSSEEEEECCHHH
T ss_pred cCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC-CCHHHHhCCCCCCCceeecCCCceEEEecCHHH
Confidence 344579999999999999999999999999 89999999999996 7888887765320 00000000
Q ss_pred ceeec----c-----------cCCcEEEecCCCCCcc-cccCCchHHHHHHHHHHhcccC------CCCEEEEcCCC-CC
Q 009574 241 TIIPT----E-----------YLGVKLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWG------ELDYLVIDMPP-GT 297 (532)
Q Consensus 241 ~i~~~----~-----------~~~l~vl~~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~------~yD~VIIDtpp-~~ 297 (532)
.+... . ..++++++.+....+. ...++......+.++++.+.+. .|||||||||| |.
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~g~~l~~l~~~~~~~el~~~~pg~~e~~~l~~l~~~l~~~~~~~~~~yD~IIiDtpPtG~ 172 (354)
T 2woj_A 93 ALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGALADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGH 172 (354)
T ss_dssp HHHHHHTC--------------------CCSSHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHTSCCSCSEEEEECCCHHH
T ss_pred HHHHHHHHHHhhcccccccchhhhhhhccchhHHHHHhcCCCChHHHHHHHHHHHHHhcccccccCCCCEEEECCCCchH
Confidence 00000 0 0146666532111111 1234444445667777666532 79999999999 43
Q ss_pred Chhhh---------------------hh-----------------------------hhhcCCCeEEEEeCCCcchHHHH
Q 009574 298 GDIQL---------------------TL-----------------------------CQVVPLTAAVIVTTPQKLAFIDV 327 (532)
Q Consensus 298 ~~~~~---------------------~~-----------------------------~~~~~~d~viiV~~p~~~s~~~~ 327 (532)
....+ .+ .....+|.+++|++|+..++.++
T Consensus 173 tLrlL~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~pe~~si~ea 252 (354)
T 2woj_A 173 TLRFLQLPNTLSKLLEKFGEITNKLGPMLNSFMGAGNVDISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYET 252 (354)
T ss_dssp HHHHHTHHHHHHHHHHCC---------------------CHHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCcchHHHH
Confidence 00000 00 00015688999999999999999
Q ss_pred HHHHHHHHcCCCCEEEEEEeccc
Q 009574 328 AKGVRMFSKLKVPCIAVVENMCH 350 (532)
Q Consensus 328 ~~~i~~l~~~~~~~~gvV~N~~~ 350 (532)
.++++.++..++++.|+|+||+.
T Consensus 253 ~r~~~~L~~~g~~~~gvVvN~v~ 275 (354)
T 2woj_A 253 ERLIQELISYDMDVNSIIVNQLL 275 (354)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEEC
T ss_pred HHHHHHHHHcCCCCCEEEEecCC
Confidence 99999999999999999999987
No 28
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=99.87 E-value=1.4e-22 Score=174.55 Aligned_cols=88 Identities=23% Similarity=0.428 Sum_probs=80.8
Q ss_pred cccceeecCccceEEEEecCCCceEeecchhhhccCCCCCcccCCCCcccccCCCCCCCceeeEEEEecCeeEEEEcCCC
Q 009574 428 VSTAVIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDG 507 (532)
Q Consensus 428 vs~~v~~d~~~~~l~i~~~d~~~~~~i~~~~LR~~c~ca~c~~~~t~~~~~~~~~~~~~i~~~~~~~~g~yal~i~w~dg 507 (532)
.|+.+.++...+.+.|.|. + ..+.|++.|||++||||+|+++ +||+++.. +.+|.+.+++++|||||+|.|+||
T Consensus 4 ~P~~i~l~~~~~~L~v~w~-G-~~~~~~~~wLRd~Cpcaec~~~--~qr~l~~~--~~dv~i~~i~~~G~yaL~I~wsDG 77 (124)
T 2l6p_A 4 IPSAIQLHKASKTLTLRYG-E-DSYDLPAEFLRVHSPSAEVQGH--GNPVLQYG--KLNVGLVGVEPAGQYALKLSFDDG 77 (124)
T ss_dssp CCSCCBCCTTTCEEEEEET-T-EEEEEEHHHHHHTCCCSSCCSC--CCCCCCCS--CTTCCEEEEEECSSSCEEEEETTS
T ss_pred CCeEEEEecCCCEEEEEEC-C-EEEEeCHHHHHhcCCCcccCCC--CccccccC--CCCcceEEEEEcCCceEEEEECCC
Confidence 5677888888889999999 5 7889999999999999999997 99999875 589999999999999999999999
Q ss_pred C-cccCChHHHHhch
Q 009574 508 F-SQIAPYDQLQTME 521 (532)
Q Consensus 508 h-~~~y~~~~L~~~~ 521 (532)
| +|+|+|+||++++
T Consensus 78 H~sgiY~~~~L~~l~ 92 (124)
T 2l6p_A 78 HDSGLFTWDYLYELA 92 (124)
T ss_dssp CCCCCCTTHHHHHHH
T ss_pred CcceEECHHHHHHhh
Confidence 9 7999999999985
No 29
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=99.87 E-value=1.1e-22 Score=176.53 Aligned_cols=89 Identities=19% Similarity=0.333 Sum_probs=80.2
Q ss_pred cccceeecCccceEEEEecCCCceEeecchhhhccCCCCCcccCCCCcccccCCCCCCCceeeEEEEecCeeEEEEcCCC
Q 009574 428 VSTAVIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDG 507 (532)
Q Consensus 428 vs~~v~~d~~~~~l~i~~~d~~~~~~i~~~~LR~~c~ca~c~~~~t~~~~~~~~~~~~~i~~~~~~~~g~yal~i~w~dg 507 (532)
.|+.+.++...+.+.|.|.|+ ..+.|++.|||++||||+|+++. ||+++. .+.+|.+.+++++|+|+|+|.|+||
T Consensus 10 ~p~~i~l~~~~~~L~v~w~DG-~~~~~~~~wLRd~Cpcaec~~~~--qr~l~~--~~~dv~i~~i~~vG~yaL~I~wsDG 84 (132)
T 2l6n_A 10 KVTGLKLKRKSRQLEISFDNG-QQFTLSCELLRVYSPSAEVHGHG--NPVLVT--HKKNVNINAITPVGNYAVKLVFDDG 84 (132)
T ss_dssp CEEEEEEEGGGTEEEEEETTS-CEEEEEHHHHHHSCSCSSSSSSS--CCCCCC--CCSSCCEEEEEEETTTEEEEEETTT
T ss_pred CCeeEEEecCCCEEEEEECCC-CEEEeCHHHHHhcCCCcccCCcc--cccccc--CCCCcceEEEEecCCceEEEEeCCC
Confidence 467788888888999999976 67889999999999999999986 888886 4689999999999999999999999
Q ss_pred Cc-ccCChHHHHhch
Q 009574 508 FS-QIAPYDQLQTME 521 (532)
Q Consensus 508 h~-~~y~~~~L~~~~ 521 (532)
|. |+|+|+||++++
T Consensus 85 H~SGiYs~~~L~~l~ 99 (132)
T 2l6n_A 85 HDTGLYSWKVLYDLA 99 (132)
T ss_dssp BCCCCEEHHHHHHHH
T ss_pred CccCEECHHHHHHHh
Confidence 95 599999999985
No 30
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=99.86 E-value=9.7e-22 Score=199.78 Aligned_cols=202 Identities=17% Similarity=0.160 Sum_probs=127.7
Q ss_pred cCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEe
Q 009574 175 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVS 254 (532)
Q Consensus 175 ~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~ 254 (532)
.+.+++|+|+|+||||||||+|+|||.+||+.|+||++||+|++. ++..+++......... ....+|++.+.
T Consensus 12 ~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~-~l~~~l~~~~~~~~~~-------v~~~~~L~~~~ 83 (334)
T 3iqw_A 12 DQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAH-NLSDAFSQKFGKEARL-------VEGFDNLYAME 83 (334)
T ss_dssp HCTTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSC-HHHHHHTSCCCSSCEE-------CTTCSSEEEEE
T ss_pred cCCCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCC-ChhHHhccccCCCcee-------ecCCCCceeee
Confidence 344567779999999999999999999999999999999999876 4555555321100000 00001111111
Q ss_pred c------------------------CCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh-hhhh----
Q 009574 255 F------------------------GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-LTLC---- 305 (532)
Q Consensus 255 ~------------------------~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~-~~~~---- 305 (532)
. +........+++......+.++.+.+.+.+||||||||||...... +.+.
T Consensus 84 id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPtg~tLrlL~lp~~l~ 163 (334)
T 3iqw_A 84 IDPNGSMQDLLAGQTGDGDAGMGGVGVMQDLAYAIPGIDEAMSFAEVLKQVNSLSYETIVFDTAPTGHTLRFLQFPTVLE 163 (334)
T ss_dssp CCC--------------------------------CCHHHHHHHHHHHHHHHTSSCSEEEEECCCHHHHHHHHTHHHHC-
T ss_pred cCHHHHHHHHHHHhhcccccccccchhhHHhhcCCCCHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 0 0000111123444444455666655556899999999999211100 0000
Q ss_pred ------------------------------------------------------hhcCCCeEEEEeCCCcchHHHHHHHH
Q 009574 306 ------------------------------------------------------QVVPLTAAVIVTTPQKLAFIDVAKGV 331 (532)
Q Consensus 306 ------------------------------------------------------~~~~~d~viiV~~p~~~s~~~~~~~i 331 (532)
.-...+.+++|++|+..++.++.+++
T Consensus 164 ~~l~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~ea~r~~ 243 (334)
T 3iqw_A 164 KALAKVSQLSGQYGSLLNGILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETERMI 243 (334)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHhhCCCCeeEEEEECCCccHHHHHHHHH
Confidence 00124579999999999999999999
Q ss_pred HHHHcCCCCEEEEEEecccccCC--Cc----cccccCCchHHHHHHHhCC-CcEEeccCc
Q 009574 332 RMFSKLKVPCIAVVENMCHFDAD--GK----RYYPFGRGSGSQVVQQFGI-PHLFDLPIR 384 (532)
Q Consensus 332 ~~l~~~~~~~~gvV~N~~~~~~~--~~----~~~~~~~~~~~~l~~~~g~-~~l~~IP~~ 384 (532)
+.+++.|+++.|+|+||+.+... .. ..+..++..++++.+.|+. ..+..+|..
T Consensus 244 ~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~~~~pl~ 303 (334)
T 3iqw_A 244 QELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDEEFNVVKMPLL 303 (334)
T ss_dssp HHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECC
T ss_pred HHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhccCCCCEEEecCC
Confidence 99999999999999999875321 10 1123355677888888875 456677753
No 31
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=99.85 E-value=2.8e-22 Score=204.04 Aligned_cols=206 Identities=17% Similarity=0.128 Sum_probs=131.1
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccc--cCCCCCce----ee-----c
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE--MNPEKRTI----IP-----T 245 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~--~~~~~~~i----~~-----~ 245 (532)
..++|+|+|+||||||||+|+|||..||++|+||++||+|++ ++++.+||.+..... ........ .+ .
T Consensus 17 ~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~-~~l~~~l~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~ 95 (329)
T 2woo_A 17 TSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA-HNLSDAFGTKFGKDARKVPGFDNLSAMEIDPNLSIQE 95 (329)
T ss_dssp TTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT-CHHHHHHSSCCCSSCEECTTCSSEEEEECCHHHHHHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC-cCHHHHhCCcCCCCCeeccCCCCeeEEecCHHHHHHH
Confidence 357889999999999999999999999999999999999998 677777665421000 00000000 00 0
Q ss_pred ccCC-----cE-EEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCC-CCChhhhhh--------------
Q 009574 246 EYLG-----VK-LVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPP-GTGDIQLTL-------------- 304 (532)
Q Consensus 246 ~~~~-----l~-vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp-~~~~~~~~~-------------- 304 (532)
...+ ++ +++... ..-...++++.....+.++.+.+.+++|||||||||| |.....+.+
T Consensus 96 ~~~~~~~~~l~~~l~~~l-~~l~~~~pg~~e~~~~~~~~~~l~~~~yD~ViiDtpPtg~~l~lL~~p~~~~~~l~~l~~~ 174 (329)
T 2woo_A 96 MTEQADQQNPNNPLSGMM-QDLAFTIPGIDEALAFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFPTVLEKALGKLGGL 174 (329)
T ss_dssp HHHTC--------CCHHH-HHHHTTSTTHHHHHHHHHHHHHHHHTCCSEEEEECCSSSCTTTGGGHHHHHHHHHHHHHTS
T ss_pred HHHHHhhhhHHHHhhHHH-HHHhcCCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 11 122000 0001123444444566777777766899999999999 332000000
Q ss_pred --------hh-------------------------------h--cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEE
Q 009574 305 --------CQ-------------------------------V--VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIA 343 (532)
Q Consensus 305 --------~~-------------------------------~--~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~g 343 (532)
.. + ...+.+++|++|+..++.++.++++.+++.++++.|
T Consensus 175 ~~~~~~~~~~l~~~~g~~~~~d~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~g 254 (329)
T 2woo_A 175 SSRFGPMINQMGSIMGVNANEQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETERMIQELTSYEIDTHN 254 (329)
T ss_dssp CSSCHHHHHHHHHHHC-----CCTTHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcchHHHHHHHHHHHHHCCCCCCE
Confidence 00 0 013579999999999999999999999999999999
Q ss_pred EEEecccccCC-Ccc----ccccCCchHHHHHHHhCCCcEEeccCc
Q 009574 344 VVENMCHFDAD-GKR----YYPFGRGSGSQVVQQFGIPHLFDLPIR 384 (532)
Q Consensus 344 vV~N~~~~~~~-~~~----~~~~~~~~~~~l~~~~g~~~l~~IP~~ 384 (532)
+|+||+.+... ... ....+++.++++.+.|+...+..||..
T Consensus 255 vVvN~~~~p~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~vP~~ 300 (329)
T 2woo_A 255 IVVNQLLLDPNTTCPQCMARRKMQQKYLAQIEELYEDFHVVKVPQV 300 (329)
T ss_dssp EEEEEECCCSSCCCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECC
T ss_pred EEEeCCcCcccccCHHHHHHHHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 99999874211 000 012244567788888875566778854
No 32
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=99.83 E-value=6.2e-21 Score=194.80 Aligned_cols=205 Identities=16% Similarity=0.156 Sum_probs=115.2
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHH--HCCCcEEEEEcCCCCCCCCCCCCCccc-----------ccccCCCCCce
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYGPSLPTMVSPENR-----------LLEMNPEKRTI 242 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA--~~G~rVllID~D~~~~s~~~~lg~~~~-----------~~~~~~~~~~i 242 (532)
+..+.|+|+|+||||||||+|+|||..|| +.|+||++||+|+++ ++..+||.+.. +..........
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~-~l~~~~~~~~~~~~~~v~~~~~L~~~~id~~~~ 93 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAH-NLSDAFCQKFGKDARKVEGLPNLSCMEIDPEAA 93 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSC-HHHHHHTSCCCSSCEEETTEEEEEEEECCC---
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCC-ChHHHhccccCCCceeccCCCCceEEeeCHHHH
Confidence 34456777789999999999999999999 899999999999764 56666664311 10000000000
Q ss_pred eeccc-----------CCcEEEecCCCCCcccccCCchHHHHHHHHHHhcccC------------CCCEEEEcCCCCCCh
Q 009574 243 IPTEY-----------LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWG------------ELDYLVIDMPPGTGD 299 (532)
Q Consensus 243 ~~~~~-----------~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~------------~yD~VIIDtpp~~~~ 299 (532)
..... .++..+. ......+++......+.++++.+.+. +||||||||||....
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~Pg~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~yD~VIiDtpPtg~t 169 (348)
T 3io3_A 94 MSDLQQQASQYNNDPNDPLKSMM----SDMTGSIPGIDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTGHT 169 (348)
T ss_dssp ------------------------------------------------------------------CCEEEEECSSHHHH
T ss_pred HHHHHHHHHhhcccccccHhHHh----HHhhcCCCCHHHHHHHHHHHHHHHhccccccccccccCCCCEEEEcCCCchHH
Confidence 00000 0011110 00011112222233455555554433 899999999993211
Q ss_pred hhh-hh--------------------------------------------------hhhcCCCeEEEEeCCCcchHHHHH
Q 009574 300 IQL-TL--------------------------------------------------CQVVPLTAAVIVTTPQKLAFIDVA 328 (532)
Q Consensus 300 ~~~-~~--------------------------------------------------~~~~~~d~viiV~~p~~~s~~~~~ 328 (532)
..+ .+ ..-...+.+++|++|+..++.++.
T Consensus 170 LrlL~lP~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~ea~ 249 (348)
T 3io3_A 170 LRFLQLPSTLEKLLSKFKDLSGKLGPMLSMMGGGQQQDIFEKLNEVQKNVSEVNEQFTNPELTTFICVCISEFLSLYETE 249 (348)
T ss_dssp HHHTC---------------------------------------------CHHHHHHTCTTTEEEEEEEESSHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHhCcCceEEEEEecCCccHHHHHH
Confidence 100 00 000123689999999999999999
Q ss_pred HHHHHHHcCCCCEEEEEEecccccC-C--Cc----cccccCCchHHHHHHHhCCCcEEeccCch
Q 009574 329 KGVRMFSKLKVPCIAVVENMCHFDA-D--GK----RYYPFGRGSGSQVVQQFGIPHLFDLPIRP 385 (532)
Q Consensus 329 ~~i~~l~~~~~~~~gvV~N~~~~~~-~--~~----~~~~~~~~~~~~l~~~~g~~~l~~IP~~~ 385 (532)
++++.+++.++++.|+|+||+.+.. . .. ..+..++..++++.+.|+...+..+|...
T Consensus 250 r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~~~pl~~ 313 (348)
T 3io3_A 250 RMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGELYEDYHLVKMPLLG 313 (348)
T ss_dssp HHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECCS
T ss_pred HHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHHHccCCCEEEecCCC
Confidence 9999999999999999999987643 1 00 11123556778888888766677777543
No 33
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.82 E-value=3.7e-20 Score=177.55 Aligned_cols=196 Identities=13% Similarity=0.048 Sum_probs=120.8
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCC-CCCccc----ccccCCCCCceeecccCCcEEE
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM-VSPENR----LLEMNPEKRTIIPTEYLGVKLV 253 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~-lg~~~~----~~~~~~~~~~i~~~~~~~l~vl 253 (532)
|+|+|+|+||||||||+|+|||.+|+++|+||+++| +++...... .+.... +........ .....+..++
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d--p~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~ 76 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK--PVASGSEKTPEGLRNSDALALQRNSSLQL---DYATVNPYTF 76 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC--SEEESCBCCTTSCBCHHHHHHHHTCSSCC---CHHHHCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc--ceecCCccCCCCcChHHHHHHHHHhCCCC---ChhhcccEEe
Confidence 689999999999999999999999999999999975 544322111 010000 000000000 0000011222
Q ss_pred ecCCCCC-cccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh---hhhhhhcC--CCeEEEEeCCCcchHHHH
Q 009574 254 SFGFSGQ-GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ---LTLCQVVP--LTAAVIVTTPQKLAFIDV 327 (532)
Q Consensus 254 ~~~~~~~-~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~---~~~~~~~~--~d~viiV~~p~~~s~~~~ 327 (532)
+.+.... .............+.++++.+. ++||||||||||+++... ...+.+.. .+.+++|+.++..++..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~ 155 (224)
T 1byi_A 77 AEPTSPHIISAQEGRPIESLVMSAGLRALE-QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHA 155 (224)
T ss_dssp SSCSCHHHHHHHHTCCCCHHHHHHHHHHHH-TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHH
T ss_pred CCCCCHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHH
Confidence 2111100 0000000112345556666554 789999999999886421 11111111 135889999999999999
Q ss_pred HHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchh
Q 009574 328 AKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPT 386 (532)
Q Consensus 328 ~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~ 386 (532)
.+.++.+++.+.++.|+|+||++... ...++..+.+.+.+|.++++.||++..
T Consensus 156 ~~~i~~l~~~~~~i~gvvlN~~~~~~------~~~~~~~~~l~~~~~~~vl~~Ip~~~~ 208 (224)
T 1byi_A 156 MLTAQVIQHAGLTLAGWVANDVTPPG------KRHAEYMTTLTRMIPAPLLGEIPWLAE 208 (224)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCSSCC------TTHHHHHHHHHHHSSSCEEEEECCCTT
T ss_pred HHHHHHHHHCCCcEEEEEEeCCCCch------hhHHHHHHHHHHHcCCCEEEECCCCcC
Confidence 99999998888999999999975432 122346778888899999999999874
No 34
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=99.82 E-value=1.5e-19 Score=185.70 Aligned_cols=266 Identities=16% Similarity=0.125 Sum_probs=163.2
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEe----
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVS---- 254 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~---- 254 (532)
+.|.++|+||||||||+|+|||..+|+.|+||++||+ +++ ++..+||...... .... .+|++.+.
T Consensus 2 ~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~~-~l~~~~~~~~~~~--------~~~v-~~~L~~~eid~~ 70 (374)
T 3igf_A 2 ALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AEP-VLPLLLEQTLTPD--------PQQI-APNLEVVQFQSS 70 (374)
T ss_dssp CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SCS-HHHHHHTSCCCSS--------CEEE-ETTEEEEECCHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CCC-ChHHhhCCCCCCC--------cccc-cccccccccCHH
Confidence 4566778999999999999999999999999999999 654 6666666431100 0000 11222221
Q ss_pred --------------------cCC---CCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhh---------
Q 009574 255 --------------------FGF---SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL--------- 302 (532)
Q Consensus 255 --------------------~~~---~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~--------- 302 (532)
.+. ........++......+.++.+...+.+||||||||||......+
T Consensus 71 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~el~~~Pg~~E~~~l~~~~~~~~~~~yD~VIvDtpPtg~tLrlL~lP~~l~~ 150 (374)
T 3igf_A 71 VLLERNWEEVKKLEAQYLRTPIIKEVYGQELVVLPGMDSALALNAIREYDASGKYDTIVYDGTGDAFTLRMLGLPESLSW 150 (374)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSSSSSCGGGCCCCTTHHHHHHHHHHHHHHHTTCCSEEEEECCCSHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccchhhhccCCCHHHHHHHHHHHHHHhccCCCEEEEeCCCChHHhhhhhhhHHHHH
Confidence 000 011112233433334455555555557999999999993211000
Q ss_pred --------------------------------------------------------hhhhhcCCCeEEEEeCCCcchHHH
Q 009574 303 --------------------------------------------------------TLCQVVPLTAAVIVTTPQKLAFID 326 (532)
Q Consensus 303 --------------------------------------------------------~~~~~~~~d~viiV~~p~~~s~~~ 326 (532)
....-.....+++|++|+..++.+
T Consensus 151 ~l~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~sl~e 230 (374)
T 3igf_A 151 YVRRFRQLFVNSDLGKTIAESPLIQPLISSFFNVNWTADNFAQPTNQVNNFLDKGKEALADPKRVAAFLVTTADPLEVVS 230 (374)
T ss_dssp HHHHTTSCC-----------------------------------CHHHHHHHHHHHHHHHCTTTEEEEEEECSCHHHHHH
T ss_pred HHHHHHHHHhhhccccccccchhhhhhhhhhccCCCchHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEECCCccHHHH
Confidence 000001125789999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEeCCCCHH
Q 009574 327 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEV 406 (532)
Q Consensus 327 ~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~s~~ 406 (532)
+.+.++.+++.|+++.|+|+|| .+ .++++.+.|+...+..+|.... +
T Consensus 231 a~r~~~~L~~~gi~v~gvVvN~--~~------------~l~~i~~~F~~~~v~~vpl~~~----------------e--- 277 (374)
T 3igf_A 231 VRYLWGSAQQIGLTIGGVIQVS--SQ------------TEGDLSAEFTPLSVTVVPDVTK----------------G--- 277 (374)
T ss_dssp HHHHHHHHHHHTCCEEEEEECC--CS------------CCCCCGGGSTTSCEEECCCCBT----------------T---
T ss_pred HHHHHHHHHHcCCCccEEEEcC--HH------------HHHHHHHhcCCCceEECCCCCh----------------h---
Confidence 9999999999999999999999 11 2344566676556777775321 0
Q ss_pred HHHHHHHHHHHHHHHH-HhhhccccceeecCccceEEEEecCC----------CceEeecchhhhccCCCCCcccCCCCc
Q 009574 407 ANTFQDLGVCVVQQCA-KIRQQVSTAVIYDKSIKAIKVKVPQS----------DEEFFLHPATVRRNDRSAQSVDEWTGD 475 (532)
Q Consensus 407 a~~~~~La~~i~~~~~-~~~~~vs~~v~~d~~~~~l~i~~~d~----------~~~~~i~~~~LR~~c~ca~c~~~~t~~ 475 (532)
.++++++.+ ..-. .. ...+.++.+++..+.+++.+|.- |+++.+.+.+.|++=+=|..
T Consensus 278 --~l~~l~~~l-~~p~~~~-~~~~~~~~i~~~~~~~~l~lP~~~~~~~~l~~~gdeL~v~~g~~rR~i~LP~~------- 346 (374)
T 3igf_A 278 --DWQPLIDAL-PNFVEQA-EQAPKPITIDTHNRQVRLFLPGFDKKQVKLTQYGPEVTVEAGDQRRNIFLPPA------- 346 (374)
T ss_dssp --BCHHHHHHC-CCHHHHH-HHSCCSEEEETTTTEEEEECTTCCGGGCEEEEETTEEEEEETTEEEEEECCTT-------
T ss_pred --HHHHHHHHh-cCccccc-cCCCCCEEEEeccEEEEEECCCCCHHHeEEEEECCeEEEEECCEeecccCCHH-------
Confidence 233333333 1111 11 12344566665566677776633 57888888888887443322
Q ss_pred ccccCCCCCCCceeeEEEEecCeeEEEEcCCCC
Q 009574 476 QKLQYTDVPEDIEPEEIRPMGNYAVSITWPDGF 508 (532)
Q Consensus 476 ~~~~~~~~~~~i~~~~~~~~g~yal~i~w~dgh 508 (532)
=..-.+.++...++ .|.|.|-+.|
T Consensus 347 --------L~~~~v~~A~~~~~-~L~i~~~~~~ 370 (374)
T 3igf_A 347 --------LSGRPITGAKFQNN-YLIISFLEHH 370 (374)
T ss_dssp --------TTTCCEEEEEEETT-EEEEEECCC-
T ss_pred --------HcCCCccccEEECC-EEEEEEehhc
Confidence 12345677888865 4999998766
No 35
>3o2g_A Gamma-butyrobetaine dioxygenase; gamma-butyrobetaine hydroxylase, 2-OXOG dioxygenase 1, oxidoreductase, structural genomics; HET: OGA NM2; 1.78A {Homo sapiens} PDB: 3ms5_A* 3n6w_A
Probab=99.72 E-value=2.7e-18 Score=178.09 Aligned_cols=87 Identities=17% Similarity=0.092 Sum_probs=80.7
Q ss_pred eeecCccceEEEEecCCCceEeecchhhhccCCCCCcccCCCCcccccCCCCCCCceeeEEEEecCeeEEEEcCCCCccc
Q 009574 432 VIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDGFSQI 511 (532)
Q Consensus 432 v~~d~~~~~l~i~~~d~~~~~~i~~~~LR~~c~ca~c~~~~t~~~~~~~~~~~~~i~~~~~~~~g~yal~i~w~dgh~~~ 511 (532)
+..+...+.+.|.|.|| .+..|++.|||+||||++|+++.|+||++++.++|.+|++.+++..| |+|+|.|+|||.|+
T Consensus 9 ~~~~~~~~~l~v~w~dG-~~~~~~~~wLRd~C~c~~c~~~~t~qr~~~~~~i~~~i~~~~~~~~~-~~l~i~w~dgH~s~ 86 (388)
T 3o2g_A 9 AEALDGAHLMQILWYDE-EESLYPAVWLRDNCPCSDCYLDSAKARKLLVEALDVNIGIKGLIFDR-KKVYITWPDEHYSE 86 (388)
T ss_dssp EEEETTTTEEEEEETTS-CEEEEEHHHHHHTCCSTTTEEGGGTEECCCGGGCCTTCCCSEEEECS-SEEEEECTTSCEEE
T ss_pred eeecCCCCEEEEEECCC-CeeeeCHHHHHhcCCCccccCccccccccCHhhcCcccccceEEeeC-CEEEEEecCCCceE
Confidence 44556778999999977 67789999999999999999999999999999999999999999998 89999999999999
Q ss_pred CChHHHHhc
Q 009574 512 APYDQLQTM 520 (532)
Q Consensus 512 y~~~~L~~~ 520 (532)
|+|+||++.
T Consensus 87 y~~~~L~~~ 95 (388)
T 3o2g_A 87 FQADWLKKR 95 (388)
T ss_dssp EEHHHHHHT
T ss_pred eCHHHHHhh
Confidence 999999986
No 36
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.72 E-value=3e-18 Score=187.91 Aligned_cols=205 Identities=19% Similarity=0.169 Sum_probs=123.0
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcc-cccc--cCCC------CCceeecc
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN-RLLE--MNPE------KRTIIPTE 246 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~-~~~~--~~~~------~~~i~~~~ 246 (532)
.++++|.|+++|||+||||+|+|||..|+++|+||++||+|+++ ++..+++... .+.. .... ...+.+..
T Consensus 324 ~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~~-~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~v~~~~ 402 (589)
T 1ihu_A 324 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAA-HLSMTLNGSLNNLQVSRIDPHEETERYRQHVLETK 402 (589)
T ss_dssp TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC------------CCEEEEECCHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCcc-cHhHHhcccCCCceeeecchHHHHHHHHHHHHHhh
Confidence 56789999999999999999999999999999999999999985 5666665421 1110 0000 00111111
Q ss_pred cCCcEEEecCCCCCcccccCCch--HHHHHHHHHHhcccCCCCEEEEcCCCCCC--------------------hhh--h
Q 009574 247 YLGVKLVSFGFSGQGRAIMRGPM--VSGVINQLLTTTEWGELDYLVIDMPPGTG--------------------DIQ--L 302 (532)
Q Consensus 247 ~~~l~vl~~~~~~~~~~~~~~~~--~~~~l~~ll~~~~~~~yD~VIIDtpp~~~--------------------~~~--~ 302 (532)
..++. ..+. ..-...+..+. ....+.++.+.+.+.+||||||||||+.. +.. .
T Consensus 403 ~~~l~--~~~~-~~~~~~~~~p~~~e~~~~~~l~~~~~~~~~D~vviD~~p~~~tl~ll~~p~~~~~~~~~~~~~~~~~~ 479 (589)
T 1ihu_A 403 GKELD--EAGK-RLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIAKKMGEKGHFT 479 (589)
T ss_dssp HTTCC--HHHH-HHHHHHTTSHHHHHHHHHHHHTTTGGGGGTSEEEESCCCCHHHHHHHHHC------------------
T ss_pred hccCC--hhhH-HHHHHHhcCCChHHHHHHHHHHHHHhccCCCEEEEcCCCCccHHHHHHhHHHHHHHHHHhcccchHHH
Confidence 11111 0000 00001122222 12345666655555689999999999732 100 0
Q ss_pred hhh-hh--cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCc-cc----cccCCchHHHHHHHhC
Q 009574 303 TLC-QV--VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGK-RY----YPFGRGSGSQVVQQFG 374 (532)
Q Consensus 303 ~~~-~~--~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~-~~----~~~~~~~~~~l~~~~g 374 (532)
... .+ ..++.+++|+.|+..++.++.++++.+++.++++.|+|+||+....... .+ ...+.+.++++.+.|+
T Consensus 480 ~~~~~l~d~~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 559 (589)
T 1ihu_A 480 TPMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQIESVKRQHA 559 (589)
T ss_dssp CCHHHHHCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTTSCCCCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHhcCCCCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhcC
Confidence 000 01 1458899999999999999999999999999999999999987653211 00 1123345677778887
Q ss_pred CCcEEeccCch
Q 009574 375 IPHLFDLPIRP 385 (532)
Q Consensus 375 ~~~l~~IP~~~ 385 (532)
.++ ..+|+.+
T Consensus 560 ~~v-~~iP~~~ 569 (589)
T 1ihu_A 560 SRV-ALVPVLA 569 (589)
T ss_dssp SSE-EEEECCS
T ss_pred CcE-EEccCCC
Confidence 644 7788654
No 37
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.71 E-value=4.1e-18 Score=186.85 Aligned_cols=164 Identities=20% Similarity=0.170 Sum_probs=105.4
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCC--
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF-- 257 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~-- 257 (532)
.|.|+|+||||||||+|+|||..||++|+||++||+|++ +++..+||.+..... ......+|+.......
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~-~~l~~~l~~~~~~~~-------~~v~~~~~l~~~~~d~~~ 80 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA-SNVGQVFSQTIGNTI-------QAIASVPGLSALEIDPQA 80 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT-CCHHHHTTSCCCSSC-------EECTTSTTEEEEECCHHH
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCC-cCHHHHhCCcccCCC-------ceeccchhhhhccCCHHH
Confidence 455788999999999999999999999999999999996 677777776532100 0000112232222100
Q ss_pred ----------------CCCc-----ccccCCch-----HHHHHHHHHH--hcccCCCCEEEEcCCCCCChhhhh------
Q 009574 258 ----------------SGQG-----RAIMRGPM-----VSGVINQLLT--TTEWGELDYLVIDMPPGTGDIQLT------ 303 (532)
Q Consensus 258 ----------------~~~~-----~~~~~~~~-----~~~~l~~ll~--~~~~~~yD~VIIDtpp~~~~~~~~------ 303 (532)
.... ...+.+.. ....+.++++ .+ +.+||||||||||......+.
T Consensus 81 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l-~~~yD~VIiDt~P~~~~lrll~lP~~~ 159 (589)
T 1ihu_A 81 AAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASL-LTRFDHIIFDTAPTGHTIRLLQLPGAW 159 (589)
T ss_dssp HHHHHHHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTH-HHHCSEEEESSCCCHHHHHHHHCGGGG
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhh-cccCCEEEECCCCchhHHHHHHhHHHH
Confidence 0000 00011110 1223455554 22 368999999999953211000
Q ss_pred -----------------------------h---hhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 304 -----------------------------L---CQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 304 -----------------------------~---~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
. ......+.+++|++|+..++.++.+.++.+++.++++.|+|+|++..
T Consensus 160 ~~~l~~~~~~~~~l~~~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~ 239 (589)
T 1ihu_A 160 SSFIDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLP 239 (589)
T ss_dssp TCCC------CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECC
T ss_pred HHHHHHhhccccccchhhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcC
Confidence 0 00011236999999999999999999999999999999999999865
Q ss_pred c
Q 009574 352 D 352 (532)
Q Consensus 352 ~ 352 (532)
.
T Consensus 240 ~ 240 (589)
T 1ihu_A 240 K 240 (589)
T ss_dssp G
T ss_pred c
Confidence 4
No 38
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=99.67 E-value=6.7e-18 Score=177.19 Aligned_cols=241 Identities=18% Similarity=0.210 Sum_probs=143.3
Q ss_pred cccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCeeeEEE
Q 009574 79 GTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNV 155 (532)
Q Consensus 79 ~~~~~~v~~~L~~V~DPel~~~I---v~lglv~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~v 155 (532)
..++++|.+.|+++..-.+..|| +...|+.+|+-...+..+. .-.+|.-.+...+.+.+.+.+.. ...
T Consensus 21 ~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~----~~~-- 91 (433)
T 2xxa_A 21 RLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVN---KSLTPGQEFVKIVRNELVAAMGE----ENQ-- 91 (433)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSSSCCC---SSSCTTTTTHHHHHHHHHHHHCS----SSC--
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccccc---ccCChHHHHHHHHHHHHHHHhcc----ccc--
Confidence 46788888999988888777666 5556666654322111110 11122333333333333333321 000
Q ss_pred EcccCCCcchhhccccccccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHC-CCcEEEEEcCCCCCCCCCCCCCcccccc
Q 009574 156 TMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRLLE 234 (532)
Q Consensus 156 ~l~~~p~~~~~~~~~~~~~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~-G~rVllID~D~~~~s~~~~lg~~~~~~~ 234 (532)
+. ....+.+++|+|+ ++||+||||++.+||.+|+++ |+||++||+|++++.....+.
T Consensus 92 -----~~---------~~~~~~~~vI~iv-G~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~------- 149 (433)
T 2xxa_A 92 -----TL---------NLAAQPPAVVLMA-GLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLE------- 149 (433)
T ss_dssp -----CC---------CCCSSSSEEEEEE-CSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHH-------
T ss_pred -----cc---------cccCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHH-------
Confidence 00 0012346799998 799999999999999999999 999999999999875322110
Q ss_pred cCCCCCceeecccCCcEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCCh--hhhh----hhhhc
Q 009574 235 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--IQLT----LCQVV 308 (532)
Q Consensus 235 ~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~--~~~~----~~~~~ 308 (532)
......|+++++.+... .....+.+.+..+.+..||||||||||..+. .... .....
T Consensus 150 --------~~~~~~~l~v~~~~~~~---------dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~ 212 (433)
T 2xxa_A 150 --------TLAEQVGVDFFPSDVGQ---------KPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASI 212 (433)
T ss_dssp --------HHHHHHTCEECCCCSSS---------CHHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHS
T ss_pred --------hhcccCCeeEEeCCCCC---------CHHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhh
Confidence 01223578888755421 1223345555554447899999999986542 1111 01133
Q ss_pred CCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcE
Q 009574 309 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL 378 (532)
Q Consensus 309 ~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l 378 (532)
..+.+++|+.+... .++...++.+.. ++++.|+|+|+++...+. +....+.+.++.|+.
T Consensus 213 ~p~~vllVvda~~g--~~~~~~~~~f~~-~l~i~gvVlnK~D~~~~~--------g~~l~i~~~~~~Pi~ 271 (433)
T 2xxa_A 213 NPVETLFVVDAMTG--QDAANTAKAFNE-ALPLTGVVLTKVDGDARG--------GAALSIRHITGKPIK 271 (433)
T ss_dssp CCSEEEEEEETTBC--TTHHHHHHHHHH-HSCCCCEEEECTTSSSCC--------THHHHHHHHHCCCEE
T ss_pred cCcceeEEeecchh--HHHHHHHHHHhc-cCCCeEEEEecCCCCccH--------HHHHHHHHHHCCCeE
Confidence 56788888776532 233344455543 466789999997654322 345577888887654
No 39
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=99.64 E-value=8e-16 Score=128.90 Aligned_cols=84 Identities=37% Similarity=0.620 Sum_probs=79.3
Q ss_pred cccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCeeeEEEEcc
Q 009574 79 GTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMS 158 (532)
Q Consensus 79 ~~~~~~v~~~L~~V~DPel~~~Iv~lglv~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~v~l~ 158 (532)
+.++++|+++|++|+|||++.|||++|+|++|+++++ ++|.|.|++|+|+||..+.+.++++++|.+++|+.+++|+++
T Consensus 5 m~~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~-~~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~v~V~l~ 83 (103)
T 1uwd_A 5 KVTKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQ-NNVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELT 83 (103)
T ss_dssp CCCHHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTT-CEEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred cchHHHHHHHHcCCCCCCCCcChhhcCCeeEEEEcCC-CEEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCcceEEEEEe
Confidence 3678999999999999999999999999999999864 799999999999999999999999999999999999999999
Q ss_pred cCCCc
Q 009574 159 AQPAR 163 (532)
Q Consensus 159 ~~p~~ 163 (532)
++|+.
T Consensus 84 ~~p~W 88 (103)
T 1uwd_A 84 FDPPW 88 (103)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 98874
No 40
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=99.63 E-value=2.6e-16 Score=132.80 Aligned_cols=84 Identities=27% Similarity=0.532 Sum_probs=79.6
Q ss_pred cccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHH-hcCCCeeeEEEEc
Q 009574 79 GTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVV-LAIPWVNKVNVTM 157 (532)
Q Consensus 79 ~~~~~~v~~~L~~V~DPel~~~Iv~lglv~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L-~~l~gv~~v~v~l 157 (532)
+.++++|+++|++|+|||++.|||++|+|++|.++++ ++|.|.|++|+|+||..+.|.++++++| .+++|+.+++|++
T Consensus 7 ~~~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~I~v~~~-~~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V~l 85 (108)
T 3lno_A 7 EAFENKLYANLEAVIDPELGVDIVNLGLVYDVTADEN-NNAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEVNV 85 (108)
T ss_dssp HHHHHHHHHHGGGCEETTTTEEHHHHTCEEEEEECTT-CCEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEEEE
T ss_pred hhhHHHHHHHHcCCCCCCCCCCHHHcCCceEEEECCC-CeEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 4578999999999999999999999999999999864 7899999999999999999999999999 9999999999999
Q ss_pred ccCCCc
Q 009574 158 SAQPAR 163 (532)
Q Consensus 158 ~~~p~~ 163 (532)
+|+|+.
T Consensus 86 ~~~p~W 91 (108)
T 3lno_A 86 VWNPPW 91 (108)
T ss_dssp CCSSCC
T ss_pred EecCCC
Confidence 999875
No 41
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=99.61 E-value=1.8e-15 Score=126.77 Aligned_cols=82 Identities=27% Similarity=0.564 Sum_probs=78.0
Q ss_pred ccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCeeeEEEEccc
Q 009574 80 TAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSA 159 (532)
Q Consensus 80 ~~~~~v~~~L~~V~DPel~~~Iv~lglv~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~v~l~~ 159 (532)
.++++|+++|++|+|||++.|||++|+|++|++++ ++|.|.|++|+|+||..+.+.++++++|.+++|+.+++|++++
T Consensus 6 ~~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~--~~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~V~V~l~~ 83 (103)
T 3cq1_A 6 PLEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEP--PRAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVTF 83 (103)
T ss_dssp HHHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEET--TEEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEECC
T ss_pred hHHHHHHHHHhCCCCCCCCcCchhcCceEEEEEEC--CEEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEec
Confidence 36789999999999999999999999999999987 6999999999999999999999999999999999999999999
Q ss_pred CCCc
Q 009574 160 QPAR 163 (532)
Q Consensus 160 ~p~~ 163 (532)
+|+.
T Consensus 84 ~p~W 87 (103)
T 3cq1_A 84 EPPW 87 (103)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8874
No 42
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=99.55 E-value=1.5e-14 Score=144.54 Aligned_cols=241 Identities=16% Similarity=0.192 Sum_probs=141.3
Q ss_pred ccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCeeeEEEE
Q 009574 80 TAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVT 156 (532)
Q Consensus 80 ~~~~~v~~~L~~V~DPel~~~I---v~lglv~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~v~ 156 (532)
.+++++.+.|+++.+-.+..|| +...++++++-...+.++ .+.-...+.+.+.+.+.+...-+-...
T Consensus 20 ~~~~~~~~~~~~~~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 89 (297)
T 1j8m_F 20 SYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKP-------PTYIERREWFIKIVYDELSNLFGGDKE--- 89 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCC-------CTTCCHHHHHHHHHHHHHHHHTTCSCC---
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccc-------cccCChHHHHHHHHHHHHHHHhccccc---
Confidence 4677777888887777666666 444555544321100111 011112234445555555433221110
Q ss_pred cccCCCcchhhccccccccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccC
Q 009574 157 MSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMN 236 (532)
Q Consensus 157 l~~~p~~~~~~~~~~~~~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~ 236 (532)
+. + .+...+++|+++ +++|+||||++.+||..++..|++|+++|+|++++.....+..
T Consensus 90 ----~~-------i--~~~~~~~vi~i~-G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~-------- 147 (297)
T 1j8m_F 90 ----PK-------V--IPDKIPYVIMLV-GVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQ-------- 147 (297)
T ss_dssp ----CC-------C--SCSSSSEEEEEE-CSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHH--------
T ss_pred ----cc-------c--ccCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHH--------
Confidence 00 0 011125788887 7999999999999999999999999999999998754321100
Q ss_pred CCCCceeecccCCcEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCC--hh-hhh-----hhhhc
Q 009574 237 PEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DI-QLT-----LCQVV 308 (532)
Q Consensus 237 ~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~--~~-~~~-----~~~~~ 308 (532)
.....|+++++.... ......+.+.++.+.+..||||||||||... .. .+. +....
T Consensus 148 -------~~~~~~v~v~~~~~~---------~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~ 211 (297)
T 1j8m_F 148 -------LGQQIGVPVYGEPGE---------KDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAI 211 (297)
T ss_dssp -------HHHHHTCCEECCTTC---------CCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHH
T ss_pred -------HhccCCeEEEecCCC---------CCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHh
Confidence 011236777774321 1223344555555545799999999999766 21 111 11244
Q ss_pred CCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEE
Q 009574 309 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 379 (532)
Q Consensus 309 ~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~ 379 (532)
.+|.+++|+.+.. . .+..+.++.+.. ..++.|+|+|+++...+. +....+...++.|+.+
T Consensus 212 ~~d~vllVvda~~-g-~~~~~~~~~~~~-~~~i~gvVlnk~D~~~~~--------g~~~~~~~~~~~pi~~ 271 (297)
T 1j8m_F 212 KPDEVTLVIDASI-G-QKAYDLASKFNQ-ASKIGTIIITKMDGTAKG--------GGALSAVAATGATIKF 271 (297)
T ss_dssp CCSEEEEEEEGGG-G-GGHHHHHHHHHH-TCTTEEEEEECGGGCTTH--------HHHHHHHHTTTCCEEE
T ss_pred cCCEEEEEeeCCc-h-HHHHHHHHHHHh-hCCCCEEEEeCCCCCcch--------HHHHHHHHHHCcCEEE
Confidence 6789999988753 2 333344455554 477799999997654321 2345677778877654
No 43
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.51 E-value=7e-14 Score=141.09 Aligned_cols=171 Identities=19% Similarity=0.215 Sum_probs=104.9
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 256 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 256 (532)
.+++|+|+|. +|+||||++.+||..++..|++|+++|+|++++.....+. .+.. .....++.++|.+
T Consensus 104 ~~~vI~ivG~-~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~---~~~~---------~~~~~~l~vip~~ 170 (320)
T 1zu4_A 104 RLNIFMLVGV-NGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLE---EWIK---------TRLNNKVDLVKAN 170 (320)
T ss_dssp SCEEEEEESS-TTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHH---HHHT---------TTSCTTEEEECCS
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHH---HHHh---------ccccCCceEEeCC
Confidence 3579999965 9999999999999999999999999999998753210000 0000 0014578888644
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhh------h------cCCCeEEEEeCCCcchH
Q 009574 257 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ------V------VPLTAAVIVTTPQKLAF 324 (532)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~------~------~~~d~viiV~~p~~~s~ 324 (532)
...... .....+.+.... ...||||||||||........+.. . ...|.+++|+.... ..
T Consensus 171 ~~~~~p-------~~~~~~~l~~~~-~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~-~~ 241 (320)
T 1zu4_A 171 KLNADP-------ASVVFDAIKKAK-EQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATT-GQ 241 (320)
T ss_dssp STTCCH-------HHHHHHHHHHHH-HTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGG-TH
T ss_pred CCCCCH-------HHHHHHHHHHHH-hcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC-cH
Confidence 321111 011222232222 379999999999976532111100 0 12578888887663 34
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEE
Q 009574 325 IDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 379 (532)
Q Consensus 325 ~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~ 379 (532)
..+.++ +.+.. ..++.|+|+|+++....+ +....+...+|.|+.+
T Consensus 242 ~~l~~~-~~~~~-~~~i~GvVltk~d~~~~~--------g~~~~~~~~~~~Pi~~ 286 (320)
T 1zu4_A 242 NGVIQA-EEFSK-VADVSGIILTKMDSTSKG--------GIGLAIKELLNIPIKM 286 (320)
T ss_dssp HHHHHH-HHHTT-TSCCCEEEEECGGGCSCT--------THHHHHHHHHCCCEEE
T ss_pred HHHHHH-HHHhh-cCCCcEEEEeCCCCCCch--------hHHHHHHHHHCcCEEE
Confidence 444443 33433 366789999997654322 3566777888887644
No 44
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.48 E-value=1e-13 Score=138.50 Aligned_cols=167 Identities=20% Similarity=0.201 Sum_probs=106.7
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 256 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 256 (532)
.+++|+++ +++|+||||++.+||..++..|.+|+++|+|++++...+.++ . .....|+++++.+
T Consensus 97 ~~~~i~i~-g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~-------------~--~~~~~~l~~~~~~ 160 (295)
T 1ls1_A 97 DRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLR-------------L--LGEKVGVPVLEVM 160 (295)
T ss_dssp SSEEEEEE-CCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHH-------------H--HHHHHTCCEEECC
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHH-------------H--hcccCCeEEEEcC
Confidence 46799999 899999999999999999999999999999998864322111 0 0122467788754
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhh------hhcCCCeEEEEeCCCcchHHHHHHH
Q 009574 257 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLC------QVVPLTAAVIVTTPQKLAFIDVAKG 330 (532)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~------~~~~~d~viiV~~p~~~s~~~~~~~ 330 (532)
.... ...+++..++.+...+||+|||||||..+.....+. .....+.+++|+.+.. . .++.+.
T Consensus 161 ~~~~---------p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~-~-~~~~~~ 229 (295)
T 1ls1_A 161 DGES---------PESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT-G-QEALSV 229 (295)
T ss_dssp TTCC---------HHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG-T-HHHHHH
T ss_pred CCCC---------HHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCC-c-HHHHHH
Confidence 3211 112233444443226899999999996653111111 1224678888877653 2 333333
Q ss_pred HHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEE
Q 009574 331 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 379 (532)
Q Consensus 331 i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~ 379 (532)
++.+.. ..++.|+|+|+++...+. +....+.+.+|.|+.+
T Consensus 230 ~~~~~~-~~~i~givlnk~d~~~~~--------g~~~~~~~~~~~pi~~ 269 (295)
T 1ls1_A 230 ARAFDE-KVGVTGLVLTKLDGDARG--------GAALSARHVTGKPIYF 269 (295)
T ss_dssp HHHHHH-HTCCCEEEEECGGGCSSC--------HHHHHHHHHHCCCEEE
T ss_pred HHHHhh-cCCCCEEEEECCCCCccH--------HHHHHHHHHHCcCEEE
Confidence 444443 356789999997654322 3456677788887664
No 45
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=99.46 E-value=2.4e-13 Score=141.66 Aligned_cols=240 Identities=19% Similarity=0.173 Sum_probs=144.1
Q ss_pred cccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCeeeEEE
Q 009574 79 GTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNV 155 (532)
Q Consensus 79 ~~~~~~v~~~L~~V~DPel~~~I---v~lglv~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~v 155 (532)
..++++|.+.|++++.-.+..|| +...|+++|+-...+..+ .. +....+.+.+.+.+.|...-+-....+
T Consensus 21 ~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~------~~-~~~~~~~~~~~v~~~L~~~~~~~~~~i 93 (425)
T 2ffh_A 21 RITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQV------LE-SLTPAEVILATVYEALKEALGGEARLP 93 (425)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTG------GG-CSCHHHHHHHHHHHHHHHHTTSSCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccc------cc-cCCcHHHHHHHHHHHHHHHhCCCcccc
Confidence 45788888999988888777766 555666655432110111 00 111234555566665554322111001
Q ss_pred EcccCCCcchhhccccccccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccccccc
Q 009574 156 TMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEM 235 (532)
Q Consensus 156 ~l~~~p~~~~~~~~~~~~~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~ 235 (532)
.+. .+++|+++ +++|+||||++.+||..++..|++|+++|+|++++.....+..
T Consensus 94 -----------------~l~-~~~vi~i~-G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~------- 147 (425)
T 2ffh_A 94 -----------------VLK-DRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRL------- 147 (425)
T ss_dssp -----------------CCC-SSEEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHH-------
T ss_pred -----------------cCC-CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHH-------
Confidence 111 35689988 7899999999999999999999999999999998654321110
Q ss_pred CCCCCceeecccCCcEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh--hh----hhhhcC
Q 009574 236 NPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--LT----LCQVVP 309 (532)
Q Consensus 236 ~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~--~~----~~~~~~ 309 (532)
.....|+++++.+... .....+.+.++.+....||||||||||...... .. ......
T Consensus 148 --------~~~~~gv~v~~~~~~~---------~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~ 210 (425)
T 2ffh_A 148 --------LGEKVGVPVLEVMDGE---------SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG 210 (425)
T ss_dssp --------HHHHHTCCEEECCTTC---------CHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred --------hcccCCccEEecCCCC---------CHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccC
Confidence 0122477888755321 112233445554433799999999999764211 11 111234
Q ss_pred CCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEE
Q 009574 310 LTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 379 (532)
Q Consensus 310 ~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~ 379 (532)
.+.+++|+.+.. . .++...++.+.. .+++.|+|+|+++...+. +....+.+.+|.|+.+
T Consensus 211 pd~vlLVvDa~t-g-q~av~~a~~f~~-~l~i~GVIlTKlD~~~~~--------g~alsi~~~~g~PI~f 269 (425)
T 2ffh_A 211 PDEVLLVLDAMT-G-QEALSVARAFDE-KVGVTGLVLTKLDGDARG--------GAALSARHVTGKPIYF 269 (425)
T ss_dssp CSEEEEEEEGGG-T-THHHHHHHHHHH-HTCCCEEEEESGGGCSSC--------HHHHHHHHHHCCCEEE
T ss_pred CceEEEEEeccc-h-HHHHHHHHHHHh-cCCceEEEEeCcCCcccH--------HHHHHHHHHHCCCEEE
Confidence 688888887653 2 333344445543 356789999997654322 3455677788888544
No 46
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=99.44 E-value=2.7e-13 Score=130.22 Aligned_cols=194 Identities=10% Similarity=0.040 Sum_probs=117.4
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCC--cccccccCCCCCceeecccCCcEEEe
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSP--ENRLLEMNPEKRTIIPTEYLGVKLVS 254 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~--~~~~~~~~~~~~~i~~~~~~~l~vl~ 254 (532)
.|+.|.|++...|+||||++++|+.+|+++|+||..+--=..++... --+. .+......... .+....+...+.
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KPv~~g~~~~-~~~~~~~D~~~~~~~~~---~~~~~~~~~~~~ 78 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKPVASGQSQF-SELCEDVESILNAYKHK---FTAAEINLISFN 78 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECSEEESBCSS-SSSBHHHHHHHHHTTTS---SCHHHHCSEEES
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecceeecCccC-CCCCChHHHHHHhcCCC---CChhhEEEEEEC
Confidence 47899999999999999999999999999999999964100110000 0000 00000000000 000111223333
Q ss_pred cCCCCCcccccCC-chHHHHHHHHHHh-cccCCCCEEEEcCCCCCChhh------hhhhhhcCCCeEEEEeCCCcchHHH
Q 009574 255 FGFSGQGRAIMRG-PMVSGVINQLLTT-TEWGELDYLVIDMPPGTGDIQ------LTLCQVVPLTAAVIVTTPQKLAFID 326 (532)
Q Consensus 255 ~~~~~~~~~~~~~-~~~~~~l~~ll~~-~~~~~yD~VIIDtpp~~~~~~------~~~~~~~~~d~viiV~~p~~~s~~~ 326 (532)
............+ ......+.+.++. +. .+||+||||+++|+.... ..++.. ....+++|+.+...++..
T Consensus 79 ~p~sp~~aa~~~~~~i~~~~i~~~~~~~l~-~~~D~vlIEgaggl~~p~~~~~~~adla~~-l~~pviLV~~~~~~~i~~ 156 (228)
T 3of5_A 79 QAVAPHIIAAKTKVDISIENLKQFIEDKYN-QDLDILFIEGAGGLLTPYSDHTTQLDLIKA-LQIPVLLVSAIKVGCINH 156 (228)
T ss_dssp SSSCHHHHHHHTTCCCCHHHHHHHHHGGGG-SSCSEEEEEEEEETTCBSSSSCBHHHHHHH-HTCCEEEEEECSTTHHHH
T ss_pred CCCCHHHHHHHcCCCCCHHHHHHHHHHHHH-ccCCEEEEECCCccccccccchhHHHHHHH-cCCCEEEEEcCCcchHHH
Confidence 2211100000111 1112345555555 44 799999999998764211 111111 124589999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEecc
Q 009574 327 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLP 382 (532)
Q Consensus 327 ~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP 382 (532)
+...++.+...+.++.|+|+|++..+.. ...+..+.+++.+|.++++.||
T Consensus 157 ~~~~~~~l~~~~~~i~GvIlN~~~~~~~------~~~~~~~~l~~~~g~pvLG~iP 206 (228)
T 3of5_A 157 TLLTINELNRHNIKLAGWIANCNDSNIK------YIDEQINTIEELSGYKCSAKIS 206 (228)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECCTTCS------CHHHHHHHHHHHHSCCCSEEEE
T ss_pred HHHHHHHHHhCCCcEEEEEEECcCCcch------hhHHHHHHHHHhhCCCEEEECC
Confidence 9999999999999999999999654321 1124577888889999999999
No 47
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.40 E-value=7.5e-14 Score=148.53 Aligned_cols=241 Identities=12% Similarity=0.094 Sum_probs=136.2
Q ss_pred cccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCeeeEEE
Q 009574 79 GTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNV 155 (532)
Q Consensus 79 ~~~~~~v~~~L~~V~DPel~~~I---v~lglv~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~v 155 (532)
..++++|.++|+++..-.+..|| +...|+..|+-...+..+ .. +....+.+.+.+.+.|..+-+....
T Consensus 22 ~~~e~~~~~~l~el~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~------~~-~~~~~~~~~~~v~~eL~~ll~~~~~-- 92 (504)
T 2j37_W 22 IINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEM------AS-GLNKRKMIQHAVFKELVKLVDPGVK-- 92 (504)
T ss_dssp SCCHHHHHHHHHHHHHHHCCTTTSSSTTHHHHHHHHHHHTTCCC------CS-SSCHHHHHHHHHHHHHHHHHCCCCC--
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCcc------cc-cCChHHHHHHHHHHHHHHHhccccc--
Confidence 35677777778877777666665 445555554321110111 00 1112345666677766654321110
Q ss_pred EcccCCCcchhhccccccccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccccccc
Q 009574 156 TMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEM 235 (532)
Q Consensus 156 ~l~~~p~~~~~~~~~~~~~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~ 235 (532)
+. ....+..++|+|+ +.+||||||++.+||.+|++.|+||++||+|++++.....+..
T Consensus 93 -----~~---------~~~~~~~~vI~iv-G~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~------- 150 (504)
T 2j37_W 93 -----AW---------TPTKGKQNVIMFV-GLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQ------- 150 (504)
T ss_dssp -----CC---------CCCSS--EEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHH-------
T ss_pred -----hh---------ccccCCCeEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHH-------
Confidence 00 0011335689998 6699999999999999999999999999999988653211110
Q ss_pred CCCCCceeecccCCcEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChh--hh-h---hhhhcC
Q 009574 236 NPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--QL-T---LCQVVP 309 (532)
Q Consensus 236 ~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~--~~-~---~~~~~~ 309 (532)
.....++.+++..... .....+.+.++.+.+..||+||||||+..... .. . ......
T Consensus 151 --------~~~~~~i~v~~~~~~~---------dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~ 213 (504)
T 2j37_W 151 --------NATKARIPFYGSYTEM---------DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQ 213 (504)
T ss_dssp --------HHHHHTCCEEECCCCS---------CHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHC
T ss_pred --------HhhccCceEEccCCCC---------CHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhc
Confidence 0011245555532211 11223344444444589999999999976421 11 0 111225
Q ss_pred CCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcE
Q 009574 310 LTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL 378 (532)
Q Consensus 310 ~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l 378 (532)
.|.+++|+.+.... . .....+.+.+. .++.++|+|+++...+. +....+.+.+|.|+.
T Consensus 214 pd~vllVvDa~~g~-~-~~~~a~~~~~~-~~i~gvVlNK~D~~~~~--------g~~l~~~~~~g~PI~ 271 (504)
T 2j37_W 214 PDNIVYVMDASIGQ-A-CEAQAKAFKDK-VDVASVIVTKLDGHAKG--------GGALSAVAATKSPII 271 (504)
T ss_dssp CSEEEEEEETTCCT-T-HHHHHHHHHHH-HCCCCEEEECTTSCCCC--------THHHHHHHHHCCCEE
T ss_pred CceEEEEEeccccc-c-HHHHHHHHHhh-cCceEEEEeCCccccch--------HHHHHHHHHhCCCeE
Confidence 68888888775431 1 22333444442 56669999997654322 234456778888764
No 48
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.37 E-value=2.9e-12 Score=133.67 Aligned_cols=241 Identities=13% Similarity=0.142 Sum_probs=140.0
Q ss_pred cccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCeeeEEE
Q 009574 79 GTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNV 155 (532)
Q Consensus 79 ~~~~~~v~~~L~~V~DPel~~~I---v~lglv~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~v 155 (532)
..+++++.+.|+++.+..+..|| +...|+.+++-......+ . ..-...+.+.+.+.+.|..+-+....
T Consensus 22 ~l~e~~~~~~l~ei~~~Ll~adv~~~~~~~~~~~v~~~~~~~~v------~-~~~~~~~~v~~~l~~eL~~~L~~~~~-- 92 (443)
T 3dm5_A 22 SVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKP------P-AGISKKEHIIKIVYEELTKFLGTEAK-- 92 (443)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCC------C-TTCCHHHHHHHHHHHHHHHHTTSSCC--
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhccc------c-ccCCcHHHHHHHHHHHHHHHhcCccc--
Confidence 35788888899999888777666 444555554322110111 0 11112445666667666654221100
Q ss_pred EcccCCCcchhhccccccccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccccccc
Q 009574 156 TMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEM 235 (532)
Q Consensus 156 ~l~~~p~~~~~~~~~~~~~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~ 235 (532)
. ....+.+++|+++ |.+|+||||++.+||.+|+++|+||+++|+|++.+.....+.
T Consensus 93 ------~---------~~~~~~p~vIliv-G~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~-------- 148 (443)
T 3dm5_A 93 ------P---------IEIKEKPTILLMV-GIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLR-------- 148 (443)
T ss_dssp ------C---------CCCCSSSEEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHH--------
T ss_pred ------c---------cccCCCCeEEEEE-CcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHH--------
Confidence 0 0111235788888 559999999999999999999999999999998864211000
Q ss_pred CCCCCceeecccCCcEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh-h-----hhhhhcC
Q 009574 236 NPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-L-----TLCQVVP 309 (532)
Q Consensus 236 ~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~-~-----~~~~~~~ 309 (532)
......++.+...... ......+.+.++.+....||+|||||++...... + .......
T Consensus 149 -------~~~~~~gvpv~~~~~~---------~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~ 212 (443)
T 3dm5_A 149 -------QLLDRYHIEVFGNPQE---------KDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIH 212 (443)
T ss_dssp -------HHHGGGTCEEECCTTC---------CCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred -------HHHHhcCCcEEecCCC---------CCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhc
Confidence 0111224555543221 1223344455555444679999999998543111 1 1112334
Q ss_pred CCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEE
Q 009574 310 LTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 379 (532)
Q Consensus 310 ~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~ 379 (532)
.|.+++|+.+... .++....+.|.+ ..++.|+|+|+++...++ +....+...++.|+.+
T Consensus 213 pd~vlLVvDA~~g--q~a~~~a~~f~~-~~~i~gVIlTKlD~~~~g--------G~~ls~~~~~g~PI~f 271 (443)
T 3dm5_A 213 PHEVILVIDGTIG--QQAYNQALAFKE-ATPIGSIIVTKLDGSAKG--------GGALSAVAATGAPIKF 271 (443)
T ss_dssp CSEEEEEEEGGGG--GGHHHHHHHHHH-SCTTEEEEEECCSSCSSH--------HHHHHHHHTTCCCEEE
T ss_pred CceEEEEEeCCCc--hhHHHHHHHHHh-hCCCeEEEEECCCCcccc--------cHHHHHHHHHCCCEEE
Confidence 6888888876542 223334455654 346789999997654322 3455666778887653
No 49
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.36 E-value=7.6e-12 Score=131.11 Aligned_cols=164 Identities=18% Similarity=0.230 Sum_probs=103.1
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecC-
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG- 256 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~- 256 (532)
+++|+|++ .+|+||||++.+||..++++|+||+++|+|++++.....+.. .....|+.+++.+
T Consensus 99 ~~vI~ivG-~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~---------------~~~~~gv~v~~~~~ 162 (432)
T 2v3c_C 99 QNVILLVG-IQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQ---------------LAEKIHVPIYGDET 162 (432)
T ss_dssp CCCEEEEC-CSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHH---------------HHHHSSCCEECCSS
T ss_pred CeEEEEEC-CCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHH---------------hhhccCcceEecCC
Confidence 46888885 699999999999999999999999999999998764322110 0123467777754
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh-h-h----hhhhcCCCeEEEEeCCCcchHHHHHHH
Q 009574 257 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-L-T----LCQVVPLTAAVIVTTPQKLAFIDVAKG 330 (532)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~-~-~----~~~~~~~d~viiV~~p~~~s~~~~~~~ 330 (532)
...+.. ..+.+.+..+ ..||+||||||+...... + . .......|.+++|+.+.... ++...
T Consensus 163 ~~~dp~---------~i~~~~l~~~--~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~ 229 (432)
T 2v3c_C 163 RTKSPV---------DIVKEGMEKF--KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQ 229 (432)
T ss_dssp SCCSSS---------TTHHHHHHTT--SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHH
T ss_pred CCCCHH---------HHHHHHHHHh--hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHH
Confidence 111110 1123344443 789999999999764211 1 1 11122468888887654321 23334
Q ss_pred HHHHHcCCC-CEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEE
Q 009574 331 VRMFSKLKV-PCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 379 (532)
Q Consensus 331 i~~l~~~~~-~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~ 379 (532)
.+.++. +. ++.++|+|+++...+. +....+.+.++.|+.+
T Consensus 230 ~~~~~~-~~~~i~gvVlnK~D~~~~~--------g~~l~~~~~~~~pi~~ 270 (432)
T 2v3c_C 230 AKAFKE-AVGEIGSIIVTKLDGSAKG--------GGALSAVAETKAPIKF 270 (432)
T ss_dssp HHHHHT-TSCSCEEEEEECSSSCSTT--------HHHHHHHHHSSCCEEE
T ss_pred HHHHhh-cccCCeEEEEeCCCCccch--------HHHHHHHHHHCCCEEE
Confidence 455554 35 7799999997654321 2344577888887654
No 50
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.36 E-value=5.4e-13 Score=130.51 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=42.7
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCC
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP 223 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~ 223 (532)
++..++++.++||||||||++.|||..|+ .|+||++||+|+|.+.+.
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~ 57 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELP 57 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCS
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccC
Confidence 45568889999999999999999999999 999999999999987653
No 51
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=99.31 E-value=8.6e-12 Score=121.20 Aligned_cols=194 Identities=15% Similarity=0.093 Sum_probs=115.3
Q ss_pred cCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEe
Q 009574 175 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVS 254 (532)
Q Consensus 175 ~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~ 254 (532)
.+.|+.|.|++...|+|||++++.|+.+|+++|+||..+--=..+.. .. +.+........ . +... .+...+.
T Consensus 23 ~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~-~~--~~D~~~~~~~~--g-~~~~--~~~~~~~ 94 (251)
T 3fgn_A 23 QSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTA-RG--DDDLAEVGRLA--G-VTQL--AGLARYP 94 (251)
T ss_dssp CSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGG-GT--CCHHHHHHHHH--C-CCEE--EEEEECS
T ss_pred ccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCC-CC--CHHHHHHHHHc--C-CCCC--CCCeeEC
Confidence 35679999999999999999999999999999999999752111100 00 00000000000 0 0000 0111111
Q ss_pred cCCCCCcccccCC--chHHHHHHHHHHhcccCCCCEEEEcCCCCCChh-------hhhhhhhcCCCeEEEEeCCCcchHH
Q 009574 255 FGFSGQGRAIMRG--PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-------QLTLCQVVPLTAAVIVTTPQKLAFI 325 (532)
Q Consensus 255 ~~~~~~~~~~~~~--~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~-------~~~~~~~~~~d~viiV~~p~~~s~~ 325 (532)
............+ ......+.+.++.+. .+||+||||+++|+... ...++. ....-+++|+.+...++.
T Consensus 95 ~p~sP~~aa~~~~~~~~~~~~i~~~~~~l~-~~~D~vlIEGagGl~~pl~~~~~~~adla~-~l~~pVILV~~~~~g~i~ 172 (251)
T 3fgn_A 95 QPMAPAAAAEHAGMALPARDQIVRLIADLD-RPGRLTLVEGAGGLLVELAEPGVTLRDVAV-DVAAAALVVVTADLGTLN 172 (251)
T ss_dssp SSSCHHHHHHHTTCCCCCHHHHHHHHHTTC-CTTCEEEEECSSSTTCEEETTTEEHHHHHH-HTTCEEEEEECSSTTHHH
T ss_pred CCCChHHHHHHcCCCCCCHHHHHHHHHHHH-hcCCEEEEECCCCCcCCcCcccchHHHHHH-HcCCCEEEEEcCCCccHH
Confidence 1111000000111 112234556665554 79999999999987421 111111 123668999999999999
Q ss_pred HHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccCch
Q 009574 326 DVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 385 (532)
Q Consensus 326 ~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~~~ 385 (532)
.+...++.+...+.++.|+|+|++..+... ......+.+++. +|+++.||++.
T Consensus 173 ~~~lt~~~l~~~g~~i~GvIlN~v~~~~~~-----~~~~~~~~le~~--vpvLG~iP~~~ 225 (251)
T 3fgn_A 173 HTKLTLEALAAQQVSCAGLVIGSWPDPPGL-----VAASNRSALARI--AMVRAALPAGA 225 (251)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEECSSCCH-----HHHHHHHHHHHH--SCEEEEEETTG
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCCCchhh-----hhhhHHHHHHHh--CCEEEEeeCCC
Confidence 999999999888999999999996432210 011234445444 89999999875
No 52
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=99.27 E-value=1.8e-11 Score=127.68 Aligned_cols=242 Identities=17% Similarity=0.183 Sum_probs=141.1
Q ss_pred cccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCeeeEEE
Q 009574 79 GTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNV 155 (532)
Q Consensus 79 ~~~~~~v~~~L~~V~DPel~~~I---v~lglv~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~v 155 (532)
..+++++.++|+++.+..+..|| +...|+.+|+-......+ ...-...+.+.+.+.+.|..+-+...
T Consensus 18 ~l~e~~~~~~l~el~~~Ll~aDv~~~~~~~~~~~v~~~~~~~~~-------~~~~~~~~~v~~~v~~eL~~~L~~~~--- 87 (433)
T 3kl4_A 18 TPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKP-------PSVLERKEWFISIVYDELSKLFGGDK--- 87 (433)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCC-------CTTCCHHHHHHHHHHHHHHHHHCSSS---
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhcccc-------cccCChHHHHHHHHHHHHHHhcCccc---
Confidence 46788999999999998887777 556666665432110111 11122345666677777665322110
Q ss_pred EcccCCCcchhhccccccccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccccccc
Q 009574 156 TMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEM 235 (532)
Q Consensus 156 ~l~~~p~~~~~~~~~~~~~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~ 235 (532)
+.. ......+++|+++ |.+|+||||++.+||..|++.|++|+++|+|.+++.....
T Consensus 88 -----~~~--------~~~~~~~~vI~lv-G~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eq---------- 143 (433)
T 3kl4_A 88 -----EPN--------VNPTKLPFIIMLV-GVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQ---------- 143 (433)
T ss_dssp -----CCC--------CSCCSSSEEEEEC-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHH----------
T ss_pred -----ccc--------ccccCCCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHH----------
Confidence 000 0112235688887 8899999999999999999999999999999876531100
Q ss_pred CCCCCceeecccCCcEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCC---hhhh-----hhhhh
Q 009574 236 NPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG---DIQL-----TLCQV 307 (532)
Q Consensus 236 ~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~---~~~~-----~~~~~ 307 (532)
........++.+...... ..........+..+.+..||+||||||+... +..+ .....
T Consensus 144 -----L~~~~~~~gv~~~~~~~~---------~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~ 209 (433)
T 3kl4_A 144 -----LLQLGNQIGVQVYGEPNN---------QNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDV 209 (433)
T ss_dssp -----HHHHHHTTTCCEECCTTC---------SCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHH
T ss_pred -----HHHHHHhcCCceeecccc---------CCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHh
Confidence 000011123434332211 1223344555666555799999999998543 1110 11112
Q ss_pred cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEE
Q 009574 308 VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 379 (532)
Q Consensus 308 ~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~ 379 (532)
...+.+++|+..... .++....+.|.+ ..++.|+|+|+++...+. +..-.+....|.|+.+
T Consensus 210 ~~pd~vlLVlDa~~g--q~a~~~a~~f~~-~~~~~gVIlTKlD~~a~~--------G~als~~~~~g~Pi~f 270 (433)
T 3kl4_A 210 LKPDDVILVIDASIG--QKAYDLASRFHQ-ASPIGSVIITKMDGTAKG--------GGALSAVVATGATIKF 270 (433)
T ss_dssp HCCSEEEEEEEGGGG--GGGHHHHHHHHH-HCSSEEEEEECGGGCSCH--------HHHHHHHHHHTCEEEE
T ss_pred hCCcceEEEEeCccc--hHHHHHHHHHhc-ccCCcEEEEecccccccc--------hHHHHHHHHHCCCEEE
Confidence 244778888776532 233344455553 245689999997755432 3455666677877543
No 53
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.24 E-value=7.9e-11 Score=117.84 Aligned_cols=168 Identities=18% Similarity=0.214 Sum_probs=101.3
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 256 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 256 (532)
.+++|++++. +|+||||++.+||..++..|++|+++|+|.+++.... .+. ......|+.+++..
T Consensus 103 ~~~vi~ivG~-~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~e------qL~---------~~~~~~gl~~~~~~ 166 (306)
T 1vma_A 103 PPFVIMVVGV-NGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIE------QLK---------IWGERVGATVISHS 166 (306)
T ss_dssp SCEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHH------HHH---------HHHHHHTCEEECCS
T ss_pred CCeEEEEEcC-CCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHH------HHH---------HHHHHcCCcEEecC
Confidence 4579999965 9999999999999999999999999999997643110 000 00011255666533
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhh------hhhh------cCCCeEEEEeCCCcchH
Q 009574 257 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT------LCQV------VPLTAAVIVTTPQKLAF 324 (532)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~------~~~~------~~~d~viiV~~p~~~s~ 324 (532)
... .....+...+......+||+||||||+........ .... ...+.+++|+... ...
T Consensus 167 s~~---------~~~~v~~~al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~-t~~ 236 (306)
T 1vma_A 167 EGA---------DPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT-TGQ 236 (306)
T ss_dssp TTC---------CHHHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG-GHH
T ss_pred Ccc---------CHHHHHHHHHHHHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECC-CCH
Confidence 211 11222122222212379999999999854321100 0001 1257778887665 333
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEe
Q 009574 325 IDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 380 (532)
Q Consensus 325 ~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~ 380 (532)
..+..+ +.+.+ ..++.|+|+|+++...++ +....+...++.|+.+.
T Consensus 237 ~~l~~a-~~~~~-~~~i~gvVlTk~D~~~~g--------G~~l~~~~~~~~Pi~~i 282 (306)
T 1vma_A 237 NGLVQA-KIFKE-AVNVTGIILTKLDGTAKG--------GITLAIARELGIPIKFI 282 (306)
T ss_dssp HHHHHH-HHHHH-HSCCCEEEEECGGGCSCT--------THHHHHHHHHCCCEEEE
T ss_pred HHHHHH-HHHHh-cCCCCEEEEeCCCCccch--------HHHHHHHHHHCCCEEEE
Confidence 334433 34433 256789999997754432 45778888899877654
No 54
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=99.24 E-value=7e-11 Score=114.09 Aligned_cols=176 Identities=11% Similarity=0.057 Sum_probs=100.6
Q ss_pred cccccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCccccccc----CCCCCceeecc
Q 009574 171 PEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEM----NPEKRTIIPTE 246 (532)
Q Consensus 171 ~~~~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~----~~~~~~i~~~~ 246 (532)
...+..|++.|.|++...|+|||++++.|+.+|+++|+||..+--=..+.. ..-+...+.... ......+....
T Consensus 14 ~~~~~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKPv~~g~~--~~~~~~~D~~~~~~~~~~~~~g~~~~~ 91 (242)
T 3qxc_A 14 RENLYFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVN--DAINHSSDAHLFLQDNRLLDRSLTLKD 91 (242)
T ss_dssp -----CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECCEECSCC--TTTCCCSHHHHHHHHHHTTCTTCCHHH
T ss_pred hhHHhhcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEeeeecCCc--ccCCCCchHHHHHHHHHHHhCCCChHH
Confidence 356788999999999999999999999999999999999999852111110 000000000000 00000000000
Q ss_pred cCCcEEEecCCCCCcccccCC---chHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh------hhhhhhcCCCeEEEEe
Q 009574 247 YLGVKLVSFGFSGQGRAIMRG---PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ------LTLCQVVPLTAAVIVT 317 (532)
Q Consensus 247 ~~~l~vl~~~~~~~~~~~~~~---~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~------~~~~~~~~~d~viiV~ 317 (532)
-+...+.............+ ......+.+.++.+. ..||+||||+++|+.... ..++.. ...-+++|+
T Consensus 92 -~~p~~~~~p~sp~~aa~~~g~~~~i~~~~I~~~~~~l~-~~~D~vlIEGagGl~~pl~~~~~~adlA~~-l~~pVILV~ 168 (242)
T 3qxc_A 92 -ISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFT-KTYDLVIVEGAGGLCVPITLEENMLDFALK-LKAKMLLIS 168 (242)
T ss_dssp -HCCEECSSSSCHHHHHHHHCTTCCCCHHHHHHHHHHGG-GTCSEEEEECCSCTTCBSSSSCBHHHHHHH-HTCEEEEEE
T ss_pred -eeeEEECCCCChHHHHHHcCCCCcCCHHHHHHHHHHHH-hcCCEEEEECCCCccccccccchHHHHHHH-cCCCEEEEE
Confidence 01112211110000000000 111234555555554 799999999998875321 111111 124589999
Q ss_pred CCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 318 TPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 318 ~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
.+...++..+...++.++..+++ .|+|+|++..+
T Consensus 169 ~~~lg~i~~~~lt~~~l~~~g~~-~GvIlN~v~~~ 202 (242)
T 3qxc_A 169 HDNLGLINDCLLNDFLLKSHQLD-YKIAINLKGNN 202 (242)
T ss_dssp CCSTTHHHHHHHHHHHHHTSSSC-EEEEECCCTTC
T ss_pred cCCCcHHHHHHHHHHHHHhCCCC-EEEEEeCCCCc
Confidence 99999999999999999999999 99999997543
No 55
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A
Probab=99.17 E-value=8.2e-12 Score=106.55 Aligned_cols=77 Identities=17% Similarity=0.279 Sum_probs=65.4
Q ss_pred cHHHHHHHhccCCCCCCCCCccccCCeeEEEEe-----cCCCeEEEEEEeCCCCCCchHHHHHHHHHHHhc-CCCeeeEE
Q 009574 81 AENDVLKALSQIIDPDFGTDIVSCGFVKDMQIN-----EALGEVSFRLELTTPACPIKDMFEQRANEVVLA-IPWVNKVN 154 (532)
Q Consensus 81 ~~~~v~~~L~~V~DPel~~~Iv~lglv~~v~i~-----~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~-l~gv~~v~ 154 (532)
.+++|+++|++|+|||+|.+|++||+|+++.+. ++.+.|.|.|++|.|+||++..|..+++.+|.. +|+.-+++
T Consensus 9 ~~~eI~d~L~~I~DPEiPvtl~dLGvV~~v~I~v~~~~~~~~~V~V~~TPT~p~Cp~a~~I~l~Ir~kL~~~lp~~~kV~ 88 (130)
T 3ux2_A 9 KALEVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGLCLRVKLQRCLPFKHKLE 88 (130)
T ss_dssp HHHHHHHHHTTCBCSSSSSBTTTTTSCCGGGEEEEEEETTEEEEEECCCCCCCSSCHHHHHHHHHHHHHHHHCSSCCCCC
T ss_pred cHHHHHHHHhcCCCCCCCCCHHHCCeeeecceEeecccCCCCeEEEEEEeCCCCCCchHHHHHHHHHHHHHhCCCceEEE
Confidence 478899999999999999999999999997663 333679999999999999999999999999965 77755554
Q ss_pred EEc
Q 009574 155 VTM 157 (532)
Q Consensus 155 v~l 157 (532)
+.+
T Consensus 89 v~I 91 (130)
T 3ux2_A 89 IYI 91 (130)
T ss_dssp CCC
T ss_pred EEE
Confidence 443
No 56
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.04 E-value=3.9e-10 Score=112.42 Aligned_cols=160 Identities=18% Similarity=0.147 Sum_probs=93.3
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHH-CCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 256 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~-~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 256 (532)
+++|+|++ .+|+||||++.+||..++. .|++|+++|+|++++.....+. .. ....|+.+...
T Consensus 105 g~vi~lvG-~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~------~~---------~~~~gl~~~~~- 167 (296)
T 2px0_A 105 SKYIVLFG-STGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLK------TY---------AELLQAPLEVC- 167 (296)
T ss_dssp SSEEEEEE-STTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHH------HH---------HTTTTCCCCBC-
T ss_pred CcEEEEEC-CCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHH------HH---------HHhcCCCeEec-
Confidence 46899985 5999999999999999995 8999999999998644211000 00 00012211110
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhh---hhhhhc---CCCeEEEEeCCCcchHHHHHHH
Q 009574 257 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL---TLCQVV---PLTAAVIVTTPQKLAFIDVAKG 330 (532)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~---~~~~~~---~~d~viiV~~p~~~s~~~~~~~ 330 (532)
..+ ..+...+..+ .+||+|||||++....... .+..+. ..+.+++|+... ....++.+.
T Consensus 168 ---------~~~---~~l~~al~~~--~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at-~~~~~~~~~ 232 (296)
T 2px0_A 168 ---------YTK---EEFQQAKELF--SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSAT-AKYEDMKHI 232 (296)
T ss_dssp ---------SSH---HHHHHHHHHG--GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETT-BCHHHHHHH
T ss_pred ---------CCH---HHHHHHHHHh--cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECC-CCHHHHHHH
Confidence 000 1133344333 6899999999885532211 111122 245566666333 234455555
Q ss_pred HHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEE
Q 009574 331 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 379 (532)
Q Consensus 331 i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~ 379 (532)
.+.+.. +++.|+|+|+++...+. +....+...+|.|+.+
T Consensus 233 ~~~~~~--l~~~giVltk~D~~~~~--------g~~~~~~~~~~~pi~~ 271 (296)
T 2px0_A 233 VKRFSS--VPVNQYIFTKIDETTSL--------GSVFNILAESKIGVGF 271 (296)
T ss_dssp TTTTSS--SCCCEEEEECTTTCSCC--------HHHHHHHHTCSCCCSE
T ss_pred HHHHhc--CCCCEEEEeCCCcccch--------hHHHHHHHHHCcCEEE
Confidence 555543 45679999997544321 3556677778877654
No 57
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.83 E-value=1.3e-08 Score=104.07 Aligned_cols=151 Identities=18% Similarity=0.129 Sum_probs=83.1
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCC-CCCcccccccCCCCCceeecccCCcEEEec
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM-VSPENRLLEMNPEKRTIIPTEYLGVKLVSF 255 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~-lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 255 (532)
...+|+++ |++|+||||++.+|+..++..|+||+++|.|++.+..... ++... ........+++.+.+.
T Consensus 78 ~~~~I~i~-G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~---------~~~~~~~~~~~~i~~~ 147 (355)
T 3p32_A 78 NAHRVGIT-GVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKT---------RMARLAVHPNAYIRPS 147 (355)
T ss_dssp CSEEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-------------------------CHHHHTCTTEEEECC
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchh---------hHHhhccCCCeeEEEC
Confidence 45677776 7899999999999999999999999999999987642211 11000 0001112356777764
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHH
Q 009574 256 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFS 335 (532)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~ 335 (532)
+....- ..........+..+....||++|||||+ .+...... ...+|.+++|+.++..... ..+...+
T Consensus 148 ~~~~~~------~~~~~~t~d~i~~~~~~~~~~iiiDTpG-i~~~~~~~--~~~aD~vl~V~d~~~~~~~--~~l~~~~- 215 (355)
T 3p32_A 148 PTSGTL------GGVTRATRETVVLLEAAGFDVILIETVG-VGQSEVAV--ANMVDTFVLLTLARTGDQL--QGIKKGV- 215 (355)
T ss_dssp C--CCH------HHHHHHHHHHHHHHHHTTCCEEEEEECS-CSSHHHHH--HTTCSEEEEEEESSTTCTT--TTCCTTS-
T ss_pred CCCccc------cchhHHHHHHHHHHhhCCCCEEEEeCCC-CCcHHHHH--HHhCCEEEEEECCCCCccH--HHHHHhH-
Confidence 432110 0112222233333344789999999975 55433333 3567999999987653211 0000000
Q ss_pred cCCCCEEEEEEecccc
Q 009574 336 KLKVPCIAVVENMCHF 351 (532)
Q Consensus 336 ~~~~~~~gvV~N~~~~ 351 (532)
.+.+ ..+|+|+++.
T Consensus 216 -~~~p-~ivVlNK~Dl 229 (355)
T 3p32_A 216 -LELA-DIVVVNKADG 229 (355)
T ss_dssp -GGGC-SEEEEECCCG
T ss_pred -hhcC-CEEEEECCCC
Confidence 1123 4688899764
No 58
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.65 E-value=2.9e-08 Score=94.01 Aligned_cols=46 Identities=20% Similarity=0.143 Sum_probs=41.3
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 222 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~ 222 (532)
.++...|.++||||||||++.|+|..++++|++|+++|+|+|+...
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~ 49 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAE 49 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChh
Confidence 3467788899999999999999999999999999999999987543
No 59
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.55 E-value=6.4e-08 Score=97.67 Aligned_cols=248 Identities=18% Similarity=0.195 Sum_probs=136.4
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCeeeEE
Q 009574 78 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 154 (532)
Q Consensus 78 ~~~~~~~v~~~L~~V~DPel~~~I---v~lglv~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~ 154 (532)
...+++++.+.|+++.+-.+..|| +...++.+|+-.-.+.++.-.. + ..+.+.+.+++.+..+-+-.. .
T Consensus 45 ~~~~~~~~~~~~~~~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~l~~~l~~~l~~~~-~ 116 (328)
T 3e70_C 45 VEIKEKDVDKALDELEIDLLEADVALEVVDALREKIKQKLVGKKVRIGT---D----KGKIIEEAVKEAVSEILETSR-R 116 (328)
T ss_dssp EECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCEEECC----------CHHHHHHHHHHHHHHSCCSS-C
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcccCCcc---C----HHHHHHHHHHHHHHHHhCCcc-c
Confidence 456888999999999888777777 5566666665433212222111 1 234566666666654322110 0
Q ss_pred EEcccCCCcchhhccccccccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccc
Q 009574 155 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 234 (532)
Q Consensus 155 v~l~~~p~~~~~~~~~~~~~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~ 234 (532)
+++. . . ......+.+|++. |..|+||||+...||..+...|.+|++++.|.+.......
T Consensus 117 ~~~~------~--~---~~~~~~g~vi~lv-G~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eq--------- 175 (328)
T 3e70_C 117 IDLI------E--E---IRKAEKPYVIMFV-GFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQ--------- 175 (328)
T ss_dssp CCHH------H--H---HHSSCSSEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHH---------
T ss_pred cchh------h--h---cccCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHH---------
Confidence 1110 0 0 0011335689998 6699999999999999999999999999999876431100
Q ss_pred cCCCCCceeecccCCcEEEecCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhh------hhhhhc
Q 009574 235 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL------TLCQVV 308 (532)
Q Consensus 235 ~~~~~~~i~~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~------~~~~~~ 308 (532)
.......-++.+++...... ....+.+.+.......+|+++||+++....... ......
T Consensus 176 ------l~~~~~~~gv~~v~q~~~~~---------p~~~v~e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral 240 (328)
T 3e70_C 176 ------LEEHAKRIGVKVIKHSYGAD---------PAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVT 240 (328)
T ss_dssp ------HHHHHHHTTCEEECCCTTCC---------HHHHHHHHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHH
T ss_pred ------HHHHHHHcCceEEeccccCC---------HHHHHHHHHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHh
Confidence 00001112444444221111 011111211111125799999999886431110 011223
Q ss_pred CCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEe
Q 009574 309 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 380 (532)
Q Consensus 309 ~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~ 380 (532)
..|..+++..+... .++...++.+.+ ...+.++|+|+.+...+. +..-.+...+|.|+.+.
T Consensus 241 ~~de~llvLDa~t~--~~~~~~~~~~~~-~~~it~iilTKlD~~a~~--------G~~l~~~~~~~~pi~~i 301 (328)
T 3e70_C 241 KPNLVIFVGDALAG--NAIVEQARQFNE-AVKIDGIILTKLDADARG--------GAALSISYVIDAPILFV 301 (328)
T ss_dssp CCSEEEEEEEGGGT--THHHHHHHHHHH-HSCCCEEEEECGGGCSCC--------HHHHHHHHHHTCCEEEE
T ss_pred cCCCCEEEEecHHH--HHHHHHHHHHHH-hcCCCEEEEeCcCCccch--------hHHHHHHHHHCCCEEEE
Confidence 45777777764432 344444455543 234568999997643322 34556777888776653
No 60
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.37 E-value=1.2e-06 Score=92.22 Aligned_cols=167 Identities=17% Similarity=0.217 Sum_probs=93.2
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 256 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 256 (532)
.+.+|+|+ |.+|+||||+...||..+...|.+|++.+.|.++..... .+. ......++.+++..
T Consensus 292 ~GeVI~LV-GpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~e------QL~---------~~~~r~~I~vV~Q~ 355 (503)
T 2yhs_A 292 APFVILMV-GVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVE------QLQ---------VWGQRNNIPVIAQH 355 (503)
T ss_dssp TTEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHH------HHH---------HHHHHHTCCEECCS
T ss_pred CCeEEEEE-CCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHH------HHH---------HHHHhcCceEEecc
Confidence 45799999 779999999999999999988899999999876521000 000 00001133344321
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCCh-hhhh-----hhh----h--cCCCeEEEEeCCCcchH
Q 009574 257 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD-IQLT-----LCQ----V--VPLTAAVIVTTPQKLAF 324 (532)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~-~~~~-----~~~----~--~~~d~viiV~~p~~~s~ 324 (532)
... .....+.+.+.......||+|||||++.... ..+. +.. + ..-+.+++|..+... .
T Consensus 356 ~~~---------~p~~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG-q 425 (503)
T 2yhs_A 356 TGA---------DSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG-Q 425 (503)
T ss_dssp TTC---------CHHHHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT-H
T ss_pred cCc---------CHHHHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc-H
Confidence 110 1111222222222237899999999886432 1110 000 0 012466777765432 2
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEE
Q 009574 325 IDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 379 (532)
Q Consensus 325 ~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~ 379 (532)
+....++.|++ ...+.++|+|+.+...++ +..-.+...++.|+.+
T Consensus 426 -~al~~ak~f~~-~~~itgvIlTKLD~takg--------G~~lsi~~~~~~PI~f 470 (503)
T 2yhs_A 426 -NAVSQAKLFHE-AVGLTGITLTKLDGTAKG--------GVIFSVADQFGIPIRY 470 (503)
T ss_dssp -HHHHHHHHHHH-HTCCSEEEEECGGGCSCC--------THHHHHHHHHCCCEEE
T ss_pred -HHHHHHHHHHh-hcCCCEEEEEcCCCcccc--------cHHHHHHHHHCCCEEE
Confidence 22333444443 133468999997643322 4567778888887765
No 61
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.34 E-value=3.4e-06 Score=85.62 Aligned_cols=127 Identities=14% Similarity=0.138 Sum_probs=69.3
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCC-CCCCcccccccCCCCCceeecccCCcEEEe
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT-MVSPENRLLEMNPEKRTIIPTEYLGVKLVS 254 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~-~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~ 254 (532)
+.+.+|+++ |++|+||||+..+|+..++..|.+|.++|.|++.+.... +++........ ...++..+.+
T Consensus 54 ~~~~~i~i~-G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~---------~~~~~~~i~~ 123 (341)
T 2p67_A 54 GNTLRLGVT-GTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDL---------ARAEAAFIRP 123 (341)
T ss_dssp SCSEEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTT---------TTCTTEEEEE
T ss_pred CCCEEEEEE-cCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhh---------ccCCCceeec
Confidence 345788887 699999999999999999999999999999998754321 12211100000 0012222222
Q ss_pred cCCCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc
Q 009574 255 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK 321 (532)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~ 321 (532)
..... ..+......+..+. .+.+..|+++|||||+-.. ..... ...+|.+++|+.++.
T Consensus 124 ~~~~~-----~l~g~~~~~~~~~~-~~~~~~~~i~liDTpG~~~-~~~~~--~~~aD~vl~Vvd~~~ 181 (341)
T 2p67_A 124 VPSSG-----HLGGASQRARELML-LCEAAGYDVVIVETVGVGQ-SETEV--ARMVDCFISLQIAGG 181 (341)
T ss_dssp ECC----------CHHHHHHHHHH-HHHHTTCSEEEEEEECCTT-HHHHH--HTTCSEEEEEECC--
T ss_pred Ccccc-----ccchhHHHHHHHHH-HhhccCCCEEEEeCCCccc-hHHHH--HHhCCEEEEEEeCCc
Confidence 11100 01111122233222 2234799999999987433 22222 457799999998864
No 62
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.96 E-value=8.1e-05 Score=74.10 Aligned_cols=167 Identities=16% Similarity=0.180 Sum_probs=90.8
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 256 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~ 256 (532)
.+.+|+++ |.+|+||||+...||..+...|.+|++.+.|.++..... .+.. .....++.+++..
T Consensus 101 ~g~vi~lv-G~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~------ql~~---------~~~~~~i~~v~q~ 164 (304)
T 1rj9_A 101 KGRVVLVV-GVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGT------QLSE---------WGKRLSIPVIQGP 164 (304)
T ss_dssp SSSEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTH------HHHH---------HHHHHTCCEECCC
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHH------HHHH---------HHHhcCceEEEeC
Confidence 45699999 779999999999999999988899999999987632100 0000 0000123333322
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChhh--h--------hhh--hhcCCCeEEEEeCCCcchH
Q 009574 257 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--L--------TLC--QVVPLTAAVIVTTPQKLAF 324 (532)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~--~--------~~~--~~~~~d~viiV~~p~~~s~ 324 (532)
.... +.......+.... ...+|++++|+++...... . .++ ....-+.++++..+...
T Consensus 165 ~~~~-----p~~~v~~~v~~~~----~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~-- 233 (304)
T 1rj9_A 165 EGTD-----SAALAYDAVQAMK----ARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG-- 233 (304)
T ss_dssp TTCC-----HHHHHHHHHHHHH----HHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC--
T ss_pred CCCC-----HHHHHHHHHHHHH----hCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHH--
Confidence 1110 0001112222211 2468999999987543211 0 000 01123556777776533
Q ss_pred HHHHHHHHHHH-cCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEe
Q 009574 325 IDVAKGVRMFS-KLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 380 (532)
Q Consensus 325 ~~~~~~i~~l~-~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~ 380 (532)
..+...+..+. ..+. .++|+|+.+...++ +..-.+...++.|+.+.
T Consensus 234 ~~~~~~~~~~~~~~~~--t~iivTh~d~~a~g--------g~~l~i~~~~~~pi~~i 280 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGL--TGVIVTKLDGTAKG--------GVLIPIVRTLKVPIKFV 280 (304)
T ss_dssp THHHHHHHHHHHHHCC--SEEEEECTTSSCCC--------TTHHHHHHHHCCCEEEE
T ss_pred HHHHHHHHHHHHHcCC--cEEEEECCcccccc--------cHHHHHHHHHCCCeEEE
Confidence 22333344443 3343 57899986433221 35667778888776543
No 63
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=97.92 E-value=5.2e-05 Score=76.29 Aligned_cols=166 Identities=17% Similarity=0.194 Sum_probs=108.4
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 257 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 257 (532)
++.|.+++.-.+|||||++..|..+|.++|+++..+-....+ .+ . . ..+ ++
T Consensus 152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgqtg----~~-----------------~-~-~~g---i~--- 202 (349)
T 2obn_A 152 CRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQTG----VM-----------------L-E-GDG---VA--- 202 (349)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSHHH----HH-----------------H-H-SCS---CC---
T ss_pred ceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccchh----hh-----------------h-h-cCC---cc---
Confidence 688999999999999999999999999999999884322111 00 0 0 000 00
Q ss_pred CCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCCh----hhhhhhhhcCCCeEEEEeCCCcchH---------
Q 009574 258 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD----IQLTLCQVVPLTAAVIVTTPQKLAF--------- 324 (532)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~----~~~~~~~~~~~d~viiV~~p~~~s~--------- 324 (532)
.+ ..........++.+...+. ++||++||-...|+.. ..+.+......+.++++..|....+
T Consensus 203 -~D---av~~df~aG~ve~~~~~~~-~~~d~vlVEGqGgl~~P~~~~t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p 277 (349)
T 2obn_A 203 -LD---AVRVDFAAGAVEQMVMRYG-KNYDILHIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIP 277 (349)
T ss_dssp -GG---GSBHHHHHHHHHHHHHHHT-TTCSEEEECCCCCTTSTTCCTHHHHHHHHCCSEEEEEEETTCCBCSSCTTSBCC
T ss_pred -hh---HHHHHHHhhhHHHHHHHhc-cCCCEEEEeCCCcccCcChHhHHHHHHHcCCCeEEEEECCCCceECCCCccCCC
Confidence 00 0001112234445554443 6899999998776532 2223333445688999999877666
Q ss_pred --HHHHHHHHHHHc-----CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCcEEeccC
Q 009574 325 --IDVAKGVRMFSK-----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPI 383 (532)
Q Consensus 325 --~~~~~~i~~l~~-----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~IP~ 383 (532)
.....+++.+.. .+.++.|+++|....+.. ..++..+.+++.+|.|.+..+.+
T Consensus 278 ~l~~~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~~~~~------~~~~~~~~ie~~~glPv~d~~r~ 337 (349)
T 2obn_A 278 PLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLDEY------AAKEAIAHTIAETGLPCTDVVRF 337 (349)
T ss_dssp CHHHHHHHHHHHHHTTTTSCCCCEEEEEEECTTSCHH------HHHHHHHHHHHHHCSCEECHHHH
T ss_pred CHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCCHH------HHHHHHHHHHHHHCCCEEEEecC
Confidence 777777777755 678899999998543321 12357889999999988776554
No 64
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=97.91 E-value=6.5e-06 Score=84.89 Aligned_cols=52 Identities=29% Similarity=0.396 Sum_probs=47.0
Q ss_pred CcceEEEEEeCcC---CCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcc
Q 009574 176 KISNIVAVSSCKG---GVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN 230 (532)
Q Consensus 176 ~~~kiIav~s~KG---GvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~ 230 (532)
+..|+|.|+|..+ |.||||+++|||..||+.|+||+++ .+.|++...||...
T Consensus 55 ~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLLi---LR~Psl~~~FGikg 109 (557)
T 3pzx_A 55 PDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVC---LREPSLGPSFGIKG 109 (557)
T ss_dssp CCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEEE---ECCCCSHHHHHTCC
T ss_pred CCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEEE---eCCCCccccCCCCC
Confidence 3468999999999 9999999999999999999999998 89999888777653
No 65
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=97.87 E-value=2.9e-05 Score=87.73 Aligned_cols=88 Identities=11% Similarity=0.057 Sum_probs=57.6
Q ss_pred CCCEEEEcCCCCCCh------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccc
Q 009574 285 ELDYLVIDMPPGTGD------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRY 358 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~------~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~ 358 (532)
.+|++||....|+.. ....++.... .-+++|+.....++..+.-.++.+...++++.|+|+|++..
T Consensus 201 ~~D~vvVEGaGGl~~p~~~~~~~adla~~l~-~PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~~------- 272 (831)
T 4a0g_A 201 SDLLCLVETAGGVASPGPSGTLQCDLYRPFR-LPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGL------- 272 (831)
T ss_dssp -CEEEEEECCSSTTCBCTTSCBHHHHTGGGC-CCEEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCSS-------
T ss_pred cCCEEEEECCCCccCCCCCCccHHHHHHHcC-CCEEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCCch-------
Confidence 799999998775431 1112221111 34788888888888888888888888899999999997531
Q ss_pred cccCCchHHHHHH----HhCCCcEEeccCch
Q 009574 359 YPFGRGSGSQVVQ----QFGIPHLFDLPIRP 385 (532)
Q Consensus 359 ~~~~~~~~~~l~~----~~g~~~l~~IP~~~ 385 (532)
...+.+.+ ..+++.++.+|+.+
T Consensus 273 -----~~~~~l~~~l~~~~~v~vLg~lP~~~ 298 (831)
T 4a0g_A 273 -----VNEVPLTSYLRNKVPVLVLPPVPKDP 298 (831)
T ss_dssp -----CTHHHHHHHTTTSSCEEEECCCCCCT
T ss_pred -----hHHHHHHHHHHhCCCceeeCCCCCCC
Confidence 12333333 34555577788764
No 66
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.66 E-value=0.00047 Score=70.08 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=37.1
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
+.+|+++ |..|+||||+...||..+...|.+|++.+.|.+.
T Consensus 157 g~vi~lv-G~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r 197 (359)
T 2og2_A 157 PAVIMIV-GVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 197 (359)
T ss_dssp SEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CeEEEEE-cCCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence 5699999 6799999999999999999888999999999765
No 67
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.65 E-value=0.0002 Score=79.50 Aligned_cols=93 Identities=19% Similarity=0.062 Sum_probs=62.2
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCC
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 363 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 363 (532)
..|++.|||||+...........+..+|.+++|+.+...........++.+...+++++ +++|+++..... ..
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~i-lviNKiD~~~~~------~~ 152 (704)
T 2rdo_7 80 EPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRI-AFVNKMDRMGAN------FL 152 (704)
T ss_pred CceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEE-EEEeCCCccccc------HH
Confidence 56899999999854432233334567899999999887655566677777777788855 778997643321 12
Q ss_pred chHHHHHHHhCCCcE-EeccC
Q 009574 364 GSGSQVVQQFGIPHL-FDLPI 383 (532)
Q Consensus 364 ~~~~~l~~~~g~~~l-~~IP~ 383 (532)
...+++.+.++...+ ..+|.
T Consensus 153 ~~~~~l~~~l~~~~~~~~~Pi 173 (704)
T 2rdo_7 153 KVVNQIKTRLGANPVPLQLAI 173 (704)
T ss_pred HHHHHHHHHhCCCceeEEccc
Confidence 467788888876533 33553
No 68
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.51 E-value=0.00092 Score=66.36 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=37.3
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
.+.++++. |..|+||||+...||..+...|.+|++.+.|.+.
T Consensus 99 ~g~vi~lv-G~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 99 KPAVIMIV-GVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 140 (302)
T ss_dssp SCEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CCcEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 35699999 6799999999999999999888999999988765
No 69
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.46 E-value=0.00051 Score=63.40 Aligned_cols=38 Identities=29% Similarity=0.375 Sum_probs=33.0
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+.++.++ ++| .||||.|..+|..++.+|+||+++=+.-
T Consensus 29 g~i~v~t-G~G-kGKTTaA~GlalRA~g~G~rV~~vQF~K 66 (196)
T 1g5t_A 29 GIIIVFT-GNG-KGKTTAAFGTAARAVGHGKNVGVVQFIK 66 (196)
T ss_dssp CCEEEEE-SSS-SCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ceEEEEC-CCC-CCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 4455555 887 9999999999999999999999998776
No 70
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.38 E-value=0.00048 Score=73.81 Aligned_cols=89 Identities=13% Similarity=0.025 Sum_probs=59.9
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009574 283 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 362 (532)
Q Consensus 283 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 362 (532)
++.+.+.|+|||+...........+..+|.+++|+.+...........++.+...+++ +-+++|+++..... .
T Consensus 79 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~------~ 151 (529)
T 2h5e_A 79 YHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRD------P 151 (529)
T ss_dssp ETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCC-EEEEEECTTSCCSC------H
T ss_pred ECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCC-EEEEEcCcCCcccc------H
Confidence 3678899999987533222223335678999999988765445566777777777888 56788997653321 1
Q ss_pred CchHHHHHHHhCCCcE
Q 009574 363 RGSGSQVVQQFGIPHL 378 (532)
Q Consensus 363 ~~~~~~l~~~~g~~~l 378 (532)
.+..+++.+.++.+..
T Consensus 152 ~~~~~~i~~~l~~~~~ 167 (529)
T 2h5e_A 152 MELLDEVENELKIGCA 167 (529)
T ss_dssp HHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHhCCCcc
Confidence 1357788888886543
No 71
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.26 E-value=0.00036 Score=70.97 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=34.9
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
++++.|+ +++|+||||+|.++|..+++.|.+|++||++.
T Consensus 63 G~ii~I~-G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 63 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp TSEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3466666 89999999999999999999999999999975
No 72
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.12 E-value=0.00059 Score=61.62 Aligned_cols=42 Identities=24% Similarity=0.200 Sum_probs=36.0
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
+|++|.|++ ..|+||||++..|+..|..+|++|.+|..|+..
T Consensus 3 ~~~~i~i~G-~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~ 44 (169)
T 1xjc_A 3 AMNVWQVVG-YKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG 44 (169)
T ss_dssp -CCEEEEEC-CTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred CCEEEEEEC-CCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCC
Confidence 567889885 669999999999999999999999999999864
No 73
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.03 E-value=0.0011 Score=67.55 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=34.5
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
.++.|+ +..|+||||+|.++|..+++.|.+|++||++.
T Consensus 75 ~li~I~-G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 75 RITEIY-GPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp SEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cEEEEE-cCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 467776 88999999999999999999999999999985
No 74
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.95 E-value=0.0084 Score=60.65 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=36.1
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 221 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s 221 (532)
..+|+++ |..|+||||+.-.|+..+...|.+|.++..|++...
T Consensus 74 ~~~v~lv-G~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~ 116 (349)
T 2www_A 74 AFRVGLS-GPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCT 116 (349)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCC
Confidence 5678888 999999999999999999888999999999997653
No 75
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.82 E-value=0.0049 Score=68.17 Aligned_cols=88 Identities=17% Similarity=0.084 Sum_probs=58.5
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009574 283 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 362 (532)
Q Consensus 283 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 362 (532)
+..+.+.|||||+...........+..+|.+++|+.+...........+..+...+++++ +|+|+++..... .
T Consensus 74 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~~~------~ 146 (691)
T 1dar_A 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-AFANKMDKTGAD------L 146 (691)
T ss_dssp ETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECTTSTTCC------H
T ss_pred ECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCcccCC------H
Confidence 357889999998754433333333556899999998876555555666777777788855 778997643321 1
Q ss_pred CchHHHHHHHhCCCc
Q 009574 363 RGSGSQVVQQFGIPH 377 (532)
Q Consensus 363 ~~~~~~l~~~~g~~~ 377 (532)
....+++.+.++...
T Consensus 147 ~~~~~~l~~~l~~~~ 161 (691)
T 1dar_A 147 WLVIRTMQERLGARP 161 (691)
T ss_dssp HHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHhCCCc
Confidence 235677778777543
No 76
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.75 E-value=0.021 Score=51.53 Aligned_cols=87 Identities=14% Similarity=0.175 Sum_probs=46.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 358 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~~~~~~~~ 358 (532)
..+++.|+|+|+...........+..+|.+++|.... ..++..+...++.+.. .+.+ +-+|+|+++...+.
T Consensus 67 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~~--- 142 (190)
T 3con_A 67 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVP-MVLVGNKCDLPTRT--- 142 (190)
T ss_dssp EEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCCC---
T ss_pred EEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCcCCccc---
Confidence 3567999999874322222222234568888877655 3455666555555443 2455 56889997754321
Q ss_pred cccCCchHHHHHHHhCCC
Q 009574 359 YPFGRGSGSQVVQQFGIP 376 (532)
Q Consensus 359 ~~~~~~~~~~l~~~~g~~ 376 (532)
...+..+++.+.++.+
T Consensus 143 --~~~~~~~~~~~~~~~~ 158 (190)
T 3con_A 143 --VDTKQAHELAKSYGIP 158 (190)
T ss_dssp --SCHHHHHHHHHHHTCC
T ss_pred --CCHHHHHHHHHHcCCe
Confidence 1223456666666643
No 77
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=96.73 E-value=0.0066 Score=62.68 Aligned_cols=69 Identities=16% Similarity=0.240 Sum_probs=49.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
..+.+.|+|||+-..........+..+|.+++|+.+.........+.+..+...+++.+-+++|+++..
T Consensus 73 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~ 141 (405)
T 2c78_A 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMV 141 (405)
T ss_dssp SSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECcccc
Confidence 567899999976433222333335568999999988765556667777788888888667889998753
No 78
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.65 E-value=0.0026 Score=64.40 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=35.0
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+.++.+. +..|+||||++.++|..+++.|.+|++||++.
T Consensus 61 G~iv~I~-G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 61 GRVIEIY-GPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3577777 88999999999999999999999999999985
No 79
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.64 E-value=0.011 Score=59.44 Aligned_cols=42 Identities=29% Similarity=0.332 Sum_probs=37.2
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
.+.+++++ |..|+||||+.-.|+..+...+.+|.++..|++.
T Consensus 54 ~g~~v~i~-G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 54 RAIRVGIT-GVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 95 (337)
T ss_dssp CSEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence 35688888 9999999999999999998888899999999864
No 80
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.57 E-value=0.031 Score=50.37 Aligned_cols=87 Identities=10% Similarity=0.168 Sum_probs=51.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCcccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYY 359 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~---~~~~~gvV~N~~~~~~~~~~~~ 359 (532)
..+.+.|+|+|+...........+..+|.+++|...+. .++..+...++.+... +.+ +-+|.|+++.....
T Consensus 69 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~---- 143 (189)
T 2gf9_A 69 KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQ-VILVGNKCDLEDER---- 143 (189)
T ss_dssp EEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGC----
T ss_pred eEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECccccccc----
Confidence 35678999998743322222223456789998888754 4566666666666543 344 56888997753311
Q ss_pred ccCCchHHHHHHHhCC
Q 009574 360 PFGRGSGSQVVQQFGI 375 (532)
Q Consensus 360 ~~~~~~~~~l~~~~g~ 375 (532)
....+..+++.+.++.
T Consensus 144 ~~~~~~~~~~~~~~~~ 159 (189)
T 2gf9_A 144 VVPAEDGRRLADDLGF 159 (189)
T ss_dssp CSCHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHcCC
Confidence 1122345666666664
No 81
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.55 E-value=0.0094 Score=56.23 Aligned_cols=36 Identities=14% Similarity=0.037 Sum_probs=31.0
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 214 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID 214 (532)
+.++.++ |-.|+||||.+..++..++.+|++|+++-
T Consensus 12 G~i~lit-G~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 12 GWIEFIT-GPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp CEEEEEE-CSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEE-CCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3455554 88999999999999999999999999994
No 82
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.55 E-value=0.011 Score=65.46 Aligned_cols=87 Identities=20% Similarity=0.043 Sum_probs=56.3
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009574 283 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 362 (532)
Q Consensus 283 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 362 (532)
++.+.+.|||||+-..........+..+|.+++|+.+...........++.+...+.+++ +|+|+++..... .
T Consensus 72 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~i-lviNK~Dl~~~~------~ 144 (693)
T 2xex_A 72 WEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRI-VFVNKMDKLGAN------F 144 (693)
T ss_dssp ETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTTSTTCC------H
T ss_pred ECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEE-EEEECCCccccc------h
Confidence 357889999998854322222233456899999998876444455566677777788754 778997643311 1
Q ss_pred CchHHHHHHHhCCC
Q 009574 363 RGSGSQVVQQFGIP 376 (532)
Q Consensus 363 ~~~~~~l~~~~g~~ 376 (532)
....+++.+.++..
T Consensus 145 ~~~~~~l~~~l~~~ 158 (693)
T 2xex_A 145 EYSVSTLHDRLQAN 158 (693)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhCCC
Confidence 13567778887754
No 83
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=96.50 E-value=0.0096 Score=60.73 Aligned_cols=67 Identities=6% Similarity=-0.060 Sum_probs=49.3
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEe-cccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVEN-MCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N-~~~~ 351 (532)
+.+.+.|+|||+-..........+..+|.+++|+. .......+.+.+..+...+++.+-+++| +++.
T Consensus 58 ~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 58 EGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST 125 (370)
T ss_dssp SSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 56679999998754433333334567899999998 6666667777788888889998677888 9775
No 84
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.44 E-value=0.001 Score=71.18 Aligned_cols=88 Identities=13% Similarity=0.036 Sum_probs=60.4
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009574 283 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 362 (532)
Q Consensus 283 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 362 (532)
++.+.+.|+|||+-..........+..+|.+++|+.+...........+..+...++++ -+|+|+++..... .
T Consensus 79 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPi-ivviNK~Dl~~~~------~ 151 (528)
T 3tr5_A 79 YKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPI-MTFINKMDRDTRP------S 151 (528)
T ss_dssp ETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCE-EEEEECTTSCCSC------H
T ss_pred eCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEeCCCCcccc------H
Confidence 36788999999885433333333456789999999987755556667788888888885 5777997653221 1
Q ss_pred CchHHHHHHHhCCCc
Q 009574 363 RGSGSQVVQQFGIPH 377 (532)
Q Consensus 363 ~~~~~~l~~~~g~~~ 377 (532)
.+..+++.+.++...
T Consensus 152 ~~~l~ei~~~l~~~~ 166 (528)
T 3tr5_A 152 IELLDEIESILRIHC 166 (528)
T ss_dssp HHHHHHHHHHHCCEE
T ss_pred HHHHHHHHHhhCCCc
Confidence 135778888888643
No 85
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.42 E-value=0.053 Score=47.00 Aligned_cols=87 Identities=14% Similarity=0.165 Sum_probs=49.7
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRY 358 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~----~~~~~gvV~N~~~~~~~~~~~ 358 (532)
..+++.|+|+|+...........+..+|.+++|...+. .+...+...++.+... +.+ +-+|+|+++...+.
T Consensus 49 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~~~~--- 124 (166)
T 2ce2_X 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP-MVLVGNKSDLAART--- 124 (166)
T ss_dssp EEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCCC---
T ss_pred EEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEchhhhhcc---
Confidence 35678999998854322222222345688888877653 3455555555544432 455 56889997754321
Q ss_pred cccCCchHHHHHHHhCCC
Q 009574 359 YPFGRGSGSQVVQQFGIP 376 (532)
Q Consensus 359 ~~~~~~~~~~l~~~~g~~ 376 (532)
......+++.+.++.+
T Consensus 125 --~~~~~~~~~~~~~~~~ 140 (166)
T 2ce2_X 125 --VESRQAQDLARSYGIP 140 (166)
T ss_dssp --SCHHHHHHHHHHHTCC
T ss_pred --cCHHHHHHHHHHcCCe
Confidence 1223456666666653
No 86
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.39 E-value=0.02 Score=61.51 Aligned_cols=89 Identities=13% Similarity=0.055 Sum_probs=66.6
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009574 283 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 362 (532)
Q Consensus 283 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 362 (532)
|++|-+=|||||+-.....-....+.++|++++|+....--...+..+++.+.+.+++.+ +++|+.+..... -
T Consensus 97 ~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i-~fINK~Dr~~ad------~ 169 (548)
T 3vqt_A 97 YRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVM-TFVNKMDREALH------P 169 (548)
T ss_dssp ETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTTSCCCC------H
T ss_pred ECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceE-EEEecccchhcc------h
Confidence 678899999999854433333344678899999999988888889999999999999965 667996643221 1
Q ss_pred CchHHHHHHHhCCCcE
Q 009574 363 RGSGSQVVQQFGIPHL 378 (532)
Q Consensus 363 ~~~~~~l~~~~g~~~l 378 (532)
...++++.+.++...+
T Consensus 170 ~~~~~~i~~~l~~~~~ 185 (548)
T 3vqt_A 170 LDVMADIEQHLQIECA 185 (548)
T ss_dssp HHHHHHHHHHHTSEEE
T ss_pred hHhhhhhhhhcCCceE
Confidence 2567889999986543
No 87
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.35 E-value=0.016 Score=57.33 Aligned_cols=85 Identities=12% Similarity=-0.004 Sum_probs=50.4
Q ss_pred CCCEEEEcCCCCCChh----------hhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCEEEEEEecccccC
Q 009574 285 ELDYLVIDMPPGTGDI----------QLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 353 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~----------~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~ 353 (532)
.+.++|+|||+-.... ......+..+|.+++|+.++.. +..+....++.+...+.++ -+|+|+++...
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pv-ilV~NK~Dl~~ 136 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPV-IVVINKIDKIG 136 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCE-EEEEECGGGSS
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCE-EEEEECccCCC
Confidence 6789999998743211 1111223467999999888753 4444333367777767774 57889987541
Q ss_pred CCccccccCCchHHHHHHHhC
Q 009574 354 DGKRYYPFGRGSGSQVVQQFG 374 (532)
Q Consensus 354 ~~~~~~~~~~~~~~~l~~~~g 374 (532)
... ......+.+.+.++
T Consensus 137 ~~~----~~~~~~~~l~~~~~ 153 (308)
T 3iev_A 137 PAK----NVLPLIDEIHKKHP 153 (308)
T ss_dssp SGG----GGHHHHHHHHHHCT
T ss_pred CHH----HHHHHHHHHHHhcc
Confidence 111 11234566777765
No 88
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=96.35 E-value=0.019 Score=57.66 Aligned_cols=137 Identities=20% Similarity=0.198 Sum_probs=82.6
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCCCcccccccCCCCCceeecccCCcEEEecCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 257 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~~l~vl~~~~ 257 (532)
.+.|.+++.-.++||||++..|...|.++|++|..+-....+. +.+.. . -++..
T Consensus 169 ~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg~----li~~~-----------~----------gv~~D- 222 (350)
T 2g0t_A 169 IKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGI----LIGAD-----------A----------GYVID- 222 (350)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHHH----HTTCS-----------E----------ECCGG-
T ss_pred ceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCceee----eeccC-----------C----------CCCCC-
Confidence 6789999999999999999999999999999998865433221 11100 0 00000
Q ss_pred CCCcccccCCchHHHHHHHHHHhcccCCCCEEEEcCCCCCChh-----hhhhhhhcCCCeEEEEeCCC-----------c
Q 009574 258 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-----QLTLCQVVPLTAAVIVTTPQ-----------K 321 (532)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~-----~~~~~~~~~~d~viiV~~p~-----------~ 321 (532)
....+.....++.++.....+++|++||-...|+... .+....-...|.+++...|. .
T Consensus 223 ------~~~~~~~ag~~e~~i~~~~~~~~D~ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~ 296 (350)
T 2g0t_A 223 ------AVPADFVSGVVEKAVLKLEKTGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPK 296 (350)
T ss_dssp ------GSBGGGHHHHHHHHHHHHHHTTCSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEEECCTTCSSCTTCTTSSC
T ss_pred ------ceecchhhHHHHhhHHHhhhcCCCEEEEccCeeccccCchHHHHHHHcCCCCCEEEEEeCCCCccccCCCcccC
Confidence 0011111122222222221379999999999876422 22223333568888877654 1
Q ss_pred -chHHHHHHHHHHHHcCCCCEEEEE-Eec
Q 009574 322 -LAFIDVAKGVRMFSKLKVPCIAVV-ENM 348 (532)
Q Consensus 322 -~s~~~~~~~i~~l~~~~~~~~gvV-~N~ 348 (532)
.++.....+++.+. +.+++|++ +|.
T Consensus 297 ~~~i~~~i~~ie~l~--~~~V~gi~~lN~ 323 (350)
T 2g0t_A 297 KPDFEEERRLIETLS--NAKVIGGVSLNG 323 (350)
T ss_dssp CCCHHHHHHHHHHSS--SCEEEEEECSSC
T ss_pred CcCHHHHHHHHHHhc--CCcEEEEEEcCc
Confidence 45555555555554 68899999 996
No 89
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.35 E-value=0.0041 Score=56.52 Aligned_cols=40 Identities=35% Similarity=0.403 Sum_probs=35.1
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
+++|.+. |..|+||||++..||..|...|.+|.++|.|.-
T Consensus 13 ~~~i~l~-G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 13 GIVVWLT-GLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 4567666 999999999999999999999999999998753
No 90
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.29 E-value=0.11 Score=45.08 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=39.5
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~~ 352 (532)
.+.+.|+|+|+..............+|.+++|..... .+...+...+..+.. .+.+ +-+|.|+++..
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 121 (167)
T 1kao_A 50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVP-VILVGNKVDLE 121 (167)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECGGGG
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCccc
Confidence 4568899998744322222222345688888877654 355555555444432 2455 56888998753
No 91
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.25 E-value=0.067 Score=48.08 Aligned_cols=68 Identities=10% Similarity=0.014 Sum_probs=40.1
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc----hHHHHHHHHHHHHcC-----CCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL----AFIDVAKGVRMFSKL-----KVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~----s~~~~~~~i~~l~~~-----~~~~~gvV~N~~~~~ 352 (532)
..+.+.|+|||+...........+..+|.+++|...... .......+.+.+... +.+ +-+|.|+++..
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~p-iilv~NK~Dl~ 148 (198)
T 3t1o_A 72 FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVP-IVIQVNKRDLP 148 (198)
T ss_dssp CEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSC-EEEEEECTTST
T ss_pred CceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCC-EEEEEEchhcc
Confidence 456789999987433222222335568999999888743 222333333444332 444 56888997753
No 92
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.25 E-value=0.0098 Score=61.22 Aligned_cols=69 Identities=13% Similarity=0.180 Sum_probs=48.2
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
+.+.+.|+|||+-..........+..+|.+++|+.............+..+...+++.+-+++|+++..
T Consensus 64 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 64 AARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAV 132 (397)
T ss_dssp SSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccC
Confidence 568899999976322222222334568999999988775555666667777778888667889998753
No 93
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.21 E-value=0.0075 Score=61.05 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=34.9
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
+.++.|+ +-.|+||||++.++|..++..|.+|+.||....
T Consensus 61 G~i~~I~-GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 61 GRIVEIF-GQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp TEEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 4577777 669999999999999999999999999998753
No 94
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.19 E-value=0.0072 Score=54.75 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=36.6
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
|+++++|+ |..|+||||+...|...+...|++|..+..|+..
T Consensus 5 ~~~~i~i~-G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 5 MIPLLAFA-AWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCCEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred cceEEEEE-eCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 56788887 6889999999999999999999999999988754
No 95
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.19 E-value=0.0045 Score=59.82 Aligned_cols=40 Identities=30% Similarity=0.354 Sum_probs=34.3
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
|++|.+. |-.|+||||+|..|+..|...|+.++++|.|..
T Consensus 4 ~~lIvl~-G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILT-GLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CEEEEEE-cCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 4577776 779999999999999999989999988888753
No 96
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.19 E-value=0.18 Score=45.26 Aligned_cols=64 Identities=13% Similarity=0.029 Sum_probs=41.2
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc-CCCCEEEEEEeccc
Q 009574 286 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK-LKVPCIAVVENMCH 350 (532)
Q Consensus 286 yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~i~~l~~-~~~~~~gvV~N~~~ 350 (532)
+.+.|+|+|+...........+..+|.+++|...... +...+...+..+.. .+ ..+-+|+|+++
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN-YIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-CEEEEEEECTT
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC-CcEEEEEECCC
Confidence 7899999987322112222224567999999887654 45566666655554 34 45678899987
No 97
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.12 E-value=0.029 Score=49.07 Aligned_cols=86 Identities=13% Similarity=0.126 Sum_probs=48.2
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc--CCCCEEEEEEecccccCCCcccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK--LKVPCIAVVENMCHFDADGKRYYPF 361 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~i~~l~~--~~~~~~gvV~N~~~~~~~~~~~~~~ 361 (532)
.+.+.|+|+|+...........+..+|.+++|...+.. ++..+...++.+.. .+.+ +-+|.|+++...... .
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~----~ 127 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKIDLLDDSC----I 127 (168)
T ss_dssp EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCC-EEEEEECGGGGGGCS----S
T ss_pred EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccCcccc----c
Confidence 56789999987322111112224467888888877643 45555555554433 2455 568889987543111 1
Q ss_pred CCchHHHHHHHhCC
Q 009574 362 GRGSGSQVVQQFGI 375 (532)
Q Consensus 362 ~~~~~~~l~~~~g~ 375 (532)
..+..+++.+.++.
T Consensus 128 ~~~~~~~~~~~~~~ 141 (168)
T 1z2a_A 128 KNEEAEGLAKRLKL 141 (168)
T ss_dssp CHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHcCC
Confidence 12345556666664
No 98
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.12 E-value=0.17 Score=45.06 Aligned_cols=86 Identities=10% Similarity=0.140 Sum_probs=50.6
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCcccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYY 359 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~~~~~~~~~ 359 (532)
.+.+.|+|+|+...........+..+|.+++|..... .+...+...++.+.. .+.+ +-+|.|+++.....
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~---- 143 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD-IVLCGNKSDLEDQR---- 143 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCC-EEEEEECTTCGGGC----
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccc----
Confidence 5689999998743322222333456789999888754 455566666665543 3445 56888997753311
Q ss_pred ccCCchHHHHHHHhCC
Q 009574 360 PFGRGSGSQVVQQFGI 375 (532)
Q Consensus 360 ~~~~~~~~~l~~~~g~ 375 (532)
....+..+++.+.++.
T Consensus 144 ~~~~~~~~~~~~~~~~ 159 (195)
T 3bc1_A 144 AVKEEEARELAEKYGI 159 (195)
T ss_dssp CSCHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHcCC
Confidence 1122345556666664
No 99
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.11 E-value=0.052 Score=48.93 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=42.5
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc------CCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK------LKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~------~~~~~~gvV~N~~~~~ 352 (532)
+.+.+.|+|||+...........+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 139 (190)
T 2h57_A 65 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIP-ILFFANKMDLR 139 (190)
T ss_dssp SSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCC-EEEEEECTTST
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCe-EEEEEeCcCcc
Confidence 45679999998744332222223456799999888764 356666655555443 2444 56888997753
No 100
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.11 E-value=0.064 Score=47.57 Aligned_cols=68 Identities=16% Similarity=0.077 Sum_probs=42.3
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~~--~~~~gvV~N~~~~~ 352 (532)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+.... ...+-+|.|+++..
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 4678999998743322222222446789999888754 45566666666665432 22366888997753
No 101
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.08 E-value=0.05 Score=48.43 Aligned_cols=67 Identities=13% Similarity=0.084 Sum_probs=40.3
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~~ 352 (532)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|+|+++..
T Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 136 (187)
T 2a9k_A 65 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLE 136 (187)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCC-EEEEEECGGGG
T ss_pred EEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccc
Confidence 4678999998754332222222445788888887654 344555544444432 2555 45888998753
No 102
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.07 E-value=0.16 Score=44.30 Aligned_cols=68 Identities=15% Similarity=0.041 Sum_probs=41.2
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~~ 352 (532)
+.+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 49 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 121 (171)
T 1upt_A 49 KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI-LVVFANKQDME 121 (171)
T ss_dssp TTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTST
T ss_pred CCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCE-EEEEEECCCCc
Confidence 35678999998743222222222446789998887654 356666655554433 2444 67888997643
No 103
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.05 E-value=0.026 Score=54.36 Aligned_cols=89 Identities=12% Similarity=0.035 Sum_probs=54.7
Q ss_pred CCCCEEEEcCCCCCChhh----------h--hhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQ----------L--TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~----------~--~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
+...+.|+|||+-..... + .......+|.+++|+..+. ..........+.+.+.+ +-+|+||++.
T Consensus 46 ~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~p-vilv~NK~Dl 122 (256)
T 3iby_A 46 GEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKP-VVVALNMMDI 122 (256)
T ss_dssp TTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSC-EEEEEECHHH
T ss_pred CCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCC-EEEEEEChhc
Confidence 445789999987432211 1 1111146799999988766 34445566677777777 4578899775
Q ss_pred cCCCccccccCCchHHHHHHHhCCCcEEe
Q 009574 352 DADGKRYYPFGRGSGSQVVQQFGIPHLFD 380 (532)
Q Consensus 352 ~~~~~~~~~~~~~~~~~l~~~~g~~~l~~ 380 (532)
..... .....+.+.+.+|.+++..
T Consensus 123 ~~~~~-----~~~~~~~l~~~lg~~vi~~ 146 (256)
T 3iby_A 123 AEHRG-----ISIDTEKLESLLGCSVIPI 146 (256)
T ss_dssp HHHTT-----CEECHHHHHHHHCSCEEEC
T ss_pred CCcCC-----cHHHHHHHHHHcCCCEEEE
Confidence 33211 1124677888899876654
No 104
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.02 E-value=0.14 Score=46.64 Aligned_cols=87 Identities=14% Similarity=0.224 Sum_probs=50.1
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRY 358 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~i~~l~~~----~~~~~gvV~N~~~~~~~~~~~ 358 (532)
..+.+.|+|+|+...........+..+|.+++|...+ ..++..+...+..+... +.+ +-+|.|+++.....
T Consensus 70 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~--- 145 (201)
T 3oes_A 70 DEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVP-VVLVGNKADLSPER--- 145 (201)
T ss_dssp -CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCC-EEEEEECTTCGGGC---
T ss_pred EEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCcccc---
Confidence 4677899999874322222222244678888887765 44666677666666553 455 56888997753211
Q ss_pred cccCCchHHHHHHHhCC
Q 009574 359 YPFGRGSGSQVVQQFGI 375 (532)
Q Consensus 359 ~~~~~~~~~~l~~~~g~ 375 (532)
.......+.+.+.++.
T Consensus 146 -~v~~~~~~~~~~~~~~ 161 (201)
T 3oes_A 146 -EVQAVEGKKLAESWGA 161 (201)
T ss_dssp -CSCHHHHHHHHHHHTC
T ss_pred -ccCHHHHHHHHHHhCC
Confidence 1122344556666653
No 105
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.97 E-value=0.076 Score=47.03 Aligned_cols=86 Identities=10% Similarity=0.153 Sum_probs=46.9
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCEEEEEEecccccCCCccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFDADGKRYYP 360 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~---~~~~~~gvV~N~~~~~~~~~~~~~ 360 (532)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++..... .
T Consensus 59 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~----~ 133 (180)
T 2g6b_A 59 KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVA-LMLLGNKVDSAHER----V 133 (180)
T ss_dssp EEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECCSTTSCC----C
T ss_pred EEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccCccc----c
Confidence 4578899998743322222222446788888887754 355555555555544 2344 56888997754321 1
Q ss_pred cCCchHHHHHHHhCC
Q 009574 361 FGRGSGSQVVQQFGI 375 (532)
Q Consensus 361 ~~~~~~~~l~~~~g~ 375 (532)
...+..+++.+.++.
T Consensus 134 ~~~~~~~~~~~~~~~ 148 (180)
T 2g6b_A 134 VKREDGEKLAKEYGL 148 (180)
T ss_dssp SCHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHcCC
Confidence 122344555666664
No 106
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.94 E-value=0.0063 Score=55.15 Aligned_cols=38 Identities=32% Similarity=0.310 Sum_probs=32.8
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
|++|.|. |-.|+||||++..|+..|...|+++..+|.|
T Consensus 1 M~~I~i~-G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 1 MKIGIVT-GIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp CEEEEEE-ECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 4567776 7899999999999999999889999999754
No 107
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.87 E-value=0.26 Score=44.04 Aligned_cols=68 Identities=7% Similarity=-0.015 Sum_probs=41.9
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcC----CCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~i~~l~~~----~~~~~gvV~N~~~~~ 352 (532)
+.+.+.|+|+|+...........+..+|.+++|...+.. ++..+...+..+... +.+ +-+|.|+++..
T Consensus 58 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~ 130 (187)
T 1zj6_A 58 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVK 130 (187)
T ss_dssp TTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCE-EEEEEECTTST
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCe-EEEEEECCCCc
Confidence 346789999987432222222224567999998887554 677777666666542 344 66888997653
No 108
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.86 E-value=0.036 Score=50.11 Aligned_cols=87 Identities=11% Similarity=0.163 Sum_probs=50.7
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCcccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYY 359 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~i~~l~~~---~~~~~gvV~N~~~~~~~~~~~~ 359 (532)
..+.+.|+|+|+...........+..+|.+++|...+ ..++..+...++.+... +.+ +-+|.|+++.....
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~---- 144 (191)
T 3dz8_A 70 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQ-VILVGNKCDMEEER---- 144 (191)
T ss_dssp TTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGC----
T ss_pred EEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCcccc----
Confidence 4567899999763221122222345678888888775 44566666666666552 344 56888997753211
Q ss_pred ccCCchHHHHHHHhCC
Q 009574 360 PFGRGSGSQVVQQFGI 375 (532)
Q Consensus 360 ~~~~~~~~~l~~~~g~ 375 (532)
....+..+.+.+.++.
T Consensus 145 ~~~~~~~~~~~~~~~~ 160 (191)
T 3dz8_A 145 VVPTEKGQLLAEQLGF 160 (191)
T ss_dssp CSCHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHcCC
Confidence 1122345566666664
No 109
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.85 E-value=0.1 Score=45.79 Aligned_cols=67 Identities=18% Similarity=0.123 Sum_probs=38.5
Q ss_pred CCCEEEEcCCCCCC--hhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC----CCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTG--DIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~--~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~i~~l~~~----~~~~~gvV~N~~~~~ 352 (532)
.+.+.++|+|+... ...+.......+|.+++|...+ ..++..+...+..+... +.+ +-+|.|+++..
T Consensus 51 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl~ 124 (175)
T 2nzj_A 51 DTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVP-IILVGNKADLA 124 (175)
T ss_dssp EEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CC-EEEEEECTTCT
T ss_pred EEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCC-EEEEEEChhhc
Confidence 45688999986432 1112222233468888877654 45666676666666553 455 56888997754
No 110
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.84 E-value=0.18 Score=44.44 Aligned_cols=67 Identities=13% Similarity=0.039 Sum_probs=36.5
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc-------CCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK-------LKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~-------~~~~~~gvV~N~~~~ 351 (532)
..+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.. .+.+ +-+|.|+++.
T Consensus 56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 130 (182)
T 1ky3_A 56 KVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP-FVILGNKIDA 130 (182)
T ss_dssp CCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCC-EEEEEECTTS
T ss_pred cEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCc-EEEEEECCcc
Confidence 35678999998743222222222446788888887654 355555555444432 3444 5688899775
No 111
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.83 E-value=0.12 Score=45.49 Aligned_cols=87 Identities=13% Similarity=0.119 Sum_probs=51.0
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcC-----CCCEEEEEEecccccCCCccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL-----KVPCIAVVENMCHFDADGKRY 358 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~i~~l~~~-----~~~~~gvV~N~~~~~~~~~~~ 358 (532)
.+.+.|+|+|+...........+..+|.+++|...+.. ++..+...++.+... +.+.+-+|.|+++.....
T Consensus 55 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~--- 131 (178)
T 2hxs_A 55 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMR--- 131 (178)
T ss_dssp EEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGC---
T ss_pred EEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccccc---
Confidence 36789999987543222222224567999999887643 555555555555442 556577899998754311
Q ss_pred cccCCchHHHHHHHhCC
Q 009574 359 YPFGRGSGSQVVQQFGI 375 (532)
Q Consensus 359 ~~~~~~~~~~l~~~~g~ 375 (532)
....+..+++.+.++.
T Consensus 132 -~~~~~~~~~~~~~~~~ 147 (178)
T 2hxs_A 132 -TIKPEKHLRFCQENGF 147 (178)
T ss_dssp -SSCHHHHHHHHHHHTC
T ss_pred -ccCHHHHHHHHHHcCC
Confidence 1112344555565554
No 112
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.82 E-value=0.12 Score=46.51 Aligned_cols=68 Identities=10% Similarity=0.056 Sum_probs=42.3
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~~ 352 (532)
..+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~ 137 (188)
T 1zd9_A 65 GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP-VLVLGNKRDLP 137 (188)
T ss_dssp TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTST
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCC-EEEEEECCCCc
Confidence 56778999998743222222222456789999888654 466666665555433 3455 56888997653
No 113
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.81 E-value=0.11 Score=45.99 Aligned_cols=86 Identities=10% Similarity=0.153 Sum_probs=46.5
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCcccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYY 359 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~~~~~~~~~ 359 (532)
.+.+.|+|+|+..............+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++.....
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~---- 127 (181)
T 3t5g_A 53 EYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP-IMLVGNKKDLHMER---- 127 (181)
T ss_dssp EEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CC-EEEEEECTTCTTTC----
T ss_pred EEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhcc----
Confidence 4678999998743221111222345788888877654 455555555544432 2455 55888997753221
Q ss_pred ccCCchHHHHHHHhCC
Q 009574 360 PFGRGSGSQVVQQFGI 375 (532)
Q Consensus 360 ~~~~~~~~~l~~~~g~ 375 (532)
....+..+++.+.++.
T Consensus 128 ~~~~~~~~~~~~~~~~ 143 (181)
T 3t5g_A 128 VISYEEGKALAESWNA 143 (181)
T ss_dssp CSCHHHHHHHHHHTTC
T ss_pred eecHHHHHHHHHHhCC
Confidence 1222345556666654
No 114
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=95.78 E-value=0.029 Score=59.71 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=41.4
Q ss_pred CcceEEEEE-eCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCC
Q 009574 176 KISNIVAVS-SCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 221 (532)
Q Consensus 176 ~~~kiIav~-s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s 221 (532)
.|+|-|.|+ +.-.|+||+++|+.|+..|.++|+||..+-+||+-+-
T Consensus 10 ~~~~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~~py~n~ 56 (550)
T 1vco_A 10 RPRKYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNV 56 (550)
T ss_dssp CCCEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECSSCS
T ss_pred cceeEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeeccccccc
Confidence 367899999 8899999999999999999999999999999986543
No 115
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.77 E-value=0.0093 Score=55.50 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=33.6
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
.++|+|+ |.+|+||||+..+|+..+... ++|.+|+.|++
T Consensus 30 ~~~i~i~-G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~ 68 (221)
T 2wsm_A 30 TVAVNIM-GAIGSGKTLLIERTIERIGNE-VKIGAMLGDVV 68 (221)
T ss_dssp CEEEEEE-ECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCC
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHHHhccC-CeEEEEecCCC
Confidence 4577777 799999999999999988665 89999999985
No 116
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.76 E-value=0.07 Score=46.62 Aligned_cols=85 Identities=11% Similarity=0.168 Sum_probs=47.9
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 360 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 360 (532)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++...+.
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~----- 124 (170)
T 1g16_A 51 KVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRV----- 124 (170)
T ss_dssp EEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTCC-----
T ss_pred EEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCCcCc-----
Confidence 4678999998732211111122345688888887654 3555566665555442 344 56889998763211
Q ss_pred cCCchHHHHHHHhCC
Q 009574 361 FGRGSGSQVVQQFGI 375 (532)
Q Consensus 361 ~~~~~~~~l~~~~g~ 375 (532)
...+..+++.+.++.
T Consensus 125 ~~~~~~~~~~~~~~~ 139 (170)
T 1g16_A 125 VTADQGEALAKELGI 139 (170)
T ss_dssp SCHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHcCC
Confidence 122345566666664
No 117
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.75 E-value=0.14 Score=46.14 Aligned_cols=68 Identities=18% Similarity=0.169 Sum_probs=43.5
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcC-----------CCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL-----------KVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~i~~l~~~-----------~~~~~gvV~N~~~~ 351 (532)
..+.+.|+|||+...........+..+|.+++|...+.. ++..+...+..+... +.+ +-+|.|+++.
T Consensus 61 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl 139 (199)
T 4bas_A 61 GRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVP-FLFFANKMDA 139 (199)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCC-EEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCC-EEEEEECcCC
Confidence 567899999987433222222224467899998887644 567776666555443 555 5578899765
Q ss_pred c
Q 009574 352 D 352 (532)
Q Consensus 352 ~ 352 (532)
.
T Consensus 140 ~ 140 (199)
T 4bas_A 140 A 140 (199)
T ss_dssp T
T ss_pred C
Confidence 3
No 118
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.75 E-value=0.043 Score=54.13 Aligned_cols=68 Identities=22% Similarity=0.172 Sum_probs=41.6
Q ss_pred CCCCEEEEcCCCCCCh--------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC--CCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGD--------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL--KVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~--------~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~--~~~~~gvV~N~~~~~ 352 (532)
+.+.++|+|||+-... .......+..+|.+++|+..+..--..-..+++.+++. +.+ +-+|+|+++..
T Consensus 53 ~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p-~ilV~NK~Dl~ 130 (301)
T 1wf3_A 53 GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVP-ILLVGNKLDAA 130 (301)
T ss_dssp TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSC-EEEEEECGGGC
T ss_pred CCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCC-EEEEEECcccC
Confidence 5667999999874331 11122234568999999887543112234555667665 666 45788997753
No 119
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.75 E-value=0.4 Score=41.44 Aligned_cols=68 Identities=9% Similarity=0.003 Sum_probs=42.3
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~----~~~~~gvV~N~~~~~ 352 (532)
+.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++..
T Consensus 42 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 114 (164)
T 1r8s_A 42 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQDLP 114 (164)
T ss_dssp SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTST
T ss_pred CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCe-EEEEEECcCCc
Confidence 45678999998753322222223456788888887654 4566666666555432 344 66888997653
No 120
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=95.73 E-value=0.013 Score=64.09 Aligned_cols=88 Identities=11% Similarity=0.121 Sum_probs=64.9
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009574 283 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 362 (532)
Q Consensus 283 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 362 (532)
|++|-+-|||||+-.....-....+..+|++++|+....--...+...++.+.+.+++.+ +++|+.+..... -
T Consensus 64 ~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i-~~INKmDr~~a~------~ 136 (638)
T 3j25_A 64 WENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTI-FFINKIDQNGID------L 136 (638)
T ss_dssp CSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCE-ECCEECCSSSCC------S
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeE-EEEeccccccCC------H
Confidence 578889999999866655444555778899999998876666678888999999999975 667996643221 1
Q ss_pred CchHHHHHHHhCCCc
Q 009574 363 RGSGSQVVQQFGIPH 377 (532)
Q Consensus 363 ~~~~~~l~~~~g~~~ 377 (532)
....+++.+.++...
T Consensus 137 ~~~~~~i~~~l~~~~ 151 (638)
T 3j25_A 137 STVYQDIKEKLSAEI 151 (638)
T ss_dssp HHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHhCCCc
Confidence 246788888887544
No 121
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.70 E-value=0.1 Score=47.57 Aligned_cols=68 Identities=13% Similarity=0.086 Sum_probs=42.3
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~~--~~~~gvV~N~~~~~ 352 (532)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+.... ...+-+|.|+++..
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (206)
T 2bcg_Y 56 TVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126 (206)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 4678999998743322222223456788999888754 45666666666655422 22356888997754
No 122
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.70 E-value=0.063 Score=46.69 Aligned_cols=68 Identities=13% Similarity=0.079 Sum_probs=39.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~~ 352 (532)
..+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 50 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 122 (168)
T 1u8z_A 50 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLE 122 (168)
T ss_dssp EEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSC-EEEEEECGGGG
T ss_pred EEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECcccc
Confidence 34678999998743322222222345788888877654 355555554444432 2455 56888998754
No 123
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.69 E-value=0.014 Score=53.88 Aligned_cols=41 Identities=27% Similarity=0.294 Sum_probs=35.7
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
+.+|+++ |..|+||||++..|+..+...|.+|.+++.|...
T Consensus 22 ~~~i~i~-G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 22 RLVLGID-GLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp SEEEEEE-ECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 4577877 8899999999999999998888899999988754
No 124
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.66 E-value=0.08 Score=47.84 Aligned_cols=69 Identities=22% Similarity=0.171 Sum_probs=43.1
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~~--~~~~gvV~N~~~~~ 352 (532)
..+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+.... ...+-+|.|+++..
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 70 ELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS 141 (192)
T ss_dssp SEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 45678999998743222222223456788888887654 45666666666665432 22466888998754
No 125
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.65 E-value=0.06 Score=47.04 Aligned_cols=68 Identities=21% Similarity=0.159 Sum_probs=41.8
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~~--~~~~gvV~N~~~~~ 352 (532)
.+.+.|+|+|+...........+..+|.+++|...+. .+...+...++.+...+ ...+-+|.|+++..
T Consensus 54 ~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 54 LHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 124 (170)
T ss_dssp EEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred EEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence 4678999998743222222222456788888887654 45566666666665432 22466788997753
No 126
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.63 E-value=0.012 Score=55.56 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=34.6
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
.++.++ |..|+||||++.++|..++..|.+|++++.+..
T Consensus 24 ~~~~i~-G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 24 NVVLLS-GGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 466666 889999999999999999999999999998863
No 127
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.55 E-value=0.11 Score=46.69 Aligned_cols=87 Identities=14% Similarity=0.195 Sum_probs=50.4
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 360 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 360 (532)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...++.+... +.+ +-+|.|+++..... .
T Consensus 64 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~~~----~ 138 (196)
T 3tkl_A 64 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTTKK----V 138 (196)
T ss_dssp EEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTC----C
T ss_pred EEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECccccccc----c
Confidence 3678999998743222222223456789998887654 4555556565555443 344 56788997754321 1
Q ss_pred cCCchHHHHHHHhCCC
Q 009574 361 FGRGSGSQVVQQFGIP 376 (532)
Q Consensus 361 ~~~~~~~~l~~~~g~~ 376 (532)
......+++.+.++.+
T Consensus 139 ~~~~~~~~~~~~~~~~ 154 (196)
T 3tkl_A 139 VDYTTAKEFADSLGIP 154 (196)
T ss_dssp SCHHHHHHHHHHTTCC
T ss_pred cCHHHHHHHHHHcCCc
Confidence 1223456666676654
No 128
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.54 E-value=0.11 Score=45.48 Aligned_cols=87 Identities=13% Similarity=0.110 Sum_probs=46.5
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCEEEEEEecccccCCCcccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFDADGKRYY 359 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~---~~~~~~gvV~N~~~~~~~~~~~~ 359 (532)
..+.+.|+|+|+...........+..+|.+++|...+. .++..+...++.+.. .+.+ +-+|.|+++.....
T Consensus 53 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~---- 127 (170)
T 1z08_A 53 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEIC-LCIVGNKIDLEKER---- 127 (170)
T ss_dssp CEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSE-EEEEEECGGGGGGC----
T ss_pred EEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECccccccc----
Confidence 34578899998743222222222345788888887654 455666655555543 2344 56889998754321
Q ss_pred ccCCchHHHHHHHhCC
Q 009574 360 PFGRGSGSQVVQQFGI 375 (532)
Q Consensus 360 ~~~~~~~~~l~~~~g~ 375 (532)
....+..+++.+.++.
T Consensus 128 ~~~~~~~~~~~~~~~~ 143 (170)
T 1z08_A 128 HVSIQEAESYAESVGA 143 (170)
T ss_dssp CSCHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHcCC
Confidence 1112344555565553
No 129
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.49 E-value=0.063 Score=47.45 Aligned_cols=68 Identities=12% Similarity=0.102 Sum_probs=40.0
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
+...+.|+|||+..............+|.+++|...+..........++.+...+.+ +-+|.|+++..
T Consensus 53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-~ilv~nK~Dl~ 120 (178)
T 2lkc_A 53 NDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVP-IIVAINKMDKP 120 (178)
T ss_dssp TTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCC-EEEEEETTTSS
T ss_pred CCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCC-EEEEEECccCC
Confidence 345678889987432222222223456888888876554334444555566555666 56888997643
No 130
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=95.47 E-value=0.054 Score=57.61 Aligned_cols=44 Identities=30% Similarity=0.367 Sum_probs=39.9
Q ss_pred ceEEEEE-eCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCC
Q 009574 178 SNIVAVS-SCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 221 (532)
Q Consensus 178 ~kiIav~-s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s 221 (532)
+|-|.|+ +.-.|+||+++++.|+..|+++|+||..+-+||+-+-
T Consensus 3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~~py~n~ 47 (545)
T 1s1m_A 3 TNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINV 47 (545)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECCSCS
T ss_pred ceEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeeccccccC
Confidence 5788888 8899999999999999999999999999999976543
No 131
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.44 E-value=0.036 Score=51.73 Aligned_cols=37 Identities=14% Similarity=-0.051 Sum_probs=32.0
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 214 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID 214 (532)
.+++..++ |--|.||||.+..+|..+..+|++|+++-
T Consensus 27 ~G~l~vit-G~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 27 NGWIEVIC-GSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp SCEEEEEE-CSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 34555555 88899999999999999999999999985
No 132
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.40 E-value=0.11 Score=45.77 Aligned_cols=68 Identities=9% Similarity=0.051 Sum_probs=41.0
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~---~~~~~~gvV~N~~~~~ 352 (532)
..+.+.|+|+|+...........+..+|.+++|...+. .+...+...+..+.. .+.+ +-+|.|+++..
T Consensus 62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 133 (179)
T 1z0f_A 62 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKADLE 133 (179)
T ss_dssp EEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCG
T ss_pred eEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccc
Confidence 34678999998743222222222456788988888764 355555555555543 2333 66888997753
No 133
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.38 E-value=0.062 Score=46.57 Aligned_cols=66 Identities=6% Similarity=-0.051 Sum_probs=37.3
Q ss_pred CCCEEEEcCCCCCCh-------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 285 ELDYLVIDMPPGTGD-------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~-------~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
...+.|+|||+.... ..........+|.+++|......-........+.+...+.+ +-+|.|+++.
T Consensus 48 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 120 (161)
T 2dyk_A 48 RGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKP-VILVATKVDD 120 (161)
T ss_dssp TEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCC-EEEEEECCCS
T ss_pred CceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCC-EEEEEECccc
Confidence 446889999874331 11111224467888888876652111123444555555666 5688899764
No 134
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.37 E-value=0.076 Score=46.32 Aligned_cols=69 Identities=14% Similarity=0.096 Sum_probs=41.9
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~~--~~~~gvV~N~~~~~ 352 (532)
..+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+.... ...+-+|.|+++..
T Consensus 53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 53 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 35678999998743322222223456788988888754 45666666666555432 22356777998753
No 135
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.33 E-value=0.14 Score=46.84 Aligned_cols=86 Identities=12% Similarity=0.193 Sum_probs=49.3
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 360 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 360 (532)
.+.+.|+|||+...........+..+|.+++|..... .++..+...+..+... +.+ +-+|+|+++...+.
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~----- 141 (213)
T 3cph_A 68 KVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRV----- 141 (213)
T ss_dssp EEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSE-EEEEEECTTCSSCC-----
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCcccc-----
Confidence 3678999998732211112222456788999888764 3555555555555442 333 56888998763211
Q ss_pred cCCchHHHHHHHhCCC
Q 009574 361 FGRGSGSQVVQQFGIP 376 (532)
Q Consensus 361 ~~~~~~~~l~~~~g~~ 376 (532)
...+..+++.+.++.+
T Consensus 142 ~~~~~~~~~~~~~~~~ 157 (213)
T 3cph_A 142 VTADQGEALAKELGIP 157 (213)
T ss_dssp SCHHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHcCCE
Confidence 1223455666666643
No 136
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.29 E-value=0.27 Score=44.14 Aligned_cols=86 Identities=12% Similarity=0.156 Sum_probs=48.1
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 360 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 360 (532)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...++.+... +.+ +-+|.|+++..... .
T Consensus 69 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~----~ 143 (191)
T 2a5j_A 69 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMV-IMLIGNKSDLESRR----D 143 (191)
T ss_dssp EEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGC----C
T ss_pred EEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccCCcc----c
Confidence 4578999998732211111222446788888888754 4556666666555542 344 56888997753211 1
Q ss_pred cCCchHHHHHHHhCC
Q 009574 361 FGRGSGSQVVQQFGI 375 (532)
Q Consensus 361 ~~~~~~~~l~~~~g~ 375 (532)
...+..+++.+.++.
T Consensus 144 v~~~~~~~~~~~~~~ 158 (191)
T 2a5j_A 144 VKREEGEAFAREHGL 158 (191)
T ss_dssp SCHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHcCC
Confidence 122334555555554
No 137
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.26 E-value=0.11 Score=47.44 Aligned_cols=67 Identities=12% Similarity=0.103 Sum_probs=40.6
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHH-HHHHHHHHcC--CCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL--KVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~-~~~i~~l~~~--~~~~~gvV~N~~~~~ 352 (532)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+ ...++.+... +.+ +-+|.|+++..
T Consensus 72 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 142 (201)
T 2gco_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLR 142 (201)
T ss_dssp EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGT
T ss_pred EEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEecHHhh
Confidence 4678999998743222222222446788888877654 456555 4455555543 555 45888998754
No 138
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.24 E-value=0.019 Score=53.22 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=30.9
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
.+++++ +.+|+||||++.++|. ..|.+|+++|.+.+
T Consensus 21 ~~~~i~-G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~ 56 (220)
T 2cvh_A 21 VLTQVY-GPYASGKTTLALQTGL---LSGKKVAYVDTEGG 56 (220)
T ss_dssp SEEEEE-CSTTSSHHHHHHHHHH---HHCSEEEEEESSCC
T ss_pred EEEEEE-CCCCCCHHHHHHHHHH---HcCCcEEEEECCCC
Confidence 466666 9999999999999998 56889999998863
No 139
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.24 E-value=0.0093 Score=58.65 Aligned_cols=41 Identities=22% Similarity=0.367 Sum_probs=33.2
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
..+|+++ |-.|+||||+|..|+..|...|.++.+||+|-..
T Consensus 5 ~~iIgIt-G~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 5 HPIISVT-GSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp SCEEEEE-SCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 4578888 7899999999999999998888899999999765
No 140
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.18 E-value=0.22 Score=44.17 Aligned_cols=86 Identities=14% Similarity=0.189 Sum_probs=47.8
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCcccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYY 359 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~~~~~~~~~ 359 (532)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++...+.
T Consensus 51 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~---- 125 (189)
T 4dsu_A 51 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVP-MVLVGNKCDLPSRT---- 125 (189)
T ss_dssp EEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTSSSCS----
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccCcccc----
Confidence 3557789998743222222222335688888877654 455566555555543 2455 56888997754321
Q ss_pred ccCCchHHHHHHHhCCC
Q 009574 360 PFGRGSGSQVVQQFGIP 376 (532)
Q Consensus 360 ~~~~~~~~~l~~~~g~~ 376 (532)
...+..+.+.+.++.+
T Consensus 126 -~~~~~~~~~~~~~~~~ 141 (189)
T 4dsu_A 126 -VDTKQAQDLARSYGIP 141 (189)
T ss_dssp -SCHHHHHHHHHHHTCC
T ss_pred -cCHHHHHHHHHHcCCe
Confidence 1224566677777654
No 141
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.16 E-value=0.015 Score=55.79 Aligned_cols=42 Identities=24% Similarity=0.265 Sum_probs=34.0
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHH-----CCCcEEEEEcCCCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG-----MGARVGIFDADVYG 219 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~-----~G~rVllID~D~~~ 219 (532)
.+.+|+|+ |-.|+||||+|..||..|.. .|++|+++|+|-..
T Consensus 21 ~~~iI~I~-G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 21 EPFLIGVS-GGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CcEEEEEE-CCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 45678887 88999999999999987763 36789999999644
No 142
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=95.16 E-value=0.28 Score=51.63 Aligned_cols=124 Identities=6% Similarity=-0.020 Sum_probs=65.0
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 358 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~~~~~~~~ 358 (532)
+.+.+.|+|||+...........+..+|.+++|+..+. .++..+...+..+.. .+.+ +-+|.|+.+....
T Consensus 364 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~---- 438 (497)
T 3lvq_E 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDA---- 438 (497)
T ss_dssp SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCE-EEEEEECCSSSSC----
T ss_pred CCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCc-EEEEEECCCCCcC----
Confidence 46789999998743322222333556799999887654 456666655555533 2444 5688899764321
Q ss_pred cccCCchHHHHHHHhCCCcEEeccCchhhhhcccCCCceEEeCCCCHHHHHHHHHHHHHHHHHHHhhhccccc
Q 009574 359 YPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANTFQDLGVCVVQQCAKIRQQVSTA 431 (532)
Q Consensus 359 ~~~~~~~~~~l~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~s~~a~~~~~La~~i~~~~~~~~~~vs~~ 431 (532)
...+++.+.++..... ..+.+++.... .....+.++.+.|.+.+.+.....+++
T Consensus 439 -----~~~~~~~~~~~~~~~~------------~~~~~~~~~SA--~~g~gi~~l~~~l~~~~~~~~~~~~~~ 492 (497)
T 3lvq_E 439 -----MKPHEIQEKLGLTRIR------------DRNWYVQPSCA--TSGDGLYEGLTWLTSNYKSKLAAALEH 492 (497)
T ss_dssp -----CCHHHHHHHTTCTTCC------------SSCEEEEECBT--TTTBTHHHHHHHHHHHCC---------
T ss_pred -----CCHHHHHHHhchhhhh------------cCCeEEEEEEC--CCCCCHHHHHHHHHHHHHhcCCCCCcc
Confidence 2345666666643221 12223333321 122346677777777766665555543
No 143
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.14 E-value=0.17 Score=46.33 Aligned_cols=68 Identities=10% Similarity=0.023 Sum_probs=41.1
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~~--~~~~gvV~N~~~~~ 352 (532)
.+.+.|+|||+...........+..+|.+++|...+. .++..+...++.+.... ...+-+|.|+++..
T Consensus 74 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 74 KVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144 (201)
T ss_dssp EEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 4568999998743322222233456788998887654 45555555555554421 22356888998754
No 144
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.13 E-value=0.15 Score=46.23 Aligned_cols=86 Identities=12% Similarity=0.164 Sum_probs=50.8
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 360 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 360 (532)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++..... .
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~----~ 130 (203)
T 1zbd_A 56 RIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ-VLLVGNKCDMEDER----V 130 (203)
T ss_dssp EEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCE-EEEEEECTTCTTSC----C
T ss_pred EEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccCccc----c
Confidence 4678999998743322222233445788888888754 4556666666665542 344 56889997754321 1
Q ss_pred cCCchHHHHHHHhCC
Q 009574 361 FGRGSGSQVVQQFGI 375 (532)
Q Consensus 361 ~~~~~~~~l~~~~g~ 375 (532)
...+..+++.+.++.
T Consensus 131 ~~~~~~~~~~~~~~~ 145 (203)
T 1zbd_A 131 VSSERGRQLADHLGF 145 (203)
T ss_dssp SCHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHCCC
Confidence 122345666666664
No 145
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.13 E-value=0.015 Score=52.46 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=32.8
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
||++++|++ ..|+||||++..|+..+...|+++..|-.|..
T Consensus 1 m~~~v~IvG-~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 1 MSLILSIVG-TSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41 (171)
T ss_dssp --CEEEEEE-SCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred CceEEEEEC-CCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence 577999995 88999999999999999999988888877754
No 146
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.11 E-value=0.021 Score=56.81 Aligned_cols=38 Identities=18% Similarity=0.358 Sum_probs=33.8
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
.++.++ +..|+||||++.++|..++..|.+|+.+++..
T Consensus 69 ~l~li~-G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~ 106 (315)
T 3bh0_A 69 NFVLIA-ARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 106 (315)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred cEEEEE-eCCCCCHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 455555 99999999999999999999999999999884
No 147
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.10 E-value=0.39 Score=42.67 Aligned_cols=68 Identities=6% Similarity=-0.022 Sum_probs=41.6
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~----~~~~~gvV~N~~~~~ 352 (532)
+.+.+.|+|||+..............+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++..
T Consensus 60 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 132 (186)
T 1ksh_A 60 RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT-LLIFANKQDLP 132 (186)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTST
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCc-EEEEEeCccCC
Confidence 35678999998742221222222446788888887654 4577766666555432 344 67888997653
No 148
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.07 E-value=0.022 Score=53.03 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=34.3
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+.+++++ |..|+||||++..+|..++..|.+|++++.+.
T Consensus 23 G~~~~i~-G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 23 GFFIALT-GEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp TCEEEEE-CSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 3577777 88999999999999999888888999999876
No 149
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.05 E-value=0.3 Score=43.51 Aligned_cols=68 Identities=10% Similarity=0.017 Sum_probs=41.2
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~~ 352 (532)
+.+.+.++|+|+...........+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 58 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~ 130 (181)
T 1fzq_A 58 QGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP-VLIFANKQDLL 130 (181)
T ss_dssp TTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCC-EEEEEECTTST
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcCcc
Confidence 45678899998643222222222456789998887654 466666655554422 2445 56888997653
No 150
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.02 E-value=0.14 Score=44.52 Aligned_cols=68 Identities=19% Similarity=0.163 Sum_probs=41.8
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccC
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDA 353 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~---~~~~~gvV~N~~~~~~ 353 (532)
.+.+.|+|+|+...........+..+|.+++|...+. .+...+...+..+... +. .+-+|.|+++...
T Consensus 51 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~ 122 (170)
T 1ek0_A 51 TVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDI-IIALVGNKIDXLQ 122 (170)
T ss_dssp EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC-EEEEEEECGGGGG
T ss_pred EEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCC-cEEEEEECCCccc
Confidence 4568999998743322222223456789988887654 3566666655555432 33 3568889987543
No 151
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.02 E-value=0.24 Score=44.76 Aligned_cols=67 Identities=13% Similarity=0.084 Sum_probs=40.5
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~~ 352 (532)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 132 (206)
T 2bov_A 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLE 132 (206)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTCG
T ss_pred EEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccCcc
Confidence 4578999998754332222222345688888877654 455555555554443 2455 45888997753
No 152
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.99 E-value=0.12 Score=45.17 Aligned_cols=68 Identities=12% Similarity=0.123 Sum_probs=41.2
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC-----CCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-----KVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~-----~~~~~gvV~N~~~~~ 352 (532)
..+.+.|+|||+...........+..+|.+++|...+. .+...+...++.+.+. +.+ +-+|.|+++..
T Consensus 49 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~ 122 (172)
T 2erx_A 49 SICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP-IMLVGNKCDES 122 (172)
T ss_dssp EEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC-EEEEEECGGGG
T ss_pred EEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCC-EEEEEEccccc
Confidence 34678999998754332222222445788888887654 3455555555444432 455 56889998754
No 153
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.98 E-value=0.18 Score=44.38 Aligned_cols=67 Identities=12% Similarity=0.087 Sum_probs=39.1
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHH-H---cCCCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF-S---KLKVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l-~---~~~~~~~gvV~N~~~~~ 352 (532)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+ + ..+.+ +-+|.|+++..
T Consensus 56 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 127 (181)
T 2fn4_A 56 PARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFP-VVLVGNKADLE 127 (181)
T ss_dssp EEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCC-EEEEEECGGGG
T ss_pred EEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccc
Confidence 4568899998743221111122335688888877655 3555555544444 2 23455 56888998754
No 154
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.97 E-value=0.33 Score=43.81 Aligned_cols=81 Identities=11% Similarity=0.056 Sum_probs=46.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRY 358 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~----~~~~~gvV~N~~~~~~~~~~~ 358 (532)
+.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++....
T Consensus 71 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~---- 145 (192)
T 2b6h_A 71 KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV-LLVFANKQDMPNA---- 145 (192)
T ss_dssp TTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC----
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCe-EEEEEECCCCCCC----
Confidence 45678999998743221222222446789988887654 4566666666555432 344 6688899775321
Q ss_pred cccCCchHHHHHHHhC
Q 009574 359 YPFGRGSGSQVVQQFG 374 (532)
Q Consensus 359 ~~~~~~~~~~l~~~~g 374 (532)
...+++.+.++
T Consensus 146 -----~~~~~i~~~~~ 156 (192)
T 2b6h_A 146 -----MPVSELTDKLG 156 (192)
T ss_dssp -----CCHHHHHHHTT
T ss_pred -----CCHHHHHHHhC
Confidence 12456666665
No 155
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=94.95 E-value=0.12 Score=53.69 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=49.4
Q ss_pred cCCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHH-------HHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 283 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI-------DVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 283 ~~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~-------~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
+..+.+.|+|||+-..........+..+|.+++|+.....++. .+.+.+..+...+++.+-+++|+++..
T Consensus 81 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 157 (435)
T 1jny_A 81 TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLT 157 (435)
T ss_dssp CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGS
T ss_pred cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCC
Confidence 4678899999987544433333445678999999998876554 455666666777876567889998754
No 156
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.94 E-value=0.03 Score=50.33 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=34.6
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
+++|+++ |-.|+||||++..|+..|...|..+..+|.|.-.
T Consensus 5 g~~i~l~-G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 5 GCTVWLT-GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 45 (179)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHH
Confidence 4577777 8899999999999999998889999888877543
No 157
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.93 E-value=0.2 Score=44.59 Aligned_cols=68 Identities=7% Similarity=-0.018 Sum_probs=42.3
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~~ 352 (532)
+.+.+.|+|+|+...........+..+|.+++|...+.. ++..+...+..+.. .+. .+-+|.|+++..
T Consensus 63 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~-piilv~NK~Dl~ 135 (181)
T 2h17_A 63 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKA-GLLIFANKQDVK 135 (181)
T ss_dssp TTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTC-EEEEEEECTTST
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCC-eEEEEEECCCcc
Confidence 346789999987432222222224567899998886543 67776666655543 234 467888997653
No 158
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=94.93 E-value=0.072 Score=58.57 Aligned_cols=83 Identities=11% Similarity=0.073 Sum_probs=55.6
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCC
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 363 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 363 (532)
..+.+.|+|||+...........+..+|.+++|+.+...........++.+...+.+++ +++|+++.. .. ..
T Consensus 72 ~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~i-lv~NKiD~~-~~------~~ 143 (665)
T 2dy1_A 72 RGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRM-VVVTKLDKG-GD------YY 143 (665)
T ss_dssp TTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECGGGC-CC------HH
T ss_pred CCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEE-EEecCCchh-hh------HH
Confidence 46778999998643322222333456799999988766544556677777777788866 678997754 21 12
Q ss_pred chHHHHHHHhC
Q 009574 364 GSGSQVVQQFG 374 (532)
Q Consensus 364 ~~~~~l~~~~g 374 (532)
+..+++.+.++
T Consensus 144 ~~~~~l~~~l~ 154 (665)
T 2dy1_A 144 ALLEDLRSTLG 154 (665)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 45677888777
No 159
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.91 E-value=0.12 Score=46.25 Aligned_cols=42 Identities=12% Similarity=0.056 Sum_probs=26.8
Q ss_pred CCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 310 LTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 310 ~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
++.+++|+..............+.+...+.+ +-+|.|+++..
T Consensus 105 ~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~ 146 (195)
T 3pqc_A 105 LQMVFLLVDGRIPPQDSDLMMVEWMKSLNIP-FTIVLTKMDKV 146 (195)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECGGGS
T ss_pred ceEEEEEecCCCCCCHHHHHHHHHHHHcCCC-EEEEEEChhcC
Confidence 3677777776544333334556677777777 45778997753
No 160
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.90 E-value=0.024 Score=52.89 Aligned_cols=39 Identities=18% Similarity=0.155 Sum_probs=33.1
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
..+|+|+ |.+||||||+..+|+..+... +++..|+.|++
T Consensus 38 ~~~i~iv-G~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~ 76 (226)
T 2hf9_A 38 VVAFDFM-GAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVI 76 (226)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETT
T ss_pred CeEEEEE-cCCCCCHHHHHHHHHHHhccC-CeEEEEECCCC
Confidence 4577777 779999999999999887665 78999999985
No 161
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.87 E-value=0.033 Score=55.17 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=31.6
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHC--CCcEEEEEcCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDADV 217 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~--G~rVllID~D~ 217 (532)
++.+. +-.|+||||++.+++..+++. |.+|+.||+.-
T Consensus 30 iteI~-G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 30 LLILA-GPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp EEEEE-ESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 44444 789999999999999999886 88999999865
No 162
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.87 E-value=0.12 Score=45.54 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=48.7
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC-CCEEEEEEecccccCCCccccccC
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK-VPCIAVVENMCHFDADGKRYYPFG 362 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~~-~~~~gvV~N~~~~~~~~~~~~~~~ 362 (532)
.+.+.|+|+|+...........+..+|.+++|...+. .+...+...+..+.... ...+-+|.|+++..... ...
T Consensus 57 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~----~~~ 132 (181)
T 3tw8_B 57 KVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERK----VVE 132 (181)
T ss_dssp EEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGC----CSC
T ss_pred EEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhc----ccC
Confidence 3678999998732211112222446788888887654 45556666666555422 22356888997743311 112
Q ss_pred CchHHHHHHHhCCC
Q 009574 363 RGSGSQVVQQFGIP 376 (532)
Q Consensus 363 ~~~~~~l~~~~g~~ 376 (532)
......+.+.++.+
T Consensus 133 ~~~~~~~~~~~~~~ 146 (181)
T 3tw8_B 133 TEDAYKFAGQMGIQ 146 (181)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCe
Confidence 23455566666643
No 163
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.87 E-value=0.35 Score=43.17 Aligned_cols=68 Identities=13% Similarity=0.084 Sum_probs=40.5
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~----~~~~~gvV~N~~~~~ 352 (532)
+.+.+.|+|||+...........+..+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++..
T Consensus 64 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 136 (189)
T 2x77_A 64 KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSL-LLIFANKQDLP 136 (189)
T ss_dssp TTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCE-EEEEEECTTST
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCe-EEEEEECCCCc
Confidence 35678999998743221111122346788888887654 3566666555544332 344 67889997653
No 164
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.86 E-value=0.031 Score=51.29 Aligned_cols=42 Identities=31% Similarity=0.313 Sum_probs=35.4
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
..+.+|+++ |-.|+||||++..||..|...|..+..+|.|.-
T Consensus 23 ~~g~~i~l~-G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVT-GLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 345688888 999999999999999999888887788897753
No 165
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.86 E-value=0.19 Score=45.25 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=41.7
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~---~~~~~gvV~N~~~~~ 352 (532)
.+.+.|+|+|+...........+..+|.+++|...+. .+...+...++.+... +.+ +-+|.|+++..
T Consensus 74 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilV~NK~Dl~ 144 (192)
T 2il1_A 74 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCE 144 (192)
T ss_dssp EEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccc
Confidence 4678999998743322222222445789998888654 4566665555555543 333 66889998754
No 166
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.83 E-value=0.13 Score=47.01 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=41.0
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHH-HHHHHHHHcC--CCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL--KVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~-~~~i~~l~~~--~~~~~gvV~N~~~~~ 352 (532)
.+.+.|+|||+...........+..+|.+++|...+. .++..+ ...+..+... +.+ +-+|.|+++..
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 142 (207)
T 2fv8_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVP-IILVANKKDLR 142 (207)
T ss_dssp EEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGG
T ss_pred EEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhhh
Confidence 4678999998743222222222446788888877654 455555 4455555543 555 45888997753
No 167
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=94.83 E-value=0.015 Score=47.49 Aligned_cols=34 Identities=26% Similarity=0.634 Sum_probs=28.5
Q ss_pred ceeeEEEEe-cCeeEEEEcCCCCcccCChHHHHhc
Q 009574 487 IEPEEIRPM-GNYAVSITWPDGFSQIAPYDQLQTM 520 (532)
Q Consensus 487 i~~~~~~~~-g~yal~i~w~dgh~~~y~~~~L~~~ 520 (532)
..|++|+.. ++..|.|.|+|||.+.|++.|||.-
T Consensus 7 ~~P~~i~l~~~~~~L~v~w~DG~~~~~~~~wLRd~ 41 (101)
T 3luu_A 7 TQPLEIRPLMISRVMEVDWADGHTSRLTFEHLRVE 41 (101)
T ss_dssp GCEEEEEEETTTTEEEEEETTSCEEEEEHHHHHHT
T ss_pred CCCeEEEEeCCCCEEEEEeCCCCEEEECHHHHHhh
Confidence 357777765 3468999999999999999999987
No 168
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.82 E-value=0.24 Score=43.91 Aligned_cols=87 Identities=15% Similarity=0.125 Sum_probs=47.8
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHH----cCCCCEEEEEEecccccCCCcccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFS----KLKVPCIAVVENMCHFDADGKRYY 359 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~i~~l~----~~~~~~~gvV~N~~~~~~~~~~~~ 359 (532)
.+.+.|+|+|+...........+..+|.+++|...+.. ++..+...+..+. ..+.+ +-+|.|+++.....
T Consensus 65 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~---- 139 (183)
T 3kkq_A 65 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP-MILVANKVDLMHLR---- 139 (183)
T ss_dssp EEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCC-EEEEEECTTCSTTC----
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCCchhcc----
Confidence 34466799987422111111223357888888776543 5555555544443 24555 45888997753311
Q ss_pred ccCCchHHHHHHHhCCC
Q 009574 360 PFGRGSGSQVVQQFGIP 376 (532)
Q Consensus 360 ~~~~~~~~~l~~~~g~~ 376 (532)
....+..+++.+.++.+
T Consensus 140 ~v~~~~~~~~~~~~~~~ 156 (183)
T 3kkq_A 140 KVTRDQGKEMATKYNIP 156 (183)
T ss_dssp CSCHHHHHHHHHHHTCC
T ss_pred CcCHHHHHHHHHHhCCe
Confidence 12234456677777754
No 169
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=94.81 E-value=0.24 Score=52.09 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=46.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchH-------HHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~-------~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
..+.+.|+|||+-..........+..+|.+++|+..+.... ......+..+...+.+.+-+++|+++..
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~ 184 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 184 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGG
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcc
Confidence 56789999998743333333344567899999998766421 3455666667777776577899998754
No 170
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.77 E-value=0.029 Score=56.33 Aligned_cols=38 Identities=16% Similarity=0.424 Sum_probs=33.8
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
.++.++ +..|+||||++.++|..++..|.+|+++.+..
T Consensus 47 ~LiiIa-G~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm 84 (338)
T 4a1f_A 47 SLVIIG-ARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM 84 (338)
T ss_dssp CEEEEE-ECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred cEEEEE-eCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 355555 99999999999999999999999999999875
No 171
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.71 E-value=0.025 Score=59.10 Aligned_cols=39 Identities=18% Similarity=0.315 Sum_probs=34.2
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
.++.|+ +..|+||||++.++|..++..|.+|+++.+...
T Consensus 198 ~liiIa-G~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms 236 (444)
T 3bgw_A 198 NFVLIA-ARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG 236 (444)
T ss_dssp CEEEEE-ECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred cEEEEE-eCCCCChHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 355555 999999999999999999999999999998864
No 172
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.66 E-value=0.32 Score=43.16 Aligned_cols=67 Identities=10% Similarity=0.003 Sum_probs=40.7
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~---~~~~~~gvV~N~~~~~ 352 (532)
.+.+.|+|+|+...........+..+|.+++|...+. .+...+...+..+.. .+.+ +-+|.|+++..
T Consensus 58 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 128 (186)
T 2bme_A 58 YVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIV-IILCGNKKDLD 128 (186)
T ss_dssp EEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccc
Confidence 3578999998743322222233446788888887654 355555555544443 2343 67888998753
No 173
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.66 E-value=0.15 Score=45.66 Aligned_cols=68 Identities=10% Similarity=-0.001 Sum_probs=42.3
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC---CCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK---VPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~~---~~~~gvV~N~~~~ 351 (532)
..+.+.|+|||+...........+..+|.+++|..... .+...+...++.+.... ...+-+|.|+++.
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl 133 (195)
T 1x3s_A 62 NKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK 133 (195)
T ss_dssp EEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS
T ss_pred eEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcC
Confidence 35678999998743222222222456788988887654 45566666666665532 2245688899875
No 174
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.65 E-value=0.047 Score=57.16 Aligned_cols=67 Identities=10% Similarity=-0.010 Sum_probs=38.4
Q ss_pred CCCCEEEEcCCCCCC-----h---hhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTG-----D---IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~-----~---~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
....+.|+|||+-.. . .......+..+|.+++|+.....-...-..+.+.+++.+.++ -+|+|+++.
T Consensus 69 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pv-ilV~NK~D~ 143 (456)
T 4dcu_A 69 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPV-VLAVNKLDN 143 (456)
T ss_dssp CSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCE-EEEEECC--
T ss_pred CCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCE-EEEEECccc
Confidence 566789999976211 0 011112234578888888765432233345667777777774 477899764
No 175
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=94.62 E-value=0.13 Score=55.54 Aligned_cols=85 Identities=11% Similarity=0.039 Sum_probs=51.6
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCC
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 363 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 363 (532)
..|.+.|+|||+-..........+..+|.+++|+.............+..+...+++ +-+++|+++..... ..
T Consensus 71 ~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ip-iIvviNKiDl~~a~------~~ 143 (600)
T 2ywe_A 71 NTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLV-IIPVINKIDLPSAD------VD 143 (600)
T ss_dssp CEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCE-EEEEEECTTSTTCC------HH
T ss_pred CeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCC-EEEEEeccCccccC------HH
Confidence 347788999987544332223335678999999887654333444445555566777 56788997753311 01
Q ss_pred chHHHHHHHhCC
Q 009574 364 GSGSQVVQQFGI 375 (532)
Q Consensus 364 ~~~~~l~~~~g~ 375 (532)
...+++.+.++.
T Consensus 144 ~v~~el~~~lg~ 155 (600)
T 2ywe_A 144 RVKKQIEEVLGL 155 (600)
T ss_dssp HHHHHHHHTSCC
T ss_pred HHHHHHHHhhCC
Confidence 235566666664
No 176
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.59 E-value=0.71 Score=41.21 Aligned_cols=69 Identities=12% Similarity=0.054 Sum_probs=41.9
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~~--~~~~gvV~N~~~~~ 352 (532)
..+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.... ...+-+|.|+++..
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 72 AAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143 (193)
T ss_dssp EEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc
Confidence 34568999998743322222222456788888887654 35555666666665432 22367888998754
No 177
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=94.58 E-value=0.34 Score=53.57 Aligned_cols=88 Identities=19% Similarity=0.047 Sum_probs=63.1
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCC
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 363 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 363 (532)
++|-+=|||||+-.....-...++..+|++++|+....--...+..+++.+.+.+++.+ +++|+.+..... -.
T Consensus 83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i-~~iNKiDr~~a~------~~ 155 (709)
T 4fn5_A 83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRI-VYVNKMDRQGAN------FL 155 (709)
T ss_dssp CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEE-EEEECSSSTTCC------HH
T ss_pred CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeE-EEEccccccCcc------HH
Confidence 45667899999866554444445677899999999887777788899999998899954 667996532211 12
Q ss_pred chHHHHHHHhCCCcE
Q 009574 364 GSGSQVVQQFGIPHL 378 (532)
Q Consensus 364 ~~~~~l~~~~g~~~l 378 (532)
...+++.+.++...+
T Consensus 156 ~~~~ei~~~l~~~~~ 170 (709)
T 4fn5_A 156 RVVEQIKKRLGHTPV 170 (709)
T ss_dssp HHHHHHHHHHCSCEE
T ss_pred HHHHHhhhhccccee
Confidence 467888888885443
No 178
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.55 E-value=0.34 Score=43.62 Aligned_cols=82 Identities=12% Similarity=0.170 Sum_probs=48.3
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 358 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~~~~~~~~ 358 (532)
+.+.+.++|+|+...........+..+|.+++|...+.. ++..+...+..+.. .+.+ +-+|.|+++....
T Consensus 65 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~---- 139 (190)
T 1m2o_B 65 GNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVP-FVILGNKIDAPNA---- 139 (190)
T ss_dssp TTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTC----
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCC-EEEEEECCCCcCC----
Confidence 346789999987432222211223467888888887544 66766666655543 3455 5688899765321
Q ss_pred cccCCchHHHHHHHhCC
Q 009574 359 YPFGRGSGSQVVQQFGI 375 (532)
Q Consensus 359 ~~~~~~~~~~l~~~~g~ 375 (532)
...+++.+.++.
T Consensus 140 -----~~~~~~~~~~~~ 151 (190)
T 1m2o_B 140 -----VSEAELRSALGL 151 (190)
T ss_dssp -----CCHHHHHHHTTC
T ss_pred -----CCHHHHHHHhCC
Confidence 124556666553
No 179
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.48 E-value=0.031 Score=51.78 Aligned_cols=40 Identities=25% Similarity=0.197 Sum_probs=34.3
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHH-HCCCcEEEEEcCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADV 217 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA-~~G~rVllID~D~ 217 (532)
++++|.+. |-.|+||||++..|+..|. ..|.++..+|.|.
T Consensus 24 ~~~~i~~~-G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 24 RGLTIWLT-GLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp SCEEEEEE-CSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 35677777 8899999999999999998 7798999998765
No 180
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=94.48 E-value=0.15 Score=53.01 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=47.1
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchH-------HHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~-------~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
+.+.+.|+|||+-..........+..+|.+++|+.....-. ......+..+...+++.+-+++|+++.
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDD 167 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCC
Confidence 56789999998743333333333456899999998876433 355666677777888866788899775
No 181
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.45 E-value=0.32 Score=43.84 Aligned_cols=68 Identities=13% Similarity=0.070 Sum_probs=41.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccccC
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDA 353 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~~~ 353 (532)
..+.+.|+|+|+... .......+..+|.+++|...+. .++..+...++.+.. .+.+ +-+|.|+++...
T Consensus 74 ~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~ 146 (196)
T 2atv_A 74 EVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVT-LILVGNKADLDH 146 (196)
T ss_dssp EEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCC-EEEEEECGGGGG
T ss_pred EEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCc-EEEEEECccccc
Confidence 346788999987543 2222222345788888888764 455555555544433 3455 568889987543
No 182
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.43 E-value=0.042 Score=50.29 Aligned_cols=37 Identities=22% Similarity=0.120 Sum_probs=31.8
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
+.+.++ |..|+||||++..++..+.+.|.+|+.+++.
T Consensus 55 ~~~~l~-G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLH-GSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 355666 8999999999999999999989999988764
No 183
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.39 E-value=0.029 Score=50.45 Aligned_cols=36 Identities=28% Similarity=0.309 Sum_probs=30.2
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHH-HCCCcEEEEEc
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDA 215 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA-~~G~rVllID~ 215 (532)
+.+.++ |..|+||||++..++..+. ..|.+|+.+++
T Consensus 39 ~~~~l~-G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 39 KGLTFV-GSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp CEEEEC-CSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 467776 8999999999999999997 77888877654
No 184
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.39 E-value=0.44 Score=42.08 Aligned_cols=69 Identities=16% Similarity=0.108 Sum_probs=39.0
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~i~~l~~~---~~~~~gvV~N~~~~~ 352 (532)
+.+.+.|+|+|+...........+..+|.+++|...+ ..++..+...+..+... ....+-+|.|+++..
T Consensus 60 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 132 (183)
T 1moz_A 60 KNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQP 132 (183)
T ss_dssp TTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTST
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCC
Confidence 3467889999874322122222234568888888764 34666666666555432 222467888997643
No 185
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.36 E-value=0.51 Score=44.23 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=17.2
Q ss_pred eEEEEEeCcCCCcHHHHHHHHH
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLA 200 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA 200 (532)
..|+++ |..|+||||+.-.|.
T Consensus 30 ~~i~lv-G~~g~GKStlin~l~ 50 (239)
T 3lxx_A 30 LRIVLV-GKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHc
Confidence 467777 899999999987664
No 186
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.35 E-value=0.16 Score=50.00 Aligned_cols=67 Identities=13% Similarity=0.119 Sum_probs=37.4
Q ss_pred CCCCEEEEcCCCCCChhh---------hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQ---------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~---------~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
+.+.++++|||+-..... .....+..+|.+++|+.....+- ....+++.+...+.+++ +++|+++..
T Consensus 54 ~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~~-~~~~i~~~l~~~~~P~i-lvlNK~D~~ 129 (301)
T 1ega_A 54 GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTP-DDEMVLNKLREGKAPVI-LAVNKVDNV 129 (301)
T ss_dssp TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCH-HHHHHHHHHHSSSSCEE-EEEESTTTC
T ss_pred CCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCCH-HHHHHHHHHHhcCCCEE-EEEECcccC
Confidence 456788999975330110 01112334677777777654332 23455666776677754 666997643
No 187
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.33 E-value=0.44 Score=42.53 Aligned_cols=87 Identities=11% Similarity=0.135 Sum_probs=47.9
Q ss_pred CCCEEEEcCCCCCChh-hhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCccc
Q 009574 285 ELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 358 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~-~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~~~~~~~~ 358 (532)
.+.+.|+|+|+..... ......+..+|.+++|...+. .++..+...++.+.. .+.+ +-+|.|+++.....
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~--- 143 (189)
T 1z06_A 68 RIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP-RILVGNKCDLRSAI--- 143 (189)
T ss_dssp EEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCC-EEEEEECTTCGGGC---
T ss_pred EEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccc---
Confidence 4678999998732211 111222446788998888654 455555555444432 2455 56888997753311
Q ss_pred cccCCchHHHHHHHhCCC
Q 009574 359 YPFGRGSGSQVVQQFGIP 376 (532)
Q Consensus 359 ~~~~~~~~~~l~~~~g~~ 376 (532)
....+..+.+.+.++.+
T Consensus 144 -~v~~~~~~~~~~~~~~~ 160 (189)
T 1z06_A 144 -QVPTDLAQKFADTHSMP 160 (189)
T ss_dssp -CSCHHHHHHHHHHTTCC
T ss_pred -eeCHHHHHHHHHHcCCE
Confidence 11223455566666643
No 188
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.33 E-value=0.23 Score=44.97 Aligned_cols=67 Identities=13% Similarity=0.134 Sum_probs=41.5
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~---~~~~~gvV~N~~~~~ 352 (532)
.+.+.|+|||+...........+..+|.+++|...+. .+...+...++.+... +.+ +-+|.|+++..
T Consensus 76 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~ 146 (199)
T 2p5s_A 76 RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVP-IMLVGNKADIR 146 (199)
T ss_dssp EEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CC-EEEEEECGGGH
T ss_pred EEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccc
Confidence 4568999998754332222222445789999887653 4556666655555542 455 56888998753
No 189
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.28 E-value=0.3 Score=47.17 Aligned_cols=89 Identities=12% Similarity=0.050 Sum_probs=53.2
Q ss_pred CCCCEEEEcCCCCCChhh------------hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQ------------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~------------~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
..+.+.|+|||+...... ........+|.+++|+..+. ..........+.+.+.+ +-+|+||++.
T Consensus 48 ~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p-~ivv~NK~Dl 124 (274)
T 3i8s_A 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIP-CIVALNMLDI 124 (274)
T ss_dssp SSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCC-EEEEEECHHH
T ss_pred CCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCC-EEEEEECccc
Confidence 456789999987432110 01111236789999988765 33444555666666777 4578899875
Q ss_pred cCCCccccccCCchHHHHHHHhCCCcEEe
Q 009574 352 DADGKRYYPFGRGSGSQVVQQFGIPHLFD 380 (532)
Q Consensus 352 ~~~~~~~~~~~~~~~~~l~~~~g~~~l~~ 380 (532)
...... ....+.+.+.+|.+++..
T Consensus 125 ~~~~~~-----~~~~~~l~~~lg~~~i~~ 148 (274)
T 3i8s_A 125 AEKQNI-----RIEIDALSARLGCPVIPL 148 (274)
T ss_dssp HHHTTE-----EECHHHHHHHHTSCEEEC
T ss_pred hhhhhH-----HHHHHHHHHhcCCCEEEE
Confidence 331110 123677888888766544
No 190
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.26 E-value=0.28 Score=44.51 Aligned_cols=67 Identities=10% Similarity=0.022 Sum_probs=39.3
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~---~~~~~~gvV~N~~~~~ 352 (532)
.+.+.|+|||+...........+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 73 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 143 (200)
T 2o52_A 73 TVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIV-VILCGNKKDLD 143 (200)
T ss_dssp EEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCE-EEEEEECGGGG
T ss_pred eeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCcc
Confidence 3678999998631111111122446788888887654 455555555555543 2344 66888998753
No 191
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.25 E-value=0.026 Score=51.78 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=29.7
Q ss_pred ccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 174 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 174 ~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
+.++|++|+++ |-.|+||||++..|+..+ | ..++|.|..
T Consensus 14 m~~~~~~I~l~-G~~GsGKSTla~~L~~~l---g--~~~i~~d~~ 52 (202)
T 3t61_A 14 VRRFPGSIVVM-GVSGSGKSSVGEAIAEAC---G--YPFIEGDAL 52 (202)
T ss_dssp -CCCSSCEEEE-CSTTSCHHHHHHHHHHHH---T--CCEEEGGGG
T ss_pred cCCCCeEEEEE-CCCCCCHHHHHHHHHHHh---C--CEEEeCCcC
Confidence 45567788877 889999999999998887 4 346777753
No 192
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=94.23 E-value=0.53 Score=46.77 Aligned_cols=82 Identities=9% Similarity=0.082 Sum_probs=45.9
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHH-cC---CCCEEEEEEecccccCCCccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFS-KL---KVPCIAVVENMCHFDADGKRY 358 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~i~~l~-~~---~~~~~gvV~N~~~~~~~~~~~ 358 (532)
..+.+.|+|||+...........+..+|.+++|...+ ..++..+...+..+. .. +.+ +-+|.|+++....
T Consensus 207 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~~---- 281 (329)
T 3o47_A 207 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQDLPNA---- 281 (329)
T ss_dssp TTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC----
T ss_pred CcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCe-EEEEEECccCCcc----
Confidence 4567899999874322222222244568888888765 445666655544443 22 344 5688899764321
Q ss_pred cccCCchHHHHHHHhCC
Q 009574 359 YPFGRGSGSQVVQQFGI 375 (532)
Q Consensus 359 ~~~~~~~~~~l~~~~g~ 375 (532)
...+++.+.++.
T Consensus 282 -----~~~~~i~~~~~~ 293 (329)
T 3o47_A 282 -----MNAAEITDKLGL 293 (329)
T ss_dssp -----CCHHHHHHHHTC
T ss_pred -----cCHHHHHHHhch
Confidence 235667777664
No 193
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.11 E-value=0.42 Score=44.18 Aligned_cols=67 Identities=12% Similarity=0.102 Sum_probs=40.4
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~---~~~~~gvV~N~~~~~ 352 (532)
.+.+.|+|+|+......+....+..+|.+++|...+. .++..+...+..+... +. .+-+|.|+++..
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~-piilv~nK~Dl~ 131 (223)
T 3cpj_B 61 RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNV-AVGLIGNKSDLA 131 (223)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--C-EEEEEECCGGGG
T ss_pred EEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCC-eEEEEEECcccc
Confidence 3678999998743322222222446788888887654 4566666666665543 33 356888998754
No 194
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.11 E-value=0.062 Score=48.51 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=28.6
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 214 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID 214 (532)
+|+++ |-.|+||||++..|+..|...|..|+-.|
T Consensus 2 ~I~l~-G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFE-GIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEE-CSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 56666 88999999999999999988898876544
No 195
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.08 E-value=0.033 Score=50.22 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=30.0
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
++|+|. |-.|+||||++..||..|...|.+.-.+|.|
T Consensus 4 ~~I~i~-G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 4 KVVVVT-GVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp CEEEEE-CCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 466666 8899999999999999998888655666754
No 196
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.06 E-value=0.075 Score=48.72 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=31.8
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 214 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID 214 (532)
++++.++ |--|+||||.+..+|..+..+|++|+++-
T Consensus 8 g~i~v~~-G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 8 GWVEVIV-GPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4566666 88899999999999999999999999995
No 197
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.05 E-value=0.059 Score=52.70 Aligned_cols=39 Identities=26% Similarity=0.407 Sum_probs=33.9
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHC-CCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~-G~rVllID~D~ 217 (532)
+.+++++ |..|+||||++.++|..++.. |.+|++++.+.
T Consensus 35 G~~~~i~-G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 35 GEVIMVT-SGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp TCEEEEE-ESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred CeEEEEE-eCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 3577777 899999999999999999876 88999998875
No 198
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.03 E-value=0.42 Score=42.83 Aligned_cols=86 Identities=12% Similarity=0.132 Sum_probs=47.5
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc------CCCCEEEEEEecccccCCCc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK------LKVPCIAVVENMCHFDADGK 356 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~i~~l~~------~~~~~~gvV~N~~~~~~~~~ 356 (532)
..+.+.|+|+|+......+. ..+..+|.+++|...+ ..++..+...+..+.. .+.+ +-+|.|+++.....
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~-~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~- 143 (187)
T 3c5c_A 67 QPVHLRVMDTADLDTPRNCE-RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP-ALLLGNKLDMAQYR- 143 (187)
T ss_dssp EEEEEEEEECCC---CCCTH-HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECGGGGGGC-
T ss_pred EEEEEEEEECCCCCcchhHH-HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCC-EEEEEECcchhhcC-
Confidence 34568889998742211111 1234578888887765 4466666666655543 3555 56888998753311
Q ss_pred cccccCCchHHHHHHHhCC
Q 009574 357 RYYPFGRGSGSQVVQQFGI 375 (532)
Q Consensus 357 ~~~~~~~~~~~~l~~~~g~ 375 (532)
....+..+++.+.++.
T Consensus 144 ---~v~~~~~~~~~~~~~~ 159 (187)
T 3c5c_A 144 ---QVTKAEGVALAGRFGC 159 (187)
T ss_dssp ---SSCHHHHHHHHHHHTC
T ss_pred ---ccCHHHHHHHHHHcCC
Confidence 1122344556666653
No 199
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.01 E-value=0.048 Score=58.46 Aligned_cols=40 Identities=35% Similarity=0.341 Sum_probs=35.3
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
.+.+|.++ |..|+||||+|..|+..|..+|+++.++|.|.
T Consensus 371 ~~~~I~l~-G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 371 QGFCVWLT-GLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred cceEEEcc-CCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 35667776 88999999999999999999999999999885
No 200
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.99 E-value=0.34 Score=43.97 Aligned_cols=68 Identities=9% Similarity=0.130 Sum_probs=40.5
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~~ 352 (532)
+.+.+.++|||+...........+..+|.+++|..... .++..+...+..+.+ .+.+ +-+|.|+++..
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~ 139 (198)
T 1f6b_A 67 AGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVP-ILILGNKIDRP 139 (198)
T ss_dssp TTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSC-EEEEEECTTST
T ss_pred CCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc-EEEEEECCCcc
Confidence 34678899998743221222122346788998887654 467766666665543 2455 56888997653
No 201
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.97 E-value=0.3 Score=42.86 Aligned_cols=67 Identities=18% Similarity=0.094 Sum_probs=40.2
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~---~~~~~~gvV~N~~~~~ 352 (532)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|+|+++..
T Consensus 62 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 132 (179)
T 2y8e_A 62 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLS 132 (179)
T ss_dssp EEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECGGGG
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCccc
Confidence 4568999998743222222222446788988887754 355555555554443 2344 56889998754
No 202
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.92 E-value=0.036 Score=49.54 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=26.0
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
++|. .+|-.|+||||++..||..| |.....+|.|.
T Consensus 4 ~~i~-l~G~~GsGKST~a~~La~~l---~~~~~~~~~D~ 38 (178)
T 1qhx_A 4 RMII-LNGGSSAGKSGIVRCLQSVL---PEPWLAFGVDS 38 (178)
T ss_dssp CEEE-EECCTTSSHHHHHHHHHHHS---SSCEEEEEHHH
T ss_pred eEEE-EECCCCCCHHHHHHHHHHhc---CCCeEEeccch
Confidence 4554 45999999999999988766 44566667763
No 203
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.92 E-value=0.3 Score=42.53 Aligned_cols=86 Identities=15% Similarity=0.137 Sum_probs=45.5
Q ss_pred CCCEEEEcCCCCCChhh-hhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCccc
Q 009574 285 ELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRY 358 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~-~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~----~~~~~gvV~N~~~~~~~~~~~ 358 (532)
.+.+.++|+|+...... ........+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++.....
T Consensus 50 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~--- 125 (169)
T 3q85_A 50 EVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLARSR--- 125 (169)
T ss_dssp EEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCGGGC---
T ss_pred EEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCC-EEEEeeCcchhhcc---
Confidence 46688999987432211 11111234688888877654 4555565555555432 455 45888997753211
Q ss_pred cccCCchHHHHHHHhCC
Q 009574 359 YPFGRGSGSQVVQQFGI 375 (532)
Q Consensus 359 ~~~~~~~~~~l~~~~g~ 375 (532)
....+..+.+.+.++.
T Consensus 126 -~~~~~~~~~~~~~~~~ 141 (169)
T 3q85_A 126 -EVSLEEGRHLAGTLSC 141 (169)
T ss_dssp -CSCHHHHHHHHHHTTC
T ss_pred -cCCHHHHHHHHHHcCC
Confidence 1222345556666664
No 204
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.91 E-value=0.22 Score=47.99 Aligned_cols=89 Identities=13% Similarity=0.060 Sum_probs=51.5
Q ss_pred CCCCEEEEcCCCCCChhh--------hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC-CCEEEEEEecccccCC
Q 009574 284 GELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK-VPCIAVVENMCHFDAD 354 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~--------~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~-~~~~gvV~N~~~~~~~ 354 (532)
..+.+.|+|||+...... ........+|.+++|+..... .........+...+ .+ +-+|+||++....
T Consensus 48 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~ 124 (271)
T 3k53_A 48 REKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKN-IILVLNKFDLLKK 124 (271)
T ss_dssp TTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCS-EEEEEECHHHHHH
T ss_pred CCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCC-EEEEEEChhcCcc
Confidence 456689999987432111 111111357899999887653 33334444455556 66 4588899874321
Q ss_pred CccccccCCchHHHHHHHhCCCcEEe
Q 009574 355 GKRYYPFGRGSGSQVVQQFGIPHLFD 380 (532)
Q Consensus 355 ~~~~~~~~~~~~~~l~~~~g~~~l~~ 380 (532)
.. .. ...+.+.+.+|.+++..
T Consensus 125 ~~----~~-~~~~~l~~~lg~~~~~~ 145 (271)
T 3k53_A 125 KG----AK-IDIKKMRKELGVPVIPT 145 (271)
T ss_dssp HT----CC-CCHHHHHHHHSSCEEEC
T ss_pred cc----cH-HHHHHHHHHcCCcEEEE
Confidence 10 11 13778888999876543
No 205
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.89 E-value=0.028 Score=50.33 Aligned_cols=35 Identities=31% Similarity=0.355 Sum_probs=26.1
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
||++|.++ |-.|+||||++..||..| | ...+|.|.
T Consensus 3 ~m~~i~i~-G~~GsGKsTla~~La~~l---~--~~~~d~d~ 37 (175)
T 1via_A 3 LAKNIVFI-GFMGSGKSTLARALAKDL---D--LVFLDSDF 37 (175)
T ss_dssp --CCEEEE-CCTTSCHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred CCCEEEEE-cCCCCCHHHHHHHHHHHc---C--CCEEcccH
Confidence 45667777 889999999999998876 3 34678764
No 206
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.82 E-value=0.46 Score=43.14 Aligned_cols=86 Identities=10% Similarity=0.128 Sum_probs=49.6
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 360 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 360 (532)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...++.+... +.+ +-+|.|+++..... .
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~----~ 151 (201)
T 2hup_A 77 RVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIV-QLLIGNKSDLSELR----E 151 (201)
T ss_dssp EEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGC----C
T ss_pred EEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCcccccc----c
Confidence 3678999998743322222233456799999988764 4566666666655542 344 56888997754311 1
Q ss_pred cCCchHHHHHHHhCC
Q 009574 361 FGRGSGSQVVQQFGI 375 (532)
Q Consensus 361 ~~~~~~~~l~~~~g~ 375 (532)
...+..+++.+.++.
T Consensus 152 v~~~~~~~~~~~~~~ 166 (201)
T 2hup_A 152 VSLAEAQSLAEHYDI 166 (201)
T ss_dssp SCHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHcCC
Confidence 112334555566554
No 207
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.82 E-value=0.059 Score=50.76 Aligned_cols=38 Identities=24% Similarity=0.272 Sum_probs=31.3
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHH-HCCCcEEEEEcCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADV 217 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA-~~G~rVllID~D~ 217 (532)
.++.|+ +..|+|||++|.++|...+ +.|.+|++++++.
T Consensus 31 ~l~~i~-G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 31 TTVLLT-GGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred eEEEEE-eCCCCCHHHHHHHHHHHHHHhcCCCceeecccC
Confidence 455555 9999999999999998754 5688999999885
No 208
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.81 E-value=0.37 Score=46.16 Aligned_cols=89 Identities=9% Similarity=0.028 Sum_probs=53.3
Q ss_pred CCCCEEEEcCCCCCChhh--------hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCC
Q 009574 284 GELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADG 355 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~--------~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~ 355 (532)
+.+.+.|+|||+...... ........+|.+++|+..+... ........+.+.+.+ +-+|+||++.....
T Consensus 50 ~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~--~~~~~~~~l~~~~~p-vilv~NK~Dl~~~~ 126 (258)
T 3a1s_A 50 KGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE--QSLYLLLEILEMEKK-VILAMTAIDEAKKT 126 (258)
T ss_dssp TTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH--HHHHHHHHHHTTTCC-EEEEEECHHHHHHT
T ss_pred CCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh--hHHHHHHHHHhcCCC-EEEEEECcCCCCcc
Confidence 456899999987432211 1111113678899998877542 233455566667777 46788998753311
Q ss_pred ccccccCCchHHHHHHHhCCCcEEe
Q 009574 356 KRYYPFGRGSGSQVVQQFGIPHLFD 380 (532)
Q Consensus 356 ~~~~~~~~~~~~~l~~~~g~~~l~~ 380 (532)
. .. ...+.+.+.+|.+++..
T Consensus 127 ~----i~-~~~~~l~~~lg~~vi~~ 146 (258)
T 3a1s_A 127 G----MK-IDRYELQKHLGIPVVFT 146 (258)
T ss_dssp T----CC-BCHHHHHHHHCSCEEEC
T ss_pred c----hH-HHHHHHHHHcCCCEEEE
Confidence 1 11 23678888888765543
No 209
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.80 E-value=0.2 Score=46.22 Aligned_cols=67 Identities=16% Similarity=0.136 Sum_probs=39.7
Q ss_pred CCCCEEEEcCCCCCChh-----------h---hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecc
Q 009574 284 GELDYLVIDMPPGTGDI-----------Q---LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMC 349 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~-----------~---~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~ 349 (532)
+.+.+.|+|||+ .+.. . ........+|.+++|+.....-.......++.+...+.+ +-+|+|++
T Consensus 77 ~~~~~~l~DtpG-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~ 154 (223)
T 4dhe_A 77 AEPVAHLVDLPG-YGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKP-IHSLLTKC 154 (223)
T ss_dssp TSCSEEEEECCC-CCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCC-EEEEEECG
T ss_pred CCCcEEEEcCCC-CCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEecc
Confidence 567899999987 3221 0 011112225678888877643223344566777776777 45788997
Q ss_pred ccc
Q 009574 350 HFD 352 (532)
Q Consensus 350 ~~~ 352 (532)
+..
T Consensus 155 Dl~ 157 (223)
T 4dhe_A 155 DKL 157 (223)
T ss_dssp GGS
T ss_pred ccC
Confidence 743
No 210
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.80 E-value=0.069 Score=55.83 Aligned_cols=40 Identities=30% Similarity=0.527 Sum_probs=34.2
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHH-CCCcEEEEEcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~-~G~rVllID~D~~ 218 (532)
+.++.++ +..|+||||++.++|..++. .|.+|+++++...
T Consensus 203 G~liiI~-G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s 243 (454)
T 2r6a_A 203 SDLIIVA-ARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS 243 (454)
T ss_dssp TCEEEEE-CCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 3466666 99999999999999999986 6899999998853
No 211
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=93.78 E-value=0.089 Score=54.69 Aligned_cols=67 Identities=12% Similarity=0.070 Sum_probs=35.8
Q ss_pred CCCCEEEEcCCCCCC-------h-hhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTG-------D-IQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~-------~-~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
....+.|+|||+-.. . .......+..+|.+++|+..... +..+ ....+.++..+.+ +-+|+|+++..
T Consensus 49 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d-~~~~~~l~~~~~p-vilv~NK~D~~ 124 (436)
T 2hjg_A 49 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYRTKKP-VVLAVNKLDNT 124 (436)
T ss_dssp CSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHTTCCSC-EEEEEECCCC-
T ss_pred CCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH-HHHHHHHHHcCCC-EEEEEECccCc
Confidence 556788999977421 0 11112224457888888776542 2222 3455666666776 45788997743
No 212
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.74 E-value=0.036 Score=49.93 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=26.1
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+++.|.++ |-.|+||||++..||..| |. -.+|.|.
T Consensus 4 ~~~~i~l~-G~~GsGKst~a~~La~~l---~~--~~i~~d~ 38 (185)
T 3trf_A 4 NLTNIYLI-GLMGAGKTSVGSQLAKLT---KR--ILYDSDK 38 (185)
T ss_dssp -CCEEEEE-CSTTSSHHHHHHHHHHHH---CC--CEEEHHH
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHh---CC--CEEEChH
Confidence 45677777 779999999999999877 43 3566664
No 213
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.72 E-value=0.21 Score=47.54 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=17.1
Q ss_pred eEEEEEeCcCCCcHHHHHHHHH
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLA 200 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA 200 (532)
..|+|+ |..|+||||+.-.|.
T Consensus 23 ~~I~lv-G~~g~GKStl~n~l~ 43 (260)
T 2xtp_A 23 LRIILV-GKTGTGKSAAGNSIL 43 (260)
T ss_dssp EEEEEE-ECTTSCHHHHHHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHh
Confidence 467777 899999999987764
No 214
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.72 E-value=0.08 Score=47.94 Aligned_cols=35 Identities=29% Similarity=0.243 Sum_probs=28.8
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
.|++. |-.|+||||++..|+..|...|.+|+..+.
T Consensus 2 ~I~l~-G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFE-GIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 56676 889999999999999999999999875543
No 215
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=93.60 E-value=0.18 Score=51.68 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=47.2
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch-HHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 286 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-FIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 286 yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s-~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
+.+.|+|||+...........+..+|.+++|+...... .......+..+...+.+.+-+++|+++..
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 142 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVV 142 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECcccc
Confidence 67999999874433333333455789999998887653 66677777777777765567889997753
No 216
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.58 E-value=0.083 Score=63.42 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=36.3
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
++++.|+ +..|+||||+|.++|...++.|.+|+.||++...
T Consensus 383 G~lilI~-G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~ 423 (1706)
T 3cmw_A 383 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 423 (1706)
T ss_dssp TSEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 4567766 9999999999999999999999999999998743
No 217
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.51 E-value=0.31 Score=50.61 Aligned_cols=65 Identities=14% Similarity=0.112 Sum_probs=36.7
Q ss_pred CCCCEEEEcCCCCCCh---------hhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCCCCEEEEEEeccc
Q 009574 284 GELDYLVIDMPPGTGD---------IQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLKVPCIAVVENMCH 350 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~---------~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~~~~~~gvV~N~~~ 350 (532)
++..+.|+|||+-... .......+..+|.+++|+.... .+..+ ..+.+.++..+.++ -+|+|+++
T Consensus 47 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d-~~i~~~l~~~~~p~-ilv~NK~D 121 (439)
T 1mky_A 47 YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED-ESLADFLRKSTVDT-ILVANKAE 121 (439)
T ss_dssp TTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH-HHHHHHHHHHTCCE-EEEEESCC
T ss_pred CCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHcCCCE-EEEEeCCC
Confidence 4456788999773211 0112223456888988887543 22221 23445555556664 57889965
No 218
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.50 E-value=0.07 Score=55.61 Aligned_cols=39 Identities=23% Similarity=0.453 Sum_probs=33.4
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHH-CCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~-~G~rVllID~D~ 217 (532)
+.++.|+ +..|+||||++.++|...+. .|.+|+++++..
T Consensus 200 G~l~ii~-G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~ 239 (444)
T 2q6t_A 200 GSLNIIA-ARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM 239 (444)
T ss_dssp TCEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3455555 99999999999999999997 589999999974
No 219
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.43 E-value=0.71 Score=39.76 Aligned_cols=68 Identities=13% Similarity=0.118 Sum_probs=40.0
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~~ 352 (532)
..+.+.|+|+|+...........+..+|.+++|...+. .++..+...++.+.. .+.+ +-+|.|+++..
T Consensus 49 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 121 (167)
T 1c1y_A 49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLE 121 (167)
T ss_dssp CEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCC-EEEEEECTTCG
T ss_pred EEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCc-EEEEEECcccc
Confidence 45678999998743222222222345688888876553 455555555544432 2555 56888997753
No 220
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.43 E-value=0.098 Score=48.71 Aligned_cols=38 Identities=5% Similarity=-0.027 Sum_probs=33.0
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+.+.++ |..|+||||++..+|..+...|.++..++++.
T Consensus 53 ~~~ll~-G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 53 QAIYLW-GPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp SEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 456666 88999999999999999999999999998754
No 221
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.42 E-value=0.28 Score=44.03 Aligned_cols=68 Identities=10% Similarity=0.155 Sum_probs=40.0
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC-----CCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-----KVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~-----~~~~~gvV~N~~~~~ 352 (532)
..+.+.|+|||+...........+..+|.+++|...+. .++..+...++.+... +.+ +-+|.|+++..
T Consensus 54 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~ 127 (199)
T 2gf0_A 54 SVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIP-VMLVGNKCDET 127 (199)
T ss_dssp EEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSC-EEEEEECTTCS
T ss_pred EEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCC
Confidence 34578999998743322222222345688888877654 3555555544444331 345 56888997754
No 222
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.29 E-value=0.052 Score=57.56 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=34.2
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHC-CCcEEEEEcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~-G~rVllID~D~~ 218 (532)
+.++.|+ +..|+||||++.++|..++.. |.+|++++++..
T Consensus 242 G~l~li~-G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s 282 (503)
T 1q57_A 242 GEVIMVT-SGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES 282 (503)
T ss_dssp TCEEEEE-ESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC
T ss_pred CeEEEEe-ecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC
Confidence 3455555 999999999999999999987 999999999763
No 223
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.28 E-value=0.05 Score=50.23 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=28.9
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHH-----HCC-CcEEEEEcC
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLA-----GMG-ARVGIFDAD 216 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA-----~~G-~rVllID~D 216 (532)
.||+++.|+ |..|+|||+.|..++..++ +.| ++|.+..+|
T Consensus 3 ~~~mi~l~t-G~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~ 48 (199)
T 2r2a_A 3 AMAEICLIT-GTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK 48 (199)
T ss_dssp -CCCEEEEE-CCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred cceeEEEEE-eCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence 356677766 9999999999999877765 567 555555444
No 224
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.27 E-value=0.077 Score=48.24 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=30.5
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
+++.++ |-.|+||||++..++..+..+|++|+++-.
T Consensus 4 ~i~vi~-G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~ 39 (184)
T 2orw_A 4 KLTVIT-GPMYSGKTTELLSFVEIYKLGKKKVAVFKP 39 (184)
T ss_dssp CEEEEE-ESTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEee
Confidence 455555 778999999999999999999999999753
No 225
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.24 E-value=0.075 Score=46.49 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=32.4
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
...+.++ |..|+||||++..++..+...|+++..++..
T Consensus 36 g~~~~l~-G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~ 73 (149)
T 2kjq_A 36 GQFIYVW-GEEGAGKSHLLQAWVAQALEAGKNAAYIDAA 73 (149)
T ss_dssp CSEEEEE-SSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence 3467776 8899999999999999998889888888764
No 226
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=93.24 E-value=0.56 Score=50.65 Aligned_cols=67 Identities=12% Similarity=0.056 Sum_probs=43.9
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
.+.+.|+|||+-..........+..+|.+++|+..+..-.......++.+...+++ +-+++|+++..
T Consensus 69 ~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vP-iIVViNKiDl~ 135 (594)
T 1g7s_A 69 LPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTP-FVVAANKIDRI 135 (594)
T ss_dssp CCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCC-EEEEEECGGGS
T ss_pred cCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCe-EEEEecccccc
Confidence 34699999987433222222224457999999887763333445566677777888 46788998764
No 227
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.21 E-value=0.1 Score=47.90 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=30.1
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 214 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID 214 (532)
+++|+++ |-.|+||||++..||..|...|.+|..++
T Consensus 9 ~~~I~l~-G~~GsGKsT~~~~L~~~l~~~~~~v~~~~ 44 (215)
T 1nn5_A 9 GALIVLE-GVDRAGKSTQSRKLVEALCAAGHRAELLR 44 (215)
T ss_dssp CCEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence 3577777 77999999999999999998899885543
No 228
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.19 E-value=0.79 Score=43.38 Aligned_cols=67 Identities=16% Similarity=0.103 Sum_probs=37.3
Q ss_pred CCCCEEEEcCCCCCChhh---------hh---hhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC------CCCEEEEE
Q 009574 284 GELDYLVIDMPPGTGDIQ---------LT---LCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL------KVPCIAVV 345 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~---------~~---~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~------~~~~~gvV 345 (532)
+...++|+|||+-..... +. ......+|.+++|+..+..... ....++.+.+. +. .+-++
T Consensus 68 ~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~-~~~~~~~l~~~~~~~~~~~-~iilv 145 (247)
T 3lxw_A 68 DKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQ-DQQAVRQVRDMFGEDVLKW-MVIVF 145 (247)
T ss_dssp TTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHH-HHHHHHHHHHHHCGGGGGG-EEEEE
T ss_pred CCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHH-HHHHHHHHHHHhChhhhcc-EEEEE
Confidence 456799999987422100 00 0112467889999887754332 23344444432 23 45678
Q ss_pred Eeccccc
Q 009574 346 ENMCHFD 352 (532)
Q Consensus 346 ~N~~~~~ 352 (532)
.|+.+..
T Consensus 146 ~nK~Dl~ 152 (247)
T 3lxw_A 146 TRKEDLA 152 (247)
T ss_dssp ECGGGGT
T ss_pred EchHhcC
Confidence 8997653
No 229
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.17 E-value=0.12 Score=47.61 Aligned_cols=40 Identities=33% Similarity=0.422 Sum_probs=33.9
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
+.+|+|. |..|+||||++..|+..+...|.++..|..|..
T Consensus 22 g~~v~I~-G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 22 RQLVALS-GAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CEEEEEE-CCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 4588888 899999999999999999876777888887753
No 230
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.15 E-value=0.089 Score=48.16 Aligned_cols=34 Identities=24% Similarity=0.150 Sum_probs=27.2
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 214 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID 214 (532)
++|+|. |-.|+||||++..||..|...| +|...+
T Consensus 5 ~~I~i~-G~~GsGKsT~~~~L~~~l~~~g-~~~~~~ 38 (213)
T 2plr_A 5 VLIAFE-GIDGSGKSSQATLLKDWIELKR-DVYLTE 38 (213)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHHHTTTS-CEEEEE
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHhhcC-CEEEec
Confidence 466666 8899999999999999998777 665443
No 231
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.13 E-value=0.053 Score=48.08 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=27.7
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
||++|.++ |-.|+||||+|..||..| |. -++|.|.
T Consensus 1 m~~~I~l~-G~~GsGKsT~a~~La~~l---g~--~~id~d~ 35 (173)
T 1e6c_A 1 MTEPIFMV-GARGCGMTTVGRELARAL---GY--EFVDTDI 35 (173)
T ss_dssp CCCCEEEE-SCTTSSHHHHHHHHHHHH---TC--EEEEHHH
T ss_pred CCceEEEE-CCCCCCHHHHHHHHHHHh---CC--cEEcccH
Confidence 56778887 789999999999998877 43 3678774
No 232
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.13 E-value=0.034 Score=50.07 Aligned_cols=35 Identities=34% Similarity=0.484 Sum_probs=26.6
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
|+++|.++ |-.|+||||+|..||..| |.. ++|.|.
T Consensus 1 M~~~I~l~-G~~GsGKsT~a~~La~~l---g~~--~id~D~ 35 (184)
T 2iyv_A 1 MAPKAVLV-GLPGSGKSTIGRRLAKAL---GVG--LLDTDV 35 (184)
T ss_dssp -CCSEEEE-CSTTSSHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred CCCeEEEE-CCCCCCHHHHHHHHHHHc---CCC--EEeCch
Confidence 34567777 899999999999998876 443 678875
No 233
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=93.09 E-value=0.94 Score=42.01 Aligned_cols=88 Identities=15% Similarity=0.089 Sum_probs=52.6
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCcccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYY 359 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p-~~~s~~~~~~~i~~l~~~---~~~~~gvV~N~~~~~~~~~~~~ 359 (532)
..+.+-|.||++.-....+...-...++.+++|... +..++..+...++.+... ++ .+-+|.|+++.....
T Consensus 60 ~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~-piilVgNK~Dl~~~r---- 134 (216)
T 4dkx_A 60 RTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV-IIMLVGNKTDLADKR---- 134 (216)
T ss_dssp CEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS-EEEEEEECTTCGGGC----
T ss_pred eEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCC-eEEEEeeccchHhcC----
Confidence 456678999987433222222224467888777654 455777777777666542 33 356888997754321
Q ss_pred ccCCchHHHHHHHhCCC
Q 009574 360 PFGRGSGSQVVQQFGIP 376 (532)
Q Consensus 360 ~~~~~~~~~l~~~~g~~ 376 (532)
....+..+++++.++.+
T Consensus 135 ~V~~~e~~~~a~~~~~~ 151 (216)
T 4dkx_A 135 QVSIEEGERKAKELNVM 151 (216)
T ss_dssp CSCHHHHHHHHHHHTCE
T ss_pred cccHHHHhhHHHHhCCe
Confidence 12334567777887753
No 234
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.04 E-value=1 Score=39.26 Aligned_cols=67 Identities=9% Similarity=0.042 Sum_probs=39.0
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc-------CCCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK-------LKVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~-------~~~~~~gvV~N~~~~~ 352 (532)
.+.+.|+|+|+..............+|.+++|...+. .+...+...++.+.. .+.+ +-+|.|+++..
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~ 129 (177)
T 1wms_A 55 FVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVILGNKIDIS 129 (177)
T ss_dssp EEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSC-EEEEEECTTCS
T ss_pred EEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCc-EEEEEECCccc
Confidence 3578999998743322222222445788888876654 345555544444432 3445 56888997754
No 235
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.03 E-value=0.34 Score=43.36 Aligned_cols=69 Identities=9% Similarity=0.024 Sum_probs=36.1
Q ss_pred CCCCEEEEcCCCCCCh---hhhhh-hhhcCCCeEEEEeCCC--cchHHHHHHHHHHHHc-------CCCCEEEEEEeccc
Q 009574 284 GELDYLVIDMPPGTGD---IQLTL-CQVVPLTAAVIVTTPQ--KLAFIDVAKGVRMFSK-------LKVPCIAVVENMCH 350 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~---~~~~~-~~~~~~d~viiV~~p~--~~s~~~~~~~i~~l~~-------~~~~~~gvV~N~~~ 350 (532)
..+.+.|+|||+.... ..... .....+|.+++|+..+ ..++..+...+..+.. .+.+ +-+|.|+++
T Consensus 89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D 167 (193)
T 2ged_A 89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID-ILIACNKSE 167 (193)
T ss_dssp CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECTT
T ss_pred cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCC-EEEEEEchH
Confidence 3567888899863221 11111 0011257888887775 3445444443332221 2455 568889977
Q ss_pred ccC
Q 009574 351 FDA 353 (532)
Q Consensus 351 ~~~ 353 (532)
...
T Consensus 168 l~~ 170 (193)
T 2ged_A 168 LFT 170 (193)
T ss_dssp STT
T ss_pred hcC
Confidence 543
No 236
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=92.98 E-value=0.29 Score=53.97 Aligned_cols=65 Identities=14% Similarity=0.054 Sum_probs=39.8
Q ss_pred CCEEEEcCCCCCCh----hhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 286 LDYLVIDMPPGTGD----IQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 286 yD~VIIDtpp~~~~----~~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
+++.|||||+ .+. .......+..+|.+++|+.++.. +..+...+.+.+...+.+ +-+|+|+++..
T Consensus 174 ~~l~LiDTPG-l~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~ 243 (695)
T 2j69_A 174 KGIEIVDSPG-LNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLT-VFFLVNAWDQV 243 (695)
T ss_dssp TTEEEEECCC-HHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCC-EEEEEECGGGG
T ss_pred CCeEEEECCC-CCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCC-EEEEEECcccc
Confidence 6899999987 221 11122224467999999887543 444443333455555666 67888997753
No 237
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=92.97 E-value=0.16 Score=58.56 Aligned_cols=69 Identities=16% Similarity=0.253 Sum_probs=45.8
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
+.+.+.|+|||+-..........+..+|.+++|+.............+..+...+++.+-+++|+++..
T Consensus 357 ~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv 425 (1289)
T 3avx_A 357 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMV 425 (1289)
T ss_dssp SSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTC
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Confidence 567899999987332222222334568999999887654444455556666667888667889997753
No 238
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.91 E-value=0.087 Score=46.86 Aligned_cols=35 Identities=23% Similarity=0.135 Sum_probs=25.2
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+++|.+. |-.|+||||+|..|+.. ......||.|.
T Consensus 2 ~~~I~i~-G~~GsGKST~a~~L~~~----~~~~~~i~~d~ 36 (181)
T 1ly1_A 2 KKIILTI-GCPGSGKSTWAREFIAK----NPGFYNINRDD 36 (181)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHH----STTEEEECHHH
T ss_pred CeEEEEe-cCCCCCHHHHHHHHHhh----cCCcEEecHHH
Confidence 3456555 99999999999988872 23456777764
No 239
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=92.91 E-value=0.17 Score=54.75 Aligned_cols=85 Identities=12% Similarity=0.061 Sum_probs=50.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCC
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 363 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 363 (532)
..|.+.|+|||+-..........+..+|.+++|+.............+......+++ +-+++|+++..... ..
T Consensus 69 ~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ip-iIvViNKiDl~~a~------~~ 141 (599)
T 3cb4_D 69 ETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLE-VVPVLNKIDLPAAD------PE 141 (599)
T ss_dssp CEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCE-EEEEEECTTSTTCC------HH
T ss_pred CeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEeeeccCccccc------HH
Confidence 357889999987543322223335567999999887543222333444445556777 55788997753321 11
Q ss_pred chHHHHHHHhCC
Q 009574 364 GSGSQVVQQFGI 375 (532)
Q Consensus 364 ~~~~~l~~~~g~ 375 (532)
...+++.+.++.
T Consensus 142 ~v~~ei~~~lg~ 153 (599)
T 3cb4_D 142 RVAEEIEDIVGI 153 (599)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHhCC
Confidence 345667777764
No 240
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.89 E-value=0.12 Score=62.83 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=36.0
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
+.++.++ +..|+||||+|.++|..+++.|.+|+.||+....
T Consensus 383 G~lilI~-G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~ 423 (2050)
T 3cmu_A 383 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 423 (2050)
T ss_dssp TSEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCH
Confidence 4566666 9999999999999999999999999999998643
No 241
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.85 E-value=0.26 Score=44.63 Aligned_cols=68 Identities=13% Similarity=0.057 Sum_probs=39.5
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc-------CCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK-------LKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~-------~~~~~~gvV~N~~~~~ 352 (532)
..+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 130 (207)
T 1vg8_A 55 RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP-FVVLGNKIDLE 130 (207)
T ss_dssp CEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSC-EEEEEECTTSS
T ss_pred EEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCc-EEEEEECCCCc
Confidence 34678999998742211111222446788998887654 355555554444432 2344 56888997754
No 242
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.85 E-value=0.92 Score=40.78 Aligned_cols=67 Identities=13% Similarity=0.020 Sum_probs=39.8
Q ss_pred CCCCEEEEcCCCCCChhhhh---hhhhcCCCeEEEEeCCCcc---hHHHHHHHHHHHH--cCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLT---LCQVVPLTAAVIVTTPQKL---AFIDVAKGVRMFS--KLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~---~~~~~~~d~viiV~~p~~~---s~~~~~~~i~~l~--~~~~~~~gvV~N~~~~ 351 (532)
..+.+.|+|+|+........ ...+..+|.+++|...+.. +...+...+..+. ..+.+ +-+|.|+++.
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~p-iilv~nK~Dl 141 (196)
T 3llu_A 67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMN-FEVFIHKVDG 141 (196)
T ss_dssp TSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGG
T ss_pred CeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCc-EEEEEecccc
Confidence 56789999998753321111 1224467999999887764 3344444444432 22444 5688899764
No 243
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=92.83 E-value=0.27 Score=55.46 Aligned_cols=68 Identities=13% Similarity=0.025 Sum_probs=45.0
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
..+.+.|||||+-..........+..+|.+++|+.............+..+...++++ -+++|+++..
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKP-VVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEE-EEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCe-EEEEECCCcc
Confidence 4678999999885443333333456789999998876653334445555555667775 4788997743
No 244
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.83 E-value=0.13 Score=47.26 Aligned_cols=36 Identities=19% Similarity=0.100 Sum_probs=30.0
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 214 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID 214 (532)
+++|+++ |-.|+||||++..||..|...+..|.++.
T Consensus 10 ~~~I~l~-G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 10 GKFIVFE-GLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp SCEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4577777 78899999999999999998888885544
No 245
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.82 E-value=0.073 Score=48.84 Aligned_cols=34 Identities=35% Similarity=0.515 Sum_probs=26.7
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
||++|+++ |-.|+||||++..||. .|.. ++|+|.
T Consensus 1 m~~~i~l~-G~~GsGKST~~~~La~----lg~~--~id~d~ 34 (206)
T 1jjv_A 1 MTYIVGLT-GGIGSGKTTIANLFTD----LGVP--LVDADV 34 (206)
T ss_dssp CCEEEEEE-CSTTSCHHHHHHHHHT----TTCC--EEEHHH
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHH----CCCc--ccchHH
Confidence 45788888 8899999999988875 4654 568875
No 246
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.77 E-value=0.068 Score=53.19 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=33.4
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHC------CCcEEEEEcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~------G~rVllID~D~~ 218 (532)
+.++.|+ |..|+||||++.++|...+.. |.+|+.||++..
T Consensus 107 G~i~~i~-G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 107 RTMTEFF-GEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CcEEEEE-CCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 3466666 889999999999999987665 789999999863
No 247
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.67 E-value=1.3 Score=40.47 Aligned_cols=68 Identities=4% Similarity=-0.071 Sum_probs=41.7
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHH-HHHHHHHHHcC--CCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFID-VAKGVRMFSKL--KVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~-~~~~i~~l~~~--~~~~~gvV~N~~~~~ 352 (532)
..+.+.|+|+|+......+....+..+|.+++|...+. .++.. +...++.+... +.+ +-+|.|+++..
T Consensus 73 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~ 144 (214)
T 3q3j_B 73 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR-VLLIGCKTDLR 144 (214)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSE-EEEEEECGGGG
T ss_pred EEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhc
Confidence 45678899998743222222222446788988887654 45555 45556666543 344 56788998754
No 248
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.66 E-value=0.099 Score=56.34 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=35.1
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCC-CcEEEEEcCC
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMG-ARVGIFDADV 217 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G-~rVllID~D~ 217 (532)
+.+.+|.|+ |-.|+||||+|..|+..|..+| +++.++|.|.
T Consensus 394 q~~~~I~l~-GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 394 TQGFTIFLT-GYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp TCCEEEEEE-CSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred ccceEEEee-cCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 345677776 8899999999999999999888 8999999875
No 249
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=92.60 E-value=0.25 Score=52.13 Aligned_cols=68 Identities=12% Similarity=0.083 Sum_probs=43.7
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
+.+.+.|+|||+-.............+|.+++|+..+..........+..+...+++ +-+++|+++..
T Consensus 49 ~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vP-iIVviNKiDl~ 116 (501)
T 1zo1_I 49 ENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVP-VVVAVNKIDKP 116 (501)
T ss_dssp TSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCC-EEEEEECSSSS
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCce-EEEEEEecccc
Confidence 345678999988433222222234567889999876554334445556666777888 66888998753
No 250
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.59 E-value=1.4 Score=39.15 Aligned_cols=82 Identities=15% Similarity=0.142 Sum_probs=47.5
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCcccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYY 359 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~----~~~~~gvV~N~~~~~~~~~~~~ 359 (532)
.+.+.|+||++..... . +..+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++......+
T Consensus 66 ~~~l~i~Dt~G~~~~~---~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~-- 137 (184)
T 3ihw_A 66 SYLLLIRDEGGPPELQ---F--AAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVP-MVLVGTQDAISAANPR-- 137 (184)
T ss_dssp EEEEEEEECSSSCCHH---H--HHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSC-EEEEEECTTCBTTBCC--
T ss_pred EEEEEEEECCCChhhh---e--ecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccccc--
Confidence 4567889997643322 1 234688888876554 4566767777777654 344 4588899775321111
Q ss_pred ccCCchHHHHHHHhC
Q 009574 360 PFGRGSGSQVVQQFG 374 (532)
Q Consensus 360 ~~~~~~~~~l~~~~g 374 (532)
....+..+++.+.++
T Consensus 138 ~v~~~~~~~~~~~~~ 152 (184)
T 3ihw_A 138 VIDDSRARKLSTDLK 152 (184)
T ss_dssp CSCHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHcC
Confidence 122234556666665
No 251
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.59 E-value=0.89 Score=41.01 Aligned_cols=67 Identities=18% Similarity=0.163 Sum_probs=38.8
Q ss_pred CCCEEEEcCCCCCChhh-hhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~-~~~~~~~~~d~viiV~~p~-~~s~~~~~~~i~~l~~----~~~~~~gvV~N~~~~~ 352 (532)
.+.+.|+|+++...... +.......+|.+++|...+ ..++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 71 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 143 (195)
T 3cbq_A 71 EVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLA 143 (195)
T ss_dssp EEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCT
T ss_pred EEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEeechhcc
Confidence 45678889976432211 1111133468888887765 3456666666655543 2455 45888997754
No 252
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.54 E-value=0.13 Score=51.08 Aligned_cols=42 Identities=24% Similarity=0.270 Sum_probs=34.2
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHH--CCCcEEEEEcCCCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG--MGARVGIFDADVYG 219 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~--~G~rVllID~D~~~ 219 (532)
.+.+|+++ |-.|+||||++..|+..+.. .+.+|.+|..|...
T Consensus 91 ~p~iigI~-GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 91 VPYIIGIA-GSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CCEEEEEE-CCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 34578887 88999999999999988874 35689999999753
No 253
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.53 E-value=0.058 Score=49.39 Aligned_cols=33 Identities=36% Similarity=0.425 Sum_probs=25.6
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
|++|+++ |..|+||||++..||. + | +-++|+|.
T Consensus 1 m~~i~i~-G~~GsGKSTl~~~L~~-~---g--~~~i~~d~ 33 (204)
T 2if2_A 1 MKRIGLT-GNIGCGKSTVAQMFRE-L---G--AYVLDADK 33 (204)
T ss_dssp CCEEEEE-ECTTSSHHHHHHHHHH-T---T--CEEEEHHH
T ss_pred CeEEEEE-CCCCcCHHHHHHHHHH-C---C--CEEEEccH
Confidence 4578888 8899999999988877 4 5 45677765
No 254
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.47 E-value=0.096 Score=50.15 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=26.3
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
|++|+|+ |-.|+||||+|..||..+ |. .+|+.|.
T Consensus 1 M~li~I~-G~~GSGKSTla~~La~~~---~~--~~i~~D~ 34 (253)
T 2ze6_A 1 MLLHLIY-GPTCSGKTDMAIQIAQET---GW--PVVALDR 34 (253)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHH---CC--CEEECCS
T ss_pred CeEEEEE-CCCCcCHHHHHHHHHhcC---CC--eEEeccH
Confidence 4566666 889999999999998876 33 4677776
No 255
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=92.46 E-value=0.3 Score=50.19 Aligned_cols=67 Identities=12% Similarity=0.103 Sum_probs=41.7
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch-HHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 286 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-FIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 286 yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s-~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
+.+.|+|||+-..........+..+|.+++|+...... .......+..+...+.+.+-+++|+++..
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~ 150 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELV 150 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCC
Confidence 57999999873222222222344679999998877532 34444555555556665567889997743
No 256
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.46 E-value=0.11 Score=56.38 Aligned_cols=42 Identities=26% Similarity=0.238 Sum_probs=35.7
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
++++|.|+ |-.|+||||+|..||..|..+|.++..+|.|.-.
T Consensus 51 ~g~lIvLt-GlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR 92 (630)
T 1x6v_B 51 RGCTVWLT-GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 92 (630)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHT
T ss_pred CCCEEEEE-eCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhh
Confidence 45566666 8999999999999999999999999999877643
No 257
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.44 E-value=0.13 Score=54.73 Aligned_cols=41 Identities=15% Similarity=0.251 Sum_probs=34.4
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
++..+|.++ |-.|+||||+|..||..|...|.++.+++.|.
T Consensus 33 ~~~~lIvlv-GlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 33 NSPTVIVMV-GLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp CCCEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 334455555 99999999999999999998899999999885
No 258
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.37 E-value=0.11 Score=52.03 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=32.7
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHH------CCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~------~G~rVllID~D~ 217 (532)
+.++.|+ |..|+||||++.++|...+. .|.+|+.||++.
T Consensus 122 G~i~~I~-G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 122 MAITEAF-GEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SEEEEEE-CCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4566666 99999999999999998654 578999999986
No 259
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.36 E-value=0.86 Score=40.70 Aligned_cols=67 Identities=12% Similarity=0.064 Sum_probs=41.2
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~-~~i~~l~~~--~~~~~gvV~N~~~~~ 352 (532)
.+.+.|+|+|+...........+..+|.+++|..... .++..+. ..+..+... +.+ +-+|.|+++..
T Consensus 65 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 135 (194)
T 2atx_A 65 QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-FLLIGTQIDLR 135 (194)
T ss_dssp EEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECTTST
T ss_pred EEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhc
Confidence 4678899998743222222222445788988887654 3555555 455555543 555 55888997753
No 260
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.33 E-value=0.097 Score=47.05 Aligned_cols=35 Identities=29% Similarity=0.295 Sum_probs=27.1
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
+|+++|+++ |-.|+||||++..||..+ | ...+|+|
T Consensus 4 ~~~~~I~l~-G~~GsGKsT~~~~L~~~l---~--~~~i~~d 38 (194)
T 1qf9_A 4 SKPNVVFVL-GGPGSGKGTQCANIVRDF---G--WVHLSAG 38 (194)
T ss_dssp CCCEEEEEE-ESTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred CcCcEEEEE-CCCCCCHHHHHHHHHHHh---C--CeEeeHH
Confidence 356777777 889999999999998876 4 3567775
No 261
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.29 E-value=0.15 Score=50.32 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=32.9
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHH-HCCCcEEEEEcC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDAD 216 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA-~~G~rVllID~D 216 (532)
.+-+.++ |..|+|||++|..+|..+. +.|++|+.+.+.
T Consensus 152 ~~~lll~-G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLY-GDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEE-CSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CceEEEE-CCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 3456666 8899999999999999999 999999998764
No 262
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.25 E-value=0.14 Score=49.66 Aligned_cols=39 Identities=33% Similarity=0.407 Sum_probs=30.2
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHC----------CCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM----------GARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~----------G~rVllID~D~ 217 (532)
+.+++++ |..|+||||++.++|..++.. +.+|+++++..
T Consensus 30 G~i~~i~-G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 30 GTVGALV-SPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence 3577777 999999999999999977752 35677776653
No 263
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.24 E-value=0.1 Score=51.84 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=28.7
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
+|.++|.++ |-.|+||||+|..||..+ ...+||+|..
T Consensus 3 ~m~~~i~i~-GptGsGKTtla~~La~~l-----~~~iis~Ds~ 39 (323)
T 3crm_A 3 SLPPAIFLM-GPTAAGKTDLAMALADAL-----PCELISVDSA 39 (323)
T ss_dssp CCCEEEEEE-CCTTSCHHHHHHHHHHHS-----CEEEEEECTT
T ss_pred CCCcEEEEE-CCCCCCHHHHHHHHHHHc-----CCcEEeccch
Confidence 355566666 889999999999998765 3678899864
No 264
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.22 E-value=0.13 Score=50.64 Aligned_cols=42 Identities=31% Similarity=0.322 Sum_probs=33.7
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHH--HCCCcEEEEEcCCCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYG 219 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA--~~G~rVllID~D~~~ 219 (532)
.+.+|+++ |..|+||||++..|+..+. -.+-+|.+|++|-..
T Consensus 79 ~g~iigI~-G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 79 IPYIISIA-GSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCEEEEEE-ECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 34688888 8899999999999998886 334579999998643
No 265
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.19 E-value=0.12 Score=51.80 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=27.9
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
++|+|+ |-.|+||||+|..||..+. +.+|++|-.
T Consensus 8 ~lI~I~-GptgSGKTtla~~La~~l~-----~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIV-GPTASGKTELSIEVAKKFN-----GEIISGDSM 41 (340)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred ceEEEE-CCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence 466666 8899999999999988763 688999975
No 266
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.06 E-value=0.85 Score=40.79 Aligned_cols=90 Identities=12% Similarity=0.117 Sum_probs=50.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHH-HHHHHHHHcC--CCCEEEEEEecccccCCCcccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL--KVPCIAVVENMCHFDADGKRYY 359 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~-~~~i~~l~~~--~~~~~gvV~N~~~~~~~~~~~~ 359 (532)
..+.+.|+|+|+...........+..+|.+++|...+. .++..+ ...+..+... +.+ +-+|.|+++......+
T Consensus 69 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~-- 145 (194)
T 3reg_A 69 EEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAK-TVLVGLKVDLRKDGSD-- 145 (194)
T ss_dssp EEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSE-EEEEEECGGGCCTTTT--
T ss_pred EEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccCCCC--
Confidence 34567999998743222222222446788888887654 345554 3444555432 344 5688899876432111
Q ss_pred ccCCchHHHHHHHhCCC
Q 009574 360 PFGRGSGSQVVQQFGIP 376 (532)
Q Consensus 360 ~~~~~~~~~l~~~~g~~ 376 (532)
....+..+++.+.++.+
T Consensus 146 ~~~~~~~~~~~~~~~~~ 162 (194)
T 3reg_A 146 DVTKQEGDDLCQKLGCV 162 (194)
T ss_dssp CCCHHHHHHHHHHHTCS
T ss_pred cccHHHHHHHHHhcCCC
Confidence 12234566677777754
No 267
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=91.99 E-value=0.37 Score=51.37 Aligned_cols=66 Identities=12% Similarity=-0.023 Sum_probs=40.3
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~--~~~~gvV~N~~~~~ 352 (532)
..+.+.|+|+|+...........+..+|.+++|+..+.. ......++.+...+ .++ -+|.|+++..
T Consensus 96 ~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pv-ilV~NK~Dl~ 163 (535)
T 3dpu_A 96 KECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPV-IVVMNKIDEN 163 (535)
T ss_dssp TTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCE-EEEECCTTTC
T ss_pred ceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCE-EEEEECCCcc
Confidence 467899999988432222211223357888888876533 44555566665543 564 5889997754
No 268
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.98 E-value=0.12 Score=48.55 Aligned_cols=39 Identities=18% Similarity=0.111 Sum_probs=31.7
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHH------CCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~------~G~rVllID~D~ 217 (532)
+.+++++ |..|+||||++..+|...+. .+.+|+.+|...
T Consensus 24 G~~~~i~-G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 24 GSITEMF-GEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TSEEEEE-CCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 3577777 89999999999999986443 367899999875
No 269
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.93 E-value=0.11 Score=47.39 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=27.5
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
+++|++. |-.|+||||++..||..| .|.++..++.
T Consensus 4 ~~~I~l~-G~~GsGKsT~~~~L~~~l--~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFE-GLDKSGKTTQCMNIMESI--PANTIKYLNF 38 (204)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHTS--CGGGEEEEES
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHHH--CCCceEEEec
Confidence 4577777 889999999999998877 4677776653
No 270
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.92 E-value=0.11 Score=47.38 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=27.9
Q ss_pred cCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 175 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 175 ~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
.+.|++|+|+ |-.|+||||++..||..+ |. ..+|+|
T Consensus 12 ~~~~~~I~l~-G~~GsGKsT~~~~L~~~~---g~--~~i~~d 47 (203)
T 1ukz_A 12 PDQVSVIFVL-GGPGAGKGTQCEKLVKDY---SF--VHLSAG 47 (203)
T ss_dssp TTTCEEEEEE-CSTTSSHHHHHHHHHHHS---SC--EEEEHH
T ss_pred CCCCcEEEEE-CCCCCCHHHHHHHHHHHc---Cc--eEEeHH
Confidence 4456788887 889999999999988764 54 567776
No 271
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=91.92 E-value=0.048 Score=59.09 Aligned_cols=69 Identities=16% Similarity=0.073 Sum_probs=34.3
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch-------HHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-------FIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s-------~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
..+.+.|||||+-..........+..+|.+++|+...... .......+..+...+++.+-+|+|+++..
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLM 328 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGG
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 5678999999874322222222234568888887655321 23345556667778887677889998753
No 272
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.88 E-value=0.059 Score=49.62 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=29.9
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
+|+|. |-.|+||||++..|+..|...|.+|.++..
T Consensus 2 ~I~i~-G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~ 36 (214)
T 1gtv_A 2 LIAIE-GVDGAGKRTLVEKLSGAFRAAGRSVATLAF 36 (214)
T ss_dssp EEEEE-EEEEEEHHHHHHHHHHHHHEEEEEEEEEES
T ss_pred EEEEE-cCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 56666 888999999999999999888888887753
No 273
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.88 E-value=0.095 Score=46.33 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=26.4
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
|.+|.++ |-.|+||||++..||..| |.+ ++|+|.
T Consensus 7 ~~~i~l~-G~~GsGKSTva~~La~~l---g~~--~id~D~ 40 (168)
T 1zuh_A 7 MQHLVLI-GFMGSGKSSLAQELGLAL---KLE--VLDTDM 40 (168)
T ss_dssp -CEEEEE-SCTTSSHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred cceEEEE-CCCCCCHHHHHHHHHHHh---CCC--EEEChH
Confidence 5688887 889999999999988876 444 567775
No 274
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.88 E-value=0.076 Score=48.33 Aligned_cols=36 Identities=36% Similarity=0.391 Sum_probs=26.9
Q ss_pred cCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 175 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 175 ~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
.+.+++|+++ |..|+||||++..||.. |. .++|+|.
T Consensus 5 ~~~~~~I~i~-G~~GsGKST~~~~La~~----g~--~~id~d~ 40 (203)
T 1uf9_A 5 AKHPIIIGIT-GNIGSGKSTVAALLRSW----GY--PVLDLDA 40 (203)
T ss_dssp -CCCEEEEEE-ECTTSCHHHHHHHHHHT----TC--CEEEHHH
T ss_pred ccCceEEEEE-CCCCCCHHHHHHHHHHC----CC--EEEcccH
Confidence 3445688888 88999999999888764 54 4678884
No 275
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=91.86 E-value=0.4 Score=44.60 Aligned_cols=38 Identities=16% Similarity=0.002 Sum_probs=31.2
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
.+.+..++ |--|+||||....++..+..+|++|+++-.
T Consensus 27 ~G~I~vit-G~M~sGKTT~Llr~~~r~~~~g~kvli~kp 64 (219)
T 3e2i_A 27 SGWIECIT-GSMFSGKSEELIRRLRRGIYAKQKVVVFKP 64 (219)
T ss_dssp CCEEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCceEEEEe
Confidence 34566555 778999999999999999999999999843
No 276
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.82 E-value=0.2 Score=44.45 Aligned_cols=36 Identities=31% Similarity=0.380 Sum_probs=27.0
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHH-------CCCcEEEEEc
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAG-------MGARVGIFDA 215 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~-------~G~rVllID~ 215 (532)
+.+.++ |..|+||||++..+|..+.. .+.++..+++
T Consensus 44 ~~~ll~-G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 44 NNPVLI-GEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp CEEEEE-CCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred CceEEE-CCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 345555 99999999999999999877 3455555544
No 277
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.81 E-value=0.11 Score=50.78 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=31.4
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCC--CcEEEE-EcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMG--ARVGIF-DADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G--~rVllI-D~D~~ 218 (532)
+.+|+|+ |..|+||||++..|+..+...| .++..+ ..|..
T Consensus 31 ~~ii~I~-G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 31 PLFIFFS-GPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 4578887 8899999999999999998654 444444 88864
No 278
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.77 E-value=0.11 Score=45.67 Aligned_cols=34 Identities=24% Similarity=0.191 Sum_probs=25.1
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
|++|.++ |-.|+||||++..||..+ |+. .+|.|.
T Consensus 1 M~~i~l~-G~~GsGKsT~~~~L~~~l---~~~--~i~~d~ 34 (173)
T 3kb2_A 1 MTLIILE-GPDCCFKSTVAAKLSKEL---KYP--IIKGSS 34 (173)
T ss_dssp -CEEEEE-CSSSSSHHHHHHHHHHHH---CCC--EEECCC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHh---CCe--eecCcc
Confidence 3466666 889999999999988776 433 567774
No 279
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.69 E-value=0.1 Score=47.69 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=26.4
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
|++|++. |-.|+||||++..||..| |.. .+|.|.
T Consensus 25 ~~~i~l~-G~~GsGKsTl~~~La~~l---~~~--~i~~d~ 58 (199)
T 3vaa_A 25 MVRIFLT-GYMGAGKTTLGKAFARKL---NVP--FIDLDW 58 (199)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHc---CCC--EEcchH
Confidence 4577777 899999999999999887 443 456664
No 280
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.57 E-value=0.68 Score=41.32 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=24.7
Q ss_pred CeEEEEeCCCc-chHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 311 TAAVIVTTPQK-LAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 311 d~viiV~~p~~-~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
|.+++|+..+. .+... ...++.+...+.+ +-+|+|+++..
T Consensus 107 ~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~p-~i~v~nK~Dl~ 147 (195)
T 1svi_A 107 KAVVQIVDLRHAPSNDD-VQMYEFLKYYGIP-VIVIATKADKI 147 (195)
T ss_dssp EEEEEEEETTSCCCHHH-HHHHHHHHHTTCC-EEEEEECGGGS
T ss_pred CEEEEEEECCCCCCHHH-HHHHHHHHHcCCC-EEEEEECcccC
Confidence 67777776544 33333 3455666666676 56788997753
No 281
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=91.56 E-value=0.38 Score=50.57 Aligned_cols=67 Identities=13% Similarity=0.177 Sum_probs=44.9
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 351 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~ 351 (532)
+.+.+.|+|||+-..........+..+|.+++|+.............+..++..+++. -+++|+++.
T Consensus 71 ~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl 137 (482)
T 1wb1_A 71 ENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDN 137 (482)
T ss_dssp TTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTS
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCc
Confidence 3567999999873222222223345689999999876543344555666777788887 788899764
No 282
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.56 E-value=0.17 Score=46.39 Aligned_cols=38 Identities=32% Similarity=0.431 Sum_probs=31.1
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
+.+|+++ |..|+||||++..|+..+.. ++.+++.|...
T Consensus 6 ~~~i~i~-G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~ 43 (211)
T 3asz_A 6 PFVIGIA-GGTASGKTTLAQALARTLGE---RVALLPMDHYY 43 (211)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCB
T ss_pred cEEEEEE-CCCCCCHHHHHHHHHHHhCC---CeEEEecCccc
Confidence 4688888 77899999999999887743 68899998754
No 283
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.51 E-value=0.12 Score=46.47 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=25.1
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+++|.+. |-.|+||||++..||..| |.. ++|.|.
T Consensus 5 ~~~I~l~-G~~GsGKST~~~~L~~~l---~~~--~i~~D~ 38 (193)
T 2rhm_A 5 PALIIVT-GHPATGKTTLSQALATGL---RLP--LLSKDA 38 (193)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHc---CCe--EecHHH
Confidence 3566666 889999999999999877 444 456553
No 284
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.41 E-value=0.085 Score=47.86 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=26.5
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+++|++. |-.|+||||+|..||..| | ...+|+|.
T Consensus 12 ~~~I~l~-G~~GsGKsT~a~~L~~~l---~--~~~i~~d~ 45 (199)
T 2bwj_A 12 CKIIFII-GGPGSGKGTQCEKLVEKY---G--FTHLSTGE 45 (199)
T ss_dssp SCEEEEE-ECTTSSHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHh---C--CeEEcHHH
Confidence 4577777 889999999999998877 3 35677763
No 285
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.41 E-value=0.22 Score=44.22 Aligned_cols=34 Identities=32% Similarity=0.425 Sum_probs=27.0
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+++|+++ |-.|+||||++..|+..+ | ...+|.|.
T Consensus 8 g~~i~l~-G~~GsGKSTl~~~l~~~~---g--~~~i~~d~ 41 (175)
T 1knq_A 8 HHIYVLM-GVSGSGKSAVASEVAHQL---H--AAFLDGDF 41 (175)
T ss_dssp SEEEEEE-CSTTSCHHHHHHHHHHHH---T--CEEEEGGG
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHhh---C--cEEEeCcc
Confidence 4677777 889999999999998776 4 35678775
No 286
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=91.33 E-value=0.69 Score=45.20 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=38.8
Q ss_pred CCCCEEEEcCCCCCC-------------hhhhhhhhhcCCCeEEEEeCCCc--chHHHHHHHHHHHHcCCCCEEEEEEec
Q 009574 284 GELDYLVIDMPPGTG-------------DIQLTLCQVVPLTAAVIVTTPQK--LAFIDVAKGVRMFSKLKVPCIAVVENM 348 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~-------------~~~~~~~~~~~~d~viiV~~p~~--~s~~~~~~~i~~l~~~~~~~~gvV~N~ 348 (532)
..++++|+|||+-.. ........+..+|.+++|+.+.. ........+++.+...+.++ -+|+|+
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~-i~v~NK 207 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRT-IGVITK 207 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSE-EEEEEC
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcE-EEEEcC
Confidence 357899999987432 01111222346788888776522 11122235666666667764 567799
Q ss_pred cccc
Q 009574 349 CHFD 352 (532)
Q Consensus 349 ~~~~ 352 (532)
++..
T Consensus 208 ~Dl~ 211 (315)
T 1jwy_B 208 LDLM 211 (315)
T ss_dssp TTSS
T ss_pred cccC
Confidence 7753
No 287
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.30 E-value=0.25 Score=45.99 Aligned_cols=36 Identities=31% Similarity=0.265 Sum_probs=30.8
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 214 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID 214 (532)
++.|+|. |-.|+||||++..|+..|...|++|.+..
T Consensus 6 g~~i~~e-G~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 6 GLFVTLE-GPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 3566666 88999999999999999999999997664
No 288
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.29 E-value=0.11 Score=47.74 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=28.4
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
++++|+++ |..|+||||++..|+..+. .+.++|.|..
T Consensus 20 ~~~~i~i~-G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 20 KTFIIGIS-GVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp CCEEEEEE-ESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 45688888 7789999999887765431 5788999864
No 289
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.23 E-value=0.55 Score=41.38 Aligned_cols=67 Identities=13% Similarity=0.066 Sum_probs=40.2
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~-~~i~~l~~~--~~~~~gvV~N~~~~~ 352 (532)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+. ..+..+... +.+ +-+|.|+++..
T Consensus 52 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 122 (186)
T 1mh1_A 52 PVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLR 122 (186)
T ss_dssp EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSC-EEEEEECHHHH
T ss_pred EEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCC-EEEEeEccccc
Confidence 4567899998643222222222446788888888754 4555554 455555543 455 56888997753
No 290
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=91.18 E-value=0.37 Score=44.13 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=38.9
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCEEEEEEeccccc
Q 009574 286 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFD 352 (532)
Q Consensus 286 yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~---~~~~~~gvV~N~~~~~ 352 (532)
+.+.|+|||+..............+|.+++|...+. .+...+...+..+.. .+.+ +-+|.|+++..
T Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 130 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAP-IVVCANKIDIK 130 (218)
T ss_dssp EEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSC-EEEEEECTTCC
T ss_pred EEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCc
Confidence 678999998732211111222445788888887654 344555555454443 2455 55888997753
No 291
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.08 E-value=0.24 Score=45.49 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=17.9
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHH
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAY 201 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~ 201 (532)
...|+|. |..|+||||+...|..
T Consensus 12 ~~~i~~~-G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 12 QPSIIIA-GPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CCEEEEE-CSTTSSHHHHHHHHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhc
Confidence 3467777 8999999999877653
No 292
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=91.06 E-value=1.3 Score=44.31 Aligned_cols=67 Identities=16% Similarity=0.101 Sum_probs=38.8
Q ss_pred CCCEEEEcCCCCCCh-------------hhhhhhhhcCCCeEEEEeCCCc--chHHHHHHHHHHHHcCCCCEEEEEEecc
Q 009574 285 ELDYLVIDMPPGTGD-------------IQLTLCQVVPLTAAVIVTTPQK--LAFIDVAKGVRMFSKLKVPCIAVVENMC 349 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~-------------~~~~~~~~~~~d~viiV~~p~~--~s~~~~~~~i~~l~~~~~~~~gvV~N~~ 349 (532)
..++.|+|||+-... ..+....+..++.+++++.+.. .......+.++.+...+.+++ +|+|++
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i-~V~nK~ 213 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTF-GVLTKI 213 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEE-EEEECG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEE-EEEeCC
Confidence 568999999873221 1222222446787888776532 222344455555555566654 667997
Q ss_pred ccc
Q 009574 350 HFD 352 (532)
Q Consensus 350 ~~~ 352 (532)
+..
T Consensus 214 Dl~ 216 (360)
T 3t34_A 214 DLM 216 (360)
T ss_dssp GGC
T ss_pred ccC
Confidence 754
No 293
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=91.05 E-value=0.63 Score=48.46 Aligned_cols=69 Identities=10% Similarity=0.068 Sum_probs=41.5
Q ss_pred CCCCEEEEcCCCC---------CChhh-h-hhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPG---------TGDIQ-L-TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~---------~~~~~-~-~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
+...+.|+|||+- ..... . ....+..+|.+++|+...........+.++.+.+.+.+ +-+|+|+++..
T Consensus 241 ~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~ 319 (456)
T 4dcu_A 241 NQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKA-VVIVVNKWDAV 319 (456)
T ss_dssp TTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGS
T ss_pred CCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCC-EEEEEEChhcC
Confidence 3446888898762 11111 1 11123456888888877654444555667777777766 45888998754
Q ss_pred C
Q 009574 353 A 353 (532)
Q Consensus 353 ~ 353 (532)
.
T Consensus 320 ~ 320 (456)
T 4dcu_A 320 D 320 (456)
T ss_dssp C
T ss_pred C
Confidence 3
No 294
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.02 E-value=0.11 Score=45.97 Aligned_cols=35 Identities=29% Similarity=0.350 Sum_probs=26.5
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
|+++|+++ |-.|+||||++..||..+ |. ..+|.|.
T Consensus 3 ~~~~i~l~-G~~GsGKSTl~~~La~~l---~~--~~id~d~ 37 (173)
T 1kag_A 3 EKRNIFLV-GPMGAGKSTIGRQLAQQL---NM--EFYDSDQ 37 (173)
T ss_dssp CCCCEEEE-CCTTSCHHHHHHHHHHHT---TC--EEEEHHH
T ss_pred CCCeEEEE-CCCCCCHHHHHHHHHHHh---CC--CEEeccH
Confidence 45678888 889999999998887765 32 4677763
No 295
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.94 E-value=0.22 Score=46.06 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=29.4
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 214 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID 214 (532)
|++-|+|= |--|+||||.+..|+..|. +|++|.+.-
T Consensus 1 M~kFI~~E-G~dGsGKsTq~~~L~~~L~-~~~~v~~~~ 36 (205)
T 4hlc_A 1 MSAFITFE-GPEGSGKTTVINEVYHRLV-KDYDVIMTR 36 (205)
T ss_dssp -CEEEEEE-CCTTSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CCCEEEEE-CCCCCcHHHHHHHHHHHHH-CCCCEEEee
Confidence 56778877 7789999999999999996 588887753
No 296
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.93 E-value=0.11 Score=47.33 Aligned_cols=33 Identities=33% Similarity=0.473 Sum_probs=26.2
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
++|+++ |-.|+||||++..||..| | +-++|.|.
T Consensus 3 ~~i~i~-G~~GsGKst~~~~la~~l---g--~~~~d~d~ 35 (208)
T 3ake_A 3 GIVTID-GPSASGKSSVARRVAAAL---G--VPYLSSGL 35 (208)
T ss_dssp SEEEEE-CSTTSSHHHHHHHHHHHH---T--CCEEEHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhc---C--Cceeccch
Confidence 477777 889999999999998876 3 45678774
No 297
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.85 E-value=0.17 Score=46.22 Aligned_cols=36 Identities=31% Similarity=0.270 Sum_probs=26.9
Q ss_pred cCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 175 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 175 ~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
..++++|.++ |-.|+||||+|..||..+ |.. +||+|
T Consensus 17 ~~~~~~I~l~-G~~GsGKST~a~~La~~l---~~~--~i~~d 52 (201)
T 2cdn_A 17 RGSHMRVLLL-GPPGAGKGTQAVKLAEKL---GIP--QISTG 52 (201)
T ss_dssp CCSCCEEEEE-CCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CCCCeEEEEE-CCCCCCHHHHHHHHHHHh---CCc--EEehh
Confidence 3444567777 889999999999998877 444 56765
No 298
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.84 E-value=0.16 Score=53.67 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=33.3
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHH-C-CCcEEEEEcCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG-M-GARVGIFDADV 217 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~-~-G~rVllID~D~ 217 (532)
.+.+|.++ |-.|+||||++..||..|.. . |+.+-++|.|.
T Consensus 394 ~~~~I~l~-GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 394 QGFSIVLG-NSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CCEEEEEC-TTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cceEEEec-ccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 34566666 88999999999999999987 5 47788999987
No 299
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.76 E-value=1.7 Score=38.38 Aligned_cols=68 Identities=9% Similarity=-0.006 Sum_probs=39.7
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHH-HHHHHHHHcC--CCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL--KVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~-~~~i~~l~~~--~~~~~gvV~N~~~~~ 352 (532)
..+.+.|+|+|+...........+..+|.+++|...+. .++..+ ...++.+... +.+ +-+|.|+++..
T Consensus 53 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~ 124 (184)
T 1m7b_A 53 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLR 124 (184)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGG
T ss_pred EEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEcchhh
Confidence 34578999998742211122222446788888877654 455555 3444555442 344 56888998754
No 300
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=90.75 E-value=0.21 Score=53.23 Aligned_cols=67 Identities=12% Similarity=0.148 Sum_probs=46.7
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
...+.|+|||+...........+..+|.+++|+..+..........+..+...+.+ +-+++|+++..
T Consensus 51 g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vP-iIVViNKiDl~ 117 (537)
T 3izy_P 51 GEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVP-IVLAINKCDKA 117 (537)
T ss_dssp SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCC-EEECCBSGGGT
T ss_pred CCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCc-EEEEEeccccc
Confidence 34578899987433222222234457899999988776666777788888888888 56888998754
No 301
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.73 E-value=0.22 Score=44.13 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=21.7
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHH
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAG 205 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~ 205 (532)
+.+.++ |..|+||||++..+|..+..
T Consensus 44 ~~vll~-G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 44 NNPILL-GDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CEEEEE-SCGGGCHHHHHHHHHHHHHT
T ss_pred CceEEE-CCCCCCHHHHHHHHHHHHHh
Confidence 345555 88999999999999999876
No 302
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.69 E-value=0.68 Score=40.67 Aligned_cols=67 Identities=12% Similarity=0.100 Sum_probs=38.8
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~-~~i~~l~~~--~~~~~gvV~N~~~~~ 352 (532)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+. ..++.+... +.+ +-+|.|+++..
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 125 (182)
T 3bwd_D 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IVLVGTKLDLR 125 (182)
T ss_dssp ---CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHH
T ss_pred EEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhhh
Confidence 4567799998743322222222445789999888754 4566655 455555542 455 56888997753
No 303
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.65 E-value=0.53 Score=42.82 Aligned_cols=68 Identities=13% Similarity=0.027 Sum_probs=41.1
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~-~~i~~l~~~--~~~~~gvV~N~~~~~ 352 (532)
..+.+.|+|+|+...........+..+|.+++|...+. .++..+. ..+..+... +.+ +-+|.|+++..
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 147 (204)
T 4gzl_A 76 KPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLR 147 (204)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECHHHH
T ss_pred EEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhhc
Confidence 45567799998743222222223456788988887654 4555554 455555543 455 56788997754
No 304
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=90.63 E-value=0.83 Score=46.80 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=42.1
Q ss_pred CCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch-HHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 286 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-FIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 286 yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s-~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
+.+.|+|||+-..........+..+|.+++|+..+... .......+..++..+.+.+-+++|+++..
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~ 148 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLV 148 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSS
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCC
Confidence 67999999873221112222234569999998876432 34444555566667766577889997754
No 305
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.54 E-value=0.26 Score=46.25 Aligned_cols=41 Identities=22% Similarity=0.159 Sum_probs=33.9
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHH-CCCcEEEEEcCCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVY 218 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~-~G~rVllID~D~~ 218 (532)
.++.|+|. |-.|+||||++..|+..|.. .|++|.++--.|.
T Consensus 20 ~~~~i~~~-G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~ 61 (223)
T 3ld9_A 20 GSMFITFE-GIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG 61 (223)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC
Confidence 35677776 88999999999999999998 9999888555554
No 306
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.48 E-value=0.34 Score=45.64 Aligned_cols=40 Identities=13% Similarity=-0.040 Sum_probs=33.1
Q ss_pred cCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 175 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 175 ~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
..|+++..++ |.-|.||||-+..++..+..+|+||+++-.
T Consensus 16 ~~~g~l~v~~-G~MgsGKTT~lL~~~~r~~~~g~kvli~kp 55 (234)
T 2orv_A 16 KTRGQIQVIL-GPMFSGKSTELMRRVRRFQIAQYKCLVIKY 55 (234)
T ss_dssp --CCEEEEEE-CCTTSCHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred CCceEEEEEE-CCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Confidence 3456666665 888999999999999999999999999983
No 307
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.47 E-value=0.16 Score=48.50 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=28.7
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
+++|.++ |-.|+||||++..|+..+ +..+.++|.|...
T Consensus 32 ~~~i~l~-G~~GsGKSTla~~L~~~l---~~~~~~~~~D~~r 69 (253)
T 2p5t_B 32 PIAILLG-GQSGAGKTTIHRIKQKEF---QGNIVIIDGDSFR 69 (253)
T ss_dssp CEEEEEE-SCGGGTTHHHHHHHHHHT---TTCCEEECGGGGG
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHhc---CCCcEEEecHHHH
Confidence 3456655 899999999999998765 3456788988654
No 308
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=90.42 E-value=0.38 Score=44.30 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=41.0
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC--CCCEEEEEEecccccC
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL--KVPCIAVVENMCHFDA 353 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~--~~~~~gvV~N~~~~~~ 353 (532)
..+.+.|+|||+...........+..+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++...
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 62 GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKD 133 (221)
T ss_dssp EEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCC-EEEEEECTTSSS
T ss_pred EEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCcccc
Confidence 45678999998732111111122346788888887654 3555555555555442 455 558889987543
No 309
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.41 E-value=0.2 Score=48.64 Aligned_cols=36 Identities=33% Similarity=0.447 Sum_probs=27.5
Q ss_pred cCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 175 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 175 ~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
.+.+++|+|+ |-.|+||||+|..|+ . .|.. +||+|.
T Consensus 72 ~~~~~iI~I~-G~~GSGKSTva~~La-~---lg~~--~id~D~ 107 (281)
T 2f6r_A 72 PSGLYVLGLT-GISGSGKSSVAQRLK-N---LGAY--IIDSDH 107 (281)
T ss_dssp CTTCEEEEEE-ECTTSCHHHHHHHHH-H---HTCE--EEEHHH
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHH-H---CCCc--EEehhH
Confidence 3446788888 889999999999998 3 3654 578875
No 310
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=90.35 E-value=0.37 Score=47.35 Aligned_cols=68 Identities=10% Similarity=0.003 Sum_probs=39.5
Q ss_pred CCCCEEEEcCCCCCCh-----hhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC-----CCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGD-----IQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-----KVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~-----~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~-----~~~~~gvV~N~~~~~ 352 (532)
+.+.+.|+|||+.... .......+..+|.+++|...+. .+...+....+.+... +.+ +-+|.|+++..
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~p-iilv~NK~Dl~ 128 (307)
T 3r7w_A 50 GNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAK-IFVLLHKMDLV 128 (307)
T ss_dssp TTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGGS
T ss_pred CceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCe-EEEEEeccccc
Confidence 4567899999764221 0111112346789999987764 4556665443333321 444 66888997754
No 311
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=90.29 E-value=0.22 Score=44.88 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=26.1
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+++|.++ |-.|+||||++..||..+ .| .-.+|+|-
T Consensus 10 ~~~I~l~-G~~GsGKSTv~~~La~~l--~g--~~~id~d~ 44 (184)
T 1y63_A 10 GINILIT-GTPGTGKTSMAEMIAAEL--DG--FQHLEVGK 44 (184)
T ss_dssp SCEEEEE-CSTTSSHHHHHHHHHHHS--TT--EEEEEHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhc--CC--CEEeeHHH
Confidence 3567777 889999999999888763 24 45678874
No 312
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.23 E-value=0.3 Score=45.79 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=32.0
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHH-HCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA-~~G~rVllID~D~ 217 (532)
+.++++. |..|+||||++..++.... ..+.++++++.+.
T Consensus 30 G~~~~l~-GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 30 GTTVLLT-GGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp TCEEEEE-CCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 4688887 8999999999999996555 6677888888764
No 313
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=90.21 E-value=1.8 Score=39.89 Aligned_cols=68 Identities=10% Similarity=-0.011 Sum_probs=38.2
Q ss_pred CCCCEEEEcCCCCCC----hh----hhhh-hhhcCCCeEEEEeCCCcc---hHHHHHHHHHHHHcC--CCCEEEEEEecc
Q 009574 284 GELDYLVIDMPPGTG----DI----QLTL-CQVVPLTAAVIVTTPQKL---AFIDVAKGVRMFSKL--KVPCIAVVENMC 349 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~----~~----~~~~-~~~~~~d~viiV~~p~~~---s~~~~~~~i~~l~~~--~~~~~gvV~N~~ 349 (532)
..+.+.|+|||+... .. .... .....+|.+++|...+.. ........+..+... +.+ +-+|.|++
T Consensus 74 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~p-iilv~nK~ 152 (228)
T 2qu8_A 74 KLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKS-IVIGFNKI 152 (228)
T ss_dssp TTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCC-EEEEEECG
T ss_pred CCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCc-EEEEEeCc
Confidence 346789999987521 10 0011 112345778888776542 223334556666654 555 56888998
Q ss_pred ccc
Q 009574 350 HFD 352 (532)
Q Consensus 350 ~~~ 352 (532)
+..
T Consensus 153 Dl~ 155 (228)
T 2qu8_A 153 DKC 155 (228)
T ss_dssp GGC
T ss_pred ccC
Confidence 754
No 314
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.08 E-value=0.23 Score=45.42 Aligned_cols=34 Identities=32% Similarity=0.408 Sum_probs=26.9
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
.+|+++ |-.|+||||++..||..+ | .-+||+|-.
T Consensus 13 ~iIglt-G~~GSGKSTva~~L~~~l---g--~~vid~D~~ 46 (192)
T 2grj_A 13 MVIGVT-GKIGTGKSTVCEILKNKY---G--AHVVNVDRI 46 (192)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHH---C--CEEEEHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhc---C--CEEEECcHH
Confidence 477888 789999999999888764 5 457898864
No 315
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.04 E-value=0.17 Score=44.35 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=21.1
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEE
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG 211 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVl 211 (532)
+|++. |-.|+||||+|..| .+.|..++
T Consensus 3 ~I~l~-G~~GsGKsT~a~~L----~~~g~~~i 29 (179)
T 3lw7_A 3 VILIT-GMPGSGKSEFAKLL----KERGAKVI 29 (179)
T ss_dssp EEEEE-CCTTSCHHHHHHHH----HHTTCEEE
T ss_pred EEEEE-CCCCCCHHHHHHHH----HHCCCcEE
Confidence 56666 99999999999988 56677654
No 316
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.02 E-value=0.19 Score=49.80 Aligned_cols=40 Identities=15% Similarity=0.207 Sum_probs=31.4
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHH------------HCC----CcEEEEEcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLA------------GMG----ARVGIFDADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA------------~~G----~rVllID~D~~ 218 (532)
+.++.|+ +..|+||||+|.++|...+ ..| .+|+.||++..
T Consensus 98 g~i~~i~-G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 98 QSVTEFA-GVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp TEEEEEE-ESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 3466666 8899999999999998743 235 79999998863
No 317
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=89.86 E-value=2.1 Score=38.87 Aligned_cols=69 Identities=9% Similarity=-0.033 Sum_probs=39.9
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHH-HHHHHHHHcC-CCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL-KVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~-~~~i~~l~~~-~~~~~gvV~N~~~~~ 352 (532)
..+.+.|+|+|+...........+..+|.+++|...+. .++..+ ...++.+... ....+-+|.|+++..
T Consensus 74 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 74 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 145 (205)
T ss_dssp SEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred EEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhc
Confidence 34678999998742221222222446788888887654 455555 3444555442 222366888998754
No 318
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=89.86 E-value=0.29 Score=44.68 Aligned_cols=34 Identities=32% Similarity=0.377 Sum_probs=27.1
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+++|+++ |-.|+||||++..|+..+ |. ..+|.|.
T Consensus 29 g~~i~l~-G~~GsGKSTl~~~L~~~~---g~--~~i~~d~ 62 (200)
T 4eun_A 29 TRHVVVM-GVSGSGKTTIAHGVADET---GL--EFAEADA 62 (200)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHH---CC--EEEEGGG
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHhh---CC--eEEcccc
Confidence 3577777 899999999999999877 53 5677765
No 319
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.79 E-value=2.3 Score=42.70 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=28.2
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHC-CCcEEEEE
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFD 214 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~-G~rVllID 214 (532)
..+|+|+ |..|+||||+...++..+... |.+++.++
T Consensus 123 ~g~i~I~-GptGSGKTTlL~~l~g~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 123 RGLVLVT-GPTGSGKSTTLAAMLDYLNNTKYHHILTIE 159 (356)
T ss_dssp SEEEEEE-CSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence 3477777 899999999999999888764 66666554
No 320
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.65 E-value=0.19 Score=46.59 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=25.2
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
|+.|.|. |-.|+||||+|..||..| |. -.||+|
T Consensus 5 ~~~I~l~-G~~GsGKsT~a~~La~~l---~~--~~i~~d 37 (217)
T 3be4_A 5 KHNLILI-GAPGSGKGTQCEFIKKEY---GL--AHLSTG 37 (217)
T ss_dssp CCEEEEE-ECTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHh---Cc--eEEehh
Confidence 4466766 889999999999999887 44 356664
No 321
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.61 E-value=0.34 Score=45.85 Aligned_cols=39 Identities=28% Similarity=0.271 Sum_probs=30.6
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHC-----CCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-----GARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~-----G~rVllID~D~ 217 (532)
+.+|+++ |..|+||||++..|+..+... +.++.+++.|.
T Consensus 25 g~iigI~-G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~ 68 (245)
T 2jeo_A 25 PFLIGVS-GGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR 68 (245)
T ss_dssp SEEEEEE-CSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc
Confidence 4588998 889999999999998877321 34677888874
No 322
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=89.51 E-value=2.6 Score=38.74 Aligned_cols=67 Identities=18% Similarity=0.173 Sum_probs=37.1
Q ss_pred CCCEEEEcCCCCCC-hhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcC----CCCEEEEEEeccccc
Q 009574 285 ELDYLVIDMPPGTG-DIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 352 (532)
Q Consensus 285 ~yD~VIIDtpp~~~-~~~~~~~~~~~~d~viiV~~p-~~~s~~~~~~~i~~l~~~----~~~~~gvV~N~~~~~ 352 (532)
.+.++++|++...+ ...+.......++.+++|..- +..++..+......+... +.+ +-+|.|+++..
T Consensus 86 ~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~ 158 (211)
T 2g3y_A 86 SATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDLV 158 (211)
T ss_dssp EEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSC-EEEEEECTTCG
T ss_pred eeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEChHHh
Confidence 34567888865322 111111112235677766554 455777776666656543 455 56888998754
No 323
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.23 E-value=0.19 Score=44.09 Aligned_cols=32 Identities=28% Similarity=0.234 Sum_probs=24.7
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+|.++ |-.|+||||+|..||..| |.. ++|+|.
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~l---~~~--~i~~d~ 33 (168)
T 2pt5_A 2 RIYLI-GFMCSGKSTVGSLLSRSL---NIP--FYDVDE 33 (168)
T ss_dssp EEEEE-SCTTSCHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHh---CCC--EEECcH
Confidence 46666 889999999999998877 443 567774
No 324
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.20 E-value=0.27 Score=46.06 Aligned_cols=37 Identities=22% Similarity=0.109 Sum_probs=26.9
Q ss_pred ccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 174 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 174 ~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
....|+.|.|. |..|+||||+|..||..| | ...||+|
T Consensus 12 ~~~~~~~I~l~-G~~GsGKsT~a~~La~~l---~--~~~i~~d 48 (233)
T 1ak2_A 12 ESPKGVRAVLL-GPPGAGKGTQAPKLAKNF---C--VCHLATG 48 (233)
T ss_dssp --CCCCEEEEE-CCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred CCCCCeEEEEE-CCCCCCHHHHHHHHHHHh---C--CceecHH
Confidence 44445677777 889999999999999887 3 3456764
No 325
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=89.19 E-value=0.15 Score=50.66 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=28.3
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
+++.+ .|..|+||||+|.++|.. .|.+|+.++++
T Consensus 124 sviLI-~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~ 157 (331)
T 2vhj_A 124 GMVIV-TGKGNSGKTPLVHALGEA---LGGKDKYATVR 157 (331)
T ss_dssp EEEEE-ECSCSSSHHHHHHHHHHH---HHTTSCCEEEE
T ss_pred cEEEE-EcCCCCCHHHHHHHHHHh---CCCCEEEEEec
Confidence 45554 599999999999999987 57899999983
No 326
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=89.14 E-value=0.7 Score=47.80 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=47.5
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
..+.+.|+|||+-..........+..+|.+++|+...........+.+..+...+.+.+-+++|+++..
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLN 170 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTT
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCC
Confidence 456799999987433222223335578999999988765445566666677777877677889997753
No 327
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=89.12 E-value=0.23 Score=48.43 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=27.0
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 219 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~ 219 (532)
.+.+.+|-.|+||||++..|+..+. .....||.|...
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~~R 70 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTFK 70 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechHhH
Confidence 4555669999999999999977552 245778886543
No 328
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=89.03 E-value=0.47 Score=45.36 Aligned_cols=21 Identities=48% Similarity=0.540 Sum_probs=17.1
Q ss_pred eEEEEEeCcCCCcHHHHHHHHH
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLA 200 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA 200 (532)
..|++. |..|+||||+.-.|.
T Consensus 37 ~~I~lv-G~~g~GKSSLin~l~ 57 (262)
T 3def_A 37 MTVLVL-GKGGVGKSSTVNSLI 57 (262)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHH
T ss_pred cEEEEE-CCCCCCHHHHHHHHh
Confidence 356666 999999999988775
No 329
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.99 E-value=0.38 Score=45.17 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=29.2
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 213 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllI 213 (532)
+++.|+|. |-.|+||||++..|+..|.. |.+|+..
T Consensus 25 ~g~~i~i~-G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFE-GPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CCEEEEEE-CCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CCeEEEEE-cCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 45677777 88999999999999999988 8888654
No 330
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.96 E-value=0.34 Score=58.21 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=35.4
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
+.+|.++ +..|+||||+|.++|..+++.|.+|+.+++...
T Consensus 732 G~lVlI~-G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees 771 (1706)
T 3cmw_A 732 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 771 (1706)
T ss_dssp TSEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC
T ss_pred CceEEEE-CCCCCCcHHHHHHHHHHHHHcCCCeEEEeccch
Confidence 4466666 999999999999999999999999999999864
No 331
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=88.92 E-value=0.29 Score=45.35 Aligned_cols=33 Identities=27% Similarity=0.218 Sum_probs=25.5
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
++.|.|. |-.|+||||++..||..| |. ..||+|
T Consensus 4 ~~~I~l~-G~~GsGKsT~a~~La~~l---~~--~~i~~d 36 (220)
T 1aky_A 4 SIRMVLI-GPPGAGKGTQAPNLQERF---HA--AHLATG 36 (220)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHc---Cc--eEEehh
Confidence 4567777 889999999999999877 43 456764
No 332
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.90 E-value=2.9 Score=42.20 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=30.3
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHC-CCcEEEEEc
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDA 215 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~-G~rVllID~ 215 (532)
.+.+++|+ |..|+||||+...|+..+... ..+|+.++-
T Consensus 135 ~g~~i~iv-G~~GsGKTTll~~l~~~~~~~~~g~I~~~e~ 173 (372)
T 2ewv_A 135 KMGLILVT-GPTGSGKSTTIASMIDYINQTKSYHIITIED 173 (372)
T ss_dssp SSEEEEEE-CSSSSSHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHhhcCcCCCcEEEEecc
Confidence 34578887 889999999999999988764 457777763
No 333
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=88.89 E-value=0.28 Score=44.08 Aligned_cols=35 Identities=40% Similarity=0.442 Sum_probs=25.1
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
+.+|++. |..|+||||++..||.. .+...+.+|.|
T Consensus 9 g~~i~l~-G~~GsGKSTl~~~La~~---~~~g~i~i~~d 43 (191)
T 1zp6_A 9 GNILLLS-GHPGSGKSTIAEALANL---PGVPKVHFHSD 43 (191)
T ss_dssp TEEEEEE-ECTTSCHHHHHHHHHTC---SSSCEEEECTT
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHhc---cCCCeEEEccc
Confidence 3577777 89999999999888764 33445566655
No 334
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.85 E-value=0.47 Score=44.10 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=29.1
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCC-cEEEE
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGA-RVGIF 213 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~-rVllI 213 (532)
++.|+|. |-.|+||||.+..|+..|...|+ .|.+.
T Consensus 3 g~~i~~e-G~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 3 SKYIVIE-GLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CCEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 3567776 88899999999999999999998 66544
No 335
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=88.78 E-value=0.29 Score=43.64 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=24.1
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
+.|.++ |-.|+||||++..||..+ |. ..+|+|
T Consensus 12 ~~i~i~-G~~GsGKst~~~~l~~~~---~~--~~~~~d 43 (180)
T 3iij_A 12 PNILLT-GTPGVGKTTLGKELASKS---GL--KYINVG 43 (180)
T ss_dssp CCEEEE-CSTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CeEEEE-eCCCCCHHHHHHHHHHHh---CC--eEEEHH
Confidence 456666 899999999999998776 43 456665
No 336
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=88.57 E-value=0.51 Score=43.17 Aligned_cols=33 Identities=30% Similarity=0.247 Sum_probs=28.8
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 214 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID 214 (532)
|+|= |--|+||||.+..|+..|..+|++|.+..
T Consensus 3 I~~E-G~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFE-GIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4554 77899999999999999999999998775
No 337
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=88.56 E-value=0.29 Score=44.04 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=26.2
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+++|++. |-.|+||||++..||..+ |. ..+|.|.
T Consensus 9 ~~~I~l~-G~~GsGKsT~~~~La~~l---~~--~~i~~d~ 42 (196)
T 2c95_A 9 TNIIFVV-GGPGSGKGTQCEKIVQKY---GY--THLSTGD 42 (196)
T ss_dssp SCEEEEE-ECTTSSHHHHHHHHHHHH---CC--EEEEHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHh---CC--eEEcHHH
Confidence 4577777 889999999999998877 44 3667763
No 338
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=88.54 E-value=0.47 Score=46.77 Aligned_cols=36 Identities=22% Similarity=0.151 Sum_probs=31.2
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
.+.++ |..|+||||++..+|..+...|.+++.+++.
T Consensus 39 ~lll~-G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 39 PIFIY-GSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp SEEEE-CSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred eEEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 45566 8899999999999999999888999998864
No 339
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=88.28 E-value=0.34 Score=43.43 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=24.7
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
++|++. |-.|+||||+|..||..+ |. ..||.|
T Consensus 4 ~~I~l~-G~~GsGKsT~a~~L~~~~---~~--~~i~~d 35 (196)
T 1tev_A 4 LVVFVL-GGPGAGKGTQCARIVEKY---GY--THLSAG 35 (196)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---CC--eEEeHH
Confidence 466666 899999999999998766 44 357766
No 340
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.26 E-value=0.36 Score=43.09 Aligned_cols=33 Identities=30% Similarity=0.297 Sum_probs=25.2
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
+++|.++ |-.|+||||++..||..+ |. ..+|+|
T Consensus 4 g~~I~l~-G~~GsGKST~~~~La~~l---~~--~~i~~d 36 (186)
T 3cm0_A 4 GQAVIFL-GPPGAGKGTQASRLAQEL---GF--KKLSTG 36 (186)
T ss_dssp EEEEEEE-CCTTSCHHHHHHHHHHHH---TC--EEECHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHh---CC--eEecHH
Confidence 3467766 889999999999998876 43 456765
No 341
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=88.05 E-value=0.48 Score=50.99 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=29.8
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 214 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID 214 (532)
+++.| .|-.|+||||++..++..+...|++|+++-
T Consensus 205 ~~~~I-~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 205 RLVVL-TGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp SEEEE-ECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEE-EcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 34444 489999999999999999999999999863
No 342
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=87.96 E-value=0.43 Score=47.93 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=30.4
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHC--------CCcEEEEEcC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGM--------GARVGIFDAD 216 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~--------G~rVllID~D 216 (532)
+.+.++ |.+|+||||++..++..+.+. +..++.+++.
T Consensus 46 ~~vll~-G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 46 FSNLFL-GLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CcEEEE-CCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 456666 899999999999999998765 7788888764
No 343
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.87 E-value=0.42 Score=44.94 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=27.3
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHC----CCcEEEEE
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM----GARVGIFD 214 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~----G~rVllID 214 (532)
++.|+|. |-.|+||||++..|+..|... |++|.+.-
T Consensus 25 g~~I~~e-G~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 25 GKFITFE-GIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CCEEEEE-CCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 3566666 889999999999999999988 99997653
No 344
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=87.84 E-value=1.6 Score=43.47 Aligned_cols=35 Identities=20% Similarity=0.433 Sum_probs=27.5
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
.++|.|+ |-.|+||||++..||..+ ..-+||+|-.
T Consensus 40 ~~lIvI~-GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLM-GATGTGKSRLSIDLAAHF-----PLEVINSDKM 74 (339)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHTTS-----CEEEEECCSS
T ss_pred CceEEEE-CCCCCCHHHHHHHHHHHC-----CCcEEccccc
Confidence 3566666 889999999999998755 3568999975
No 345
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=87.81 E-value=1.4 Score=45.92 Aligned_cols=69 Identities=16% Similarity=0.081 Sum_probs=47.9
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHH-------HHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI-------DVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~~-------~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
..+.+.|+|||+-..........+..+|.+++|+........ ...+.+..+...+++.+-+++|+++..
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSV 158 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGG
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccc
Confidence 567899999987543333333345578999999988764333 455566666777887677889998754
No 346
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=87.77 E-value=0.59 Score=45.46 Aligned_cols=39 Identities=28% Similarity=0.242 Sum_probs=32.8
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
..+.++ |..|+||||+|..+|..+...+..+..+|+...
T Consensus 48 ~~~ll~-G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 48 GSFLFL-GPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp EEEEEE-SCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred eEEEEE-CCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 356666 889999999999999999887778899988653
No 347
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=87.68 E-value=0.2 Score=44.62 Aligned_cols=30 Identities=30% Similarity=0.254 Sum_probs=18.7
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEE
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG 211 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVl 211 (532)
|++|.++ |-.|+||||+|..||..| |..++
T Consensus 5 ~~~I~l~-G~~GsGKST~a~~La~~l---~~~~i 34 (183)
T 2vli_A 5 SPIIWIN-GPFGVGKTHTAHTLHERL---PGSFV 34 (183)
T ss_dssp CCEEEEE-CCC----CHHHHHHHHHS---TTCEE
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHhc---CCCEE
Confidence 4567666 889999999999887655 55544
No 348
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=87.63 E-value=0.26 Score=42.55 Aligned_cols=35 Identities=17% Similarity=0.002 Sum_probs=27.5
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
|.++ |..|+|||++|..++....+.+...+ +++..
T Consensus 27 vll~-G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~ 61 (145)
T 3n70_A 27 VWLY-GAPGTGRMTGARYLHQFGRNAQGEFV-YRELT 61 (145)
T ss_dssp EEEE-SSTTSSHHHHHHHHHHSSTTTTSCCE-EEECC
T ss_pred EEEE-CCCCCCHHHHHHHHHHhCCccCCCEE-EECCC
Confidence 4455 89999999999999887777677776 77653
No 349
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=87.61 E-value=0.51 Score=44.59 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=29.5
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCc-EEEE
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR-VGIF 213 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~r-VllI 213 (532)
++.|+|. |-.|+||||++..|+..|...|++ |.+.
T Consensus 27 ~~~i~~e-G~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIE-GLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCEEEEE-ESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 3567776 788999999999999999999999 5554
No 350
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=87.58 E-value=0.45 Score=43.93 Aligned_cols=39 Identities=26% Similarity=0.236 Sum_probs=31.0
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHH------CCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~------~G~rVllID~D~ 217 (532)
+.++++. |..|+||||++..|+..+.. .+.+++.++...
T Consensus 25 G~~~~l~-G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 25 QAITEVF-GEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 4578888 89999999999999987654 355788888754
No 351
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.45 E-value=0.37 Score=46.86 Aligned_cols=35 Identities=26% Similarity=0.149 Sum_probs=24.9
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+++|.+. |-.|+||||+|..|+..+ .| ...||.|.
T Consensus 2 ~~~I~l~-G~~GsGKST~a~~L~~~~--~~--~~~i~~D~ 36 (301)
T 1ltq_A 2 KKIILTI-GCPGSGKSTWAREFIAKN--PG--FYNINRDD 36 (301)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHS--TT--EEEECHHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHhC--CC--cEEecccH
Confidence 3456555 999999999999888732 23 45677763
No 352
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=87.30 E-value=0.43 Score=44.12 Aligned_cols=33 Identities=21% Similarity=0.404 Sum_probs=25.2
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
.+|+++ |..|+||||++..||..+ | .-.+|.|-
T Consensus 6 ~~i~i~-G~~GsGKSTl~~~L~~~~---g--~~~~d~g~ 38 (227)
T 1cke_A 6 PVITID-GPSGAGKGTLCKAMAEAL---Q--WHLLDSGA 38 (227)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---C--CCcccCcc
Confidence 578888 889999999999888765 3 34567653
No 353
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=87.23 E-value=0.76 Score=45.31 Aligned_cols=40 Identities=35% Similarity=0.356 Sum_probs=32.8
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHC-C-CcEEEEEcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-G-ARVGIFDADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~-G-~rVllID~D~~ 218 (532)
+.+|+|. |..|+||||++-.|+..+... | .+|.+|-.|..
T Consensus 90 g~ivgI~-G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 90 PFIIGVA-GSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp CEEEEEE-CCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CEEEEEE-CCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 4688888 899999999999999988753 4 57888888754
No 354
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=87.06 E-value=0.39 Score=49.19 Aligned_cols=39 Identities=21% Similarity=0.098 Sum_probs=31.8
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHH------CCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~------~G~rVllID~D~ 217 (532)
+.++.|+ |..|+||||++.+|+..... .+.+|+.||...
T Consensus 178 Gei~~I~-G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 178 GSITELF-GEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcEEEEE-cCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 4577777 89999999999999877654 467899999875
No 355
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=86.98 E-value=0.49 Score=46.16 Aligned_cols=33 Identities=21% Similarity=0.157 Sum_probs=27.1
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
+.+.++ |-.|+|||++|..+|..+ |.+++.+++
T Consensus 37 ~~lLl~-GppGtGKT~la~aiA~~l---~~~~i~v~~ 69 (293)
T 3t15_A 37 LILGIW-GGKGQGKSFQCELVFRKM---GINPIMMSA 69 (293)
T ss_dssp SEEEEE-ECTTSCHHHHHHHHHHHH---TCCCEEEEH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEEeH
Confidence 456666 889999999999999888 677777775
No 356
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=86.93 E-value=0.38 Score=49.86 Aligned_cols=45 Identities=9% Similarity=-0.046 Sum_probs=28.6
Q ss_pred hcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCEEEEEEecccccC
Q 009574 307 VVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 353 (532)
Q Consensus 307 ~~~~d~viiV~~p~~~-s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~~ 353 (532)
...+|.+++|...+.. +..+ .+.+..+...+.+ +-+|+|+++...
T Consensus 255 ~~~ad~~llv~D~~~~~s~~~-~~~~~~~~~~~~~-iiiv~NK~Dl~~ 300 (436)
T 2hjg_A 255 IDRSEVVAVVLDGEEGIIEQD-KRIAGYAHEAGKA-VVIVVNKWDAVD 300 (436)
T ss_dssp HHHCSEEEEEEETTTCCCHHH-HHHHHHHHHTTCE-EEEEEECGGGSC
T ss_pred HHhCCEEEEEEcCCcCCcHHH-HHHHHHHHHcCCc-EEEEEECccCCC
Confidence 3457888888776553 3333 3456666666655 568889987543
No 357
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=86.92 E-value=0.5 Score=43.50 Aligned_cols=29 Identities=24% Similarity=0.095 Sum_probs=22.7
Q ss_pred ccCcceEEEEEeCcCCCcHHHHHHHHHHHH
Q 009574 174 LQKISNIVAVSSCKGGVGKSTVAVNLAYTL 203 (532)
Q Consensus 174 ~~~~~kiIav~s~KGGvGKTTlA~nLA~~L 203 (532)
...++++|+|+ ||.|+||+|+|--+...+
T Consensus 7 ~~~~~~II~it-Gk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 7 GGAPRLVLLFS-GKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp BCCCSEEEEEE-ECTTSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEE-CCCCCChHHHHHHHHHHc
Confidence 34456788888 999999999998776544
No 358
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=86.90 E-value=0.41 Score=43.02 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=24.6
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
|+.+|+++ |..|+||||++..|+. ..+. ...+|.|.
T Consensus 1 mg~ii~l~-G~~GaGKSTl~~~L~~---~~~g-~~~i~~d~ 36 (189)
T 2bdt_A 1 MKKLYIIT-GPAGVGKSTTCKRLAA---QLDN-SAYIEGDI 36 (189)
T ss_dssp CEEEEEEE-CSTTSSHHHHHHHHHH---HSSS-EEEEEHHH
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHhc---ccCC-eEEEcccc
Confidence 34567776 8899999999999975 2222 24556553
No 359
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=86.89 E-value=0.82 Score=43.25 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=40.8
Q ss_pred cceEEEEEeCc-CCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCC
Q 009574 177 ISNIVAVSSCK-GGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP 223 (532)
Q Consensus 177 ~~kiIav~s~K-GGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~ 223 (532)
+||-|.|+++- .|.||-.+|+.|+..|..+|+||..+-+||+-+--+
T Consensus 22 ~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~~KiDPYlNvD~ 69 (294)
T 2c5m_A 22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDA 69 (294)
T ss_dssp CCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEECCEEECBCCCCC
T ss_pred ceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEEEecCCceeecC
Confidence 46888888775 889999999999999999999999999999865433
No 360
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=86.86 E-value=0.85 Score=41.66 Aligned_cols=43 Identities=14% Similarity=-0.004 Sum_probs=33.2
Q ss_pred cccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 173 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 173 ~~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
....|+++..++ |.-|.||||-....+..+..+|++|+++-..
T Consensus 15 ~~~~~g~l~fiy-G~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 15 GSKTRGQIQVIL-GPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp ----CCEEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred CCCCceEEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 445667766666 8889999999999999999999999999743
No 361
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=86.68 E-value=0.36 Score=44.73 Aligned_cols=25 Identities=20% Similarity=0.085 Sum_probs=21.0
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHH
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTL 203 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~L 203 (532)
|+.|.|. |-.|+||||++..||..|
T Consensus 5 ~~~I~l~-G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMIS-GAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEE-ESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 4567776 789999999999999877
No 362
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.63 E-value=0.48 Score=47.37 Aligned_cols=38 Identities=16% Similarity=0.105 Sum_probs=31.0
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHC---CCcEEEEEcC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM---GARVGIFDAD 216 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~---G~rVllID~D 216 (532)
.+.+.++ |..|+||||++..++..+... +..++.+++.
T Consensus 45 ~~~vli~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 45 PNNIFIY-GLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp CCCEEEE-ECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 3456666 899999999999999988765 7788888864
No 363
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=86.62 E-value=0.47 Score=44.78 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=22.4
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHH
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTL 203 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~L 203 (532)
.+.+|++. |..|+||||++..||..+
T Consensus 26 ~~~~i~l~-G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVIL-GPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEE-CCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 35688888 999999999999998777
No 364
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=86.59 E-value=0.51 Score=47.40 Aligned_cols=39 Identities=26% Similarity=0.192 Sum_probs=31.6
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHC------CCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~------G~rVllID~D~ 217 (532)
+.++.++ |..|+||||++..++..++.. |-+|+.||...
T Consensus 131 G~i~~I~-G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 131 QAITEVF-GEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 4688888 889999999999999887532 35889999864
No 365
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=86.51 E-value=0.42 Score=51.08 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.0
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHH
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAY 201 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~ 201 (532)
.++|+|+ |-||+||||+|..++.
T Consensus 152 ~~vv~I~-G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 152 SFFLFLH-GRAGSGKSVIASQALS 174 (549)
T ss_dssp SEEEEEE-CSTTSSHHHHHHHHHH
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHH
Confidence 4688888 8899999999998875
No 366
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=86.43 E-value=0.47 Score=48.89 Aligned_cols=43 Identities=26% Similarity=0.462 Sum_probs=33.9
Q ss_pred cceEEEEEe---CcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCC
Q 009574 177 ISNIVAVSS---CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 222 (532)
Q Consensus 177 ~~kiIav~s---~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~ 222 (532)
.+|.|.|++ ..-|.||||+++.|+.+|.+.|+++.+. .+.||+
T Consensus 42 ~GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~~~~---lRePSl 87 (543)
T 3do6_A 42 DGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIVT---LREPSL 87 (543)
T ss_dssp CCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEE---ECCCCH
T ss_pred CCeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCeeEEE---EecCCC
Confidence 467776664 5779999999999999999999998764 344453
No 367
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=86.39 E-value=0.87 Score=44.82 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=27.0
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
|.++|+|+ |-.|+||||+|..||..+ ..-+|.+|..
T Consensus 9 ~~~~i~i~-GptgsGKt~la~~La~~~-----~~~iis~Ds~ 44 (316)
T 3foz_A 9 LPKAIFLM-GPTASGKTALAIELRKIL-----PVELISVDSA 44 (316)
T ss_dssp CCEEEEEE-CCTTSCHHHHHHHHHHHS-----CEEEEECCTT
T ss_pred CCcEEEEE-CCCccCHHHHHHHHHHhC-----CCcEEecccc
Confidence 34555554 889999999999998764 3567888863
No 368
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=86.22 E-value=0.49 Score=42.72 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.2
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHH
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLA 204 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA 204 (532)
.|++. |-.|+||||++..||..|.
T Consensus 2 ~I~i~-G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIF-GTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEE-CCTTSCHHHHHHHHHHHHC
T ss_pred EEEEE-CCCccCHHHHHHHHHHhcC
Confidence 56666 8899999999999998773
No 369
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=86.11 E-value=0.36 Score=44.97 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=24.7
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
|+.|+|. |-.|+||||++..||..+ |. ..+|+|
T Consensus 7 ~~~I~l~-G~~GsGKsT~a~~La~~l---~~--~~i~~d 39 (227)
T 1zd8_A 7 LLRAVIM-GAPGSGKGTVSSRITTHF---EL--KHLSSG 39 (227)
T ss_dssp CCEEEEE-ECTTSSHHHHHHHHHHHS---SS--EEEEHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHc---CC--eEEech
Confidence 3567777 889999999999988765 44 456664
No 370
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=86.09 E-value=0.46 Score=40.56 Aligned_cols=35 Identities=9% Similarity=0.139 Sum_probs=27.4
Q ss_pred ceeeEEEEe-cCeeEEEEcCCCCcccCChHHHHhch
Q 009574 487 IEPEEIRPM-GNYAVSITWPDGFSQIAPYDQLQTME 521 (532)
Q Consensus 487 i~~~~~~~~-g~yal~i~w~dgh~~~y~~~~L~~~~ 521 (532)
..|+++... ....|.|.|+||+.+.|++.|||.-.
T Consensus 9 ~~p~~i~l~~~~~~L~v~w~DG~~~~~~~~wLRd~C 44 (132)
T 2l6n_A 9 PKVTGLKLKRKSRQLEISFDNGQQFTLSCELLRVYS 44 (132)
T ss_dssp CCEEEEEEEGGGTEEEEEETTSCEEEEEHHHHHHSC
T ss_pred CCCeeEEEecCCCEEEEEECCCCEEEeCHHHHHhcC
Confidence 445666654 23579999999999999999999874
No 371
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.07 E-value=0.59 Score=57.06 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=35.4
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
++++.++ |-.|+|||++|.++|....++|.+|+.||++-.
T Consensus 1427 g~~vll~-GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1427 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp TSEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 4566666 899999999999999999999999999998853
No 372
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=86.02 E-value=0.77 Score=44.62 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=27.6
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCC----cEEEEE
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGA----RVGIFD 214 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~----rVllID 214 (532)
.-+.++ |..|+|||++|..+|..+...+. .++.++
T Consensus 68 ~~vll~-G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 106 (309)
T 3syl_A 68 LHMSFT-GNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT 106 (309)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc
Confidence 456666 88999999999999999988654 555554
No 373
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=85.94 E-value=0.6 Score=46.07 Aligned_cols=34 Identities=29% Similarity=0.329 Sum_probs=25.7
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
++|+ .+|-.|+||||+|..||..+ ..-+|++|..
T Consensus 4 ~~i~-i~GptgsGKt~la~~La~~~-----~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVA-IVGPTAVGKTKTSVMLAKRL-----NGEVISGDSM 37 (322)
T ss_dssp EEEE-EECCTTSCHHHHHHHHHHTT-----TEEEEECCGG
T ss_pred cEEE-EECCCcCCHHHHHHHHHHhC-----ccceeecCcc
Confidence 3454 45889999999999998765 3568888853
No 374
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=85.78 E-value=0.78 Score=47.76 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=28.2
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHCCC-cEEEEE
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGMGA-RVGIFD 214 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~G~-rVllID 214 (532)
..+..|-.|+||||++..++..|.+.|. +|+++-
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a 81 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAA 81 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEec
Confidence 4445588999999999999999999887 677763
No 375
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=85.59 E-value=0.67 Score=43.78 Aligned_cols=33 Identities=18% Similarity=0.114 Sum_probs=24.7
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
+++|.++ |-.|+||||+|..|+..+ | ...+++|
T Consensus 29 ~~~I~l~-G~~GsGKsT~a~~L~~~~---g--~~~is~~ 61 (243)
T 3tlx_A 29 DGRYIFL-GAPGSGKGTQSLNLKKSH---C--YCHLSTG 61 (243)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHh---C--CeEEecH
Confidence 3466666 889999999999998776 4 3456664
No 376
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=85.34 E-value=0.83 Score=42.01 Aligned_cols=33 Identities=45% Similarity=0.575 Sum_probs=25.2
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+++|+++ |-.|+||||++..||. .|. -++|+|.
T Consensus 4 ~~~I~i~-G~~GSGKST~~~~L~~----lg~--~~id~D~ 36 (218)
T 1vht_A 4 RYIVALT-GGIGSGKSTVANAFAD----LGI--NVIDADI 36 (218)
T ss_dssp CEEEEEE-CCTTSCHHHHHHHHHH----TTC--EEEEHHH
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHH----cCC--EEEEccH
Confidence 3577777 8899999999988865 465 5678874
No 377
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=85.11 E-value=0.83 Score=49.84 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=31.0
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
+++..|=.|+|||++.+++...|.+.|.+||++-.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 66666889999999999999999999999998763
No 378
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=84.93 E-value=0.43 Score=43.28 Aligned_cols=34 Identities=29% Similarity=0.357 Sum_probs=25.3
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
+.++ |..|+||||++..++..+...+.++..+..
T Consensus 41 ~ll~-G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 74 (226)
T 2chg_A 41 LLFS-GPPGTGKTATAIALARDLFGENWRDNFIEM 74 (226)
T ss_dssp EEEE-CSTTSSHHHHHHHHHHHHHGGGGGGGEEEE
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHhccccccceEEe
Confidence 5555 899999999999999998766544434433
No 379
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=84.83 E-value=1.8 Score=41.32 Aligned_cols=47 Identities=21% Similarity=0.250 Sum_probs=39.2
Q ss_pred cceEEEEEeC-cCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCC
Q 009574 177 ISNIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP 223 (532)
Q Consensus 177 ~~kiIav~s~-KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~~ 223 (532)
.||-|.|+++ -.|.||=.+|+.|+..|..+|+||.++-+||+-|--+
T Consensus 22 ~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPYlNvD~ 69 (295)
T 2vo1_A 22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDA 69 (295)
T ss_dssp CCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECSSCCC-
T ss_pred cceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecccceecCC
Confidence 4567777744 6788999999999999999999999999999875433
No 380
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=84.69 E-value=0.53 Score=43.33 Aligned_cols=31 Identities=16% Similarity=0.068 Sum_probs=23.3
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
.|+|. |-.|+||||+|..||..+ |.. .||+|
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~~---g~~--~i~~d 32 (214)
T 1e4v_A 2 RIILL-GAPVAGKGTQAQFIMEKY---GIP--QISTG 32 (214)
T ss_dssp EEEEE-ESTTSSHHHHHHHHHHHH---CCC--EEEHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CCe--EEeHH
Confidence 35555 889999999999999877 554 45653
No 381
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=84.57 E-value=1.2 Score=45.86 Aligned_cols=34 Identities=29% Similarity=0.488 Sum_probs=30.3
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 213 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllI 213 (532)
..++|+|+ |--||||++.-|+..|...|++|.++
T Consensus 48 ~~~vI~VT---GTnGKtTT~~~l~~iL~~~G~~~g~~ 81 (422)
T 1w78_A 48 APFVFTVA---GTNGKGTTCRTLESILMAAGYKVGVY 81 (422)
T ss_dssp SSEEEEEE---CSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEe---CCcChHHHHHHHHHHHHHCCCCEEEE
Confidence 45799999 55789999999999999999999876
No 382
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=84.57 E-value=1 Score=47.11 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=31.2
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
..+|.++ |-.|+||||++..||..|...+.++..++.|.
T Consensus 39 ~~~Ivlv-GlpGsGKSTia~~La~~l~~~~~~t~~~~~d~ 77 (469)
T 1bif_A 39 PTLIVMV-GLPARGKTYISKKLTRYLNFIGVPTREFNVGQ 77 (469)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cEEEEEE-CCCCCCHHHHHHHHHHHHhccCCCceEEecch
Confidence 3455555 99999999999999999988888887777553
No 383
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=84.50 E-value=1 Score=45.02 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=30.5
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHC-CCcEEEEEcCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 217 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~-G~rVllID~D~ 217 (532)
.+.|+ |..|+||||++..++..+... +..++.+++..
T Consensus 46 ~~li~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~ 83 (389)
T 1fnn_A 46 RATLL-GRPGTGKTVTLRKLWELYKDKTTARFVYINGFI 83 (389)
T ss_dssp EEEEE-CCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc
Confidence 56666 999999999999999988776 67888888644
No 384
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=84.49 E-value=4.2 Score=35.52 Aligned_cols=86 Identities=13% Similarity=0.214 Sum_probs=44.6
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 360 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 360 (532)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++..... .
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~----~ 130 (183)
T 2fu5_C 56 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVE-KMILGNKCDVNDKR----Q 130 (183)
T ss_dssp EEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEEC--CCSCC----C
T ss_pred EEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECccCCccC----c
Confidence 3678999998743222222222446788998888764 3566666666665542 334 56888998754321 1
Q ss_pred cCCchHHHHHHHhCC
Q 009574 361 FGRGSGSQVVQQFGI 375 (532)
Q Consensus 361 ~~~~~~~~l~~~~g~ 375 (532)
...+..+++.+.++.
T Consensus 131 v~~~~~~~~~~~~~~ 145 (183)
T 2fu5_C 131 VSKERGEKLALDYGI 145 (183)
T ss_dssp SCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHcCC
Confidence 122345556666664
No 385
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=84.29 E-value=0.63 Score=46.54 Aligned_cols=38 Identities=18% Similarity=0.057 Sum_probs=29.2
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHC------CCcEEEEEcCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADV 217 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~------G~rVllID~D~ 217 (532)
+.+.++ |..|+||||++..++..+... +..++.+++..
T Consensus 45 ~~vll~-G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 45 SNALLY-GLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CCEEEC-BCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CcEEEE-CCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 355555 999999999999999998764 56666676543
No 386
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=84.12 E-value=0.96 Score=48.00 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=32.8
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
+.++++. |..|+||||++..++..++..|.+++.+...
T Consensus 281 G~i~~i~-G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 281 DSIILAT-GATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp SCEEEEE-ECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4577777 8999999999999999998889999888764
No 387
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=83.92 E-value=0.67 Score=49.52 Aligned_cols=40 Identities=38% Similarity=0.431 Sum_probs=32.2
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCC-CcEEEEEcCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMG-ARVGIFDADV 217 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G-~rVllID~D~ 217 (532)
.+.+|+++ |..|+||||++..||..|...+ .++.++|.|.
T Consensus 368 ~G~iI~Li-G~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 368 QGFTVFFT-GLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp SCEEEEEE-ESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred cceEEEEE-CCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 34678877 8899999999999999997554 5677788774
No 388
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=83.72 E-value=0.91 Score=42.27 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=22.6
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHH
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTL 203 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~L 203 (532)
+.+|+|.+. |-.|+||+|.|..||..+
T Consensus 27 ~k~kiI~ll-GpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVL-GGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEE-CCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEE-CCCCCCHHHHHHHHHHHH
Confidence 345788877 889999999999998776
No 389
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=83.71 E-value=1.4 Score=44.09 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=39.5
Q ss_pred CCEEEEcCCCCC-------ChhhhhhhhhcCCCeEEEEeCCC----cchHHHHHHHHHHHHcC-----CCCEEEEEEecc
Q 009574 286 LDYLVIDMPPGT-------GDIQLTLCQVVPLTAAVIVTTPQ----KLAFIDVAKGVRMFSKL-----KVPCIAVVENMC 349 (532)
Q Consensus 286 yD~VIIDtpp~~-------~~~~~~~~~~~~~d~viiV~~p~----~~s~~~~~~~i~~l~~~-----~~~~~gvV~N~~ 349 (532)
..++|+|+|.-. +........+..++.+++|+..+ ..++..+....+.+... +.+ +-+|+|++
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p-~ilV~NK~ 284 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP-QIIVANKM 284 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSC-BCBEEECT
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCC-EEEEEECc
Confidence 568999997611 11111112233478888888775 35677777777777653 344 46888997
Q ss_pred cc
Q 009574 350 HF 351 (532)
Q Consensus 350 ~~ 351 (532)
+.
T Consensus 285 Dl 286 (342)
T 1lnz_A 285 DM 286 (342)
T ss_dssp TS
T ss_pred cC
Confidence 64
No 390
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=83.60 E-value=0.64 Score=41.54 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=20.5
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHH
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTL 203 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~L 203 (532)
+++++++ |..|+||||++..|+..+
T Consensus 5 g~~i~i~-GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLL-GAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhC
Confidence 4577777 899999999999887754
No 391
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=83.57 E-value=2 Score=42.97 Aligned_cols=66 Identities=17% Similarity=0.143 Sum_probs=37.7
Q ss_pred CCCEEEEcCCCCCChh---------hhhhhhhcCCCeEEEEeCCCcc---hHHHHHHHHHHHHc-C-CCCEEEEEEeccc
Q 009574 285 ELDYLVIDMPPGTGDI---------QLTLCQVVPLTAAVIVTTPQKL---AFIDVAKGVRMFSK-L-KVPCIAVVENMCH 350 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~---------~~~~~~~~~~d~viiV~~p~~~---s~~~~~~~i~~l~~-~-~~~~~gvV~N~~~ 350 (532)
.+++.++|||+..... .........+|.+++|+..+.. +.......+..+.. . +.+ +-+|.|+++
T Consensus 213 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~p-iilV~NK~D 291 (357)
T 2e87_A 213 YFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLP-FLVVINKID 291 (357)
T ss_dssp TEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSC-EEEEECCTT
T ss_pred CceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCC-EEEEEECcc
Confidence 4568899998743211 0011112246888888875543 45555556655543 2 455 568889966
Q ss_pred c
Q 009574 351 F 351 (532)
Q Consensus 351 ~ 351 (532)
.
T Consensus 292 l 292 (357)
T 2e87_A 292 V 292 (357)
T ss_dssp T
T ss_pred c
Confidence 4
No 392
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=83.50 E-value=0.69 Score=42.95 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=23.6
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
.|.|. |-.|+||||++..||..+ |. ..+++|
T Consensus 2 ~I~l~-G~~GsGKsT~a~~La~~l---g~--~~i~~d 32 (223)
T 2xb4_A 2 NILIF-GPNGSGKGTQGNLVKDKY---SL--AHIESG 32 (223)
T ss_dssp EEEEE-CCTTSCHHHHHHHHHHHH---TC--EEEEHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CC--eEEchH
Confidence 45555 889999999999999877 44 356663
No 393
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=83.33 E-value=0.79 Score=42.01 Aligned_cols=31 Identities=16% Similarity=0.114 Sum_probs=23.1
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
.|.++ |-.|+||||+|..||..+ |. ..+|+|
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~~---~~--~~i~~d 32 (216)
T 3fb4_A 2 NIVLM-GLPGAGKGTQAEQIIEKY---EI--PHISTG 32 (216)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHH---CC--CEEEHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CC--cEeeHH
Confidence 35555 889999999999998776 44 346664
No 394
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=83.25 E-value=0.72 Score=43.87 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=30.0
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
-+.++ |..|+|||++|..++..+.+.+.+++.+++..
T Consensus 31 ~vll~-G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 31 PVLII-GERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (265)
T ss_dssp CEEEE-CCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred CEEEE-CCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence 34455 89999999999999988877777888888764
No 395
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=83.01 E-value=1.3 Score=45.57 Aligned_cols=33 Identities=30% Similarity=0.520 Sum_probs=29.9
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 213 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllI 213 (532)
.++|+|+ |--||||++.-|+..|...|++|.++
T Consensus 39 ~~vI~Vt---GTnGKtTT~~~l~~iL~~~G~~vg~~ 71 (428)
T 1jbw_A 39 GRYIHVT---GTNGKGSAANAIAHVLEASGLTVGLY 71 (428)
T ss_dssp SCEEEEE---CSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEE---CCCChHHHHHHHHHHHHHCCCCEEEE
Confidence 4699999 55789999999999999999999886
No 396
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=82.91 E-value=0.79 Score=43.53 Aligned_cols=27 Identities=33% Similarity=0.509 Sum_probs=22.2
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHH
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTL 203 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~L 203 (532)
..+.+|++. |-.|+||||++-.||..|
T Consensus 25 ~~g~~I~I~-G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVD-GPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEE-CCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEE-CCCCCCHHHHHHHHHHhc
Confidence 345689988 889999999999888655
No 397
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=82.89 E-value=0.81 Score=41.96 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=20.8
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHH
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTL 203 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~L 203 (532)
.+++|+++ |-.|+||||++..|+..+
T Consensus 7 ~g~~i~l~-GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLS-GPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEE-CCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEE-CcCCCCHHHHHHHHHhhC
Confidence 35677776 889999999998887654
No 398
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=82.82 E-value=1.7 Score=45.58 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=40.3
Q ss_pred cceEEEEEeCc-CCCcHHHHHHHHHHHHHHCCCcEEEEEcCCCCCCC
Q 009574 177 ISNIVAVSSCK-GGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 222 (532)
Q Consensus 177 ~~kiIav~s~K-GGvGKTTlA~nLA~~LA~~G~rVllID~D~~~~s~ 222 (532)
+||-|.|++|- .|.||-.+|+.|+..|..+|+||.++-+||+-|--
T Consensus 2 ~~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~k~dpylnvd 48 (535)
T 3nva_A 2 PNKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKIDPYINVD 48 (535)
T ss_dssp CCEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEEEEECSSSSS
T ss_pred CceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEEecCcceeec
Confidence 36888888764 88899999999999999999999999999986543
No 399
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=82.67 E-value=0.95 Score=42.75 Aligned_cols=42 Identities=12% Similarity=0.035 Sum_probs=31.4
Q ss_pred ccccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCCC
Q 009574 172 EGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 218 (532)
Q Consensus 172 ~~~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~~ 218 (532)
.....|+|++.|+++-||.|+ .+|..|+++|.+|.++|-+..
T Consensus 16 ~~~~~m~k~vlITGas~gIG~-----~la~~l~~~G~~V~~~~r~~~ 57 (251)
T 3orf_A 16 PRGSHMSKNILVLGGSGALGA-----EVVKFFKSKSWNTISIDFREN 57 (251)
T ss_dssp ------CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred ccccccCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCcc
Confidence 456678899999988888776 688889999999999997764
No 400
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=82.55 E-value=1.6 Score=45.14 Aligned_cols=35 Identities=34% Similarity=0.554 Sum_probs=31.0
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 213 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllI 213 (532)
...++|.|+ |-.||||++.-|+..|...|+||.++
T Consensus 50 ~~~~vI~Vt---GTNGKgSt~~~l~~iL~~~G~~vg~~ 84 (437)
T 3nrs_A 50 PAPKIFTVA---GTNGKGTTCCTLEAILLAAGLRVGVY 84 (437)
T ss_dssp SSSEEEEEE---CSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCEEEEE---CCcChHHHHHHHHHHHHHCCCcEEEE
Confidence 345799999 66799999999999999999999885
No 401
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=82.33 E-value=1.8 Score=41.44 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=29.3
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHC-CCcEEEEEcC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDAD 216 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~-G~rVllID~D 216 (532)
+.+++|+ |..|+||||+...|+..+... .-++.+.+-+
T Consensus 25 g~~v~i~-Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 25 MGLILVT-GPTGSGKSTTIASMIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp SEEEEEE-CSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CCEEEEE-CCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 4578888 889999999999999888653 4467666544
No 402
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=82.19 E-value=1 Score=45.53 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=27.3
Q ss_pred eCcCCCcHHHHHHHHHHHHHHC------CCcEEEEEcCC
Q 009574 185 SCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADV 217 (532)
Q Consensus 185 s~KGGvGKTTlA~nLA~~LA~~------G~rVllID~D~ 217 (532)
.|.+|+||||++..++..+... +..++.+++..
T Consensus 58 ~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 58 IGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp TTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred cCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC
Confidence 5999999999999999988763 66788888653
No 403
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=82.08 E-value=1.4 Score=44.74 Aligned_cols=35 Identities=34% Similarity=0.318 Sum_probs=30.3
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
++|+ |..|+||||+...++..+...|.+|+++|-+
T Consensus 38 ~~i~-G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 38 WTIL-AKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp EEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred eEEE-cCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4455 8899999999999999988889999999865
No 404
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=81.93 E-value=1.4 Score=43.66 Aligned_cols=33 Identities=33% Similarity=0.413 Sum_probs=28.7
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEE
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI 212 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVll 212 (532)
..++|+|+ |-.||||++.-++..|...|+++.+
T Consensus 107 ~~~~IaVT---GTnGKTTTt~ll~~iL~~~g~~~~~ 139 (326)
T 3eag_A 107 HHWVLGVA---GTHGKTTTASMLAWVLEYAGLAPGF 139 (326)
T ss_dssp GSEEEEEE---SSSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCCEEEEE---CCCCHHHHHHHHHHHHHHcCCCceE
Confidence 35799999 7789999999999999999988743
No 405
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=81.81 E-value=0.67 Score=42.27 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=20.0
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHH
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTL 203 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~L 203 (532)
++|+++ |-.|+||||++..|+..+
T Consensus 13 ~~i~l~-G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVC-GPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEE-CCTTSCHHHHHHHHHHHC
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHhC
Confidence 466666 889999999999998766
No 406
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=81.62 E-value=1.1 Score=46.29 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=30.9
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHC--CCcEEEEEcC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDAD 216 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~--G~rVllID~D 216 (532)
.+.+.++ |..|+||||++..+|..+... |.+++.+++.
T Consensus 130 ~~~lll~-Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 130 YNPLFIY-GGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp SCCEEEE-CSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 3456666 889999999999999998765 7888887764
No 407
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=81.51 E-value=1.3 Score=47.99 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=26.1
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHH----CCCcEEEE
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAG----MGARVGIF 213 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~----~G~rVllI 213 (532)
+.+..|..|+||||++..+...|.+ .|.+|+++
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~ 202 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 202 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEE
Confidence 4455599999999999999988874 45677765
No 408
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=81.46 E-value=1.9 Score=40.54 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=26.0
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
+-+.++ |..|+|||++|..+|..+ +.++..+++.
T Consensus 40 ~~vll~-G~~GtGKT~la~~la~~~---~~~~~~~~~~ 73 (262)
T 2qz4_A 40 KGALLL-GPPGCGKTLLAKAVATEA---QVPFLAMAGA 73 (262)
T ss_dssp CEEEEE-SCTTSSHHHHHHHHHHHH---TCCEEEEETT
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEechH
Confidence 355666 889999999999998866 5566666654
No 409
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=81.33 E-value=1.1 Score=40.64 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=24.0
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMG 207 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G 207 (532)
+++++ |..|+||||+...|+..+...|
T Consensus 3 ~i~i~-G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLT-GPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEE-SCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEE-CCCCChHHHHHHHHHhhcccCC
Confidence 67777 9999999999999999988667
No 410
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=81.25 E-value=3 Score=45.08 Aligned_cols=69 Identities=10% Similarity=0.079 Sum_probs=48.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch-------HHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-------FIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s-------~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
..+.++|+|||+-..........+..+|.+++|+...... .......+..+...+++.+-+|+|+++..
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~ 318 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 318 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTT
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 5678999999875444433344455689999999887632 13455666777778887778889997753
No 411
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=81.22 E-value=2.2 Score=44.50 Aligned_cols=66 Identities=9% Similarity=-0.015 Sum_probs=33.8
Q ss_pred CCCCEEEEcCCCCCChh--------hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~--------~~~~~~~~~~d~viiV~~p~~~s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
+.+.+.|+|||+-.... ......+..+|.+++|+..+..........++.+.. .+ +-+|.|+++..
T Consensus 270 ~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~p-iivV~NK~Dl~ 343 (462)
T 3geh_A 270 GGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RP-LILVMNKIDLV 343 (462)
T ss_dssp TTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SC-EEEEEECTTSS
T ss_pred CCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--Cc-EEEEEECCCCC
Confidence 56778999997732110 001112345788999888765332333444555543 33 56888997753
No 412
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=81.15 E-value=1.8 Score=45.53 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=30.9
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 214 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID 214 (532)
..++|+|+ |-.||||++.-|+..|...|++|.++-
T Consensus 107 ~~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~~~g 141 (498)
T 1e8c_A 107 NLRLVGVT---GTNGKTTTTQLLAQWSQLLGEISAVMG 141 (498)
T ss_dssp SSEEEEEE---SSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCeEEEEe---CCcChHHHHHHHHHHHHhCCCCEEEEC
Confidence 35799999 667999999999999999999998874
No 413
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=80.90 E-value=1.7 Score=45.43 Aligned_cols=69 Identities=4% Similarity=-0.125 Sum_probs=33.6
Q ss_pred CCCCEEEEcCCCCCChh--------hhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~--------~~~~~~~~~~d~viiV~~p~~~-s~~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
+.+.+.|+|||+-.... ..+...+..+|.+++|+..+.. +........+.+....-..+-+|+|+++..
T Consensus 279 ~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~ 356 (476)
T 3gee_A 279 DKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRA 356 (476)
T ss_dssp TTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSC
T ss_pred CCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCC
Confidence 45678999997632110 0111224467899999887643 222122223333333333467888997754
No 414
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=80.90 E-value=1.5 Score=42.37 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=27.8
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+-+.++ |..|+|||++|..+|..+ +.++..+++..
T Consensus 51 ~~vll~-G~~GtGKT~la~~la~~l---~~~~~~i~~~~ 85 (310)
T 1ofh_A 51 KNILMI-GPTGVGKTEIARRLAKLA---NAPFIKVEATK 85 (310)
T ss_dssp CCEEEE-CCTTSSHHHHHHHHHHHH---TCCEEEEEGGG
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEEcchh
Confidence 345566 889999999999999887 56777777654
No 415
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=80.82 E-value=0.88 Score=41.72 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=22.6
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
.|.++ |-.|+||||+|..||..+ |. ..+|+|
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~~---~~--~~i~~d 32 (216)
T 3dl0_A 2 NLVLM-GLPGAGKGTQGERIVEKY---GI--PHISTG 32 (216)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHS---SC--CEEEHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CC--cEEeHH
Confidence 35555 889999999999987654 44 456664
No 416
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=80.76 E-value=1.1 Score=40.62 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=20.4
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHH
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTL 203 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~L 203 (532)
+++|+++ |..|+||||++..|+..+
T Consensus 6 g~~i~l~-G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLS-GPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEE-CSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhh
Confidence 3577877 889999999998887665
No 417
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=80.46 E-value=0.97 Score=44.61 Aligned_cols=37 Identities=14% Similarity=0.280 Sum_probs=29.4
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+++++++ |--|+||||+.-.|+... .|+|+.+|.-|.
T Consensus 4 i~v~~i~-G~~GaGKTTll~~l~~~~--~~~~~aVi~~d~ 40 (318)
T 1nij_A 4 IAVTLLT-GFLGAGKTTLLRHILNEQ--HGYKIAVIENEF 40 (318)
T ss_dssp EEEEEEE-ESSSSSCHHHHHHHHHSC--CCCCEEEECSSC
T ss_pred ccEEEEE-ecCCCCHHHHHHHHHhhc--CCCcEEEEEecC
Confidence 4566666 889999999988777643 689999998775
No 418
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=80.09 E-value=2 Score=45.60 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=31.1
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 214 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID 214 (532)
..++|+|+ |-.||||++.-|+..|...|++|.++-
T Consensus 145 ~~~vI~VT---GTnGKTTT~~ml~~iL~~~G~~~g~~g 179 (535)
T 2wtz_A 145 RLTVIGIT---GTSGKTTTTYLVEAGLRAAGRVAGLIG 179 (535)
T ss_dssp SSEEEEEE---SSSCHHHHHHHHHHHHHHTTCCEEEES
T ss_pred cceEEEee---CCCChHHHHHHHHHHHHHCCCCEEEEC
Confidence 45899999 667999999999999999999998763
No 419
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=79.88 E-value=1.2 Score=40.28 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=20.9
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHH
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTL 203 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~L 203 (532)
+.+|+++ |-.|+||||++..|+..+
T Consensus 7 g~ii~l~-Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIIS-APSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEE-CcCCCCHHHHHHHHHhhC
Confidence 3588888 889999999999888764
No 420
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=79.88 E-value=1.3 Score=41.74 Aligned_cols=34 Identities=41% Similarity=0.536 Sum_probs=25.7
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+.+|++. |-.|+||||++..||..| | ...+|.|.
T Consensus 9 ~~~i~i~-G~~GsGKsTla~~la~~l---g--~~~~d~g~ 42 (233)
T 3r20_A 9 SLVVAVD-GPAGTGKSSVSRGLARAL---G--ARYLDTGA 42 (233)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHh---C--CCcccCCc
Confidence 3467776 889999999999998877 3 34567664
No 421
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=79.87 E-value=1.9 Score=45.19 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=29.8
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 213 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllI 213 (532)
..++|.|+ |--||||++.-|+..|...|+||.++
T Consensus 63 ~~~vI~Vt---GTNGKtST~~~l~~iL~~~G~~vG~~ 96 (487)
T 2vos_A 63 SYPSIHIA---GTNGKTSVARMVDALVTALHRRTGRT 96 (487)
T ss_dssp SSCEEEEE---CSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCeEEEEe---CCCCcHHHHHHHHHHHHHcCCCeEEE
Confidence 35699999 55689999999999999999999765
No 422
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=79.86 E-value=1.1 Score=47.98 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=28.5
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHH---HH-CCCcEEEEEcCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTL---AG-MGARVGIFDADV 217 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~L---A~-~G~rVllID~D~ 217 (532)
..++|+|+ |-||+||||+|..++... .. ....|.-++++.
T Consensus 146 ~~~~v~I~-G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~ 189 (591)
T 1z6t_A 146 EPGWVTIH-GMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK 189 (591)
T ss_dssp SCEEEEEE-CCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES
T ss_pred CCceEEEE-cCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC
Confidence 35677777 999999999999987653 22 223577777754
No 423
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=79.79 E-value=1.4 Score=40.19 Aligned_cols=27 Identities=33% Similarity=0.294 Sum_probs=21.9
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGM 206 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~ 206 (532)
+.+.|+ |..|+||||++..++..+...
T Consensus 46 ~~~ll~-G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 46 HAYLFS-GTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp SEEEEE-CSTTSCHHHHHHHHHHHHHCT
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHhcCC
Confidence 356666 899999999999999888643
No 424
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=79.70 E-value=1.1 Score=42.67 Aligned_cols=34 Identities=32% Similarity=0.404 Sum_probs=26.7
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+++|+++ |..|+||||++..||..| |. -.+|.|.
T Consensus 48 g~~i~l~-G~~GsGKSTl~~~La~~l---g~--~~~d~d~ 81 (250)
T 3nwj_A 48 GRSMYLV-GMMGSGKTTVGKIMARSL---GY--TFFDCDT 81 (250)
T ss_dssp TCCEEEE-CSTTSCHHHHHHHHHHHH---TC--EEEEHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhc---CC--cEEeCcH
Confidence 4578887 889999999999999877 33 4677764
No 425
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=79.63 E-value=1.3 Score=39.60 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.6
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHH
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLA 204 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA 204 (532)
.++++ |..|+||||+...|+..+.
T Consensus 2 ~i~l~-G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIIT-GEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEE-CCTTSSHHHHHHHHHHHHG
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHhC
Confidence 56777 9999999999999998884
No 426
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=79.62 E-value=1.8 Score=44.81 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=30.3
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 213 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllI 213 (532)
..++|+|+ |--||||++.-|+..|...|++|.++
T Consensus 51 ~~~vI~VT---GTnGKtTT~~~l~~iL~~~G~~vg~~ 84 (442)
T 1o5z_A 51 EYKTIHIG---GTNGKGSVANMVSNILVSQGYRVGSY 84 (442)
T ss_dssp SSEEEEEE---CSSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred cCCEEEEE---CCcCHHHHHHHHHHHHHHCCCCEEEE
Confidence 35799999 55799999999999999999999886
No 427
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=78.93 E-value=6.7 Score=34.84 Aligned_cols=85 Identities=7% Similarity=-0.006 Sum_probs=46.9
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC------CCCEEEEEEecccccC-CCc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL------KVPCIAVVENMCHFDA-DGK 356 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~------~~~~~gvV~N~~~~~~-~~~ 356 (532)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++... ..
T Consensus 72 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~- 149 (208)
T 2yc2_C 72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR-AVLVANKTDLPPQRH- 149 (208)
T ss_dssp EEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCE-EEEEEECC--------
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCc-EEEEEECcccchhhc-
Confidence 5678999998642222222222445788888888754 3556666666666542 334 668889977543 11
Q ss_pred cccccCCchHHHHHHHhC
Q 009574 357 RYYPFGRGSGSQVVQQFG 374 (532)
Q Consensus 357 ~~~~~~~~~~~~l~~~~g 374 (532)
....+..+++.+.++
T Consensus 150 ---~v~~~~~~~~~~~~~ 164 (208)
T 2yc2_C 150 ---QVRLDMAQDWATTNT 164 (208)
T ss_dssp ---CCCHHHHHHHHHHTT
T ss_pred ---cCCHHHHHHHHHHcC
Confidence 112234555666655
No 428
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=78.88 E-value=1 Score=40.54 Aligned_cols=32 Identities=22% Similarity=0.130 Sum_probs=26.0
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
|.|+ |-.|+||||.|..||.. |.+|+.|++..
T Consensus 2 ilV~-Gg~~SGKS~~A~~la~~----~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVT-GGARSGKSRHAEALIGD----APQVLYIATSQ 33 (180)
T ss_dssp EEEE-ECTTSSHHHHHHHHHCS----CSSEEEEECCC
T ss_pred EEEE-CCCCCcHHHHHHHHHhc----CCCeEEEecCC
Confidence 4555 77899999999998754 77899999865
No 429
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=78.72 E-value=1.4 Score=40.47 Aligned_cols=23 Identities=35% Similarity=0.302 Sum_probs=19.5
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHH
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTL 203 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~L 203 (532)
+|.+. |..|+||+|.|..||..+
T Consensus 2 ~Iil~-GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFL-GPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHH
Confidence 45666 889999999999998766
No 430
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=77.91 E-value=1.5 Score=41.57 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=30.6
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
|.|++.|+++-+|.|+ .+|..|++.|.+|.++|.|.
T Consensus 1 MnK~vlVTGas~GIG~-----aia~~la~~Ga~V~~~~~~~ 36 (247)
T 3ged_A 1 MNRGVIVTGGGHGIGK-----QICLDFLEAGDKVCFIDIDE 36 (247)
T ss_dssp -CCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEecCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4589999999999887 56888999999999999774
No 431
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=77.88 E-value=1.7 Score=40.10 Aligned_cols=33 Identities=33% Similarity=0.395 Sum_probs=25.6
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
|--|+++ |--|+||||++.-|+. .|.. +||+|.
T Consensus 9 ~~~iglT-GgigsGKStv~~~l~~----~g~~--vidaD~ 41 (210)
T 4i1u_A 9 MYAIGLT-GGIGSGKTTVADLFAA----RGAS--LVDTDL 41 (210)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHH----TTCE--EEEHHH
T ss_pred eeEEEEE-CCCCCCHHHHHHHHHH----CCCc--EEECcH
Confidence 5578888 7789999999887654 5754 578886
No 432
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=77.60 E-value=1.4 Score=40.39 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=23.6
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
++.|+|+ |..|+||||+|..|| ++|. -+|..|.
T Consensus 34 g~~ilI~-GpsGsGKStLA~~La----~~g~--~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLIT-GDSGVGKSETALELV----QRGH--RLIADDR 66 (205)
T ss_dssp TEEEEEE-CCCTTTTHHHHHHHH----TTTC--EEEESSE
T ss_pred CEEEEEE-CCCCCCHHHHHHHHH----HhCC--eEEecch
Confidence 4677777 899999999887654 5566 4555553
No 433
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=77.49 E-value=2 Score=46.51 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=27.8
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHH-CCCcEEEEE
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFD 214 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~-~G~rVllID 214 (532)
+.+..|-.|+||||+.+.++..|.+ .+.+|+++-
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a 231 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA 231 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEE
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 4455588999999999999999887 678888764
No 434
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=77.48 E-value=2.5 Score=39.80 Aligned_cols=31 Identities=19% Similarity=0.074 Sum_probs=23.4
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 214 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID 214 (532)
-+.++ |..|+||||++..+|..+ +..+..++
T Consensus 47 ~vll~-G~~GtGKT~la~~la~~~---~~~~~~i~ 77 (257)
T 1lv7_A 47 GVLMV-GPPGTGKTLLAKAIAGEA---KVPFFTIS 77 (257)
T ss_dssp EEEEE-CCTTSCHHHHHHHHHHHH---TCCEEEEC
T ss_pred eEEEE-CcCCCCHHHHHHHHHHHc---CCCEEEEe
Confidence 46666 889999999999998876 44554444
No 435
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=77.38 E-value=5.1 Score=40.22 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=17.9
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHH
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLA 200 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA 200 (532)
.++|+++ |..|+||||+--.|+
T Consensus 179 ~~~V~lv-G~~naGKSTLln~L~ 200 (364)
T 2qtf_A 179 IPSIGIV-GYTNSGKTSLFNSLT 200 (364)
T ss_dssp CCEEEEE-CBTTSSHHHHHHHHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHH
Confidence 3467888 899999999987765
No 436
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=77.35 E-value=9.4 Score=32.39 Aligned_cols=87 Identities=21% Similarity=0.148 Sum_probs=43.4
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRY 358 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~-~~s~~~~~~~i~~l~~~----~~~~~gvV~N~~~~~~~~~~~ 358 (532)
..+.+.++|+|+...........+..+|.+++|...+ ..++..+...+..+... +.+ +-+|.|+++.....
T Consensus 47 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~--- 122 (166)
T 3q72_A 47 EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVP-IILVGNKSDLVRSR--- 122 (166)
T ss_dssp EEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCC-EEEEEECTTCCSSC---
T ss_pred EEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEecccccccc---
Confidence 3456789999874332222222234568888776654 44666666666666543 455 56888997754321
Q ss_pred cccCCchHHHHHHHhCC
Q 009574 359 YPFGRGSGSQVVQQFGI 375 (532)
Q Consensus 359 ~~~~~~~~~~l~~~~g~ 375 (532)
....+..+.+.+.++.
T Consensus 123 -~~~~~~~~~~~~~~~~ 138 (166)
T 3q72_A 123 -EVSVDEGRACAVVFDC 138 (166)
T ss_dssp -CSCHHHHHHHHHHTTC
T ss_pred -ccCHHHHHHHHHHhCC
Confidence 1222334555555554
No 437
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=77.32 E-value=1.8 Score=40.34 Aligned_cols=34 Identities=29% Similarity=0.336 Sum_probs=26.6
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+.+|+++ |-.|+||||++..||..| |. ..+|.|.
T Consensus 16 ~~~i~i~-G~~gsGKst~~~~l~~~l---g~--~~~d~d~ 49 (236)
T 1q3t_A 16 TIQIAID-GPASSGKSTVAKIIAKDF---GF--TYLDTGA 49 (236)
T ss_dssp CCEEEEE-CSSCSSHHHHHHHHHHHH---CC--EEEEHHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHc---CC--ceecCCC
Confidence 4578888 889999999999888766 43 5678775
No 438
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=77.29 E-value=1.6 Score=41.35 Aligned_cols=29 Identities=21% Similarity=0.106 Sum_probs=22.2
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcE
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARV 210 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rV 210 (532)
|++|+++ |+.|+||||+|..|+.. .|.++
T Consensus 1 m~~i~lt-G~~~sGK~tv~~~l~~~---~g~~~ 29 (241)
T 1dek_A 1 MKLIFLS-GVKRSGKDTTADFIMSN---YSAVK 29 (241)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHH---SCEEE
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHh---cCCeE
Confidence 4688888 78999999999877543 46554
No 439
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=77.21 E-value=2.2 Score=38.23 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=20.7
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCc
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR 209 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~r 209 (532)
++-+.|+ +..|+||||+|..|.. +|++
T Consensus 16 G~gvli~-G~SGaGKStlal~L~~----rG~~ 42 (181)
T 3tqf_A 16 KMGVLIT-GEANIGKSELSLALID----RGHQ 42 (181)
T ss_dssp TEEEEEE-ESSSSSHHHHHHHHHH----TTCE
T ss_pred CEEEEEE-cCCCCCHHHHHHHHHH----cCCe
Confidence 4566777 8899999999887654 6775
No 440
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=77.19 E-value=1.1 Score=40.07 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=20.8
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHH
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLA 204 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA 204 (532)
++++++ |..|+||||+.-.|+..+.
T Consensus 2 ~ii~l~-GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVIS-GPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEE-SSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhhCC
Confidence 467776 8899999999999887765
No 441
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=76.90 E-value=2.5 Score=40.20 Aligned_cols=32 Identities=16% Similarity=-0.004 Sum_probs=23.9
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 214 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID 214 (532)
+-+.++ |..|+|||++|..+|..+ |.+++.++
T Consensus 65 ~~vLl~-G~~GtGKT~la~~ia~~~---~~~~~~i~ 96 (272)
T 1d2n_A 65 VSVLLE-GPPHSGKTALAAKIAEES---NFPFIKIC 96 (272)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHH---TCSEEEEE
T ss_pred eEEEEE-CCCCCcHHHHHHHHHHHh---CCCEEEEe
Confidence 455666 889999999999998874 45555554
No 442
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=76.90 E-value=2 Score=43.15 Aligned_cols=35 Identities=29% Similarity=0.308 Sum_probs=27.5
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
..|.++ |-.|+|||++|..+|..+ |.++..+|+..
T Consensus 73 ~~ill~-Gp~GtGKT~la~~la~~l---~~~~~~~~~~~ 107 (376)
T 1um8_A 73 SNILLI-GPTGSGKTLMAQTLAKHL---DIPIAISDATS 107 (376)
T ss_dssp CCEEEE-CCTTSSHHHHHHHHHHHT---TCCEEEEEGGG
T ss_pred CCEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEecchh
Confidence 356666 889999999999999877 66777777644
No 443
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.67 E-value=1.9 Score=45.55 Aligned_cols=34 Identities=26% Similarity=0.243 Sum_probs=27.3
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
+.+.++ |-.|+||||+|..+|..+ |..++-+++.
T Consensus 78 ~~lLL~-GppGtGKTtla~~la~~l---~~~~i~in~s 111 (516)
T 1sxj_A 78 RAAMLY-GPPGIGKTTAAHLVAQEL---GYDILEQNAS 111 (516)
T ss_dssp SEEEEE-CSTTSSHHHHHHHHHHHT---TCEEEEECTT
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHc---CCCEEEEeCC
Confidence 466665 889999999999998877 7788777654
No 444
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=76.58 E-value=1.6 Score=40.61 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=27.0
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
..+.+|+|. |.-|+||||++..|+.. |.+|.+..-+
T Consensus 18 ~~g~~i~i~-G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 18 TQPFTVLIE-GNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp CCCEEEEEE-CSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred CCceEEEEE-CCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 345788888 88999999998887765 5567666443
No 445
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=76.33 E-value=2.4 Score=41.76 Aligned_cols=37 Identities=30% Similarity=0.451 Sum_probs=30.0
Q ss_pred eEEEEEeC-cCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 179 NIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 179 kiIav~s~-KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
.||+|-|- -||+|||-++..||..|. ++++.+|.=..
T Consensus 37 PVI~VGNitvGGTGKTP~vi~L~~~L~--~~~~~ilsRGY 74 (315)
T 4ehx_A 37 PVISVGNLSVGGSGKTSFVMYLADLLK--DKRVCILSRGY 74 (315)
T ss_dssp CEEEEEESBSSCCSHHHHHHHHHHHTT--TSCEEEEECCC
T ss_pred CEEEECCEEeCCCChHHHHHHHHHHHh--hcCceEEeecc
Confidence 58888875 799999999999999994 56777776554
No 446
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=76.19 E-value=2 Score=40.06 Aligned_cols=34 Identities=29% Similarity=0.486 Sum_probs=26.4
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+.+|+|. +--|+||||++..||..| |.+ ++|.|.
T Consensus 14 ~~iI~i~-g~~gsGk~~i~~~la~~l---g~~--~~d~~~ 47 (223)
T 3hdt_A 14 NLIITIE-REYGSGGRIVGKKLAEEL---GIH--FYDDDI 47 (223)
T ss_dssp CEEEEEE-ECTTSCHHHHHHHHHHHH---TCE--EECHHH
T ss_pred CeEEEEe-CCCCCCHHHHHHHHHHHc---CCc--EEcHHH
Confidence 3467766 889999999999999887 444 578765
No 447
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=76.16 E-value=2.8 Score=43.40 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=28.2
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEE
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI 212 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVll 212 (532)
.++|+|+ |-.||||++.-++..|...|++|.+
T Consensus 112 ~~~IaVT---GTnGKTTTt~ml~~iL~~~g~~~~~ 143 (451)
T 3lk7_A 112 SQLIGIT---GSNGKTTTTTMIAEVLNAGGQRGLL 143 (451)
T ss_dssp SEEEEEE---CSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEE---CCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3799999 5678999999999999999998855
No 448
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=76.16 E-value=2.8 Score=41.92 Aligned_cols=35 Identities=20% Similarity=0.140 Sum_probs=26.7
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
..+.|.++ |..|+|||++|..+|..+ |..+..+++
T Consensus 116 ~~~~vLl~-GppGtGKT~la~aia~~~---~~~~~~i~~ 150 (357)
T 3d8b_A 116 PPKGILLF-GPPGTGKTLIGKCIASQS---GATFFSISA 150 (357)
T ss_dssp CCSEEEEE-SSTTSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred CCceEEEE-CCCCCCHHHHHHHHHHHc---CCeEEEEeh
Confidence 34567777 889999999999998764 666766665
No 449
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=76.10 E-value=1.5 Score=41.10 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=21.5
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHH
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLA 204 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA 204 (532)
++.|+|. |--|+||||++..|+..|.
T Consensus 2 ~~~i~~~-G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIE-GNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEE-ECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEE-cCCCCCHHHHHHHHHHHcC
Confidence 3577777 7799999999999988773
No 450
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=75.99 E-value=2.4 Score=48.70 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=29.4
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHH--HH-HCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYT--LA-GMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~--LA-~~G~rVllID~D~ 217 (532)
.++|+|+ |-||+||||+|..++.. .. +-...++.++++.
T Consensus 150 ~RVV~Iv-GmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~ 191 (1221)
T 1vt4_I 150 AKNVLID-GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191 (1221)
T ss_dssp SCEEEEC-CSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC
T ss_pred CeEEEEE-cCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC
Confidence 4688887 88999999999998853 23 3345688888764
No 451
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=75.85 E-value=8.4 Score=34.71 Aligned_cols=87 Identities=11% Similarity=0.164 Sum_probs=48.0
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 360 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 360 (532)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...++.+... ....+-+|+|+++..... .
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~----~ 158 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQR----E 158 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGC----C
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccccc----c
Confidence 5678999998732222222223456789999888654 3455555444444332 122467889997753211 1
Q ss_pred cCCchHHHHHHHhCC
Q 009574 361 FGRGSGSQVVQQFGI 375 (532)
Q Consensus 361 ~~~~~~~~l~~~~g~ 375 (532)
...+..+++.+.++.
T Consensus 159 v~~~~~~~~~~~~~~ 173 (217)
T 2f7s_A 159 VNERQARELADKYGI 173 (217)
T ss_dssp SCHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHCCC
Confidence 122345556666664
No 452
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=75.82 E-value=2.9 Score=40.20 Aligned_cols=34 Identities=21% Similarity=0.092 Sum_probs=24.6
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
.+.+.++ |..|+||||+|..+|..+ +....-+++
T Consensus 54 ~~~vll~-Gp~GtGKT~la~~la~~~---~~~~~~i~~ 87 (297)
T 3b9p_A 54 AKGLLLF-GPPGNGKTLLARAVATEC---SATFLNISA 87 (297)
T ss_dssp CSEEEEE-SSSSSCHHHHHHHHHHHT---TCEEEEEES
T ss_pred CCeEEEE-CcCCCCHHHHHHHHHHHh---CCCeEEeeH
Confidence 4566666 899999999999988765 444444443
No 453
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=75.82 E-value=1.6 Score=39.62 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=20.9
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHH
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLA 204 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA 204 (532)
+++++++ |..|+||||+.-.|+..+.
T Consensus 4 g~~i~lv-GpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLS-GPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEE-CCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhCc
Confidence 3577777 8899999999999887663
No 454
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=75.62 E-value=2.6 Score=43.22 Aligned_cols=35 Identities=37% Similarity=0.431 Sum_probs=29.2
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
+.|. |..|+|||++...+...+.+.|.+|+++|..
T Consensus 56 ~~i~-G~tGsGKs~~~~~li~~~~~~g~~viv~Dpk 90 (437)
T 1e9r_A 56 LLVN-GATGTGKSVLLRELAYTGLLRGDRMVIVDPN 90 (437)
T ss_dssp EEEE-ECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4445 7789999999888888888899999999854
No 455
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=75.56 E-value=2.8 Score=40.02 Aligned_cols=33 Identities=18% Similarity=0.074 Sum_probs=24.9
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
+-+.++ |-.|+||||+|..+|..+ +.++..+++
T Consensus 52 ~~~ll~-G~~GtGKT~la~~la~~~---~~~~~~v~~ 84 (285)
T 3h4m_A 52 KGILLY-GPPGTGKTLLAKAVATET---NATFIRVVG 84 (285)
T ss_dssp SEEEEE-SSSSSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred CeEEEE-CCCCCcHHHHHHHHHHHh---CCCEEEEeh
Confidence 356666 889999999999887764 566666655
No 456
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=75.51 E-value=4.9 Score=35.82 Aligned_cols=87 Identities=11% Similarity=0.130 Sum_probs=47.0
Q ss_pred CCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEecccccCCCcccccc
Q 009574 285 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPF 361 (532)
Q Consensus 285 ~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~-~s~~~~~~~i~~l~~~~--~~~~gvV~N~~~~~~~~~~~~~~ 361 (532)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+.... ...+-+|.|+++..... ..
T Consensus 81 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~----~v 156 (199)
T 3l0i_B 81 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK----VV 156 (199)
T ss_dssp EEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--C----CC
T ss_pred EEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccc----cC
Confidence 3678999998743222222222446788888877654 46667777777776652 12356788997754321 11
Q ss_pred CCchHHHHHHHhCC
Q 009574 362 GRGSGSQVVQQFGI 375 (532)
Q Consensus 362 ~~~~~~~l~~~~g~ 375 (532)
.....+.+.+.++.
T Consensus 157 ~~~~~~~~~~~~~~ 170 (199)
T 3l0i_B 157 DYTTAKEFADSLGI 170 (199)
T ss_dssp CSCC-CHHHHTTTC
T ss_pred CHHHHHHHHHHcCC
Confidence 22334556666654
No 457
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=75.29 E-value=1.9 Score=39.44 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=18.6
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHH
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTL 203 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~L 203 (532)
++|+++ |..|+||||+...|+..+
T Consensus 20 ~~ivl~-GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 20 KTLVLI-GASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHHHHC
T ss_pred CEEEEE-CcCCCCHHHHHHHHHhhC
Confidence 455554 999999999998887543
No 458
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=75.23 E-value=1.1 Score=41.09 Aligned_cols=33 Identities=27% Similarity=0.260 Sum_probs=24.9
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
.+|+++ |-.|+||||++..||..+ |. -++|.|.
T Consensus 4 ~~i~i~-G~~gsGkst~~~~l~~~~---g~--~~~~~d~ 36 (219)
T 2h92_A 4 INIALD-GPAAAGKSTIAKRVASEL---SM--IYVDTGA 36 (219)
T ss_dssp CCEEEE-CCTTSSHHHHHHHHHHHT---TC--EEEEHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhc---CC--ceecCCh
Confidence 356666 889999999998887655 53 4678774
No 459
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=75.22 E-value=9.7 Score=37.56 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=25.1
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 214 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID 214 (532)
+.+++|+ |..|+||||+...|+..+.... ..+.++
T Consensus 171 g~~v~i~-G~~GsGKTTll~~l~g~~~~~~-g~i~i~ 205 (330)
T 2pt7_A 171 GKNVIVC-GGTGSGKTTYIKSIMEFIPKEE-RIISIE 205 (330)
T ss_dssp TCCEEEE-ESTTSCHHHHHHHGGGGSCTTS-CEEEEE
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCCcCCC-cEEEEC
Confidence 3577888 7889999999888887765433 344554
No 460
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=75.19 E-value=2 Score=40.33 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=29.6
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
|+|++.|+++-||.|+ .+|..|+++|.+|.++|-+.
T Consensus 1 m~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 36 (247)
T 3dii_A 1 MNRGVIVTGGGHGIGK-----QICLDFLEAGDKVCFIDIDE 36 (247)
T ss_dssp -CCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4679999988888886 57888999999999998654
No 461
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=74.87 E-value=2.6 Score=47.13 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=28.0
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHH-CCCcEEEEE
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFD 214 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~-~G~rVllID 214 (532)
+.+..|-.|+||||+.+.++..|.+ .|.+|+++-
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a 407 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA 407 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEc
Confidence 4455699999999999999999887 678888763
No 462
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=74.84 E-value=1.2 Score=45.89 Aligned_cols=34 Identities=24% Similarity=0.222 Sum_probs=23.9
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+++|.++ |-.|+||||+|..|+..+ | ...||.|.
T Consensus 258 ~~lIil~-G~pGSGKSTla~~L~~~~---~--~~~i~~D~ 291 (416)
T 3zvl_A 258 PEVVVAV-GFPGAGKSTFIQEHLVSA---G--YVHVNRDT 291 (416)
T ss_dssp CCEEEEE-SCTTSSHHHHHHHHTGGG---T--CEECCGGG
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHhc---C--cEEEccch
Confidence 4455555 999999999999887644 3 34566654
No 463
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=74.75 E-value=1.8 Score=40.02 Aligned_cols=37 Identities=27% Similarity=0.459 Sum_probs=29.6
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
.|.|++.|+++-||.|+ .+|..|+++|++|.+++-+.
T Consensus 3 ~~~k~vlVtGasggiG~-----~~a~~l~~~G~~V~~~~r~~ 39 (234)
T 2ehd_A 3 GMKGAVLITGASRGIGE-----ATARLLHAKGYRVGLMARDE 39 (234)
T ss_dssp -CCCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 45678999988888875 67788889999999998653
No 464
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=74.71 E-value=3 Score=41.14 Aligned_cols=27 Identities=7% Similarity=0.042 Sum_probs=22.4
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGM 206 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~ 206 (532)
..+.+ +|..|+|||+++-.++..|.+.
T Consensus 46 ~~lli-~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 46 KLFYI-TNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp CEEEE-ECCCSHHHHHHHHHHHHHHHHT
T ss_pred CeEEE-ECCCCCCHHHHHHHHHHHHHHH
Confidence 45544 5999999999999999999753
No 465
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=74.22 E-value=2.1 Score=49.84 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=30.8
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHHH----CCCcEEEEEcCC
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLAG----MGARVGIFDADV 217 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA~----~G~rVllID~D~ 217 (532)
+..++|+|+ |-||+||||+|..++..... ....|..+++..
T Consensus 145 ~~~~~v~i~-G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 145 GEPGWVTIY-GMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp TSCEEEEEE-CSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred CCCCEEEEE-eCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 445788888 89999999999998876532 234677888754
No 466
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=74.16 E-value=3.2 Score=42.76 Aligned_cols=33 Identities=36% Similarity=0.476 Sum_probs=29.4
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 213 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllI 213 (532)
.++|+|+ |--||||++.-|+..|...|++|.+.
T Consensus 104 ~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~~~ 136 (439)
T 2x5o_A 104 APIVAIT---GSNGKSTVTTLVGEMAKAAGVNVGVG 136 (439)
T ss_dssp SCEEEEE---CSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEE---CCCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 4799999 66789999999999999999998864
No 467
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=74.12 E-value=1.5 Score=45.73 Aligned_cols=41 Identities=12% Similarity=0.060 Sum_probs=31.7
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHC-CCcEEEEEcCCCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYG 219 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~-G~rVllID~D~~~ 219 (532)
+.++++. |..|+||||+..-|+-.+... |++++.+|.|+..
T Consensus 138 Ge~v~Iv-GpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~ 179 (460)
T 2npi_A 138 GPRVVIV-GGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQ 179 (460)
T ss_dssp CCCEEEE-ESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTS
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCcccccCCceeEEEcCCccC
Confidence 4588888 889999999999998887654 4265678887643
No 468
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=73.96 E-value=1.5 Score=40.11 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=24.7
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
++|++. +--|+||||++..||..| |+. ++|-|.
T Consensus 7 ~iI~i~-g~~GsGk~ti~~~la~~l---g~~--~~D~~~ 39 (201)
T 3fdi_A 7 IIIAIG-REFGSGGHLVAKKLAEHY---NIP--LYSKEL 39 (201)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHHHT---TCC--EECHHH
T ss_pred eEEEEe-CCCCCCHHHHHHHHHHHh---CcC--EECHHH
Confidence 366666 889999999999998877 554 457553
No 469
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=73.91 E-value=0.82 Score=43.57 Aligned_cols=27 Identities=19% Similarity=0.074 Sum_probs=22.0
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHH
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTL 203 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~L 203 (532)
+.++.|+|. |--|+||||++..||..|
T Consensus 22 ~~~~~I~ie-G~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIE-GNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEE-CSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEE-CCCCCCHHHHHHHHHHhc
Confidence 445677777 889999999999988776
No 470
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=73.85 E-value=2.5 Score=38.62 Aligned_cols=37 Identities=11% Similarity=0.272 Sum_probs=29.9
Q ss_pred CcceEEEEEeCcCCCcHHHHHHHHHHHHH-HCCCcEEEEEcCC
Q 009574 176 KISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADV 217 (532)
Q Consensus 176 ~~~kiIav~s~KGGvGKTTlA~nLA~~LA-~~G~rVllID~D~ 217 (532)
.|||+|.|+++-||.|+ .++..|+ +.|++|.+++-+.
T Consensus 3 ~mmk~vlVtGasg~iG~-----~~~~~l~~~~g~~V~~~~r~~ 40 (221)
T 3r6d_A 3 AMYXYITILGAAGQIAQ-----XLTATLLTYTDMHITLYGRQL 40 (221)
T ss_dssp CSCSEEEEESTTSHHHH-----HHHHHHHHHCCCEEEEEESSH
T ss_pred ceEEEEEEEeCCcHHHH-----HHHHHHHhcCCceEEEEecCc
Confidence 46788999988888886 5666777 7999999998764
No 471
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=73.69 E-value=2.9 Score=43.54 Aligned_cols=69 Identities=13% Similarity=0.139 Sum_probs=41.9
Q ss_pred CCCCEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchH-------HHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009574 284 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCHFD 352 (532)
Q Consensus 284 ~~yD~VIIDtpp~~~~~~~~~~~~~~~d~viiV~~p~~~s~-------~~~~~~i~~l~~~~~~~~gvV~N~~~~~ 352 (532)
+.+.+.|+|||+-..........+..+|.+++|+......+ ....+.+..+...+++.+-+++|+++..
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEP 194 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCC
Confidence 45679999998743322222223456899999988765432 2345556666777887667889997753
No 472
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=73.64 E-value=3.6 Score=40.50 Aligned_cols=34 Identities=18% Similarity=0.073 Sum_probs=25.8
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
+-|.++ |-.|+|||++|..+|..+ .+..+..+++
T Consensus 46 ~~iLL~-GppGtGKT~la~ala~~~--~~~~~~~i~~ 79 (322)
T 1xwi_A 46 RGILLF-GPPGTGKSYLAKAVATEA--NNSTFFSISS 79 (322)
T ss_dssp SEEEEE-SSSSSCHHHHHHHHHHHT--TSCEEEEEEC
T ss_pred ceEEEE-CCCCccHHHHHHHHHHHc--CCCcEEEEEh
Confidence 566777 889999999999999876 2455555554
No 473
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=73.15 E-value=2.1 Score=39.53 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=20.0
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHH
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTL 203 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~L 203 (532)
-|.|+ |..|+||||+|..||..+
T Consensus 60 ~ili~-GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFC-GPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEE-SCGGGCHHHHHHHHHHHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh
Confidence 46666 999999999999999987
No 474
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=72.97 E-value=3.3 Score=40.53 Aligned_cols=35 Identities=20% Similarity=0.014 Sum_probs=26.9
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+++.|+ |-.|+||||++..++..+ +.+++.+++..
T Consensus 31 ~~v~i~-G~~G~GKT~L~~~~~~~~---~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVL-GLRRTGKSSIIKIGINEL---NLPYIYLDLRK 65 (357)
T ss_dssp SEEEEE-ESTTSSHHHHHHHHHHHH---TCCEEEEEGGG
T ss_pred CcEEEE-CCCCCCHHHHHHHHHHhc---CCCEEEEEchh
Confidence 355555 889999999999988765 34578888864
No 475
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=72.56 E-value=2.1 Score=39.50 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=27.8
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
||++.|+++-||.|+ .+|..|+++|.+|.++|-+.
T Consensus 1 Mk~vlVTGas~gIG~-----~~a~~l~~~G~~V~~~~r~~ 35 (230)
T 3guy_A 1 MSLIVITGASSGLGA-----ELAKLYDAEGKATYLTGRSE 35 (230)
T ss_dssp --CEEEESTTSHHHH-----HHHHHHHHTTCCEEEEESCH
T ss_pred CCEEEEecCCchHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 578999988888776 56778899999999998764
No 476
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=72.50 E-value=3 Score=33.54 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=27.1
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCC-CcEEEEEcCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMG-ARVGIFDADV 217 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G-~rVllID~D~ 217 (532)
+++.|+|+++ |+.|. .++..|.+.| ++|.++|-++
T Consensus 4 ~~~~v~I~G~-G~iG~-----~~~~~l~~~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQ-----MIAALLKTSSNYSVTVADHDL 39 (118)
T ss_dssp TCEEEEEECC-SHHHH-----HHHHHHHHCSSEEEEEEESCH
T ss_pred CcCeEEEECC-CHHHH-----HHHHHHHhCCCceEEEEeCCH
Confidence 4567888877 88776 4566788889 9999998764
No 477
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=72.48 E-value=2.9 Score=40.56 Aligned_cols=32 Identities=22% Similarity=0.112 Sum_probs=24.0
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 214 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID 214 (532)
+.|.++ |..|+||||+|..+|..+ +...+.++
T Consensus 50 ~~vLL~-Gp~GtGKT~la~ala~~~---~~~~i~v~ 81 (301)
T 3cf0_A 50 KGVLFY-GPPGCGKTLLAKAIANEC---QANFISIK 81 (301)
T ss_dssp SEEEEE-CSSSSSHHHHHHHHHHHT---TCEEEEEC
T ss_pred ceEEEE-CCCCcCHHHHHHHHHHHh---CCCEEEEE
Confidence 466677 889999999999998765 44555444
No 478
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=72.05 E-value=3.2 Score=41.41 Aligned_cols=34 Identities=26% Similarity=0.272 Sum_probs=26.7
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 216 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D 216 (532)
+.|.++ |-.|+|||++|..+|..+ |.+.+-+++-
T Consensus 52 ~~vll~-GppGtGKT~la~~ia~~~---~~~~~~~~~~ 85 (363)
T 3hws_A 52 SNILLI-GPTGSGKTLLAETLARLL---DVPFTMADAT 85 (363)
T ss_dssp CCEEEE-CCTTSSHHHHHHHHHHHT---TCCEEEEEHH
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHc---CCCEEEechH
Confidence 456666 889999999999999887 6677777653
No 479
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=72.02 E-value=4 Score=41.88 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=30.4
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
...+|+|+ |..|+||||+...|+..+...+.+|..++-+.
T Consensus 166 ~ggii~I~-GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 166 PHGIILVT-GPTGSGKSTTLYAGLQELNSSERNILTVEDPI 205 (418)
T ss_dssp SSEEEEEE-CSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred cCCeEEEE-CCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence 34577777 89999999999999888765555777776443
No 480
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=71.77 E-value=1.7 Score=42.45 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=29.6
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
-|.++ |..|+|||++|..++....+.+...+.+++..
T Consensus 27 ~vLi~-Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~ 63 (304)
T 1ojl_A 27 TVLIH-GDSGTGKELVARALHACSARSDRPLVTLNCAA 63 (304)
T ss_dssp CEEEE-SCTTSCHHHHHHHHHHHSSCSSSCCCEEECSS
T ss_pred cEEEE-CCCCchHHHHHHHHHHhCcccCCCeEEEeCCC
Confidence 34455 99999999999999988777777888888753
No 481
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=71.72 E-value=3.8 Score=41.76 Aligned_cols=33 Identities=24% Similarity=0.511 Sum_probs=25.6
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
++|+|+ |-.|+||||+|..||..+. .-+|.+|.
T Consensus 3 ~~i~i~-GptgsGKttla~~La~~~~-----~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIA-GTTGVGKSQLSIQLAQKFN-----GEVINSDS 35 (409)
T ss_dssp EEEEEE-ECSSSSHHHHHHHHHHHHT-----EEEEECCT
T ss_pred cEEEEE-CcchhhHHHHHHHHHHHCC-----CeEeecCc
Confidence 455555 7889999999999998773 34788885
No 482
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=71.48 E-value=4.8 Score=39.43 Aligned_cols=34 Identities=18% Similarity=0.115 Sum_probs=25.2
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
.+-+.++ |..|+|||++|..+|..+ +..+..+++
T Consensus 51 ~~~vLl~-GppGtGKT~la~aia~~~---~~~~~~v~~ 84 (322)
T 3eie_A 51 TSGILLY-GPPGTGKSYLAKAVATEA---NSTFFSVSS 84 (322)
T ss_dssp CCEEEEE-CSSSSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred CCeEEEE-CCCCCcHHHHHHHHHHHH---CCCEEEEch
Confidence 3456666 889999999999998775 455555554
No 483
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=71.40 E-value=2 Score=42.45 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=27.0
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+.|+ |..|+||||++..+|..+...+.++.++..+.
T Consensus 49 ~ll~-Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 84 (340)
T 1sxj_C 49 LLFY-GPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84 (340)
T ss_dssp EEEE-CSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence 5665 88999999999999999875544444555543
No 484
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A
Probab=71.38 E-value=2.9 Score=38.90 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=29.5
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
+|++.|+++-||.|+ .+|..|+++|++|.++|-+.
T Consensus 2 ~k~vlVTGas~giG~-----~~a~~l~~~G~~V~~~~r~~ 36 (239)
T 2ekp_A 2 ERKALVTGGSRGIGR-----AIAEALVARGYRVAIASRNP 36 (239)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 478999988888886 57788899999999998765
No 485
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=71.38 E-value=2.7 Score=43.83 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=21.1
Q ss_pred EEEEEeCcCCCcHHHHHHHHHHHHHH
Q 009574 180 IVAVSSCKGGVGKSTVAVNLAYTLAG 205 (532)
Q Consensus 180 iIav~s~KGGvGKTTlA~nLA~~LA~ 205 (532)
-+.++ |-.|+|||++|-.+|..+..
T Consensus 203 ~~LL~-G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 203 NPVLI-GEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp EEEEE-SCTTTTTHHHHHHHHHHHHS
T ss_pred CeEEE-CCCCCCHHHHHHHHHHHHHh
Confidence 34455 99999999999999999876
No 486
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=71.37 E-value=2.4 Score=38.54 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=21.9
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHH
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLA 204 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA 204 (532)
+.++++. |..|+||||+.-.|+..+.
T Consensus 20 Gei~~l~-GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLS-GPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEE-CSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhCC
Confidence 4588888 8999999999998887763
No 487
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=71.05 E-value=3.1 Score=38.98 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=28.9
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
||++.|+++-||.|+ .+|..|+++|++|.++|-+.
T Consensus 1 mk~vlVTGas~gIG~-----~~a~~l~~~G~~V~~~~r~~ 35 (257)
T 1fjh_A 1 MSIIVISGCATGIGA-----ATRKVLEAAGHQIVGIDIRD 35 (257)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSS
T ss_pred CCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCCc
Confidence 568899988888887 47778889999999998664
No 488
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=71.02 E-value=2.3 Score=37.47 Aligned_cols=20 Identities=35% Similarity=0.423 Sum_probs=17.1
Q ss_pred ceEEEEEeCcCCCcHHHHHHH
Q 009574 178 SNIVAVSSCKGGVGKSTVAVN 198 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~n 198 (532)
+.++++. |..|+||||++..
T Consensus 9 gei~~l~-G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLI-GSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEE-CCTTSCHHHHHHH
T ss_pred CEEEEEE-CCCCCCHHHHHHH
Confidence 3588888 9999999999886
No 489
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=70.95 E-value=3.3 Score=36.24 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=21.9
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHH
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTL 203 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~L 203 (532)
+.++++. |..|+||||+...|+..+
T Consensus 33 Ge~v~L~-G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLN-GDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhC
Confidence 3588888 889999999999999887
No 490
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=70.75 E-value=4.9 Score=41.86 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=31.1
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCc-EEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR-VGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~r-VllID~D~ 217 (532)
.++|+|+ |--||||++.-|+..|...|++ ++.+....
T Consensus 118 ~~vI~VT---GTnGKTTTt~ml~~iL~~~G~~p~~~igg~~ 155 (475)
T 1p3d_A 118 RHGIAVA---GTHGKTTTTAMISMIYTQAKLDPTFVNGGLV 155 (475)
T ss_dssp SEEEEEE---SSSCHHHHHHHHHHHHHHTTCCCEEEEEEEE
T ss_pred CCEEEEE---CCCCHHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence 4799999 6678999999999999999987 66666554
No 491
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=70.63 E-value=3.1 Score=39.61 Aligned_cols=36 Identities=17% Similarity=0.424 Sum_probs=30.4
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEcCC
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 217 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~D~ 217 (532)
++|++.|+++-||.|+ .+|..|+++|.+|.++|-+.
T Consensus 15 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 50 (266)
T 3p19_A 15 MKKLVVITGASSGIGE-----AIARRFSEEGHPLLLLARRV 50 (266)
T ss_dssp CCCEEEEESTTSHHHH-----HHHHHHHHTTCCEEEEESCH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 4579999999898887 67888999999999998653
No 492
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=70.63 E-value=3.9 Score=43.26 Aligned_cols=34 Identities=32% Similarity=0.507 Sum_probs=29.1
Q ss_pred cceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 009574 177 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 213 (532)
Q Consensus 177 ~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllI 213 (532)
..++|+|+ |--||||++.-++..|...|+++.++
T Consensus 121 ~~~vIaVT---GTnGKTTTt~li~~iL~~~G~~~~~~ 154 (524)
T 3hn7_A 121 SRHVIAVA---GTHGKTTTTTMLAWILHYAGIDAGFL 154 (524)
T ss_dssp GSEEEEEE---CSSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred cCcEEEEE---CCCCHHHHHHHHHHHHHHcCCCceEE
Confidence 35799999 66799999999999999999887543
No 493
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=70.58 E-value=3.7 Score=42.80 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=28.0
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEE
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI 212 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVll 212 (532)
.++|+|+ |--||||++.-++..|...|++|.+
T Consensus 114 ~~vI~VT---GTnGKTTTt~ml~~iL~~~G~~~~~ 145 (469)
T 1j6u_A 114 KEEFAVT---GTDGKTTTTAMVAHVLKHLRKSPTV 145 (469)
T ss_dssp CCEEEEE---CSSSHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCEEEEE---CCCCHHHHHHHHHHHHHHcCCCceE
Confidence 4699999 6678999999999999999998743
No 494
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=70.21 E-value=2.3 Score=39.20 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.5
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHH
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTL 203 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~L 203 (532)
+++++++ |..|+||||+.-.|+..+
T Consensus 23 G~~~~lv-GpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVIC-GPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEE-CSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhC
Confidence 3578888 889999999999998876
No 495
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=70.03 E-value=3.5 Score=40.39 Aligned_cols=29 Identities=31% Similarity=0.266 Sum_probs=24.5
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcE
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARV 210 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rV 210 (532)
+.+++|+ |..|+||||+...|+..+ .| +|
T Consensus 126 Ge~vaIv-GpsGsGKSTLl~lL~gl~--~G-~I 154 (305)
T 2v9p_A 126 KNCLAFI-GPPNTGKSMLCNSLIHFL--GG-SV 154 (305)
T ss_dssp CSEEEEE-CSSSSSHHHHHHHHHHHH--TC-EE
T ss_pred CCEEEEE-CCCCCcHHHHHHHHhhhc--Cc-eE
Confidence 3588999 889999999999999988 55 44
No 496
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=69.74 E-value=2.9 Score=41.36 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=20.5
Q ss_pred eEEEEEeCcCCCcHHHHHHHHHHHH
Q 009574 179 NIVAVSSCKGGVGKSTVAVNLAYTL 203 (532)
Q Consensus 179 kiIav~s~KGGvGKTTlA~nLA~~L 203 (532)
..+.++ |..|+||||++-.+|..+
T Consensus 52 ~~~ll~-Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLA-GPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEE-SSTTSSHHHHHHHHHHHH
T ss_pred CeEEEE-CCCCCcHHHHHHHHHHHh
Confidence 356666 999999999999999877
No 497
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=69.70 E-value=4.8 Score=40.46 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=30.9
Q ss_pred ccCcceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCcEEEEEc
Q 009574 174 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 215 (532)
Q Consensus 174 ~~~~~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~rVllID~ 215 (532)
-..||||+.++. ||-|=-+-+..||.+|.++|++|.++-.
T Consensus 17 ~~~m~rIl~~~~--~~~GHv~p~l~La~~L~~~Gh~V~v~~~ 56 (415)
T 3rsc_A 17 GRHMAHLLIVNV--ASHGLILPTLTVVTELVRRGHRVSYVTA 56 (415)
T ss_dssp --CCCEEEEECC--SCHHHHGGGHHHHHHHHHTTCEEEEEEC
T ss_pred cccCCEEEEEeC--CCccccccHHHHHHHHHHCCCEEEEEeC
Confidence 345666665543 6888888899999999999999999873
No 498
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=69.68 E-value=3.7 Score=45.90 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=27.9
Q ss_pred EEEEeCcCCCcHHHHHHHHHHHHHH-CCCcEEEEE
Q 009574 181 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFD 214 (532)
Q Consensus 181 Iav~s~KGGvGKTTlA~nLA~~LA~-~G~rVllID 214 (532)
+.+..|-.|+|||++.+.+...|.+ .+.+|+++-
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a 411 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCA 411 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEc
Confidence 4455588999999999999888876 688998875
No 499
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=69.32 E-value=1.9 Score=39.99 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=15.2
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHH-HHH
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLA-YTL 203 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA-~~L 203 (532)
+++|+++ |-.|+||||++..|+ ..+
T Consensus 27 G~ii~l~-Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLS-SPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEE-CSCC----CHHHHHHC---
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhcCC
Confidence 4688888 889999999999887 654
No 500
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=69.22 E-value=5.5 Score=41.69 Aligned_cols=37 Identities=22% Similarity=0.211 Sum_probs=31.0
Q ss_pred ceEEEEEeCcCCCcHHHHHHHHHHHHHHCCCc-EEEEEcCC
Q 009574 178 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR-VGIFDADV 217 (532)
Q Consensus 178 ~kiIav~s~KGGvGKTTlA~nLA~~LA~~G~r-VllID~D~ 217 (532)
.++|+|+ |--||||++.-|+..|...|++ ++.+....
T Consensus 119 ~~vI~VT---GTnGKTTTt~ml~~iL~~~G~~p~~~igg~~ 156 (491)
T 2f00_A 119 RHGIAIA---GTHGKTTTTAMVSSIYAEAGLDPTFVNGGLV 156 (491)
T ss_dssp SEEEEEE---SSSCHHHHHHHHHHHHHHTTCCCEEEEEEEE
T ss_pred CCEEEEE---CCCCHHHHHHHHHHHHHhCCCCCEEEECCee
Confidence 4799999 6678999999999999999986 66666554
Done!