Query 009579
Match_columns 531
No_of_seqs 194 out of 1848
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 14:49:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009579.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009579hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1292 Xanthine/uracil transp 100.0 2.2E-92 4.8E-97 729.9 33.3 500 24-531 1-508 (510)
2 COG2233 UraA Xanthine/uracil p 100.0 2E-79 4.3E-84 642.8 35.7 410 23-489 4-436 (451)
3 PRK11412 putative uracil/xanth 100.0 2.6E-74 5.6E-79 611.7 40.2 402 35-489 8-430 (433)
4 PRK10720 uracil transporter; P 100.0 2.7E-68 5.8E-73 568.6 38.2 391 22-489 1-408 (428)
5 TIGR03616 RutG pyrimidine util 100.0 1.6E-67 3.4E-72 562.5 40.0 403 21-489 16-428 (429)
6 TIGR00801 ncs2 uracil-xanthine 100.0 1.8E-65 3.8E-70 546.1 38.4 392 31-485 1-415 (415)
7 TIGR03173 pbuX xanthine permea 100.0 5.4E-65 1.2E-69 541.7 36.7 388 41-487 1-406 (406)
8 PF00860 Xan_ur_permease: Perm 100.0 1.2E-61 2.6E-66 513.2 25.3 371 35-440 1-386 (389)
9 COG2252 Xanthine/uracil/vitami 100.0 3.5E-33 7.7E-38 291.8 30.4 384 20-487 4-412 (436)
10 TIGR00843 benE benzoate transp 99.9 3.7E-23 8E-28 216.1 32.8 314 36-408 22-348 (395)
11 COG0659 SUL1 Sulfate permease 99.9 4.9E-22 1.1E-26 218.0 31.7 317 34-412 21-370 (554)
12 PF03594 BenE: Benzoate membra 99.9 1.6E-19 3.4E-24 185.9 31.7 313 36-407 6-331 (378)
13 PRK11660 putative transporter; 99.8 1.4E-18 3E-23 192.8 30.7 321 33-401 28-389 (568)
14 TIGR00815 sulP high affinity s 99.8 2E-18 4.2E-23 191.5 30.5 323 34-401 14-369 (563)
15 COG3135 BenE Uncharacterized p 99.8 7.8E-18 1.7E-22 169.8 29.5 313 35-407 20-346 (402)
16 PF00916 Sulfate_transp: Sulfa 99.5 3.4E-14 7.4E-19 144.0 12.0 239 150-416 1-273 (280)
17 KOG0236 Sulfate/bicarbonate/ox 99.4 7.9E-11 1.7E-15 132.6 26.5 315 51-403 91-440 (665)
18 TIGR00834 ae anion exchange pr 98.6 4.1E-05 8.8E-10 88.2 30.3 314 74-416 403-799 (900)
19 KOG1172 Na+-independent Cl/HCO 98.4 0.00019 4.1E-09 81.2 28.2 314 72-416 392-775 (876)
20 PF11840 DUF3360: Protein of u 98.0 0.003 6.4E-08 65.4 23.2 347 22-417 53-417 (492)
21 PF00955 HCO3_cotransp: HCO3- 96.9 0.0006 1.3E-08 74.6 3.0 186 216-417 277-481 (510)
22 KOG4085 Uncharacterized conser 84.8 2.3 4.9E-05 38.7 5.7 123 359-505 29-161 (175)
23 TIGR00843 benE benzoate transp 80.0 29 0.00063 37.3 12.9 140 60-236 247-393 (395)
24 COG0659 SUL1 Sulfate permease 76.5 35 0.00076 38.4 12.8 120 287-418 25-155 (554)
25 TIGR00815 sulP high affinity s 75.8 32 0.0007 38.6 12.5 116 287-413 18-149 (563)
26 PF01914 MarC: MarC family int 67.9 1.2E+02 0.0026 29.4 13.3 30 156-185 164-200 (203)
27 PRK11660 putative transporter; 63.9 71 0.0015 36.0 11.9 114 287-411 33-153 (568)
28 PF03594 BenE: Benzoate membra 59.0 53 0.0011 35.0 9.0 115 281-399 2-127 (378)
29 COG1457 CodB Purine-cytosine p 56.9 3E+02 0.0065 30.2 23.8 65 296-364 240-307 (442)
30 PF13142 DUF3960: Domain of un 55.8 5.9 0.00013 32.3 1.1 43 481-523 24-73 (87)
31 TIGR00822 EII-Sor PTS system, 52.9 47 0.001 33.7 7.3 40 379-419 163-202 (265)
32 PF05977 MFS_3: Transmembrane 45.4 4.5E+02 0.0097 29.3 14.2 129 29-172 215-345 (524)
33 TIGR03173 pbuX xanthine permea 45.0 2.3E+02 0.005 30.3 11.6 76 73-171 254-329 (406)
34 PF13792 Sulfate_tra_GLY: Sulf 43.4 29 0.00062 28.9 3.4 62 33-105 15-76 (84)
35 PRK11412 putative uracil/xanth 43.2 71 0.0015 34.8 7.3 76 73-171 276-351 (433)
36 COG3817 Predicted membrane pro 38.1 3.6E+02 0.0078 27.4 10.5 96 281-380 163-262 (313)
37 TIGR00801 ncs2 uracil-xanthine 34.0 2E+02 0.0044 31.0 9.0 76 74-172 271-346 (415)
38 COG4129 Predicted membrane pro 28.7 6.8E+02 0.015 26.3 11.5 64 75-152 14-77 (332)
39 PRK10720 uracil transporter; P 27.0 3.2E+02 0.007 29.6 9.1 76 74-172 262-337 (428)
40 COG2095 MarC Multiple antibiot 24.2 2.3E+02 0.005 27.6 6.6 50 133-185 140-197 (203)
41 COG3715 ManY Phosphotransferas 23.6 3.2E+02 0.0069 27.8 7.6 40 379-419 163-202 (265)
42 PRK11663 regulatory protein Uh 22.8 7.6E+02 0.016 26.1 11.1 37 53-90 44-80 (434)
43 PRK10739 putative antibiotic t 22.3 2.8E+02 0.0061 26.8 6.8 30 156-185 156-192 (197)
44 PF00860 Xan_ur_permease: Perm 21.8 1.6E+02 0.0035 31.3 5.6 52 366-417 96-147 (389)
45 TIGR00834 ae anion exchange pr 21.5 1.5E+03 0.032 27.4 13.7 188 281-487 366-615 (900)
46 PF11840 DUF3360: Protein of u 20.9 1.1E+03 0.023 25.6 11.3 157 281-443 56-224 (492)
No 1
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.2e-92 Score=729.88 Aligned_cols=500 Identities=60% Similarity=1.097 Sum_probs=472.0
Q ss_pred cccccCCCCChHHHHHHHHHHHHHhhceeehhHHHhhhhcCCChHHH-HHHHHHHHHHHHHHHHHHHHhCCCcceeEccc
Q 009579 24 ISYCITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEK-AKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGS 102 (531)
Q Consensus 24 ~~~~~~~~pp~~~~i~~GlQh~lam~~~~i~vP~il~~a~gl~~~~~-~~li~atll~sGi~Tllq~~~G~rlPiv~Gps 102 (531)
+.|+++|+|||...+++|+||++.|++.++++|.+++++++.++++. +.+||+.++++||.|++|++||.|||+++|+|
T Consensus 1 l~y~i~d~P~w~~~i~lgfQhyl~~lg~~v~iP~~lv~~m~~g~~~~~~~lIsT~~f~sGI~TllQt~fG~RLp~v~G~S 80 (510)
T KOG1292|consen 1 LHYCINDNPPWPEIILLGFQHYLVCLGTTVLIPFLLVPLMCGGDEEKAVQLISTIFFVSGITTLLQTTFGTRLPLVQGPS 80 (510)
T ss_pred CccCCCCCCCchHHHHhccchHHHHhhhhhhhhhhhcccccCChHHHHHHHHHHHhhhccHHHHHHHHhhcccccccccc
Confidence 36999999999999999999999999999999999999999999988 99999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCCCCCC---CCCchhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCcccHHHHHHHHHHHh
Q 009579 103 YTFVPSTISIILAGRFSNYS---GDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGL 179 (531)
Q Consensus 103 fa~i~~~~~i~~~~g~~~~~---~~~~~~~~~~~~~~~gavlvaGvl~illg~~g~~~~l~~~~Pp~V~G~~i~lIGl~l 179 (531)
|+|+++..++.....+.+.. .++...|.+.+++++|+.++++.+++++|++|+.+++.|++.|+.+.+.+.++|+++
T Consensus 81 fafl~p~~~i~~~~~~~~~~~~~~~~~~~~~~~mr~iqGAlivas~vqiilG~sGl~g~l~rfi~Plti~P~v~lvgl~l 160 (510)
T KOG1292|consen 81 FAFLPPALAIISLPRFTCITTPHETDTERFQHRMREIQGALIVASLVQIILGFSGLWGNLLRFIGPLTIVPLVALVGLGL 160 (510)
T ss_pred eehhhHHHHHHhccccCCCCCcccchhHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHhhcCChhhhhHHHHHhhhh
Confidence 99999999998765555432 122347999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcchhhhhHHHHHHHHHHHHHh--hhhhhh--ccccchhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCcccc
Q 009579 180 YEFGFPGVAKCVEIGLPQLVIIVFISQY--LPHVIK--RGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASC 255 (531)
Q Consensus 180 ~~~~~~~~~~~~~i~l~~l~~~i~~~~~--~~~~~~--~~~~~lr~~aiLigivvG~i~a~~~g~~~~~~~~~~~~~~~~ 255 (531)
+..+.+.++.+|.++++.+++++++++| .++... .+++.++++++++++.+.|++|.+++..|.|+.++..++.+|
T Consensus 161 ~~~~~~~~~~~weI~l~~~llli~fsqy~~~~~~~~~~~~~~if~~f~vll~i~ivW~~~~iLT~tgay~~~~~~t~~~~ 240 (510)
T KOG1292|consen 161 FQDGFPKLGKHWEISLPEILLLILFSQYASLPKKGFGSRRIQIFSRFPVLLAIAIVWLYCFILTITGAYPYKPTTTQSSC 240 (510)
T ss_pred HHhhhhhhhhheeecHHHHHHHHHHHHhhhcccccccccccchHhhccHHHHHHHHHHHHHHHHhccccCCCccccCCcc
Confidence 9999999999999999999999999999 533222 346789999999999999999999999999999888899999
Q ss_pred ccCcCCccCCCCcccCCcccccccccccHHHHHHHHHHHHHHHHHhHHHHHHHHhHhcCCCCCCcCCCcchhhhhhHHHh
Q 009579 256 RTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILL 335 (531)
Q Consensus 256 ~~d~~~~v~~ap~~~~P~~~~~g~P~f~~~~il~~~~~~iv~~~esig~~~av~~~~~~~~~~~~~~~r~l~adGl~~il 335 (531)
|+|.+..++++||+.+|+|++||.|.||++....|+...+++++||+|++.++++.+.+++++++.+|||+..||+++++
T Consensus 241 RTD~~~vi~~apWi~vPyP~QwG~P~f~~~~~f~m~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGig~lL 320 (510)
T KOG1292|consen 241 RTDRNGVISSAPWIRVPYPFQWGPPTFSAGLVFAMMAASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWEGIGSLL 320 (510)
T ss_pred cccHhhhhccCCceeecCCCccCCCcccHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhHHHHH
Confidence 99998888999999999999999999999999999999999999999999999999998888888999999999999999
Q ss_pred hhhcCCCCCcccccchhhhhhhccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhhhhh
Q 009579 336 SGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQF 415 (531)
Q Consensus 336 aglfG~~~~tt~s~~n~g~i~~Tgv~SR~~~~~ag~~li~lg~~pk~~~li~~IP~~Vlgg~li~~fg~i~~~Gi~~l~~ 415 (531)
+|+||+..++|.++||+|+++.||++||++++++|.+|++++++.||++++++||.|++||++++.|+++...|+++++.
T Consensus 321 ~gl~G~gtG~Tt~~ENigll~vTKVgSRrvvQ~aa~fmI~~~i~gKFgA~fAsIP~piv~~l~c~~~~mv~avgLSnLQf 400 (510)
T KOG1292|consen 321 AGLFGTGTGSTTSVENIGLLGVTKVGSRRVVQIAAGFMIFFGIFGKFGAFFASIPDPIVGGLLCILFGMVGAVGLSNLQF 400 (510)
T ss_pred HHhhCCCccceeeccceeeEeeeeeeeeeehhhhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhhhhhee
Confidence 99999999988888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccEEeehhhHHhhhchhhhhhhhhhhcCCCCccccccccccchhcccccchHHHHHHHHHHhhhcCCCCccchh
Q 009579 416 CNLNSFRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLHKKDGQVRK 495 (531)
Q Consensus 416 ~~~~d~rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~p~~~~~~~lp~~~~~~l~~gi~~g~l~ailLn~~~~~~~~~~~~ 495 (531)
+|++..||++|+|+|+++|+.+|+||+++ .+|.+++.+|++++++.++++.+.+|+++|++||+++|+ ++||
T Consensus 401 ~dlns~RNl~IlG~Sif~gLsip~yF~~~-----~~~v~Tg~~~~d~ilnvll~~~m~Vggi~A~~LDnt~~g---atr~ 472 (510)
T KOG1292|consen 401 VDLNSSRNLFILGFSIFLGLSIPQYFEQY-----PGPVHTGNGWFDDILNVLLSSRMLVGGILAFILDNTLPG---ATRE 472 (510)
T ss_pred eccccccchhhhhHHHHHhccHHHHHHhC-----CCccccCcHHHHHHHHHHhhHHHHHHHHHhhhccccCCC---CChH
Confidence 99999999999999999999999999995 568999999999999999999999999999999999994 3799
Q ss_pred hcccccccccccCCCCCCCCcccCCCccccccCCCC
Q 009579 496 DRGRHWWDKFWSFKGDTRSEEFYSLPFNLNKYFPSV 531 (531)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~ 531 (531)
|||+++|+++++.+.|.|++|+|+||+++||+||+.
T Consensus 473 ~RG~~~w~~~~~~~~d~~~~e~Y~lP~~~n~~f~~~ 508 (510)
T KOG1292|consen 473 QRGLRWWDKFETFNGDVRNEEFYSLPFNLNRFFPRI 508 (510)
T ss_pred hcCCcchhccccccCCccccccccCcHHHHhhcccC
Confidence 999999999999999999999999999999999974
No 2
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=100.00 E-value=2e-79 Score=642.75 Aligned_cols=410 Identities=28% Similarity=0.480 Sum_probs=380.6
Q ss_pred CcccccCCCCChHHHHHHHHHHHHHhhceeehhHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCCccee
Q 009579 23 SISYCITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAV 98 (531)
Q Consensus 23 ~~~~~~~~~pp~~~~i~~GlQh~lam~~~~i~vP~il~~a~gl~~~~~~~li~atll~sGi~Tllq~~----~G~rlPiv 98 (531)
+.....||++|+.|.+++|+||+++|+++++++|++++.+.+++++|+++++|+++++||++|++|.+ +|.|+|++
T Consensus 4 ~~~~~~~~~~~~~~~~~lglQH~lamfg~~V~VPlivg~a~~l~~~~~~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~~ 83 (451)
T COG2233 4 LIYVLVDERLPLGKLLLLGLQHLLAMFGATVLVPLLVGLALGLSAEDTAYLISADLLASGIGTLLQLLGTGPGGSGLPSY 83 (451)
T ss_pred cccCcccccCChHHHHHHHHHHHHHHHhcchHhhHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCee
Confidence 34455778889999999999999999999999999999999999999999999999999999999997 46699999
Q ss_pred EccccchHHHHHHHHHhcCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhhhhhHH-HHHhhcCcccHHHHHHHHHH
Q 009579 99 MGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWR-NVTRFLSPLSVVPLISLVGF 177 (531)
Q Consensus 99 ~Gpsfa~i~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~gavlvaGvl~illg~~g~~~-~l~~~~Pp~V~G~~i~lIGl 177 (531)
+|+||++++++.++.++++ ++.+.++|+++++|+++++++.. ++ |++|+|||+|+|.++++||+
T Consensus 84 lG~sFafi~p~i~~~~~~g-------------~~~~~~~G~ii~ag~~~~li~~~--~~~~l~rlfPPvVtG~Vi~~IGl 148 (451)
T COG2233 84 LGSSFAFVAPMIAIGGTTG-------------DGIAALLGGIIAAGLVYFLISPI--VKIRLARLFPPVVTGPVVLVIGL 148 (451)
T ss_pred EechHHHHHHHHHHHhccC-------------CchHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCCCceEEeEeeeehh
Confidence 9999999999998876543 25889999999999999999874 56 99999999999999999999
Q ss_pred HhhhhhccCcch--------------hhhhHHHHHHHHHHHHHhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhccC
Q 009579 178 GLYEFGFPGVAK--------------CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGA 243 (531)
Q Consensus 178 ~l~~~~~~~~~~--------------~~~i~l~~l~~~i~~~~~~~~~~~~~~~~lr~~aiLigivvG~i~a~~~g~~~~ 243 (531)
+|++.+++++++ +..+++.+++++++++++.|+ ++|+.++|+|+++||++++.+|.
T Consensus 149 sL~~vai~~~~G~~~~~~~~~~~~~~~l~la~~tl~~il~~~~f~~g-------~~~~i~ILiGlv~G~~la~~~G~--- 218 (451)
T COG2233 149 SLAPVAINMAGGGPGAAGNPDFGSLENLGLALVTLLIILLINRFGKG-------FLRRIPILIGLVVGYLLALFMGM--- 218 (451)
T ss_pred hhHHHHHHHhhCCCCCCCCcccCchhHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHhCC---
Confidence 999999886541 356888888888888888765 58999999999999999999974
Q ss_pred CCCCCccCccccccCcCCccCCCCcccCCcccccccccccHHHHHHHHHHHHHHHHHhHHHHHHHHhHhcCCCCCCcCCC
Q 009579 244 YNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLS 323 (531)
Q Consensus 244 ~~~~~~~~~~~~~~d~~~~v~~ap~~~~P~~~~~g~P~f~~~~il~~~~~~iv~~~esig~~~av~~~~~~~~~~~~~~~ 323 (531)
+|+++ +.++||+++|.+++|+. +|||.+++++++++++.++|++||+.|++++++++..++++++
T Consensus 219 -------------vdf~~-v~~a~w~~~P~~~~fg~-~F~~~ail~m~~v~iV~~~E~~G~i~A~~~itg~~~~~~~~l~ 283 (451)
T COG2233 219 -------------VDFSG-VAEAPWFALPTPFYFGM-AFDWGAILTMLPVAIVTIVEHTGDITATGEITGRDLDGKPRLR 283 (451)
T ss_pred -------------cCccc-cccCceeeCCcccCCCe-eecHHHHHHHHHHHHHHHHHHhhhhhhHHhHhCCcCccCcccc
Confidence 57776 78999999999999998 9999999999999999999999999999999998777779999
Q ss_pred cchhhhhhHHHhhhhcCCCCCcccccchhhhhhhccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHHHHHH
Q 009579 324 RGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFA 403 (531)
Q Consensus 324 r~l~adGl~~ilaglfG~~~~tt~s~~n~g~i~~Tgv~SR~~~~~ag~~li~lg~~pk~~~li~~IP~~Vlgg~li~~fg 403 (531)
|++++||++++++|+||++|.|+|+ ||+|+++.||++||++..+++++++++|++||+++++++||.||+||+.+++||
T Consensus 284 rg~~aDGlat~iag~fg~~p~Ttfa-qNiGvv~lT~v~Sr~V~~~aavili~lgl~pk~~al~~sIP~pVlGGa~ivmFG 362 (451)
T COG2233 284 RGLLADGLATLIAGLFGGFPNTTFA-QNIGVVALTGVYSRYVIAGAAVILILLGLFPKFGALIQSIPSPVLGGAMLVLFG 362 (451)
T ss_pred cceeeccHHHHHHHhcCCCCCCchh-hceeeeeeccCChhHHHHHHHHHHHHHHhhHHHHHHHHhCChhhhhHHHHHHHH
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhccccCcc-cEEeehhhHHhhhch---hhhhhhhhhhcCCCCccccccccccchhcccccchHHHHHHH
Q 009579 404 YVGAGGLSFLQFCNLNSFR-VKFILGFSIFIGLSV---PQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVA 479 (531)
Q Consensus 404 ~i~~~Gi~~l~~~~~~d~r-n~~ivg~sl~~Gl~~---p~~~~~~~~~~~~~p~~~~~~~lp~~~~~~l~~gi~~g~l~a 479 (531)
++..+|+|++.+.|+|++| |.+|+++++.+|++. |+++++ +|++++.+++||++.|+++|
T Consensus 363 ~Ia~sGir~l~~~~~~~~~~Nl~IvAvsl~~Gig~~~~p~~~~~----------------~p~~~~~l~~sGia~g~i~A 426 (451)
T COG2233 363 MIAASGIRILIRNKVDRSRRNLLIVAVSLGLGIGVGAVPEVFLQ----------------LPAWLRPLLSSGIALGTLTA 426 (451)
T ss_pred HHHHHHHHHHHhcccccCccceeeehHHHHhCcchhcCchhhhh----------------CcHHHHHHHhccHHHHHHHH
Confidence 9999999999999998756 999999999999994 888877 69999999999999999999
Q ss_pred HHHhhhcCCC
Q 009579 480 FFLDNTLHKK 489 (531)
Q Consensus 480 ilLn~~~~~~ 489 (531)
|+||+++|+.
T Consensus 427 IvLNlll~~~ 436 (451)
T COG2233 427 IVLNLLLPGE 436 (451)
T ss_pred HHHHHhcccc
Confidence 9999999975
No 3
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=100.00 E-value=2.6e-74 Score=611.66 Aligned_cols=402 Identities=18% Similarity=0.326 Sum_probs=354.0
Q ss_pred HHHHHHHHHHHHHhhceeehhHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceeEccccchHHHHHHHHH
Q 009579 35 PEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIIL 114 (531)
Q Consensus 35 ~~~i~~GlQh~lam~~~~i~vP~il~~a~gl~~~~~~~li~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~i~~~~~i~~ 114 (531)
++++++|+||+++|+++++++|+++++++|+|++|+++++|++++++|++|++|+++|+|||++||+||+|+++++++..
T Consensus 8 ~~~~~lglQhvl~m~~~~i~vPliva~a~gl~~~~~~~li~~~l~~sGIaTllQ~~~G~rlPiv~G~Sf~~~~~~~~i~~ 87 (433)
T PRK11412 8 RESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITL 87 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCchHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999998863
Q ss_pred hcCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCcccHHHHHHHHHHHhhhhhccCcch-----
Q 009579 115 AGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAK----- 189 (531)
Q Consensus 115 ~~g~~~~~~~~~~~~~~~~~~~~gavlvaGvl~illg~~g~~~~l~~~~Pp~V~G~~i~lIGl~l~~~~~~~~~~----- 189 (531)
.....+ ..+..-++..+|+++++|++++++|++++++|++|+|||+|+|+++++||++|++.+++++.+
T Consensus 88 ~~~~~g------~~~~~~~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~~a~~~~~G~~~~~ 161 (433)
T PRK11412 88 GEASRG------TPINDIATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLGAQLTTIFFKGMLGLPFGI 161 (433)
T ss_pred cccccC------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHHHhhHHHHHHHhcCCCccC
Confidence 211000 001123445566799999999999999999999999999999999999999999998875421
Q ss_pred ----------hhhhHHHHHHHHHHHHHhhhhhhhccccchhhhHHHHHHHHHHHHHH-HHHhccCCCCCCccCccccccC
Q 009579 190 ----------CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAH-LLTVGGAYNDAAPKTQASCRTD 258 (531)
Q Consensus 190 ----------~~~i~l~~l~~~i~~~~~~~~~~~~~~~~lr~~aiLigivvG~i~a~-~~g~~~~~~~~~~~~~~~~~~d 258 (531)
++.+++.++.+++.++++.| +++|++++|+|+++||+++. .++. |
T Consensus 162 ~~~~~~~~~~~~~~a~~~l~~il~~~~~~~-------g~~~~~svLiGiv~G~v~a~~~~g~-----------------d 217 (433)
T PRK11412 162 ADPNGKIQLPPFGLSVAVMCLVLAMIIFLP-------QRIARYSLLVGTIVGWILWAFCFPS-----------------S 217 (433)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHHhCC-----------------C
Confidence 12355556666666666554 46899999999999999865 4431 4
Q ss_pred cCCccCCCCcccCCccccccccc-ccHHHHHHHHHHHHHHHHHhHHHHHHHHhHhcCCCCCCcCCCcchhhhhhHHHhhh
Q 009579 259 RAGLIDAAPWIRVPWPFQWGAPS-FDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSG 337 (531)
Q Consensus 259 ~~~~v~~ap~~~~P~~~~~g~P~-f~~~~il~~~~~~iv~~~esig~~~av~~~~~~~~~~~~~~~r~l~adGl~~ilag 337 (531)
++. +.+++|. +++||.|. ||+++++++++++++.+.|++||+.++++..+++..++++++|++.+||++|+++|
T Consensus 218 ~~~-v~~a~w~----~~pfG~P~~F~~~~il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi~s~lag 292 (433)
T PRK11412 218 HSL-SGELHWQ----WFPLGSGGALEPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITV 292 (433)
T ss_pred cch-hccCCce----eecCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhccHHHHHHH
Confidence 443 4678884 35689995 99999999999999999999999999999988765557899999999999999999
Q ss_pred hcCCCCCcccccchhhhhhhccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 009579 338 LFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCN 417 (531)
Q Consensus 338 lfG~~~~tt~s~~n~g~i~~Tgv~SR~~~~~ag~~li~lg~~pk~~~li~~IP~~Vlgg~li~~fg~i~~~Gi~~l~~~~ 417 (531)
+||++|+|+|+ ||+|+++.||++||+++.++|++++++||+||+++++++||.||+||+++++|+++..+|+|+++++|
T Consensus 293 lfg~~p~tt~s-qNvGvi~~TgV~SR~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~~~Fg~I~~~Gi~~l~~~~ 371 (433)
T PRK11412 293 PLAVIPFSPFV-SSIGLLTQTGDYRRRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVMLVSYLPLLGSALVFSQQIT 371 (433)
T ss_pred hcCCCCCCchh-hhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccEEeehhhHHhhhch---h-hhhhhhhhhcCCCCccccccccccchhcccccchHHHHHHHHHHhhhcCCC
Q 009579 418 LNSFRVKFILGFSIFIGLSV---P-QYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLHKK 489 (531)
Q Consensus 418 ~~d~rn~~ivg~sl~~Gl~~---p-~~~~~~~~~~~~~p~~~~~~~lp~~~~~~l~~gi~~g~l~ailLn~~~~~~ 489 (531)
+| +||++|+|+++.+|++. | +++++ +|++++++++||+++|+++|++||+++|++
T Consensus 372 ~~-~rn~~ivg~sl~~Glg~~~~p~~~~~~----------------~P~~~~~~l~sgi~~g~l~AilLn~~~~~~ 430 (433)
T PRK11412 372 FT-ARNIYRLALPLFVGIFLMALPPVYLQD----------------LPLTLRPLLSNGLLVGILLAVLMENLIPWE 430 (433)
T ss_pred CC-cccchhhHHHHHHHhhHHhCCHHHHHH----------------ChHHHHHHHcCcHHHHHHHHHHHHhhcCcc
Confidence 97 79999999999999996 6 58877 799999999999999999999999999974
No 4
>PRK10720 uracil transporter; Provisional
Probab=100.00 E-value=2.7e-68 Score=568.59 Aligned_cols=391 Identities=22% Similarity=0.369 Sum_probs=345.6
Q ss_pred CCcccccCCCCChHHHHHHHHHHHHHhhceeehhHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhC-CCcceeEc
Q 009579 22 PSISYCITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFG-TRLPAVMG 100 (531)
Q Consensus 22 ~~~~~~~~~~pp~~~~i~~GlQh~lam~~~~i~vP~il~~a~gl~~~~~~~li~atll~sGi~Tllq~~~G-~rlPiv~G 100 (531)
++..|++|||||+++.+++|+||+++|+++++++|+++ |+|+++ +++++|++|++|++.+ .|+|+++|
T Consensus 1 ~~~~~~~~~~~p~~~~~~lglQhvl~m~~~~i~~Pli~----gl~~~~-------~l~~sGi~TliQ~~~~g~rlP~~~G 69 (428)
T PRK10720 1 TRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPILF----HINPAT-------VLLFNGIGTLLYLFICKGKIPAYLG 69 (428)
T ss_pred CCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCHHH-------HHHHHHHHHHHHHHhccCccceEEe
Confidence 35789999999999999999999999999999999985 788853 7899999999999865 59999999
Q ss_pred cccchHHHHHHHHHhcCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhhh--hh-HHHHHhhcCcccHHHHHHHHHH
Q 009579 101 GSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFS--GL-WRNVTRFLSPLSVVPLISLVGF 177 (531)
Q Consensus 101 psfa~i~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~gavlvaGvl~illg~~--g~-~~~l~~~~Pp~V~G~~i~lIGl 177 (531)
+||+|++++..+.. ++|++++|+++++|+++++++++ |+ ++|++|+|||.|+|.++++||+
T Consensus 70 ~sfa~i~~~~~~~~----------------~~~~~~lgav~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIGl 133 (428)
T PRK10720 70 SSFAFISPVLLLLP----------------LGYEVALGGFIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIGL 133 (428)
T ss_pred CcHHHHHHHHHHHH----------------ccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHH
Confidence 99999998877652 26899999999999999999986 22 6789999999999999999999
Q ss_pred HhhhhhccCcc-----------hhhhhHHHHHHHHHHHHHhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhccCCCC
Q 009579 178 GLYEFGFPGVA-----------KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYND 246 (531)
Q Consensus 178 ~l~~~~~~~~~-----------~~~~i~l~~l~~~i~~~~~~~~~~~~~~~~lr~~aiLigivvG~i~a~~~g~~~~~~~ 246 (531)
++.+.++++.+ .++.+++.+++++++++++.| +++|++++|+|+++||++++.+|.
T Consensus 134 ~L~~~~~~~~g~~~~~~~~~~~~~~~lalv~l~iil~~~~~~k-------g~~~~~~iLigIvvG~ila~~lG~------ 200 (428)
T PRK10720 134 ELAGVAAGMAGLLPAEGQTPDSKTIIISMVTLAVTVLGSVLFR-------GFLAIIPILIGVLVGYALSFAMGM------ 200 (428)
T ss_pred HhHHHHHhhccccCCCCcccchHHHHHHHHHHHHHHHHHHHhc-------cHHHHhHHHHHHHHHHHHHHHhcC------
Confidence 99999886543 134577777777666655554 467899999999999999998874
Q ss_pred CCccCccccccCcCCccCCCCcccCCcccccccccccHHHHHHHHHHHHHHHHHhHHHHHHHHhHhcCCCCCCcCCCcch
Q 009579 247 AAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGV 326 (531)
Q Consensus 247 ~~~~~~~~~~~d~~~~v~~ap~~~~P~~~~~g~P~f~~~~il~~~~~~iv~~~esig~~~av~~~~~~~~~~~~~~~r~l 326 (531)
.|++. +.+++|+++|. |+.|+||+..++.+++.+++.++|++|++.++++..+++..+++++||++
T Consensus 201 ----------~d~~~-v~~a~~~~lP~---~~~P~fd~~~il~l~~~~lv~~~EsiG~~~a~~~~~~~~~~~~~~~~r~l 266 (428)
T PRK10720 201 ----------VDTTP-IIEAHWFALPT---FYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSM 266 (428)
T ss_pred ----------CCHHH-hhcCccccCCC---CCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchH
Confidence 24442 56788999984 56789999999999999999999999999999998876544567899999
Q ss_pred hhhhhHHHhhhhcCCCCCcccccchhhhhhhccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 009579 327 GWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVG 406 (531)
Q Consensus 327 ~adGl~~ilaglfG~~~~tt~s~~n~g~i~~Tgv~SR~~~~~ag~~li~lg~~pk~~~li~~IP~~Vlgg~li~~fg~i~ 406 (531)
.+||++|+++|+||++|.|+|+ ||+|+++.||++||+++.++++++++++|+||++++++.||.||+||+.+++|+++.
T Consensus 267 ~adGlatii~glfG~~p~tty~-en~g~ia~T~v~sr~v~~~a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i~~fg~i~ 345 (428)
T PRK10720 267 FANGLSTVISGFFGSTPNTTYG-ENIGVMAITRVYSTWVIGGAAIIAILLSCVGKLAAAIQAIPLPVMGGVSLLLYGVIG 345 (428)
T ss_pred hhhhHHHHHHHhcCCCCccccc-cccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhh--hhccccCcccEEeehhhHHhhhchhhhhhhhhhhcCCCCccccccccccchhcccccchHHHHHHHHHHhh
Q 009579 407 AGGLSFL--QFCNLNSFRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDN 484 (531)
Q Consensus 407 ~~Gi~~l--~~~~~~d~rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~p~~~~~~~lp~~~~~~l~~gi~~g~l~ailLn~ 484 (531)
.+|+|.+ ++.|++|+||.+|+|+++.+|++.... + ++.++.+|+..|+++|++||+
T Consensus 346 ~~Gi~~l~~~~~~~~~~~n~~i~~~~l~~g~~~~~~--------------------~--~~~~~~~gi~~g~~~ai~Lnl 403 (428)
T PRK10720 346 ASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKV--------------------N--IGAAELKGMALATIVGIGLSL 403 (428)
T ss_pred HHHHHHHHHccCCCCcccchhHHHHHHHHHHHHHHH--------------------H--HHHHhcCcHHHHHHHHHHHHH
Confidence 9999999 788998889999999999999985321 1 467788999999999999999
Q ss_pred hcCCC
Q 009579 485 TLHKK 489 (531)
Q Consensus 485 ~~~~~ 489 (531)
++|.+
T Consensus 404 ll~~~ 408 (428)
T PRK10720 404 IFKLI 408 (428)
T ss_pred Hhccc
Confidence 99965
No 5
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=100.00 E-value=1.6e-67 Score=562.48 Aligned_cols=403 Identities=21% Similarity=0.346 Sum_probs=348.5
Q ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhhceeehhHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHH-HhCCCcceeE
Q 009579 21 LPSISYCITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQS-LFGTRLPAVM 99 (531)
Q Consensus 21 ~~~~~~~~~~~pp~~~~i~~GlQh~lam~~~~i~vP~il~~a~gl~~~~~~~li~atll~sGi~Tllq~-~~G~rlPiv~ 99 (531)
.++..|++|||||+++++++|+||+++|+++++++|+++ |+|++ ++++++|++|++|+ .+|+|+|+++
T Consensus 16 ~~~~~~~~d~~~p~~~~~~~GlQh~lam~~~~v~~Plil----gl~~~-------~tl~~sGi~TllQ~~~~G~rlP~v~ 84 (429)
T TIGR03616 16 LEHHPVAPDERLPAAQTIVMGLQHAVAMFGATVLMPLLM----GFDPN-------LTILMSGIGTLLFFLITGGRVPSYL 84 (429)
T ss_pred CcCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCHh-------HHHHHHHHHHHHHHHHhCCCceeEE
Confidence 355889999999999999999999999999999999995 68875 57999999999997 4799999999
Q ss_pred ccccchHHHHHHHHHhcCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhhhhhH---HHHHhhcCcccHHHHHHHHH
Q 009579 100 GGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLW---RNVTRFLSPLSVVPLISLVG 176 (531)
Q Consensus 100 Gpsfa~i~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~gavlvaGvl~illg~~g~~---~~l~~~~Pp~V~G~~i~lIG 176 (531)
|+||+|++++.++...... +. ++++++++|+++++|++++++++++.+ ++++|+|||+|+|.++++||
T Consensus 85 G~sf~f~~~~~~~~~~~~~-----~~----~~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~G~vv~lIG 155 (429)
T TIGR03616 85 GSSAAFVGAVIAATGYNGQ-----GT----NPNIALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVTGAVVMAIG 155 (429)
T ss_pred cCcHHHHHHHHHHHhhccc-----CC----cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHHHHHHHH
Confidence 9999999988765421110 00 136899999999999999999998654 88999999999999999999
Q ss_pred HHhhhhhccCcch----hhhhHHHHHHHHHHHHHhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCc
Q 009579 177 FGLYEFGFPGVAK----CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQ 252 (531)
Q Consensus 177 l~l~~~~~~~~~~----~~~i~l~~l~~~i~~~~~~~~~~~~~~~~lr~~aiLigivvG~i~a~~~g~~~~~~~~~~~~~ 252 (531)
+++++.++++.+. +| .++.+++.+++++++.|+ ++|++++|+|+++||++++.++.. +..
T Consensus 156 lsL~~vg~~~~~~~~~~~~-~al~tl~~i~l~~l~~~~-------~l~~~avLiGivvG~iva~~l~~~--~g~------ 219 (429)
T TIGR03616 156 LNLAPIAVKSVSASGFDSW-MAVLTILCIGAVAVFTRG-------MLQRLLILVGLIAAYLAYFILTNV--FGL------ 219 (429)
T ss_pred HHHHHHHHHhccccccccH-HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhh--cCC------
Confidence 9999999987642 23 466666666666666655 588999999999999999876421 110
Q ss_pred cccccCcCCccCCCCcccCCcccccccccccHHHHHHHHHHHHHHHHHhHHHHHHHHhHhcCCCCCCcCCCcchhhhhhH
Q 009579 253 ASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVG 332 (531)
Q Consensus 253 ~~~~~d~~~~v~~ap~~~~P~~~~~g~P~f~~~~il~~~~~~iv~~~esig~~~av~~~~~~~~~~~~~~~r~l~adGl~ 332 (531)
.+++|++. +.++||+++| +|+.|.||++.++++++.+++.++|++||+.++++..+++. +++++|++++||++
T Consensus 220 -~~~vd~s~-v~~a~~~~lP---~~~~p~f~~~~il~~~~~~lv~~~esiG~~~a~~~~~~~~~--~~~i~r~l~adGl~ 292 (429)
T TIGR03616 220 -GKAVDFSP-ISQAAWFGLP---NFHTPVFNANAMLLIAPVALILVAENLGHFKAVAGMTGRNL--DPYMGRAFVGDGLA 292 (429)
T ss_pred -CccccCcc-cccCccccCC---cCCCceEcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCC--CchhccchhhhhHH
Confidence 01357764 6789999999 46788999999999999999999999999999999987543 34699999999999
Q ss_pred HHhhhhcCCCCCcccccchhhhhhhccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhh
Q 009579 333 ILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSF 412 (531)
Q Consensus 333 ~ilaglfG~~~~tt~s~~n~g~i~~Tgv~SR~~~~~ag~~li~lg~~pk~~~li~~IP~~Vlgg~li~~fg~i~~~Gi~~ 412 (531)
|+++|++|+.|.|+|+ ||+|+++.||++||+++..+++++++++++||++++++.||.||+||+++++|+++..+|+|+
T Consensus 293 t~~agl~g~~p~tt~~-en~g~i~~T~v~SR~v~~~a~~~lillgl~Pk~~al~~~IP~pVlgG~~i~~fg~i~~~Gi~~ 371 (429)
T TIGR03616 293 TMLSGSVGGTGVTTYA-ENIGVMAVTKVYSTLVFVAAAVFAILLGFSPKFGALIHTIPVAVLGGASIVVFGLIAVAGARI 371 (429)
T ss_pred HHHHHhcCCCCCccee-eeeeeeeecCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999998
Q ss_pred h--hhccccCcccEEeehhhHHhhhchhhhhhhhhhhcCCCCccccccccccchhcccccchHHHHHHHHHHhhhcCCC
Q 009579 413 L--QFCNLNSFRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLHKK 489 (531)
Q Consensus 413 l--~~~~~~d~rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~p~~~~~~~lp~~~~~~l~~gi~~g~l~ailLn~~~~~~ 489 (531)
+ ++.|++++||.+|+|+|+.+|++.- +.+++.+++|++++|+++|++||+++|++
T Consensus 372 l~~~~~d~~~~rn~~ivg~sl~~g~g~~----------------------~~~~~~~~~s~i~~~~~~ai~Ln~~l~~~ 428 (429)
T TIGR03616 372 WVQNKVDLTQNGNLIMVAVTLVLGAGDF----------------------ALTIGAFTLGGIGTATFGAIVLNALLNRD 428 (429)
T ss_pred HHhccCCcCccceeehhHHHHHHHhHHH----------------------HHHHHHHhhCcHHHHHHHHHHHHHhcCCC
Confidence 8 6789988889999999999999752 12457788999999999999999999954
No 6
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=100.00 E-value=1.8e-65 Score=546.07 Aligned_cols=392 Identities=29% Similarity=0.492 Sum_probs=351.9
Q ss_pred CCChHHHHHHHHHHHHHhhceeehhHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhCCC---cceeEccccchHH
Q 009579 31 PPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTR---LPAVMGGSYTFVP 107 (531)
Q Consensus 31 ~pp~~~~i~~GlQh~lam~~~~i~vP~il~~a~gl~~~~~~~li~atll~sGi~Tllq~~~G~r---lPiv~Gpsfa~i~ 107 (531)
|||+++++++|+||+++|+++++++|++++++. +|++|+++++|++++++|++|++|++..++ +|.++|++|+|++
T Consensus 1 ~~~~~~~~~lglQh~l~~~~~~i~~p~iv~~~~-l~~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~i~ 79 (415)
T TIGR00801 1 RPPFLQTLVLGLQHLLAMFGGTVLVPLLVGLAP-LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAFVS 79 (415)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHHHH
Confidence 689999999999999999999999999999999 999999999999999999999999986443 6999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhhh--h-hHHHHHhhcCcccHHHHHHHHHHHhhhhhc
Q 009579 108 STISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFS--G-LWRNVTRFLSPLSVVPLISLVGFGLYEFGF 184 (531)
Q Consensus 108 ~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~gavlvaGvl~illg~~--g-~~~~l~~~~Pp~V~G~~i~lIGl~l~~~~~ 184 (531)
+...+..+ ++|++++|+++++|+++++++++ | .++|++|+|||.|+|.++++||+++++.++
T Consensus 80 ~~~~~~~~---------------~~~~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~i~l 144 (415)
T TIGR00801 80 PMIAIGSG---------------LGIPAIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLIPVAV 144 (415)
T ss_pred HHHHHHhc---------------cCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHHHHHH
Confidence 87766432 26899999999999999999985 3 457889999999999999999999999988
Q ss_pred cCcc--------------hhhhhHHHHHHHHHHHHHhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhccCCCCCCcc
Q 009579 185 PGVA--------------KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPK 250 (531)
Q Consensus 185 ~~~~--------------~~~~i~l~~l~~~i~~~~~~~~~~~~~~~~lr~~aiLigivvG~i~a~~~g~~~~~~~~~~~ 250 (531)
++++ .++.+++.++++++++.++.|+ ++|++++|+|+++||++++.+|.
T Consensus 145 ~~~~g~~~~~~~~~~~~~~~~~vg~~~l~~~vl~~~~~~g-------~~~~~aiLigiv~g~i~a~~lg~---------- 207 (415)
T TIGR00801 145 KMAAGGEAAMSSATYGSLENLGVAFVVLALIILLNRFGKG-------FLKSISILIGILVGYILALFMGI---------- 207 (415)
T ss_pred HHhccCCCcccccccCchhhHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHcCC----------
Confidence 7653 1245677777776666666554 57899999999999999998864
Q ss_pred CccccccCcCCccCCCCcccCCcccccccccccHHHHHHHHHHHHHHHHHhHHHHHHHHhHhcCCCCCCcCCCcchhhhh
Q 009579 251 TQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQG 330 (531)
Q Consensus 251 ~~~~~~~d~~~~v~~ap~~~~P~~~~~g~P~f~~~~il~~~~~~iv~~~esig~~~av~~~~~~~~~~~~~~~r~l~adG 330 (531)
+|+++ +.++||+++|.+++|+ |+||+..+..++++++++++|++|+++++++.+++++++++++||++.+||
T Consensus 208 ------~~~~~-v~~~~~~~lP~~~~~g-~~f~~~~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adG 279 (415)
T TIGR00801 208 ------VDFSP-VIDAPWFSLPTPFTFG-PSFEWPAILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADG 279 (415)
T ss_pred ------ccchh-hccCcccccCCccCCC-ceecHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhh
Confidence 34443 5678999999888887 699999999999999999999999999999999876544788999999999
Q ss_pred hHHHhhhhcCCCCCcccccchhhhhhhccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHHHHHHHHHHhhh
Q 009579 331 VGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGL 410 (531)
Q Consensus 331 l~~ilaglfG~~~~tt~s~~n~g~i~~Tgv~SR~~~~~ag~~li~lg~~pk~~~li~~IP~~Vlgg~li~~fg~i~~~Gi 410 (531)
++|+++|+||++|.|+|+ ||+|+++.||++||++..++|+++++++++||++++++.||.||+||+++++|+++..+|+
T Consensus 280 l~~i~aglfG~~p~t~~s-en~g~~~~T~~~sr~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l~~~~~i~~~gi 358 (415)
T TIGR00801 280 LATLLAGLFGGFPNTTFA-QNIGVIALTRVASRWVIVGAAVILIALGFFPKIAALITSIPSPVLGGASIVMFGMIAASGI 358 (415)
T ss_pred HHHHHHHhcCCCCCcchh-hhheeeeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccCcccEEeehhhHHhhhch---hhhhhhhhhhcCCCCccccccccccchhcccccchHHHHHHHHHHhhh
Q 009579 411 SFLQFCNLNSFRVKFILGFSIFIGLSV---PQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNT 485 (531)
Q Consensus 411 ~~l~~~~~~d~rn~~ivg~sl~~Gl~~---p~~~~~~~~~~~~~p~~~~~~~lp~~~~~~l~~gi~~g~l~ailLn~~ 485 (531)
|.+.+.|+|++||++++|+|+.+|+++ |+++++ +| +++||+++|+++|++||++
T Consensus 359 ~~l~~~~~~~~r~~~i~~~s~~~g~~~~~~p~~~~~----------------~p-----~~~~g~~~g~~~ai~Ln~~ 415 (415)
T TIGR00801 359 RILIRNKLDNRRNRNIIAASVGLGLGVTGVPDIFGN----------------FP-----LLLSGIALAGIVAILLNLI 415 (415)
T ss_pred HHHHhCccCcccceehHHHHHHHHHHHhccHHHHhh----------------Cc-----hhcccHHHHHHHHHHHhcC
Confidence 999999998789999999999999996 877765 46 7899999999999999975
No 7
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=100.00 E-value=5.4e-65 Score=541.74 Aligned_cols=388 Identities=31% Similarity=0.527 Sum_probs=349.6
Q ss_pred HHHHHHHhhceeehhHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHH----HhCCCcceeEccccchHHHHHHHHHhc
Q 009579 41 GFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQS----LFGTRLPAVMGGSYTFVPSTISIILAG 116 (531)
Q Consensus 41 GlQh~lam~~~~i~vP~il~~a~gl~~~~~~~li~atll~sGi~Tllq~----~~G~rlPiv~Gpsfa~i~~~~~i~~~~ 116 (531)
|+||+++|+++++++|++++++.|+|++|++.++|++++++|++|++|+ .+|+|+|+++|||++++++...+..+
T Consensus 1 ~~Qh~l~~~~~~i~~p~i~~~a~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~~- 79 (406)
T TIGR03173 1 GLQHVLAMYAGAVAVPLIVGGALGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGAG- 79 (406)
T ss_pred CccchHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhhh-
Confidence 6899999999999999999999999999999999999999999999998 46899999999999999887665432
Q ss_pred CCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCcccHHHHHHHHHHHhhhhhccCcc--------
Q 009579 117 RFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVA-------- 188 (531)
Q Consensus 117 g~~~~~~~~~~~~~~~~~~~~gavlvaGvl~illg~~g~~~~l~~~~Pp~V~G~~i~lIGl~l~~~~~~~~~-------- 188 (531)
++|++++|+++++|++++++| +.++|++|+|||+|+|.++++||+++.+.++++..
T Consensus 80 --------------~~~~~~~ga~~v~Gii~illg--~~~~~l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~g~~~~~~~ 143 (406)
T TIGR03173 80 --------------GGLGAIFGAVIVAGLFVILLA--PFFSKLVRFFPPVVTGTVITLIGLSLMPVAINWAAGGAGAPDF 143 (406)
T ss_pred --------------hhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHhccCCCcccc
Confidence 379999999999999999999 46799999999999999999999999998876542
Q ss_pred ---hhhhhHHHHHHHHHHHHHhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCccccccCcCCccCC
Q 009579 189 ---KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDA 265 (531)
Q Consensus 189 ---~~~~i~l~~l~~~i~~~~~~~~~~~~~~~~lr~~aiLigivvG~i~a~~~g~~~~~~~~~~~~~~~~~~d~~~~v~~ 265 (531)
.++.+++.++++++++.++.| +++|++++|+++++||++++.+|. .|++. +.+
T Consensus 144 ~~~~~~~l~l~~l~~~il~~~~~~-------~~~~~~aiLi~ivvg~iva~~~g~----------------~~~~~-i~~ 199 (406)
T TIGR03173 144 GSPQNLGLALLTLVIILLLNRFGK-------GFLRSIAVLLGLVVGTIVAAALGM----------------VDFSG-VAE 199 (406)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhh-------hHHHHhHHHHHHHHHHHHHHHhcC----------------CCchh-hcc
Confidence 134567777766655554443 467899999999999999998864 24432 566
Q ss_pred CCcccCCcccccccccccHHHHHHHHHHHHHHHHHhHHHHHHHHhHhcCCCCCCcCCCcchhhhhhHHHhhhhcCCCCCc
Q 009579 266 APWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGT 345 (531)
Q Consensus 266 ap~~~~P~~~~~g~P~f~~~~il~~~~~~iv~~~esig~~~av~~~~~~~~~~~~~~~r~l~adGl~~ilaglfG~~~~t 345 (531)
+||+.+|.+++|+.|+||+..+..++.+++++++|++|+++++++..+++. +++++||++.+||++|+++|+||++|.|
T Consensus 200 ~~~~~~P~~~~~~~P~f~~~~~~~~~~~~lv~~~esig~~~a~~~~~g~~~-~~~~~~~~l~~~Gi~~i~aglfG~~p~t 278 (406)
T TIGR03173 200 APWFALPTPFHFGAPTFDLVAILTMIIVYLVSMVETTGDFLALGEITGRPI-TEKDLAGGLRADGLGSALGGLFNTFPYT 278 (406)
T ss_pred CCeeeCCCCCcCCCCeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CchhccchHHhccHHHHHHHHhCCCCCc
Confidence 789999988889999999999999999999999999999999999987543 4678999999999999999999999999
Q ss_pred ccccchhhhhhhccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhhhhhccccCcccEE
Q 009579 346 SVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRVKF 425 (531)
Q Consensus 346 t~s~~n~g~i~~Tgv~SR~~~~~ag~~li~lg~~pk~~~li~~IP~~Vlgg~li~~fg~i~~~Gi~~l~~~~~~d~rn~~ 425 (531)
+|+ ||++.++.||++||++..++|+++++++++||++++++.||.||+||+++++|+++..+|+|.+++.|++|+||++
T Consensus 279 ~~~-~~~~~~~~tg~~sr~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~~~~~i~~~g~~~l~~~~~~~~rn~~ 357 (406)
T TIGR03173 279 SFS-QNVGLVQLTGVKSRYVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLVMFGMVAASGIRILSKVDFDRRRNLL 357 (406)
T ss_pred chh-hhHHHHHHhCCCchHhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcceeh
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred eehhhHHhhhch---hhhhhhhhhhcCCCCccccccccccchhcccccchHHHHHHHHHHhhhcC
Q 009579 426 ILGFSIFIGLSV---PQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLH 487 (531)
Q Consensus 426 ivg~sl~~Gl~~---p~~~~~~~~~~~~~p~~~~~~~lp~~~~~~l~~gi~~g~l~ailLn~~~~ 487 (531)
|+|+++.+|++. |+++++ +|++++++++||+++|+++|++||+++|
T Consensus 358 i~g~~~~~g~~~~~~p~~~~~----------------~p~~~~~~~~~~~~~g~~~ai~l~~~~p 406 (406)
T TIGR03173 358 IVAVSLGLGLGPTVVPEFFSQ----------------LPAWAQTLFSSGIAVGAISAILLNLLFN 406 (406)
T ss_pred hhHHHHHHHHHHHhhHHHHHH----------------ChHHHHHHHhCcHHHHHHHHHHHHhhcC
Confidence 999999999974 888877 7999999999999999999999999987
No 8
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=100.00 E-value=1.2e-61 Score=513.23 Aligned_cols=371 Identities=33% Similarity=0.594 Sum_probs=281.8
Q ss_pred HHHHHHHHHHHHHhhceeehhHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH-hCCCcceeEccccchHHHHHHHH
Q 009579 35 PEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL-FGTRLPAVMGGSYTFVPSTISII 113 (531)
Q Consensus 35 ~~~i~~GlQh~lam~~~~i~vP~il~~a~gl~~~~~~~li~atll~sGi~Tllq~~-~G~rlPiv~Gpsfa~i~~~~~i~ 113 (531)
+|++++|+||+++|+++++++|.++++++|+ ++++..+++++++++|++|++|++ +|+|+|+++|+|+++++....+.
T Consensus 1 ~~~i~~glQ~~l~m~~~~iv~P~il~~~~g~-~~~~~~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~~~~~~~ 79 (389)
T PF00860_consen 1 GKEILLGLQHFLAMFYIIIVVPLILAAAFGL-DADTAALISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIFAFMIVI 79 (389)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTTS------------HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG
T ss_pred CccHHHHHHHHHHHHHHHHHhHHHHhhcccc-cchhhHHHHHHHHHHHHHHHHHHhcCCCceecccccchhhhhhhhccc
Confidence 5899999999999999999999999998899 777789999999999999999999 89999999999999997332221
Q ss_pred HhcCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCcccHHHHHHHHHHHhhhhhccCcchhh--
Q 009579 114 LAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAKCV-- 191 (531)
Q Consensus 114 ~~~g~~~~~~~~~~~~~~~~~~~~gavlvaGvl~illg~~g~~~~l~~~~Pp~V~G~~i~lIGl~l~~~~~~~~~~~~-- 191 (531)
.+ .+++.+++++++|+++++|++++++++++.++|++|+|||.|.|.++++||+++.+.++++.+..+
T Consensus 80 -g~---------~~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~ 149 (389)
T PF00860_consen 80 -GM---------AESGGYGLQAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIWGN 149 (389)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS---
T ss_pred -cc---------ccchhhchhhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhcccccccc
Confidence 10 023457899999999999999999999999999999999999999999999999999887654321
Q ss_pred ------------hhHHHHHHHHHHHHHhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCccccccCc
Q 009579 192 ------------EIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDR 259 (531)
Q Consensus 192 ------------~i~l~~l~~~i~~~~~~~~~~~~~~~~lr~~aiLigivvG~i~a~~~g~~~~~~~~~~~~~~~~~~d~ 259 (531)
.++..+++..+.++.+. ++++|++++++|+++||++++.+|.. |+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ailigi~~g~i~~~~~g~~----------------~~ 206 (389)
T PF00860_consen 150 PDGLLVGDGKNLGLAVLTLLFILLLSLFL-------KGFLRKGAILIGIIAGWIVAAILGVV----------------DF 206 (389)
T ss_dssp BTT-B---HHHHHHHHHHHHHHHHHHHSS-------STTTTTHHHHHHHHHHHHHHHHHHHT----------------TS
T ss_pred ccccccccccccccccccchhhhhhhhhh-------hhhcccccchhhhhhhhhhhhccccc----------------cc
Confidence 23344444444444443 55789999999999999999999852 44
Q ss_pred CCccCCCCcccCCcccccccccccHHHHHHHHHHHHHHHHHhHHHHHHHHhHhcCCCCCCcCCCcchhhhhhHHHhhhhc
Q 009579 260 AGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLF 339 (531)
Q Consensus 260 ~~~v~~ap~~~~P~~~~~g~P~f~~~~il~~~~~~iv~~~esig~~~av~~~~~~~~~~~~~~~r~l~adGl~~ilaglf 339 (531)
++.+.++||+.+|.+++|++|.|+++++++++.+++++++|++||+.++++..+++++++++++|++.+||++|+++|+|
T Consensus 207 ~~~~~~~~~~~~p~~~~~g~p~f~~~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~ 286 (389)
T PF00860_consen 207 SPSVSSAPWFSLPSPFPFGWPSFDPGAILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLF 286 (389)
T ss_dssp SH-HHHS-SS--------------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccccccccccccccccccccHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhh
Confidence 43256799999999999999999999999999999999999999999999999987766889999999999999999999
Q ss_pred CCCCCcccccchhhhhhhccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhhhhhcccc
Q 009579 340 GTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLN 419 (531)
Q Consensus 340 G~~~~tt~s~~n~g~i~~Tgv~SR~~~~~ag~~li~lg~~pk~~~li~~IP~~Vlgg~li~~fg~i~~~Gi~~l~~~~~~ 419 (531)
|+.|+|+|+ ||+|.++.||++|||+...+++++++++++||++++++.||.||+||++++++|+++.+|+|++++.|+|
T Consensus 287 G~~~~t~~~-en~g~i~~t~v~Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv~~g~i~~~gi~~i~~~~~~ 365 (389)
T PF00860_consen 287 GTSPTTTYS-ENAGGIAATGVASRRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLVLFGMIMMSGIRNIDWVDLD 365 (389)
T ss_dssp T---EEE-H-HHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS-
T ss_pred cCCCCcccc-ccchhhhhhccccceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhHhheecccC
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEeehhhHHhhhchhhh
Q 009579 420 SFRVKFILGFSIFIGLSVPQY 440 (531)
Q Consensus 420 d~rn~~ivg~sl~~Gl~~p~~ 440 (531)
|.||.+++++++.+|++++.+
T Consensus 366 ~~r~~~iv~~~l~~g~~i~~~ 386 (389)
T PF00860_consen 366 SARNAFIVGLSLPLGLSIAFG 386 (389)
T ss_dssp SHHHHHHHHHHHHHHHH----
T ss_pred ccccHHHHHHhHHHHHHHhcc
Confidence 899999999999999998643
No 9
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.5e-33 Score=291.76 Aligned_cols=384 Identities=15% Similarity=0.186 Sum_probs=292.9
Q ss_pred CCCCcccccCCCC-ChHHHHHHHHHHHHHhhceeehhHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCccee
Q 009579 20 QLPSISYCITSPP-PWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAV 98 (531)
Q Consensus 20 ~~~~~~~~~~~~p-p~~~~i~~GlQh~lam~~~~i~vP~il~~a~gl~~~~~~~li~atll~sGi~Tllq~~~G~rlPiv 98 (531)
+.-|+.|+++||. ..++|+.+|+++|++|.|...++|.++++ .|+|. ..+..+|+++++++|++++++ +|+|+.
T Consensus 4 ~~~~~~F~l~~~~t~vrtEiiAGlTTFltM~YIl~VnP~IL~~-ag~~~---~av~~AT~l~a~~gs~~mgl~-An~P~a 78 (436)
T COG2252 4 GDLDRFFKLKEHGTTVRTEVIAGLTTFLTMAYIVFVNPQILGA-AGMPV---GAVFVATCLAAAIGSIAMGLY-ANLPIA 78 (436)
T ss_pred hHHHHHhCccccCchHHHHHHHHHHHHHHHHHhheecHHHHHh-cCCCc---hhHHHHHHHHHHHHHHHHHHH-HcCchh
Confidence 3457899999998 49999999999999999999999999987 67884 477889999999999999999 799999
Q ss_pred Eccc---cchHHHHHHHHHhcCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCcc-------cH
Q 009579 99 MGGS---YTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPL-------SV 168 (531)
Q Consensus 99 ~Gps---fa~i~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~gavlvaGvl~illg~~g~~~~l~~~~Pp~-------V~ 168 (531)
++|. .+|.. ++++..+++ .||+++++++++|+++++++++|+|+|++|.+|.. .+
T Consensus 79 lapgmglnAfFa--ftvv~~~gi-------------~wq~AL~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGI 143 (436)
T COG2252 79 LAPGMGLNAFFA--FTVVLGMGL-------------SWQVALGAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGI 143 (436)
T ss_pred hcchhhHHHHHH--HHHHHhcCC-------------cHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHH
Confidence 9994 33332 235545543 69999999999999999999999999999999974 46
Q ss_pred HHHHHHHHHHhhhhhccCc------c---h-hhhhHHHHHHHHHHHHHhhhhhhhccccchhhhHHHHHHHHHHHHHHHH
Q 009579 169 VPLISLVGFGLYEFGFPGV------A---K-CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLL 238 (531)
Q Consensus 169 G~~i~lIGl~l~~~~~~~~------~---~-~~~i~l~~l~~~i~~~~~~~~~~~~~~~~lr~~aiLigivvG~i~a~~~ 238 (531)
|.++.+||+......+.+- + + .+.+++.++++++.+ ..||+ ..+++++++..++++++.
T Consensus 144 GlFia~IgL~~~Givv~~~~tlv~LG~~~~p~vll~i~G~~l~~~L--~~~~i---------~Gaili~i~~~t~~g~~~ 212 (436)
T COG2252 144 GLFIALIGLKNAGIVVANPATLVALGDFTSPGVLLAILGLLLIIVL--VSRKI---------KGAILIGILVTTILGIIL 212 (436)
T ss_pred HHHHHHHHHhhCCeEEecCcceEEeecCCCchHHHHHHHHHHHHHH--HHhhc---------cHhhhHHHHHHHHHHHHh
Confidence 7777777776554433221 1 1 345666777666555 44554 679999999999999999
Q ss_pred HhccCCCCCCccCccccccCcCCccCCCCcccCCcccccccc--cccHHHHHHHHHHHHHHHHHhHHHHHHHHhHhcCCC
Q 009579 239 TVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAP--SFDAGEAFAMMMASFVALVESTGAFFAVARYASATP 316 (531)
Q Consensus 239 g~~~~~~~~~~~~~~~~~~d~~~~v~~ap~~~~P~~~~~g~P--~f~~~~il~~~~~~iv~~~esig~~~av~~~~~~~~ 316 (531)
|.... +.+.....|.. .|...+.+.. ...+..+...+.+.+++.+|++|++.+++++++..+
T Consensus 213 g~~~~---------------~~~~~~~~p~~-~~~~~~~d~~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~ag~~~ 276 (436)
T COG2252 213 GIDVH---------------FGGLVGAPPSL-SPIFGQLDLSGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKAGLLD 276 (436)
T ss_pred ccccc---------------ccccccCCCCc-cchhhHhhhccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhcCCcC
Confidence 75211 00000111111 0111111111 122455667788999999999999999999988533
Q ss_pred C--CCcCCCcchhhhhhHHHhhhhcCCCCCcccccchhhhhhhccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCCHHHH
Q 009579 317 M--PPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIV 394 (531)
Q Consensus 317 ~--~~~~~~r~l~adGl~~ilaglfG~~~~tt~s~~n~g~i~~Tgv~SR~~~~~ag~~li~lg~~pk~~~li~~IP~~Vl 394 (531)
+ +.++.+|.+.+|++++++++++|+.+.|+|. |+...++.-|.+.-.....+..+++.+.+.| +...+|..+.
T Consensus 277 ~~g~~~~~~~al~~D~v~t~~ga~~GtS~~t~yI-ESaaGva~GgrTGltavv~g~lFl~~lf~~P----l~~~vP~~At 351 (436)
T COG2252 277 KNGKMPRIGKALLADSVATVVGALFGTSTVTAYI-ESAAGVAAGGRTGLTAVVTGLLFLLSLFFSP----LAALVPGYAT 351 (436)
T ss_pred CCCCccccchHHHHhHHHHHHHHhcCCcchhhhh-hcccccccccccccHHHHHHHHHHHHHHHHH----HHHhCcHhhh
Confidence 2 3479999999999999999999999999999 9999988877777777888888888866666 9999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccCcccEEeehhhHHhhhchhhhhhhhhhhcCCCCccccccccccchhcccccchHH
Q 009579 395 AALYCLFFAYVGAGGLSFLQFCNLNSFRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFV 474 (531)
Q Consensus 395 gg~li~~fg~i~~~Gi~~l~~~~~~d~rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~p~~~~~~~lp~~~~~~l~~gi~~ 474 (531)
+++++++ |.++. +.++++||+|..+.+ |.++.... +| +.+...+|++.
T Consensus 352 apaLi~v-G~lM~---~~v~~id~~d~~ea~------------PaF~tiv~--------------mp--lTySIa~Gia~ 399 (436)
T COG2252 352 APALIIV-GALML---SSVKQIDWSDFTEAV------------PAFLTIVM--------------MP--LTYSIADGIAF 399 (436)
T ss_pred hHHHHHH-HHHHH---hhhccCCchhhhhhh------------HHHHHHHH--------------HH--HHHHHHhhHHH
Confidence 9999985 66655 556689998866533 77666531 34 56788899999
Q ss_pred HHHHHHHHhhhcC
Q 009579 475 AGCVAFFLDNTLH 487 (531)
Q Consensus 475 g~l~ailLn~~~~ 487 (531)
|.+.+.+++....
T Consensus 400 Gfi~y~i~k~~~g 412 (436)
T COG2252 400 GFISYVILKVFTG 412 (436)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998654
No 10
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.93 E-value=3.7e-23 Score=216.08 Aligned_cols=314 Identities=15% Similarity=0.208 Sum_probs=233.0
Q ss_pred HHHHHHHHHHHHhhceeehhHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceeEccccchHHHHHHHHHh
Q 009579 36 EAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILA 115 (531)
Q Consensus 36 ~~i~~GlQh~lam~~~~i~vP~il~~a~gl~~~~~~~li~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~i~~~~~i~~~ 115 (531)
..+..|+-.++.-+.+.+++-+--+++.|+|++|.++++++.++.+|++|++|++. +|+|+++++| ..-...+ +...
T Consensus 22 s~~~aG~va~lvg~~~~~~iv~~a~~~~g~s~aq~~swl~a~~~~~Gl~ti~lS~~-~r~Pi~~awS-tPGaAll-~~~~ 98 (395)
T TIGR00843 22 PTLIAGFLAVLIGYAGPAAIFFQAAIKAGASTAMIIGWITAIGIAAAVSGIFLSIR-FKTPVLTAWS-APGAALL-VTGF 98 (395)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCeeeecC-chHHHHH-HHhc
Confidence 57889999999999888776666667799999999999999999999999999996 7999999999 2222222 2222
Q ss_pred cCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCcccHHHHHHHHHHHhhhhhccCcchhhhhHH
Q 009579 116 GRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAKCVEIGL 195 (531)
Q Consensus 116 ~g~~~~~~~~~~~~~~~~~~~~gavlvaGvl~illg~~g~~~~l~~~~Pp~V~G~~i~lIGl~l~~~~~~~~~~~~~i~l 195 (531)
.+ .+++++.|+.+++|++.+++|++|+++|++|++|+.+.+.++..|.+...-..++...+.+.++.
T Consensus 99 ~~-------------~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLAGIlL~f~l~~~~a~~~~pll~~ 165 (395)
T TIGR00843 99 PG-------------ISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLAGILFQFGLGAFAALDGLFLICF 165 (395)
T ss_pred CC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 22 26899999999999999999999999999999999999999887766554444444444454443
Q ss_pred HHHHHHHHHHHhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCccccccCcCCccCCCCcccCCccc
Q 009579 196 PQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPF 275 (531)
Q Consensus 196 ~~l~~~i~~~~~~~~~~~~~~~~lr~~aiLigivvG~i~a~~~g~~~~~~~~~~~~~~~~~~d~~~~v~~ap~~~~P~~~ 275 (531)
..++..+ ..| |+.+++++++++++|.++++..|.. |.++ +.. . +..|
T Consensus 166 ~mll~~l----~~~-------r~~Pr~avl~aLlvG~iva~~~G~~----------------~~~~-~~~-~-l~~p--- 212 (395)
T TIGR00843 166 SMLLCWL----ASK-------AFAPRYAMIAALICGIAFSFALGDM----------------NPTD-LDF-K-IALP--- 212 (395)
T ss_pred HHHHHHH----HHH-------HhcchHHHHHHHHHHHHHHHHhcCC----------------Cccc-ccc-c-cccc---
Confidence 3322221 222 3457899999999999999887642 1111 110 0 2222
Q ss_pred ccccccccHHHHHHH-HHHHHHHHHHhHHHHHHHHhHhcCCCCCCcCCCcchhhhhhHHHhhhhcCCCCCcccccchhhh
Q 009579 276 QWGAPSFDAGEAFAM-MMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGL 354 (531)
Q Consensus 276 ~~g~P~f~~~~il~~-~~~~iv~~~esig~~~av~~~~~~~~~~~~~~~r~l~adGl~~ilaglfG~~~~tt~s~~n~g~ 354 (531)
.|..|+||+...+.. ++.+++.+......-.++.|.+++++ +.|+-+.++|++|++++.||+++ -|.+.
T Consensus 213 ~~~~P~fs~~a~~~l~lPl~~vtm~~qnlpgiavl~aaGy~~----p~~~~~~~tGl~sll~ApfGg~~------~nlaa 282 (395)
T TIGR00843 213 QFIAPDFSFAHSLNLALPLFLVSLAGQFAPGIAALKAAGYNA----PAKPIIAAAGLAALFAAFAGGIS------IGIAA 282 (395)
T ss_pred eeeCCCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHcCCCC----CchHHHHHHHHHHHHHhccCCch------hhhhH
Confidence 566789988776664 57888888888767777788777543 36999999999999999999997 23333
Q ss_pred hhhc--------c-CCchhH-HHHHHHHHHHHHHh-hHHHHHHHhCCHHHHHH-HHHHHHHHHHHh
Q 009579 355 LALT--------R-VGSRRV-VQISAGFMIFFSVL-GKFGAVFASIPAPIVAA-LYCLFFAYVGAG 408 (531)
Q Consensus 355 i~~T--------g-v~SR~~-~~~ag~~li~lg~~-pk~~~li~~IP~~Vlgg-~li~~fg~i~~~ 408 (531)
|..+ + -..||. .+.+|++.+++|++ +.+..+++.+|.+.+.. +-+.+++.+..+
T Consensus 283 itaAic~G~~ah~d~~rR~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~laGlAll~~~~~~ 348 (395)
T TIGR00843 283 ITAAICMGKDAHEDKDKRWIAAAAAGIFYLLAGLFAGAITALFAALPKELIAALAGLALLGAIAGN 348 (395)
T ss_pred HhHHHhcCcccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 3221 1 233443 48899999999999 78999999999999988 466777877653
No 11
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=99.91 E-value=4.9e-22 Score=218.01 Aligned_cols=317 Identities=17% Similarity=0.231 Sum_probs=231.9
Q ss_pred hHHHHHHHHHHHHHhhceeehhHHHhhh--hcCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceeEccccchHHHHHH
Q 009579 34 WPEAILLGFQHYIVMLGTTVLIPTSLVP--QMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTIS 111 (531)
Q Consensus 34 ~~~~i~~GlQh~lam~~~~i~vP~il~~--a~gl~~~~~~~li~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~i~~~~~ 111 (531)
++..+++|+.-.+..+ |.-++- ..|+|+ .+.+.++-++.++-+++|.+--.+.||..++...+..
T Consensus 21 l~~Dl~AGltva~val------P~ama~a~~aGv~p-------~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~ 87 (554)
T COG0659 21 LRGDLLAGLTVAAVAL------PLAMAFAIAAGVPP-------EAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAA 87 (554)
T ss_pred hHHHHHHHHHHHHHHh------HHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHH
Confidence 6789999999876554 544432 379998 5888999999999999987777799997766655555
Q ss_pred HHHhcCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCcccHHHHHHHHHHHhhhhhccCc----
Q 009579 112 IILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGV---- 187 (531)
Q Consensus 112 i~~~~g~~~~~~~~~~~~~~~~~~~~gavlvaGvl~illg~~g~~~~l~~~~Pp~V~G~~i~lIGl~l~~~~~~~~---- 187 (531)
+..+.. .++++.++-+++++|++++++|++|+ +++.+++|+.|+-.++..||+.++..+++.+
T Consensus 88 ~i~~~~------------~~g~~~~~~~tllaGv~~i~~G~lRL-G~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~ 154 (554)
T COG0659 88 VIASLV------------ETGLALAFLATLLAGVFQILLGLLRL-GRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLA 154 (554)
T ss_pred HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 554210 24789999999999999999999998 9999999988888888888987765544321
Q ss_pred --ch----------------h---hhhHHHHHHHHHHHHHhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhccCCCC
Q 009579 188 --AK----------------C---VEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYND 246 (531)
Q Consensus 188 --~~----------------~---~~i~l~~l~~~i~~~~~~~~~~~~~~~~lr~~aiLigivvG~i~a~~~g~~~~~~~ 246 (531)
.. + +.+++.++.+++. .+++ ..|.++.++++++++.+++.+.....
T Consensus 155 ~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~l~il~~----~~~~------~~~~P~~liaiv~~t~i~~~~~~~~~--- 221 (554)
T COG0659 155 SKVSGFWAKVSALFTVLLTINLATLLLGLLTLAILLF----LPRL------TPRIPSPLIALVLGTLIVWIFPLDSL--- 221 (554)
T ss_pred ccccchHHHHHHHHHhcccccHHHHHHHHHHHHHHHH----ccch------hhhCCcHHHHHHHHHHHHHHhcCCch---
Confidence 10 1 1233333333322 2332 13577899999999999998864210
Q ss_pred CCccCccccccCcCCccCCCCcccCCcc-cccccccccH----HHHHHHHHHHHHHHHHhHHHHHHHHhHhcCCCCCCcC
Q 009579 247 AAPKTQASCRTDRAGLIDAAPWIRVPWP-FQWGAPSFDA----GEAFAMMMASFVALVESTGAFFAVARYASATPMPPSV 321 (531)
Q Consensus 247 ~~~~~~~~~~~d~~~~v~~ap~~~~P~~-~~~g~P~f~~----~~il~~~~~~iv~~~esig~~~av~~~~~~~~~~~~~ 321 (531)
+.+ +...+ +|.. .+|+.|.+++ ..+...+.++++.++|++.+..+.+++.++ +.+
T Consensus 222 ---------~~G--~i~~~-----lp~~~~~~~~P~~~~~~~~~l~~~al~la~lg~iesllta~~~~~~~~~----~~d 281 (554)
T COG0659 222 ---------RYG--EIPGS-----LPSGLPHFRLPNVSLSLLLALLPYALALALLGLLESLLTAVSFDGMTGT----KHD 281 (554)
T ss_pred ---------hcc--cCccc-----CCcCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCC
Confidence 011 01111 2221 1345556654 345556789999999999999999998764 467
Q ss_pred CCcchhhhhhHHHhhhhcCCCCCcccccchhhhhhhccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHHH-
Q 009579 322 LSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCL- 400 (531)
Q Consensus 322 ~~r~l~adGl~~ilaglfG~~~~tt~s~~n~g~i~~Tgv~SR~~~~~ag~~li~lg~~pk~~~li~~IP~~Vlgg~li~- 400 (531)
.||+++++|++|+++|+||++|.|... .+.......|.+||.+.++++++++++-++ ++.++..||.+++++++++
T Consensus 282 ~nrELiaqGiaNi~sglfgg~p~~g~~-srS~~nv~sGarT~lsgi~~a~~lll~l~~--~~~~~~~IP~a~Laavli~v 358 (554)
T COG0659 282 SNRELIAQGIANIASGLFGGIPATGSI-SRSAINIKSGARTRLSGIIHAALLLLLLLF--LAPLVSYIPLAALAAVLILV 358 (554)
T ss_pred CCHHHHHhhHHHHHHHHhCCccccchh-HHHHHHHHhCCcChHHHHHHHHHHHHHHHH--HHHHHHhCcHHHHHHHHHHH
Confidence 899999999999999999999999998 667777789999999999988887665443 5679999999999998774
Q ss_pred HHHHHHHhhhhh
Q 009579 401 FFAYVGAGGLSF 412 (531)
Q Consensus 401 ~fg~i~~~Gi~~ 412 (531)
.++++-...++.
T Consensus 359 ~~~l~~~~~~~~ 370 (554)
T COG0659 359 GWGLLDWSLLKP 370 (554)
T ss_pred HHHhccHHHHHH
Confidence 555555555444
No 12
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=99.87 E-value=1.6e-19 Score=185.92 Aligned_cols=313 Identities=20% Similarity=0.260 Sum_probs=236.6
Q ss_pred HHHHHHHHHHHHhhceeehhHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceeEccccchHHHHHHHHHh
Q 009579 36 EAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILA 115 (531)
Q Consensus 36 ~~i~~GlQh~lam~~~~i~vP~il~~a~gl~~~~~~~li~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~i~~~~~i~~~ 115 (531)
..+..|+-.++.-+.+.+++-+-.+++.|++++|+..++.+..+.+|+.|+..++. +|.|++.++|-. +.++.+...
T Consensus 6 s~~~aG~va~lvg~tg~~aiv~qaa~a~g~s~~q~~SWl~al~~~~Gl~~i~lSl~-yR~Pi~~AWStP--GaAlL~~~~ 82 (378)
T PF03594_consen 6 SAVSAGFVAVLVGYTGPVAIVLQAAQAAGASPAQIASWLFALYLGMGLTSILLSLR-YRMPIVTAWSTP--GAALLATSL 82 (378)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCchhhcchH--HHHHHHHhc
Confidence 57789999999888888776666667799999999999999999999999999986 899999888732 222222222
Q ss_pred cCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCcccHHHHHHHHHHHhhhhhccCcchhhhhHH
Q 009579 116 GRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAKCVEIGL 195 (531)
Q Consensus 116 ~g~~~~~~~~~~~~~~~~~~~~gavlvaGvl~illg~~g~~~~l~~~~Pp~V~G~~i~lIGl~l~~~~~~~~~~~~~i~l 195 (531)
.+ .+++++.|+.+++|++.+++|++|+++|+.|.+|+.+...++..+-+...-..++.+.+++.+..
T Consensus 83 ~~-------------~~~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGvLl~f~l~~f~a~~~~P~l~~ 149 (378)
T PF03594_consen 83 PG-------------YSFAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGVLLPFGLAAFTALQADPLLVG 149 (378)
T ss_pred cC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 23 37899999999999999999999999999999999888888775555444444444555666655
Q ss_pred HHHHHHHHHHHhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCccccccCcCCccCCCCcccCCccc
Q 009579 196 PQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPF 275 (531)
Q Consensus 196 ~~l~~~i~~~~~~~~~~~~~~~~lr~~aiLigivvG~i~a~~~g~~~~~~~~~~~~~~~~~~d~~~~v~~ap~~~~P~~~ 275 (531)
..++..++. |+ +.++++++.++++|.++++..|.. +... .+ +.++.|
T Consensus 150 ~ml~~~l~~----~r-------~~pr~av~~al~~g~~~a~~~g~~----------------~~~~----~~-~~~~~p- 196 (378)
T PF03594_consen 150 PMLAVFLLA----RR-------FSPRYAVLAALVAGVAVAALTGQL----------------HPSA----LQ-LSLAHP- 196 (378)
T ss_pred HHHHHHHHH----HH-------HcchhHHHHHHHHHHHHHHhcCCC----------------Cccc----cc-ccccee-
Confidence 555444433 32 346779999999999988766532 1111 11 123322
Q ss_pred ccccccccHHHHHHH-HHHHHHHHHHhHHHHHHHHhHhcCCCCCCcCCCcchhhhhhHHHhhhhcCCCCCcccccchhhh
Q 009579 276 QWGAPSFDAGEAFAM-MMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGL 354 (531)
Q Consensus 276 ~~g~P~f~~~~il~~-~~~~iv~~~esig~~~av~~~~~~~~~~~~~~~r~l~adGl~~ilaglfG~~~~tt~s~~n~g~ 354 (531)
.|-.|+||+..++.+ ++++++.+......-.++-|..|. +++.|+-+...|+++++.+.||+++ -|.+.
T Consensus 197 ~~~~P~Fs~~a~v~lalPL~ivtmasQnlpG~aVL~a~GY----~~p~~~~~~~tGl~s~l~ApfGg~~------~nlAa 266 (378)
T PF03594_consen 197 VFTTPEFSWSALVSLALPLFIVTMASQNLPGIAVLRAAGY----QPPVNPLITVTGLASLLAAPFGGHA------VNLAA 266 (378)
T ss_pred EEECCcccHHHHHHHHHHHHHHHHHhcchHHHHHHHHcCC----CCCchHHHHHHHHHHHHHhhhchhh------hHHHH
Confidence 567799999998876 589999999888888888887764 4568999999999999999999996 56655
Q ss_pred hhhccC---------CchhH-HHHHHHHHHHHHHhh-HHHHHHHhCCHHHHHH-HHHHHHHHHHH
Q 009579 355 LALTRV---------GSRRV-VQISAGFMIFFSVLG-KFGAVFASIPAPIVAA-LYCLFFAYVGA 407 (531)
Q Consensus 355 i~~Tgv---------~SR~~-~~~ag~~li~lg~~p-k~~~li~~IP~~Vlgg-~li~~fg~i~~ 407 (531)
+...=| ..||. .+.+|++.+++|++. .+..++...|.+.+.. +-+.+++.+..
T Consensus 267 itaAIc~g~eah~dp~rRy~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~lAGLALlg~l~~ 331 (378)
T PF03594_consen 267 ITAAICAGPEAHPDPSRRYIAAVAAGVFYLLFGLFAAALVALFAALPPALIAALAGLALLGTLGG 331 (378)
T ss_pred HHHHHHcCCccCCCcccchHHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 543211 23664 588999999999996 6889999999998888 46666676654
No 13
>PRK11660 putative transporter; Provisional
Probab=99.84 E-value=1.4e-18 Score=192.81 Aligned_cols=321 Identities=15% Similarity=0.210 Sum_probs=209.5
Q ss_pred ChHHHHHHHHHHHHHhhceeehhHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceeEccccchHHHHHHH
Q 009579 33 PWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISI 112 (531)
Q Consensus 33 p~~~~i~~GlQh~lam~~~~i~vP~il~~a~gl~~~~~~~li~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~i~~~~~i 112 (531)
.+...+.+|+.-.+..++-.++...+ .|+++ +..+..+-+++++-+++|..--++.||..+.......+
T Consensus 28 ~l~~D~iAGltv~~~~iPq~mayA~l----ag~pp-------~~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~~ 96 (568)
T PRK11660 28 RFTRDLIAGITVGIIAIPLAMALAIA----SGVPP-------QYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPV 96 (568)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH----cCCCh-------HHHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHHH
Confidence 47789999999877655444444422 78888 46788899999999999877778999976543332333
Q ss_pred HHhcCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCcccHHHHHHHHHHHhhhhhccCc-----
Q 009579 113 ILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGV----- 187 (531)
Q Consensus 113 ~~~~g~~~~~~~~~~~~~~~~~~~~gavlvaGvl~illg~~g~~~~l~~~~Pp~V~G~~i~lIGl~l~~~~~~~~----- 187 (531)
.+++ +++.+..+.+++|++++++|++|+ +++.+++|..|+..++..+|+.++..+++.+
T Consensus 97 ~~~~---------------~~~~~~~~~~l~Gii~~l~gllrl-G~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~lG~~~ 160 (568)
T PRK11660 97 SQQF---------------GLAGLLVATLMSGIILILMGLARL-GRLIEYIPLSVTLGFTSGIGIVIATLQIKDFFGLQM 160 (568)
T ss_pred HHHh---------------hHHHHHHHHHHHHHHHHHHHHHhh-hHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3222 455677789999999999999997 8999999988888888888886554443221
Q ss_pred ---ch----------------hh---hhHHHHHHHHHHHHHhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhccCCC
Q 009579 188 ---AK----------------CV---EIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYN 245 (531)
Q Consensus 188 ---~~----------------~~---~i~l~~l~~~i~~~~~~~~~~~~~~~~lr~~aiLigivvG~i~a~~~g~~~~~~ 245 (531)
+. +| .+++.++++++++ +++ ..|.+..++++++++++++.++..+ ++
T Consensus 161 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~lll~~----~~~------~~~iP~~li~iiv~t~~~~~~~~~~-~~ 229 (568)
T PRK11660 161 AHVPEHYLEKVGALFQALPTINWGDALIGIVTLGVLILW----PRL------KIRLPGHLPALLAGTAVMGVLNLLG-GH 229 (568)
T ss_pred CCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH----Hhh------cccCchHHHHHHHHHHHHHHHhccC-CC
Confidence 00 11 2334444433332 322 1245667889999999888776421 10
Q ss_pred CCCccCccc---ccc-CcC---CccCCCCcccCCccc-cc-ccc-cccHHH----HHHHHHHHHHHHHHhHHHHHHHHhH
Q 009579 246 DAAPKTQAS---CRT-DRA---GLIDAAPWIRVPWPF-QW-GAP-SFDAGE----AFAMMMASFVALVESTGAFFAVARY 311 (531)
Q Consensus 246 ~~~~~~~~~---~~~-d~~---~~v~~ap~~~~P~~~-~~-g~P-~f~~~~----il~~~~~~iv~~~esig~~~av~~~ 311 (531)
.+ ..++ ... |-. ......|-+.+|... ++ +.+ .++|+. +...+.++++..+|++....+.++.
T Consensus 230 v~---~vg~~~~~~~~~g~~~~~ip~~~p~~~~p~~~~~~~~~~~~~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~ 306 (568)
T PRK11660 230 VA---TIGSRFHYVLADGSQGNGIPPLLPQFVLPWNLPGADGQPFTLSWDLIRALLPAAFSMAMLGAIESLLCAVVLDGM 306 (568)
T ss_pred ce---eecccccccccccccccCCCCCCCCCCCCccccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 0000 000 000 000001112222100 00 000 235544 4445678899999999888888877
Q ss_pred hcCCCCCCcCCCcchhhhhhHHHhhhhcCCCCCcccccchhhhhhhccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCCH
Q 009579 312 ASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPA 391 (531)
Q Consensus 312 ~~~~~~~~~~~~r~l~adGl~~ilaglfG~~~~tt~s~~n~g~i~~Tgv~SR~~~~~ag~~li~lg~~pk~~~li~~IP~ 391 (531)
.++ +.+.||++.++|++|+++|+||++|.+++. ....+...+|.++|.+.+++++++++.-++ ++.++..||.
T Consensus 307 ~~~----~~d~n~EL~a~G~aNi~~~~fgg~p~~~s~-srSa~n~~aGarT~la~iv~a~~~ll~ll~--l~~ll~~iP~ 379 (568)
T PRK11660 307 TGT----KHSANSELVGQGLGNIVAPFFGGITATAAI-ARSAANVRAGATSPISAVIHALLVLLALLV--LAPLLSYLPL 379 (568)
T ss_pred cCC----CCCCcHHHHHHhHHHHHHHHhCcccccchH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHH--HHHHHHhCcH
Confidence 653 457899999999999999999999999987 455666778999999998877766443221 3349999999
Q ss_pred HHHHHHHHHH
Q 009579 392 PIVAALYCLF 401 (531)
Q Consensus 392 ~Vlgg~li~~ 401 (531)
+++++++++.
T Consensus 380 ~vLa~ili~~ 389 (568)
T PRK11660 380 SAMAALLLMV 389 (568)
T ss_pred HHHHHHHHHH
Confidence 9999998863
No 14
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=99.83 E-value=2e-18 Score=191.54 Aligned_cols=323 Identities=15% Similarity=0.155 Sum_probs=216.3
Q ss_pred hHHHHHHHHHHHHHhhceeehhHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceeEccccchHHHHHHHH
Q 009579 34 WPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISII 113 (531)
Q Consensus 34 ~~~~i~~GlQh~lam~~~~i~vP~il~~a~gl~~~~~~~li~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~i~~~~~i~ 113 (531)
+...+++|+.-.+..++-.++...+ .|+++ ...+.++.+..++-+++|...-++.||..+.-..+.++.
T Consensus 14 l~~Di~aGltv~~~~iP~~~ayA~l----aglpp-------~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~~v 82 (563)
T TIGR00815 14 FKGDLMAGLTVGILLIPQAMAYAIL----AGLSP-------IYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGSVI 82 (563)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH----cCCCc-------hhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHHHH
Confidence 6789999999876554443333322 78998 467888999999999999877788999754443334444
Q ss_pred HhcCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCcccHHHHHHHHHHHhhhhhccCc------
Q 009579 114 LAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGV------ 187 (531)
Q Consensus 114 ~~~g~~~~~~~~~~~~~~~~~~~~gavlvaGvl~illg~~g~~~~l~~~~Pp~V~G~~i~lIGl~l~~~~~~~~------ 187 (531)
.+++..+ .++ .+..+.+....+++|++++++|++|+ +++.+++|..|+..++..+|+.++..+++.+
T Consensus 83 ~~~~~~~---~~~---~~~~~~a~~l~~l~Gi~~~~~g~lrl-G~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~~~ 155 (563)
T TIGR00815 83 ARVGLQY---LFD---CDAIRLAFTLTLLAGIFQVILGLLRL-GFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGISIF 155 (563)
T ss_pred HHhcCCC---Ccc---cHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4443211 100 13456677889999999999999998 9999999998888888888887664433211
Q ss_pred -----------------ch----hhhhHHHHHHHHHHHHHhhhhhhhcccc--chhhhHHHHHHHHHHHHHHHHHhccCC
Q 009579 188 -----------------AK----CVEIGLPQLVIIVFISQYLPHVIKRGKN--IFDRFAVIFSVVIVWIYAHLLTVGGAY 244 (531)
Q Consensus 188 -----------------~~----~~~i~l~~l~~~i~~~~~~~~~~~~~~~--~lr~~aiLigivvG~i~a~~~g~~~~~ 244 (531)
.+ +|......++.++++ ...|++.++.++ +...+..|+.+++++++.+.+... .+
T Consensus 156 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~l-~~~~~~~~~~~~~~~~~~p~~li~vi~~~~~~~~~~~~-~~ 233 (563)
T TIGR00815 156 NTRTDTLGVVISTWAGLPNTHNWNWCTLVIGLVLLLFL-LYTKKLGKRNKKLLFAPAVAPLLVVILATLAVTIGLHK-KQ 233 (563)
T ss_pred CCCCChHHHHHHHHHHhhhccccchHHHHHHHHHHHHH-HHHHHhhhhccchhcccccHHHHHHHHHHHHHHHHccC-CC
Confidence 00 221111212111111 122333211111 122356788888888877665321 00
Q ss_pred CCCCccCccccccCcCCccCCCCcccCCcccccccccccHHH----HHHHHHHHHHHHHHhHHHHHHHHhHhcCCCCCCc
Q 009579 245 NDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGE----AFAMMMASFVALVESTGAFFAVARYASATPMPPS 320 (531)
Q Consensus 245 ~~~~~~~~~~~~~d~~~~v~~ap~~~~P~~~~~g~P~f~~~~----il~~~~~~iv~~~esig~~~av~~~~~~~~~~~~ 320 (531)
. +.. +.+.|- .+| .+..|.+|+.. +...+.+++++++|++...++.++..++ +.
T Consensus 234 ~-----------~~~---~g~ip~-g~p---~~~~~~~~~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~----~~ 291 (563)
T TIGR00815 234 G-----------VSI---LGHIPS-GLS---FFPPITLDWELLPTLAPDAIAIAIVGLIESIAIARSFARMTGY----KI 291 (563)
T ss_pred C-----------eEE---EeecCC-CCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CC
Confidence 0 111 111111 122 23345566544 4445789999999999999999887654 45
Q ss_pred CCCcchhhhhhHHHhhhhcCCCCCcccccchhhhhhhccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHHH
Q 009579 321 VLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCL 400 (531)
Q Consensus 321 ~~~r~l~adGl~~ilaglfG~~~~tt~s~~n~g~i~~Tgv~SR~~~~~ag~~li~lg~~pk~~~li~~IP~~Vlgg~li~ 400 (531)
+.||++.++|++|+++++||++|.+... ....+...+|.++|.+.++++++++++.++ ++.++..+|.+++++++++
T Consensus 292 d~n~El~a~G~~N~~~~~fg~~p~~~s~-srs~~~~~~G~~t~~a~i~~~~~~l~~~l~--~~~~l~~iP~~~la~ili~ 368 (563)
T TIGR00815 292 DANQELVAQGIANIVGSFFSCYPATGSL-SRTAVNAKAGCRTQLSGVVTAIVVLLVLLV--LTPLFYYIPQAALAAIIIS 368 (563)
T ss_pred CCcHHHHHhhHHHHHHHHhCccCCCCcc-hHHHHHHhcCCcchHHHHHHHHHHHHHHHH--HHHHHHhChHHHHHHHHHH
Confidence 7899999999999999999999999887 566677789999999999988887666554 4569999999999999886
Q ss_pred H
Q 009579 401 F 401 (531)
Q Consensus 401 ~ 401 (531)
.
T Consensus 369 ~ 369 (563)
T TIGR00815 369 A 369 (563)
T ss_pred H
Confidence 3
No 15
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.83 E-value=7.8e-18 Score=169.77 Aligned_cols=313 Identities=21% Similarity=0.277 Sum_probs=234.7
Q ss_pred HHHHHHHHHHHHHhhceeehhHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceeEccccchHHHHHHHHH
Q 009579 35 PEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIIL 114 (531)
Q Consensus 35 ~~~i~~GlQh~lam~~~~i~vP~il~~a~gl~~~~~~~li~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~i~~~~~i~~ 114 (531)
.+++..|++.++.-+++.+++-+--+++.|.+++|++.++.+-.+.+|+.|+.-++. .|.|++.++|--.. ..++.
T Consensus 20 p~~l~ag~va~~vG~~~s~aii~~aa~a~gas~aq~aSwl~al~l~mGv~ti~Ls~~-yR~Pv~~aWSTPG~---all~a 95 (402)
T COG3135 20 PQTLLAGFVAVLVGYASSLAIIIQAAQAAGASPAQIASWLTALGLAMGVSTLTLSLR-YRVPVLTAWSTPGA---ALLVA 95 (402)
T ss_pred chhhhhhhHHheeccCccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhh-hccceeeeecCccH---HHHHh
Confidence 368899999999999888776665566799999999999999999999999999986 89999988873322 22332
Q ss_pred h-cCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCcccHHHHHHHHHHHhhhhhccCcchhhhh
Q 009579 115 A-GRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAKCVEI 193 (531)
Q Consensus 115 ~-~g~~~~~~~~~~~~~~~~~~~~gavlvaGvl~illg~~g~~~~l~~~~Pp~V~G~~i~lIGl~l~~~~~~~~~~~~~i 193 (531)
+ .+ .++.++.|+.+++|++.++.|.+|.++|+.+.+||.+...++..|=+...-.+++...+++.+
T Consensus 96 sl~g-------------~s~~eaVGAfiVt~~li~l~G~~~~l~rl~~~IP~sla~AmlAGILL~F~l~a~~a~~~~p~l 162 (402)
T COG3135 96 SLGG-------------LSFAEAVGAFIVTGALIILCGLTGPLTRLMRIIPPSLAAAMLAGILLRFGLKAFKALPTQPLL 162 (402)
T ss_pred ccCC-------------CCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhccCCChHH
Confidence 2 22 368999999999999999999999999999999998777766644333344444555566666
Q ss_pred HHHHHHHHHHHHHhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCccccccCcCCccCCCCcccCCc
Q 009579 194 GLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPW 273 (531)
Q Consensus 194 ~l~~l~~~i~~~~~~~~~~~~~~~~lr~~aiLigivvG~i~a~~~g~~~~~~~~~~~~~~~~~~d~~~~v~~ap~~~~P~ 273 (531)
.+..++..++. |. +-..++++..+++|..++...|... . .+ ..+-.+.|
T Consensus 163 ~lpmv~~~ll~----r~-------f~pr~aV~aalvvgv~va~~~G~~~---~----------~~------~~~~~~~p- 211 (402)
T COG3135 163 VLPMVLAYLLA----RV-------FAPRYAVIAALVVGVLVAALLGDLH---T----------AL------VALEISTP- 211 (402)
T ss_pred HHHHHHHHHHH----HH-------cCchHHHHHHHHHHHHHHHHhCccc---c----------cc------cccccCcc-
Confidence 65555444333 32 2358899999999999998886421 0 11 12223334
Q ss_pred ccccccccccHHHHHHH-HHHHHHHHHHhHHHHHHHHhHhcCCCCCCcCCCcchhhhhhHHHhhhhcCCCCCcccccchh
Q 009579 274 PFQWGAPSFDAGEAFAM-MMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENA 352 (531)
Q Consensus 274 ~~~~g~P~f~~~~il~~-~~~~iv~~~esig~~~av~~~~~~~~~~~~~~~r~l~adGl~~ilaglfG~~~~tt~s~~n~ 352 (531)
.|-.|+|++.+++.. ++++++.|......-.++-|.+|. ++..+.-+.+.|+.+++++.||+.. -|.
T Consensus 212 --~~v~P~Fs~~A~l~lalPL~lvtmasQN~pGiAvLka~gY----~pp~~pl~~~TGl~sll~ApfG~~t------~nL 279 (402)
T COG3135 212 --TWVTPEFSFAAMLSLALPLFLVTMASQNLPGIAVLKAAGY----QPPPSPLIVATGLASLLSAPFGGHT------VNL 279 (402)
T ss_pred --eeeCCcccHHHHHHHhHHHHHHHHHhccCccceeehhcCC----CCCCchHHHHhHHHHHHhcccccce------ecH
Confidence 566799999998886 489999999888887787777664 3457788999999999999999985 455
Q ss_pred hhhhhccCC---------chh-HHHHHHHHHHHHHHhh-HHHHHHHhCCHHHHHH-HHHHHHHHHHH
Q 009579 353 GLLALTRVG---------SRR-VVQISAGFMIFFSVLG-KFGAVFASIPAPIVAA-LYCLFFAYVGA 407 (531)
Q Consensus 353 g~i~~Tgv~---------SR~-~~~~ag~~li~lg~~p-k~~~li~~IP~~Vlgg-~li~~fg~i~~ 407 (531)
+.|...=|. .|| +...+|++-+++|+|. .+.+++...|.+.+.. +-+.+.+.+..
T Consensus 280 aAItAAic~gpdaHpD~~rry~Aa~~agi~ylv~GlF~~~~~~l~~alP~~li~~lAGLALlg~~~~ 346 (402)
T COG3135 280 AAITAAICTGPDAHPDPARRYTAALVAGIFYLLAGLFGGALVGLMAALPASLIAALAGLALLGTLGN 346 (402)
T ss_pred HHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHH
Confidence 555543332 255 4588999999999996 7999999999998877 35555565544
No 16
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.54 E-value=3.4e-14 Score=143.98 Aligned_cols=239 Identities=19% Similarity=0.212 Sum_probs=154.2
Q ss_pred HhhhhhHHHHHhhcCcccHHHHHHHHHHHhhhhhccCcc-----------------------h--hh---hhHHHHHHHH
Q 009579 150 LGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVA-----------------------K--CV---EIGLPQLVII 201 (531)
Q Consensus 150 lg~~g~~~~l~~~~Pp~V~G~~i~lIGl~l~~~~~~~~~-----------------------~--~~---~i~l~~l~~~ 201 (531)
+|++|+ +++.+++|..|+..++..+|+.++..+++++- + +| .++..++.++
T Consensus 1 lGllrl-G~l~~~ip~pVi~Gf~~g~ai~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 79 (280)
T PF00916_consen 1 LGLLRL-GFLVRFIPRPVISGFLAGIAILIIFSQLPNLLGIPVVPSHEGLFSFIRALFQLISTITNWPTLAIGLVALVFL 79 (280)
T ss_pred Cccccc-cHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhccchhhhhhhhHHHHHH
Confidence 467887 99999999988888899889877655443210 0 11 1122222222
Q ss_pred HHHHHhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCccccccCc-CCccCCCCcccCCcccccccc
Q 009579 202 VFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDR-AGLIDAAPWIRVPWPFQWGAP 280 (531)
Q Consensus 202 i~~~~~~~~~~~~~~~~lr~~aiLigivvG~i~a~~~g~~~~~~~~~~~~~~~~~~d~-~~~v~~ap~~~~P~~~~~g~P 280 (531)
. +.++.++. ...+.+.+.+..++.+++++++++...... + .++. .+....-|.+.+|. .
T Consensus 80 ~-~~~~~~~~-~~~~~~~~~p~~li~vv~~~~~~~~~~~~~-~-----------~v~~~~~i~~~lp~~~~p~-~----- 139 (280)
T PF00916_consen 80 L-IIRLLPKR-LPSRFWPPIPAPLIVVVLGTLLSWLFLLDK-Y-----------GVAIVGEIPSGLPPPSLPS-F----- 139 (280)
T ss_pred h-hhhhhhhh-ccccccccccccceeeehhhhhhhhhhhcc-c-----------cccccccccccCccccCcc-c-----
Confidence 2 11222210 011223445667888888888877664311 0 0111 11111233344442 1
Q ss_pred cccH----HHHHHHHHHHHHHHHHhHHHHHHHHhHhcCCCCCCcCCCcchhhhhhHHHhhhhcCCCCCcccccchhhhhh
Q 009579 281 SFDA----GEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLA 356 (531)
Q Consensus 281 ~f~~----~~il~~~~~~iv~~~esig~~~av~~~~~~~~~~~~~~~r~l~adGl~~ilaglfG~~~~tt~s~~n~g~i~ 356 (531)
.+++ ..+...+.++++..+|++.+.++.++..++ +.+.||+++++|++|+++|+||++|.+... .+..+..
T Consensus 140 ~~~~~~~~~~~~~a~~ia~v~~~~s~~~~~~~~~~~~~----~~d~n~El~a~G~aNi~s~~~gg~p~~~s~-srs~~~~ 214 (280)
T PF00916_consen 140 DISWSLILDLLPTALAIAIVGFIESLLIAKSIAKKTGY----RIDPNQELIALGLANIVSGLFGGMPGSGSF-SRSAVNY 214 (280)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhhhhhcccccc----cCCcHHHHHHhhhccccchhhccccccccc-ccchHHH
Confidence 2333 334556789999999999998888876553 457999999999999999999999999888 6666777
Q ss_pred hccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHHH-HHHHHHHhhhhhhhhc
Q 009579 357 LTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCL-FFAYVGAGGLSFLQFC 416 (531)
Q Consensus 357 ~Tgv~SR~~~~~ag~~li~lg~~pk~~~li~~IP~~Vlgg~li~-~fg~i~~~Gi~~l~~~ 416 (531)
.+|.+||.+.++++++++++-++ ++.++..+|.+++++++++ .+.++-..-++.+.|.
T Consensus 215 ~~Ga~t~~s~~~~~~~~l~~l~~--~~~~l~~iP~~~La~ili~~~~~l~~~~~~~~~~~~ 273 (280)
T PF00916_consen 215 RAGARTRLSGLISALFVLLVLLF--LAPLLAYIPKAVLAAILIVVGISLIDWSSLRRLWRV 273 (280)
T ss_pred hcCcceeehhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcC
Confidence 89999999998888877554332 4469999999999998875 4555555555554443
No 17
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=99.40 E-value=7.9e-11 Score=132.59 Aligned_cols=315 Identities=16% Similarity=0.179 Sum_probs=198.3
Q ss_pred eeehhHHHhhhh--cCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceeEccccchHHHHHH-HHHhcCCCCCCCCCch
Q 009579 51 TTVLIPTSLVPQ--MGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTIS-IILAGRFSNYSGDPVE 127 (531)
Q Consensus 51 ~~i~vP~il~~a--~gl~~~~~~~li~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~i~~~~~-i~~~~g~~~~~~~~~~ 127 (531)
+.+.+|--++-+ +|+++ ...+..+-++.++=.+||+--++-.||.. .+..+.. +..+. .... .+..
T Consensus 91 g~l~VPQ~iaYa~la~lpp-------iyGLYssf~~~~iY~~fGtsr~isiG~~a-v~sLmv~~~v~~~-v~~~--~~~~ 159 (665)
T KOG0236|consen 91 GSLSVPQGLAYALLAGLPP-------IYGLYSSFFPPLIYAIFGTSRHVSIGPFA-VVSLMVGTVVSQV-VLSE--APSN 159 (665)
T ss_pred eeeecchHHHHHHHcCCCh-------HHHHHHHHHHHHHheeccCCCcccccHHH-HHHHHHHHHHHHH-Hhcc--CCCc
Confidence 345566655543 67777 57888899999999999988888888831 2221111 01110 0000 0000
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCcccHHHHHHHHHHHhhhhhccC------cc-------------
Q 009579 128 KFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPG------VA------------- 188 (531)
Q Consensus 128 ~~~~~~~~~~gavlvaGvl~illg~~g~~~~l~~~~Pp~V~G~~i~lIGl~l~~~~~~~------~~------------- 188 (531)
.....++.+...++++|++|+++|++|+ +.+.+++|..++..++...++.+...+++. ..
T Consensus 160 ~~~~~i~va~~lt~l~Giiq~~mG~lrL-Gfl~~~lS~~~l~GFt~gaa~~I~~sQlk~llGi~~~~~~~~~~~~~~~~~ 238 (665)
T KOG0236|consen 160 DIATTIQVATTLTFLTGIIQLILGLLRL-GFLVRFLSEPALSGFTTGAALHIVTSQLKVLLGITSFPRHSGPGSIVFIVF 238 (665)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHccHHHHhHhhhhhhhhhhHHhhHhhccccccCCCCCceeEEEeeH
Confidence 0124678888999999999999999998 999999997666556665566544333321 11
Q ss_pred ----h------hhhhHHHHHHHHHHHHH-hhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCcccccc
Q 009579 189 ----K------CVEIGLPQLVIIVFISQ-YLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRT 257 (531)
Q Consensus 189 ----~------~~~i~l~~l~~~i~~~~-~~~~~~~~~~~~lr~~aiLigivvG~i~a~~~g~~~~~~~~~~~~~~~~~~ 257 (531)
. ++.+++..+++++ +.+ +.++.. ++-.+.....-++.+++++++++.+.....+.. ..+
T Consensus 239 ~~~~~~~~~~~~~~~~l~~l~~L~-~~k~~~~~~~-~k~~~v~~~~~li~vIi~T~~~~~~~~~~~~~~--------~~~ 308 (665)
T KOG0236|consen 239 DLLANLPKTLATLVLSLIFLVVLL-LTKELNPKFK-KKLFSVPIPFELIVVIIGTLISYIFRLEGRYGP--------IIV 308 (665)
T ss_pred HhhhcccccchhhhhHHHHHHHHH-HHHHhhhhhc-ccceeecccHHHHHHHHHHHHHHHhccccccCC--------eee
Confidence 0 1223333333332 222 222211 111123455688999999999888865321110 011
Q ss_pred CcCCccCCCCcccCCcccccccccccHHHHHHHHHHHHHHHHHhHHHHHHHHhHhcCCCCCCcCCCcchhhhhhHHHhhh
Q 009579 258 DRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSG 337 (531)
Q Consensus 258 d~~~~v~~ap~~~~P~~~~~g~P~f~~~~il~~~~~~iv~~~esig~~~av~~~~~~~~~~~~~~~r~l~adGl~~ilag 337 (531)
+ ......|...+|. +.+....+...+.++++++.|+++--++.++..+. +-+-||+++|-|++|++++
T Consensus 309 ~--~i~~g~~~~~lp~------~~~~~~~~~~~~~i~iva~~~~iai~k~fa~~~~y----~vd~nqELiAlG~~Ni~sS 376 (665)
T KOG0236|consen 309 G--EIPRGFPPPSLPP------LSLTPQVIPDAFAIAIVALLEHIAIGKSFASLHGY----KVDSNQELIALGISNILSS 376 (665)
T ss_pred c--cCCCCCCCCCCCC------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----eeCCChHHHHHHHHHHhhh
Confidence 1 0011122222221 12223456668899999999998877777776543 3568999999999999999
Q ss_pred hcCCCCCcccccchhhhhhhccCCchhHHHHHHHHH-HHHHHhhHHHHHHHhCCHHHHHHHHHH-HHH
Q 009579 338 LFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFM-IFFSVLGKFGAVFASIPAPIVAALYCL-FFA 403 (531)
Q Consensus 338 lfG~~~~tt~s~~n~g~i~~Tgv~SR~~~~~ag~~l-i~lg~~pk~~~li~~IP~~Vlgg~li~-~fg 403 (531)
+|++.|.|... .+..+-..+|++++.+.++.++.. +.+-+ ++.++..+|.++++++.+. +.+
T Consensus 377 ff~~~p~tgs~-sRSav~~~sG~~T~~s~i~~~~~vl~~l~~---l~p~f~~iP~~vLaaIIi~a~~~ 440 (665)
T KOG0236|consen 377 FFGCYPTTGSF-SRSAVNIKSGGRTQVAGIVSAALVLLALLF---LGPLFYYIPKCVLAAIIISALIG 440 (665)
T ss_pred hhceEcccchh-hHHHHHhhcCCcchHHHHHHHHHHHHHHHH---HHHHhhhhhHHHHHHHHHHHhhH
Confidence 99999999888 788888899999999876655544 33333 4569999999999998774 444
No 18
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=98.61 E-value=4.1e-05 Score=88.17 Aligned_cols=314 Identities=15% Similarity=0.167 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcceeEcccc---chHHHHHHHHHhcCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHH
Q 009579 74 IQTLLFVAGLNTLLQSLFGTRLPAVMGGSY---TFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVL 150 (531)
Q Consensus 74 i~atll~sGi~Tllq~~~G~rlPiv~Gpsf---a~i~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~gavlvaGvl~ill 150 (531)
++=+++.++++.++.++++..--++.|++. .|.-.+..++..++. +=++.-.=..+.++++.+++
T Consensus 403 v~E~Llstai~Giifslf~GQPL~IlG~TGPilvF~~~ly~~c~~~~~------------~yl~~~~WigiW~~~~~~ll 470 (900)
T TIGR00834 403 VSELLISTAVQGVLFALLAAQPLLVVGFSGPLLVFEEAFFSFCESNGL------------EYLVGRVWIGLWLVLLVLLL 470 (900)
T ss_pred HHHHHHHHHHHHHHHhhhcCCceEEecCcccHHHHHHHHHHHHhhcCC------------chHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999655555667653 233233334433322 01222222356777888888
Q ss_pred hhhhhHHHHHhhcCcccHHHHHHHHHHHhhhhhccCcc------------------------------------------
Q 009579 151 GFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVA------------------------------------------ 188 (531)
Q Consensus 151 g~~g~~~~l~~~~Pp~V~G~~i~lIGl~l~~~~~~~~~------------------------------------------ 188 (531)
+.+.. ..+.|+++.-.-=.+-++|++..+..+++.+-
T Consensus 471 a~~~~-s~lvryiTRFTeEiFa~lIs~IFI~eai~~L~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (900)
T TIGR00834 471 VATEG-SFLVRYISRFTQEIFSFLISLIFIYETFSKLIKIFQEHPLQVFYNTLFCVPPKPQGPSVSALLEKDCSKLGGTL 549 (900)
T ss_pred HHHhH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccccc
Confidence 88876 78888888754444444444433322221100
Q ss_pred ---hh---hhhHHHHHHH---HHHHHHhhhhhhh------ccccchhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCcc
Q 009579 189 ---KC---VEIGLPQLVI---IVFISQYLPHVIK------RGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQA 253 (531)
Q Consensus 189 ---~~---~~i~l~~l~~---~i~~~~~~~~~~~------~~~~~lr~~aiLigivvG~i~a~~~g~~~~~~~~~~~~~~ 253 (531)
.+ ...++..+++ ++.+..+++++.. +-|+.+.-+++.|++++-+.+.+.++.. +-.
T Consensus 550 ~~~~c~~~~~~~llsliL~lgTf~~a~~L~~fk~s~yf~~~vR~~isDfgv~iaI~~~t~v~~~~~~v--~~~------- 620 (900)
T TIGR00834 550 GGNNCRFQPNTALLSLVLMLGTFFLAMFLRKFKNSRYFPGKARRLIGDFGVPISILIMVLVDIFIGDT--YTQ------- 620 (900)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCcCCchhhhhhhhhhHHHHHHHHHHHHHHhccC--ccc-------
Confidence 00 1223333222 3333445555431 1244555678999999988887765421 000
Q ss_pred ccccC----cCCcc-CCCCcccCCccccccccccc-HHHHHHHHHHHHHHHHHhHHHHHHHHhHhcCCCCCCcCCCcchh
Q 009579 254 SCRTD----RAGLI-DAAPWIRVPWPFQWGAPSFD-AGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVG 327 (531)
Q Consensus 254 ~~~~d----~~~~v-~~ap~~~~P~~~~~g~P~f~-~~~il~~~~~~iv~~~esig~~~av~~~~~~~~~~~~~~~r~l~ 327 (531)
+.+ +...- ..-.|+--|.......|.+. +.++++.+.+++.-++|+-=+..-+++. +.+-++....+=.++
T Consensus 621 --kl~Vp~~f~pt~p~~R~W~i~p~~~~~~~p~w~~~~A~iPAlll~ILiFmD~nIts~iv~~~-e~kLkKgsgyH~Dll 697 (900)
T TIGR00834 621 --KLSVPSGLKVTNPSARGWFIPPLGENRPFPWWMMFAAALPALLVFILIFMEQQITTLIVSKK-ERKLKKGSGFHLDLL 697 (900)
T ss_pred --ccCCCCCcCCCCCCCCCeEEccccccccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcCc-cccCCCCcccchHHH
Confidence 011 11000 01245422210000012222 4567777788888888876544444432 223334456777899
Q ss_pred hhhhHHHhhhhcCCCCCcccccchhhhhh-h---------------ccCCc-hhHHHHHHHHHHHHHHhhHHHHHHHhCC
Q 009579 328 WQGVGILLSGLFGTVNGTSVSVENAGLLA-L---------------TRVGS-RRVVQISAGFMIFFSVLGKFGAVFASIP 390 (531)
Q Consensus 328 adGl~~ilaglfG~~~~tt~s~~n~g~i~-~---------------Tgv~S-R~~~~~ag~~li~lg~~pk~~~li~~IP 390 (531)
.-|+-+.++|++|-...++...++.-.+. + .+|+. |.+....+++. -+++ -+..++..||
T Consensus 698 llg~~~~v~sllGLPw~~aatv~S~~Hv~sL~v~~~~~~~Ge~~~i~~V~EQRvT~ll~~lLi-glsv--~~~PvL~~IP 774 (900)
T TIGR00834 698 LVVGMGGVAALFGLPWLSAATVRSVTHANALTVMSKASAPGEKAQIQEVREQRVTGLLVAVLV-GLSI--LMEPILKRIP 774 (900)
T ss_pred HHHHHHHHHHhcCCCcccccCCcChhhHhHHeeeeeccCCCCCCccceeEeeehHHHHHHHHH-HHHH--HHHHHHhhcc
Confidence 99999999999998876665433332221 1 12332 55555555433 2221 1334899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhc
Q 009579 391 APIVAALYCLFFAYVGAGGLSFLQFC 416 (531)
Q Consensus 391 ~~Vlgg~li~~fg~i~~~Gi~~l~~~ 416 (531)
.+|+.|+++|| |.-...|.|+..|+
T Consensus 775 ~aVL~GvFlYM-Gv~SL~GnQ~~~Ri 799 (900)
T TIGR00834 775 LAVLFGIFLYM-GVTSLSGIQLFDRL 799 (900)
T ss_pred HHHHHHHHHHH-HHhhcccCHHHHHH
Confidence 99999999997 88888888887765
No 19
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=98.41 E-value=0.00019 Score=81.17 Aligned_cols=314 Identities=13% Similarity=0.116 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcceeEccccc---hHHHHHHHHHhcCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHH
Q 009579 72 KVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYT---FVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQI 148 (531)
Q Consensus 72 ~li~atll~sGi~Tllq~~~G~rlPiv~Gpsfa---~i~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~gavlvaGvl~i 148 (531)
.-++=+++.+.++.++.+++|..--++.|++.- |.-.++..+..++. +=++.-.=..+.+.++.+
T Consensus 392 ~~v~E~L~stal~GiifslfggQPLlIlg~TgP~lVfe~~lf~f~~~~~~------------dyl~~r~wVglW~~~l~i 459 (876)
T KOG1172|consen 392 IGVVETLLSTALCGIIFSLFGGQPLLILGVTGPLLVFEKALFKFCKDNGL------------DYLAFRAWVGLWTAFLLI 459 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHHHHhhCCC------------chhhHHHHHHHHHHHHHH
Confidence 445778999999999999998666677777632 22233444444432 112222333566777888
Q ss_pred HHhhhhhHHHHHhhcCc---ccHHHHHHHHHHHhhhhhcc-----------C--------------cc---------h--
Q 009579 149 VLGFSGLWRNVTRFLSP---LSVVPLISLVGFGLYEFGFP-----------G--------------VA---------K-- 189 (531)
Q Consensus 149 llg~~g~~~~l~~~~Pp---~V~G~~i~lIGl~l~~~~~~-----------~--------------~~---------~-- 189 (531)
+++.+.. ..+.++|+. ..-+..|++|=+. .++. + .. .
T Consensus 460 llaa~~a-s~lv~~~TRfteEiF~~LIs~iFi~---eai~kl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (876)
T KOG1172|consen 460 LLAATNA-SSLVKYITRFTEEIFGLLISLIFIY---EAIKKLIKIFKGLPIEFDSKPNPGADWSGPECESVSGTLLGSSC 535 (876)
T ss_pred HHHHhhh-hHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHhhcCcccccccCCcccccccccccccCcccCCCcC
Confidence 8888876 778888876 4555555544332 2211 0 00 0
Q ss_pred hhhhHHHHH---HHHHHHHHhhhhhhh--c----cccchhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCccccccCcC
Q 009579 190 CVEIGLPQL---VIIVFISQYLPHVIK--R----GKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRA 260 (531)
Q Consensus 190 ~~~i~l~~l---~~~i~~~~~~~~~~~--~----~~~~lr~~aiLigivvG~i~a~~~g~~~~~~~~~~~~~~~~~~d~~ 260 (531)
....++..+ +.++.+..++|++.. . .|.++.-+++.+.+++-..+....+.. ....-+ .+..++
T Consensus 536 ~p~~~llslil~~gt~~~a~~lr~fr~s~yf~~~~R~~isDfgvpisIl~~s~i~~~~~~~--~~~kl~-----vp~~~~ 608 (876)
T KOG1172|consen 536 RPDTALLSLILMFGTLFLALTLRKFKSSRYFPRKVRSLISDFGVPLSILVFSLIDYFGGSV--ETPKLP-----VPSVFP 608 (876)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHhhhhHHHHHHHHHHHhhcccc--CCCccc-----cCcCCC
Confidence 022333332 334444556666542 1 234455578999999888887766521 111000 000011
Q ss_pred CccCC-CCcccCCccccccccccc-HHHHHHHHHHHHHHHHHhHHHHHHHHhHhcCCCCCCcCCCcchhhhhhHHHhhhh
Q 009579 261 GLIDA-APWIRVPWPFQWGAPSFD-AGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGL 338 (531)
Q Consensus 261 ~~v~~-ap~~~~P~~~~~g~P~f~-~~~il~~~~~~iv~~~esig~~~av~~~~~~~~~~~~~~~r~l~adGl~~ilagl 338 (531)
..-.. -.|+-.|.- ..|.+. ..++++.+.+++.-++|+-=+..-+++. +.+-++....+=.++.-|+-+.++|+
T Consensus 609 ~t~~~~rgw~v~~~~---~~P~~~~~~A~ipalll~iLiFmDqqIts~iv~rk-e~kLKKgsgyH~DLlllgil~~icsl 684 (876)
T KOG1172|consen 609 PTWPFDRGWFVPPFG---KNPWWYVFAALIPALLLTILIFMDQQITAVIVNRK-ENKLKKGSGYHLDLLLLGILTLICSL 684 (876)
T ss_pred CCCcccCCeeeCCCC---CCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhhcc-cccCCCCcchhHHHHHHHHHHHHHHh
Confidence 10011 234433310 112221 3456666777788888865433333332 22333445677789999999999999
Q ss_pred cCCCCCcccccchhhhhhhc----------------cCCc-hhHHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHHHH
Q 009579 339 FGTVNGTSVSVENAGLLALT----------------RVGS-RRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLF 401 (531)
Q Consensus 339 fG~~~~tt~s~~n~g~i~~T----------------gv~S-R~~~~~ag~~li~lg~~pk~~~li~~IP~~Vlgg~li~~ 401 (531)
+|-...++...++.--+..= +|.. |.+....+++.. +.-.+..++..||.+|+.|+++||
T Consensus 685 lGLPw~~~a~p~S~~H~~SL~v~~~~~apge~~~i~~V~EQRvtgll~~llvg---ls~~~~pvL~~IP~~VL~GvFlYM 761 (876)
T KOG1172|consen 685 LGLPWSNAATVQSPMHTKSLAVESETSAPGEQPQIVGVREQRVTGLLQFLLVG---LSVLLLPVLKLIPMPVLYGVFLYM 761 (876)
T ss_pred cCCCccccccccCHHHHHHHHHhhcccCCCCccccccchhhhhHHHHHHHHHH---HHHHHHHHHhhccHHHHHHHHHHH
Confidence 99988877765665443321 2222 334444444433 222244589999999999999986
Q ss_pred HHHHHHhhhhhhhhc
Q 009579 402 FAYVGAGGLSFLQFC 416 (531)
Q Consensus 402 fg~i~~~Gi~~l~~~ 416 (531)
|.=...|.|...++
T Consensus 762 -gv~SL~Gnqf~eRl 775 (876)
T KOG1172|consen 762 -GVSSLPGNQFFERL 775 (876)
T ss_pred -hhccCCccHHHHHH
Confidence 66677777776654
No 20
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=97.95 E-value=0.003 Score=65.42 Aligned_cols=347 Identities=14% Similarity=0.146 Sum_probs=182.1
Q ss_pred CCcccccCCCCChHHHHHHHHHHHHHhhceeehhHHHhhhhcCCChHHHH------HHHHHHHHHHHHHHHHHHHhCCCc
Q 009579 22 PSISYCITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKA------KVIQTLLFVAGLNTLLQSLFGTRL 95 (531)
Q Consensus 22 ~~~~~~~~~~pp~~~~i~~GlQh~lam~~~~i~vP~il~~a~gl~~~~~~------~li~atll~sGi~Tllq~~~G~rl 95 (531)
+|..|+.||--|.. +|.---.+|+++. ....++.+|++++-.. .+|.+.+|+.=+.+++.= .+++
T Consensus 53 rD~rfE~ED~vPAl----AgtIGkivMvsAv---~aafA~~lgL~~~Fv~envR~EllI~a~lFvil~Sgfl~P--~anL 123 (492)
T PF11840_consen 53 RDYRFEWEDLVPAL----AGTIGKIVMVSAV---AAAFAAPLGLSPEFVIENVRYELLIAALLFVILFSGFLNP--RANL 123 (492)
T ss_pred cccccchHHhhHHH----HhhhhHHHHHHHH---HHHHhhccCCChhHhhhhhhhhhhHHHHHHHHHHHhccCc--cccc
Confidence 45666777765532 3433344454322 2233445788875333 233333344333333322 3566
Q ss_pred ceeEccccchHHHHHHHHHhcCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCcccHHHHHHHH
Q 009579 96 PAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLV 175 (531)
Q Consensus 96 Piv~Gpsfa~i~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~gavlvaGvl~illg~~g~~~~l~~~~Pp~V~G~~i~lI 175 (531)
+=-+||--..+|. ++++. +.+.++| ++-|++-++++++|--.|+.++=..-|.|..+..+
T Consensus 124 AGthgPmIpLIp~---ivaaG---------------gHPLalg--ilvg~fGlil~~~kggS~L~~LTs~gv~ggLllyl 183 (492)
T PF11840_consen 124 AGTHGPMIPLIPL---IVAAG---------------GHPLALG--ILVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYL 183 (492)
T ss_pred cCCCCCcchhhHH---HHHcC---------------CCcHHHH--HHHHHHHHHHHHhcchhHHHhhhcCccccceeeee
Confidence 6667775444443 33221 2244554 45688889999998888999999998888776666
Q ss_pred HHHhhhhhccC----cc--hhhhhHHHHHHHHHHHHHhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHhccCCCCCCc
Q 009579 176 GFGLYEFGFPG----VA--KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAP 249 (531)
Q Consensus 176 Gl~l~~~~~~~----~~--~~~~i~l~~l~~~i~~~~~~~~~~~~~~~~lr~~aiLigivvG~i~a~~~g~~~~~~~~~~ 249 (531)
|+.=....++. .. +...+++..+.+.+++..|+.++ .| |..++-++-+++-++++.+|.. ++...+
T Consensus 184 G~~G~~~qi~kl~~wa~~~~~~~i~fvvi~~tiv~Ya~L~k~---~K---rWLaIPl~~~~a~~~a~~lGa~--f~f~t~ 255 (492)
T PF11840_consen 184 GFVGLIGQIKKLFAWANGFDMGYIAFVVIIVTIVLYAYLAKI---EK---RWLAIPLCSILAGVLAFALGAP--FEFTTE 255 (492)
T ss_pred hhhhHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHh---cc---chhhhhHHHHHHHHHHHHcCCC--ceeecC
Confidence 66322112211 11 12356677766666666666554 23 3456666666666777777752 111000
Q ss_pred cCccccccCcCCccCCCCcccCCccccccccccc-HHHHHHHHHHHHH-HHHHhHHHHHHHHhHhcCCCCCC--cCCCcc
Q 009579 250 KTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFD-AGEAFAMMMASFV-ALVESTGAFFAVARYASATPMPP--SVLSRG 325 (531)
Q Consensus 250 ~~~~~~~~d~~~~v~~ap~~~~P~~~~~g~P~f~-~~~il~~~~~~iv-~~~esig~~~av~~~~~~~~~~~--~~~~r~ 325 (531)
.... ..+..=|..=-.-++.|+|.++ .-+.+++.+++.. =.-|.+|+-. -++.+-.+..++ -+++..
T Consensus 256 -------pglp-~lnP~YWWge~tGw~LglP~~~hfiav~PFAiLAVaMWSpDflghrv-Fqelnypk~~~kvlMnvDDT 326 (492)
T PF11840_consen 256 -------PGLP-NLNPMYWWGEETGWQLGLPTLEHFIAVLPFAILAVAMWSPDFLGHRV-FQELNYPKETKKVLMNVDDT 326 (492)
T ss_pred -------CCCC-CCCCcccccCCcccccCCCcHHHHHHhccHHHHHHHHhCchHHHHHH-HHHhcCchhhcceeecccch
Confidence 0000 0111112211122355677654 2334444433322 2345555422 333332111111 368889
Q ss_pred hhhhhhHHHhhhhcCCCCCcccccchhhhh-hhccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHHH-HHH
Q 009579 326 VGWQGVGILLSGLFGTVNGTSVSVENAGLL-ALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCL-FFA 403 (531)
Q Consensus 326 l~adGl~~ilaglfG~~~~tt~s~~n~g~i-~~Tgv~SR~~~~~ag~~li~lg~~pk~~~li~~IP~~Vlgg~li~-~fg 403 (531)
+....+=+++++.+|+-..++.- ..-=+- +..|.-=|--.+..|+++++.++..-= .=..+=.||+--++++ +|-
T Consensus 327 m~~~siRQ~vGs~lGGgN~~SsW-gTymIPaaIaKRPIpggAiLtg~~Ci~~av~GyP--Mdlavw~Pvl~vALlvGVfl 403 (492)
T PF11840_consen 327 MTMCSIRQIVGSILGGGNIASSW-GTYMIPAAIAKRPIPGGAILTGLLCIVAAVWGYP--MDLAVWPPVLRVALLVGVFL 403 (492)
T ss_pred hHHHHHHHHHhhcccCCcccccc-hhhhhhHHHhcCCCCchHHHHHHHHHHHHHhcCc--chhhhcccHHHHHHHHHHHH
Confidence 99999999999999997655443 211111 112222233357788888888776410 1112225666666665 666
Q ss_pred HHHHhhhhhhhhcc
Q 009579 404 YVGAGGLSFLQFCN 417 (531)
Q Consensus 404 ~i~~~Gi~~l~~~~ 417 (531)
-+.-+|+|+.++-+
T Consensus 404 PLleAGmqm~r~~k 417 (492)
T PF11840_consen 404 PLLEAGMQMTRKGK 417 (492)
T ss_pred HHHHHHHHHHhcCC
Confidence 67788999887544
No 21
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=96.88 E-value=0.0006 Score=74.63 Aligned_cols=186 Identities=13% Similarity=0.153 Sum_probs=2.4
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCccccccCcCCccCC-CCcccCCccccccccccc-HHHHHHHHHH
Q 009579 216 KNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDA-APWIRVPWPFQWGAPSFD-AGEAFAMMMA 293 (531)
Q Consensus 216 ~~~lr~~aiLigivvG~i~a~~~g~~~~~~~~~~~~~~~~~~d~~~~v~~-ap~~~~P~~~~~g~P~f~-~~~il~~~~~ 293 (531)
|+.+.-+++.|++++-+.+...++.. .+. -+ ...++.....+ -+|+--|. ...|.+. ..++++.+.+
T Consensus 277 R~~isDf~v~iaI~~~~~~~~~~~~~--~~k-L~-----vp~~f~pt~~~~r~W~v~p~---~~~p~w~~~aA~~palll 345 (510)
T PF00955_consen 277 REIISDFGVPIAILIMTLVDYLFGVD--TPK-LN-----VPSSFKPTSPGKRGWFVNPF---GSLPWWAIFAAIIPALLL 345 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhHHhhHHHHHHHHHHHHHHHhccc--ccc-cC-----CCCCCCCCCCCCCCeecCcc---cCCCHHHHHHHHHHHHHH
Confidence 45566678999999887776655421 000 00 00012110111 24553332 1123332 3455666677
Q ss_pred HHHHHHHhHHHHHHHHhHhcCCCCCCcCCCcchhhhhhHHHhhhhcCCCCCcccccchhhhhh----------------h
Q 009579 294 SFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLA----------------L 357 (531)
Q Consensus 294 ~iv~~~esig~~~av~~~~~~~~~~~~~~~r~l~adGl~~ilaglfG~~~~tt~s~~n~g~i~----------------~ 357 (531)
++.-.+|+-=+..-+++. +.+-++....+=.+..-|+-+.++|++|-...++...++.-.+. .
T Consensus 346 ~iL~F~DqnIts~ivn~~-e~kLkKg~gyH~DL~llgi~~~v~sllGLPw~~aa~~~S~~Hv~sL~~~~~~~~pGe~~~i 424 (510)
T PF00955_consen 346 TILFFMDQNITSLIVNRP-ENKLKKGSGYHLDLFLLGIITLVCSLLGLPWMNAATPQSPMHVRSLAVESETSAPGEKPKI 424 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhHhHHHhCCh-hhccCCCCcccHHHHHHHHHHHHHHHcCCCCcccCccCCHHHhCcccEEeccccCCCCCee
Confidence 777778754433333332 22333445667788999999999999997776664323332211 1
Q ss_pred ccCCc-hhHHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 009579 358 TRVGS-RRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCN 417 (531)
Q Consensus 358 Tgv~S-R~~~~~ag~~li~lg~~pk~~~li~~IP~~Vlgg~li~~fg~i~~~Gi~~l~~~~ 417 (531)
.+++. |.......+ | +|+..-+..++..||.||+.|+++++ |.-...|.|+.+|+.
T Consensus 425 ~~V~EqRvT~l~~~~-L--igls~~l~pvL~~IP~~VL~GvFlym-G~~sL~gnq~~~Ri~ 481 (510)
T PF00955_consen 425 VGVREQRVTGLLVHL-L--IGLSLFLLPVLKLIPMPVLYGVFLYM-GVTSLSGNQFFERIL 481 (510)
T ss_dssp --------------------------------------------------------TTTT-
T ss_pred CeEEEecccHHHHHH-H--HHHHHHHHHHHHHhhHHHHHHHHHhh-eeeeecCccHHHHHH
Confidence 22332 444444443 2 23333455689999999999999996 666677777766554
No 22
>KOG4085 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.81 E-value=2.3 Score=38.69 Aligned_cols=123 Identities=15% Similarity=0.027 Sum_probs=70.2
Q ss_pred cCCchhHHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHHHHHHHHHHh--------hhhhhhhc-cccCcccEEeehh
Q 009579 359 RVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAG--------GLSFLQFC-NLNSFRVKFILGF 429 (531)
Q Consensus 359 gv~SR~~~~~ag~~li~lg~~pk~~~li~~IP~~Vlgg~li~~fg~i~~~--------Gi~~l~~~-~~~d~rn~~ivg~ 429 (531)
+-.+|.+.+.++++.+++|++. .++.-|....++++-++-|++... -+..+.++ +..|+| ..--=.
T Consensus 29 r~l~rl~gilgaf~~~~fGvf~----~ITls~~c~vAgvlqm~agfivlllEAPfCCqFv~F~n~iAekves~-~lw~kA 103 (175)
T KOG4085|consen 29 RWLCRLSGILGAFSCAIFGVFN----CITLSPLCIVAGVLQMMAGFIVLLLEAPFCCQFVEFANTIAEKVESL-RLWQKA 103 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh----HHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4456888999999999988765 888888888999888776665432 11111121 222222 221222
Q ss_pred hHHhhhch-hhhhhhhhhhcCCCCccccccccccchhcccccchHHHHHHHHHHhhhcCCCCccchhhccccccccc
Q 009579 430 SIFIGLSV-PQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLHKKDGQVRKDRGRHWWDKF 505 (531)
Q Consensus 430 sl~~Gl~~-p~~~~~~~~~~~~~p~~~~~~~lp~~~~~~l~~gi~~g~l~ailLn~~~~~~~~~~~~~~~~~~~~~~ 505 (531)
.+-.++++ |-++. -.++++++||++.++=+--=+..+=.|.|.+.-...+.++|+++
T Consensus 104 ~~Y~aMavvPI~lc-------------------~~L~tllGsg~iFatGV~YG~mALGKKadr~~maaa~dpa~sqq 161 (175)
T KOG4085|consen 104 VFYCAMAVVPIVLC-------------------LTLTTLLGSGIIFATGVLYGLMALGKKADRISMAAAQDPAQSQQ 161 (175)
T ss_pred HHHHhhccccchhh-------------------hhHHHHhCcchhhhhHHHHHHHHhcccccHHHHHHhcCcccCcc
Confidence 34445554 33322 23678999998877644444444444433333334455667663
No 23
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=80.03 E-value=29 Score=37.27 Aligned_cols=140 Identities=11% Similarity=0.130 Sum_probs=81.8
Q ss_pred hhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceeEccccchHHHHHHHHHhcCCCCCCCCCchhhhhhHHHHHHH
Q 009579 60 VPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGS 139 (531)
Q Consensus 60 ~~a~gl~~~~~~~li~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~i~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~ga 139 (531)
.++.|-+.. +...+...|++|++-+.|| ..++..+. + ..+++... ++ |+| ...=.++
T Consensus 247 l~aaGy~~p-----~~~~~~~tGl~sll~ApfG-g~~~nlaa----i--taAic~G~--~a--------h~d-~~rR~~a 303 (395)
T TIGR00843 247 LKAAGYNAP-----AKPIIAAAGLAALFAAFAG-GISIGIAA----I--TAAICMGK--DA--------HED-KDKRWIA 303 (395)
T ss_pred HHHcCCCCC-----chHHHHHHHHHHHHHhccC-CchhhhhH----H--hHHHhcCc--cc--------ccC-cCccchH
Confidence 344555443 3677889999999999997 44432111 1 12222111 10 111 2234577
Q ss_pred HHHHHHHHHHHhhh-hhHHHHHhhcCcccHHHHHHHHHHHhhhhhccCc----c--hhhhhHHHHHHHHHHHHHhhhhhh
Q 009579 140 LIVASTLQIVLGFS-GLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGV----A--KCVEIGLPQLVIIVFISQYLPHVI 212 (531)
Q Consensus 140 vlvaGvl~illg~~-g~~~~l~~~~Pp~V~G~~i~lIGl~l~~~~~~~~----~--~~~~i~l~~l~~~i~~~~~~~~~~ 212 (531)
.+.+|++++++|++ +....+...+|+..+... -|+.|.+.-..++ . .+.+-++.++++. ..++
T Consensus 304 ~i~~Gv~yll~glfag~i~~l~~~~P~~li~~l---aGlAll~~~~~~l~~a~~~~~~r~~a~~tflvt------aSg~- 373 (395)
T TIGR00843 304 AAAAGIFYLLAGLFAGAITALFAALPKELIAAL---AGLALLGAIAGNIKIALHEDQERDAALIAFLAT------ASGL- 373 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH---HHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH------HhcC-
Confidence 89999999999998 777888999998776643 3444443322111 1 1223344444433 2232
Q ss_pred hccccchhhhHHHHHHHHHHHHHH
Q 009579 213 KRGKNIFDRFAVIFSVVIVWIYAH 236 (531)
Q Consensus 213 ~~~~~~lr~~aiLigivvG~i~a~ 236 (531)
.++.+.+-++|+++|.+..+
T Consensus 374 ----~~~gigaafWgl~~G~~~~~ 393 (395)
T TIGR00843 374 ----HFLGIGSAFWGLCAGGLAYF 393 (395)
T ss_pred ----CcccccHHHHHHHHHHHHHH
Confidence 24668899999999977543
No 24
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=76.53 E-value=35 Score=38.41 Aligned_cols=120 Identities=18% Similarity=0.172 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHhcCCCCCCcCCCcchhhhhhHHHhhhhcCCCCCcccccchhhh--hhhccCC---
Q 009579 287 AFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGL--LALTRVG--- 361 (531)
Q Consensus 287 il~~~~~~iv~~~esig~~~av~~~~~~~~~~~~~~~r~l~adGl~~ilaglfG~~~~tt~s~~n~g~--i~~Tgv~--- 361 (531)
++.-+.++++.+=|+++- +..++-+ ...|+.+.=++.++.++||+.+..... ...+. +...-++
T Consensus 25 l~AGltva~valP~ama~----a~~aGv~------p~~GLyas~i~~~v~alfGgs~~~i~G-Pt~a~~~v~a~~i~~~~ 93 (554)
T COG0659 25 LLAGLTVAAVALPLAMAF----AIAAGVP------PEAGLYASIVAGIIYALFGGSRGLISG-PTGAFAVVLAAVIASLV 93 (554)
T ss_pred HHHHHHHHHHHhHHHHHH----HHHcCCC------HHHHHHHHHHHHHHHHHHcCCccceec-cchhhHHHHHHHHHHHH
Confidence 455566777777776653 3344432 347999999999999999999876443 22221 1112222
Q ss_pred c------hhHHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 009579 362 S------RRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNL 418 (531)
Q Consensus 362 S------R~~~~~ag~~li~lg~~pk~~~li~~IP~~Vlgg~li~~fg~i~~~Gi~~l~~~~~ 418 (531)
. -.+...+|++.+++|++ |++.++..||.||+-|.+-=.--.|...-+..+...+.
T Consensus 94 ~~g~~~~~~~tllaGv~~i~~G~l-RLG~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~ 155 (554)
T COG0659 94 ETGLALAFLATLLAGVFQILLGLL-RLGRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLAS 155 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 1 12357789999999976 89999999999999987664434445555555544444
No 25
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=75.82 E-value=32 Score=38.65 Aligned_cols=116 Identities=16% Similarity=0.171 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHhcCCCCCCcCCCcchhhhhhHHHhhhhcCCCCCcccccchhh-hh-----hhccC
Q 009579 287 AFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAG-LL-----ALTRV 360 (531)
Q Consensus 287 il~~~~~~iv~~~esig~~~av~~~~~~~~~~~~~~~r~l~adGl~~ilaglfG~~~~tt~s~~n~g-~i-----~~Tgv 360 (531)
++.-+.++++.+-++++- +..++-+ ..-|+.+.-+..++.++||+.+.......+.- .+ ..-+.
T Consensus 18 i~aGltv~~~~iP~~~ay----A~laglp------p~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~~v~~~~~ 87 (563)
T TIGR00815 18 LMAGLTVGILLIPQAMAY----AILAGLS------PIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGSVIARVGL 87 (563)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHcCCC------chhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 445566777777777653 4444532 23479999999999999999988776532221 11 11111
Q ss_pred Cch----------hHHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhhh
Q 009579 361 GSR----------RVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFL 413 (531)
Q Consensus 361 ~SR----------~~~~~ag~~li~lg~~pk~~~li~~IP~~Vlgg~li~~fg~i~~~Gi~~l 413 (531)
... .....+|++++++|++ +++.+...||.||+.|.+.-+.-.+..+-++.+
T Consensus 88 ~~~~~~~~~~~a~~l~~l~Gi~~~~~g~l-rlG~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~ 149 (563)
T TIGR00815 88 QYLFDCDAIRLAFTLTLLAGIFQVILGLL-RLGFLIEFLSHAVISGFMTGAAITIGLSQLKGL 149 (563)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 4557889999999976 799999999999999976655444554444433
No 26
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=67.93 E-value=1.2e+02 Score=29.36 Aligned_cols=30 Identities=10% Similarity=0.113 Sum_probs=22.3
Q ss_pred HHHHHhhcCcc-------cHHHHHHHHHHHhhhhhcc
Q 009579 156 WRNVTRFLSPL-------SVVPLISLVGFGLYEFGFP 185 (531)
Q Consensus 156 ~~~l~~~~Pp~-------V~G~~i~lIGl~l~~~~~~ 185 (531)
-+++.|.+.+. ++|.+++.||++++-.|+.
T Consensus 164 a~~i~~~lG~~g~~vi~Ri~Glil~aiavq~i~~Gl~ 200 (203)
T PF01914_consen 164 ADKIMRRLGKTGLQVITRIMGLILAAIAVQMILSGLR 200 (203)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888763 5788888888887766654
No 27
>PRK11660 putative transporter; Provisional
Probab=63.88 E-value=71 Score=35.98 Aligned_cols=114 Identities=13% Similarity=0.124 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHhcCCCCCCcCCCcchhhhhhHHHhhhhcCCCCCcccccchhhhhhh------ccC
Q 009579 287 AFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLAL------TRV 360 (531)
Q Consensus 287 il~~~~~~iv~~~esig~~~av~~~~~~~~~~~~~~~r~l~adGl~~ilaglfG~~~~tt~s~~n~g~i~~------Tgv 360 (531)
++.-+.++++.+-++++ .+..++.++ .-|+.+.-+++++.++||+.+......++.-.... .+.
T Consensus 33 ~iAGltv~~~~iPq~ma----yA~lag~pp------~~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~~~~~~~~ 102 (568)
T PRK11660 33 LIAGITVGIIAIPLAMA----LAIASGVPP------QYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQQFGL 102 (568)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHcCCCh------HHHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHHHHHHhhH
Confidence 45556777777777775 345555422 22899999999999999999987765332211111 111
Q ss_pred C-chhHHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhh
Q 009579 361 G-SRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLS 411 (531)
Q Consensus 361 ~-SR~~~~~ag~~li~lg~~pk~~~li~~IP~~Vlgg~li~~fg~i~~~Gi~ 411 (531)
. .-.....+|++.+++|++ +++.+...||.||+.|.+.-+--.+..+.++
T Consensus 103 ~~~~~~~~l~Gii~~l~gll-rlG~l~~fip~pVi~Gf~~g~al~I~~~Ql~ 153 (568)
T PRK11660 103 AGLLVATLMSGIILILMGLA-RLGRLIEYIPLSVTLGFTSGIGIVIATLQIK 153 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hhhHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 1 012356788999999977 5899999999999999665432333343333
No 28
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=59.04 E-value=53 Score=35.04 Aligned_cols=115 Identities=19% Similarity=0.265 Sum_probs=71.0
Q ss_pred cccHHHHHHHHHHHHHHHHHhHHHHHHHHhHhcCCCCCCcCCCcch----hhhhhHHHhhhhcCCCCCcccccchhhhhh
Q 009579 281 SFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGV----GWQGVGILLSGLFGTVNGTSVSVENAGLLA 356 (531)
Q Consensus 281 ~f~~~~il~~~~~~iv~~~esig~~~av~~~~~~~~~~~~~~~r~l----~adGl~~ilaglfG~~~~tt~s~~n~g~i~ 356 (531)
+|+++.+..-+...++...-+..-+....+..+. ++++....+ ++.|+.++.-++.==.|..+.- +.-|..-
T Consensus 2 d~~~s~~~aG~va~lvg~tg~~aiv~qaa~a~g~---s~~q~~SWl~al~~~~Gl~~i~lSl~yR~Pi~~AW-StPGaAl 77 (378)
T PF03594_consen 2 DFSLSAVSAGFVAVLVGYTGPVAIVLQAAQAAGA---SPAQIASWLFALYLGMGLTSILLSLRYRMPIVTAW-STPGAAL 77 (378)
T ss_pred CCcHHHHHHHHHHHHhhccchHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhc-chHHHHH
Confidence 4556666666666677776666666666665553 223344433 4455566655555555655544 2333222
Q ss_pred hccCCch--h-----HHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHH
Q 009579 357 LTRVGSR--R-----VVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYC 399 (531)
Q Consensus 357 ~Tgv~SR--~-----~~~~ag~~li~lg~~pk~~~li~~IP~~Vlgg~li 399 (531)
......+ + +++.++++++++|+.+.+..++..||.++..+++-
T Consensus 78 L~~~~~~~~~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLA 127 (378)
T PF03594_consen 78 LATSLPGYSFAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLA 127 (378)
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 1111111 1 36788999999999999999999999999888654
No 29
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=56.93 E-value=3e+02 Score=30.17 Aligned_cols=65 Identities=20% Similarity=0.176 Sum_probs=32.5
Q ss_pred HHHHHhHHHHHHHHhHhcCCCCCCcCCCcchhhhhhHHHhhhhcCCCCCcc---cccchhhhhhhccCCchh
Q 009579 296 VALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTS---VSVENAGLLALTRVGSRR 364 (531)
Q Consensus 296 v~~~esig~~~av~~~~~~~~~~~~~~~r~l~adGl~~ilaglfG~~~~tt---~s~~n~g~i~~Tgv~SR~ 364 (531)
...++.+|...+.... +.+ +..+...++-.=|+-+++.-.+|+..+.+ |+ ...+....+.-.+|+
T Consensus 240 ~~~~~ilGa~~a~a~g--~~~-~~~~~~~~~G~~g~~~~lil~l~~~ttN~~nlYs-a~ls~~~i~~~l~k~ 307 (442)
T COG1457 240 TSFMMILGAALAAAAG--NAD-SIADVMLGLGGFGLPAILILVLGTVTTNANNLYS-AGLSFANIIPKLSKV 307 (442)
T ss_pred HHHHHHHHHHHHHhcC--CCc-hHHHHHHhcccHHHHHHHHHHHHHHhcCcHHHHH-HHHHHHHhhhhhhhH
Confidence 3445566655554443 221 11122222222556688888888775544 44 555665555534443
No 30
>PF13142 DUF3960: Domain of unknown function (DUF3960)
Probab=55.84 E-value=5.9 Score=32.29 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=31.3
Q ss_pred HHhhhcCCCCccchhhcccccccccccCCCCCC-------CCcccCCCcc
Q 009579 481 FLDNTLHKKDGQVRKDRGRHWWDKFWSFKGDTR-------SEEFYSLPFN 523 (531)
Q Consensus 481 lLn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~y~~p~~ 523 (531)
+..+++|-+++.+.|||....|++-+-++++.- +++.|.+|-.
T Consensus 24 l~~llvp~~pkg~~KerTIl~w~~KefyKeenli~~i~Ygm~~~~~lp~y 73 (87)
T PF13142_consen 24 LFSLLVPCEPKGEDKERTILMWKEKEFYKEENLIPFILYGMKKGYQLPQY 73 (87)
T ss_pred HHHHhcCCCCCCCCceeEEeeechhhHHhhhccceeEEeeccccccCccc
Confidence 556788877777789999999987544554433 6777888854
No 31
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=52.94 E-value=47 Score=33.73 Aligned_cols=40 Identities=13% Similarity=0.119 Sum_probs=33.6
Q ss_pred hhHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhhhhhcccc
Q 009579 379 LGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLN 419 (531)
Q Consensus 379 ~pk~~~li~~IP~~Vlgg~li~~fg~i~~~Gi~~l~~~~~~ 419 (531)
.+.+.+++..||.-++.|..+. -+++=+.|+.++.|.-++
T Consensus 163 ~~~v~~il~~iP~~v~~Gl~va-ggmLPAvGfAmLl~~m~~ 202 (265)
T TIGR00822 163 QSAVQAMLKAIPEVVTHGLQIA-GGIIVVVGYAMVLRMMFK 202 (265)
T ss_pred HHHHHHHHHHCHHHHHHHHHHH-HhhHHHHHHHHHHHHHhh
Confidence 4568899999999999998876 488889999999887664
No 32
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=45.38 E-value=4.5e+02 Score=29.34 Aligned_cols=129 Identities=16% Similarity=0.129 Sum_probs=68.5
Q ss_pred CCCCChHHHHHHHHHHHHHhhceeehhHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCccee--EccccchH
Q 009579 29 TSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAV--MGGSYTFV 106 (531)
Q Consensus 29 ~~~pp~~~~i~~GlQh~lam~~~~i~vP~il~~a~gl~~~~~~~li~atll~sGi~Tllq~~~G~rlPiv--~Gpsfa~i 106 (531)
..+|+.+..+..+.-..+...+.....|++..+..|.++.....+..+.-+.+-+++++...+..|++.- ..-+....
T Consensus 215 ~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~ 294 (524)
T PF05977_consen 215 RSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLF 294 (524)
T ss_pred hcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHH
Confidence 3455566555555544443333334468887777898887776666666566666666666554443321 01111111
Q ss_pred HHHHHHHHhcCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCcccHHHHH
Q 009579 107 PSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLI 172 (531)
Q Consensus 107 ~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~gavlvaGvl~illg~~g~~~~l~~~~Pp~V~G~~i 172 (531)
+..... .+. ......++.+.++.|......-. .....+++..|+.+.|=+.
T Consensus 295 a~~~~~---lal-----------~~~~~~~~~~l~l~G~~~~~~~~-~~~t~~Q~~~P~~~~GRv~ 345 (524)
T PF05977_consen 295 ALALLL---LAL-----------SPSFWLALIALFLAGAAWIIANS-SLNTLVQLSVPDWVRGRVF 345 (524)
T ss_pred HHHHHH---Hhc-----------chHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHhHHH
Confidence 111111 111 01334556667777876655432 2335678888887766543
No 33
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=44.99 E-value=2.3e+02 Score=30.32 Aligned_cols=76 Identities=14% Similarity=0.202 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcceeEccccchHHHHHHHHHhcCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 009579 73 VIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGF 152 (531)
Q Consensus 73 li~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~i~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~gavlvaGvl~illg~ 152 (531)
-++..+.+.|+++++-+++| ..|.. ++ ..- ..+....+.. . --+.+++|++.+++++
T Consensus 254 ~~~~~l~~~Gi~~i~aglfG-~~p~t---~~--~~~-~~~~~~tg~~---------------s-r~~~~~~~~~lil~~l 310 (406)
T TIGR03173 254 DLAGGLRADGLGSALGGLFN-TFPYT---SF--SQN-VGLVQLTGVK---------------S-RYVVAAAGVILVLLGL 310 (406)
T ss_pred hccchHHhccHHHHHHHHhC-CCCCc---ch--hhh-HHHHHHhCCC---------------c-hHhHHHHHHHHHHHHH
Confidence 35788899999999999997 57742 22 111 1111111210 0 1123778888888888
Q ss_pred hhhHHHHHhhcCcccHHHH
Q 009579 153 SGLWRNVTRFLSPLSVVPL 171 (531)
Q Consensus 153 ~g~~~~l~~~~Pp~V~G~~ 171 (531)
++....+...+|..|.|.+
T Consensus 311 ~~~~~~l~~~iP~~vlgg~ 329 (406)
T TIGR03173 311 FPKLAALVASIPQPVLGGA 329 (406)
T ss_pred HHHHHHHHHhCCHHHHHHH
Confidence 7767999999998887764
No 34
>PF13792 Sulfate_tra_GLY: Sulfate transporter N-terminal domain with GLY motif
Probab=43.41 E-value=29 Score=28.87 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=46.5
Q ss_pred ChHHHHHHHHHHHHHhhceeehhHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceeEccccch
Q 009579 33 PWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTF 105 (531)
Q Consensus 33 p~~~~i~~GlQh~lam~~~~i~vP~il~~a~gl~~~~~~~li~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~ 105 (531)
.+++.+++|+.-.+..++..+.... .+|+++ +..+..+.++.++-++||.+.-++.||+.+.
T Consensus 15 ~~~~D~~aGltva~~~iPq~~a~A~----lAg~pp-------~~GLy~a~~~~liyalfG~s~~~~~Gp~a~~ 76 (84)
T PF13792_consen 15 NLRGDLLAGLTVALVAIPQGMAYAL----LAGVPP-------IYGLYAAIIPPLIYALFGSSRHMIVGPTAAM 76 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HcCCCC-------CeeeHHHHHHHHHHhhccCCCccccChHHHH
Confidence 4688999999987765544433332 278888 5778888999999999998888888996443
No 35
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=43.19 E-value=71 Score=34.81 Aligned_cols=76 Identities=11% Similarity=0.124 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcceeEccccchHHHHHHHHHhcCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 009579 73 VIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGF 152 (531)
Q Consensus 73 li~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~i~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~gavlvaGvl~illg~ 152 (531)
-+..++.+-|++|++-+++| ..|. .+|.-= ..+....+..+ . -.+..+|++.+++|+
T Consensus 276 ~l~rgi~~dGi~s~laglfg-~~p~---tt~sqN---vGvi~~TgV~S-----------R-----~v~~~aa~ilillgl 332 (433)
T PRK11412 276 RYRRSFVATGFMTLITVPLA-VIPF---SPFVSS---IGLLTQTGDYR-----------R-----RSFIYGSVMCLLVAL 332 (433)
T ss_pred ccccchhhccHHHHHHHhcC-CCCC---Cchhhh---hhhhhhcCCch-----------h-----HHHHHHHHHHHHHHH
Confidence 46789999999999999986 5554 222111 11111112110 1 125677888999999
Q ss_pred hhhHHHHHhhcCcccHHHH
Q 009579 153 SGLWRNVTRFLSPLSVVPL 171 (531)
Q Consensus 153 ~g~~~~l~~~~Pp~V~G~~ 171 (531)
++-+..+...+|..|.|.+
T Consensus 333 ~PK~~alia~IP~pVlGg~ 351 (433)
T PRK11412 333 IPALTRLFCSIPLPVSSAV 351 (433)
T ss_pred HHHHHHHHHhCCHHHHHHH
Confidence 8888999999998777765
No 36
>COG3817 Predicted membrane protein [Function unknown]
Probab=38.14 E-value=3.6e+02 Score=27.37 Aligned_cols=96 Identities=15% Similarity=0.117 Sum_probs=45.7
Q ss_pred cccHHHHHHHHHHHHHHHHHhHHHHHHHHhHhcCCCCCCc-CCCcchhhhhhH---HHhhhhcCCCCCcccccchhhhhh
Q 009579 281 SFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPS-VLSRGVGWQGVG---ILLSGLFGTVNGTSVSVENAGLLA 356 (531)
Q Consensus 281 ~f~~~~il~~~~~~iv~~~esig~~~av~~~~~~~~~~~~-~~~r~l~adGl~---~ilaglfG~~~~tt~s~~n~g~i~ 356 (531)
+.+|..+++=+..++-..+.+.|--.++++...+-.+.+. -+.-..-+-|.+ -+.+--|.++|..|.. +|+-.
T Consensus 163 ~v~wa~iLPQ~LaaLG~vFa~aGvG~~ia~L~~~~i~~DsrfiaV~~Y~vgMalfTmiMGNaFAAFpViTag---IgvPi 239 (313)
T COG3817 163 QVSWAAILPQMLAALGAVFASAGVGDVIAHLISEIIPADSRFIAVAAYCVGMALFTMIMGNAFAAFPVITAG---IGVPI 239 (313)
T ss_pred HhhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHcccchhceeeecc---cccce
Confidence 4567777776666666666666665666665533211111 111122222222 2345566677765554 44433
Q ss_pred hccCCchhHHHHHHHHHHHHHHhh
Q 009579 357 LTRVGSRRVVQISAGFMIFFSVLG 380 (531)
Q Consensus 357 ~Tgv~SR~~~~~ag~~li~lg~~p 380 (531)
.-+...--..+.+++ -+..|+|.
T Consensus 240 lv~q~ganPaV~~Ai-gM~sGfCG 262 (313)
T COG3817 240 LVGQLGANPAVAGAI-GMLSGFCG 262 (313)
T ss_pred eeeccCCChHHHHHH-HHHhhhhh
Confidence 333333233333333 34567776
No 37
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=33.97 E-value=2e+02 Score=30.96 Aligned_cols=76 Identities=24% Similarity=0.344 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcceeEccccchHHHHHHHHHhcCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 009579 74 IQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFS 153 (531)
Q Consensus 74 i~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~i~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~gavlvaGvl~illg~~ 153 (531)
++..+++-|++|++-+++| ..|.. + |.- -..+....+. ..-. +...+|++.++++++
T Consensus 271 ~~r~l~adGl~~i~aglfG-~~p~t---~--~se-n~g~~~~T~~---------------~sr~-~~~~~a~~~i~~~l~ 327 (415)
T TIGR00801 271 LHRGVLADGLATLLAGLFG-GFPNT---T--FAQ-NIGVIALTRV---------------ASRW-VIVGAAVILIALGFF 327 (415)
T ss_pred ccchHHHhhHHHHHHHhcC-CCCCc---c--hhh-hheeeeecCC---------------CchH-HHHHHHHHHHHHHHH
Confidence 5688999999999999997 46652 2 111 0111111111 1111 567888889999988
Q ss_pred hhHHHHHhhcCcccHHHHH
Q 009579 154 GLWRNVTRFLSPLSVVPLI 172 (531)
Q Consensus 154 g~~~~l~~~~Pp~V~G~~i 172 (531)
+-+..+...+|..|.|...
T Consensus 328 pk~~~l~~~iP~~vlgg~~ 346 (415)
T TIGR00801 328 PKIAALITSIPSPVLGGAS 346 (415)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 6679999999987777653
No 38
>COG4129 Predicted membrane protein [Function unknown]
Probab=28.68 E-value=6.8e+02 Score=26.30 Aligned_cols=64 Identities=17% Similarity=0.280 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCcceeEccccchHHHHHHHHHhcCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 009579 75 QTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGF 152 (531)
Q Consensus 75 ~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~i~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~gavlvaGvl~illg~ 152 (531)
-.|-++.+++.++-.++|+..| .||.+.+++++.. +-..+...+++-++|.++-.++-.+.+.+
T Consensus 14 lKt~ia~~La~~ia~~l~~~~~-----~~A~i~AV~~l~~---------t~~~s~~~~~~r~~g~~iG~~~a~l~~~l 77 (332)
T COG4129 14 LKTGLAAGLALLIAHLLGLPQP-----AFAGISAVLCLSP---------TIKRSLKRALQRLLGNALGAILAVLFFLL 77 (332)
T ss_pred HHHHHHHHHHHHHHHHhCCCch-----HHHHHHHhhcccC---------cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555778888888667766554 4555544443321 11234456677777776655554444443
No 39
>PRK10720 uracil transporter; Provisional
Probab=27.03 E-value=3.2e+02 Score=29.63 Aligned_cols=76 Identities=17% Similarity=0.280 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcceeEccccchHHHHHHHHHhcCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 009579 74 IQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFS 153 (531)
Q Consensus 74 i~atll~sGi~Tllq~~~G~rlPiv~Gpsfa~i~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~gavlvaGvl~illg~~ 153 (531)
++..+++-|++|++-+++| ..|.. + |.-- ..+.+..+.. ---....++++.++++++
T Consensus 262 ~~r~l~adGlatii~glfG-~~p~t---t--y~en-~g~ia~T~v~----------------sr~v~~~a~~~li~lg~~ 318 (428)
T PRK10720 262 LHRSMFANGLSTVISGFFG-STPNT---T--YGEN-IGVMAITRVY----------------STWVIGGAAIIAILLSCV 318 (428)
T ss_pred ccchHhhhhHHHHHHHhcC-CCCcc---c--cccc-cceeeecccc----------------hhHHHHHHHHHHHHHHHH
Confidence 4788899999999999887 45642 1 1100 0000001110 001134588889999998
Q ss_pred hhHHHHHhhcCcccHHHHH
Q 009579 154 GLWRNVTRFLSPLSVVPLI 172 (531)
Q Consensus 154 g~~~~l~~~~Pp~V~G~~i 172 (531)
+-+..+...+|..|.|.+.
T Consensus 319 pk~~a~ia~iP~pVlgg~~ 337 (428)
T PRK10720 319 GKLAAAIQAIPLPVMGGVS 337 (428)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 7779999999987777653
No 40
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=24.16 E-value=2.3e+02 Score=27.61 Aligned_cols=50 Identities=20% Similarity=0.215 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHH-HHHHhhhhhHHHHHhhcCc-------ccHHHHHHHHHHHhhhhhcc
Q 009579 133 MRAIQGSLIVASTL-QIVLGFSGLWRNVTRFLSP-------LSVVPLISLVGFGLYEFGFP 185 (531)
Q Consensus 133 ~~~~~gavlvaGvl-~illg~~g~~~~l~~~~Pp-------~V~G~~i~lIGl~l~~~~~~ 185 (531)
.-.+..+++++.++ ++++- .-+++.|++-. -++|..++.+|++.+-.|++
T Consensus 140 ~~~~~~~i~~~~~~~~~~l~---~s~~i~r~lG~~G~~~~~RimGllL~al~vq~i~~Gl~ 197 (203)
T COG2095 140 KLAVVLAILLASLLTYLILL---SSSRIMRLLGKTGLNALTRIMGLLLAALGVQMILDGLR 197 (203)
T ss_pred cHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555544 34433 34677777765 35777888888877766654
No 41
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=23.65 E-value=3.2e+02 Score=27.80 Aligned_cols=40 Identities=15% Similarity=0.122 Sum_probs=32.1
Q ss_pred hhHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhhhhhcccc
Q 009579 379 LGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLN 419 (531)
Q Consensus 379 ~pk~~~li~~IP~~Vlgg~li~~fg~i~~~Gi~~l~~~~~~ 419 (531)
...+..++..||.-+..|..+. -+++-..|+.++-|.-++
T Consensus 163 ~~~V~~~l~aiP~~l~~GL~va-GgmlpavGfAmll~~M~~ 202 (265)
T COG3715 163 SSAVQSLLDAIPEWLTNGLAVA-GGMLPAVGFAMLLNMMAK 202 (265)
T ss_pred HHHHHHHHHhchHHHhhhhhHh-cchhHHHHHHHHHHHHHh
Confidence 4567789999999999995554 588888999988877665
No 42
>PRK11663 regulatory protein UhpC; Provisional
Probab=22.82 E-value=7.6e+02 Score=26.07 Aligned_cols=37 Identities=11% Similarity=0.298 Sum_probs=27.8
Q ss_pred ehhHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 009579 53 VLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (531)
Q Consensus 53 i~vP~il~~a~gl~~~~~~~li~atll~sGi~Tllq~~ 90 (531)
...|.+..+ .|+++.+...+.+...+..+++.++-++
T Consensus 44 ~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~ 80 (434)
T PRK11663 44 AAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVSGI 80 (434)
T ss_pred HhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 345666554 8999988888888877778888777765
No 43
>PRK10739 putative antibiotic transporter; Provisional
Probab=22.33 E-value=2.8e+02 Score=26.82 Aligned_cols=30 Identities=10% Similarity=0.095 Sum_probs=21.8
Q ss_pred HHHHHhhcCcc-------cHHHHHHHHHHHhhhhhcc
Q 009579 156 WRNVTRFLSPL-------SVVPLISLVGFGLYEFGFP 185 (531)
Q Consensus 156 ~~~l~~~~Pp~-------V~G~~i~lIGl~l~~~~~~ 185 (531)
-+++.|++.+. ++|.+++.|+++.+-.|++
T Consensus 156 s~~i~~~LG~~g~~vi~RimGllLaaiavq~i~~Gi~ 192 (197)
T PRK10739 156 SSLFLRLLGEKGVNALERLMGLILVMLSTQMFLDGIR 192 (197)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888763 5777888888887766654
No 44
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=21.84 E-value=1.6e+02 Score=31.31 Aligned_cols=52 Identities=19% Similarity=0.085 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 009579 366 VQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCN 417 (531)
Q Consensus 366 ~~~ag~~li~lg~~pk~~~li~~IP~~Vlgg~li~~fg~i~~~Gi~~l~~~~ 417 (531)
..++|++.+++++......+...+|..|.|++.+.+--.+...++++....+
T Consensus 96 ~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~ 147 (389)
T PF00860_consen 96 VLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIW 147 (389)
T ss_dssp HHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS-
T ss_pred HHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhcccccc
Confidence 4678888899999887778999999999999888766666777888776544
No 45
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=21.51 E-value=1.5e+03 Score=27.36 Aligned_cols=188 Identities=13% Similarity=0.062 Sum_probs=108.6
Q ss_pred cccHHHHHHHHHHHHHHHHHhHHHHHHHHhHhcCCCCCCcCCCcchhhhhhHHHhhhhcCCCCCcccccchhhhhhh---
Q 009579 281 SFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLAL--- 357 (531)
Q Consensus 281 ~f~~~~il~~~~~~iv~~~esig~~~av~~~~~~~~~~~~~~~r~l~adGl~~ilaglfG~~~~tt~s~~n~g~i~~--- 357 (531)
.|+...+.+.+.+++.++.-.+.=-.-.++.++. .-..+..+++++++.++=++||+=|.+-.. ..|-+.+
T Consensus 366 a~~~q~laa~ifiyFA~L~PaIaFG~ll~~~T~g----~~gv~E~Llstai~Giifslf~GQPL~IlG--~TGPilvF~~ 439 (900)
T TIGR00834 366 ALNPQCLAAVIFIYFAALSPAITFGGLLGEKTRN----MMGVSELLISTAVQGVLFALLAAQPLLVVG--FSGPLLVFEE 439 (900)
T ss_pred hhcchhHHHHHHHHHHHhhHHhhHHHHHHHhhCC----cchHHHHHHHHHHHHHHHhhhcCCceEEec--CcccHHHHHH
Confidence 3566777777888888887766433334444432 346788999999999999999998765433 2332211
Q ss_pred -----ccCC-------chhHHHHHHHHHHHHHHhh--HHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhhhhhc----cc-
Q 009579 358 -----TRVG-------SRRVVQISAGFMIFFSVLG--KFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFC----NL- 418 (531)
Q Consensus 358 -----Tgv~-------SR~~~~~ag~~li~lg~~p--k~~~li~~IP~~Vlgg~li~~fg~i~~~Gi~~l~~~----~~- 418 (531)
.+-. --|+.++.++++++++.+- .+...++--..-+.+...-+.| ..-+++.+.+. +.
T Consensus 440 ~ly~~c~~~~~~yl~~~~WigiW~~~~~~lla~~~~s~lvryiTRFTeEiFa~lIs~IF---I~eai~~L~~~f~~~~~~ 516 (900)
T TIGR00834 440 AFFSFCESNGLEYLVGRVWIGLWLVLLVLLLVATEGSFLVRYISRFTQEIFSFLISLIF---IYETFSKLIKIFQEHPLQ 516 (900)
T ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCcc
Confidence 1100 1356777888887777664 3444555566666655333332 23444444321 10
Q ss_pred ---c-----------C------------------------cccEEeehhhHHhhhch-hhhhhhhhhhcCCCCccccccc
Q 009579 419 ---N-----------S------------------------FRVKFILGFSIFIGLSV-PQYFNEYTAINGFGPVHTSGRW 459 (531)
Q Consensus 419 ---~-----------d------------------------~rn~~ivg~sl~~Gl~~-p~~~~~~~~~~~~~p~~~~~~~ 459 (531)
+ + ..|....++-+.+|.-. ..++.++ .+ ...
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~llsliL~lgTf~~a~~L~~f----k~------s~y 586 (900)
T TIGR00834 517 VFYNTLFCVPPKPQGPSVSALLEKDCSKLGGTLGGNNCRFQPNTALLSLVLMLGTFFLAMFLRKF----KN------SRY 586 (900)
T ss_pred cccccccccccccccccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHh----CC------CCc
Confidence 0 0 02233334444444432 3333332 11 124
Q ss_pred cccchhccccc-chHHHHHHHHHHhhhcC
Q 009579 460 FNDMVNVPFSS-EPFVAGCVAFFLDNTLH 487 (531)
Q Consensus 460 lp~~~~~~l~~-gi~~g~l~ailLn~~~~ 487 (531)
+|.+++.++++ ++.++.++-+.++..++
T Consensus 587 f~~~vR~~isDfgv~iaI~~~t~v~~~~~ 615 (900)
T TIGR00834 587 FPGKARRLIGDFGVPISILIMVLVDIFIG 615 (900)
T ss_pred CCchhhhhhhhhhHHHHHHHHHHHHHHhc
Confidence 78889988876 88888888888888765
No 46
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=20.93 E-value=1.1e+03 Score=25.55 Aligned_cols=157 Identities=13% Similarity=0.132 Sum_probs=85.8
Q ss_pred cccHHHHHHHH--HHHHHHHHHhHHHHHHHHhHhcCCC-CCCcCCCcchhhhhh--HHHhhhhcCCCCCcc-----cccc
Q 009579 281 SFDAGEAFAMM--MASFVALVESTGAFFAVARYASATP-MPPSVLSRGVGWQGV--GILLSGLFGTVNGTS-----VSVE 350 (531)
Q Consensus 281 ~f~~~~il~~~--~~~iv~~~esig~~~av~~~~~~~~-~~~~~~~r~l~adGl--~~ilaglfG~~~~tt-----~s~~ 350 (531)
.|+++-+++.+ .+..+.++.++....|..- +-.+ ---++.+-+++..++ --++|+++.-..+.+ .. .
T Consensus 56 rfE~ED~vPAlAgtIGkivMvsAv~aafA~~l--gL~~~Fv~envR~EllI~a~lFvil~Sgfl~P~anLAGthgPmI-p 132 (492)
T PF11840_consen 56 RFEWEDLVPALAGTIGKIVMVSAVAAAFAAPL--GLSPEFVIENVRYELLIAALLFVILFSGFLNPRANLAGTHGPMI-P 132 (492)
T ss_pred ccchHHhhHHHHhhhhHHHHHHHHHHHHhhcc--CCChhHhhhhhhhhhhHHHHHHHHHHHhccCccccccCCCCCcc-h
Confidence 56666666654 3444555444433222111 1111 122567778888888 677777774322211 22 3
Q ss_pred hhhhhhhccCCchhHHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhhhhh-ccccCcccEEeehh
Q 009579 351 NAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQF-CNLNSFRVKFILGF 429 (531)
Q Consensus 351 n~g~i~~Tgv~SR~~~~~ag~~li~lg~~pk~~~li~~IP~~Vlgg~li~~fg~i~~~Gi~~l~~-~~~~d~rn~~ivg~ 429 (531)
=++.++..|..-..-.+.-|++=++++++---+.+...--.-|-||.++++ |.+...+ .++| ..|.+.-++--+++
T Consensus 133 LIp~ivaaGgHPLalgilvg~fGlil~~~kggS~L~~LTs~gv~ggLllyl-G~~G~~~--qi~kl~~wa~~~~~~~i~f 209 (492)
T PF11840_consen 133 LIPLIVAAGGHPLALGILVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYL-GFVGLIG--QIKKLFAWANGFDMGYIAF 209 (492)
T ss_pred hhHHHHHcCCCcHHHHHHHHHHHHHHHHhcchhHHHhhhcCccccceeeee-hhhhHHH--HHHHHHHHHhccCccHHHH
Confidence 356777788775555566666666677665455566666677778888774 6555433 3333 35655455555555
Q ss_pred hHHhhhch-hhhhhh
Q 009579 430 SIFIGLSV-PQYFNE 443 (531)
Q Consensus 430 sl~~Gl~~-p~~~~~ 443 (531)
.+++...+ =.++++
T Consensus 210 vvi~~tiv~Ya~L~k 224 (492)
T PF11840_consen 210 VVIIVTIVLYAYLAK 224 (492)
T ss_pred HHHHHHHHHHHHHHH
Confidence 55544432 334444
Done!