Query 009581
Match_columns 531
No_of_seqs 463 out of 1815
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 14:51:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009581.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009581hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11784 tRNA 2-selenouridine 99.9 4.3E-23 9.4E-28 215.5 13.6 182 273-503 4-208 (345)
2 TIGR03167 tRNA_sel_U_synt tRNA 99.9 3.9E-22 8.5E-27 205.7 13.0 177 286-501 2-193 (311)
3 cd01533 4RHOD_Repeat_2 Member 99.8 4.6E-20 9.9E-25 160.9 10.1 99 270-396 10-109 (109)
4 cd01518 RHOD_YceA Member of th 99.8 1.6E-19 3.5E-24 155.2 9.0 98 271-393 3-100 (101)
5 cd01527 RHOD_YgaP Member of th 99.8 6.2E-19 1.4E-23 150.6 9.9 98 270-399 2-99 (99)
6 PRK11493 sseA 3-mercaptopyruva 99.8 6.8E-19 1.5E-23 178.5 11.3 214 161-402 7-280 (281)
7 PLN02723 3-mercaptopyruvate su 99.8 1.1E-18 2.4E-23 180.5 13.1 216 160-402 23-318 (320)
8 PRK00162 glpE thiosulfate sulf 99.8 6E-19 1.3E-23 153.6 9.3 101 270-401 5-105 (108)
9 cd01534 4RHOD_Repeat_3 Member 99.8 6.4E-19 1.4E-23 150.0 8.9 93 272-393 1-94 (95)
10 PLN02160 thiosulfate sulfurtra 99.8 8.6E-19 1.9E-23 160.5 9.8 115 269-403 14-130 (136)
11 cd01523 RHOD_Lact_B Member of 99.8 9.5E-19 2.1E-23 149.9 9.4 99 272-393 1-99 (100)
12 cd01448 TST_Repeat_1 Thiosulfa 99.8 1.3E-18 2.9E-23 153.9 9.7 110 272-396 2-122 (122)
13 COG2897 SseA Rhodanese-related 99.8 2.6E-18 5.7E-23 175.1 12.4 216 160-402 12-283 (285)
14 cd01519 RHOD_HSP67B2 Member of 99.8 9.9E-19 2.2E-23 150.4 7.6 104 273-393 2-105 (106)
15 PRK09629 bifunctional thiosulf 99.8 4.2E-18 9E-23 189.8 12.8 216 160-402 10-272 (610)
16 cd01449 TST_Repeat_2 Thiosulfa 99.7 2.1E-18 4.6E-23 151.3 7.9 106 272-393 1-117 (118)
17 cd01521 RHOD_PspE2 Member of t 99.7 6.2E-18 1.3E-22 148.0 10.1 101 269-399 7-110 (110)
18 cd01526 RHOD_ThiF Member of th 99.7 5.4E-18 1.2E-22 151.2 9.3 110 269-398 7-117 (122)
19 cd01444 GlpE_ST GlpE sulfurtra 99.7 5.8E-18 1.3E-22 142.9 8.7 93 271-393 1-95 (96)
20 cd01528 RHOD_2 Member of the R 99.7 9.8E-18 2.1E-22 144.1 9.8 97 271-394 1-98 (101)
21 cd01520 RHOD_YbbB Member of th 99.7 1.3E-17 2.8E-22 150.3 10.6 106 272-394 1-126 (128)
22 TIGR03865 PQQ_CXXCW PQQ-depend 99.7 1.1E-17 2.4E-22 157.6 10.6 110 270-399 36-162 (162)
23 PRK11493 sseA 3-mercaptopyruva 99.7 1.4E-17 3E-22 168.9 11.7 121 271-406 6-140 (281)
24 cd01525 RHOD_Kc Member of the 99.7 1.2E-17 2.5E-22 143.8 9.4 100 272-393 1-104 (105)
25 smart00450 RHOD Rhodanese Homo 99.7 1.4E-17 3E-22 138.4 8.2 99 284-398 2-100 (100)
26 cd01447 Polysulfide_ST Polysul 99.7 1.7E-17 3.7E-22 141.6 8.5 102 272-396 1-103 (103)
27 PF00581 Rhodanese: Rhodanese- 99.7 5.8E-17 1.3E-21 139.0 11.4 108 273-395 1-113 (113)
28 cd01524 RHOD_Pyr_redox Member 99.7 2.1E-17 4.6E-22 139.4 8.4 89 272-393 1-89 (90)
29 cd01535 4RHOD_Repeat_4 Member 99.7 2.3E-17 5E-22 152.7 9.1 99 277-405 2-100 (145)
30 KOG1530 Rhodanese-related sulf 99.7 3.3E-17 7.2E-22 148.2 9.0 116 267-400 20-135 (136)
31 PRK09629 bifunctional thiosulf 99.7 5.9E-17 1.3E-21 180.6 12.8 121 270-405 9-133 (610)
32 PLN02723 3-mercaptopyruvate su 99.7 6.9E-17 1.5E-21 167.2 12.1 120 270-404 22-154 (320)
33 PRK08762 molybdopterin biosynt 99.7 1.3E-16 2.7E-21 168.5 13.5 145 270-444 3-158 (376)
34 cd01530 Cdc25 Cdc25 phosphatas 99.7 6E-17 1.3E-21 145.3 9.1 99 271-393 3-120 (121)
35 cd01445 TST_Repeats Thiosulfat 99.7 5.8E-17 1.3E-21 148.8 9.0 108 272-393 1-137 (138)
36 COG0607 PspE Rhodanese-related 99.7 7.6E-17 1.7E-21 138.6 8.6 94 281-402 15-109 (110)
37 cd01529 4RHOD_Repeats Member o 99.7 1E-16 2.3E-21 136.5 8.2 87 284-394 10-96 (96)
38 cd01522 RHOD_1 Member of the R 99.7 8.2E-17 1.8E-21 143.0 7.8 103 272-394 1-104 (117)
39 cd01532 4RHOD_Repeat_1 Member 99.7 9.9E-17 2.1E-21 136.3 7.5 84 283-394 7-92 (92)
40 cd01531 Acr2p Eukaryotic arsen 99.6 5.6E-16 1.2E-20 136.1 8.9 101 270-395 2-112 (113)
41 PRK05320 rhodanese superfamily 99.6 2.9E-16 6.2E-21 158.4 7.9 107 265-395 105-216 (257)
42 PRK01415 hypothetical protein; 99.6 1.3E-15 2.8E-20 152.8 9.8 101 270-395 112-212 (247)
43 TIGR02981 phageshock_pspE phag 99.6 1.4E-15 3E-20 133.0 8.5 81 285-394 17-97 (101)
44 COG2897 SseA Rhodanese-related 99.6 3E-15 6.6E-20 152.8 11.5 127 271-411 12-148 (285)
45 cd01443 Cdc25_Acr2p Cdc25 enzy 99.6 1.6E-15 3.4E-20 133.5 8.1 99 270-393 2-112 (113)
46 cd00158 RHOD Rhodanese Homolog 99.6 1.3E-15 2.9E-20 125.1 7.0 87 278-393 3-89 (89)
47 PRK10287 thiosulfate:cyanide s 99.6 3.7E-15 8E-20 131.1 7.7 81 285-394 19-99 (104)
48 PRK07878 molybdopterin biosynt 99.6 7.8E-15 1.7E-19 155.9 10.2 101 270-398 287-387 (392)
49 PRK00142 putative rhodanese-re 99.6 1.1E-14 2.3E-19 150.9 9.8 101 270-395 112-212 (314)
50 PRK07411 hypothetical protein; 99.5 3.3E-14 7.2E-19 151.1 10.3 104 270-399 282-386 (390)
51 PRK05597 molybdopterin biosynt 99.4 1.4E-13 3E-18 144.7 8.4 172 189-394 166-354 (355)
52 cd01446 DSP_MapKP N-terminal r 99.4 4.6E-13 1E-17 120.7 10.0 106 271-394 1-126 (132)
53 KOG2017 Molybdopterin synthase 99.4 2.1E-13 4.5E-18 140.7 7.4 182 185-395 200-419 (427)
54 PRK05600 thiamine biosynthesis 99.4 8.5E-13 1.8E-17 139.6 7.4 170 189-390 182-369 (370)
55 PRK01269 tRNA s(4)U8 sulfurtra 99.1 2E-10 4.2E-15 125.5 7.3 73 285-387 406-482 (482)
56 KOG1529 Mercaptopyruvate sulfu 99.0 1.1E-09 2.4E-14 111.2 8.8 120 271-405 6-140 (286)
57 COG1054 Predicted sulfurtransf 99.0 5.7E-10 1.2E-14 113.8 5.5 100 271-395 114-213 (308)
58 KOG1529 Mercaptopyruvate sulfu 98.8 1.5E-08 3.3E-13 103.0 7.6 94 285-394 171-275 (286)
59 COG2603 Predicted ATPase [Gene 98.5 1.8E-07 4E-12 95.3 8.2 170 285-500 14-200 (334)
60 KOG3772 M-phase inducer phosph 98.5 2.1E-07 4.6E-12 96.4 7.1 104 269-395 155-276 (325)
61 PRK09564 coenzyme A disulfide 98.4 9.2E-08 2E-12 102.1 0.5 111 91-225 275-394 (444)
62 TIGR03385 CoA_CoA_reduc CoA-di 98.1 6.4E-07 1.4E-11 95.5 0.6 111 91-225 262-381 (427)
63 PRK07846 mycothione reductase; 98.0 1.2E-06 2.7E-11 94.8 0.7 109 90-225 292-404 (451)
64 PRK14727 putative mercuric red 98.0 1.2E-06 2.7E-11 95.3 0.7 107 91-225 314-423 (479)
65 PRK06370 mercuric reductase; V 98.0 1.3E-06 2.8E-11 94.4 0.4 108 91-225 302-412 (463)
66 TIGR01424 gluta_reduc_2 glutat 98.0 1.4E-06 3E-11 93.9 0.1 108 91-225 294-405 (446)
67 PRK13512 coenzyme A disulfide 98.0 1.8E-06 3.9E-11 92.9 0.6 110 91-225 270-388 (438)
68 PRK06467 dihydrolipoamide dehy 97.9 2.4E-06 5.2E-11 93.0 0.6 107 91-225 305-414 (471)
69 PRK13748 putative mercuric red 97.9 3.5E-06 7.7E-11 93.0 0.9 107 91-225 396-505 (561)
70 TIGR03452 mycothione_red mycot 97.8 5.9E-06 1.3E-10 89.5 0.8 107 91-225 296-407 (452)
71 TIGR02053 MerA mercuric reduct 97.8 5.9E-06 1.3E-10 89.2 0.3 107 91-225 297-407 (463)
72 PRK05249 soluble pyridine nucl 97.8 9.2E-06 2E-10 87.5 1.7 106 91-225 303-412 (461)
73 PRK06416 dihydrolipoamide dehy 97.7 8.5E-06 1.8E-10 87.9 0.4 105 91-225 302-411 (462)
74 PRK08010 pyridine nucleotide-d 97.7 9.9E-06 2.1E-10 87.0 0.8 107 91-225 285-396 (441)
75 PTZ00153 lipoamide dehydrogena 97.7 7.5E-06 1.6E-10 93.1 -0.2 118 91-225 463-609 (659)
76 PRK07818 dihydrolipoamide dehy 97.7 1E-05 2.2E-10 87.7 0.6 106 91-225 304-415 (466)
77 PLN02507 glutathione reductase 97.7 1.2E-05 2.7E-10 88.3 1.1 106 92-225 332-442 (499)
78 PRK14694 putative mercuric red 97.6 1.4E-05 2.9E-10 86.8 0.5 107 91-225 303-412 (468)
79 PRK07845 flavoprotein disulfid 97.6 1.5E-05 3.3E-10 86.5 0.8 107 91-225 305-415 (466)
80 PLN02546 glutathione reductase 97.6 1.4E-05 2.9E-10 89.4 0.2 109 91-225 381-491 (558)
81 PRK05976 dihydrolipoamide dehy 97.6 1.6E-05 3.4E-10 86.4 0.5 107 91-225 311-421 (472)
82 PTZ00058 glutathione reductase 97.6 1.6E-05 3.5E-10 88.9 0.0 111 91-225 366-516 (561)
83 PRK06292 dihydrolipoamide dehy 97.5 2.2E-05 4.7E-10 84.6 0.4 107 91-225 299-409 (460)
84 PRK06115 dihydrolipoamide dehy 97.5 2.5E-05 5.4E-10 84.9 0.4 103 91-225 306-415 (466)
85 TIGR01423 trypano_reduc trypan 97.5 2.8E-05 6E-10 85.4 0.5 109 90-225 318-430 (486)
86 PRK06912 acoL dihydrolipoamide 97.4 4E-05 8.7E-10 83.0 0.3 106 91-225 298-407 (458)
87 PRK06116 glutathione reductase 97.3 4.9E-05 1.1E-09 81.9 -0.2 108 91-225 296-409 (450)
88 COG5105 MIH1 Mitotic inducer, 97.3 0.00048 1E-08 71.6 6.5 99 269-394 241-357 (427)
89 PRK06327 dihydrolipoamide dehy 97.3 7.5E-05 1.6E-09 81.3 0.4 107 90-225 314-424 (475)
90 TIGR01421 gluta_reduc_1 glutat 97.2 8.2E-05 1.8E-09 80.6 -0.2 106 91-225 296-409 (450)
91 TIGR01350 lipoamide_DH dihydro 97.0 0.00017 3.6E-09 77.8 0.3 107 90-225 299-410 (461)
92 TIGR01438 TGR thioredoxin and 96.8 0.00028 6.1E-09 77.4 0.2 68 91-163 311-383 (484)
93 PRK07251 pyridine nucleotide-d 96.8 0.00036 7.8E-09 74.9 0.7 108 90-225 283-395 (438)
94 PRK14989 nitrite reductase sub 96.7 0.00047 1E-08 80.8 0.8 94 91-215 274-370 (847)
95 PTZ00052 thioredoxin reductase 96.5 0.00067 1.5E-08 74.7 0.3 68 91-163 308-380 (499)
96 COG1249 Lpd Pyruvate/2-oxoglut 95.6 0.0056 1.2E-07 67.2 2.0 104 91-215 303-408 (454)
97 PF04273 DUF442: Putative phos 94.9 0.029 6.3E-07 50.3 3.8 90 269-376 12-107 (110)
98 TIGR02374 nitri_red_nirB nitri 94.4 0.021 4.5E-07 66.6 2.1 62 91-154 265-330 (785)
99 TIGR01244 conserved hypothetic 93.3 0.17 3.7E-06 46.4 5.7 111 270-401 13-130 (135)
100 PF02852 Pyr_redox_dim: Pyridi 92.1 0.0084 1.8E-07 52.5 -4.5 61 144-225 9-69 (110)
101 COG0446 HcaD Uncharacterized N 91.7 0.11 2.3E-06 53.9 2.3 109 85-215 258-380 (415)
102 PRK04965 NADH:flavorubredoxin 90.7 0.13 2.8E-06 54.2 1.9 46 91-138 266-311 (377)
103 PRK00142 putative rhodanese-re 90.2 0.081 1.8E-06 55.5 -0.2 87 268-383 12-105 (314)
104 COG1251 NirB NAD(P)H-nitrite r 84.8 0.6 1.3E-05 54.0 2.5 59 91-150 270-331 (793)
105 KOG1093 Predicted protein kina 83.6 0.45 9.7E-06 53.5 0.9 96 271-392 623-718 (725)
106 PRK09754 phenylpropionate diox 82.9 0.68 1.5E-05 49.3 1.9 42 91-135 268-315 (396)
107 PF13350 Y_phosphatase3: Tyros 82.7 6.4 0.00014 36.9 8.2 32 269-301 27-58 (164)
108 KOG1717 Dual specificity phosp 80.9 1.4 3.1E-05 45.5 3.2 100 272-394 6-123 (343)
109 cd00127 DSPc Dual specificity 74.0 6.9 0.00015 34.7 5.3 27 353-379 80-109 (139)
110 KOG3636 Uncharacterized conser 72.9 10 0.00022 41.9 7.1 91 287-393 327-427 (669)
111 COG3453 Uncharacterized protei 61.0 21 0.00046 33.1 5.6 86 268-372 12-105 (130)
112 cd01445 TST_Repeats Thiosulfat 59.6 18 0.00039 33.3 5.1 21 228-248 83-103 (138)
113 PF01451 LMWPc: Low molecular 57.0 8.4 0.00018 34.8 2.4 36 357-392 1-41 (138)
114 PF05706 CDKN3: Cyclin-depende 57.0 28 0.00061 33.7 6.1 81 289-379 75-160 (168)
115 PLN02727 NAD kinase 56.9 22 0.00047 42.8 6.3 83 269-366 266-353 (986)
116 TIGR03167 tRNA_sel_U_synt tRNA 55.3 15 0.00032 38.7 4.3 33 271-304 137-172 (311)
117 PF00782 DSPc: Dual specificit 54.6 45 0.00098 29.4 6.7 28 353-380 72-102 (133)
118 PF09992 DUF2233: Predicted pe 53.0 17 0.00036 34.1 3.9 41 353-393 99-144 (170)
119 TIGR03169 Nterm_to_SelD pyridi 52.9 7.1 0.00015 40.7 1.5 36 91-127 272-308 (364)
120 PF03853 YjeF_N: YjeF-related 47.4 30 0.00066 32.8 4.7 50 352-402 23-87 (169)
121 smart00226 LMWPc Low molecular 42.5 26 0.00055 31.7 3.2 36 357-392 1-37 (140)
122 PTZ00318 NADH dehydrogenase-li 41.9 14 0.0003 39.9 1.6 37 91-127 309-345 (424)
123 COG2519 GCD14 tRNA(1-methylade 40.6 1.1E+02 0.0023 31.8 7.5 32 352-383 186-217 (256)
124 COG0062 Uncharacterized conser 39.8 48 0.001 33.1 4.9 31 354-385 49-82 (203)
125 PLN03050 pyridoxine (pyridoxam 38.7 45 0.00098 34.0 4.6 30 355-385 61-93 (246)
126 smart00195 DSPc Dual specifici 36.6 46 0.001 29.6 3.9 29 352-380 76-107 (138)
127 KOG4716 Thioredoxin reductase 35.2 25 0.00055 38.1 2.2 64 90-157 331-396 (503)
128 COG2085 Predicted dinucleotide 34.1 1.8E+02 0.0039 29.3 7.9 27 354-380 147-174 (211)
129 PRK10126 tyrosine phosphatase; 33.9 47 0.001 30.7 3.6 37 355-392 3-40 (147)
130 TIGR00197 yjeF_nterm yjeF N-te 32.9 68 0.0015 31.5 4.7 33 352-385 43-78 (205)
131 PF02590 SPOUT_MTase: Predicte 31.3 1.3E+02 0.0029 28.6 6.2 47 346-392 59-110 (155)
132 PRK10565 putative carbohydrate 31.1 68 0.0015 36.1 4.9 33 352-385 58-93 (508)
133 TIGR02689 ars_reduc_gluta arse 30.0 80 0.0017 28.3 4.3 35 356-390 2-37 (126)
134 PRK11391 etp phosphotyrosine-p 28.3 68 0.0015 29.7 3.6 37 355-392 3-40 (144)
135 PRK12770 putative glutamate sy 27.5 31 0.00067 36.1 1.4 32 91-127 316-347 (352)
136 PF04722 Ssu72: Ssu72-like pro 27.3 89 0.0019 31.1 4.4 30 356-386 3-33 (195)
137 PLN03049 pyridoxine (pyridoxam 26.8 90 0.002 34.8 4.9 44 355-399 60-116 (462)
138 PTZ00242 protein tyrosine phos 26.5 3.6E+02 0.0078 25.6 8.3 25 352-376 96-122 (166)
139 KOG1335 Dihydrolipoamide dehyd 26.4 33 0.00071 37.8 1.3 103 91-215 345-449 (506)
140 PRK08762 molybdopterin biosynt 25.6 2.9E+02 0.0063 29.6 8.3 43 353-396 134-176 (376)
141 COG2453 CDC14 Predicted protei 25.6 73 0.0016 30.5 3.4 27 353-379 104-133 (180)
142 cd00115 LMWPc Substituted upda 24.7 64 0.0014 29.3 2.7 37 356-392 2-40 (141)
143 PLN02918 pyridoxine (pyridoxam 23.4 1.1E+02 0.0024 34.9 4.8 30 355-385 136-168 (544)
144 TIGR01292 TRX_reduct thioredox 23.3 43 0.00093 33.2 1.4 32 91-126 266-297 (300)
145 PF04343 DUF488: Protein of un 22.5 90 0.0019 27.9 3.2 21 274-294 2-22 (122)
146 TIGR00853 pts-lac PTS system, 21.9 1.1E+02 0.0023 26.6 3.4 26 354-379 3-32 (95)
147 PRK07688 thiamine/molybdopteri 20.6 67 0.0015 34.1 2.3 37 270-307 277-318 (339)
148 PRK13530 arsenate reductase; P 20.3 1.6E+02 0.0034 26.9 4.3 35 355-389 4-39 (133)
No 1
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.89 E-value=4.3e-23 Score=215.47 Aligned_cols=182 Identities=20% Similarity=0.227 Sum_probs=134.6
Q ss_pred CHHHHHHHHhCCCCcEEEEeCChhhhhhcCCccccccccccccccCcccccc--hhhhhhcCch--------------hh
Q 009581 273 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGG--SVKKLLRGGR--------------EL 336 (531)
Q Consensus 273 Sp~El~elL~~~~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~--~~~~Llk~p~--------------eL 336 (531)
...++.+++. ++.+|||||++.||..||||||+ |+|+.+... .++.+++... .+
T Consensus 4 ~~~~~~~~~~--~~~~lIDVRsp~Ef~~ghIpgAi--------niPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l 73 (345)
T PRK11784 4 DAQDFRALFL--NDTPLIDVRSPIEFAEGHIPGAI--------NLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNI 73 (345)
T ss_pred cHHHHHHHHh--CCCEEEECCCHHHHhcCCCCCee--------eCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhH
Confidence 4566766653 57899999999999999999999 999754322 2233332211 11
Q ss_pred HHHHHHHHHhhhcccC-CCcEEEEEe-CCCcHHHHHHHHHHHccCCceEEecchHHHHHHcCCceeccccchhhhhhhhc
Q 009581 337 DDTLTAAVIRNLKIVQ-DRSKVIVMD-ADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSETALTILNED 414 (531)
Q Consensus 337 ~~~L~algI~~Lk~l~-kd~~IVVyC-~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~aGLPV~~~~p~~a~s~l~~~ 414 (531)
.+.+... +..++ ++++||+|| ++|.||..+++.|+.+|| ++++|.||+.+|++.+++.....+
T Consensus 74 ~~~~~~~----~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~~~~~~---------- 138 (345)
T PRK11784 74 AAHREEA----WADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDTLEEAP---------- 138 (345)
T ss_pred HHHHHHH----HHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHHHhhhc----------
Confidence 1111111 11223 789999999 578999999999999999 599999999999998775544211
Q ss_pred HHHHHhhhcCCCceEE----chhHHHHH-HHHhcCChhhHHHHHHHhhcccccccceeecccCccccCCCCCCCCCChhH
Q 009581 415 AEAILEDINSSPVQFL----GFGVTIYR-RVASYNDAEDFKQDVRLLLAPVRIGARAFSWAAGKLETNRPGLPTSPSSVD 489 (531)
Q Consensus 415 ~~el~~~i~p~pv~vl----G~g~T~~~-rl~~~~~~~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~gl~~~p~~~~ 489 (531)
.+.+..++ |.|||.++ +|...+.+ ++|+|++++ ||||+| | .+++ ..|||++
T Consensus 139 --------~~~~~ivl~G~TGsGKT~iL~~L~~~~~~---vlDlE~~ae---hrGS~f----G-----~~~~-~qpsQ~~ 194 (345)
T PRK11784 139 --------AQFPLVVLGGNTGSGKTELLQALANAGAQ---VLDLEGLAN---HRGSSF----G-----RLGG-PQPSQKD 194 (345)
T ss_pred --------ccCceEecCCCCcccHHHHHHHHHhcCCe---EEECCchhh---hccccc----c-----CCCC-CCcchHH
Confidence 11233333 78999887 66655544 899999999 999999 9 8888 7899999
Q ss_pred HHHHHHHHHHhcCC
Q 009581 490 VQNRVLQAAAKHES 503 (531)
Q Consensus 490 ~~~~~~~~~~~~~~ 503 (531)
||+++.+++.++.+
T Consensus 195 Fe~~l~~~l~~~~~ 208 (345)
T PRK11784 195 FENLLAEALLKLDP 208 (345)
T ss_pred HHHHHHHHHHcCCC
Confidence 99999999999876
No 2
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.87 E-value=3.9e-22 Score=205.70 Aligned_cols=177 Identities=20% Similarity=0.207 Sum_probs=126.3
Q ss_pred CcEEEEeCChhhhhhcCCccccccccccccccCccccc--chhhhhhcCchhhH-----H-----HHHHHHHhhh-cccC
Q 009581 286 NAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVG--GSVKKLLRGGRELD-----D-----TLTAAVIRNL-KIVQ 352 (531)
Q Consensus 286 ~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~--~~~~~Llk~p~eL~-----~-----~L~algI~~L-k~l~ 352 (531)
+.+|||||+|.||.+||||||+ |+|+.+.. ..++.+++...... . .+.. .+..+ +..+
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAi--------niPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~-~i~~~~~~~~ 72 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAI--------NLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAA-HVEQWRAFAD 72 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCE--------ecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHH-HHHHHHhhcC
Confidence 4589999999999999999999 99974332 22333333111110 0 1111 11111 1124
Q ss_pred CCcEEEEEe-CCCcHHHHHHHHHHHccCCceEEecchHHHHHHcCCceeccccchhhhhhhhcHHHHHhhhcCCCceEEc
Q 009581 353 DRSKVIVMD-ADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSETALTILNEDAEAILEDINSSPVQFLG 431 (531)
Q Consensus 353 kd~~IVVyC-~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~aGLPV~~~~p~~a~s~l~~~~~el~~~i~p~pv~vlG 431 (531)
++.+||+|| ++|.||..+++.|+.+|| +|++|+||+.+|+..+++.....+.... .+.+.+ ..|
T Consensus 73 ~~~~vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~~~~~~~~~------------~~vl~g--~tg 137 (311)
T TIGR03167 73 GPPQPLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQLEELPQPFP------------LIVLGG--MTG 137 (311)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhhhccCCCCc------------eeccCC--CCC
Confidence 555699999 578999999999999999 6999999999999998876654221100 000111 247
Q ss_pred hhHHHHH-HHHhcCChhhHHHHHHHhhcccccccceeecccCccccCCCCCCCCCChhHHHHHHHHHHHhc
Q 009581 432 FGVTIYR-RVASYNDAEDFKQDVRLLLAPVRIGARAFSWAAGKLETNRPGLPTSPSSVDVQNRVLQAAAKH 501 (531)
Q Consensus 432 ~g~T~~~-rl~~~~~~~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~gl~~~p~~~~~~~~~~~~~~~~ 501 (531)
+|+|.++ .+...+.. ++|+|++++ ||||+| | +|+++..|||+.|++++.+++.+.
T Consensus 138 ~gKt~Ll~~L~~~~~~---VvDlr~~a~---hrGs~f----G-----~~~~~~qpsq~~fe~~L~~~l~~~ 193 (311)
T TIGR03167 138 SGKTELLHALANAGAQ---VLDLEGLAN---HRGSSF----G-----ALGLGPQPSQKRFENALAEALRRL 193 (311)
T ss_pred cCHHHHHHHHhcCCCe---EEECCchHH---hcCccc----C-----CCCCCCCCchHHHHHHHHHHHHhC
Confidence 8999998 45554434 899999999 999999 9 999989999999999999999876
No 3
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.82 E-value=4.6e-20 Score=160.88 Aligned_cols=99 Identities=26% Similarity=0.218 Sum_probs=84.6
Q ss_pred CccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhc
Q 009581 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (531)
Q Consensus 270 ~~ISp~El~elL~~~~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk 349 (531)
..++++++.+++..+.+.+|||||++.||..||||||+ |+|+.++...+..+.+
T Consensus 10 ~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgai--------nip~~~l~~~~~~l~~------------------ 63 (109)
T cd01533 10 PSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSV--------SCPGAELVLRVGELAP------------------ 63 (109)
T ss_pred CcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCce--------eCCHHHHHHHHHhcCC------------------
Confidence 46999999998865446789999999999999999999 9998766544333211
Q ss_pred ccCCCcEEEEEeCCCcHHHHHHHHHHHccCCc-eEEecchHHHHHHcC
Q 009581 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMR-AFLVQGGFQSWVKEG 396 (531)
Q Consensus 350 ~l~kd~~IVVyC~sG~RS~~AA~~L~~lGf~n-V~~L~GG~~aW~~aG 396 (531)
+++++||+||++|.||..+++.|+.+||++ |++|+||+.+|..+|
T Consensus 64 --~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 64 --DPRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred --CCCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 367899999999999999999999999987 999999999999875
No 4
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.80 E-value=1.6e-19 Score=155.17 Aligned_cols=98 Identities=21% Similarity=0.251 Sum_probs=81.3
Q ss_pred ccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 009581 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (531)
Q Consensus 271 ~ISp~El~elL~~~~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk~ 350 (531)
.|+++++.+++. .++.+|||||++.||+.||||||+ |+|+.++......+ .+ +..
T Consensus 3 ~is~~~l~~~~~-~~~~~iiDvR~~~e~~~ghi~gA~--------~ip~~~~~~~~~~~-------~~---------~~~ 57 (101)
T cd01518 3 YLSPAEWNELLE-DPEVVLLDVRNDYEYDIGHFKGAV--------NPDVDTFREFPFWL-------DE---------NLD 57 (101)
T ss_pred cCCHHHHHHHHc-CCCEEEEEcCChhhhhcCEecccc--------CCCcccHhHhHHHH-------Hh---------hhh
Confidence 589999999884 567899999999999999999999 99987664322111 11 001
Q ss_pred cCCCcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHH
Q 009581 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (531)
Q Consensus 351 l~kd~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~ 393 (531)
.+++++||+||++|.||..+++.|+.+||++|++|+||+.+|.
T Consensus 58 ~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~ 100 (101)
T cd01518 58 LLKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGILKYL 100 (101)
T ss_pred hcCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHHHHh
Confidence 2588999999999999999999999999999999999999996
No 5
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.78 E-value=6.2e-19 Score=150.58 Aligned_cols=98 Identities=29% Similarity=0.470 Sum_probs=84.8
Q ss_pred CccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhc
Q 009581 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (531)
Q Consensus 270 ~~ISp~El~elL~~~~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk 349 (531)
..++++++.+++.. +.+|||+|+++||..+|||||+ |+|+.++.....
T Consensus 2 ~~i~~~el~~~~~~--~~~liDvR~~~e~~~~hi~ga~--------~ip~~~~~~~~~---------------------- 49 (99)
T cd01527 2 TTISPNDACELLAQ--GAVLVDIREPDEYLRERIPGAR--------LVPLSQLESEGL---------------------- 49 (99)
T ss_pred CccCHHHHHHHHHC--CCEEEECCCHHHHHhCcCCCCE--------ECChhHhccccc----------------------
Confidence 36899999998853 3899999999999999999999 999776654211
Q ss_pred ccCCCcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHHHcCCce
Q 009581 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (531)
Q Consensus 350 ~l~kd~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~aGLPV 399 (531)
.++++++||+||++|.||..+++.|+++||+++++|.||+.+|...|+|+
T Consensus 50 ~~~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 50 PLVGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred CCCCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 12578999999999999999999999999999999999999999999875
No 6
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.78 E-value=6.8e-19 Score=178.50 Aligned_cols=214 Identities=19% Similarity=0.200 Sum_probs=142.2
Q ss_pred ceehhhhhhhhcccceeccCCc----------eeeEccCCcccCCCchhHhhhhhhhcccceeeecccchHHHHHHHHHH
Q 009581 161 AAVDVLRNTIVALEESMTNGAS----------FVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEG 230 (531)
Q Consensus 161 ~~~d~l~~~~~~~e~~~~~~~~----------~~~y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~~~~eg 230 (531)
++.+||++.+..-+..+++.++ ...|..||.+..+..+...+ . ...+ +....... -..++.
T Consensus 7 vs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~--~--~~~~----~~~~~~~~-~~~~~~ 77 (281)
T PRK11493 7 VAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEAL--S--DHTS----PLPHMMPR-PETFAV 77 (281)
T ss_pred cCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHh--c--CCCC----CCCCCCCC-HHHHHH
Confidence 5667888888666667777775 34577778887664443332 1 1111 00111100 122556
Q ss_pred HhHhcCcCCCCCeeehhhhHhHHHHHHHHHHHHHhCCCC---------------------C-----------------cc
Q 009581 231 LERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYGGYS---------------------G-----------------DL 272 (531)
Q Consensus 231 v~k~lgv~~~dpVv~~~~~~G~~~~l~~~~~~~~~~g~~---------------------~-----------------~I 272 (531)
+-+.+|++.++||++|.-.-+..+. . +||.+...|+. . ..
T Consensus 78 ~~~~~Gi~~d~~VVvyc~~~~~~a~-~-~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~ 155 (281)
T PRK11493 78 AMRELGVNQDKHLVVYDEGNLFSAP-R-AWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAVV 155 (281)
T ss_pred HHHHcCCCCCCEEEEECCCCCchHH-H-HHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCCCCCCCcccccCCcccee
Confidence 6677899999999986643221111 1 12222221111 0 01
Q ss_pred CHHHHHHHHhCCCCcEEEEeCChhhhh-----------hcCCccccccccccccccCcccccchhhhhhcCchhhHHHHH
Q 009581 273 SPKSTLELLRGKENAVLIDVRHEDLRE-----------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLT 341 (531)
Q Consensus 273 Sp~El~elL~~~~~avLIDVRs~eEf~-----------~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~ 341 (531)
+.+++...+ +..+.+|||+|+++||. .||||||+ |+|+.++... ..++.+++++..|.
T Consensus 156 ~~~~v~~~~-~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~--------~i~~~~~~~~--~~~~~~~~l~~~~~ 224 (281)
T PRK11493 156 RLTDVLLAS-HEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGAL--------NVPWTELVRE--GELKTTDELDAIFF 224 (281)
T ss_pred cHHHHHHhh-cCCCcEEEeCCCccceeeeccCCCCCcccccCCCcC--------CCCHHHhcCC--CCcCCHHHHHHHHH
Confidence 223444344 23467999999999994 69999999 9997766532 23566788888888
Q ss_pred HHHHhhhcccCCCcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHHH-cCCceecc
Q 009581 342 AAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLRIKEL 402 (531)
Q Consensus 342 algI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~-aGLPV~~~ 402 (531)
+.|+. ++++||+||++|.||..+++.|+.+||++|++|+|||.+|.. .++|++.+
T Consensus 225 ~~g~~------~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~ 280 (281)
T PRK11493 225 GRGVS------FDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPA 280 (281)
T ss_pred hcCCC------CCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence 88874 789999999999999999999999999999999999999998 79998864
No 7
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.78 E-value=1.1e-18 Score=180.47 Aligned_cols=216 Identities=19% Similarity=0.222 Sum_probs=146.4
Q ss_pred cceehhhhhhhhcccceeccCC--------c-eeeEccCCcccCCCchhHhhhhhhhcccceeeecccchHHHHHHHHHH
Q 009581 160 VAAVDVLRNTIVALEESMTNGA--------S-FVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEG 230 (531)
Q Consensus 160 ~~~~d~l~~~~~~~e~~~~~~~--------~-~~~y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~~~~eg 230 (531)
=|+.+||++.+..-+..+++.+ + ...|..||++..+..++.++. ...+.....+... ..++.
T Consensus 23 lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~----~~~~~~~~~lp~~-----~~~~~ 93 (320)
T PLN02723 23 VVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGIS----DRTTDLPHMLPSE-----EAFAA 93 (320)
T ss_pred eecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhc----CCCCCcCCCCCCH-----HHHHH
Confidence 4677888888755445555542 1 246777888877755555431 1112111111111 22666
Q ss_pred HhHhcCcCCCCCeeehhhhHhHHHHHHHHHHHHHh------------------CCCC--C--------------------
Q 009581 231 LERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTY------------------GGYS--G-------------------- 270 (531)
Q Consensus 231 v~k~lgv~~~dpVv~~~~~~G~~~~l~~~~~~~~~------------------~g~~--~-------------------- 270 (531)
..+.+|++.+++||+|...-+..+.. +||.+.+ .|+. .
T Consensus 94 ~l~~~Gi~~~~~VVvY~~~g~~~a~r--~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~~~~~~~~~~~~~~~~~~~ 171 (320)
T PLN02723 94 AVSALGIENKDGVVVYDGKGIFSAAR--VWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSASGDAILKASAASEAIEKV 171 (320)
T ss_pred HHHHcCCCCCCEEEEEcCCCcchHHH--HHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCCCccccccccccccccccc
Confidence 67778999999999875322221111 1222221 1110 0
Q ss_pred -------------------ccCHHHHHHHHhCCCCcEEEEeCChhhh-----------hhcCCccccccccccccccCcc
Q 009581 271 -------------------DLSPKSTLELLRGKENAVLIDVRHEDLR-----------ERDGIPDLRRGARFRYASVYLP 320 (531)
Q Consensus 271 -------------------~ISp~El~elL~~~~~avLIDVRs~eEf-----------~~GHIPGAi~a~~~~~~nIPl~ 320 (531)
.++.+++.+.+. +++.+|||+|++.|| +.||||||+ |+|+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAv--------nip~~ 242 (320)
T PLN02723 172 YQGQTVSPITFQTKFQPHLVWTLEQVKKNIE-DKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSK--------CVPFP 242 (320)
T ss_pred cccCCCCCCcccccCCccceecHHHHHHhhc-CCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCc--------ccCHH
Confidence 035567777663 456889999999998 569999999 99977
Q ss_pred cccchhhhhhcCchhhHHHHHHHHHhhhcccCCCcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHHHc-CCce
Q 009581 321 EVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE-GLRI 399 (531)
Q Consensus 321 eL~~~~~~Llk~p~eL~~~L~algI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~a-GLPV 399 (531)
.+.+..+ .+++++++++.+.++|+. ++++||+||++|.||..+++.|+.+||++|++|+|||.+|... .+|+
T Consensus 243 ~~~~~~~-~~~~~~el~~~~~~~gi~------~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv 315 (320)
T PLN02723 243 QMLDSSQ-TLLPAEELKKRFEQEGIS------LDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPV 315 (320)
T ss_pred HhcCCCC-CCCCHHHHHHHHHhcCCC------CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCc
Confidence 6544323 467788999999888875 8899999999999999999999999999999999999999874 6787
Q ss_pred ecc
Q 009581 400 KEL 402 (531)
Q Consensus 400 ~~~ 402 (531)
++.
T Consensus 316 ~~~ 318 (320)
T PLN02723 316 ATS 318 (320)
T ss_pred cCC
Confidence 763
No 8
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.78 E-value=6e-19 Score=153.57 Aligned_cols=101 Identities=21% Similarity=0.306 Sum_probs=87.8
Q ss_pred CccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhc
Q 009581 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (531)
Q Consensus 270 ~~ISp~El~elL~~~~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk 349 (531)
..++++++.+++. ..+.++||||++.||..||||||+ |+|+..+...+..
T Consensus 5 ~~is~~el~~~l~-~~~~~ivDvR~~~e~~~ghi~gA~--------~ip~~~l~~~~~~--------------------- 54 (108)
T PRK00162 5 ECINVEQAHQKLQ-EGGAVLVDIRDPQSFAMGHAPGAF--------HLTNDSLGAFMRQ--------------------- 54 (108)
T ss_pred cccCHHHHHHHHH-cCCCEEEEcCCHHHHhcCCCCCCe--------ECCHHHHHHHHHh---------------------
Confidence 5799999999884 356899999999999999999999 9987655433322
Q ss_pred ccCCCcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHHHcCCceec
Q 009581 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKE 401 (531)
Q Consensus 350 ~l~kd~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~aGLPV~~ 401 (531)
++++++|++||.+|.+|..++..|+..||++|++|+||+.+|++.++|++.
T Consensus 55 -~~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~ 105 (108)
T PRK00162 55 -ADFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVA 105 (108)
T ss_pred -cCCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHHHHhcCCCccC
Confidence 257889999999999999999999999999999999999999999999875
No 9
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.78 E-value=6.4e-19 Score=150.04 Aligned_cols=93 Identities=16% Similarity=0.271 Sum_probs=77.8
Q ss_pred cCHHHHHHHHhCC-CCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 009581 272 LSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (531)
Q Consensus 272 ISp~El~elL~~~-~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk~ 350 (531)
|+++++.+++..+ ++.+|||||++.||..||||||+ |+|+.++......+.+
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~--------~ip~~~l~~~~~~~~~------------------- 53 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFR--------HTPGGQLVQETDHFAP------------------- 53 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcE--------eCCHHHHHHHHHHhcc-------------------
Confidence 6789999998654 35789999999999999999999 9997665443322211
Q ss_pred cCCCcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHH
Q 009581 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (531)
Q Consensus 351 l~kd~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~ 393 (531)
.++++||+||++|.||..+++.|+.+||+ |++|+||+.+|.
T Consensus 54 -~~~~~iv~~c~~G~rs~~aa~~L~~~G~~-v~~l~GG~~~W~ 94 (95)
T cd01534 54 -VRGARIVLADDDGVRADMTASWLAQMGWE-VYVLEGGLAAAL 94 (95)
T ss_pred -cCCCeEEEECCCCChHHHHHHHHHHcCCE-EEEecCcHHHhc
Confidence 25789999999999999999999999998 999999999996
No 10
>PLN02160 thiosulfate sulfurtransferase
Probab=99.77 E-value=8.6e-19 Score=160.53 Aligned_cols=115 Identities=17% Similarity=0.236 Sum_probs=89.4
Q ss_pred CCccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCccc--cccccccccccCcccccchhhhhhcCchhhHHHHHHHHHh
Q 009581 269 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL--RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIR 346 (531)
Q Consensus 269 ~~~ISp~El~elL~~~~~avLIDVRs~eEf~~GHIPGA--i~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~ 346 (531)
...++++++.+++. ++.+|||||++.||..|||||| + |+|+..+. .... +.+++++... ..
T Consensus 14 ~~~i~~~e~~~~~~--~~~~lIDVR~~~E~~~ghIpgA~~i--------niP~~~~~-~~~~-l~~~~~~~~~-~~---- 76 (136)
T PLN02160 14 VVSVDVSQAKTLLQ--SGHQYLDVRTQDEFRRGHCEAAKIV--------NIPYMLNT-PQGR-VKNQEFLEQV-SS---- 76 (136)
T ss_pred eeEeCHHHHHHHHh--CCCEEEECCCHHHHhcCCCCCccee--------cccchhcC-cccc-cCCHHHHHHH-Hh----
Confidence 34689999999885 3468999999999999999999 7 88864332 1111 1122222211 10
Q ss_pred hhcccCCCcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHHHcCCceeccc
Q 009581 347 NLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELK 403 (531)
Q Consensus 347 ~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~aGLPV~~~~ 403 (531)
.++++++||+||++|.||..++..|...||++|++|.|||.+|.++|+|+.+..
T Consensus 77 ---~~~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 130 (136)
T PLN02160 77 ---LLNPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEE 130 (136)
T ss_pred ---ccCCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccccc
Confidence 125789999999999999999999999999999999999999999999999863
No 11
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.77 E-value=9.5e-19 Score=149.91 Aligned_cols=99 Identities=23% Similarity=0.248 Sum_probs=80.2
Q ss_pred cCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhccc
Q 009581 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIV 351 (531)
Q Consensus 272 ISp~El~elL~~~~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk~l 351 (531)
|+++++.+++.++++++|||||+++||+.||||||+ |+|+.++....... ... .+..+
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~--------~ip~~~~~~~~~~~------~~~--------~~~~~ 58 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGEN--------NTPYFDPYFDFLEI------EED--------ILDQL 58 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCc--------ccccccchHHHHHh------hHH--------HHhhC
Confidence 578999999876567899999999999999999999 99987654322000 000 01124
Q ss_pred CCCcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHH
Q 009581 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (531)
Q Consensus 352 ~kd~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~ 393 (531)
+++++||+||++|.||..++..|+.+||+ +++|.|||.+|.
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 68899999999999999999999999998 999999999996
No 12
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.77 E-value=1.3e-18 Score=153.88 Aligned_cols=110 Identities=25% Similarity=0.299 Sum_probs=92.6
Q ss_pred cCHHHHHHHHhCCCCcEEEEeCCh-------hhhhhcCCccccccccccccccCcccccch---hhhhhcCchhhHHHHH
Q 009581 272 LSPKSTLELLRGKENAVLIDVRHE-------DLRERDGIPDLRRGARFRYASVYLPEVGGS---VKKLLRGGRELDDTLT 341 (531)
Q Consensus 272 ISp~El~elL~~~~~avLIDVRs~-------eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~---~~~Llk~p~eL~~~L~ 341 (531)
++++++.+++.+ ++.+|||+|++ .+|..||||||+ |+|+.++... ....+++++++.+.+.
T Consensus 2 i~~~~l~~~l~~-~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd01448 2 VSPDWLAEHLDD-PDVRILDARWYLPDRDGRKEYLEGHIPGAV--------FFDLDEDLDDKSPGPHMLPSPEEFAELLG 72 (122)
T ss_pred cCHHHHHHHhCC-CCeEEEEeecCCCCCchhhHHhhCCCCCCE--------EcChhhccccCCCCCCCCCCHHHHHHHHH
Confidence 688999998853 57899999999 999999999999 8997666542 2335666778888777
Q ss_pred HHHHhhhcccCCCcEEEEEeCC-CcHHHHHHHHHHHccCCceEEecchHHHHHHcC
Q 009581 342 AAVIRNLKIVQDRSKVIVMDAD-GTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (531)
Q Consensus 342 algI~~Lk~l~kd~~IVVyC~s-G~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~aG 396 (531)
..++ +++++||+||++ |.++..+++.|+.+||++|++|+|||.+|.++|
T Consensus 73 ~~~~------~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 73 SLGI------SNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred HcCC------CCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 6665 489999999999 589999999999999999999999999998865
No 13
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.76 E-value=2.6e-18 Score=175.11 Aligned_cols=216 Identities=18% Similarity=0.197 Sum_probs=152.9
Q ss_pred cceehhhhhhhh-------cccceeccCCceeeEccCCcccCCCchhHhhhhhhhcccceeeecccchHHHHHHHHHHHh
Q 009581 160 VAAVDVLRNTIV-------ALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLE 232 (531)
Q Consensus 160 ~~~~d~l~~~~~-------~~e~~~~~~~~~~~y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~~~~egv~ 232 (531)
-++.|||.+.+. .+........+...|.-||++..+..+.... ......+. .++-...| ++.+.
T Consensus 12 lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~--~~~~~~~~--~~lp~~e~-----fa~~~ 82 (285)
T COG2897 12 LVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEAD--LSDPVPLP--HMLPSPEQ-----FAKLL 82 (285)
T ss_pred EEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHh--hcCCCCCC--CCCCCHHH-----HHHHH
Confidence 456678887754 3333444444357788888888887777766 33232111 22222222 66667
Q ss_pred HhcCcCCCCCeeehhhhHhHHHHHHHHHHHHHhCC------------------CC--------------------CccCH
Q 009581 233 RSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYGG------------------YS--------------------GDLSP 274 (531)
Q Consensus 233 k~lgv~~~dpVv~~~~~~G~~~~l~~~~~~~~~~g------------------~~--------------------~~ISp 274 (531)
..+||..+++||+|...-++.+.. +||.+++-| +. ...+.
T Consensus 83 ~~~GI~~d~tVVvYdd~~~~~A~r--a~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~~~~~~f~~~~~~~~~~~~ 160 (285)
T COG2897 83 GELGIRNDDTVVVYDDGGGFFAAR--AWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPPEPPPTTFSAKYNVKAVVDA 160 (285)
T ss_pred HHcCCCCCCEEEEECCCCCeehHH--HHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCCCCCCccccccCCccccCCH
Confidence 779999999999876644433322 334433311 10 02344
Q ss_pred HHHHHHHhCCCCcEEEEeCChhhhhh----------cCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHH
Q 009581 275 KSTLELLRGKENAVLIDVRHEDLRER----------DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV 344 (531)
Q Consensus 275 ~El~elL~~~~~avLIDVRs~eEf~~----------GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~alg 344 (531)
.+....+ +....+|||+|++++|.. ||||||+ |+|+..+.+ -+.+++.+++++.++...|
T Consensus 161 ~~~~~~~-~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAi--------Nipw~~~~~-~~~~~~~~~~~~~l~~~~g 230 (285)
T COG2897 161 TLVADAL-EVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAI--------NIPWTDLVD-DGGLFKSPEEIARLYADAG 230 (285)
T ss_pred HHHHHHh-cCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCc--------CcCHHHHhc-CCCccCcHHHHHHHHHhcC
Confidence 5566655 346778999999999987 9999999 999888776 4567777888888888888
Q ss_pred HhhhcccCCCcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHHHc-CCceecc
Q 009581 345 IRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE-GLRIKEL 402 (531)
Q Consensus 345 I~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~a-GLPV~~~ 402 (531)
|+ ++++||+||++|.||+..+..|+.+|+.++++|+|+|.+|.+. +.||+++
T Consensus 231 i~------~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g 283 (285)
T COG2897 231 ID------PDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETG 283 (285)
T ss_pred CC------CCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccC
Confidence 85 8999999999999999999999999998889999999999874 5577765
No 14
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.76 E-value=9.9e-19 Score=150.42 Aligned_cols=104 Identities=24% Similarity=0.283 Sum_probs=84.2
Q ss_pred CHHHHHHHHhCCCCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccC
Q 009581 273 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQ 352 (531)
Q Consensus 273 Sp~El~elL~~~~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk~l~ 352 (531)
+++++.+++...++.+|||+|++.||..||||||+ |+|+.++... ....++++.+.+...++ +
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~--------~ip~~~~~~~---~~~~~~~~~~~~~~~~~------~ 64 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAI--------NIPLSSLPDA---LALSEEEFEKKYGFPKP------S 64 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcE--------EechHHhhhh---hCCCHHHHHHHhcccCC------C
Confidence 57788887741467899999999999999999999 9998776432 22234455555544443 4
Q ss_pred CCcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHH
Q 009581 353 DRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (531)
Q Consensus 353 kd~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~ 393 (531)
++++||+||++|.||..+++.|+.+||++|++|+||+.+|.
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~~W~ 105 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWLDWA 105 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHHHHc
Confidence 78999999999999999999999999999999999999995
No 15
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.75 E-value=4.2e-18 Score=189.79 Aligned_cols=216 Identities=16% Similarity=0.095 Sum_probs=151.6
Q ss_pred cceehhhhhhhhcccceeccCCceeeEccCCcccCCCchhHhhhhhhhcccceeeecccchHHHHHHHHHHHhHhcCcCC
Q 009581 160 VAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP 239 (531)
Q Consensus 160 ~~~~d~l~~~~~~~e~~~~~~~~~~~y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~~~~egv~k~lgv~~ 239 (531)
-|+.+||++.+..-+..+++.++...|.-||.+..+..++.....--....+ .+.... .++...+.+|++.
T Consensus 10 lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~----~lp~~~-----~l~~~l~~lGI~~ 80 (610)
T PRK09629 10 VIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPG----LLPDTA-----DLEQLFGELGHNP 80 (610)
T ss_pred eecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCC----CCCCHH-----HHHHHHHHcCCCC
Confidence 4778899999977677888888888888888887664444332110001111 111111 2555666789999
Q ss_pred CCCeeehhhhHhHHHHHHHHHHHHHh------------------CCCC--------------------CccCHHHHHHHH
Q 009581 240 NDPIVPFVVFLGTSATLWIFYWWWTY------------------GGYS--------------------GDLSPKSTLELL 281 (531)
Q Consensus 240 ~dpVv~~~~~~G~~~~l~~~~~~~~~------------------~g~~--------------------~~ISp~El~elL 281 (531)
+++||+|.-.-+..+. . +||.+.+ .++. ..++.+++.+.+
T Consensus 81 d~~VVvYd~~g~~~A~-R-~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~~~~~~~~~~~~~~~~~v~~e~v~~~l 158 (610)
T PRK09629 81 DAVYVVYDDEGGGWAG-R-FIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDVPPVAGGPVTLTLHDEPTATREYLQSRL 158 (610)
T ss_pred CCEEEEECCCCCchHH-H-HHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCCCCCCCcceeeccCCcccccHHHHHHhh
Confidence 9999986543222211 1 1232222 1210 024667787777
Q ss_pred hCCCCcEEEEeCChhhhh--------hcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCC
Q 009581 282 RGKENAVLIDVRHEDLRE--------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQD 353 (531)
Q Consensus 282 ~~~~~avLIDVRs~eEf~--------~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk~l~k 353 (531)
. +++.+|||+|+++||. .||||||+ |+|+..+....+ .++.++++++++..+|++ +
T Consensus 159 ~-~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAv--------nip~~~~~~~~~-~lk~~~el~~~~~~~Gi~------~ 222 (610)
T PRK09629 159 G-AADLAIWDARAPTEYSGEKVVAAKGGHIPGAV--------NFEWTAGMDKAR-NLRIRQDMPEILRDLGIT------P 222 (610)
T ss_pred C-CCCcEEEECCCccccCCcccccccCCCCCCCe--------ecCHHHhcCCCC-CCCCHHHHHHHHHHcCCC------C
Confidence 3 4678899999999994 79999999 898755432222 356778899999888875 8
Q ss_pred CcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHHH-cCCceecc
Q 009581 354 RSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLRIKEL 402 (531)
Q Consensus 354 d~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~-aGLPV~~~ 402 (531)
+++||+||++|.||..++++|+.+||++|++|+|||.+|.+ .++|+++.
T Consensus 223 ~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~ 272 (610)
T PRK09629 223 DKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVP 272 (610)
T ss_pred CCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccC
Confidence 99999999999999999999999999999999999999987 57898874
No 16
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.75 E-value=2.1e-18 Score=151.31 Aligned_cols=106 Identities=20% Similarity=0.249 Sum_probs=89.3
Q ss_pred cCHHHHHHHHhCCCCcEEEEeCChhhhhh-----------cCCccccccccccccccCcccccchhhhhhcCchhhHHHH
Q 009581 272 LSPKSTLELLRGKENAVLIDVRHEDLRER-----------DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTL 340 (531)
Q Consensus 272 ISp~El~elL~~~~~avLIDVRs~eEf~~-----------GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L 340 (531)
++++++.+++. +++.+|||||++.||.. ||||||+ |+|+.++.... ..+++++++.+.+
T Consensus 1 ~s~~~l~~~l~-~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~--------~~p~~~~~~~~-~~~~~~~~~~~~~ 70 (118)
T cd01449 1 VTAEEVLANLD-SGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAV--------NIPWTSLLDED-GTFKSPEELRALF 70 (118)
T ss_pred CCHHHHHHhcC-CCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCc--------ccChHHhcCCC-CCcCCHHHHHHHH
Confidence 47888888874 45689999999999987 9999999 99977655432 2356677787777
Q ss_pred HHHHHhhhcccCCCcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHH
Q 009581 341 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (531)
Q Consensus 341 ~algI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~ 393 (531)
..+++. ++++||+||++|.||..+++.|+.+||+++++|+||+.+|.
T Consensus 71 ~~~~~~------~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~ 117 (118)
T cd01449 71 AALGIT------PDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWG 117 (118)
T ss_pred HHcCCC------CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhc
Confidence 777664 78999999999999999999999999999999999999996
No 17
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.74 E-value=6.2e-18 Score=148.03 Aligned_cols=101 Identities=19% Similarity=0.229 Sum_probs=84.6
Q ss_pred CCccCHHHHHHHHhCC-CCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhh
Q 009581 269 SGDLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRN 347 (531)
Q Consensus 269 ~~~ISp~El~elL~~~-~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~ 347 (531)
...++++++.+++.++ ++.+|||||++.+|..||||||+ ++|...+..+..
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~--------~ip~~~l~~~~~-------------------- 58 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAI--------NLPHREICENAT-------------------- 58 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCE--------eCCHHHhhhHhh--------------------
Confidence 3479999999998654 46899999999999999999999 898765542111
Q ss_pred hcccCCCcEEEEEeCCCc--HHHHHHHHHHHccCCceEEecchHHHHHHcCCce
Q 009581 348 LKIVQDRSKVIVMDADGT--RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (531)
Q Consensus 348 Lk~l~kd~~IVVyC~sG~--RS~~AA~~L~~lGf~nV~~L~GG~~aW~~aGLPV 399 (531)
..++++++||+||++|. +|..+++.|+.+||+ +++|+||+.+|+.+|+|+
T Consensus 59 -~~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 59 -AKLDKEKLFVVYCDGPGCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred -hcCCCCCeEEEEECCCCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 12357899999999874 899999999999995 999999999999999985
No 18
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.74 E-value=5.4e-18 Score=151.21 Aligned_cols=110 Identities=22% Similarity=0.247 Sum_probs=88.0
Q ss_pred CCccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhh
Q 009581 269 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL 348 (531)
Q Consensus 269 ~~~ISp~El~elL~~~~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~L 348 (531)
...|+++++.+++.+.++++|||||++.||..+|||||+ |+|+.++..+...+.+. .+...
T Consensus 7 ~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai--------~ip~~~~~~~~~~~~~~------~~~~~----- 67 (122)
T cd01526 7 EERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAI--------NIPLSELLSKAAELKSL------QELPL----- 67 (122)
T ss_pred ccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCe--------EccHHHHhhhhhhhhhh------hhccc-----
Confidence 457999999999865467899999999999999999999 99987765543322100 01111
Q ss_pred cccCCCcEEEEEeCCCcHHHHHHHHHHHccC-CceEEecchHHHHHHcCCc
Q 009581 349 KIVQDRSKVIVMDADGTRSKGIARSLRKLGV-MRAFLVQGGFQSWVKEGLR 398 (531)
Q Consensus 349 k~l~kd~~IVVyC~sG~RS~~AA~~L~~lGf-~nV~~L~GG~~aW~~aGLP 398 (531)
.++++++||+||++|.||..+++.|+.+|| ++|++|+|||.+|.....+
T Consensus 68 -~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~ 117 (122)
T cd01526 68 -DNDKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDP 117 (122)
T ss_pred -ccCCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCc
Confidence 135889999999999999999999999999 7999999999999987543
No 19
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.74 E-value=5.8e-18 Score=142.91 Aligned_cols=93 Identities=27% Similarity=0.372 Sum_probs=80.3
Q ss_pred ccCHHHHHHHHhCCCCcEEEEeCChhhhhh--cCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhh
Q 009581 271 DLSPKSTLELLRGKENAVLIDVRHEDLRER--DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL 348 (531)
Q Consensus 271 ~ISp~El~elL~~~~~avLIDVRs~eEf~~--GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~L 348 (531)
.++++++.+++.++.+.+|||||++.||.. ||||||+ |+|+.++.....
T Consensus 1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~--------~ip~~~~~~~~~--------------------- 51 (96)
T cd01444 1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAI--------HLDEDSLDDWLG--------------------- 51 (96)
T ss_pred CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCe--------eCCHHHHHHHHh---------------------
Confidence 378899999886445789999999999999 9999999 999876543322
Q ss_pred cccCCCcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHH
Q 009581 349 KIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (531)
Q Consensus 349 k~l~kd~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~ 393 (531)
.++++++||+||++|.+|..+++.|+..||++|++|+||+.+|.
T Consensus 52 -~~~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 52 -DLDRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred -hcCCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 12578999999999999999999999999999999999999995
No 20
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.74 E-value=9.8e-18 Score=144.09 Aligned_cols=97 Identities=27% Similarity=0.382 Sum_probs=81.0
Q ss_pred ccCHHHHHHHHhCC-CCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhc
Q 009581 271 DLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (531)
Q Consensus 271 ~ISp~El~elL~~~-~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk 349 (531)
+|+++++.+++... .+.++||+|+++||..+|||||+ |+|+.++......+.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~--------~ip~~~~~~~~~~~~------------------- 53 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFL--------HLPMSEIPERSKELD------------------- 53 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCE--------ecCHHHHHHHHHHhc-------------------
Confidence 47899999998653 36899999999999999999999 999866554332211
Q ss_pred ccCCCcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHHH
Q 009581 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (531)
Q Consensus 350 ~l~kd~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~ 394 (531)
..+++++||+||++|.||..+++.|.++||++|++|+||+.+|..
T Consensus 54 ~~~~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~w~~ 98 (101)
T cd01528 54 SDNPDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDAWSL 98 (101)
T ss_pred ccCCCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHHHhh
Confidence 113589999999999999999999999999999999999999975
No 21
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.73 E-value=1.3e-17 Score=150.31 Aligned_cols=106 Identities=25% Similarity=0.387 Sum_probs=80.4
Q ss_pred cCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCccccccccccccccCcccccchh--hhhhcC--------------chh
Q 009581 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSV--KKLLRG--------------GRE 335 (531)
Q Consensus 272 ISp~El~elL~~~~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~--~~Llk~--------------p~e 335 (531)
|+++++.+++. ++.+|||||++.||..||||||+ |||+..+..+. ..+++. ...
T Consensus 1 ~s~~el~~~l~--~~~~iiDvR~~~e~~~ghIpgAi--------nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (128)
T cd01520 1 ITAEDLLALRK--ADGPLIDVRSPKEFFEGHLPGAI--------NLPLLDDEERALVGTLYKQQGREAAIELGLELVSGK 70 (128)
T ss_pred CCHHHHHHHHh--cCCEEEECCCHHHhccCcCCCcE--------EccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhh
Confidence 68899999885 57899999999999999999999 99975432211 101110 112
Q ss_pred hHHHHHH---HHHhhhcccCCCcEEEEEeC-CCcHHHHHHHHHHHccCCceEEecchHHHHHH
Q 009581 336 LDDTLTA---AVIRNLKIVQDRSKVIVMDA-DGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (531)
Q Consensus 336 L~~~L~a---lgI~~Lk~l~kd~~IVVyC~-sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~ 394 (531)
+++.+.. .++ +++++||+||+ +|.||..+++.|+.+|| +|++|+||+.+|+.
T Consensus 71 ~~~~~~~~~~~~i------~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 71 LKRILNEAWEARL------ERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred HHHHHHHHHHhcc------CCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 3333332 244 58999999996 68999999999999999 69999999999975
No 22
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.73 E-value=1.1e-17 Score=157.64 Aligned_cols=110 Identities=16% Similarity=0.142 Sum_probs=83.8
Q ss_pred CccCHHHHHHHHhCCCCcEEEEeCChh----hhhhc---------CCccccccccccccccCcc---cccchhhhhhcCc
Q 009581 270 GDLSPKSTLELLRGKENAVLIDVRHED----LRERD---------GIPDLRRGARFRYASVYLP---EVGGSVKKLLRGG 333 (531)
Q Consensus 270 ~~ISp~El~elL~~~~~avLIDVRs~e----Ef~~G---------HIPGAi~a~~~~~~nIPl~---eL~~~~~~Llk~p 333 (531)
..|+++++.+++. +++.+|||||+++ ||..| |||||+ |+|+. ++.... .
T Consensus 36 ~~vs~~el~~~l~-~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv--------~ip~~~~~~l~~~~------~ 100 (162)
T TIGR03865 36 RVLDTEAAQALLA-RGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSL--------WLPNTGYGNLAPAW------Q 100 (162)
T ss_pred cccCHHHHHHHHh-CCCcEEEECCCCccccccccccceeccccCCCCCCcE--------EecccCCCCCCCch------h
Confidence 4799999999995 4568999999876 46544 999999 77742 222110 0
Q ss_pred hhhHHHHHHHHHhhhcccCCCcEEEEEeCCCc-HHHHHHHHHHHccCCceEEecchHHHHHHcCCce
Q 009581 334 RELDDTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (531)
Q Consensus 334 ~eL~~~L~algI~~Lk~l~kd~~IVVyC~sG~-RS~~AA~~L~~lGf~nV~~L~GG~~aW~~aGLPV 399 (531)
..+...+.+++. .+++++||+||++|. +|..+++.|+.+||++|++|+|||.+|+.+|+|+
T Consensus 101 ~~~~~~l~~~~~-----~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 101 AYFRRGLERATG-----GDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred HHHHHHHHHhcC-----CCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 112333333332 148999999999997 8999999999999999999999999999999985
No 23
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.73 E-value=1.4e-17 Score=168.95 Aligned_cols=121 Identities=15% Similarity=0.238 Sum_probs=101.6
Q ss_pred ccCHHHHHHHHhCCCCcEEEEeCC----------hhhhhhcCCccccccccccccccCcccccch---hhhhhcCchhhH
Q 009581 271 DLSPKSTLELLRGKENAVLIDVRH----------EDLRERDGIPDLRRGARFRYASVYLPEVGGS---VKKLLRGGRELD 337 (531)
Q Consensus 271 ~ISp~El~elL~~~~~avLIDVRs----------~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~---~~~Llk~p~eL~ 337 (531)
-++++++.+++ ++++.+|||+|+ +.+|..||||||+ |+|+..+... ...+++.++.++
T Consensus 6 lvs~~~l~~~l-~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (281)
T PRK11493 6 FVAADWLAEHI-DDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAV--------FFDIEALSDHTSPLPHMMPRPETFA 76 (281)
T ss_pred ccCHHHHHHhc-CCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCE--------EcCHHHhcCCCCCCCCCCCCHHHHH
Confidence 48899999988 456789999996 7899999999999 7776554322 234566778899
Q ss_pred HHHHHHHHhhhcccCCCcEEEEEeCCCc-HHHHHHHHHHHccCCceEEecchHHHHHHcCCceeccccch
Q 009581 338 DTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSET 406 (531)
Q Consensus 338 ~~L~algI~~Lk~l~kd~~IVVyC~sG~-RS~~AA~~L~~lGf~nV~~L~GG~~aW~~aGLPV~~~~p~~ 406 (531)
+.+..+|++ ++++||+||.+|. .+.++++.|+.+||++|++|+||+.+|.++|+|+....+.+
T Consensus 77 ~~~~~~Gi~------~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~ 140 (281)
T PRK11493 77 VAMRELGVN------QDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAVEL 140 (281)
T ss_pred HHHHHcCCC------CCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCCCC
Confidence 999999985 8999999999876 46788999999999999999999999999999998876544
No 24
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.73 E-value=1.2e-17 Score=143.77 Aligned_cols=100 Identities=18% Similarity=0.229 Sum_probs=78.4
Q ss_pred cCHHHHHHHHhCC-CCcEEEEeCChhhhhhcCCccccccccccccccCcccccc---hhhhhhcCchhhHHHHHHHHHhh
Q 009581 272 LSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGG---SVKKLLRGGRELDDTLTAAVIRN 347 (531)
Q Consensus 272 ISp~El~elL~~~-~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~---~~~~Llk~p~eL~~~L~algI~~ 347 (531)
|+++++.+++.+. ++.+|||||++.||..||||||+ |+|+.++.. .... ++....+..
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~--------~ip~~~~~~~~~~~~~-~~~~~~~~~--------- 62 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSI--------NIPFSSVFLKEGELEQ-LPTVPRLEN--------- 62 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCE--------eCCHHHhccccccccc-ccchHHHHh---------
Confidence 6889999998643 36899999999999999999999 898765431 1111 111111111
Q ss_pred hcccCCCcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHH
Q 009581 348 LKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (531)
Q Consensus 348 Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~ 393 (531)
.++++||+||.+|.+|..+++.|+.+||++|++|+||+.+|+
T Consensus 63 ----~~~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 63 ----YKGKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred ----hcCCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 247899999999999999999999999999999999999995
No 25
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.72 E-value=1.4e-17 Score=138.39 Aligned_cols=99 Identities=29% Similarity=0.446 Sum_probs=76.9
Q ss_pred CCCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCcEEEEEeCC
Q 009581 284 KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD 363 (531)
Q Consensus 284 ~~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk~l~kd~~IVVyC~s 363 (531)
+++.+|||+|++.||..+|||||+ |+|...+....... .. ..+...+...+ .+++++||+||.+
T Consensus 2 ~~~~~ivDvR~~~e~~~~hi~ga~--------~i~~~~~~~~~~~~-~~-~~~~~~~~~~~------~~~~~~iv~~c~~ 65 (100)
T smart00450 2 DEKVVLLDVRSPEEYEGGHIPGAV--------NIPLSELLDRRGEL-DI-LEFEELLKRLG------LDKDKPVVVYCRS 65 (100)
T ss_pred CCCEEEEECCCHHHhccCCCCCce--------eCCHHHhccCCCCc-CH-HHHHHHHHHcC------CCCCCeEEEEeCC
Confidence 357899999999999999999999 88876654332111 00 02222222222 3588999999999
Q ss_pred CcHHHHHHHHHHHccCCceEEecchHHHHHHcCCc
Q 009581 364 GTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLR 398 (531)
Q Consensus 364 G~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~aGLP 398 (531)
|.++..+++.|+.+||++|++|+||+.+|+..++|
T Consensus 66 g~~a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 66 GNRSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred CcHHHHHHHHHHHcCCCceEEecCCHHHHHhcCCC
Confidence 99999999999999999999999999999998865
No 26
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.72 E-value=1.7e-17 Score=141.59 Aligned_cols=102 Identities=22% Similarity=0.319 Sum_probs=79.5
Q ss_pred cCHHHHHHHHhCCCCcEEEEeCChhhh-hhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 009581 272 LSPKSTLELLRGKENAVLIDVRHEDLR-ERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (531)
Q Consensus 272 ISp~El~elL~~~~~avLIDVRs~eEf-~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk~ 350 (531)
|+++++.+++. +++.+|||+|++.+| ..||||||+ |+|+..+....... . .+.. ..
T Consensus 1 is~~el~~~~~-~~~~~iiDvR~~~~~~~~ghIpga~--------~ip~~~~~~~~~~~-----~---~~~~------~~ 57 (103)
T cd01447 1 LSPEDARALLG-SPGVLLVDVRDPRELERTGMIPGAF--------HAPRGMLEFWADPD-----S---PYHK------PA 57 (103)
T ss_pred CCHHHHHHHHh-CCCeEEEECCCHHHHHhcCCCCCcE--------EcccchhhhhcCcc-----c---cccc------cC
Confidence 57889988884 357899999999998 579999999 88876553221110 0 0000 01
Q ss_pred cCCCcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHHHcC
Q 009581 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (531)
Q Consensus 351 l~kd~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~aG 396 (531)
++++++||+||.+|.||..+++.|+.+||++|++|+||+.+|..+|
T Consensus 58 ~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 58 FAEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 3578999999999999999999999999999999999999998764
No 27
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.71 E-value=5.8e-17 Score=138.95 Aligned_cols=108 Identities=30% Similarity=0.508 Sum_probs=80.6
Q ss_pred CHHHHHHHHhCCCCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccC
Q 009581 273 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQ 352 (531)
Q Consensus 273 Sp~El~elL~~~~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk~l~ 352 (531)
||+|+.+++ .+++.+|||+|++.+|..||||||+ |+|...+... ........+...+...+ ...+
T Consensus 1 s~~el~~~l-~~~~~~liD~R~~~~~~~~hI~ga~--------~i~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~ 65 (113)
T PF00581_consen 1 SPEELKEML-ENESVLLIDVRSPEEYERGHIPGAV--------NIPFPSLDPD--EPSLSEDKLDEFLKELG----KKID 65 (113)
T ss_dssp -HHHHHHHH-TTTTEEEEEESSHHHHHHSBETTEE--------EEEGGGGSSS--SSBCHHHHHHHHHHHHT----HGST
T ss_pred CHHHHHhhh-hCCCeEEEEeCCHHHHHcCCCCCCc--------cccccccccc--ccccccccccccccccc----cccc
Confidence 689999999 6789999999999999999999999 8887554110 00111122222222222 2346
Q ss_pred CCcEEEEEeCCCcHHHHHHHH-----HHHccCCceEEecchHHHHHHc
Q 009581 353 DRSKVIVMDADGTRSKGIARS-----LRKLGVMRAFLVQGGFQSWVKE 395 (531)
Q Consensus 353 kd~~IVVyC~sG~RS~~AA~~-----L~~lGf~nV~~L~GG~~aW~~a 395 (531)
++++||+||.+|.++..++.. |..+||++|++|+|||.+|.++
T Consensus 66 ~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 66 KDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp TTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred ccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence 888999999999988887776 8999999999999999999864
No 28
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.71 E-value=2.1e-17 Score=139.37 Aligned_cols=89 Identities=22% Similarity=0.288 Sum_probs=76.5
Q ss_pred cCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhccc
Q 009581 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIV 351 (531)
Q Consensus 272 ISp~El~elL~~~~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk~l 351 (531)
++|+++.+++. ++.++||+|++++|..||||||+ |+|..++...... +
T Consensus 1 ~~~~e~~~~~~--~~~~iiD~R~~~~~~~~hipgA~--------~ip~~~~~~~~~~----------------------~ 48 (90)
T cd01524 1 VQWHELDNYRA--DGVTLIDVRTPQEFEKGHIKGAI--------NIPLDELRDRLNE----------------------L 48 (90)
T ss_pred CCHHHHHHHhc--CCCEEEECCCHHHHhcCCCCCCE--------eCCHHHHHHHHHh----------------------c
Confidence 47889988873 67799999999999999999999 9997665433221 2
Q ss_pred CCCcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHH
Q 009581 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (531)
Q Consensus 352 ~kd~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~ 393 (531)
+++++||+||++|.++..+++.|+..|| ++++|+||+.+|+
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 4788999999999999999999999999 8999999999996
No 29
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.71 E-value=2.3e-17 Score=152.70 Aligned_cols=99 Identities=17% Similarity=0.287 Sum_probs=81.6
Q ss_pred HHHHHhCCCCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCcE
Q 009581 277 TLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSK 356 (531)
Q Consensus 277 l~elL~~~~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk~l~kd~~ 356 (531)
+.+++..+.+.+|||||++.+|+.||||||+ ++|..++...+.. ++++++
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi--------~~~~~~l~~~l~~----------------------l~~~~~ 51 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAW--------WVLRAQLAQALEK----------------------LPAAER 51 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCce--------eCCHHHHHHHHHh----------------------cCCCCC
Confidence 3445555556899999999999999999999 8776544332221 246789
Q ss_pred EEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHHHcCCceeccccc
Q 009581 357 VIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSE 405 (531)
Q Consensus 357 IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~aGLPV~~~~p~ 405 (531)
|||||.+|.+|..+++.|+..||++|++|+||+.+|+++|+|++...+.
T Consensus 52 vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~aW~~~g~pl~~~~~~ 100 (145)
T cd01535 52 YVLTCGSSLLARFAAADLAALTVKPVFVLEGGTAAWIAAGLPVESGETR 100 (145)
T ss_pred EEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHHHHHHCCCCcccCCCC
Confidence 9999999999999999999999999999999999999999999876433
No 30
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.70 E-value=3.3e-17 Score=148.22 Aligned_cols=116 Identities=22% Similarity=0.245 Sum_probs=91.8
Q ss_pred CCCCccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHh
Q 009581 267 GYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIR 346 (531)
Q Consensus 267 g~~~~ISp~El~elL~~~~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~ 346 (531)
.....++.+++++++. .++.++||||+|+||..||||.++ |||+...... ..+++++++.+ .+..
T Consensus 20 ~~~~sv~~~qvk~L~~-~~~~~llDVRepeEfk~gh~~~si--------NiPy~~~~~~--~~l~~~eF~kq----vg~~ 84 (136)
T KOG1530|consen 20 SNPQSVSVEQVKNLLQ-HPDVVLLDVREPEEFKQGHIPASI--------NIPYMSRPGA--GALKNPEFLKQ----VGSS 84 (136)
T ss_pred CCcEEEEHHHHHHHhc-CCCEEEEeecCHHHhhccCCcceE--------eccccccccc--cccCCHHHHHH----hccc
Confidence 4456789999999984 456999999999999999999999 9997533222 12344444433 2221
Q ss_pred hhcccCCCcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHHHcCCcee
Q 009581 347 NLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIK 400 (531)
Q Consensus 347 ~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~aGLPV~ 400 (531)
..+.|++||++|++|.||..|...|..+||+||.++.|||.+|...++|..
T Consensus 85 ---kp~~d~eiIf~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 85 ---KPPHDKEIIFGCASGVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred ---CCCCCCcEEEEeccCcchhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 234677999999999999999999999999999999999999999988764
No 31
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.70 E-value=5.9e-17 Score=180.63 Aligned_cols=121 Identities=18% Similarity=0.213 Sum_probs=102.5
Q ss_pred CccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCccccccccccccccCccccc---chhhhhhcCchhhHHHHHHHHHh
Q 009581 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVG---GSVKKLLRGGRELDDTLTAAVIR 346 (531)
Q Consensus 270 ~~ISp~El~elL~~~~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~---~~~~~Llk~p~eL~~~L~algI~ 346 (531)
..|+++++.+++. +++.+|||+|++++|..||||||+ ++|+.... .....++++++++++.|.++||+
T Consensus 9 ~lIs~~eL~~~l~-~~~vvIIDvR~~~eY~~GHIPGAv--------~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~ 79 (610)
T PRK09629 9 LVIEPNDLLERLD-APELILVDLTSSARYEAGHIRGAR--------FVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHN 79 (610)
T ss_pred ceecHHHHHHHhc-CCCEEEEECCChHHHHhCCCCCcE--------EcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCC
Confidence 4689999999994 567999999999999999999999 77754321 11234567778899999999985
Q ss_pred hhcccCCCcEEEEEeCCC-cHHHHHHHHHHHccCCceEEecchHHHHHHcCCceeccccc
Q 009581 347 NLKIVQDRSKVIVMDADG-TRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSE 405 (531)
Q Consensus 347 ~Lk~l~kd~~IVVyC~sG-~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~aGLPV~~~~p~ 405 (531)
++++||+||++| .++.+++|.|+.+||++|++|+||+.+|..+|+|+++..+.
T Consensus 80 ------~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~~ 133 (610)
T PRK09629 80 ------PDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDVPP 133 (610)
T ss_pred ------CCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCCCC
Confidence 899999999977 48889999999999999999999999999999999887554
No 32
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.70 E-value=6.9e-17 Score=167.19 Aligned_cols=120 Identities=18% Similarity=0.292 Sum_probs=100.8
Q ss_pred CccCHHHHHHHHhCCCCcEEEEeC--------C-hhhhhhcCCccccccccccccccCcccccch---hhhhhcCchhhH
Q 009581 270 GDLSPKSTLELLRGKENAVLIDVR--------H-EDLRERDGIPDLRRGARFRYASVYLPEVGGS---VKKLLRGGRELD 337 (531)
Q Consensus 270 ~~ISp~El~elL~~~~~avLIDVR--------s-~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~---~~~Llk~p~eL~ 337 (531)
..|+++++.+++. +++.+|||+| + ..+|..||||||+ ++|+.++... ...++++++.|+
T Consensus 22 ~lvs~~~L~~~l~-~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi--------~i~~~~~~~~~~~~~~~lp~~~~~~ 92 (320)
T PLN02723 22 PVVSVDWLHANLR-EPDVKVLDASWYMPDEQRNPIQEYQVAHIPGAL--------FFDLDGISDRTTDLPHMLPSEEAFA 92 (320)
T ss_pred ceecHHHHHHHhc-CCCeEEEEeeccccCCCCchHHHHHhccCCCCe--------ecCHHHhcCCCCCcCCCCCCHHHHH
Confidence 3689999999984 4678999996 3 3789999999999 7776555432 345667788999
Q ss_pred HHHHHHHHhhhcccCCCcEEEEEeCCCc-HHHHHHHHHHHccCCceEEecchHHHHHHcCCceecccc
Q 009581 338 DTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (531)
Q Consensus 338 ~~L~algI~~Lk~l~kd~~IVVyC~sG~-RS~~AA~~L~~lGf~nV~~L~GG~~aW~~aGLPV~~~~p 404 (531)
+.|.++||. ++++|||||..|. .+.+++|.|+.+||++|++|+||+.+|.++|+|+++..+
T Consensus 93 ~~l~~~Gi~------~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~~ 154 (320)
T PLN02723 93 AAVSALGIE------NKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSAS 154 (320)
T ss_pred HHHHHcCCC------CCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCCC
Confidence 999999986 7899999998876 567889999999999999999999999999999988653
No 33
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.69 E-value=1.3e-16 Score=168.45 Aligned_cols=145 Identities=24% Similarity=0.305 Sum_probs=106.3
Q ss_pred CccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhc
Q 009581 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (531)
Q Consensus 270 ~~ISp~El~elL~~~~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk 349 (531)
..|+++++.+++. ++.+|||||+++||..||||||+ |+|+.++.....++.
T Consensus 3 ~~is~~el~~~l~--~~~~ivDvR~~~e~~~ghIpgAi--------~ip~~~l~~~~~~~~------------------- 53 (376)
T PRK08762 3 REISPAEARARAA--QGAVLIDVREAHERASGQAEGAL--------RIPRGFLELRIETHL------------------- 53 (376)
T ss_pred ceeCHHHHHHHHh--CCCEEEECCCHHHHhCCcCCCCE--------ECCHHHHHHHHhhhc-------------------
Confidence 4689999999885 45899999999999999999999 999766544332211
Q ss_pred ccCCCcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHHHcCCceeccccchhhh--hhhhc------HHHHHhh
Q 009581 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSETALT--ILNED------AEAILED 421 (531)
Q Consensus 350 ~l~kd~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~aGLPV~~~~p~~a~s--~l~~~------~~el~~~ 421 (531)
.+++++||+||++|.||..+++.|+.+||++|++|+|||.+|+..|+|++..+...... .+++. -.+--+.
T Consensus 54 -~~~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~s~~~~~~y~r~i~l~~~g~~~q~~ 132 (376)
T PRK08762 54 -PDRDREIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERPRLLTDEQDERYSRHLRLPEVGEEGQRR 132 (376)
T ss_pred -CCCCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcHHHHHhcCCccccccCCCHHHHHHHHHhcchhhcCHHHHHH
Confidence 14789999999999999999999999999999999999999999999998865444221 11110 0111223
Q ss_pred hcCCCceEEch---hHHHHHHHHhcC
Q 009581 422 INSSPVQFLGF---GVTIYRRVASYN 444 (531)
Q Consensus 422 i~p~pv~vlG~---g~T~~~rl~~~~ 444 (531)
++...+.++|. |..+...|...+
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~G 158 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAG 158 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcC
Confidence 44556888865 455544444444
No 34
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.69 E-value=6e-17 Score=145.26 Aligned_cols=99 Identities=22% Similarity=0.331 Sum_probs=79.0
Q ss_pred ccCHHHHHHHHhCC-----CCcEEEEeCChhhhhhcCCccccccccccccccCcc-cccchhhhhhcCchhhHHHHHHHH
Q 009581 271 DLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLP-EVGGSVKKLLRGGRELDDTLTAAV 344 (531)
Q Consensus 271 ~ISp~El~elL~~~-----~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~-eL~~~~~~Llk~p~eL~~~L~alg 344 (531)
.|+++++.+++.++ ++++|||||++.||..||||||+ |+|+. ++........ ..++
T Consensus 3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~--------~ip~~~~l~~~~~~~~----------~~~~ 64 (121)
T cd01530 3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAV--------NLSTKDELEEFFLDKP----------GVAS 64 (121)
T ss_pred ccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCE--------eCCcHHHHHHHHHHhh----------cccc
Confidence 58999999998643 46899999999999999999999 99975 3433211100 0011
Q ss_pred HhhhcccCCCcEEEEEeC-CCcHHHHHHHHHHHc------------cCCceEEecchHHHHH
Q 009581 345 IRNLKIVQDRSKVIVMDA-DGTRSKGIARSLRKL------------GVMRAFLVQGGFQSWV 393 (531)
Q Consensus 345 I~~Lk~l~kd~~IVVyC~-sG~RS~~AA~~L~~l------------Gf~nV~~L~GG~~aW~ 393 (531)
++++++||+||+ +|.||..+++.|+.+ ||++||+|+|||.+|.
T Consensus 65 ------~~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 65 ------KKKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred ------cCCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 258999999997 999999999999985 9999999999999984
No 35
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.69 E-value=5.8e-17 Score=148.80 Aligned_cols=108 Identities=22% Similarity=0.232 Sum_probs=90.1
Q ss_pred cCHHHHHHHHhC---CCCcEEEEeCCh--------hhhhh------------cCCccccccccccccccCcccccc---h
Q 009581 272 LSPKSTLELLRG---KENAVLIDVRHE--------DLRER------------DGIPDLRRGARFRYASVYLPEVGG---S 325 (531)
Q Consensus 272 ISp~El~elL~~---~~~avLIDVRs~--------eEf~~------------GHIPGAi~a~~~~~~nIPl~eL~~---~ 325 (531)
++++++.+.+.+ +++.+|||+|.. ++|.. ||||||+ ++|+..+.. .
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv--------~~~~~~~~~~~~~ 72 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGAS--------FFDFEECLDEAGF 72 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCE--------eeCHHHhhCcCCC
Confidence 578888888852 467899999987 89988 9999999 777654422 2
Q ss_pred hhhhhcCchhhHHHHHHHHHhhhcccCCCcEEEEEeCC---CcHHHHHHHHHHHccCCceEEecchHHHHH
Q 009581 326 VKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD---GTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (531)
Q Consensus 326 ~~~Llk~p~eL~~~L~algI~~Lk~l~kd~~IVVyC~s---G~RS~~AA~~L~~lGf~nV~~L~GG~~aW~ 393 (531)
...++++++++++.|..+||+ ++++||+||.+ |.++.+++++|+.+||++|++|+||+.+|+
T Consensus 73 ~~~~~p~~~~~~~~~~~~GI~------~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 73 EESMEPSEAEFAAMFEAKGID------LDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred CCCCCCCHHHHHHHHHHcCCC------CCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 234566677999999999986 88999999986 779999999999999999999999999996
No 36
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.69 E-value=7.6e-17 Score=138.63 Aligned_cols=94 Identities=31% Similarity=0.478 Sum_probs=80.9
Q ss_pred HhCCCCcEEEEeCChhhhhhcCCcc-ccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCcEEEE
Q 009581 281 LRGKENAVLIDVRHEDLRERDGIPD-LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIV 359 (531)
Q Consensus 281 L~~~~~avLIDVRs~eEf~~GHIPG-Ai~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk~l~kd~~IVV 359 (531)
+...++.+|||||++.||+.+|||| ++ ++|+.++........ .+++++||+
T Consensus 15 ~~~~~~~~liDvR~~~e~~~~~i~~~~~--------~ip~~~~~~~~~~~~--------------------~~~~~~ivv 66 (110)
T COG0607 15 LLAGEDAVLLDVREPEEYERGHIPGAAI--------NIPLSELKAAENLLE--------------------LPDDDPIVV 66 (110)
T ss_pred hhccCCCEEEeccChhHhhhcCCCccee--------eeecccchhhhcccc--------------------cCCCCeEEE
Confidence 3345789999999999999999999 98 999888765433211 157999999
Q ss_pred EeCCCcHHHHHHHHHHHccCCceEEecchHHHHHHcCCceecc
Q 009581 360 MDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKEL 402 (531)
Q Consensus 360 yC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~aGLPV~~~ 402 (531)
||++|.||..++..|+.+||++++++.||+.+|...++|+...
T Consensus 67 ~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~~w~~~~~~~~~~ 109 (110)
T COG0607 67 YCASGVRSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVRG 109 (110)
T ss_pred EeCCCCChHHHHHHHHHcCCccccccCCcHHHHHhcCCCcccC
Confidence 9999999999999999999998889999999999999998763
No 37
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.68 E-value=1e-16 Score=136.50 Aligned_cols=87 Identities=24% Similarity=0.287 Sum_probs=70.0
Q ss_pred CCCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCcEEEEEeCC
Q 009581 284 KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD 363 (531)
Q Consensus 284 ~~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk~l~kd~~IVVyC~s 363 (531)
+++.+|||||++.+|..+|||||+ |+|..++..... .++ .++ ..+++++||+||.+
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~--------~ip~~~~~~~~~-------~~~----~~~-----~~~~~~~ivv~c~~ 65 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKR--------SIPGAALVLRSQ-------ELQ----ALE-----APGRATRYVLTCDG 65 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcE--------eCCHHHhcCCHH-------HHH----Hhh-----cCCCCCCEEEEeCC
Confidence 467899999999999999999999 898655432211 111 111 12578999999999
Q ss_pred CcHHHHHHHHHHHccCCceEEecchHHHHHH
Q 009581 364 GTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (531)
Q Consensus 364 G~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~ 394 (531)
|.+|..+++.|+.+||++|++|+||+.+|.+
T Consensus 66 g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 96 (96)
T cd01529 66 SLLARFAAQELLALGGKPVALLDGGTSAWVA 96 (96)
T ss_pred hHHHHHHHHHHHHcCCCCEEEeCCCHHHhcC
Confidence 9999999999999999999999999999963
No 38
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.68 E-value=8.2e-17 Score=143.05 Aligned_cols=103 Identities=25% Similarity=0.333 Sum_probs=81.6
Q ss_pred cCHHHHHHHHhCCCCcEEEEeCChhhhh-hcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 009581 272 LSPKSTLELLRGKENAVLIDVRHEDLRE-RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (531)
Q Consensus 272 ISp~El~elL~~~~~avLIDVRs~eEf~-~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk~ 350 (531)
|+++++.+++.++++.+|||||++.||+ .||||||+ |+|+.++.... ++. .+...+...
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~--------~ip~~~~~~~~----~~~-~~~~~l~~~------- 60 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAV--------HVAWQVYPDME----INP-NFLAELEEK------- 60 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCce--------ecchhhccccc----cCH-HHHHHHHhh-------
Confidence 6889999999755678999999999999 99999999 89876554211 011 111112111
Q ss_pred cCCCcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHHH
Q 009581 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (531)
Q Consensus 351 l~kd~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~ 394 (531)
.+++++||+||++|.||..+++.|+.+||++++.|.|||.+|+.
T Consensus 61 ~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~~~~ 104 (117)
T cd01522 61 VGKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLD 104 (117)
T ss_pred CCCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceecCCC
Confidence 14789999999999999999999999999999999999999975
No 39
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.67 E-value=9.9e-17 Score=136.32 Aligned_cols=84 Identities=25% Similarity=0.346 Sum_probs=68.3
Q ss_pred CCCCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCcEEEEEeC
Q 009581 283 GKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDA 362 (531)
Q Consensus 283 ~~~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk~l~kd~~IVVyC~ 362 (531)
++++++|||||+++||..+|||||+ |+|+..+.......+ .+++++||+||.
T Consensus 7 ~~~~~~liDvR~~~e~~~~hi~ga~--------~ip~~~~~~~~~~~~--------------------~~~~~~ivl~c~ 58 (92)
T cd01532 7 AREEIALIDVREEDPFAQSHPLWAA--------NLPLSRLELDAWVRI--------------------PRRDTPIVVYGE 58 (92)
T ss_pred cCCCeEEEECCCHHHHhhCCcccCe--------eCCHHHHHhhhHhhC--------------------CCCCCeEEEEeC
Confidence 4567899999999999999999999 999765432110000 125889999999
Q ss_pred CCcH--HHHHHHHHHHccCCceEEecchHHHHHH
Q 009581 363 DGTR--SKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (531)
Q Consensus 363 sG~R--S~~AA~~L~~lGf~nV~~L~GG~~aW~~ 394 (531)
+|.+ |..+++.|+.+||++|++|+||+.+|++
T Consensus 59 ~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 59 GGGEDLAPRAARRLSELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred CCCchHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence 9986 6889999999999999999999999963
No 40
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.64 E-value=5.6e-16 Score=136.12 Aligned_cols=101 Identities=18% Similarity=0.271 Sum_probs=79.1
Q ss_pred CccCHHHHHHHHhCC-CCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhh
Q 009581 270 GDLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL 348 (531)
Q Consensus 270 ~~ISp~El~elL~~~-~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~L 348 (531)
..|+++++.+++..+ ++.+|||||++ ||..||||||+ ++|+.++......+. ...++
T Consensus 2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~--------~ip~~~l~~~~~~~~----------~~~~~--- 59 (113)
T cd01531 2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSW--------HYPSTRFKAQLNQLV----------QLLSG--- 59 (113)
T ss_pred CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCE--------ecCHHHHhhCHHHHH----------HHHhc---
Confidence 358999999998654 45789999999 99999999999 999876654333221 11111
Q ss_pred cccCCCcEEEEEeC-CCcHHHHHHHHHHH--------ccCCceEEecchHHHHHHc
Q 009581 349 KIVQDRSKVIVMDA-DGTRSKGIARSLRK--------LGVMRAFLVQGGFQSWVKE 395 (531)
Q Consensus 349 k~l~kd~~IVVyC~-sG~RS~~AA~~L~~--------lGf~nV~~L~GG~~aW~~a 395 (531)
+++++||+||. +|.|+..+++.|.+ .||++|++|.||+.+|++.
T Consensus 60 ---~~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 60 ---SKKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred ---CCCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 36789999998 67899999887754 4999999999999999864
No 41
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.64 E-value=2.9e-16 Score=158.38 Aligned_cols=107 Identities=13% Similarity=0.163 Sum_probs=85.7
Q ss_pred hCCCCCccCHHHHHHHHhCC-----CCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHH
Q 009581 265 YGGYSGDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDT 339 (531)
Q Consensus 265 ~~g~~~~ISp~El~elL~~~-----~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~ 339 (531)
..+....++++++.+++.+. ++.+|||||++.||+.||||||+ |+|+.+|.....++.. .
T Consensus 105 ~~~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAi--------niPl~~f~~~~~~l~~-------~ 169 (257)
T PRK05320 105 ELGRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGAL--------DYRIDKFTEFPEALAA-------H 169 (257)
T ss_pred ccCcCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCE--------eCChhHhhhhHHHHHh-------h
Confidence 33445679999999988542 34799999999999999999999 9998776543322210 0
Q ss_pred HHHHHHhhhcccCCCcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHHHc
Q 009581 340 LTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE 395 (531)
Q Consensus 340 L~algI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~a 395 (531)
+.. .++++|++||++|.||..|+..|++.||++|++|.||+.+|.+.
T Consensus 170 --------~~~-~kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 170 --------RAD-LAGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred --------hhh-cCCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence 001 26899999999999999999999999999999999999999874
No 42
>PRK01415 hypothetical protein; Validated
Probab=99.62 E-value=1.3e-15 Score=152.80 Aligned_cols=101 Identities=15% Similarity=0.235 Sum_probs=84.0
Q ss_pred CccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhc
Q 009581 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (531)
Q Consensus 270 ~~ISp~El~elL~~~~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk 349 (531)
..|+|+++.+++. +++++|||||++.||..||||||+ |+|+..|+....++ +. ..
T Consensus 112 ~~i~p~e~~~ll~-~~~~vvIDVRn~~E~~~Ghi~gAi--------nip~~~f~e~~~~~-------~~---------~~ 166 (247)
T PRK01415 112 EYIEPKDWDEFIT-KQDVIVIDTRNDYEVEVGTFKSAI--------NPNTKTFKQFPAWV-------QQ---------NQ 166 (247)
T ss_pred cccCHHHHHHHHh-CCCcEEEECCCHHHHhcCCcCCCC--------CCChHHHhhhHHHH-------hh---------hh
Confidence 3699999999995 578999999999999999999999 99977665321111 00 01
Q ss_pred ccCCCcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHHHc
Q 009581 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE 395 (531)
Q Consensus 350 ~l~kd~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~a 395 (531)
.++++++|++||.+|.||..|+..|+++||++||+|.||+.+|.+.
T Consensus 167 ~~~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~ 212 (247)
T PRK01415 167 ELLKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQYLED 212 (247)
T ss_pred hhcCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHHHHHh
Confidence 2358899999999999999999999999999999999999999875
No 43
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.61 E-value=1.4e-15 Score=133.01 Aligned_cols=81 Identities=19% Similarity=0.202 Sum_probs=68.8
Q ss_pred CCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCcEEEEEeCCC
Q 009581 285 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADG 364 (531)
Q Consensus 285 ~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk~l~kd~~IVVyC~sG 364 (531)
....+||+|+++||..||||||+ |+|+.++...+.++. .+++++||+||++|
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAi--------nip~~~l~~~l~~~~--------------------~~~~~~vvlyC~~G 68 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAI--------NIPLKEIKEHIATAV--------------------PDKNDTVKLYCNAG 68 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCE--------ECCHHHHHHHHHHhC--------------------CCCCCeEEEEeCCC
Confidence 45689999999999999999999 999876654443321 13678999999999
Q ss_pred cHHHHHHHHHHHccCCceEEecchHHHHHH
Q 009581 365 TRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (531)
Q Consensus 365 ~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~ 394 (531)
.||..++..|+.+||++++++ ||+.+|.-
T Consensus 69 ~rS~~aa~~L~~~G~~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 69 RQSGMAKDILLDMGYTHAENA-GGIKDIAM 97 (101)
T ss_pred HHHHHHHHHHHHcCCCeEEec-CCHHHhhh
Confidence 999999999999999999985 99999964
No 44
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.61 E-value=3e-15 Score=152.78 Aligned_cols=127 Identities=21% Similarity=0.226 Sum_probs=103.6
Q ss_pred ccCHHHHHHHHhCC----CCcEEEEeCCh--hhhhhcCCccccccccccccccCcccccch---hhhhhcCchhhHHHHH
Q 009581 271 DLSPKSTLELLRGK----ENAVLIDVRHE--DLRERDGIPDLRRGARFRYASVYLPEVGGS---VKKLLRGGRELDDTLT 341 (531)
Q Consensus 271 ~ISp~El~elL~~~----~~avLIDVRs~--eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~---~~~Llk~p~eL~~~L~ 341 (531)
-++++.+.+.+... .++.+++++.. ++|..+|||||+ .+++...... ...++++++++.+.+.
T Consensus 12 lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv--------~~d~~~~~~~~~~~~~~lp~~e~fa~~~~ 83 (285)
T COG2897 12 LVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAV--------FFDWEADLSDPVPLPHMLPSPEQFAKLLG 83 (285)
T ss_pred EEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCE--------ecCHHHhhcCCCCCCCCCCCHHHHHHHHH
Confidence 47888888877321 25677777666 899999999999 6665543322 2578899999999999
Q ss_pred HHHHhhhcccCCCcEEEEEeCCC-cHHHHHHHHHHHccCCceEEecchHHHHHHcCCceeccccchhhhhh
Q 009581 342 AAVIRNLKIVQDRSKVIVMDADG-TRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSETALTIL 411 (531)
Q Consensus 342 algI~~Lk~l~kd~~IVVyC~sG-~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~aGLPV~~~~p~~a~s~l 411 (531)
++||+ .|++||+|+..+ ..|.+++|+|+.+|+++|++|+||+.+|+++|+|++..++.++...+
T Consensus 84 ~~GI~------~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~~~~~~f 148 (285)
T COG2897 84 ELGIR------NDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPPEPPPTTF 148 (285)
T ss_pred HcCCC------CCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCCCCCCccc
Confidence 99996 899999999654 48899999999999999999999999999999999998777655543
No 45
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.61 E-value=1.6e-15 Score=133.46 Aligned_cols=99 Identities=18% Similarity=0.302 Sum_probs=75.1
Q ss_pred CccCHHHHHHHHhCC-----CCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHH
Q 009581 270 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV 344 (531)
Q Consensus 270 ~~ISp~El~elL~~~-----~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~alg 344 (531)
..|+++++.+++.++ ++.+|||||++ ||..||||||+ |+|+.++..++.++++ ...
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi--------~ip~~~~~~~~~~~~~----------~~~ 62 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSI--------NLPAQSCYQTLPQVYA----------LFS 62 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCce--------ecchhHHHHHHHHHHH----------Hhh
Confidence 358999999999654 46899999999 99999999999 9998776554433221 111
Q ss_pred HhhhcccCCCcEEEEEeCC-CcHHHHHHHHHH----HccC--CceEEecchHHHHH
Q 009581 345 IRNLKIVQDRSKVIVMDAD-GTRSKGIARSLR----KLGV--MRAFLVQGGFQSWV 393 (531)
Q Consensus 345 I~~Lk~l~kd~~IVVyC~s-G~RS~~AA~~L~----~lGf--~nV~~L~GG~~aW~ 393 (531)
. .+.++||+||.+ |.||..++..|. +.|| .++++|+||+.+|.
T Consensus 63 ~------~~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 63 L------AGVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred h------cCCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 0 246789999987 678888776544 3475 78999999999995
No 46
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.60 E-value=1.3e-15 Score=125.14 Aligned_cols=87 Identities=30% Similarity=0.453 Sum_probs=71.6
Q ss_pred HHHHhCCCCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCcEE
Q 009581 278 LELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKV 357 (531)
Q Consensus 278 ~elL~~~~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk~l~kd~~I 357 (531)
.+++. .++.+|||+|++.+|..+|||||+ ++|...+..... .. ..+++++|
T Consensus 3 ~~~~~-~~~~~iiD~R~~~~~~~~~i~ga~--------~~~~~~~~~~~~--------------~~------~~~~~~~v 53 (89)
T cd00158 3 KELLD-DEDAVLLDVREPEEYAAGHIPGAI--------NIPLSELEERAA--------------LL------ELDKDKPI 53 (89)
T ss_pred HHHhc-CCCeEEEECCCHHHHhccccCCCE--------ecchHHHhhHHH--------------hh------ccCCCCeE
Confidence 34443 468899999999999999999999 888765443210 01 12578999
Q ss_pred EEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHH
Q 009581 358 IVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (531)
Q Consensus 358 VVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~ 393 (531)
|+||..|.++..+++.|+.+||+++++|.||+.+|+
T Consensus 54 v~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 54 VVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred EEEeCCCchHHHHHHHHHHhCcccEEEecCChhhcC
Confidence 999999999999999999999999999999999994
No 47
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.58 E-value=3.7e-15 Score=131.11 Aligned_cols=81 Identities=19% Similarity=0.227 Sum_probs=67.8
Q ss_pred CCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCcEEEEEeCCC
Q 009581 285 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADG 364 (531)
Q Consensus 285 ~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk~l~kd~~IVVyC~sG 364 (531)
..-+|||+|+++||+.+|||||+ |+|+.++...+..+. .+++++||+||++|
T Consensus 19 ~~~~lIDvR~~~ef~~ghIpGAi--------niP~~~l~~~l~~l~--------------------~~~~~~IVlyC~~G 70 (104)
T PRK10287 19 AAEHWIDVRVPEQYQQEHVQGAI--------NIPLKEVKERIATAV--------------------PDKNDTVKLYCNAG 70 (104)
T ss_pred CCCEEEECCCHHHHhcCCCCccE--------ECCHHHHHHHHHhcC--------------------CCCCCeEEEEeCCC
Confidence 45589999999999999999999 999866544333221 13678999999999
Q ss_pred cHHHHHHHHHHHccCCceEEecchHHHHHH
Q 009581 365 TRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (531)
Q Consensus 365 ~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~ 394 (531)
.||..+++.|.++||+++++ .||+.+|.-
T Consensus 71 ~rS~~aa~~L~~~G~~~v~~-~GG~~~~~~ 99 (104)
T PRK10287 71 RQSGQAKEILSEMGYTHAEN-AGGLKDIAM 99 (104)
T ss_pred hHHHHHHHHHHHcCCCeEEe-cCCHHHHhh
Confidence 99999999999999999987 699999974
No 48
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.56 E-value=7.8e-15 Score=155.90 Aligned_cols=101 Identities=24% Similarity=0.327 Sum_probs=84.9
Q ss_pred CccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhc
Q 009581 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (531)
Q Consensus 270 ~~ISp~El~elL~~~~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk 349 (531)
..++++++.++++.+++.+|||||+++||..+|||||+ |+|+.++.... . +.
T Consensus 287 ~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAi--------nip~~~l~~~~-~-------------------~~ 338 (392)
T PRK07878 287 STITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQ--------LIPKSEILSGE-A-------------------LA 338 (392)
T ss_pred CccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCE--------EcChHHhcchh-H-------------------Hh
Confidence 36899999999865556799999999999999999999 99987654310 0 01
Q ss_pred ccCCCcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHHHcCCc
Q 009581 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLR 398 (531)
Q Consensus 350 ~l~kd~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~aGLP 398 (531)
.++++++||+||++|.||..+++.|++.||++|++|+||+.+|++...|
T Consensus 339 ~l~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~ 387 (392)
T PRK07878 339 KLPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQVDP 387 (392)
T ss_pred hCCCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence 2358899999999999999999999999999999999999999987544
No 49
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.55 E-value=1.1e-14 Score=150.85 Aligned_cols=101 Identities=18% Similarity=0.247 Sum_probs=83.6
Q ss_pred CccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhc
Q 009581 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (531)
Q Consensus 270 ~~ISp~El~elL~~~~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk 349 (531)
..++++++.+++. +++.+|||||++.||+.||||||+ |+|+.+|.+....+ .+ .+
T Consensus 112 ~~is~~el~~~l~-~~~~vlIDVR~~~E~~~GhI~GAi--------~ip~~~~~~~~~~l-------~~---~~------ 166 (314)
T PRK00142 112 TYLKPKEVNELLD-DPDVVFIDMRNDYEYEIGHFENAI--------EPDIETFREFPPWV-------EE---NL------ 166 (314)
T ss_pred cccCHHHHHHHhc-CCCeEEEECCCHHHHhcCcCCCCE--------eCCHHHhhhhHHHH-------HH---hc------
Confidence 4699999999884 467899999999999999999999 99987765432211 10 01
Q ss_pred ccCCCcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHHHc
Q 009581 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE 395 (531)
Q Consensus 350 ~l~kd~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~a 395 (531)
...++++||+||.+|.||..++..|+.+||++|++|+||+.+|.+.
T Consensus 167 ~~~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 167 DPLKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIITYGED 212 (314)
T ss_pred CCCCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence 1247899999999999999999999999999999999999999874
No 50
>PRK07411 hypothetical protein; Validated
Probab=99.52 E-value=3.3e-14 Score=151.09 Aligned_cols=104 Identities=25% Similarity=0.316 Sum_probs=83.4
Q ss_pred CccCHHHHHHHHhCCC-CcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhh
Q 009581 270 GDLSPKSTLELLRGKE-NAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL 348 (531)
Q Consensus 270 ~~ISp~El~elL~~~~-~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~L 348 (531)
..|+++++.++++.+. +.+|||||+++||+.||||||+ |+|+.++..... .+. +
T Consensus 282 ~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAi--------niP~~~l~~~~~-----~~~------------l 336 (390)
T PRK07411 282 PEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSV--------LVPLPDIENGPG-----VEK------------V 336 (390)
T ss_pred CccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCE--------EccHHHhhcccc-----hHH------------H
Confidence 4699999999886443 5799999999999999999999 999876643210 001 1
Q ss_pred cccCCCcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHHHcCCce
Q 009581 349 KIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (531)
Q Consensus 349 k~l~kd~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~aGLPV 399 (531)
+.++++++||+||++|.||..+++.|+.+||+ ++.|.||+.+|+++..|-
T Consensus 337 ~~l~~d~~IVvyC~~G~RS~~aa~~L~~~G~~-~~~l~GG~~~W~~~~~p~ 386 (390)
T PRK07411 337 KELLNGHRLIAHCKMGGRSAKALGILKEAGIE-GTNVKGGITAWSREVDPS 386 (390)
T ss_pred hhcCCCCeEEEECCCCHHHHHHHHHHHHcCCC-eEEecchHHHHHHhcCCC
Confidence 12357899999999999999999999999997 568999999999875543
No 51
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.45 E-value=1.4e-13 Score=144.66 Aligned_cols=172 Identities=22% Similarity=0.247 Sum_probs=108.4
Q ss_pred CCcccCCCchhHh--hhhhhhcccceeeecccchHHHHHHHHHHHhHhcCcCC--CCCeeehhhhHhHHHHHHH------
Q 009581 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSATLWI------ 258 (531)
Q Consensus 189 G~~~~~lp~~v~k--l~~~~e~~tg~ilg~~G~~aq~v~~~~egv~k~lgv~~--~dpVv~~~~~~G~~~~l~~------ 258 (531)
++|.+|+.|+... -...| ...| |+||.-+.... .++.|.+.-.+|+.. .+.++++.++-...-.+-+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~c-~~~g-v~g~~~~~~g~-~~a~e~ik~l~g~~~~l~~~l~~~d~~~~~~~~~~~~~~~~~ 242 (355)
T PRK05597 166 GPIYEDLFPTPPPPGSVPSC-SQAG-VLGPVVGVVGS-AMAMEALKLITGVGTPLIGKLGYYDSLDGTWEYIPVVGNPAV 242 (355)
T ss_pred CCCHHHhCCCCCCccCCCCc-cccC-cchhHHHHHHH-HHHHHHHHHHhCCCCcCcCeEEEEECCCCeEEEEeccCCCCC
Confidence 3588888765432 11123 2345 78887777764 335666665566521 2233332221110000000
Q ss_pred ----HHHH-H-Hh-CCCCCccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhc
Q 009581 259 ----FYWW-W-TY-GGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLR 331 (531)
Q Consensus 259 ----~~~~-~-~~-~g~~~~ISp~El~elL~~~~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk 331 (531)
.+.. . .. .+....++++++.++. ++.+|||||+++||+.+|||||+ |+|+.++.......
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~IIDVR~~~ef~~ghIpgAi--------nip~~~l~~~~~~~-- 309 (355)
T PRK05597 243 LERVRGSTPVHGISGGFGEVLDVPRVSALP---DGVTLIDVREPSEFAAYSIPGAH--------NVPLSAIREGANPP-- 309 (355)
T ss_pred ccccccccccccccCCcccccCHHHHHhcc---CCCEEEECCCHHHHccCcCCCCE--------EeCHHHhhhccccc--
Confidence 0000 0 00 0112246777777543 46799999999999999999999 99987654322110
Q ss_pred CchhhHHHHHHHHHhhhcccCCCcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHHH
Q 009581 332 GGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (531)
Q Consensus 332 ~p~eL~~~L~algI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~ 394 (531)
.++++++||+||++|.||..+++.|+.+||++|++|+||+.+|.+
T Consensus 310 ------------------~~~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 310 ------------------SVSAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred ------------------cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 124788999999999999999999999999999999999999975
No 52
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.44 E-value=4.6e-13 Score=120.73 Aligned_cols=106 Identities=21% Similarity=0.276 Sum_probs=75.0
Q ss_pred ccCHHHHHHHHhCC-CCcEEEEeCChhhhhhcCCccccccccccccccCcccccchh--------hhhhcCchhhHHHHH
Q 009581 271 DLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSV--------KKLLRGGRELDDTLT 341 (531)
Q Consensus 271 ~ISp~El~elL~~~-~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~--------~~Llk~p~eL~~~L~ 341 (531)
.|+++++.+++... ++.+|||+|++.+|..+|||||+ ++|+..+..+. ..++..++.. +.+
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l- 70 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAV--------NVCCPTILRRRLQGGKILLQQLLSCPEDR-DRL- 70 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcE--------ecChHHHHHHhhcccchhhhhhcCCHHHH-HHH-
Confidence 37899999999643 57899999999999999999999 88876432110 0112111111 111
Q ss_pred HHHHhhhcccCCCcEEEEEeCCCcH---------HHHHHHHHHH--ccCCceEEecchHHHHHH
Q 009581 342 AAVIRNLKIVQDRSKVIVMDADGTR---------SKGIARSLRK--LGVMRAFLVQGGFQSWVK 394 (531)
Q Consensus 342 algI~~Lk~l~kd~~IVVyC~sG~R---------S~~AA~~L~~--lGf~nV~~L~GG~~aW~~ 394 (531)
.. .++++|||||.++.+ +..+++.|.. .|+.+|++|+|||.+|++
T Consensus 71 -------~~-~~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~ 126 (132)
T cd01446 71 -------RR-GESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSS 126 (132)
T ss_pred -------hc-CCCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHh
Confidence 11 157899999988764 5666666766 367899999999999976
No 53
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.42 E-value=2.1e-13 Score=140.66 Aligned_cols=182 Identities=20% Similarity=0.229 Sum_probs=127.8
Q ss_pred eEccCCcccCCCchhHh--hhhhhhcccceeeecccchHHHHHHHHHHHhHhcCcC-CCCCeeehhhhHhHHHHHHHHHH
Q 009581 185 VYYYGTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFD-PNDPIVPFVVFLGTSATLWIFYW 261 (531)
Q Consensus 185 ~y~~G~~~~~lp~~v~k--l~~~~e~~tg~ilg~~G~~aq~v~~~~egv~k~lgv~-~~dpVv~~~~~~G~~~~l~~~~~ 261 (531)
.|--|+|++|++|+++. .+..|.+ .| ||||+.+... +.+++|.++-..++. +-+|-++ ++-|..+-+..+.+
T Consensus 200 ny~~GPCYRClFP~Ppp~~~vt~C~d-gG-VlGpv~GviG-~mQALE~iKli~~~~~~~s~~ll--lfdg~~~~~r~irl 274 (427)
T KOG2017|consen 200 NYNNGPCYRCLFPNPPPPEAVTNCAD-GG-VLGPVTGVIG-CMQALETIKLIAGIGESLSGRLL--LFDGLSGHFRTIRL 274 (427)
T ss_pred ecCCCceeeecCCCCcChHHhccccc-Cc-eeecchhhhh-HHHHHHHHHHHHccCccCCcceE--EEecccceeEEEEe
Confidence 45668999999999888 7778854 66 9999999998 577888888777652 2222222 11111110000000
Q ss_pred H----------------------------------HHhCCCCCccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCcccc
Q 009581 262 W----------------------------------WTYGGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLR 307 (531)
Q Consensus 262 ~----------------------------------~~~~g~~~~ISp~El~elL~~~~~avLIDVRs~eEf~~GHIPGAi 307 (531)
. .+.-.-..+|+..++++++++.+..+|||||++.||+-.|+|+|+
T Consensus 275 R~r~~~C~~Cg~n~tit~~~dYe~fCg~~~~~~~~l~lL~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~av 354 (427)
T KOG2017|consen 275 RSRRPKCAVCGKNPTITSLIDYELFCGSSATDKCPLKLLEPDERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAV 354 (427)
T ss_pred ccCCCCCcccCCCCccCcccchhcccCCccccccchhcCChhhcccHHHHHHHHhcCCCeEEEeccCcceEEEEeccccc
Confidence 0 000011236888999999987788999999999999999999999
Q ss_pred ccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCcEEEEEeCCCcHHHHHHHHHHHccC-CceEEec
Q 009581 308 RGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGV-MRAFLVQ 386 (531)
Q Consensus 308 ~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~lGf-~nV~~L~ 386 (531)
|||+.+++.+.++-.. ..+ -....+|+|+|+.|..|..|+|.|+...+ -.|+-+.
T Consensus 355 --------NIPL~~l~~~~~~~~~--~~~--------------~~~~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~vrDvi 410 (427)
T KOG2017|consen 355 --------NIPLKELRSRSGKKLQ--GDL--------------NTESKDIFVICRRGNDSQRAVRILREKFPDSSVRDVI 410 (427)
T ss_pred --------ccchhhhhhhhhhhhc--ccc--------------cccCCCEEEEeCCCCchHHHHHHHHhhCCchhhhhhh
Confidence 9999988765542110 000 02457799999999999999999997665 3677888
Q ss_pred chHHHHHHc
Q 009581 387 GGFQSWVKE 395 (531)
Q Consensus 387 GG~~aW~~a 395 (531)
||+.+|...
T Consensus 411 gGl~~w~~~ 419 (427)
T KOG2017|consen 411 GGLKAWAAK 419 (427)
T ss_pred hHHHHHHHh
Confidence 999999875
No 54
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.36 E-value=8.5e-13 Score=139.59 Aligned_cols=170 Identities=18% Similarity=0.217 Sum_probs=105.6
Q ss_pred CCcccCCCchhHh--hhhhhhcccceeeecccchHHHHHHHHHHHhHhcCcCC--CCCeeehhhhHhHHHHHHHHHHH--
Q 009581 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSATLWIFYWW-- 262 (531)
Q Consensus 189 G~~~~~lp~~v~k--l~~~~e~~tg~ilg~~G~~aq~v~~~~egv~k~lgv~~--~dpVv~~~~~~G~~~~l~~~~~~-- 262 (531)
++|..|++|+... .+..| ...| |+||..+.... .++.|.+.-.+|+.. ...++.+..+..... .+-|.
T Consensus 182 ~~~~~~l~~~~~~~~~~~~c-~~~g-vlg~~~~~ig~-~~a~eaik~l~g~g~~l~g~ll~~d~~~~~~~---~~~~~~~ 255 (370)
T PRK05600 182 GVGLRDLFPEQPSGDSIPDC-ATAG-VLGATTAVIGA-LMATEAIKFLTGIGDVQPGTVLSYDALTATTR---SFRVGAD 255 (370)
T ss_pred CCCcHhhCCCCCccccCCCC-ccCC-cchhHHHHHHH-HHHHHHHHHHhCCCCCCcCcEEEEECCCCEEE---EEEecCC
Confidence 4577777665321 11123 2234 78887777764 345666666667621 233443222111100 00000
Q ss_pred ------HHhC-CC-CCccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCc---cccccccccccccCcccccchhhhhhc
Q 009581 263 ------WTYG-GY-SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIP---DLRRGARFRYASVYLPEVGGSVKKLLR 331 (531)
Q Consensus 263 ------~~~~-g~-~~~ISp~El~elL~~~~~avLIDVRs~eEf~~GHIP---GAi~a~~~~~~nIPl~eL~~~~~~Llk 331 (531)
..+. .| ...++++++.+++.+ ++++|||||+++||+.+||| ||+ |||+.++......+
T Consensus 256 ~~c~~~~~~~~~~~~~~~~~~el~~~l~~-~~~~lIDVR~~~E~~~ghI~~~~gAi--------nIPl~~l~~~~~~~-- 324 (370)
T PRK05600 256 PARPLVTRLRPSYEAARTDTTSLIDATLN-GSATLLDVREPHEVLLKDLPEGGASL--------KLPLSAITDDADIL-- 324 (370)
T ss_pred CCCCccccccCcchhcccCHHHHHHHHhc-CCeEEEECCCHHHhhhccCCCCCccE--------eCcHHHhhcchhhh--
Confidence 0000 01 125789999998854 46799999999999999998 588 99988775421100
Q ss_pred CchhhHHHHHHHHHhhhcccCCCcEEEEEeCCCcHHHHHHHHHHHccCCc-eEEecchHH
Q 009581 332 GGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMR-AFLVQGGFQ 390 (531)
Q Consensus 332 ~p~eL~~~L~algI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~lGf~n-V~~L~GG~~ 390 (531)
..+..++++ +||+||++|.||..|+..|+++||++ |++|.|||.
T Consensus 325 --------------~~l~~~~~~-~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 325 --------------HALSPIDGD-NVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred --------------hhccccCCC-cEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 001112344 99999999999999999999999985 999999985
No 55
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.06 E-value=2e-10 Score=125.52 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=62.7
Q ss_pred CCcEEEEeCChhhhhhcCCcc----ccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCcEEEEE
Q 009581 285 ENAVLIDVRHEDLRERDGIPD----LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVM 360 (531)
Q Consensus 285 ~~avLIDVRs~eEf~~GHIPG----Ai~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk~l~kd~~IVVy 360 (531)
++.+|||||+++||+.+|||| |+ |+|+.++...... ++++++||+|
T Consensus 406 ~~~~lIDVR~~~E~~~~hI~g~~~~a~--------niP~~~l~~~~~~----------------------l~~~~~iivy 455 (482)
T PRK01269 406 PDDVIIDIRSPDEQEDKPLKLEGVEVK--------SLPFYKLSTQFGD----------------------LDQSKTYLLY 455 (482)
T ss_pred CCCEEEECCCHHHHhcCCCCCCCceEE--------ECCHHHHHHHHhh----------------------cCCCCeEEEE
Confidence 678999999999999999999 88 9998766543221 2578899999
Q ss_pred eCCCcHHHHHHHHHHHccCCceEEecc
Q 009581 361 DADGTRSKGIARSLRKLGVMRAFLVQG 387 (531)
Q Consensus 361 C~sG~RS~~AA~~L~~lGf~nV~~L~G 387 (531)
|++|.||..++..|+.+||+||++|.+
T Consensus 456 C~~G~rS~~aa~~L~~~G~~nv~~y~~ 482 (482)
T PRK01269 456 CDRGVMSRLQALYLREQGFSNVKVYRP 482 (482)
T ss_pred CCCCHHHHHHHHHHHHcCCccEEecCC
Confidence 999999999999999999999998753
No 56
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.99 E-value=1.1e-09 Score=111.16 Aligned_cols=120 Identities=19% Similarity=0.292 Sum_probs=95.8
Q ss_pred ccCHHHHHHHHhCCCCcEEEEeC---------ChhhhhhcCCccccccccccccccCccccc---chhhhhhcCchhhHH
Q 009581 271 DLSPKSTLELLRGKENAVLIDVR---------HEDLRERDGIPDLRRGARFRYASVYLPEVG---GSVKKLLRGGRELDD 338 (531)
Q Consensus 271 ~ISp~El~elL~~~~~avLIDVR---------s~eEf~~GHIPGAi~a~~~~~~nIPl~eL~---~~~~~Llk~p~eL~~ 338 (531)
-+++..+.+.+.+ .+.+|||.- ...||..-|||||. ++.++... .....+++.++.+++
T Consensus 6 iv~~~~v~~~~~~-~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~--------~fdld~~~~~s~~~~~~lp~~e~Fa~ 76 (286)
T KOG1529|consen 6 IVSVKWVMENLGN-HGLRILDASWYFPPLRRIAEFEFLERHIPGAS--------HFDLDIISYPSSPYRHMLPTAEHFAE 76 (286)
T ss_pred ccChHHHHHhCcC-CCeEEEeeeeecCchhhhhhhhhhhccCCCce--------eeeccccccCCCcccccCccHHHHHH
Confidence 4677777777743 678999983 35678888999998 44443332 234556677777888
Q ss_pred HHHHHHHhhhcccCCCcEEEEEeC--CCc-HHHHHHHHHHHccCCceEEecchHHHHHHcCCceeccccc
Q 009581 339 TLTAAVIRNLKIVQDRSKVIVMDA--DGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSE 405 (531)
Q Consensus 339 ~L~algI~~Lk~l~kd~~IVVyC~--sG~-RS~~AA~~L~~lGf~nV~~L~GG~~aW~~aGLPV~~~~p~ 405 (531)
-.+.+|+. +++.+|||++ .|+ .|.+++|+++..||++|+.|+||+.+|+++|+|+.+.++.
T Consensus 77 y~~~lGi~------n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~~~ 140 (286)
T KOG1529|consen 77 YASRLGVD------NGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSKVE 140 (286)
T ss_pred HHHhcCCC------CCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCcccccccc
Confidence 88888885 7889999999 777 7889999999999999999999999999999999988753
No 57
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=98.96 E-value=5.7e-10 Score=113.81 Aligned_cols=100 Identities=19% Similarity=0.256 Sum_probs=81.6
Q ss_pred ccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 009581 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (531)
Q Consensus 271 ~ISp~El~elL~~~~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk~ 350 (531)
-|+|+++.+++ .+++.++||+|...||+-||..||+ +.+...|++...++. +.+ .
T Consensus 114 yl~p~~wn~~l-~D~~~vviDtRN~YE~~iG~F~gAv--------~p~~~tFrefP~~v~-------~~~---------~ 168 (308)
T COG1054 114 YLSPKDWNELL-SDPDVVVIDTRNDYEVAIGHFEGAV--------EPDIETFREFPAWVE-------ENL---------D 168 (308)
T ss_pred ccCHHHHHHHh-cCCCeEEEEcCcceeEeeeeecCcc--------CCChhhhhhhHHHHH-------HHH---------H
Confidence 48999999999 4688999999999999999999999 777666665433321 101 1
Q ss_pred cCCCcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHHHc
Q 009581 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE 395 (531)
Q Consensus 351 l~kd~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~a 395 (531)
.-++++|+.||.+|.|-..+.-.|...||++||.|+||+-.+...
T Consensus 169 ~~~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e~ 213 (308)
T COG1054 169 LLKDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYLED 213 (308)
T ss_pred hccCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHHhhh
Confidence 125779999999999999999999999999999999999887653
No 58
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.76 E-value=1.5e-08 Score=103.01 Aligned_cols=94 Identities=21% Similarity=0.245 Sum_probs=81.3
Q ss_pred CCcEEEEeCChhhhh-----------hcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCC
Q 009581 285 ENAVLIDVRHEDLRE-----------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQD 353 (531)
Q Consensus 285 ~~avLIDVRs~eEf~-----------~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk~l~k 353 (531)
.+...+|.|+..+|. .||||||+ |+|+.++-..-+.+.+ +.++...+...|+. .
T Consensus 171 ~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~--------n~P~~~~~~~~g~~k~-~edl~~~f~~~~l~------~ 235 (286)
T KOG1529|consen 171 KNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAI--------NFPFDEVLDPDGFIKP-AEDLKHLFAQKGLK------L 235 (286)
T ss_pred ccceeeeccccccccccCCCCcccCcCccCCCcc--------cCChHHhcccccccCC-HHHHHHHHHhcCcc------c
Confidence 457899999999983 57999999 9999888766555544 78888888888875 6
Q ss_pred CcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHHH
Q 009581 354 RSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (531)
Q Consensus 354 d~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~ 394 (531)
++|+|+-|..|..+...+-.|.+.| .++.+|+|+|.+|..
T Consensus 236 ~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew~~ 275 (286)
T KOG1529|consen 236 SKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTEWAL 275 (286)
T ss_pred CCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHHHhh
Confidence 8999999999999999999999999 689999999999974
No 59
>COG2603 Predicted ATPase [General function prediction only]
Probab=98.55 E-value=1.8e-07 Score=95.35 Aligned_cols=170 Identities=22% Similarity=0.218 Sum_probs=109.7
Q ss_pred CCcEEEEeCChhhhhhcCCccccccccccccccCccccc--chhhhhhcC-ch---------hhHHHHHHHHHhhhcccC
Q 009581 285 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVG--GSVKKLLRG-GR---------ELDDTLTAAVIRNLKIVQ 352 (531)
Q Consensus 285 ~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~--~~~~~Llk~-p~---------eL~~~L~algI~~Lk~l~ 352 (531)
.+..|||||.|.||..|+.|+++ |.|+-.-. ..++..++. .. .++..+.+--+..-+.+.
T Consensus 14 ~~~~lid~rap~ef~~g~~~ia~--------nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f~ 85 (334)
T COG2603 14 ADTPLIDVRAPIEFENGAMPIAI--------NLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAFQ 85 (334)
T ss_pred cCCceeeccchHHHhcccchhhh--------ccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 56789999999999999999999 77742211 112222211 00 111111111111112234
Q ss_pred CCcEEEEEe-CCCcHHHHHHHHH-HHccCCceEEecchHHHHHHcCCceeccccchhhhhhhhcHHHHHhhhcCCCceEE
Q 009581 353 DRSKVIVMD-ADGTRSKGIARSL-RKLGVMRAFLVQGGFQSWVKEGLRIKELKSETALTILNEDAEAILEDINSSPVQFL 430 (531)
Q Consensus 353 kd~~IVVyC-~sG~RS~~AA~~L-~~lGf~nV~~L~GG~~aW~~aGLPV~~~~p~~a~s~l~~~~~el~~~i~p~pv~vl 430 (531)
.+.|+-++| ++|.||...+..| ...|++ +-.+.||+.+.+.- ...+.+..++..++.+.
T Consensus 86 e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalrt~------------------~~~a~~~~i~~k~~il~ 146 (334)
T COG2603 86 EENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALRTF------------------AIQATIKEIAQKDFILC 146 (334)
T ss_pred HhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHHHH------------------HHHHHHHHhccCCEEEe
Confidence 567777779 5677999999999 778885 55678999987642 12334455666677777
Q ss_pred c---hhHHHHHHHHhcCChhhHHHHHHHhhcccccccceeecccCccccCCCCCCCCCChhHHHHHHHHHHHh
Q 009581 431 G---FGVTIYRRVASYNDAEDFKQDVRLLLAPVRIGARAFSWAAGKLETNRPGLPTSPSSVDVQNRVLQAAAK 500 (531)
Q Consensus 431 G---~g~T~~~rl~~~~~~~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~gl~~~p~~~~~~~~~~~~~~~ 500 (531)
| +|+|.+ ++.|-.. +|+++++. |+|+.| | .=+-+-|+|++||+++--..-+
T Consensus 147 g~Tgcgkt~l--ve~lp~a----idlE~~a~---h~gssF----G------rt~~~q~~qkafE~~l~i~el~ 200 (334)
T COG2603 147 GCTGCGKTEL--VEQLPNA----IDLEGLAN---HRGSSF----G------RTLEPQPSQKAFENVLAIEELK 200 (334)
T ss_pred CCCCCcHHHH--HHhCCCc----cCcHhHHH---HHHHHH----H------HhcCcCccHHHHHHHHHHHHHH
Confidence 6 566654 4455444 79999999 999999 5 5678899999999986443333
No 60
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=2.1e-07 Score=96.41 Aligned_cols=104 Identities=23% Similarity=0.325 Sum_probs=73.4
Q ss_pred CCccCHHHHHHHHhCC-----CCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHH
Q 009581 269 SGDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAA 343 (531)
Q Consensus 269 ~~~ISp~El~elL~~~-----~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~al 343 (531)
.+.|+++.++.++++. ...+|||+|-|.||..|||+||+ ||+..+....... .++
T Consensus 155 ~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgav--------nl~~~~~~~~~f~-~~~----------- 214 (325)
T KOG3772|consen 155 LKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAV--------NLYSKELLQDFFL-LKD----------- 214 (325)
T ss_pred ccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccce--------ecccHhhhhhhhc-ccc-----------
Confidence 3579999999998642 23579999999999999999999 8875433221110 000
Q ss_pred HHhhhcccCCCcEEEEEeC-CCcHHHHHHHHHHH------------ccCCceEEecchHHHHHHc
Q 009581 344 VIRNLKIVQDRSKVIVMDA-DGTRSKGIARSLRK------------LGVMRAFLVQGGFQSWVKE 395 (531)
Q Consensus 344 gI~~Lk~l~kd~~IVVyC~-sG~RS~~AA~~L~~------------lGf~nV~~L~GG~~aW~~a 395 (531)
+. +...+...+|+||. +-.|...+|+.|+. +-|..+|+|+|||..|...
T Consensus 215 ~~---~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 215 GV---PSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred cc---ccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 00 00013457899996 45699999999983 4566899999999999764
No 61
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.36 E-value=9.2e-08 Score=102.13 Aligned_cols=111 Identities=18% Similarity=0.187 Sum_probs=89.2
Q ss_pred cccccccchhhhhhhhhccc------cchhhhhhhHHHHHhhccccccccCcccccccc---ccccccchhhhhhhcccc
Q 009581 91 SSMIKGENAVKSSLDTITSS------LTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVA 161 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~------~~~a~k~~r~~~d~~~~g~~~~~~~~~~~~~~~---~~~~~tgl~e~~~~~~~~ 161 (531)
..|||+|||... .+.+++. +..|.+|||.+|+|+.| ....+++........ ...++.|++|+.+++.|+
T Consensus 275 ~~IyA~GD~~~~-~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g-~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~ 352 (444)
T PRK09564 275 ENIYAAGDCATI-YNIVSNKNVYVPLATTANKLGRMVGENLAG-RHVSFKGTLGSACIKVLDLEAARTGLTEEEAKKLGI 352 (444)
T ss_pred CCEEEeeeEEEE-EeccCCCeeeccchHHHHHHHHHHHHHhcC-CCCCCCCcccceEEEECCEEEEEecCCHHHHHHCCC
Confidence 459999999987 6666553 77899999999999995 677788887776554 679999999999999999
Q ss_pred eehhhhhhhhcccceeccCCceeeEccCCcccCCCchhHhhhhhhhcccceeeecccchHHHHH
Q 009581 162 AVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVS 225 (531)
Q Consensus 162 ~~d~l~~~~~~~e~~~~~~~~~~~y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~ 225 (531)
++ +.......++..|++|.....+ |+ ++++++|+||| +|.++
T Consensus 353 ~~----------~~~~~~~~~~~~~~~~~~~~~~-----kl--v~~~~~~~ilG-----~~~~g 394 (444)
T PRK09564 353 DY----------KTVFIKDKNHTNYYPGQEDLYV-----KL--IYEADTKVILG-----GQIIG 394 (444)
T ss_pred Ce----------EEEEEecCCCCCcCCCCceEEE-----EE--EEECCCCeEEe-----EEEEc
Confidence 88 4443434556668889888888 88 88888999999 77666
No 62
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.12 E-value=6.4e-07 Score=95.48 Aligned_cols=111 Identities=20% Similarity=0.205 Sum_probs=87.4
Q ss_pred cccccccchhhhhhhhhccc------cchhhhhhhHHHHHhhccccccccCcccccccc---ccccccchhhhhhhcccc
Q 009581 91 SSMIKGENAVKSSLDTITSS------LTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVA 161 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~------~~~a~k~~r~~~d~~~~g~~~~~~~~~~~~~~~---~~~~~tgl~e~~~~~~~~ 161 (531)
..||++|||... .+..++. +..|.+|||.+|+|+.| ....+++........ ...++.|++|..+++.|+
T Consensus 262 ~~Vya~GD~~~~-~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g-~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~ 339 (427)
T TIGR03385 262 PNIYAAGDVAES-HNIITKKPAWVPLAWGANKMGRIAGENIAG-NDIEFKGVLGTNITKFFDLTIASTGVTENEAKKLNI 339 (427)
T ss_pred CCEEEeeeeEEe-eeccCCCceeeechHHHHHHHHHHHHHhcC-CCCCCCCcceeeEEEEcCeEEEEecCCHHHHHHCCC
Confidence 469999999987 5555443 78899999999999995 567787766555444 678999999999999999
Q ss_pred eehhhhhhhhcccceeccCCceeeEccCCcccCCCchhHhhhhhhhcccceeeecccchHHHHH
Q 009581 162 AVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVS 225 (531)
Q Consensus 162 ~~d~l~~~~~~~e~~~~~~~~~~~y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~ 225 (531)
+| +.......++..+++|.....+ |+ +++..+++||| +|.++
T Consensus 340 ~~----------~~~~~~~~~~~~~~~~~~~g~~-----kl--i~~~~~~~ilG-----~~~~g 381 (427)
T TIGR03385 340 DY----------KTVFVKAKTHANYYPGNSPLHL-----KL--IYEKDTRRILG-----AQAVG 381 (427)
T ss_pred Ce----------EEEEEecCCCCCcCCCCceEEE-----EE--EEECCCCeEEE-----EEEEc
Confidence 98 5555544555666678887777 88 88888999999 77666
No 63
>PRK07846 mycothione reductase; Reviewed
Probab=98.03 E-value=1.2e-06 Score=94.76 Aligned_cols=109 Identities=9% Similarity=-0.006 Sum_probs=83.7
Q ss_pred ccccccccchhhhhhhhhccccchhhhhhhHHHHHhhcccc--ccccCcccccccc-ccccccchhhhhhhcccceehhh
Q 009581 90 SSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVF--SSIDQTGGSAGSK-LTNFSTDLKEASSKATVAAVDVL 166 (531)
Q Consensus 90 ~~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~--~~~~~~~~~~~~~-~~~~~tgl~e~~~~~~~~~~d~l 166 (531)
...|||+|||... . ..+..|++|||.+++|++++.. ....+.+.+.+.. ...+++||+|+.+++.|++|
T Consensus 292 ~p~IyA~GD~~~~-~----~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~if~~p~ia~vGlte~~a~~~g~~~--- 363 (451)
T PRK07846 292 AEGVFALGDVSSP-Y----QLKHVANHEARVVQHNLLHPDDLIASDHRFVPAAVFTHPQIASVGLTENEARAAGLDI--- 363 (451)
T ss_pred CCCEEEEeecCCC-c----cChhHHHHHHHHHHHHHcCCCCccccCCCCCCeEEECCCCcEeEeCCHHHHHhcCCCE---
Confidence 3469999999875 2 2366899999999999995422 2234566777665 78999999999999999999
Q ss_pred hhhhhcccceeccCCceeeEc-cCCcccCCCchhHhhhhhhhcccceeeecccchHHHHH
Q 009581 167 RNTIVALEESMTNGASFVVYY-YGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVS 225 (531)
Q Consensus 167 ~~~~~~~e~~~~~~~~~~~y~-~G~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~ 225 (531)
.+....-.++..|+ ++.....+ |+ +++.++++||| +|.++
T Consensus 364 -------~~~~~~~~~~~~~~~~~~~~g~~-----Kl--i~d~~~~~ilG-----~~~~g 404 (451)
T PRK07846 364 -------TVKVQNYGDVAYGWAMEDTTGFV-----KL--IADRDTGRLLG-----AHIIG 404 (451)
T ss_pred -------EEEEEecCcchhhhhCCCCceEE-----EE--EEECCCCEEEE-----EEEEC
Confidence 66665555555544 67777788 88 89889999999 77666
No 64
>PRK14727 putative mercuric reductase; Provisional
Probab=98.03 E-value=1.2e-06 Score=95.30 Aligned_cols=107 Identities=12% Similarity=-0.011 Sum_probs=84.1
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhccccccccCcccccccc--ccccccchhhhhhhcccceehhhhh
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK--LTNFSTDLKEASSKATVAAVDVLRN 168 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~~~~~~~~~~~~~~--~~~~~tgl~e~~~~~~~~~~d~l~~ 168 (531)
..|||+|||+.. . ..+.-|..|||.++++++| ....+++.....+.- ...+++||+|..+++.|++|
T Consensus 314 ~~IyA~GD~~~~-~----~~~~~A~~~G~~aa~~i~g-~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~----- 382 (479)
T PRK14727 314 PDIYAAGDCSDL-P----QFVYVAAAAGSRAGINMTG-GNATLDLSAMPAVIFTDPQVATVGLSEAKAHLSGIET----- 382 (479)
T ss_pred CCEEEeeecCCc-c----hhhhHHHHHHHHHHHHHcC-CCcccccccCCcEEEecCceeeeeCCHHHHHHcCCce-----
Confidence 469999999976 3 2355688899999999994 666788877765554 67999999999999999998
Q ss_pred hhhcccceeccCCceeeEccC-CcccCCCchhHhhhhhhhcccceeeecccchHHHHH
Q 009581 169 TIVALEESMTNGASFVVYYYG-TTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVS 225 (531)
Q Consensus 169 ~~~~~e~~~~~~~~~~~y~~G-~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~ 225 (531)
.+......++..|+++ .....+ |+ +++.++|+||| +|.++
T Consensus 383 -----~~~~~~~~~~~~~~~~~~~~g~~-----Kl--i~d~~~~~ilG-----~~~~g 423 (479)
T PRK14727 383 -----ISRVLTMENVPRALANFETDGFI-----KL--VAEEGTRKLIG-----AQILA 423 (479)
T ss_pred -----EEEEEEcccCchhhhcCCCCeEE-----EE--EEECCCCEEEE-----EEEEC
Confidence 5566666666667766 445666 88 88888999999 77666
No 65
>PRK06370 mercuric reductase; Validated
Probab=98.01 E-value=1.3e-06 Score=94.36 Aligned_cols=108 Identities=6% Similarity=-0.049 Sum_probs=79.4
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhccccccccCcccccccc--ccccccchhhhhhhcccceehhhhh
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK--LTNFSTDLKEASSKATVAAVDVLRN 168 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~~~~~~~~~~~~~~--~~~~~tgl~e~~~~~~~~~~d~l~~ 168 (531)
..|||+|||... .. .+..|.+|||.+++|++++....++...-..+.- ...+++||+|+.+++.|++|
T Consensus 302 ~~IyAiGD~~~~-~~----~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~ia~vG~te~~a~~~g~~~----- 371 (463)
T PRK06370 302 PGIYAAGDCNGR-GA----FTHTAYNDARIVAANLLDGGRRKVSDRIVPYATYTDPPLARVGMTEAEARKSGRRV----- 371 (463)
T ss_pred CCEEEeeecCCC-cc----cHHHHHHHHHHHHHHHhCCCCCCcccccCCeEEEcCCCcEeeeCCHHHHHHcCCCe-----
Confidence 569999999765 32 3568999999999999964455566543333332 56899999999999999998
Q ss_pred hhhcccceeccCCceee-EccCCcccCCCchhHhhhhhhhcccceeeecccchHHHHH
Q 009581 169 TIVALEESMTNGASFVV-YYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVS 225 (531)
Q Consensus 169 ~~~~~e~~~~~~~~~~~-y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~ 225 (531)
+.....-.+... +++|.....+ |+ +++.++++||| +|.++
T Consensus 372 -----~~~~~~~~~~~~~~~~~~~~g~~-----kl--i~d~~~~~ilG-----~~~~g 412 (463)
T PRK06370 372 -----LVGTRPMTRVGRAVEKGETQGFM-----KV--VVDADTDRILG-----ATILG 412 (463)
T ss_pred -----EEEEEecCcchhHHhcCCCCEEE-----EE--EEECCCCEEEE-----EEEEC
Confidence 555443333333 3477777777 88 89888999999 77666
No 66
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.99 E-value=1.4e-06 Score=93.90 Aligned_cols=108 Identities=7% Similarity=-0.011 Sum_probs=80.5
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhcccccccc-Ccccccccc-ccccccchhhhhhhccc-ceehhhh
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSID-QTGGSAGSK-LTNFSTDLKEASSKATV-AAVDVLR 167 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~~~~~-~~~~~~~~~-~~~~~tgl~e~~~~~~~-~~~d~l~ 167 (531)
..|||+|||... . ..+..|++|||.+++|++|+....++ +++.+.+.. ...+++|++|+.+++.+ +++
T Consensus 294 ~~IyA~GD~~~~-~----~l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~if~~p~ia~vG~te~~a~~~~~~~~---- 364 (446)
T TIGR01424 294 PSIYAVGDVTDR-I----NLTPVAIMEATCFANTEFGNNPTKFDHDLIATAVFSQPPLGTVGLTEEEAREKFTGDI---- 364 (446)
T ss_pred CCEEEeeccCCC-c----cchhHHHHHHHHHHHHHhcCCCCccCcCCCCeEEeCCchhEEEECCHHHHHhhcCCCE----
Confidence 569999999753 1 24778999999999999964444455 678888877 48999999999999984 776
Q ss_pred hhhhcccceecc-CCceeeEccCCcccCCCchhHhhhhhhhcccceeeecccchHHHHH
Q 009581 168 NTIVALEESMTN-GASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVS 225 (531)
Q Consensus 168 ~~~~~~e~~~~~-~~~~~~y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~ 225 (531)
...... ...+..|++|.....+ |+ +++.++|+||| +|.++
T Consensus 365 ------~~~~~~~~~~~~~~~~~~~~g~~-----kl--i~d~~~~~ilG-----~~~~g 405 (446)
T TIGR01424 365 ------LVYRAGFRPMKNTFSGRQEKTLM-----KL--VVDEKDDKVLG-----AHMVG 405 (446)
T ss_pred ------EEEEEecCchHhHhhcCCCceEE-----EE--EEeCCCCEEEE-----EEEEC
Confidence 222111 1233456677777777 88 88889999999 77666
No 67
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.97 E-value=1.8e-06 Score=92.92 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=79.5
Q ss_pred cccccccchhhhhhhhhccc------cchhhhhhhHHHHHhhccccccccCcccccccc---ccccccchhhhhhhcccc
Q 009581 91 SSMIKGENAVKSSLDTITSS------LTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVA 161 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~------~~~a~k~~r~~~d~~~~g~~~~~~~~~~~~~~~---~~~~~tgl~e~~~~~~~~ 161 (531)
..|||+|||... .+..++. +..|.+||+.+++|++|.....+.+........ ...+++||+|+.+++.+
T Consensus 270 ~~IyA~GD~~~~-~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~~- 347 (438)
T PRK13512 270 PNIYAIGDIITS-HYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFD- 347 (438)
T ss_pred CCEEEeeeeEEe-eeccCCCceecccchHHHHHHHHHHHHhcCCCccccCCcccceEEEEcCceEEeecCCHHHHccCC-
Confidence 569999999975 4433432 667899999999999953234465666665555 67999999999888764
Q ss_pred eehhhhhhhhcccceeccCCceeeEccCCcccCCCchhHhhhhhhhcccceeeecccchHHHHH
Q 009581 162 AVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVS 225 (531)
Q Consensus 162 ~~d~l~~~~~~~e~~~~~~~~~~~y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~ 225 (531)
| +.......++..|++|.....+ |+ +++.++++||| +|.++
T Consensus 348 -~----------~~~~~~~~~~~~~~~~~~~g~~-----kl--v~d~~~~~ilG-----a~~~g 388 (438)
T PRK13512 348 -Y----------KMVEVTQGAHANYYPGNSPLHL-----RV--YYDTSNRKILR-----AAAVG 388 (438)
T ss_pred -c----------EEEEEecCCcCCCcCCCceEEE-----EE--EEECCCCeEEE-----EEEEc
Confidence 3 2223334445566678777777 88 88888999999 87666
No 68
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.93 E-value=2.4e-06 Score=92.96 Aligned_cols=107 Identities=8% Similarity=-0.080 Sum_probs=80.2
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhccccccccCcccccccc--ccccccchhhhhhhcccceehhhhh
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK--LTNFSTDLKEASSKATVAAVDVLRN 168 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~~~~~~~~~~~~~~--~~~~~tgl~e~~~~~~~~~~d~l~~ 168 (531)
..|||+|||+.. . ..+..|.+|||.++++++| ....++......+.- ...+++||+|+.+++.|++|
T Consensus 305 p~VyAiGDv~~~-~----~la~~A~~eG~~aa~~i~g-~~~~~~~~~~p~~~~~~p~ia~vGlte~ea~~~g~~~----- 373 (471)
T PRK06467 305 PHIFAIGDIVGQ-P----MLAHKGVHEGHVAAEVIAG-KKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEEGIEY----- 373 (471)
T ss_pred CCEEEehhhcCC-c----ccHHHHHHHHHHHHHHHcC-CCCCCCCCCCCeEEECCCceeEEECCHHHHHhcCCCe-----
Confidence 459999999854 1 2377899999999999994 666777766665553 56899999999999999998
Q ss_pred hhhcccceeccCCce-eeEccCCcccCCCchhHhhhhhhhcccceeeecccchHHHHH
Q 009581 169 TIVALEESMTNGASF-VVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVS 225 (531)
Q Consensus 169 ~~~~~e~~~~~~~~~-~~y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~ 225 (531)
+.....-.+. -.+++|.....+ |+ +++.++++||| +|.++
T Consensus 374 -----~~~~~~~~~~~~~~~~~~~~g~~-----kl--i~d~~t~~ilG-----~~~vg 414 (471)
T PRK06467 374 -----ETATFPWAASGRAIASDCADGMT-----KL--IFDKETHRVLG-----GAIVG 414 (471)
T ss_pred -----EEEEEecCcchhhhhCCCCceEE-----EE--EEECCCCeEEE-----EEEEC
Confidence 4444432221 123467777777 88 88888999999 77666
No 69
>PRK13748 putative mercuric reductase; Provisional
Probab=97.88 E-value=3.5e-06 Score=92.99 Aligned_cols=107 Identities=11% Similarity=0.024 Sum_probs=82.0
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhccccccccCcccccccc--ccccccchhhhhhhcccceehhhhh
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK--LTNFSTDLKEASSKATVAAVDVLRN 168 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~~~~~~~~~~~~~~--~~~~~tgl~e~~~~~~~~~~d~l~~ 168 (531)
..|||+|||... . ..+..|..|||.++.+++| ....+++.....+.- ...+++||+|+.+++.|++|
T Consensus 396 ~~IyA~GD~~~~-~----~~~~~A~~~g~~aa~~i~g-~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~----- 464 (561)
T PRK13748 396 PHIYAAGDCTDQ-P----QFVYVAAAAGTRAAINMTG-GDAALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIET----- 464 (561)
T ss_pred CCEEEeeecCCC-c----cchhHHHHHHHHHHHHHcC-CCcccCCCCCCeEEEccCCceeeeCCHHHHHHcCCCe-----
Confidence 469999999865 2 3356789999999999995 566788777665544 66899999999999999988
Q ss_pred hhhcccceeccCCceeeEccC-CcccCCCchhHhhhhhhhcccceeeecccchHHHHH
Q 009581 169 TIVALEESMTNGASFVVYYYG-TTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVS 225 (531)
Q Consensus 169 ~~~~~e~~~~~~~~~~~y~~G-~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~ 225 (531)
......-.++..|+++ .....+ |+ +++.++++||| +|.++
T Consensus 465 -----~~~~~~~~~~~~~~~~~~~~g~~-----kl--i~d~~~~~ilG-----~~~~g 505 (561)
T PRK13748 465 -----DSRTLTLDNVPRALANFDTRGFI-----KL--VIEEGSGRLIG-----VQAVA 505 (561)
T ss_pred -----EEEEEecccCchhhhcCCCCeEE-----EE--EEECCCCEEEE-----EEEEC
Confidence 5555555566666665 345566 78 88888999999 77665
No 70
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.80 E-value=5.9e-06 Score=89.45 Aligned_cols=107 Identities=9% Similarity=-0.018 Sum_probs=77.1
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhcccc-cccc-Ccccccccc-ccccccchhhhhhhcccceehhhh
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVF-SSID-QTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLR 167 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~-~~~~-~~~~~~~~~-~~~~~tgl~e~~~~~~~~~~d~l~ 167 (531)
..|||+|||... . .-+..|++|||.+++|++++.. ..++ +.+.+++.- ...+++||+|+.+++.|++|
T Consensus 296 ~~IyA~GD~~~~-~----~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i~t~p~ia~vGlte~ea~~~g~~~---- 366 (452)
T TIGR03452 296 RGVWALGDVSSP-Y----QLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIATVGLTEQEAREAGHDI---- 366 (452)
T ss_pred CCEEEeecccCc-c----cChhHHHHHHHHHHHHhcCCCCcccCCCCCCCeEEECCCCeeeeeCCHHHHHhcCCCe----
Confidence 359999999875 2 2256799999999999995322 1333 566666653 77999999999999999988
Q ss_pred hhhhcccceeccCCceeeE--ccCCcccCCCchhHhhhhhhhcccceeeecccchHHHHH
Q 009581 168 NTIVALEESMTNGASFVVY--YYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVS 225 (531)
Q Consensus 168 ~~~~~~e~~~~~~~~~~~y--~~G~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~ 225 (531)
+.... +.+...| +.+.....+ |+ +++.++++||| +|.++
T Consensus 367 ------~~~~~-~~~~~~~~~~~~~~~g~~-----Kl--v~d~~t~~ilG-----~~~vg 407 (452)
T TIGR03452 367 ------TVKIQ-NYGDVAYGWAMEDTTGFC-----KL--IADRDTGKLLG-----AHIIG 407 (452)
T ss_pred ------EEEEe-cCCchhhHhhcCCCCeEE-----EE--EEECCCCEEEE-----EEEEC
Confidence 33322 2222333 346666667 88 88889999999 77666
No 71
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.77 E-value=5.9e-06 Score=89.23 Aligned_cols=107 Identities=13% Similarity=-0.000 Sum_probs=78.4
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhccccccccCcccccccc--ccccccchhhhhhhcccceehhhhh
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK--LTNFSTDLKEASSKATVAAVDVLRN 168 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~~~~~~~~~~~~~~--~~~~~tgl~e~~~~~~~~~~d~l~~ 168 (531)
..|||+|||+.. . ..+..|.+||+.+|+|++++....++...-..+.. ...+++||+|+.+++.|++|
T Consensus 297 ~~VyAiGD~~~~-~----~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~----- 366 (463)
T TIGR02053 297 PGIYAAGDVTGG-L----QLEYVAAKEGVVAAENALGGANAKLDLLVIPRVVFTDPAVASVGLTEAEAQKAGIEC----- 366 (463)
T ss_pred CCEEEeeecCCC-c----ccHhHHHHHHHHHHHHhcCCCCCccCcCCCCeEEeccCceEEEeCCHHHHHhcCCCe-----
Confidence 469999999875 2 24788999999999999953355666655444333 77999999999999999988
Q ss_pred hhhcccceeccCC--ceeeEccCCcccCCCchhHhhhhhhhcccceeeecccchHHHHH
Q 009581 169 TIVALEESMTNGA--SFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVS 225 (531)
Q Consensus 169 ~~~~~e~~~~~~~--~~~~y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~ 225 (531)
........ ++..| +|.....+ |+ +++.++++||| +|.++
T Consensus 367 -----~~~~~~~~~~~~~~~-~~~~~g~~-----kl--i~d~~~~~ilG-----~~~~g 407 (463)
T TIGR02053 367 -----DCRTLPLTNVPRARI-NRDTRGFI-----KL--VAEPGTGKVLG-----VQVVA 407 (463)
T ss_pred -----EEEEEecccchHHHh-cCCCcEEE-----EE--EEECCCCEEEE-----EEEEC
Confidence 44433322 23333 46666777 88 88888999999 77665
No 72
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.77 E-value=9.2e-06 Score=87.49 Aligned_cols=106 Identities=9% Similarity=-0.004 Sum_probs=77.6
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhccccc-cccCcccccccc-ccccccchhhhhhhcccceehhhhh
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFS-SIDQTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRN 168 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~~-~~~~~~~~~~~~-~~~~~tgl~e~~~~~~~~~~d~l~~ 168 (531)
..|||+|||... . ..+..|.+||+.+|.++.| ... ...+.+.+.+.. ...+++|++|+.+++.|++|
T Consensus 303 ~~IyAiGD~~~~-~----~~~~~A~~~g~~aa~~i~g-~~~~~~~~~~p~~i~~~p~ia~vG~te~~a~~~g~~~----- 371 (461)
T PRK05249 303 PHIYAVGDVIGF-P----SLASASMDQGRIAAQHAVG-EATAHLIEDIPTGIYTIPEISSVGKTEQELTAAKVPY----- 371 (461)
T ss_pred CCEEEeeecCCC-c----ccHhHHHHHHHHHHHHHcC-CCcccccCCCCeEEECCCcceEecCCHHHHHHcCCCe-----
Confidence 569999999753 1 2367899999999999995 433 334556666655 57899999999999999988
Q ss_pred hhhcccceec--cCCceeeEccCCcccCCCchhHhhhhhhhcccceeeecccchHHHHH
Q 009581 169 TIVALEESMT--NGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVS 225 (531)
Q Consensus 169 ~~~~~e~~~~--~~~~~~~y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~ 225 (531)
+.... ....+.. ++|.....+ |+ ++++++++||| +|.++
T Consensus 372 -----~~~~~~~~~~~~~~-~~~~~~g~~-----kl--v~~~~~~~ilG-----~~~~g 412 (461)
T PRK05249 372 -----EVGRARFKELARAQ-IAGDNVGML-----KI--LFHRETLEILG-----VHCFG 412 (461)
T ss_pred -----EEEEEcccccccee-ecCCCCcEE-----EE--EEECCCCEEEE-----EEEEC
Confidence 33332 2223333 447777777 88 88888999999 77665
No 73
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.71 E-value=8.5e-06 Score=87.88 Aligned_cols=105 Identities=14% Similarity=0.088 Sum_probs=79.2
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhccccccccCcccccccc---ccccccchhhhhhhcccceehhhh
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLR 167 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~~~~~~~~~~~~~~---~~~~~tgl~e~~~~~~~~~~d~l~ 167 (531)
..|||+|||... . ..+..|.+|||.+|+|+++ ....++ .......+ ...+++|++|..+++.|++|
T Consensus 302 ~~VyAiGD~~~~-~----~~~~~A~~~g~~aa~ni~~-~~~~~~-~~~~~~~~~~~~~~a~vG~te~~a~~~g~~~---- 370 (462)
T PRK06416 302 PNIYAIGDIVGG-P----MLAHKASAEGIIAAEAIAG-NPHPID-YRGIPAVTYTHPEVASVGLTEAKAKEEGFDV---- 370 (462)
T ss_pred CCEEEeeecCCC-c----chHHHHHHHHHHHHHHHcC-CCCCCC-CCCCCeEEECCCceEEEeCCHHHHHhcCCCe----
Confidence 569999999863 1 2477899999999999995 555565 45555555 67899999999999999998
Q ss_pred hhhhcccceec--cCCceeeEccCCcccCCCchhHhhhhhhhcccceeeecccchHHHHH
Q 009581 168 NTIVALEESMT--NGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVS 225 (531)
Q Consensus 168 ~~~~~~e~~~~--~~~~~~~y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~ 225 (531)
+.... ...++.. +++.....+ |+ +++.++|+||| +|.++
T Consensus 371 ------~~~~~~~~~~~~~~-~~~~~~g~~-----kl--i~~~~~~~ilG-----~~~~g 411 (462)
T PRK06416 371 ------KVVKFPFAGNGKAL-ALGETDGFV-----KL--IFDKKDGEVLG-----AHMVG 411 (462)
T ss_pred ------EEEEEecCcChHhH-hcCCCceEE-----EE--EEECCCCEEEE-----EEEEC
Confidence 44433 2334444 357777777 88 88888999999 88766
No 74
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.71 E-value=9.9e-06 Score=86.95 Aligned_cols=107 Identities=9% Similarity=0.026 Sum_probs=75.4
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhccccccccCcccccccc---ccccccchhhhhhhcccceehhhh
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLR 167 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~~~~~~~~~~~~~~---~~~~~tgl~e~~~~~~~~~~d~l~ 167 (531)
..|||+|||... . ..+.-|..|||.+++|++|+......+........ ...+++||+|+.+++.|++|
T Consensus 285 ~~IyA~GD~~~~-~----~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~---- 355 (441)
T PRK08010 285 DNIWAMGDVTGG-L----QFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARESGADI---- 355 (441)
T ss_pred CCEEEeeecCCC-c----cchhHHHHHHHHHHHHHcCCCCcccCccCCCCEEEECCCCceeeeCCHHHHHHcCCCe----
Confidence 569999999875 3 33667889999999999953233334444444433 67999999999999999998
Q ss_pred hhhhcccceec--cCCceeeEccCCcccCCCchhHhhhhhhhcccceeeecccchHHHHH
Q 009581 168 NTIVALEESMT--NGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVS 225 (531)
Q Consensus 168 ~~~~~~e~~~~--~~~~~~~y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~ 225 (531)
+.... ...++..|+++ ....+ |+ +++.++|+||| +|.++
T Consensus 356 ------~~~~~~~~~~~~~~~~~~-~~g~~-----kl--i~d~~~~~ilG-----~~~~g 396 (441)
T PRK08010 356 ------QVVTLPVAAIPRARVMND-TRGVL-----KA--IVDNKTQRILG-----ASLLC 396 (441)
T ss_pred ------EEEEEecCcChhhhhcCC-CceEE-----EE--EEECCCCEEEE-----EEEEC
Confidence 44443 23344444444 34456 88 78888999999 88766
No 75
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.70 E-value=7.5e-06 Score=93.07 Aligned_cols=118 Identities=13% Similarity=0.035 Sum_probs=75.4
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhccccccccC---------cccccccc-----ccccccchhhhhh
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQ---------TGGSAGSK-----LTNFSTDLKEASS 156 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~~~~~~---------~~~~~~~~-----~~~~~tgl~e~~~ 156 (531)
..|||+|||.-. . --+..|.+||+.++++++|+....+.+ .....+-. ...|++||+|+.+
T Consensus 463 ~~IYAiGDv~g~--~---~La~~A~~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~ift~PeiA~VGlTE~eA 537 (659)
T PTZ00153 463 DNIFCIGDANGK--Q---MLAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTTPELAFIGLTEKEA 537 (659)
T ss_pred CCEEEEEecCCC--c---cCHHHHHHHHHHHHHHHcCCCccccccccccccccccccCcCCEEEECcCceEEeeCCHHHH
Confidence 369999999633 1 126789999999999999532111111 11122222 4588999999999
Q ss_pred hcccc--eehhhhhhhhccccee-------ccCCceeeEccCC------cccCCCchhHhhhhhhhcccceeeecccchH
Q 009581 157 KATVA--AVDVLRNTIVALEESM-------TNGASFVVYYYGT------TKESLPPEIRDALNLYEDRAVKLWRPVGSAL 221 (531)
Q Consensus 157 ~~~~~--~~d~l~~~~~~~e~~~-------~~~~~~~~y~~G~------~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~a 221 (531)
++.++ .+++-+..+.+....+ -...-+..||||. ....+ |+ +++.++++||| +
T Consensus 538 ~~~g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~~~G~v-----Kl--i~d~~t~rILG-----a 605 (659)
T PTZ00153 538 KELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMV-----KI--VYLKDTKEILG-----M 605 (659)
T ss_pred HhcCCCcceEEEEEEecccchhhhccccccccccccccccccccccccCCceEE-----EE--EEECCCCeEEE-----E
Confidence 99884 3433333333222222 2223456899998 45556 88 88889999999 7
Q ss_pred HHHH
Q 009581 222 QQVS 225 (531)
Q Consensus 222 q~v~ 225 (531)
|.++
T Consensus 606 ~ivG 609 (659)
T PTZ00153 606 FIVG 609 (659)
T ss_pred EEEC
Confidence 7665
No 76
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.69 E-value=1e-05 Score=87.69 Aligned_cols=106 Identities=7% Similarity=-0.042 Sum_probs=74.3
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhcccccc-ccCcccccccc---ccccccchhhhhhhcccceehhh
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSS-IDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVL 166 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~~~-~~~~~~~~~~~---~~~~~tgl~e~~~~~~~~~~d~l 166 (531)
..|||+|||... -..+..|.+|||.||+|++| .... +.......... ...+++||+|+.+++.|++|
T Consensus 304 p~IyAiGD~~~~-----~~l~~~A~~~g~~aa~~i~g-~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~--- 374 (466)
T PRK07818 304 PHIYAIGDVTAK-----LQLAHVAEAQGVVAAETIAG-AETLELGDYRMMPRATFCQPQVASFGLTEEQAREEGYDV--- 374 (466)
T ss_pred CCEEEEeecCCC-----cccHhHHHHHHHHHHHHHcC-CCCCccCccCCCCeEEECCCCeEEEeCCHHHHHhCCCcE---
Confidence 468999999753 13478899999999999995 4322 21222222222 56999999999999999988
Q ss_pred hhhhhcccceecc--CCceeeEccCCcccCCCchhHhhhhhhhcccceeeecccchHHHHH
Q 009581 167 RNTIVALEESMTN--GASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVS 225 (531)
Q Consensus 167 ~~~~~~~e~~~~~--~~~~~~y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~ 225 (531)
...... ..++..| +|.....+ |+ +++.++|+||| +|.++
T Consensus 375 -------~~~~~~~~~~~~~~~-~~~~~g~~-----Kl--v~~~~~~~ilG-----~~~vg 415 (466)
T PRK07818 375 -------KVAKFPFTANGKAHG-LGDPTGFV-----KL--VADAKYGELLG-----GHLIG 415 (466)
T ss_pred -------EEEEEECCccchhhh-cCCCCeEE-----EE--EEECCCCeEEE-----EEEEC
Confidence 333332 3334444 46666777 88 78889999999 77666
No 77
>PLN02507 glutathione reductase
Probab=97.68 E-value=1.2e-05 Score=88.28 Aligned_cols=106 Identities=8% Similarity=-0.063 Sum_probs=71.3
Q ss_pred ccccccchhhhhhhhhccccchhhhhhhHHHHHhhccccccccCc--ccccccc-ccccccchhhhhhhcc-cceehhhh
Q 009581 92 SMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQT--GGSAGSK-LTNFSTDLKEASSKAT-VAAVDVLR 167 (531)
Q Consensus 92 ~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~~~~~~~--~~~~~~~-~~~~~tgl~e~~~~~~-~~~~d~l~ 167 (531)
.|||+|||... .. .+..|++|||.+++|++++ ...+.+. +...+.. ...+++||+|+.+++. ++.+
T Consensus 332 ~IyAiGDv~~~-~~----l~~~A~~qg~~aa~ni~g~-~~~~~~~~~~p~~if~~p~ia~vGlte~ea~~~~~~~~---- 401 (499)
T PLN02507 332 SIWAIGDVTNR-IN----LTPVALMEGTCFAKTVFGG-QPTKPDYENVACAVFCIPPLSVVGLSEEEAVEQAKGDI---- 401 (499)
T ss_pred CEEEeeEcCCC-Cc----cHHHHHHHHHHHHHHHcCC-CCCcCCCCCCCeEEECCCccEEEeCCHHHHHhccCCCE----
Confidence 49999999854 22 3679999999999999964 3323222 2344444 3689999999999987 6666
Q ss_pred hhhhcccceeccCCceeeEccC-CcccCCCchhHhhhhhhhcccceeeecccchHHHHH
Q 009581 168 NTIVALEESMTNGASFVVYYYG-TTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVS 225 (531)
Q Consensus 168 ~~~~~~e~~~~~~~~~~~y~~G-~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~ 225 (531)
......-.+...|+++ ..+..+ |+ +++.++++||| +|.++
T Consensus 402 ------~~~~~~~~~~~~~~~~~~~~g~~-----Kl--i~d~~t~~ilG-----~~~vg 442 (499)
T PLN02507 402 ------LVFTSSFNPMKNTISGRQEKTVM-----KL--IVDAETDKVLG-----ASMCG 442 (499)
T ss_pred ------EEEEeecCccccccccCCCCEEE-----EE--EEECCCCEEEE-----EEEEC
Confidence 2222222222335555 344556 88 88888999999 88766
No 78
>PRK14694 putative mercuric reductase; Provisional
Probab=97.63 E-value=1.4e-05 Score=86.82 Aligned_cols=107 Identities=14% Similarity=0.033 Sum_probs=77.1
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhccccccccC--ccccccccccccccchhhhhhhcccceehhhhh
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQ--TGGSAGSKLTNFSTDLKEASSKATVAAVDVLRN 168 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~~~~~~--~~~~~~~~~~~~~tgl~e~~~~~~~~~~d~l~~ 168 (531)
..|||+|||... .. .+.-|..|||.||.|++| ....++. .-+.-......+++||+|+.+++.|++|
T Consensus 303 ~~IyA~GD~~~~-~~----~~~~A~~~G~~aa~~i~~-~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~----- 371 (468)
T PRK14694 303 SGIYAAGDCTDQ-PQ----FVYVAAAGGSRAAINMTG-GDASLDLSAMPEVIFTDPQVATVGLSEAEAQAQGYDT----- 371 (468)
T ss_pred CCEEEEeecCCC-cc----cHHHHHHHHHHHHHHhcC-CCcccccCCCCeEEECCCCeEEeeCCHHHHHHcCCce-----
Confidence 459999999865 32 355688899999999995 4443322 1122222377999999999999999998
Q ss_pred hhhcccceeccCCceeeEccC-CcccCCCchhHhhhhhhhcccceeeecccchHHHHH
Q 009581 169 TIVALEESMTNGASFVVYYYG-TTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVS 225 (531)
Q Consensus 169 ~~~~~e~~~~~~~~~~~y~~G-~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~ 225 (531)
+.....-.++..|+++ .....+ |+ +++.++|+||| +|.++
T Consensus 372 -----~~~~~~~~~~~~~~~~~~~~g~~-----kl--v~~~~~~~ilG-----~~~~g 412 (468)
T PRK14694 372 -----DSRTLDLENVPRALVNFDTGGFI-----KM--VAERGSGRLLG-----VQVVA 412 (468)
T ss_pred -----EEEEEecccchhhhhcCCCceEE-----EE--EEECCCCEEEE-----EEEEC
Confidence 5555555666667765 344566 77 88888999999 77666
No 79
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.63 E-value=1.5e-05 Score=86.51 Aligned_cols=107 Identities=9% Similarity=-0.036 Sum_probs=76.9
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhccccccc-cCcccccccc-ccccccchhhhhhhcccceehhhhh
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSI-DQTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRN 168 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~~~~-~~~~~~~~~~-~~~~~tgl~e~~~~~~~~~~d~l~~ 168 (531)
..|||+|||... + ..+..|.+||+.+++|+++.....+ .+.+.+.+.. ...+++||+|+.+++.|++|
T Consensus 305 ~~IyA~GD~~~~-~----~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~vf~~p~~a~vGlte~~a~~~g~~~----- 374 (466)
T PRK07845 305 PGIYAAGDCTGV-L----PLASVAAMQGRIAMYHALGEAVSPLRLKTVASNVFTRPEIATVGVSQAAIDSGEVPA----- 374 (466)
T ss_pred CCEEEEeeccCC-c----cchhHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCCcceeecCCHHHHHhCCCce-----
Confidence 459999999854 2 3378899999999999995321212 2445555553 67999999999999999988
Q ss_pred hhhcccceeccCC--ceeeEccCCcccCCCchhHhhhhhhhcccceeeecccchHHHHH
Q 009581 169 TIVALEESMTNGA--SFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVS 225 (531)
Q Consensus 169 ~~~~~e~~~~~~~--~~~~y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~ 225 (531)
+....... .+. +++|.....+ |+ +++.++|+||| +|.++
T Consensus 375 -----~~~~~~~~~~~~~-~~~~~~~g~~-----kl--i~d~~~~~ilG-----~~~~g 415 (466)
T PRK07845 375 -----RTVMLPLATNPRA-KMSGLRDGFV-----KL--FCRPGTGVVIG-----GVVVA 415 (466)
T ss_pred -----EEEEEecccCchh-hhcCCCceEE-----EE--EEECCCCEEEE-----EEEEC
Confidence 43332222 222 3578777778 88 88888999999 77665
No 80
>PLN02546 glutathione reductase
Probab=97.61 E-value=1.4e-05 Score=89.37 Aligned_cols=109 Identities=8% Similarity=-0.044 Sum_probs=75.3
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhccccc-cccCcccccccc-ccccccchhhhhhhcccceehhhhh
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFS-SIDQTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRN 168 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~~-~~~~~~~~~~~~-~~~~~tgl~e~~~~~~~~~~d~l~~ 168 (531)
..|||+|||... .. .+..|.+|||.+|+|++|+... ...+++.+.+.. ...+++||+|+.+++.|++|++.+.
T Consensus 381 p~IYAaGDv~~~-~~----l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~~vft~Peia~VGlte~eA~~~g~~~~~~~~ 455 (558)
T PLN02546 381 PSIWAVGDVTDR-IN----LTPVALMEGGALAKTLFGNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYGDVDVFTA 455 (558)
T ss_pred CCEEEeeccCCC-cc----cHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCchHhhccCCHHHHHHcCCCeEEEEE
Confidence 459999999864 22 3568999999999999953322 223566776666 4799999999999999988833211
Q ss_pred hhhcccceeccCCceeeEccCCcccCCCchhHhhhhhhhcccceeeecccchHHHHH
Q 009581 169 TIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVS 225 (531)
Q Consensus 169 ~~~~~e~~~~~~~~~~~y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~ 225 (531)
.+ ...+..|+.+.....+ |+ +++.++++||| +|.++
T Consensus 456 ~~---------~~~~~~~~~~~~~g~~-----Kl--v~d~~t~~ILG-----a~ivG 491 (558)
T PLN02546 456 NF---------RPLKATLSGLPDRVFM-----KL--IVCAKTNKVLG-----VHMCG 491 (558)
T ss_pred ec---------ccchhhhhCCCCcEEE-----EE--EEECCCCEEEE-----EEEEC
Confidence 11 1122223333455566 77 88889999999 77666
No 81
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.60 E-value=1.6e-05 Score=86.35 Aligned_cols=107 Identities=11% Similarity=0.062 Sum_probs=76.9
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhccccccccCcccccccc--ccccccchhhhhhhcccceehhhhh
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK--LTNFSTDLKEASSKATVAAVDVLRN 168 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~~~~~~~~~~~~~~--~~~~~tgl~e~~~~~~~~~~d~l~~ 168 (531)
..||++|||+.. . ..+..|.+||+.++++++|+....++...-..+.- ...+++|++|+.+++.|++|
T Consensus 311 ~~IyAiGD~~~~-~----~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~g~~~----- 380 (472)
T PRK05976 311 RHIYAIGDVIGE-P----QLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPACCYTDPEVASVGLTEEEAKEAGYDV----- 380 (472)
T ss_pred CCEEEeeecCCC-c----ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEECcCceEEEeCCHHHHHHcCCCE-----
Confidence 459999999853 2 23678999999999999953336677654222222 56889999999999999988
Q ss_pred hhhcccceec--cCCceeeEccCCcccCCCchhHhhhhhhhcccceeeecccchHHHHH
Q 009581 169 TIVALEESMT--NGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVS 225 (531)
Q Consensus 169 ~~~~~e~~~~--~~~~~~~y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~ 225 (531)
..... ...++..| ++.....+ |+ +++.++++||| +|.++
T Consensus 381 -----~~~~~~~~~~~~~~~-~~~~~g~~-----kl--i~d~~~~~ilG-----~~~~g 421 (472)
T PRK05976 381 -----KVGKFPFAANGKALT-YGESDGFV-----KV--VADRDTHDILG-----VQAVG 421 (472)
T ss_pred -----EEEEEECCcchhhhh-cCCCceEE-----EE--EEECCCCEEEE-----EEEEC
Confidence 44333 22344444 46667777 88 88888999999 77666
No 82
>PTZ00058 glutathione reductase; Provisional
Probab=97.57 E-value=1.6e-05 Score=88.88 Aligned_cols=111 Identities=9% Similarity=-0.048 Sum_probs=73.2
Q ss_pred cccccccchhhhhhhh-----------------------hccc-------cchhhhhhhHHHHHhhcccc-ccccCcccc
Q 009581 91 SSMIKGENAVKSSLDT-----------------------ITSS-------LTSIKKSTSEAVDNVVSRVF-SSIDQTGGS 139 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~-----------------------~t~~-------~~~a~k~~r~~~d~~~~g~~-~~~~~~~~~ 139 (531)
..|||+|||+.. ++. +|++ +..|++|||.+++|++|+.. .....++.+
T Consensus 366 p~IYA~GDv~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~~~~~~~~~~ip~ 444 (561)
T PTZ00058 366 KHIYAVGDCCMV-KKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSRTTNYKLIPS 444 (561)
T ss_pred CCEEEeEeccCc-cccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCCCCcccCCCCCCe
Confidence 469999999985 442 4443 67899999999999995322 122235666
Q ss_pred cccc-ccccccchhhhhhhcc-cc-eehhhhhhhhcccceeccCCceee---E--ccCC-cccCCCchhHhhhhhhhccc
Q 009581 140 AGSK-LTNFSTDLKEASSKAT-VA-AVDVLRNTIVALEESMTNGASFVV---Y--YYGT-TKESLPPEIRDALNLYEDRA 210 (531)
Q Consensus 140 ~~~~-~~~~~tgl~e~~~~~~-~~-~~d~l~~~~~~~e~~~~~~~~~~~---y--~~G~-~~~~lp~~v~kl~~~~e~~t 210 (531)
.+.- ...|++||+|..+++. |+ .+ .+......... + .|+. ....+ |+ +++.++
T Consensus 445 ~vft~peiA~vGlte~eA~~~~g~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~g~~-----Kl--i~~~~t 506 (561)
T PTZ00058 445 VIFSHPPIGTIGLSEQEAIDIYGKENV-----------KIYESRFTNLFFSVYDMDPAQKEKTYL-----KL--VCVGKE 506 (561)
T ss_pred EEeCCchheeeeCCHHHHHHhcCCCcE-----------EEEEeecchhhhhhhcccccCCCCeEE-----EE--EEECCC
Confidence 6555 5799999999999976 55 34 22222222111 1 1332 33455 77 888889
Q ss_pred ceeeecccchHHHHH
Q 009581 211 VKLWRPVGSALQQVS 225 (531)
Q Consensus 211 g~ilg~~G~~aq~v~ 225 (531)
|+||| +|.++
T Consensus 507 ~~ILG-----~~ivG 516 (561)
T PTZ00058 507 ELIKG-----LHIVG 516 (561)
T ss_pred CEEEE-----EEEEC
Confidence 99999 77666
No 83
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.53 E-value=2.2e-05 Score=84.59 Aligned_cols=107 Identities=11% Similarity=0.021 Sum_probs=76.0
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhcccccccc-Cccccccc-cccccccchhhhhhhcccceehhhhh
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSID-QTGGSAGS-KLTNFSTDLKEASSKATVAAVDVLRN 168 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~~~~~-~~~~~~~~-~~~~~~tgl~e~~~~~~~~~~d~l~~ 168 (531)
..|||+|||... . ..+..|.+|||.+|+++.++....++ ..+.+.+. ....+++|++|..+++.|++|
T Consensus 299 ~~IyA~GD~~~~-~----~~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~~~----- 368 (460)
T PRK06292 299 PGIYAAGDVNGK-P----PLLHEAADEGRIAAENAAGDVAGGVRYHPIPSVVFTDPQIASVGLTEEELKAAGIDY----- 368 (460)
T ss_pred CCEEEEEecCCC-c----cchhHHHHHHHHHHHHhcCCCCCCcCCCCCCeEEECCCccEEeECCHHHHHhcCCCe-----
Confidence 469999999854 2 23678999999999999953233333 22333333 277999999999999999988
Q ss_pred hhhcccceecc--CCceeeEccCCcccCCCchhHhhhhhhhcccceeeecccchHHHHH
Q 009581 169 TIVALEESMTN--GASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVS 225 (531)
Q Consensus 169 ~~~~~e~~~~~--~~~~~~y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~ 225 (531)
+..... ..+++.| ++.....+ |+ +++.++++||| +|.++
T Consensus 369 -----~~~~~~~~~~~~~~~-~~~~~g~~-----kl--v~d~~~~~ilG-----~~~vg 409 (460)
T PRK06292 369 -----VVGEVPFEAQGRARV-MGKNDGFV-----KV--YADKKTGRLLG-----AHIIG 409 (460)
T ss_pred -----EEEEEecccchHHHh-cCCCCeEE-----EE--EEECCCCEEEE-----EEEEC
Confidence 444332 2233333 57777777 88 88888999999 77666
No 84
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.51 E-value=2.5e-05 Score=84.86 Aligned_cols=103 Identities=10% Similarity=-0.014 Sum_probs=73.3
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhcccccc-----ccCccccccccccccccchhhhhhhcccceehh
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSS-----IDQTGGSAGSKLTNFSTDLKEASSKATVAAVDV 165 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~~~-----~~~~~~~~~~~~~~~~tgl~e~~~~~~~~~~d~ 165 (531)
..|||+|||... . .-+..|++||+.+++|+++ .... +.+++.| ....+++||+|+.+++.|++|
T Consensus 306 ~~IyA~GD~~~~-~----~la~~A~~~g~~aa~~i~~-~~~~~~~~~~p~~~~t---~p~ia~vGlte~~a~~~g~~~-- 374 (466)
T PRK06115 306 PGVWVIGDVTSG-P----MLAHKAEDEAVACIERIAG-KAGEVNYGLIPGVIYT---RPEVATVGKTEEQLKAEGRAY-- 374 (466)
T ss_pred CCEEEeeecCCC-c----ccHHHHHHHHHHHHHHHcC-CCCCCCCCCCCeEEEC---CcccEEeeCCHHHHHHCCCCE--
Confidence 349999999864 1 2478999999999999995 4332 2233333 267999999999999999998
Q ss_pred hhhhhhcccceec--cCCceeeEccCCcccCCCchhHhhhhhhhcccceeeecccchHHHHH
Q 009581 166 LRNTIVALEESMT--NGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVS 225 (531)
Q Consensus 166 l~~~~~~~e~~~~--~~~~~~~y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~ 225 (531)
+.... ...++..| ++.....+ |+ ++++++++||| +|.++
T Consensus 375 --------~~~~~~~~~~~~~~~-~~~~~g~~-----kl--v~~~~~~~ilG-----~~~~g 415 (466)
T PRK06115 375 --------KVGKFPFTANSRAKI-NHETEGFA-----KI--LADARTDEVLG-----VHMVG 415 (466)
T ss_pred --------EEEEEecccChhhHh-cCCCceEE-----EE--EEECCCCEEEE-----EEEEC
Confidence 33322 23334443 45556667 88 88889999999 77655
No 85
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.49 E-value=2.8e-05 Score=85.42 Aligned_cols=109 Identities=10% Similarity=-0.015 Sum_probs=72.2
Q ss_pred ccccccccchhhhhhhhhccccchhhhhhhHHHHHhhcccccccc-Ccccccccc-ccccccchhhhhhhcccceehhhh
Q 009581 90 SSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSID-QTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLR 167 (531)
Q Consensus 90 ~~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~~~~~-~~~~~~~~~-~~~~~tgl~e~~~~~~~~~~d~l~ 167 (531)
...|||+|||.-. . ..+.-|++||+.+++|++|+....++ ..+.+.+.. ...+++||+|+.+++.+..+
T Consensus 318 ~~~IyA~GDv~~~-~----~l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~vft~peia~vGlte~eA~~~~~~~---- 388 (486)
T TIGR01423 318 VPNIYAIGDVTDR-V----MLTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLVEEDAAKKFEKV---- 388 (486)
T ss_pred CCCEEEeeecCCC-c----ccHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEEeCCCceEEeeCCHHHHHhcCCce----
Confidence 4579999999743 1 12556899999999999964333333 346666666 57999999999999876555
Q ss_pred hhhhcccceeccCCceeeEccCCc--ccCCCchhHhhhhhhhcccceeeecccchHHHHH
Q 009581 168 NTIVALEESMTNGASFVVYYYGTT--KESLPPEIRDALNLYEDRAVKLWRPVGSALQQVS 225 (531)
Q Consensus 168 ~~~~~~e~~~~~~~~~~~y~~G~~--~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~ 225 (531)
......-.+...++++.. ...+ |+ +++.++++||| +|.++
T Consensus 389 ------~~~~~~~~~~~~~~~~~~~~~g~~-----Kl--v~d~~~~~iLG-----a~ivg 430 (486)
T TIGR01423 389 ------AVYESSFTPLMHNISGSKYKKFVA-----KI--VTNHADGTVLG-----VHLLG 430 (486)
T ss_pred ------EEEEEeeCchhhhhccCccCceEE-----EE--EEECCCCEEEE-----EEEEC
Confidence 111111112223344443 2344 77 78888999999 77665
No 86
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.39 E-value=4e-05 Score=82.97 Aligned_cols=106 Identities=6% Similarity=0.016 Sum_probs=73.7
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhcccccccc-Ccccccccc-ccccccchhhhhhhcccceehhhhh
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSID-QTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRN 168 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~~~~~-~~~~~~~~~-~~~~~tgl~e~~~~~~~~~~d~l~~ 168 (531)
..|||+|||+.- . ..+..|++|||+++.+++| ....++ ..+...+.- ...+++||+|+.+++.|++|
T Consensus 298 ~~VyA~GD~~~~-~----~la~~A~~~g~~aa~~~~g-~~~~~~~~~~p~~v~~~p~~a~vGlte~~a~~~g~~~----- 366 (458)
T PRK06912 298 PHIYACGDVIGG-I----QLAHVAFHEGTTAALHASG-EDVKVNYHAVPRCIYTSPEIASVGLTEKQAREQYGDI----- 366 (458)
T ss_pred CCEEEEeecCCC-c----ccHHHHHHHHHHHHHHHcC-CCCCCCcCCCCeEEecCchhEEeeCCHHHHHHCCCCe-----
Confidence 459999999842 1 2377899999999999994 555443 445544432 66899999999999999888
Q ss_pred hhhccccee--ccCCceeeEccCCcccCCCchhHhhhhhhhcccceeeecccchHHHHH
Q 009581 169 TIVALEESM--TNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVS 225 (531)
Q Consensus 169 ~~~~~e~~~--~~~~~~~~y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~ 225 (531)
.... .....+..+ ++.....+ |+ +++.++++||| +|.++
T Consensus 367 -----~~~~~~~~~~~~~~~-~~~~~g~~-----kl--i~d~~~~~ilG-----~~~~g 407 (458)
T PRK06912 367 -----RIGEFPFTANGKALI-IGEQTGKV-----KV--IVEPKYQEIVG-----ISIIG 407 (458)
T ss_pred -----EEEEEecCcchhHhh-cCCCceEE-----EE--EEECCCCEEEE-----EEEEC
Confidence 2221 122222223 34455556 77 88888999999 77665
No 87
>PRK06116 glutathione reductase; Validated
Probab=97.32 E-value=4.9e-05 Score=81.85 Aligned_cols=108 Identities=5% Similarity=-0.057 Sum_probs=74.2
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhcccc-cc-ccCcccccccc-ccccccchhhhhhhcccce--ehh
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVF-SS-IDQTGGSAGSK-LTNFSTDLKEASSKATVAA--VDV 165 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~-~~-~~~~~~~~~~~-~~~~~tgl~e~~~~~~~~~--~d~ 165 (531)
..|||+|||... . ..+..|.+|||.+|+|++|+.. .. .-.++.+.+.. ...+++||+|+.+++.|++ +
T Consensus 296 ~~IyA~GD~~~~-~----~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~if~~p~~a~vGlte~~a~~~~~~~~~-- 368 (450)
T PRK06116 296 PGIYAVGDVTGR-V----ELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAREQYGEDNV-- 368 (450)
T ss_pred CCEEEEeecCCC-c----CcHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCeEEeCCCccEEeeCCHHHHHHhCCCCcE--
Confidence 569999999743 2 2367899999999999995332 11 22566677766 4899999999999998876 4
Q ss_pred hhhhhhcccceecc-CCceeeEccCCcccCCCchhHhhhhhhhcccceeeecccchHHHHH
Q 009581 166 LRNTIVALEESMTN-GASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVS 225 (531)
Q Consensus 166 l~~~~~~~e~~~~~-~~~~~~y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~ 225 (531)
...... ...+..++.+..+..+ |+ +++.++++||| +|.++
T Consensus 369 --------~~~~~~~~~~~~~~~~~~~~g~~-----kl--v~~~~~~~ilG-----~~~~g 409 (450)
T PRK06116 369 --------KVYRSSFTPMYTALTGHRQPCLM-----KL--VVVGKEEKVVG-----LHGIG 409 (450)
T ss_pred --------EEEEEecchhHHHHhcCCCceEE-----EE--EEECCCCEEEE-----EEEEC
Confidence 111111 1111222345566666 88 88888999999 77666
No 88
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=97.28 E-value=0.00048 Score=71.57 Aligned_cols=99 Identities=17% Similarity=0.281 Sum_probs=69.5
Q ss_pred CCccCHHHHHHHHhCC-----CCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHH
Q 009581 269 SGDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAA 343 (531)
Q Consensus 269 ~~~ISp~El~elL~~~-----~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~al 343 (531)
...|+++.++.++++. .+.+|||.|-+.||..|||-.|+ ||.-. +.++.++
T Consensus 241 ~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaV--------Ni~s~---~~l~~~F------------- 296 (427)
T COG5105 241 IQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAV--------NISST---KKLGLLF------------- 296 (427)
T ss_pred hhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeee--------ecchH---HHHHHHH-------------
Confidence 4579999999988542 24679999999999999999999 76421 1122111
Q ss_pred HHhhhcccCCCcEEEEEeC-CCcHHHHHHHHHHHc------------cCCceEEecchHHHHHH
Q 009581 344 VIRNLKIVQDRSKVIVMDA-DGTRSKGIARSLRKL------------GVMRAFLVQGGFQSWVK 394 (531)
Q Consensus 344 gI~~Lk~l~kd~~IVVyC~-sG~RS~~AA~~L~~l------------Gf~nV~~L~GG~~aW~~ 394 (531)
+. |.+-.-+-+|+.|. +.+|+...|.-|+.+ =|..||+|+|||++.-.
T Consensus 297 -~h--kplThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~ 357 (427)
T COG5105 297 -RH--KPLTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS 357 (427)
T ss_pred -Hh--ccccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence 00 00112456899996 567999999888643 24689999999998754
No 89
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.25 E-value=7.5e-05 Score=81.32 Aligned_cols=107 Identities=7% Similarity=-0.013 Sum_probs=75.2
Q ss_pred ccccccccchhhhhhhhhccccchhhhhhhHHHHHhhcccccccc-Cccccccc-cccccccchhhhhhhcccceehhhh
Q 009581 90 SSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSID-QTGGSAGS-KLTNFSTDLKEASSKATVAAVDVLR 167 (531)
Q Consensus 90 ~~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~~~~~-~~~~~~~~-~~~~~~tgl~e~~~~~~~~~~d~l~ 167 (531)
...||++|||... . ..+..|.+||+.+|+++.+ ....++ ..+.+.+. ....+++||+|..+++.|++|
T Consensus 314 ~~~VyA~GD~~~~-~----~~~~~A~~~G~~aa~~i~g-~~~~~~~~~~p~~~~~~pe~a~vGlte~~a~~~g~~~---- 383 (475)
T PRK06327 314 VPNVYAIGDVVRG-P----MLAHKAEEEGVAVAERIAG-QKGHIDYNTIPWVIYTSPEIAWVGKTEQQLKAEGVEY---- 383 (475)
T ss_pred CCCEEEEEeccCC-c----chHHHHHHHHHHHHHHHcC-CCCCCCCCCCCeEEeCCcceEEEeCCHHHHHHcCCCE----
Confidence 3579999999864 2 2477899999999999995 433221 23333332 267889999999999999998
Q ss_pred hhhhcccceecc--CCceeeEccCCcccCCCchhHhhhhhhhcccceeeecccchHHHHH
Q 009581 168 NTIVALEESMTN--GASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVS 225 (531)
Q Consensus 168 ~~~~~~e~~~~~--~~~~~~y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~ 225 (531)
...... ..++..| ++.....+ |+ +++.++++||| +|.++
T Consensus 384 ------~~~~~~~~~~~~~~~-~~~~~g~~-----kl--v~d~~~~~ilG-----~~~~g 424 (475)
T PRK06327 384 ------KAGKFPFMANGRALA-MGEPDGFV-----KI--IADAKTDEILG-----VHVIG 424 (475)
T ss_pred ------EEEEEcccccchhhh-cCCCCeEE-----EE--EEECCCCEEEE-----EEEEC
Confidence 443332 2333443 46666677 88 88888999999 77666
No 90
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.19 E-value=8.2e-05 Score=80.61 Aligned_cols=106 Identities=8% Similarity=0.072 Sum_probs=68.6
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhccccc-ccc-Ccccccccc-ccccccchhhhhhhcc-cce-ehh
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFS-SID-QTGGSAGSK-LTNFSTDLKEASSKAT-VAA-VDV 165 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~~-~~~-~~~~~~~~~-~~~~~tgl~e~~~~~~-~~~-~d~ 165 (531)
..|||+|||... .. .+.-|.+|||.++++++++... .++ ....+.+.- ...+++||+|+.+++. |+. +
T Consensus 296 p~IyAiGD~~~~-~~----~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~f~~p~ia~vGlte~~a~~~~g~~~~-- 368 (450)
T TIGR01421 296 PGIYALGDVVGK-VE----LTPVAIAAGRKLSERLFNGKTDDKLDYNNVPTVVFSHPPIGTIGLTEKEAIEKYGKENI-- 368 (450)
T ss_pred CCEEEEEecCCC-cc----cHHHHHHHHHHHHHHHhcCCCCCccCcccCCeEEeCCCceEEEeCCHHHHHhhcCCCCE--
Confidence 459999999854 22 2557899999999999964322 111 223333222 4688999999998776 654 4
Q ss_pred hhhhhhcccceeccCCceeeEc---cCCcccCCCchhHhhhhhhhcccceeeecccchHHHHH
Q 009581 166 LRNTIVALEESMTNGASFVVYY---YGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVS 225 (531)
Q Consensus 166 l~~~~~~~e~~~~~~~~~~~y~---~G~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~ 225 (531)
.+...+.+ ..|+ +|.....+ |+ +++.++|+||| +|.++
T Consensus 369 ---------~~~~~~~~-~~~~~~~~~~~~g~~-----kl--v~~~~~~~ilG-----~~~~g 409 (450)
T TIGR01421 369 ---------KVYNSSFT-PMYYAMTSEKQKCRM-----KL--VCAGKEEKVVG-----LHGIG 409 (450)
T ss_pred ---------EEEEEEcC-hhHHHHhcCCCceEE-----EE--EEECCCCEEEE-----EEEEC
Confidence 12222222 2222 36666666 78 88888999999 77665
No 91
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.03 E-value=0.00017 Score=77.76 Aligned_cols=107 Identities=10% Similarity=0.053 Sum_probs=74.7
Q ss_pred ccccccccchhhhhhhhhccccchhhhhhhHHHHHhhccccccccCcccccccc---ccccccchhhhhhhcccceehhh
Q 009581 90 SSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVL 166 (531)
Q Consensus 90 ~~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~~~~~~~~~~~~~~---~~~~~tgl~e~~~~~~~~~~d~l 166 (531)
...||++|||... . ..+..|.+||+.+|+++.+.....++. ....... ...+++|++|+.+++.|+++
T Consensus 299 ~~~IyaiGD~~~~-~----~~~~~A~~~g~~aa~~i~~~~~~~~~~-~~~~~~~~~~~~~a~vG~~~~~a~~~g~~~--- 369 (461)
T TIGR01350 299 VPGIYAIGDVIGG-P----MLAHVASHEGIVAAENIAGKEPAPIDY-DAVPSCIYTDPEVASVGLTEEQAKEAGYDV--- 369 (461)
T ss_pred CCCEEEeeecCCC-c----ccHHHHHHHHHHHHHHHcCCCCCCCCC-CCCCeEEecCCceEEEeCCHHHHHhCCCCe---
Confidence 3679999999864 1 347789999999999999533224442 2222222 56789999999999999988
Q ss_pred hhhhhcccceecc--CCceeeEccCCcccCCCchhHhhhhhhhcccceeeecccchHHHHH
Q 009581 167 RNTIVALEESMTN--GASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVS 225 (531)
Q Consensus 167 ~~~~~~~e~~~~~--~~~~~~y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~ 225 (531)
+..... ..++..| ++.....+ |+ +++.++++||| +|.++
T Consensus 370 -------~~~~~~~~~~~~~~~-~~~~~g~~-----kl--~~~~~~~~ilG-----~~~~g 410 (461)
T TIGR01350 370 -------KIGKFPFAANGKALA-LGETDGFV-----KI--IADKKTGEILG-----AHIIG 410 (461)
T ss_pred -------EEEEEeCccchHHHh-cCCCceEE-----EE--EEECCCCEEEE-----EEEEC
Confidence 333332 2223333 46677777 88 88888999999 77666
No 92
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.85 E-value=0.00028 Score=77.41 Aligned_cols=68 Identities=6% Similarity=-0.030 Sum_probs=48.7
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhcccc--ccccCcccccccc-ccccccchhhhhhhcc-cc-ee
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVF--SSIDQTGGSAGSK-LTNFSTDLKEASSKAT-VA-AV 163 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~--~~~~~~~~~~~~~-~~~~~tgl~e~~~~~~-~~-~~ 163 (531)
..|||+|||+.. ... .+..|++|||.+++|++++.. ..+++. .+.+.. ...+++||+|+.+++. ++ .+
T Consensus 311 p~IyA~GDv~~~-~~~---l~~~A~~~g~~aa~~i~~~~~~~~~~~~~-p~~i~~~p~ia~vGlte~~a~~~~g~~~~ 383 (484)
T TIGR01438 311 PYIYAVGDILED-KQE---LTPVAIQAGRLLAQRLFSGSTVICDYENV-PTTVFTPLEYGACGLSEEKAVEKFGEENI 383 (484)
T ss_pred CCEEEEEEecCC-Ccc---chHHHHHHHHHHHHHHhcCCCcccccccC-CeEEeCCCceeeecCCHHHHHHhcCCCcE
Confidence 579999999864 222 256799999999999995432 234443 333333 6799999999999876 55 45
No 93
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.81 E-value=0.00036 Score=74.93 Aligned_cols=108 Identities=3% Similarity=-0.149 Sum_probs=73.3
Q ss_pred ccccccccchhhhhhhhhccccchhhhhhhHHHHHhhcccc--ccccCcccccccc-ccccccchhhhhhhcccceehhh
Q 009581 90 SSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVF--SSIDQTGGSAGSK-LTNFSTDLKEASSKATVAAVDVL 166 (531)
Q Consensus 90 ~~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~--~~~~~~~~~~~~~-~~~~~tgl~e~~~~~~~~~~d~l 166 (531)
...||++|||... ...+.-|..++|.++.++.++.. ....+.+.+.+.- ...+++||+|+.+++.|++|
T Consensus 283 ~~~IyaiGD~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~--- 354 (438)
T PRK07251 283 VPGVFAVGDVNGG-----PQFTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTTMFITPPLSQVGLTEKEAKEAGLPY--- 354 (438)
T ss_pred CCCEEEeeecCCC-----cccHhHHHHHHHHHHHHHcCCCCccccccCCCCEEEECCCceEeeeCCHHHHHhcCCCe---
Confidence 3569999999732 11256788899999999995422 1234566665433 67899999999999999988
Q ss_pred hhhhhcccceec--cCCceeeEccCCcccCCCchhHhhhhhhhcccceeeecccchHHHHH
Q 009581 167 RNTIVALEESMT--NGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVS 225 (531)
Q Consensus 167 ~~~~~~~e~~~~--~~~~~~~y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~v~ 225 (531)
..... ...++. .+++.....+ |+ +++.++++||| +|.++
T Consensus 355 -------~~~~~~~~~~~~~-~~~~~~~g~~-----kl--i~d~~~~~ilG-----~~~~g 395 (438)
T PRK07251 355 -------AVKELLVAAMPRA-HVNNDLRGAF-----KV--VVNTETKEILG-----ATLFG 395 (438)
T ss_pred -------EEEEEECCcchhh-hhcCCCcEEE-----EE--EEECCCCEEEE-----EEEEC
Confidence 22222 122222 2344445556 77 78888999999 88766
No 94
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.74 E-value=0.00047 Score=80.76 Aligned_cols=94 Identities=14% Similarity=0.023 Sum_probs=67.8
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhccccccccCcccccccc---ccccccchhhhhhhcccceehhhh
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDLKEASSKATVAAVDVLR 167 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~~~~~~~~~~~~~~---~~~~~tgl~e~~~~~~~~~~d~l~ 167 (531)
..|||+|||.+. .+.+.+-+.++.+||+++|+|++| ....|++...+...| +.++|.|. . .+...
T Consensus 274 p~IYAiGD~a~~-~~~~~gl~~~a~~~a~vaa~~i~g-~~~~~~g~~~~~~lk~~G~~v~s~G~--~----~~~~~---- 341 (847)
T PRK14989 274 PDIYAIGECASW-NNRVFGLVAPGYKMAQVAVDHLLG-SENAFEGADLSAKLKLLGVDVGGIGD--A----HGRTP---- 341 (847)
T ss_pred CCEEEeecceeE-cCcccccHHHHHHHHHHHHHHhcC-CCcCCCCcccceEEEECCcceEeccc--c----cCCCC----
Confidence 459999999998 788888899999999999999995 677899988877776 55666662 1 11110
Q ss_pred hhhhcccceeccCCceeeEccCCcccCCCchhHhhhhhhhcccceeee
Q 009581 168 NTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWR 215 (531)
Q Consensus 168 ~~~~~~e~~~~~~~~~~~y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg 215 (531)
+.....|+++...... |+ ++++++++|+|
T Consensus 342 ------------~~~~~~~~~~~~~~y~-----Kl--v~~~~~~~LlG 370 (847)
T PRK14989 342 ------------GARSYVYLDESKEIYK-----RL--IVSEDNKTLLG 370 (847)
T ss_pred ------------CceeEEEEcCCCCEEE-----EE--EEECCCCEEEE
Confidence 1111335555555555 77 77778899988
No 95
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.54 E-value=0.00067 Score=74.69 Aligned_cols=68 Identities=4% Similarity=-0.092 Sum_probs=48.7
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhccccccc--cCcccccccc-ccccccchhhhhhhcc-c-cee
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSI--DQTGGSAGSK-LTNFSTDLKEASSKAT-V-AAV 163 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~~~~--~~~~~~~~~~-~~~~~tgl~e~~~~~~-~-~~~ 163 (531)
..|||+|||... .. ..+..|.+||+.+++|++++ ...+ ...+.+.+.- ...|++||+|+.+++. + ..+
T Consensus 308 p~IyAiGDv~~~-~~---~l~~~A~~~g~~aa~ni~g~-~~~~~~~~~~p~~ift~p~ia~vGlte~~A~~~~~~~~~ 380 (499)
T PTZ00052 308 PNIFAVGDVVEG-RP---ELTPVAIKAGILLARRLFKQ-SNEFIDYTFIPTTIFTPIEYGACGYSSEAAIAKYGEDDI 380 (499)
T ss_pred CCEEEEEEecCC-Cc---ccHHHHHHHHHHHHHHHhCC-CCCcCccccCCeEEecCCcceeecCCHHHHHHhcCCCCE
Confidence 579999999863 22 23678999999999999953 3222 1334555543 6789999999999987 4 355
No 96
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=95.64 E-value=0.0056 Score=67.15 Aligned_cols=104 Identities=13% Similarity=0.029 Sum_probs=68.7
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhccccccc-cCcccccccc-ccccccchhhhhhhcccceehhhhh
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSI-DQTGGSAGSK-LTNFSTDLKEASSKATVAAVDVLRN 168 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~~~~-~~~~~~~~~~-~~~~~tgl~e~~~~~~~~~~d~l~~ 168 (531)
..|||+||++-. .. + +--|..|||+|++|++|+..... ...+-.++.- =..++.||+|..+++.+++|.+.+-
T Consensus 303 p~IyA~GDV~~~-~~-L---ah~A~~eg~iaa~~i~g~~~~~~d~~~iP~~ift~Peia~VGlte~ea~~~g~~~~~~~~ 377 (454)
T COG1249 303 PGIYAIGDVIGG-PM-L---AHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEAGIDYKVGKF 377 (454)
T ss_pred CCEEEeeccCCC-cc-c---HhHHHHHHHHHHHHHhCCCCCcCcccCCCEEEECCCcceeeeCCHHHHHhcCCceEEEEe
Confidence 459999999877 33 3 45789999999999995222222 2233333332 3478999999999999999844444
Q ss_pred hhhcccceeccCCceeeEccCCcccCCCchhHhhhhhhhcccceeee
Q 009581 169 TIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWR 215 (531)
Q Consensus 169 ~~~~~e~~~~~~~~~~~y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg 215 (531)
-+.+.-..+.... ....+ |+ +++.++++|||
T Consensus 378 ~f~~~~ra~~~~~---------~~G~~-----Kl--v~d~~t~~IlG 408 (454)
T COG1249 378 PFAANGRAITMGE---------TDGFV-----KL--VVDKETGRILG 408 (454)
T ss_pred ecccchhHHhccC---------CceEE-----EE--EEECCCCeEEE
Confidence 4444433333222 22233 66 77888999999
No 97
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=94.86 E-value=0.029 Score=50.25 Aligned_cols=90 Identities=19% Similarity=0.271 Sum_probs=40.8
Q ss_pred CCccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCccc------cccccccccccCcccccchhhhhhcCchhhHHHHHH
Q 009581 269 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL------RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTA 342 (531)
Q Consensus 269 ~~~ISp~El~elL~~~~~avLIDVRs~eEf~~GHIPGA------i~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~a 342 (531)
.++++++++.++.+. .=-.||+.|+..|= .+-|.. ....-..|.++|...- .+ ..+.++.....
T Consensus 12 s~Q~~~~d~~~la~~-GfktVInlRpd~E~--~~qp~~~~~~~~a~~~Gl~y~~iPv~~~--~~-----~~~~v~~f~~~ 81 (110)
T PF04273_consen 12 SGQPSPEDLAQLAAQ-GFKTVINLRPDGEE--PGQPSSAEEAAAAEALGLQYVHIPVDGG--AI-----TEEDVEAFADA 81 (110)
T ss_dssp ECS--HHHHHHHHHC-T--EEEE-S-TTST--TT-T-HHCHHHHHHHCT-EEEE----TT--T-------HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHC-CCcEEEECCCCCCC--CCCCCHHHHHHHHHHcCCeEEEeecCCC--CC-----CHHHHHHHHHH
Confidence 358999999988752 23479999987653 223322 1112234557775421 11 11122221111
Q ss_pred HHHhhhcccCCCcEEEEEeCCCcHHHHHHHHHHH
Q 009581 343 AVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRK 376 (531)
Q Consensus 343 lgI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L~~ 376 (531)
+. ...+||++||++|.|+. +.|.|.+
T Consensus 82 -----l~--~~~~Pvl~hC~sG~Ra~-~l~~l~~ 107 (110)
T PF04273_consen 82 -----LE--SLPKPVLAHCRSGTRAS-ALWALAQ 107 (110)
T ss_dssp -----HH--TTTTSEEEE-SCSHHHH-HHHHHHH
T ss_pred -----HH--hCCCCEEEECCCChhHH-HHHHHHh
Confidence 11 13569999999999996 5555544
No 98
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=94.37 E-value=0.021 Score=66.58 Aligned_cols=62 Identities=10% Similarity=0.084 Sum_probs=53.1
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhcccc-ccccCcccccccc---ccccccchhhh
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVF-SSIDQTGGSAGSK---LTNFSTDLKEA 154 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~-~~~~~~~~~~~~~---~~~~~tgl~e~ 154 (531)
..|||+|||++. .+.+.+...+|.+|||.+|+|+.| .. ..|.++..+...| +..+|.|..+.
T Consensus 265 p~IyA~GD~a~~-~~~~~gl~~~a~~qa~vaA~ni~g-~~~~~~~~~~~~~~lk~~g~~v~s~G~~~~ 330 (785)
T TIGR02374 265 PDIYAVGECAEH-NGRVYGLVAPLYEQAKVLADHICG-VECEEYEGSDLSAKLKLLGVDVWSAGDAQE 330 (785)
T ss_pred CCEEEeeeccee-CCcccccHHHHHHHHHHHHHHhcC-CCCcCCCCCccceEEEECCcceEecccCCC
Confidence 459999999998 777888889999999999999995 55 7899999988888 56789997553
No 99
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=93.30 E-value=0.17 Score=46.42 Aligned_cols=111 Identities=16% Similarity=0.158 Sum_probs=58.1
Q ss_pred CccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCccc------cccccccccccCcccccchhhhhhcCchhhHHHHHHH
Q 009581 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL------RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAA 343 (531)
Q Consensus 270 ~~ISp~El~elL~~~~~avLIDVRs~eEf~~GHIPGA------i~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~al 343 (531)
++++++++..+.+ ..=-.+||.|+..|... -|.. .......|.++|+.. ..+ +++.+....+.+
T Consensus 13 ~qlt~~d~~~L~~-~GiktVIdlR~~~E~~~--~p~~~~~~~~a~~~gl~y~~iPv~~--~~~-----~~~~v~~f~~~~ 82 (135)
T TIGR01244 13 PQLTKADAAQAAQ-LGFKTVINNRPDREEES--QPDFAQIKAAAEAAGVTYHHQPVTA--GDI-----TPDDVETFRAAI 82 (135)
T ss_pred CCCCHHHHHHHHH-CCCcEEEECCCCCCCCC--CCCHHHHHHHHHHCCCeEEEeecCC--CCC-----CHHHHHHHHHHH
Confidence 5799999887653 23348999999877442 1211 001123344677432 111 112222111111
Q ss_pred HHhhhcccCCCcEEEEEeCCCcHHHHHHHHH-HHccCCceEEecchHHHHHHcCCceec
Q 009581 344 VIRNLKIVQDRSKVIVMDADGTRSKGIARSL-RKLGVMRAFLVQGGFQSWVKEGLRIKE 401 (531)
Q Consensus 344 gI~~Lk~l~kd~~IVVyC~sG~RS~~AA~~L-~~lGf~nV~~L~GG~~aW~~aGLPV~~ 401 (531)
. ..+.||++||++|.|+..++.++ ...|...--. +..-++.|+.++.
T Consensus 83 ~-------~~~~pvL~HC~sG~Rt~~l~al~~~~~g~~~~~i----~~~~~~~G~~~~~ 130 (135)
T TIGR01244 83 G-------AAEGPVLAYCRSGTRSSLLWGFRQAAEGVPVEEI----VRRAQAAGYDLSN 130 (135)
T ss_pred H-------hCCCCEEEEcCCChHHHHHHHHHHHHcCCCHHHH----HHHHHHcCCCccc
Confidence 1 13689999999999987665433 3346531111 2334556666554
No 100
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=92.06 E-value=0.0084 Score=52.54 Aligned_cols=61 Identities=15% Similarity=0.147 Sum_probs=42.1
Q ss_pred ccccccchhhhhhhcccceehhhhhhhhcccceeccCCceeeEccCCcccCCCchhHhhhhhhhcccceeeecccchHHH
Q 009581 144 LTNFSTDLKEASSKATVAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQ 223 (531)
Q Consensus 144 ~~~~~tgl~e~~~~~~~~~~d~l~~~~~~~e~~~~~~~~~~~y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg~~G~~aq~ 223 (531)
...+++||+|+.+++.|++|++ ...-....++..++++ ....+ |+ +++.++|+||| +|.
T Consensus 9 p~ia~vGlte~~a~~~g~~~~~--------~~~~~~~~~~~~~~~~-~~g~~-----Kl--i~d~~t~~IlG-----a~~ 67 (110)
T PF02852_consen 9 PEIASVGLTEEEARKQGIDYEV--------VTVPFKSNDRARYYPE-TEGFV-----KL--IFDKKTGRILG-----AQI 67 (110)
T ss_dssp SEEEEEES-HHHHHHHTSGEEE--------EEEEEGGEHHHHHTTT-TEEEE-----EE--EEETTTTBEEE-----EEE
T ss_pred CceEEEccCHHHHHhccCceee--------eeecccccchhcccCC-cceee-----EE--EEEeeccceee-----eee
Confidence 4578999999999999987722 2222333344445544 66666 88 88889999999 776
Q ss_pred HH
Q 009581 224 VS 225 (531)
Q Consensus 224 v~ 225 (531)
+|
T Consensus 68 vg 69 (110)
T PF02852_consen 68 VG 69 (110)
T ss_dssp EE
T ss_pred ec
Confidence 55
No 101
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=91.67 E-value=0.11 Score=53.90 Aligned_cols=109 Identities=17% Similarity=0.126 Sum_probs=77.8
Q ss_pred hhhhhccc----cccccchhhhhhhhhccc------cchhhhhhhHHHHHhhccccccccCcccccccc---ccccccch
Q 009581 85 VNESFSSS----MIKGENAVKSSLDTITSS------LTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTDL 151 (531)
Q Consensus 85 ~~~~~~~~----i~a~gda~~~~~~~~t~~------~~~a~k~~r~~~d~~~~g~~~~~~~~~~~~~~~---~~~~~tgl 151 (531)
+++...++ ||++|||... .+..++. ...+++++++++.++.+ . ..+.+..+....+ +....+|+
T Consensus 258 v~~~~~~~~~~~v~a~GD~~~~-~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~g~ 334 (415)
T COG0446 258 VDERGGTSKDPDVYAAGDVAEI-PAAETGKGGRIALWAIAVAAGRIAAENIAG-A-LRIPGLLGTVISDVGDLCAASTGL 334 (415)
T ss_pred EccccccCCCCCEEeccceEee-ecccCCceeeeechhhHhhhhHHHHHHhcc-c-cccccccCceEEEEcCeEEEEecC
Confidence 44455544 9999999999 7776533 78999999999999995 4 7777888887666 77889999
Q ss_pred hhhhhhcccceehhhhhhhhcccceeccCCc-eeeEccCCcccCCCchhHhhhhhhhcccceeee
Q 009581 152 KEASSKATVAAVDVLRNTIVALEESMTNGAS-FVVYYYGTTKESLPPEIRDALNLYEDRAVKLWR 215 (531)
Q Consensus 152 ~e~~~~~~~~~~d~l~~~~~~~e~~~~~~~~-~~~y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg 215 (531)
++. +..++.+ ...+....+ ...|+++...... ++ .++..++++++
T Consensus 335 ~~~--~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~ 380 (415)
T COG0446 335 TEG--KERGIDV----------VLVVSGGKDPRAHLYPGAELVGI-----KL--VGDADTGRILG 380 (415)
T ss_pred Ccc--cccceee----------eEEEeccCcccccccCCCCeEEE-----EE--EEcCcccceeh
Confidence 998 4444432 233333444 6677777766655 55 55667888888
No 102
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=90.68 E-value=0.13 Score=54.17 Aligned_cols=46 Identities=9% Similarity=0.052 Sum_probs=36.9
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhccccccccCccc
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGG 138 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~~~~~~~~~ 138 (531)
..|||+|||.+. .....+...+|.+|||.+|.|++ |....|++..-
T Consensus 266 ~~VyA~GD~a~~-~~~~~~~~~~a~~~g~~~a~n~~-g~~~~~~~~~~ 311 (377)
T PRK04965 266 PDIYALGDCAEI-NGQVLPFLQPIQLSAMALAKNLL-GQNTPLKLPAM 311 (377)
T ss_pred CCEEEeeecEeE-CCceeehHHHHHHHHHHHHHHhc-CCCcccccCCc
Confidence 459999999987 44555668889999999999999 57777776443
No 103
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=90.23 E-value=0.081 Score=55.48 Aligned_cols=87 Identities=11% Similarity=0.063 Sum_probs=59.4
Q ss_pred CCCccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhh
Q 009581 268 YSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRN 347 (531)
Q Consensus 268 ~~~~ISp~El~elL~~~~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~ 347 (531)
|..--+++++.+.+. .....+|+|....|..+||||++ ++|...+..+.+++...
T Consensus 12 f~~i~~~~~~~~~l~--~~~~~~d~rg~i~~a~egIngti--------s~~~~~~~~~~~~l~~~--------------- 66 (314)
T PRK00142 12 YTPIEDPEAFRDEHL--ALCKSLGLKGRILVAEEGINGTV--------SGTIEQTEAYMAWLKAD--------------- 66 (314)
T ss_pred cccCCCHHHHHHHHH--HHHHHcCCeeEEEEcCCCceEEE--------EecHHHHHHHHHHHhhC---------------
Confidence 444456788887775 45679999999999999999999 99987777776665432
Q ss_pred hcccCCCcEEEEEeCC--CcHH----HHHHHHHHHccCC-ceE
Q 009581 348 LKIVQDRSKVIVMDAD--GTRS----KGIARSLRKLGVM-RAF 383 (531)
Q Consensus 348 Lk~l~kd~~IVVyC~s--G~RS----~~AA~~L~~lGf~-nV~ 383 (531)
+..+++++.-.. +..- ..+.+.|..+|++ ++.
T Consensus 67 ----~~~~~i~l~~~~~~~~~f~~l~~~~~~eLv~~G~d~~v~ 105 (314)
T PRK00142 67 ----PRFADIRFKISEDDGHAFPRLSVKVRKEIVALGLDDDID 105 (314)
T ss_pred ----cCCCCceEEeccccCCCcccceeeeeeeeeecCCCCCCC
Confidence 224555554332 2221 4566677778885 554
No 104
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=84.79 E-value=0.6 Score=54.01 Aligned_cols=59 Identities=8% Similarity=0.089 Sum_probs=48.7
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhccccccccCcccccccc---ccccccc
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK---LTNFSTD 150 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~~~~~~~~~~~~~~---~~~~~tg 150 (531)
.+|||+|+|.+- ....-|-.-|+.+|+|++|||++++....|.|..-++-.| ...+|-|
T Consensus 270 pdIYAvGEcae~-~g~~yGLVaP~yeq~~v~a~hl~~~~~~~y~gsv~stkLKv~Gvdl~S~G 331 (793)
T COG1251 270 PDIYAVGECAEH-RGKVYGLVAPLYEQAKVLADHLCGGEAEAYEGSVTSTKLKVSGVDVFSAG 331 (793)
T ss_pred CCeeehhhHHHh-cCccceehhHHHHHHHHHHHHhccCcccccccccchhhhcccccceeecc
Confidence 469999999999 7777777999999999999999975566899988888888 3455544
No 105
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=83.64 E-value=0.45 Score=53.49 Aligned_cols=96 Identities=17% Similarity=0.191 Sum_probs=56.9
Q ss_pred ccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcc
Q 009581 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (531)
Q Consensus 271 ~ISp~El~elL~~~~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk~ 350 (531)
+|+++++..+ ....++|.|...||.++|+++++ |+|...-.....++...+ ++..
T Consensus 623 rmsAedl~~~----~~l~v~d~r~~~ef~r~~~s~s~--------nip~~~~ea~l~~~~~l~----------~~~~--- 677 (725)
T KOG1093|consen 623 RISAEDLIWL----KMLYVLDTRQESEFQREHFSDSI--------NIPFNNHEADLDWLRFLP----------GIVC--- 677 (725)
T ss_pred cccHHHHHHH----HHHHHHhHHHHHHHHHhhccccc--------cCCccchHHHHHHhhcch----------HhHH---
Confidence 3555554443 34689999999999999999999 999763223333322111 1110
Q ss_pred cCCCcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHH
Q 009581 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSW 392 (531)
Q Consensus 351 l~kd~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW 392 (531)
-..+.++++......+..-...+..+-+.+...+.+|+.+.
T Consensus 678 -~~~~~~v~~~~~~K~~~e~~~~~~~mk~p~~cil~~~~~~~ 718 (725)
T KOG1093|consen 678 -SEGKKCVVVGKNDKHAAERLTELYVMKVPRICILHDGFNNI 718 (725)
T ss_pred -hhCCeEEEeccchHHHHHHhhHHHHhcccHHHHHHHHHhhc
Confidence 13445555544443444444455555577777888888743
No 106
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=82.95 E-value=0.68 Score=49.25 Aligned_cols=42 Identities=5% Similarity=0.064 Sum_probs=33.2
Q ss_pred cccccccchhhhhhhhhccc------cchhhhhhhHHHHHhhccccccccC
Q 009581 91 SSMIKGENAVKSSLDTITSS------LTSIKKSTSEAVDNVVSRVFSSIDQ 135 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~------~~~a~k~~r~~~d~~~~g~~~~~~~ 135 (531)
..|||+|||... .+. +|. ...|++|||.||.||+| ....+++
T Consensus 268 ~~IyA~GD~a~~-~~~-~g~~~~~~~~~~A~~qg~~aa~ni~g-~~~~~~~ 315 (396)
T PRK09754 268 PAIFAGGDVAIT-RLD-NGALHRCESWENANNQAQIAAAAMLG-LPLPLLP 315 (396)
T ss_pred CCEEEccceEee-eCC-CCCEEEECcHHHHHHHHHHHHHHhcC-CCCCCCC
Confidence 569999999976 555 664 47899999999999994 5555654
No 107
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=82.69 E-value=6.4 Score=36.87 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=18.7
Q ss_pred CCccCHHHHHHHHhCCCCcEEEEeCChhhhhhc
Q 009581 269 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERD 301 (531)
Q Consensus 269 ~~~ISp~El~elL~~~~~avLIDVRs~eEf~~G 301 (531)
...+++++...+.. -.=-.+||.|++.|....
T Consensus 27 l~~lt~~d~~~L~~-lgI~tIiDLRs~~E~~~~ 58 (164)
T PF13350_consen 27 LSNLTEADLERLRE-LGIRTIIDLRSPTERERA 58 (164)
T ss_dssp -TT--HHHHHHHHH-TT--EEEE-S-HHHHHHH
T ss_pred cCcCCHHHHHHHHh-CCCCEEEECCCccccccC
Confidence 35688988877652 223479999999998764
No 108
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=80.94 E-value=1.4 Score=45.54 Aligned_cols=100 Identities=22% Similarity=0.248 Sum_probs=53.5
Q ss_pred cCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCccccccccccccccCcccccc--------hhhhhhcCchhhHHHHHHH
Q 009581 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGG--------SVKKLLRGGRELDDTLTAA 343 (531)
Q Consensus 272 ISp~El~elL~~~~~avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~--------~~~~Llk~p~eL~~~L~al 343 (531)
++.+++.+.+. ..+.+++|.|+ +..||.+|+ ++.++.+-. .++.++++......
T Consensus 6 ~s~~wlnr~l~-~~nllllDCRs----es~~i~~A~--------~valPalmlrrl~~g~l~~ra~~p~~~d~~~----- 67 (343)
T KOG1717|consen 6 KSVAWLNRQLE-LGNLLLLDCRS----ESSHIESAI--------NVALPALMLRRLTGGNLPVRALFPRSCDDKR----- 67 (343)
T ss_pred HHHHHHHhhcc-cCceEEEecCC----ccchhhhhh--------hhcchHHHHHHHhCCCCcceeccCCcccccc-----
Confidence 45566666663 46789999999 456888887 332221110 01112221111100
Q ss_pred HHhhhcccCCCcEEEEEeCCCc------H-HHH---HHHHHHHccCCceEEecchHHHHHH
Q 009581 344 VIRNLKIVQDRSKVIVMDADGT------R-SKG---IARSLRKLGVMRAFLVQGGFQSWVK 394 (531)
Q Consensus 344 gI~~Lk~l~kd~~IVVyC~sG~------R-S~~---AA~~L~~lGf~nV~~L~GG~~aW~~ 394 (531)
.+.-.+..++|.|+.+.. . +.. .-..|+..|+ .+|.|.|||..++.
T Consensus 68 ----~~~~c~~v~vilyD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~-~a~yL~ggF~~fq~ 123 (343)
T KOG1717|consen 68 ----FPARCGTVTVILYDESSAEWEEETGAESVLGLLLKKLKDEGC-SARYLSGGFSKFQA 123 (343)
T ss_pred ----ccccCCcceeeecccccccccccchhhhHHHHHHHHHHhcCc-chhhhhcccchhhh
Confidence 000013467899987611 0 111 1234577898 59999999986654
No 109
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=74.04 E-value=6.9 Score=34.73 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=18.7
Q ss_pred CCcEEEEEeCCCc-HHHHH--HHHHHHccC
Q 009581 353 DRSKVIVMDADGT-RSKGI--ARSLRKLGV 379 (531)
Q Consensus 353 kd~~IVVyC~sG~-RS~~A--A~~L~~lGf 379 (531)
.+++|+|+|..|. ||..+ ++.+...|+
T Consensus 80 ~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~ 109 (139)
T cd00127 80 KGGKVLVHCLAGVSRSATLVIAYLMKTLGL 109 (139)
T ss_pred cCCcEEEECCCCCchhHHHHHHHHHHHcCC
Confidence 4679999999987 77643 344555554
No 110
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=72.92 E-value=10 Score=41.93 Aligned_cols=91 Identities=14% Similarity=0.198 Sum_probs=50.7
Q ss_pred cEEEEeCChhhhhhcCCccccccccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCc----EEEEEeC
Q 009581 287 AVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRS----KVIVMDA 362 (531)
Q Consensus 287 avLIDVRs~eEf~~GHIPGAi~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk~l~kd~----~IVVyC~ 362 (531)
..+||.|+.++|..||+-.|. |.. -.-++.+|.+++..+..+--..-..+..+. .=+++-.
T Consensus 327 FFiVDcRpaeqynaGHlstaF--------hlD-------c~lmlqeP~~Fa~av~sLl~aqrqtie~~s~aggeHlcfmG 391 (669)
T KOG3636|consen 327 FFIVDCRPAEQYNAGHLSTAF--------HLD-------CVLMLQEPEKFAIAVNSLLCAQRQTIERDSNAGGEHLCFMG 391 (669)
T ss_pred EEEEeccchhhcccccchhhh--------ccc-------HHHHhcCHHHHHHHHHHHHHHHHHhhhccccCCcceEEEec
Confidence 479999999999999998886 432 122344566665544332110000011121 3344444
Q ss_pred CCc------HHHHHHHHHHHccCCceEEecchHHHHH
Q 009581 363 DGT------RSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (531)
Q Consensus 363 sG~------RS~~AA~~L~~lGf~nV~~L~GG~~aW~ 393 (531)
+|. .-...|..|.+ +-.-|..+.|||....
T Consensus 392 sGr~EED~YmnMviA~FlQK-nk~yVS~~~GGy~~lh 427 (669)
T KOG3636|consen 392 SGRDEEDNYMNMVIAMFLQK-NKLYVSFVQGGYKKLH 427 (669)
T ss_pred cCcchHHHHHHHHHHHHHhc-CceEEEEecchHHHHH
Confidence 554 22334555554 4335889999998665
No 111
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.01 E-value=21 Score=33.05 Aligned_cols=86 Identities=19% Similarity=0.262 Sum_probs=46.8
Q ss_pred CCCccCHHHHHHHHhCCCCcEEEEeCChhhhhhcCCcccc------ccccccccccCccc--ccchhhhhhcCchhhHHH
Q 009581 268 YSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLR------RGARFRYASVYLPE--VGGSVKKLLRGGRELDDT 339 (531)
Q Consensus 268 ~~~~ISp~El~elL~~~~~avLIDVRs~eEf~~GHIPGAi------~a~~~~~~nIPl~e--L~~~~~~Llk~p~eL~~~ 339 (531)
..++++++++.++.. ..=..+|--|+..|= -.=|+.- ..+-..+.+||... +...- -+.+.+.
T Consensus 12 VsgQi~~~D~~~iaa-~GFksiI~nRPDgEe--~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~d------V~~f~~A 82 (130)
T COG3453 12 VSGQISPADIASIAA-LGFKSIICNRPDGEE--PGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEAD------VEAFQRA 82 (130)
T ss_pred ecCCCCHHHHHHHHH-hccceecccCCCCCC--CCCCChHHHHHHHHhcCCceEEeecCCCCCCHHH------HHHHHHH
Confidence 357899999988764 223368888985442 2233321 11112344666432 11110 1112222
Q ss_pred HHHHHHhhhcccCCCcEEEEEeCCCcHHHHHHH
Q 009581 340 LTAAVIRNLKIVQDRSKVIVMDADGTRSKGIAR 372 (531)
Q Consensus 340 L~algI~~Lk~l~kd~~IVVyC~sG~RS~~AA~ 372 (531)
+. .-+.||+.||++|.||...+.
T Consensus 83 l~----------eaegPVlayCrsGtRs~~ly~ 105 (130)
T COG3453 83 LD----------EAEGPVLAYCRSGTRSLNLYG 105 (130)
T ss_pred HH----------HhCCCEEeeecCCchHHHHHH
Confidence 22 146899999999999975543
No 112
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=59.56 E-value=18 Score=33.25 Aligned_cols=21 Identities=10% Similarity=0.148 Sum_probs=16.3
Q ss_pred HHHHhHhcCcCCCCCeeehhh
Q 009581 228 IEGLERSLGFDPNDPIVPFVV 248 (531)
Q Consensus 228 ~egv~k~lgv~~~dpVv~~~~ 248 (531)
++.+...+|++++++||+|.-
T Consensus 83 ~~~~~~~~GI~~~~~vVvY~~ 103 (138)
T cd01445 83 FAAMFEAKGIDLDKHLIATDG 103 (138)
T ss_pred HHHHHHHcCCCCCCeEEEECC
Confidence 555566689999999998763
No 113
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=57.01 E-value=8.4 Score=34.77 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=29.9
Q ss_pred EEEEeCCCc-HHHHHHHHHHHc----cCCceEEecchHHHH
Q 009581 357 VIVMDADGT-RSKGIARSLRKL----GVMRAFLVQGGFQSW 392 (531)
Q Consensus 357 IVVyC~sG~-RS~~AA~~L~~l----Gf~nV~~L~GG~~aW 392 (531)
|+++|.+.. ||..|..+|+.+ +-.++.+...|+.+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 678998654 999998888887 667889999998877
No 114
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=56.97 E-value=28 Score=33.75 Aligned_cols=81 Identities=20% Similarity=0.228 Sum_probs=34.1
Q ss_pred EEEeCChhhhhhcCCccccc---cccccccccCcccccchhhhhhcCchhhHHHHHHHHHhhhcccCCCcEEEEEeCCCc
Q 009581 289 LIDVRHEDLRERDGIPDLRR---GARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGT 365 (531)
Q Consensus 289 LIDVRs~eEf~~GHIPGAi~---a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~algI~~Lk~l~kd~~IVVyC~sG~ 365 (531)
||=.-+..|+..-.+|+-.. ..-..|.++|..+..-. +.+.+.+.+..+. . .+..+++|+++|.+|.
T Consensus 75 Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aP------d~~~~~~i~~eL~-~---~L~~g~~V~vHC~GGl 144 (168)
T PF05706_consen 75 VVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAP------DFAAAWQILEELA-A---RLENGRKVLVHCRGGL 144 (168)
T ss_dssp EEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---------HHHHHHHHHHHH-H---HHHTT--EEEE-SSSS
T ss_pred EEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCC------CHHHHHHHHHHHH-H---HHHcCCEEEEECCCCC
Confidence 44466777777777775421 12234557776543311 1111111221111 1 1236789999999886
Q ss_pred -HHHH-HHHHHHHccC
Q 009581 366 -RSKG-IARSLRKLGV 379 (531)
Q Consensus 366 -RS~~-AA~~L~~lGf 379 (531)
|+.. ||..|-.+|-
T Consensus 145 GRtGlvAAcLLl~L~~ 160 (168)
T PF05706_consen 145 GRTGLVAACLLLELGD 160 (168)
T ss_dssp SHHHHHHHHHHHHH-S
T ss_pred CHHHHHHHHHHHHHcC
Confidence 6654 6777777663
No 115
>PLN02727 NAD kinase
Probab=56.91 E-value=22 Score=42.79 Aligned_cols=83 Identities=8% Similarity=0.156 Sum_probs=44.2
Q ss_pred CCccCHHHHHHHHhCCCCc-EEEEeCChhhhhhcCCcc----ccccccccccccCcccccchhhhhhcCchhhHHHHHHH
Q 009581 269 SGDLSPKSTLELLRGKENA-VLIDVRHEDLRERDGIPD----LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAA 343 (531)
Q Consensus 269 ~~~ISp~El~elL~~~~~a-vLIDVRs~eEf~~GHIPG----Ai~a~~~~~~nIPl~eL~~~~~~Llk~p~eL~~~L~al 343 (531)
.++++++++..+.+ .+. .||+.|+..|- .+..+- |....-..+.++|+..... +.++.+++....+
T Consensus 266 sgQpspe~la~LA~--~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs~~~a------pt~EqVe~fa~~l 336 (986)
T PLN02727 266 GGQVTEEGLKWLLE--KGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVEVRTA------PSAEQVEKFASLV 336 (986)
T ss_pred eCCCCHHHHHHHHH--CCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecCCCCC------CCHHHHHHHHHHH
Confidence 35899999988764 344 79999997762 222221 1111223444777532111 1112222222111
Q ss_pred HHhhhcccCCCcEEEEEeCCCcH
Q 009581 344 VIRNLKIVQDRSKVIVMDADGTR 366 (531)
Q Consensus 344 gI~~Lk~l~kd~~IVVyC~sG~R 366 (531)
.- .-.+||++||++|.|
T Consensus 337 ~~------slpkPVLvHCKSGar 353 (986)
T PLN02727 337 SD------SSKKPIYLHSKEGVW 353 (986)
T ss_pred Hh------hcCCCEEEECCCCCc
Confidence 00 136899999999983
No 116
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=55.25 E-value=15 Score=38.74 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=26.6
Q ss_pred ccCHHHHHHHHhCCCCcEEEEeCChhhhhh---cCCc
Q 009581 271 DLSPKSTLELLRGKENAVLIDVRHEDLRER---DGIP 304 (531)
Q Consensus 271 ~ISp~El~elL~~~~~avLIDVRs~eEf~~---GHIP 304 (531)
.+...++.+.+.+ .+..+||+|+..+|.. ||||
T Consensus 137 g~gKt~Ll~~L~~-~~~~VvDlr~~a~hrGs~fG~~~ 172 (311)
T TIGR03167 137 GSGKTELLHALAN-AGAQVLDLEGLANHRGSSFGALG 172 (311)
T ss_pred CcCHHHHHHHHhc-CCCeEEECCchHHhcCcccCCCC
Confidence 3667788888853 5689999999999997 7777
No 117
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=54.58 E-value=45 Score=29.39 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=20.3
Q ss_pred CCcEEEEEeCCCc-HHHH--HHHHHHHccCC
Q 009581 353 DRSKVIVMDADGT-RSKG--IARSLRKLGVM 380 (531)
Q Consensus 353 kd~~IVVyC~sG~-RS~~--AA~~L~~lGf~ 380 (531)
++.+|+|+|..|. ||.. +++++...|++
T Consensus 72 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 102 (133)
T PF00782_consen 72 EGGKVLVHCKAGLSRSGAVAAAYLMKKNGMS 102 (133)
T ss_dssp TTSEEEEEESSSSSHHHHHHHHHHHHHHTSS
T ss_pred ccceeEEEeCCCcccchHHHHHHHHHHcCCC
Confidence 6789999999987 7754 44455666764
No 118
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=53.02 E-value=17 Score=34.08 Aligned_cols=41 Identities=24% Similarity=0.383 Sum_probs=24.0
Q ss_pred CCcEEEEEe-C----CCcHHHHHHHHHHHccCCceEEecchHHHHH
Q 009581 353 DRSKVIVMD-A----DGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (531)
Q Consensus 353 kd~~IVVyC-~----sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~ 393 (531)
++..++++| . .|..-..++.+|+.+|..+..+|+||-....
T Consensus 99 ~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs~l 144 (170)
T PF09992_consen 99 ADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSSTL 144 (170)
T ss_dssp TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG--E
T ss_pred CCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcceEE
Confidence 444565555 4 3677788999999999999999999976543
No 119
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=52.90 E-value=7.1 Score=40.67 Aligned_cols=36 Identities=6% Similarity=0.001 Sum_probs=27.7
Q ss_pred cccccccchhhhhhhhhcc-ccchhhhhhhHHHHHhhc
Q 009581 91 SSMIKGENAVKSSLDTITS-SLTSIKKSTSEAVDNVVS 127 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~-~~~~a~k~~r~~~d~~~~ 127 (531)
..||++|||... .+..+. .+..|.+||+.+|.|+..
T Consensus 272 ~~Iya~GD~~~~-~~~~~~~~~~~A~~~g~~~a~ni~~ 308 (364)
T TIGR03169 272 PHVFAAGDCAVI-TDAPRPKAGVYAVRQAPILAANLRA 308 (364)
T ss_pred CCEEEeeeeeec-CCCCCCCchHHHHHhHHHHHHHHHH
Confidence 469999999976 333333 367799999999999873
No 120
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=47.43 E-value=30 Score=32.79 Aligned_cols=50 Identities=24% Similarity=0.309 Sum_probs=33.0
Q ss_pred CCCcEEEEEeCCCc---HHHHHHHHHHHccCCceEE--ecc----------hHHHHHHcCCceecc
Q 009581 352 QDRSKVIVMDADGT---RSKGIARSLRKLGVMRAFL--VQG----------GFQSWVKEGLRIKEL 402 (531)
Q Consensus 352 ~kd~~IVVyC~sG~---RS~~AA~~L~~lGf~nV~~--L~G----------G~~aW~~aGLPV~~~ 402 (531)
++..+|+++|..|+ .+..+|+.|...||+ |.+ +.. -++.+++.|.++...
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 87 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTVYLVGPPEKLSEDAKQQLEILKKMGIKIIEL 87 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEEEEEESSSSTSHHHHHHHHHHHHTT-EEESS
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEEEEEeccccCCHHHHHHHHHHHhcCCcEeec
Confidence 56789999998876 678899999999995 665 321 134556666666553
No 121
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=42.54 E-value=26 Score=31.73 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=28.0
Q ss_pred EEEEeCCCc-HHHHHHHHHHHccCCceEEecchHHHH
Q 009581 357 VIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 392 (531)
Q Consensus 357 IVVyC~sG~-RS~~AA~~L~~lGf~nV~~L~GG~~aW 392 (531)
|+++|.+.. ||..|..+|+++.-.++.+..-|+.+|
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCC
Confidence 578897654 999999999876544677888888877
No 122
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=41.91 E-value=14 Score=39.90 Aligned_cols=37 Identities=0% Similarity=-0.050 Sum_probs=27.9
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhc
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVS 127 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~ 127 (531)
..|||+|||........-..+..|.+||+.+|.|+..
T Consensus 309 ~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~ 345 (424)
T PTZ00318 309 PNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNN 345 (424)
T ss_pred CCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 4699999999762111233477899999999999985
No 123
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=40.65 E-value=1.1e+02 Score=31.83 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=27.6
Q ss_pred CCCcEEEEEeCCCcHHHHHHHHHHHccCCceE
Q 009581 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAF 383 (531)
Q Consensus 352 ~kd~~IVVyC~sG~RS~~AA~~L~~lGf~nV~ 383 (531)
.++..+++||..-.........|++.||.++.
T Consensus 186 kpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 186 KPGGVVVVYSPTVEQVEKTVEALRERGFVDIE 217 (256)
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHhcCccchh
Confidence 47889999999888888999999999997643
No 124
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=39.81 E-value=48 Score=33.05 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=24.8
Q ss_pred CcEEEEEeCCCc---HHHHHHHHHHHccCCceEEe
Q 009581 354 RSKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 385 (531)
Q Consensus 354 d~~IVVyC~sG~---RS~~AA~~L~~lGf~nV~~L 385 (531)
..+|+|+|..|+ ..+.+|+.|...||+ |.++
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v~ 82 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTVL 82 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEEE
Confidence 568999997654 789999999999985 5533
No 125
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=38.72 E-value=45 Score=33.97 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=24.4
Q ss_pred cEEEEEeCCC---cHHHHHHHHHHHccCCceEEe
Q 009581 355 SKVIVMDADG---TRSKGIARSLRKLGVMRAFLV 385 (531)
Q Consensus 355 ~~IVVyC~sG---~RS~~AA~~L~~lGf~nV~~L 385 (531)
++|+|+|..| .....+|+.|...||+ |.++
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 93 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYE-VTVC 93 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCe-EEEE
Confidence 6799999754 5888999999999994 6644
No 126
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=36.62 E-value=46 Score=29.64 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=21.0
Q ss_pred CCCcEEEEEeCCCc-HHHH--HHHHHHHccCC
Q 009581 352 QDRSKVIVMDADGT-RSKG--IARSLRKLGVM 380 (531)
Q Consensus 352 ~kd~~IVVyC~sG~-RS~~--AA~~L~~lGf~ 380 (531)
..+.+|+|+|..|. ||.. +++.+...|++
T Consensus 76 ~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~ 107 (138)
T smart00195 76 KKGGKVLVHCQAGVSRSATLIIAYLMKYRNLS 107 (138)
T ss_pred cCCCeEEEECCCCCchHHHHHHHHHHHHhCCC
Confidence 36789999999986 7754 44556667764
No 127
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=35.22 E-value=25 Score=38.07 Aligned_cols=64 Identities=9% Similarity=0.005 Sum_probs=44.0
Q ss_pred ccccccccchhhhhhhhhccccchhhhhhhHHHHHhhcccc--ccccCccccccccccccccchhhhhhh
Q 009581 90 SSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVF--SSIDQTGGSAGSKLTNFSTDLKEASSK 157 (531)
Q Consensus 90 ~~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~--~~~~~~~~~~~~~~~~~~tgl~e~~~~ 157 (531)
.--|||+||.++- ..-+|- -|...||..|+++++|.. ..|+++--|----|.-...||+|..+.
T Consensus 331 vp~vyAvGDIl~~-kpELTP---vAIqsGrlLa~Rlf~gs~q~~dy~~V~TTVFTPLEy~c~GlsEE~Ai 396 (503)
T KOG4716|consen 331 VPYVYAVGDILED-KPELTP---VAIQSGRLLARRLFAGSTQLMDYDDVATTVFTPLEYGCVGLSEEDAI 396 (503)
T ss_pred CCceEEecceecC-Ccccch---hhhhhchHHHHHHhcCcceeeeccCCceeeecchhccccCCCHHHHH
Confidence 3579999999998 555554 477889999999997653 345553322222266668899998543
No 128
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=34.13 E-value=1.8e+02 Score=29.28 Aligned_cols=27 Identities=11% Similarity=0.297 Sum_probs=20.7
Q ss_pred CcEEEEEeCCCcHHHHHHH-HHHHccCC
Q 009581 354 RSKVIVMDADGTRSKGIAR-SLRKLGVM 380 (531)
Q Consensus 354 d~~IVVyC~sG~RS~~AA~-~L~~lGf~ 380 (531)
.+..+++|.+...+...+. ..++.||.
T Consensus 147 ~~~~v~vagDD~~Ak~~v~~L~~~iG~~ 174 (211)
T COG2085 147 GRRDVLVAGDDAEAKAVVAELAEDIGFR 174 (211)
T ss_pred CceeEEEecCcHHHHHHHHHHHHhcCcc
Confidence 5789999998887766554 55778996
No 129
>PRK10126 tyrosine phosphatase; Provisional
Probab=33.93 E-value=47 Score=30.73 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=27.8
Q ss_pred cEEEEEeCCCc-HHHHHHHHHHHccCCceEEecchHHHH
Q 009581 355 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 392 (531)
Q Consensus 355 ~~IVVyC~sG~-RS~~AA~~L~~lGf~nV~~L~GG~~aW 392 (531)
.+|+++|.... ||..|..+|+.++- ++.+..-|...|
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~~-~~~v~SAG~~~~ 40 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYHP-ELKVESAGLGAL 40 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEeeeccCC
Confidence 47999997654 99999989988763 466666777655
No 130
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=32.91 E-value=68 Score=31.53 Aligned_cols=33 Identities=30% Similarity=0.454 Sum_probs=25.5
Q ss_pred CCCcEEEEEeCCC---cHHHHHHHHHHHccCCceEEe
Q 009581 352 QDRSKVIVMDADG---TRSKGIARSLRKLGVMRAFLV 385 (531)
Q Consensus 352 ~kd~~IVVyC~sG---~RS~~AA~~L~~lGf~nV~~L 385 (531)
++.++|+|+|..| .....+|+.|...|+ +|+.+
T Consensus 43 ~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v-~V~~~ 78 (205)
T TIGR00197 43 PLAGHVIIFCGPGNNGGDGFVVARHLKGFGV-EVFLL 78 (205)
T ss_pred CCCCeEEEEECCCCCccHHHHHHHHHHhCCC-EEEEE
Confidence 3457899999754 588889999988777 47765
No 131
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=31.31 E-value=1.3e+02 Score=28.55 Aligned_cols=47 Identities=28% Similarity=0.443 Sum_probs=31.7
Q ss_pred hhhcccCCCcEEEEEeCCCc--HHHHHHHHHHH---ccCCceEEecchHHHH
Q 009581 346 RNLKIVQDRSKVIVMDADGT--RSKGIARSLRK---LGVMRAFLVQGGFQSW 392 (531)
Q Consensus 346 ~~Lk~l~kd~~IVVyC~sG~--RS~~AA~~L~~---lGf~nV~~L~GG~~aW 392 (531)
+-++.++++..+|+.|..|. .|...|..|.. .|..++..+-||-.++
T Consensus 59 ~il~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~ 110 (155)
T PF02590_consen 59 RILKKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGL 110 (155)
T ss_dssp HHHCTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB-
T ss_pred HHHhhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 33455668888999998886 77778877755 6887899999986543
No 132
>PRK10565 putative carbohydrate kinase; Provisional
Probab=31.14 E-value=68 Score=36.09 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=25.3
Q ss_pred CCCcEEEEEeCCCc---HHHHHHHHHHHccCCceEEe
Q 009581 352 QDRSKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 385 (531)
Q Consensus 352 ~kd~~IVVyC~sG~---RS~~AA~~L~~lGf~nV~~L 385 (531)
++.++|+|+|..|+ ....+|+.|...||+ |.++
T Consensus 58 ~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~~-V~v~ 93 (508)
T PRK10565 58 PDARHWLVLCGHGNNGGDGYVVARLAQAAGID-VTLL 93 (508)
T ss_pred CCCCeEEEEEcCCCchHHHHHHHHHHHHCCCc-eEEE
Confidence 34567999997654 778899999999995 5543
No 133
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=30.01 E-value=80 Score=28.35 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=26.3
Q ss_pred EEEEEeCCCc-HHHHHHHHHHHccCCceEEecchHH
Q 009581 356 KVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQ 390 (531)
Q Consensus 356 ~IVVyC~sG~-RS~~AA~~L~~lGf~nV~~L~GG~~ 390 (531)
+|+++|.... ||..|..+|+.++-.++.+...|..
T Consensus 2 ~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~ 37 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLE 37 (126)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCC
Confidence 6899997654 9998888898876556666666654
No 134
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=28.32 E-value=68 Score=29.74 Aligned_cols=37 Identities=22% Similarity=0.153 Sum_probs=27.3
Q ss_pred cEEEEEeCCCc-HHHHHHHHHHHccCCceEEecchHHHH
Q 009581 355 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 392 (531)
Q Consensus 355 ~~IVVyC~sG~-RS~~AA~~L~~lGf~nV~~L~GG~~aW 392 (531)
++|+++|.... ||..|..+|+.+.- ++.+...|..+|
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~-~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLP-GVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEcccccCC
Confidence 47999997554 99988888887653 466677777655
No 135
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=27.51 E-value=31 Score=36.08 Aligned_cols=32 Identities=16% Similarity=0.167 Sum_probs=26.2
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhc
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVS 127 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~ 127 (531)
..||++|||..- . ..+..|.+||+.+|.++..
T Consensus 316 ~~vyaiGD~~~~-~----~~~~~A~~~g~~aa~~i~~ 347 (352)
T PRK12770 316 EGVFAAGDVVTG-P----SKIGKAIKSGLRAAQSIHE 347 (352)
T ss_pred CCEEEEcccccC-c----chHHHHHHHHHHHHHHHHH
Confidence 579999999763 2 3578999999999999873
No 136
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=27.25 E-value=89 Score=31.08 Aligned_cols=30 Identities=23% Similarity=0.214 Sum_probs=24.3
Q ss_pred EEEEEeCCCc-HHHHHHHHHHHccCCceEEec
Q 009581 356 KVIVMDADGT-RSKGIARSLRKLGVMRAFLVQ 386 (531)
Q Consensus 356 ~IVVyC~sG~-RS~~AA~~L~~lGf~nV~~L~ 386 (531)
++-++|.+.+ ||..|-..|++.|| +|..+-
T Consensus 3 ~~avVCasN~NRSMEAH~~L~~~G~-~V~SfG 33 (195)
T PF04722_consen 3 RFAVVCASNQNRSMEAHNVLKKAGF-NVRSFG 33 (195)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHTT--EEEEEE
T ss_pred eEEEEccCCCCcCHHHHHHHHHCCC-ceEeec
Confidence 5789998765 99999999999999 687653
No 137
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=26.83 E-value=90 Score=34.78 Aligned_cols=44 Identities=14% Similarity=0.174 Sum_probs=30.9
Q ss_pred cEEEEEeCCCc---HHHHHHHHHHHccCCceEEe-cch---------HHHHHHcCCce
Q 009581 355 SKVIVMDADGT---RSKGIARSLRKLGVMRAFLV-QGG---------FQSWVKEGLRI 399 (531)
Q Consensus 355 ~~IVVyC~sG~---RS~~AA~~L~~lGf~nV~~L-~GG---------~~aW~~aGLPV 399 (531)
++|+|+|..|+ ....+|+.|...||+ |.++ .+. +..|...|.++
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~-V~v~~~~~~~~~~~~~~~~~~~~~g~~~ 116 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHHFGYK-PSICYPKRTDKPLYNGLVTQLESLSVPF 116 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCc-eEEEEECCCCCHHHHHHHHHHHHcCCce
Confidence 68999997654 778899999999995 5543 221 34566666554
No 138
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=26.53 E-value=3.6e+02 Score=25.62 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=17.0
Q ss_pred CCCcEEEEEeCCCc-HHHH-HHHHHHH
Q 009581 352 QDRSKVIVMDADGT-RSKG-IARSLRK 376 (531)
Q Consensus 352 ~kd~~IVVyC~sG~-RS~~-AA~~L~~ 376 (531)
.++.+|+|+|..|. ||.. ++..|.+
T Consensus 96 ~~g~~V~VHC~aGigRSgt~~a~yL~~ 122 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPILVALALVE 122 (166)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35889999999886 7755 3334433
No 139
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=26.37 E-value=33 Score=37.78 Aligned_cols=103 Identities=11% Similarity=0.008 Sum_probs=59.7
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhhccccccccCcccccccc--ccccccchhhhhhhcccceehhhhh
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSK--LTNFSTDLKEASSKATVAAVDVLRN 168 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~~g~~~~~~~~~~~~~~~--~~~~~tgl~e~~~~~~~~~~d~l~~ 168 (531)
..||++||++-- -.+ |--|--||=.++..+.| .....+--.=-++.- =.++..|++|..+|..|++|-+-|-
T Consensus 345 P~i~~IGDv~~g--pML---AhkAeeegI~~VE~i~g-~~~hv~ynciP~v~ythPEvawVG~TEeqlkeegi~y~vgkf 418 (506)
T KOG1335|consen 345 PHIYAIGDVTLG--PML---AHKAEEEGIAAVEGIAG-GHGHVDYNCIPSVVYTHPEVAWVGKTEEQLKEEGIKYKVGKF 418 (506)
T ss_pred CceEEecccCCc--chh---hhhhhhhchhheeeecc-cCcccccCCCCceeecccceeeeccchhhHHhcCcceEeeec
Confidence 479999999754 111 33455566666676663 332222222111111 3388999999999999999955555
Q ss_pred hhhcccceeccCCceeeEccCCcccCCCchhHhhhhhhhcccceeee
Q 009581 169 TIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWR 215 (531)
Q Consensus 169 ~~~~~e~~~~~~~~~~~y~~G~~~~~lp~~v~kl~~~~e~~tg~ilg 215 (531)
-+.+.-...++.-. .... |+ +.+..|.+|||
T Consensus 419 pF~aNsRaktn~d~---------eg~v-----Kv--l~d~~tdkiLG 449 (506)
T KOG1335|consen 419 PFSANSRAKTNNDT---------EGFV-----KV--LADKETDKILG 449 (506)
T ss_pred cccccchhhccCCc---------ccee-----EE--EecCCCCcEEE
Confidence 55444333331110 1122 55 56778889888
No 140
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=25.59 E-value=2.9e+02 Score=29.58 Aligned_cols=43 Identities=16% Similarity=0.092 Sum_probs=32.8
Q ss_pred CCcEEEEEeCCCcHHHHHHHHHHHccCCceEEecchHHHHHHcC
Q 009581 353 DRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (531)
Q Consensus 353 kd~~IVVyC~sG~RS~~AA~~L~~lGf~nV~~L~GG~~aW~~aG 396 (531)
++++|+++ ..|..+..++..|...|+.++.++++..-.+.+.+
T Consensus 134 ~~~~Vlvv-G~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~ 176 (376)
T PRK08762 134 LEARVLLI-GAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQ 176 (376)
T ss_pred hcCcEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhc
Confidence 35666666 44566667999999999999999999877666544
No 141
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=25.56 E-value=73 Score=30.54 Aligned_cols=27 Identities=30% Similarity=0.236 Sum_probs=19.1
Q ss_pred CCcEEEEEeCCCc-HHHH--HHHHHHHccC
Q 009581 353 DRSKVIVMDADGT-RSKG--IARSLRKLGV 379 (531)
Q Consensus 353 kd~~IVVyC~sG~-RS~~--AA~~L~~lGf 379 (531)
+..+|+|+|..|. ||.. +||.|...|.
T Consensus 104 ~g~kVvVHC~~GigRSgtviaA~lm~~~~~ 133 (180)
T COG2453 104 KGKKVVVHCQGGIGRSGTVIAAYLMLYGGL 133 (180)
T ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHcCC
Confidence 5669999999886 6643 4566666454
No 142
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=24.66 E-value=64 Score=29.26 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=27.6
Q ss_pred EEEEEeCCCc-HHHHHHHHHHHccCC-ceEEecchHHHH
Q 009581 356 KVIVMDADGT-RSKGIARSLRKLGVM-RAFLVQGGFQSW 392 (531)
Q Consensus 356 ~IVVyC~sG~-RS~~AA~~L~~lGf~-nV~~L~GG~~aW 392 (531)
+|+++|.+.. ||..|..+|+.+.-+ ++.+...|...+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 6899997654 999888888876543 677777887543
No 143
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=23.44 E-value=1.1e+02 Score=34.91 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=24.2
Q ss_pred cEEEEEeCCCc---HHHHHHHHHHHccCCceEEe
Q 009581 355 SKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 385 (531)
Q Consensus 355 ~~IVVyC~sG~---RS~~AA~~L~~lGf~nV~~L 385 (531)
++|+|+|..|+ ....+|+.|...||+ |.++
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~ 168 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVC 168 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEE
Confidence 67999997654 778899999999995 6644
No 144
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=23.34 E-value=43 Score=33.16 Aligned_cols=32 Identities=3% Similarity=-0.035 Sum_probs=25.3
Q ss_pred cccccccchhhhhhhhhccccchhhhhhhHHHHHhh
Q 009581 91 SSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVV 126 (531)
Q Consensus 91 ~~i~a~gda~~~~~~~~t~~~~~a~k~~r~~~d~~~ 126 (531)
..||++|||..... ..+..|..||+.||.++.
T Consensus 266 ~~vya~GD~~~~~~----~~~~~A~~~g~~aa~~i~ 297 (300)
T TIGR01292 266 PGVFAAGDVRDKGY----RQAVTAAGDGCIAALSAE 297 (300)
T ss_pred CCEEEeecccCcch----hhhhhhhhhHHHHHHHHH
Confidence 45999999997312 347789999999999876
No 145
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=22.54 E-value=90 Score=27.86 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=13.9
Q ss_pred HHHHHHHHhCCCCcEEEEeCC
Q 009581 274 PKSTLELLRGKENAVLIDVRH 294 (531)
Q Consensus 274 p~El~elL~~~~~avLIDVRs 294 (531)
.+++.+++...+=-+|||||.
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~ 22 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRL 22 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECC
Confidence 456666665434448999996
No 146
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=21.88 E-value=1.1e+02 Score=26.62 Aligned_cols=26 Identities=15% Similarity=0.422 Sum_probs=19.1
Q ss_pred CcEEEEEeCCCcHHHHHHHHH----HHccC
Q 009581 354 RSKVIVMDADGTRSKGIARSL----RKLGV 379 (531)
Q Consensus 354 d~~IVVyC~sG~RS~~AA~~L----~~lGf 379 (531)
.++|++.|.+|..|..++..+ ++.|+
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi 32 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGV 32 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCC
Confidence 468999999999777666654 44555
No 147
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=20.57 E-value=67 Score=34.15 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=29.9
Q ss_pred CccCHHHHHHHHhC-----CCCcEEEEeCChhhhhhcCCcccc
Q 009581 270 GDLSPKSTLELLRG-----KENAVLIDVRHEDLRERDGIPDLR 307 (531)
Q Consensus 270 ~~ISp~El~elL~~-----~~~avLIDVRs~eEf~~GHIPGAi 307 (531)
..++++++.++++. ..+.+|||||++. |+-.++|+-+
T Consensus 277 ~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~gr 318 (339)
T PRK07688 277 EEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDGR 318 (339)
T ss_pred CccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCCC
Confidence 46899999988832 3578999999988 9989998664
No 148
>PRK13530 arsenate reductase; Provisional
Probab=20.27 E-value=1.6e+02 Score=26.94 Aligned_cols=35 Identities=9% Similarity=-0.009 Sum_probs=25.2
Q ss_pred cEEEEEeCCCc-HHHHHHHHHHHccCCceEEecchH
Q 009581 355 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGF 389 (531)
Q Consensus 355 ~~IVVyC~sG~-RS~~AA~~L~~lGf~nV~~L~GG~ 389 (531)
++|+++|.+.. ||..|..+|+.++-.++.+...|.
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~ 39 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGI 39 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCC
Confidence 57999997654 998888888765434566666665
Done!