Query 009583
Match_columns 531
No_of_seqs 94 out of 127
Neff 3.3
Searched_HMMs 46136
Date Thu Mar 28 14:52:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009583.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009583hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06886 TPX2: Targeting prote 99.5 2.4E-14 5.3E-19 113.9 6.8 54 386-439 1-57 (57)
2 PF10595 UPF0564: Uncharacteri 61.4 10 0.00022 39.8 4.2 55 379-443 4-58 (356)
3 KOG2891 Surface glycoprotein [ 59.2 14 0.00031 39.1 4.8 45 384-428 382-427 (445)
4 PF12214 TPX2_importin: Cell c 48.0 18 0.00039 35.5 3.2 66 377-470 66-131 (176)
5 PF13815 Dzip-like_N: Iguana/D 27.7 1.5E+02 0.0033 26.5 5.6 45 387-432 73-117 (118)
6 PF00769 ERM: Ezrin/radixin/mo 15.0 3.7E+02 0.0081 27.3 5.9 32 398-430 37-68 (246)
7 PF07946 DUF1682: Protein of u 13.9 2.9E+02 0.0062 28.9 4.9 8 383-390 249-256 (321)
8 KOG2412 Nuclear-export-signal 13.7 3.4E+02 0.0074 31.4 5.6 32 398-429 240-271 (591)
9 TIGR01069 mutS2 MutS2 family p 13.5 3.5E+02 0.0076 31.9 5.9 19 398-416 547-565 (771)
10 KOG0241 Kinesin-like protein [ 13.3 3.8E+02 0.0083 33.4 6.0 39 398-444 592-630 (1714)
No 1
>PF06886 TPX2: Targeting protein for Xklp2 (TPX2); InterPro: IPR009675 This family represents a conserved region approximately 60 residues long within the eukaryotic targeting protein for Xklp2 (TPX2). Xklp2 is a kinesin-like protein localised on centrosomes throughout the cell cycle and on spindle pole microtubules during metaphase. In Xenopus, it has been shown that Xklp2 protein is required for centrosome separation and maintenance of spindle bi-polarity []. TPX2 is a microtubule-associated protein that mediates the binding of the C-terminal domain of Xklp2 to microtubules. It is phosphorylated during mitosis in a microtubule-dependent way [].
Probab=99.52 E-value=2.4e-14 Score=113.88 Aligned_cols=54 Identities=50% Similarity=0.739 Sum_probs=53.1
Q ss_pred cchHHHHHHHHH---hHHHhhhhhHHHHHhHHHHHhHHHHHHHHHHhhhccccccCC
Q 009583 386 LRTEERAARRKE---KLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTLCFKARPL 439 (531)
Q Consensus 386 ~ksdeRAekRKE---KLEEK~~AkE~Ek~~lqak~KEe~EaeIKkLRksL~fKA~Pm 439 (531)
|+||+||++|+| +|+||.+++|.++.+++++.+++++++|++||++|+|||+||
T Consensus 1 l~t~~RA~~R~eF~~kl~EK~~~~e~~~~~~e~~~~e~ee~eik~LRk~lv~kA~Pm 57 (57)
T PF06886_consen 1 LHTDERAEERKEFDKKLEEKEKAKEAEKEEREAKQKEEEEEEIKQLRKELVFKAQPM 57 (57)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 789999999998 999999999999999999999999999999999999999998
No 2
>PF10595 UPF0564: Uncharacterised protein family UPF0564; InterPro: IPR019579 This entry represents proteins with no known function.
Probab=61.38 E-value=10 Score=39.80 Aligned_cols=55 Identities=25% Similarity=0.397 Sum_probs=30.3
Q ss_pred CCCCCCccchHHHHHHHHHhHHHhhhhhHHHHHhHHHHHhHHHHHHHHHHhhhccccccCCCccc
Q 009583 379 NSFTPFRLRTEERAARRKEKLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTLCFKARPLPHFY 443 (531)
Q Consensus 379 ~~~s~f~~ksdeRAekRKEKLEEK~~AkE~Ek~~lqak~KEe~EaeIKkLRksL~fKA~PmP~FY 443 (531)
+++-+|.+ ..|.++++++.---....|.+...++.+ +.|++..+ -|+|+|+|.+-
T Consensus 4 TVP~PF~m--t~RE~~kk~~~~~~~~~~e~~~~~~~~~---~ee~e~~k-----~FrA~pVP~~v 58 (356)
T PF10595_consen 4 TVPKPFQM--TLREEEKKEKASKSQSDLEQEKKELKKQ---EEEAECKK-----KFRANPVPAHV 58 (356)
T ss_pred CCCCCCCc--cHHHHhccchhhhhHHHHHHHHHHHHHH---HHHHHhcc-----CCCCCCCCchh
Confidence 34557777 7888877652111112333444444332 34555542 49999999843
No 3
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=59.15 E-value=14 Score=39.13 Aligned_cols=45 Identities=31% Similarity=0.468 Sum_probs=35.8
Q ss_pred Ccc-chHHHHHHHHHhHHHhhhhhHHHHHhHHHHHhHHHHHHHHHH
Q 009583 384 FRL-RTEERAARRKEKLEEKFNANQIQKLQKQVTLKEKAETEIRKL 428 (531)
Q Consensus 384 f~~-ksdeRAekRKEKLEEK~~AkE~Ek~~lqak~KEe~EaeIKkL 428 (531)
|-| +-+-|.++|+.|-+||++|.++-..+||.+.+|++.+-+--|
T Consensus 382 f~fekieareerrkqkeeeklk~e~qkikeleek~~eeedal~~al 427 (445)
T KOG2891|consen 382 FEFEKIEAREERRKQKEEEKLKAEEQKIKELEEKIKEEEDALLLAL 427 (445)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 556688888888899999999999999999999877654433
No 4
>PF12214 TPX2_importin: Cell cycle regulated microtubule associated protein; InterPro: IPR022021 This domain is found in eukaryotes. This domain is typically between 127 to 182 amino acids in length. This domain is found associated with PF06886 from PFAM. This domain is found in the protein TPX2 (a.k.a p100) which is involved in cell cycling. It is only expressed between the start of the S phase and completion of cytokinesis. The microtubule-associated protein TPX2 has been reported to be crucial for mitotic spindle formation. This domain is close to the C-terminal of TPX2. The protein importin alpha regulates the activity of TPX2 by binding to the nuclear localisation signal in this domain.
Probab=48.03 E-value=18 Score=35.49 Aligned_cols=66 Identities=26% Similarity=0.400 Sum_probs=43.6
Q ss_pred CCCCCCCCccchHHHHHHHHHhHHHhhhhhHHHHHhHHHHHhHHHHHHHHHHhhhccccccCCCcccccCCCCCCCCCCC
Q 009583 377 SPNSFTPFRLRTEERAARRKEKLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTLCFKARPLPHFYKERAIPKSQMNKD 456 (531)
Q Consensus 377 sp~~~s~f~~ksdeRAekRKEKLEEK~~AkE~Ek~~lqak~KEe~EaeIKkLRksL~fKA~PmP~FY~~~~~pK~~~kK~ 456 (531)
-|+.+.+|.|++++||..|.. .....+ + ..+|+++|...... .+-..+++-.
T Consensus 66 ~~T~p~~F~L~T~~Ra~~r~~----~~~~~~------------~----------~~~~~srp~ki~~~--~~~~p~~~~~ 117 (176)
T PF12214_consen 66 PPTEPQEFHLETEERAQQRSS----SVSSSE------------E----------QFNFHSRPCKILED--VPGVPEKKVL 117 (176)
T ss_pred CCCcccCceeehhhhhhcccc----ccccch------------h----------hcccccCccccccC--CCCCcccccc
Confidence 455678999999999998853 111000 0 02688888833333 3445556777
Q ss_pred CCCCCCCCCCCCcc
Q 009583 457 PPTRPQSPKLTAST 470 (531)
Q Consensus 457 p~TrpkSPkl~~~~ 470 (531)
++|.|+||++....
T Consensus 118 ~~t~p~sp~~~~k~ 131 (176)
T PF12214_consen 118 PVTVPKSPAFALKN 131 (176)
T ss_pred ccCCCCChhhhccc
Confidence 99999999999543
No 5
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=27.69 E-value=1.5e+02 Score=26.54 Aligned_cols=45 Identities=27% Similarity=0.352 Sum_probs=34.5
Q ss_pred chHHHHHHHHHhHHHhhhhhHHHHHhHHHHHhHHHHHHHHHHhhhc
Q 009583 387 RTEERAARRKEKLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTL 432 (531)
Q Consensus 387 ksdeRAekRKEKLEEK~~AkE~Ek~~lqak~KEe~EaeIKkLRksL 432 (531)
.|-+.-...-+.|++++.+...+..+++.+.++ ..++|+.||+++
T Consensus 73 ~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~-~~~~~k~lk~E~ 117 (118)
T PF13815_consen 73 HCQEYLSSQLEQLEERLQELQQEIEKLKQKLKK-QKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence 344444444558999999999999999888876 677999999865
No 6
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=15.04 E-value=3.7e+02 Score=27.25 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=18.2
Q ss_pred hHHHhhhhhHHHHHhHHHHHhHHHHHHHHHHhh
Q 009583 398 KLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQ 430 (531)
Q Consensus 398 KLEEK~~AkE~Ek~~lqak~KEe~EaeIKkLRk 430 (531)
.|+|+.+-.+.|+..|+.+..+ .+.++.+|+.
T Consensus 37 ~Leek~k~aeeea~~Le~k~~e-aee~~~rL~~ 68 (246)
T PF00769_consen 37 ELEEKLKQAEEEAEELEQKRQE-AEEEKQRLEE 68 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 6666666666666666665433 3444444443
No 7
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=13.91 E-value=2.9e+02 Score=28.88 Aligned_cols=8 Identities=38% Similarity=0.679 Sum_probs=4.9
Q ss_pred CCccchHH
Q 009583 383 PFRLRTEE 390 (531)
Q Consensus 383 ~f~~ksde 390 (531)
.|.|+.+.
T Consensus 249 ~~~l~~e~ 256 (321)
T PF07946_consen 249 RFKLSPEA 256 (321)
T ss_pred eeeeCHHH
Confidence 55666665
No 8
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=13.74 E-value=3.4e+02 Score=31.39 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=20.0
Q ss_pred hHHHhhhhhHHHHHhHHHHHhHHHHHHHHHHh
Q 009583 398 KLEEKFNANQIQKLQKQVTLKEKAETEIRKLR 429 (531)
Q Consensus 398 KLEEK~~AkE~Ek~~lqak~KEe~EaeIKkLR 429 (531)
|..+..++.|.|+.+++...+|+++.+++.-+
T Consensus 240 k~d~~~~~~eqekiR~~eekqeee~ke~e~~~ 271 (591)
T KOG2412|consen 240 KEDEEAELQEQEKIRAEEEKQEEERKEAEEQA 271 (591)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777777777655666555555443
No 9
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=13.48 E-value=3.5e+02 Score=31.87 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=8.3
Q ss_pred hHHHhhhhhHHHHHhHHHH
Q 009583 398 KLEEKFNANQIQKLQKQVT 416 (531)
Q Consensus 398 KLEEK~~AkE~Ek~~lqak 416 (531)
.|+++....+.++.++.++
T Consensus 547 ~l~~~~~~l~~~~~~~~~~ 565 (771)
T TIGR01069 547 ELEQEMEELKERERNKKLE 565 (771)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 10
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=13.27 E-value=3.8e+02 Score=33.42 Aligned_cols=39 Identities=36% Similarity=0.383 Sum_probs=30.1
Q ss_pred hHHHhhhhhHHHHHhHHHHHhHHHHHHHHHHhhhccccccCCCcccc
Q 009583 398 KLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTLCFKARPLPHFYK 444 (531)
Q Consensus 398 KLEEK~~AkE~Ek~~lqak~KEe~EaeIKkLRksL~fKA~PmP~FY~ 444 (531)
..|||..|.|.++... |.+|.+||+-|.+--.|-|+|+.
T Consensus 592 heEeKr~ALE~Qr~~y--------E~~~eqLr~~lsPst~~~~~~~~ 630 (1714)
T KOG0241|consen 592 HEEEKRSALEEQRLMY--------ERELEQLRQQLSPSTQPQPSGMD 630 (1714)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHhhcCCCCCCCCCCCC
Confidence 4577777777665544 55899999999999999999743
Done!