Query 009583
Match_columns 531
No_of_seqs 94 out of 127
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 08:27:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009583.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009583hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmd_A CGMP dependent protein 29.7 74 0.0025 26.3 4.9 36 400-436 32-68 (72)
2 3mq9_A Bone marrow stromal ant 18.2 1.3E+02 0.0046 30.2 5.3 26 403-429 445-470 (471)
3 3a2a_A Voltage-gated hydrogen 14.0 2.3E+02 0.0079 22.5 4.4 40 385-432 6-48 (58)
4 2jng_A Cullin-7, CUL-7; P53 bi 12.5 90 0.0031 27.5 1.9 27 52-78 2-28 (105)
5 1gu4_A CAAT/enhancer binding p 11.7 5E+02 0.017 21.3 6.0 32 398-430 40-71 (78)
6 2dgc_A Protein (GCN4); basic d 11.7 3.2E+02 0.011 21.4 4.7 28 398-433 34-61 (63)
7 1zxa_A CGMP-dependent protein 10.2 2.6E+02 0.0089 22.7 3.8 30 402-432 19-48 (67)
8 2fxo_A Myosin heavy chain, car 9.8 3.8E+02 0.013 23.2 5.0 28 394-421 34-61 (129)
9 3bas_A Myosin heavy chain, str 9.5 5.6E+02 0.019 21.0 5.7 21 396-416 37-57 (89)
10 1t2k_D Cyclic-AMP-dependent tr 9.3 6.2E+02 0.021 19.2 5.8 33 398-431 26-58 (61)
No 1
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=29.71 E-value=74 Score=26.27 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=26.8
Q ss_pred HHhhhhhHHHHHhHHHHHhHHHHHHHHHHhhhc-cccc
Q 009583 400 EEKFNANQIQKLQKQVTLKEKAETEIRKLRQTL-CFKA 436 (531)
Q Consensus 400 EEK~~AkE~Ek~~lqak~KEe~EaeIKkLRksL-~fKA 436 (531)
.|.+.+++.-...|+....| ++++|+.||..| .|+.
T Consensus 32 ~eELr~kd~~I~eLEk~L~e-kd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 32 IEELRQRDALIDELELELDQ-KDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhc
Confidence 34577788777777777665 789999999887 5654
No 2
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=18.20 E-value=1.3e+02 Score=30.19 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=11.3
Q ss_pred hhhhHHHHHhHHHHHhHHHHHHHHHHh
Q 009583 403 FNANQIQKLQKQVTLKEKAETEIRKLR 429 (531)
Q Consensus 403 ~~AkE~Ek~~lqak~KEe~EaeIKkLR 429 (531)
+...|.|.+.|.++.++ .+++|++||
T Consensus 445 ~~~~~~~~~~~~~~~~~-~~~~~~~~~ 470 (471)
T 3mq9_A 445 VEELEGEITTLNHKLQD-ASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhc
Confidence 33344444444444433 444454444
No 3
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=13.99 E-value=2.3e+02 Score=22.55 Aligned_cols=40 Identities=28% Similarity=0.406 Sum_probs=17.8
Q ss_pred ccchHHHHHHHHH---hHHHhhhhhHHHHHhHHHHHhHHHHHHHHHHhhhc
Q 009583 385 RLRTEERAARRKE---KLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTL 432 (531)
Q Consensus 385 ~~ksdeRAekRKE---KLEEK~~AkE~Ek~~lqak~KEe~EaeIKkLRksL 432 (531)
.-|++++-.|=|+ +|..|.+-.|.. =-++|.||-+|++=|
T Consensus 6 ktRse~q~~kLKq~n~~L~~kv~~Le~~--------c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 6 KTRSERQLLRLKQMNVQLAAKIQHLEFS--------CSEKEQEIERLNKLL 48 (58)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 4455555555555 444444443322 223555777776533
No 4
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=12.51 E-value=90 Score=27.50 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=22.6
Q ss_pred ccccccccccchhHHHHhhhCCCchHH
Q 009583 52 WEKWSSFSSHNKYVEEAERYSRPGSVA 78 (531)
Q Consensus 52 w~k~s~f~~~n~~~ee~~~~~~pg~va 78 (531)
+.+||.|+|.+.|.+=+..-+.||..-
T Consensus 2 fr~rsdF~s~~~Ya~YVr~~l~pGM~V 28 (105)
T 2jng_A 2 SHMRSEFASGNTYALYVRDTLQPGMRV 28 (105)
T ss_dssp --CGGGSSSSHHHHHHHHHHCCTTCEE
T ss_pred CcchhhcccchhHHHHHHhcCCCccEE
Confidence 357999999999999999999999754
No 5
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=11.68 E-value=5e+02 Score=21.31 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=24.2
Q ss_pred hHHHhhhhhHHHHHhHHHHHhHHHHHHHHHHhh
Q 009583 398 KLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQ 430 (531)
Q Consensus 398 KLEEK~~AkE~Ek~~lqak~KEe~EaeIKkLRk 430 (531)
.++.+...++.|..+|+++... -+.|+..||.
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~-L~~E~~~Lr~ 71 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQ-LSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 6777777788888888887654 5667888876
No 6
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=11.68 E-value=3.2e+02 Score=21.36 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=15.5
Q ss_pred hHHHhhhhhHHHHHhHHHHHhHHHHHHHHHHhhhcc
Q 009583 398 KLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTLC 433 (531)
Q Consensus 398 KLEEK~~AkE~Ek~~lqak~KEe~EaeIKkLRksL~ 433 (531)
.|+.+....+.|...|. ++|.+||..|.
T Consensus 34 ~Le~~v~~L~~eN~~L~--------~ev~~Lr~~l~ 61 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLE--------NEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHh
Confidence 45555555555554444 47888887653
No 7
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=10.21 E-value=2.6e+02 Score=22.69 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=16.9
Q ss_pred hhhhhHHHHHhHHHHHhHHHHHHHHHHhhhc
Q 009583 402 KFNANQIQKLQKQVTLKEKAETEIRKLRQTL 432 (531)
Q Consensus 402 K~~AkE~Ek~~lqak~KEe~EaeIKkLRksL 432 (531)
-++.|+.-..+||.... +++++|.+||.-|
T Consensus 19 ~i~~Kde~I~eLE~~L~-~kd~eI~eLr~~L 48 (67)
T 1zxa_A 19 ILMLKEERIKELEKRLS-EKEEEIQELKRKL 48 (67)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 44455555555554433 3667788887544
No 8
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=9.77 E-value=3.8e+02 Score=23.24 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=19.2
Q ss_pred HHHHhHHHhhhhhHHHHHhHHHHHhHHH
Q 009583 394 RRKEKLEEKFNANQIQKLQKQVTLKEKA 421 (531)
Q Consensus 394 kRKEKLEEK~~AkE~Ek~~lqak~KEe~ 421 (531)
..+..|++++....+|++.|+...+.+.
T Consensus 34 ~~r~ele~~~~~l~~Ek~~L~~qL~~E~ 61 (129)
T 2fxo_A 34 ARRKELEEKMVSLLQEKNDLQLQVQAEQ 61 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344778888888888888777665443
No 9
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=9.53 E-value=5.6e+02 Score=20.98 Aligned_cols=21 Identities=29% Similarity=0.060 Sum_probs=15.8
Q ss_pred HHhHHHhhhhhHHHHHhHHHH
Q 009583 396 KEKLEEKFNANQIQKLQKQVT 416 (531)
Q Consensus 396 KEKLEEK~~AkE~Ek~~lqak 416 (531)
+..|++++....+|++.|+.+
T Consensus 37 rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 37 KKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 336778888888888888776
No 10
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=9.33 E-value=6.2e+02 Score=19.15 Aligned_cols=33 Identities=24% Similarity=0.177 Sum_probs=23.2
Q ss_pred hHHHhhhhhHHHHHhHHHHHhHHHHHHHHHHhhh
Q 009583 398 KLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQT 431 (531)
Q Consensus 398 KLEEK~~AkE~Ek~~lqak~KEe~EaeIKkLRks 431 (531)
.|+.+....+.+...|+..... -..++..|+.-
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~-L~~e~~~Lk~~ 58 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTL-LRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 8888888888888888876433 44456666553
Done!