Query 009583
Match_columns 531
No_of_seqs 94 out of 127
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 08:27:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009583.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009583hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eeja2 d.17.3.1 (A:1-60) Disu 5.4 1.2E+02 0.0089 21.7 1.6 12 434-445 19-30 (60)
2 d1t3ba2 d.17.3.1 (A:2-60) Disu 5.3 64 0.0046 23.4 -0.0 12 434-445 18-29 (59)
3 d2awia1 a.35.1.11 (A:2-66) Prg 5.0 1.1E+02 0.0081 22.5 1.1 13 423-435 5-17 (65)
4 d3b8ma1 d.58.60.1 (A:64-330) E 4.6 3.7E+02 0.027 23.5 4.7 36 398-433 147-182 (267)
5 d3b8pa1 d.58.60.1 (A:54-292) C 4.6 2.9E+02 0.021 24.1 3.9 37 398-434 117-153 (239)
6 d3b8oa1 d.58.60.1 (A:55-319) L 4.3 3.8E+02 0.027 23.6 4.5 36 398-433 144-179 (265)
7 d2p02a3 d.130.1.1 (A:274-417) 3.9 1.2E+02 0.0089 25.6 0.7 18 38-55 122-139 (144)
8 d1l2pa_ f.23.21.1 (A:) F1F0 AT 3.8 6.8E+02 0.049 17.7 6.0 41 392-432 18-59 (61)
9 d2ba0g2 d.101.1.1 (G:179-257) 3.5 1.6E+02 0.012 21.3 1.0 16 32-47 1-16 (79)
10 d1mxaa3 d.130.1.1 (A:232-383) 2.9 1.8E+02 0.013 24.6 0.8 18 38-55 122-139 (152)
No 1
>d1eeja2 d.17.3.1 (A:1-60) Disulfide bond isomerase, DsbC, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.37 E-value=1.2e+02 Score=21.72 Aligned_cols=12 Identities=8% Similarity=0.229 Sum_probs=9.5
Q ss_pred ccccCCCccccc
Q 009583 434 FKARPLPHFYKE 445 (531)
Q Consensus 434 fKA~PmP~FY~~ 445 (531)
.+.+|+|+||.-
T Consensus 19 V~~spi~GlyeV 30 (60)
T d1eeja2 19 IQPAPVAGMKTV 30 (60)
T ss_dssp EEECSSTTEEEE
T ss_pred EecCCCCCeEEE
Confidence 467899999963
No 2
>d1t3ba2 d.17.3.1 (A:2-60) Disulfide bond isomerase, DsbC, N-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=5.35 E-value=64 Score=23.36 Aligned_cols=12 Identities=17% Similarity=0.376 Sum_probs=9.4
Q ss_pred ccccCCCccccc
Q 009583 434 FKARPLPHFYKE 445 (531)
Q Consensus 434 fKA~PmP~FY~~ 445 (531)
...+|+|+||.-
T Consensus 18 i~~spi~GlyeV 29 (59)
T d1t3ba2 18 IKSSPISGIKTA 29 (59)
T ss_dssp CCBCSSTTEECC
T ss_pred EecCCCCCeEEE
Confidence 457899999964
No 3
>d2awia1 a.35.1.11 (A:2-66) PrgX {Enterococcus faecalis [TaxId: 1351]}
Probab=5.01 E-value=1.1e+02 Score=22.47 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=10.7
Q ss_pred HHHHHHhhhcccc
Q 009583 423 TEIRKLRQTLCFK 435 (531)
Q Consensus 423 aeIKkLRksL~fK 435 (531)
.-+|++||+|||-
T Consensus 5 ~~lkqir~elnyh 17 (65)
T d2awia1 5 SVLKQIRQELNYH 17 (65)
T ss_dssp HHHHHHHHHTTCC
T ss_pred hHHHHHHHHhhhh
Confidence 4689999999974
No 4
>d3b8ma1 d.58.60.1 (A:64-330) Enterochelin transport protein FepE {Escherichia coli [TaxId: 562]}
Probab=4.60 E-value=3.7e+02 Score=23.51 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=32.2
Q ss_pred hHHHhhhhhHHHHHhHHHHHhHHHHHHHHHHhhhcc
Q 009583 398 KLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTLC 433 (531)
Q Consensus 398 KLEEK~~AkE~Ek~~lqak~KEe~EaeIKkLRksL~ 433 (531)
.++.|.+..+.+...++.+.|+..+.+|.+|...|.
T Consensus 147 ~i~~~~~~l~~~~~~~~~~ak~~~~~~i~~l~~Al~ 182 (267)
T d3b8ma1 147 KLEIKTQFEKEKLAQDRIKMKNQLDANIQRLNYSLD 182 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999987654
No 5
>d3b8pa1 d.58.60.1 (A:54-292) Chain length determinant protein WzzB {Salmonella typhimurium [TaxId: 90371]}
Probab=4.59 E-value=2.9e+02 Score=24.11 Aligned_cols=37 Identities=14% Similarity=0.251 Sum_probs=33.0
Q ss_pred hHHHhhhhhHHHHHhHHHHHhHHHHHHHHHHhhhccc
Q 009583 398 KLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTLCF 434 (531)
Q Consensus 398 KLEEK~~AkE~Ek~~lqak~KEe~EaeIKkLRksL~f 434 (531)
.++.+.+..+.+...++...|...+.+|.+|...|..
T Consensus 117 ~i~~~~~~l~~~~~~~~~~ak~~~~~~I~~l~~AL~I 153 (239)
T d3b8pa1 117 NITLQTKTLQESLETQEVVAQEQKDLRIKQIEEALRY 153 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999999999999999886643
No 6
>d3b8oa1 d.58.60.1 (A:55-319) Lipopolysaccharide biosynthesis protein WzzE {Escherichia coli [TaxId: 562]}
Probab=4.26 E-value=3.8e+02 Score=23.60 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=30.8
Q ss_pred hHHHhhhhhHHHHHhHHHHHhHHHHHHHHHHhhhcc
Q 009583 398 KLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTLC 433 (531)
Q Consensus 398 KLEEK~~AkE~Ek~~lqak~KEe~EaeIKkLRksL~ 433 (531)
.++.+....+.+...++...|...+.+|.+|+..|.
T Consensus 144 ~i~~~~~~l~~~~~~~~~~ak~~~~~~I~~L~~AL~ 179 (265)
T d3b8oa1 144 AWAARTIQMKAQVKRQEEVAKAIYDRRMNSIEQALK 179 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999997554
No 7
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Probab=3.93 E-value=1.2e+02 Score=25.56 Aligned_cols=18 Identities=28% Similarity=0.706 Sum_probs=15.1
Q ss_pred ceeeeccccccccccccc
Q 009583 38 QSVSFGRFMSESLAWEKW 55 (531)
Q Consensus 38 ~svsfgrf~~~~l~w~k~ 55 (531)
..-.+|-|-.+.+.||+=
T Consensus 122 ~TAaYGHFGR~~f~WEk~ 139 (144)
T d2p02a3 122 RTAAYGHFGRDSFPWEVP 139 (144)
T ss_dssp GGSSSCSSSSTTCGGGSC
T ss_pred hccCccCCCCCCCCeecc
Confidence 567889999899999973
No 8
>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}
Probab=3.81 E-value=6.8e+02 Score=17.75 Aligned_cols=41 Identities=17% Similarity=0.320 Sum_probs=22.9
Q ss_pred HHHHHHhHHHhhhhhH-HHHHhHHHHHhHHHHHHHHHHhhhc
Q 009583 392 AARRKEKLEEKFNANQ-IQKLQKQVTLKEKAETEIRKLRQTL 432 (531)
Q Consensus 392 AekRKEKLEEK~~AkE-~Ek~~lqak~KEe~EaeIKkLRksL 432 (531)
|.+|...+-+-.+..- .|..++=+..+.+-|.|+.+.|.+|
T Consensus 18 A~~ra~qIveeak~~A~~Ea~rI~~~A~~eIe~E~~~A~~eL 59 (61)
T d1l2pa_ 18 ANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREEL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444433333222 3555555566677777887777766
No 9
>d2ba0g2 d.101.1.1 (G:179-257) Exosome complex exonuclease 2, ECX2 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=3.47 E-value=1.6e+02 Score=21.27 Aligned_cols=16 Identities=25% Similarity=0.146 Sum_probs=11.0
Q ss_pred ccccccceeeeccccc
Q 009583 32 PIHALGQSVSFGRFMS 47 (531)
Q Consensus 32 ~~~~l~~svsfgrf~~ 47 (531)
|++-+-.+||||.|..
T Consensus 1 Pv~~~Pv~vT~~~~~~ 16 (79)
T d2ba0g2 1 PVRDLPVSVTSLIVGN 16 (79)
T ss_dssp CBCCCCEEEEEEEETT
T ss_pred CCCCceEEEEEEEECC
Confidence 4556667788888754
No 10
>d1mxaa3 d.130.1.1 (A:232-383) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]}
Probab=2.88 E-value=1.8e+02 Score=24.61 Aligned_cols=18 Identities=33% Similarity=0.800 Sum_probs=15.2
Q ss_pred ceeeeccccccccccccc
Q 009583 38 QSVSFGRFMSESLAWEKW 55 (531)
Q Consensus 38 ~svsfgrf~~~~l~w~k~ 55 (531)
..-.+|-|-.+.+.||+=
T Consensus 122 ~TAayGHFGR~~f~WEk~ 139 (152)
T d1mxaa3 122 ETAAYGHFGREHFPWEKT 139 (152)
T ss_dssp GGGSSCSSSCSSSGGGCC
T ss_pred ccCCCCCCCCCCCCcccc
Confidence 566889999999999984
Done!