BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009584
(531 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LWS|A Chain A, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|B Chain B, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|C Chain C, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|D Chain D, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|E Chain E, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|F Chain F, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
Length = 357
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 317 MHTVSPEVNVINKDNLHRHSNAYVDQNGDIEE--DESGWETVSHLEDQDSSCSPEGSAPS 374
+HT +PEV V N +LH A D + +E+ +E+G V +L D+D CS E S
Sbjct: 278 VHT-TPEVPVSNXFHLHFDGQA-ADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGD 335
Query: 375 I-----KNRRDSNFS 384
+ RD+ F+
Sbjct: 336 AYGELDQQTRDAGFA 350
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 179 AEVEALKRESMKLREEVDDERKML--------QMAEVWREERVQMKLVDAKVAVEQKYSQ 230
AE+ L E KLR E + ER++L ++ EV RE + + D A E +Y +
Sbjct: 437 AEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGE 496
Query: 231 MNKLVAELEAF 241
+ KL AE+EA
Sbjct: 497 LPKLEAEVEAL 507
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 179 AEVEALKRESMKLREEVDDERKML--------QMAEVWREERVQMKLVDAKVAVEQKYSQ 230
AE+ L E KLR E + ER++L ++ EV RE + + D A E +Y +
Sbjct: 300 AEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGE 359
Query: 231 MNKLVAELEAF 241
+ KL AE+EA
Sbjct: 360 LPKLEAEVEAL 370
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 89 LRKVSEEKAAWRSRE----HEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADA 142
LR S + +W E E++RAF++ + I+ Q + I+NS+L+++L D
Sbjct: 165 LRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDG 222
>pdb|3SYJ|A Chain A, Crystal Structure Of The Haemophilus Influenzae Hap
Adhesin
Length = 1011
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 399 PITEISEVCSVPTKSLKKVSSIARLWRSGPNNGDNYKIITVDGTKGRLSVSNGRLSNGSL 458
P T+I+ ++ + V +A+L +G N+ T+ + + N RLS+ S
Sbjct: 699 PKTQINGSINLTDNATANVKGLAKL--NGNVTLTNHSQFTL--SNNATQIGNIRLSDNST 754
Query: 459 ASLDRGSGNGGLSPSDLGQWSSPDSGNPHVTRGMKGC 495
A++D + NG + +D Q+S +S H +G KG
Sbjct: 755 ATVDNANLNGNVHLTDSAQFSLKNSHFSHQIQGDKGT 791
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 21/107 (19%)
Query: 242 LSSRSINPDIQEMKEAEMLRQA------------AASVNIQEIKE------FTYEPPNPD 283
LS SI+P + E+K + QA + + I I+E TYE N D
Sbjct: 131 LSIGSIDPIVVELKNQNKIDQALFTFYLPVHDKHSGYLTIGGIEEKFYEGELTYEKLNHD 190
Query: 284 DIFSVFEDVNFGESNERE---IEPSGAYSPASHASKMHTVSPEVNVI 327
+ V DVNFG+++ + I SG + + S ++ ++NVI
Sbjct: 191 LFWQVDLDVNFGKTSMEKANVIVDSGTSTITAPTSFINKFFKDLNVI 237
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.126 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,979,447
Number of Sequences: 62578
Number of extensions: 628466
Number of successful extensions: 1453
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1433
Number of HSP's gapped (non-prelim): 48
length of query: 531
length of database: 14,973,337
effective HSP length: 103
effective length of query: 428
effective length of database: 8,527,803
effective search space: 3649899684
effective search space used: 3649899684
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)