Query 009584
Match_columns 531
No_of_seqs 96 out of 118
Neff 3.4
Searched_HMMs 46136
Date Thu Mar 28 14:53:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009584.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009584hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07888 CALCOCO1: Calcium bin 97.8 0.086 1.9E-06 58.6 32.8 117 128-245 302-440 (546)
2 KOG0977 Nuclear envelope prote 97.5 0.049 1.1E-06 60.5 25.4 133 57-190 115-267 (546)
3 PF09726 Macoilin: Transmembra 97.5 0.031 6.6E-07 63.6 24.1 164 55-244 460-626 (697)
4 PF09726 Macoilin: Transmembra 96.7 0.3 6.6E-06 55.8 22.5 160 56-237 426-613 (697)
5 KOG0971 Microtubule-associated 96.6 0.61 1.3E-05 54.8 23.6 141 51-191 272-443 (1243)
6 PF13851 GAS: Growth-arrest sp 96.5 0.93 2E-05 44.3 21.5 47 33-84 10-56 (201)
7 KOG0161 Myosin class II heavy 96.4 0.59 1.3E-05 58.6 24.0 92 55-146 964-1057(1930)
8 TIGR00606 rad50 rad50. This fa 96.4 1.2 2.6E-05 53.8 25.9 117 122-246 849-968 (1311)
9 TIGR02169 SMC_prok_A chromosom 96.3 2.4 5.2E-05 48.9 26.7 26 215-240 434-459 (1164)
10 KOG0996 Structural maintenance 96.3 1 2.2E-05 54.1 23.8 179 66-244 331-515 (1293)
11 COG1196 Smc Chromosome segrega 96.2 3.4 7.3E-05 49.5 27.7 42 151-192 828-869 (1163)
12 COG1196 Smc Chromosome segrega 96.1 2.2 4.8E-05 51.0 25.9 136 59-195 344-483 (1163)
13 PF00038 Filament: Intermediat 96.0 0.86 1.9E-05 45.7 19.1 95 56-155 48-149 (312)
14 TIGR02168 SMC_prok_B chromosom 95.8 5.1 0.00011 46.0 26.4 30 59-88 681-710 (1179)
15 TIGR02168 SMC_prok_B chromosom 95.7 5.3 0.00012 45.8 25.7 29 59-87 674-702 (1179)
16 PF00038 Filament: Intermediat 95.7 2.7 5.8E-05 42.2 22.7 77 54-135 74-151 (312)
17 PF07888 CALCOCO1: Calcium bin 95.1 7.3 0.00016 43.9 25.1 35 57-91 159-193 (546)
18 KOG0933 Structural maintenance 95.0 4.9 0.00011 48.1 22.7 110 135-246 792-902 (1174)
19 KOG0612 Rho-associated, coiled 95.0 6 0.00013 48.1 23.5 111 60-175 466-581 (1317)
20 KOG0977 Nuclear envelope prote 94.8 6.1 0.00013 44.5 21.9 130 60-189 90-232 (546)
21 PRK09039 hypothetical protein; 94.7 4.2 9.1E-05 42.8 19.7 140 57-244 48-187 (343)
22 PF05701 WEMBL: Weak chloropla 94.7 8.5 0.00018 42.6 22.6 67 169-243 376-442 (522)
23 PHA02562 46 endonuclease subun 93.8 8.7 0.00019 41.4 20.2 38 139-176 257-296 (562)
24 PF05701 WEMBL: Weak chloropla 93.8 11 0.00024 41.7 21.2 148 46-195 240-395 (522)
25 KOG0161 Myosin class II heavy 93.3 28 0.0006 44.7 25.6 115 57-178 1247-1363(1930)
26 PRK02224 chromosome segregatio 93.1 20 0.00044 41.1 25.8 9 284-292 742-750 (880)
27 KOG0996 Structural maintenance 92.5 12 0.00025 45.7 20.0 91 105-195 475-565 (1293)
28 PF09727 CortBP2: Cortactin-bi 92.4 1.8 3.9E-05 42.8 11.4 89 125-213 90-190 (192)
29 KOG0964 Structural maintenance 91.9 28 0.0006 42.2 21.7 185 35-239 230-442 (1200)
30 KOG0994 Extracellular matrix g 91.9 40 0.00087 41.7 23.6 28 217-244 1719-1746(1758)
31 KOG4593 Mitotic checkpoint pro 91.3 17 0.00038 42.1 19.0 236 27-277 351-607 (716)
32 KOG0250 DNA repair protein RAD 91.0 39 0.00084 41.1 22.0 189 57-271 346-547 (1074)
33 PRK11637 AmiB activator; Provi 90.5 27 0.00059 37.3 20.9 39 56-94 76-114 (428)
34 PF12718 Tropomyosin_1: Tropom 90.2 16 0.00034 34.2 18.5 93 57-154 2-104 (143)
35 KOG0976 Rho/Rac1-interacting s 89.8 52 0.0011 39.4 21.6 121 68-189 251-385 (1265)
36 PF09730 BicD: Microtubule-ass 89.4 50 0.0011 38.7 21.6 111 127-245 73-186 (717)
37 KOG0612 Rho-associated, coiled 89.3 65 0.0014 39.9 22.1 93 101-193 542-651 (1317)
38 PF07798 DUF1640: Protein of u 89.3 20 0.00044 34.1 18.6 66 123-190 84-156 (177)
39 KOG0163 Myosin class VI heavy 88.8 27 0.00058 41.5 17.9 93 31-125 846-940 (1259)
40 PF00261 Tropomyosin: Tropomyo 88.7 27 0.00058 34.7 20.2 133 57-196 94-228 (237)
41 PF10174 Cast: RIM-binding pro 88.7 58 0.0012 38.5 21.1 181 57-241 130-376 (775)
42 PF12128 DUF3584: Protein of u 88.4 70 0.0015 39.0 26.1 22 223-244 852-873 (1201)
43 PF12128 DUF3584: Protein of u 88.3 70 0.0015 39.0 24.9 12 59-70 604-615 (1201)
44 PF05667 DUF812: Protein of un 87.3 51 0.0011 37.7 19.0 101 103-203 329-432 (594)
45 PF04111 APG6: Autophagy prote 87.0 5.4 0.00012 41.5 10.5 50 146-195 52-101 (314)
46 KOG0963 Transcription factor/C 86.7 17 0.00038 41.6 14.8 121 52-203 232-357 (629)
47 PF07798 DUF1640: Protein of u 86.7 27 0.00058 33.3 14.2 94 55-152 58-153 (177)
48 TIGR00606 rad50 rad50. This fa 86.6 90 0.0019 38.4 25.2 37 58-94 891-927 (1311)
49 KOG1103 Predicted coiled-coil 86.6 22 0.00048 38.8 14.7 164 53-244 105-291 (561)
50 KOG0933 Structural maintenance 86.5 88 0.0019 38.2 26.0 100 57-156 686-795 (1174)
51 KOG0971 Microtubule-associated 86.3 72 0.0016 38.7 19.6 57 97-157 268-326 (1243)
52 TIGR01843 type_I_hlyD type I s 86.0 44 0.00096 34.3 21.2 21 57-77 83-103 (423)
53 KOG4674 Uncharacterized conser 85.7 75 0.0016 40.8 20.5 129 89-240 1280-1426(1822)
54 KOG0976 Rho/Rac1-interacting s 85.6 91 0.002 37.5 22.8 80 125-204 272-365 (1265)
55 KOG0982 Centrosomal protein Nu 84.3 30 0.00066 38.4 14.7 97 110-208 322-444 (502)
56 PF09728 Taxilin: Myosin-like 83.7 49 0.0011 34.6 15.6 46 150-195 63-108 (309)
57 PF10186 Atg14: UV radiation r 83.2 49 0.0011 32.5 19.0 15 107-121 75-89 (302)
58 KOG0239 Kinesin (KAR3 subfamil 82.6 80 0.0017 36.7 17.9 91 152-244 221-315 (670)
59 PF10168 Nup88: Nuclear pore c 82.4 68 0.0015 37.4 17.4 90 57-155 567-664 (717)
60 PF12325 TMF_TATA_bd: TATA ele 81.8 43 0.00094 30.9 14.4 40 55-94 23-62 (120)
61 cd07658 F-BAR_NOSTRIN The F-BA 81.7 47 0.001 33.2 14.0 35 55-92 80-114 (239)
62 KOG4787 Uncharacterized conser 81.6 35 0.00076 39.4 14.3 107 57-182 334-440 (852)
63 KOG0163 Myosin class VI heavy 81.4 53 0.0011 39.2 15.8 27 20-46 860-886 (1259)
64 PRK04863 mukB cell division pr 81.2 1.7E+02 0.0036 37.2 22.6 20 503-522 794-813 (1486)
65 PRK03918 chromosome segregatio 81.0 1.1E+02 0.0024 35.1 26.4 11 35-45 145-155 (880)
66 PF01576 Myosin_tail_1: Myosin 80.5 0.52 1.1E-05 54.8 0.0 141 37-184 674-818 (859)
67 COG2433 Uncharacterized conser 79.5 71 0.0015 37.0 15.9 73 19-110 309-383 (652)
68 COG1340 Uncharacterized archae 79.3 91 0.002 33.1 21.6 44 152-195 166-209 (294)
69 PF14197 Cep57_CLD_2: Centroso 79.2 22 0.00048 29.8 9.2 61 55-120 5-65 (69)
70 PF10186 Atg14: UV radiation r 78.0 73 0.0016 31.3 15.4 40 164-203 69-108 (302)
71 PF00901 Orbi_VP5: Orbivirus o 77.8 36 0.00078 38.3 12.7 53 114-166 96-148 (508)
72 PF10174 Cast: RIM-binding pro 77.7 1.6E+02 0.0035 35.0 24.6 55 36-90 302-357 (775)
73 PRK04778 septation ring format 77.6 1.3E+02 0.0028 33.8 22.1 50 105-154 285-334 (569)
74 PF02970 TBCA: Tubulin binding 77.2 26 0.00056 30.5 9.3 84 164-256 6-89 (90)
75 KOG0250 DNA repair protein RAD 75.6 2.1E+02 0.0045 35.3 23.0 13 419-431 607-621 (1074)
76 PRK03918 chromosome segregatio 75.6 1.6E+02 0.0034 33.9 25.8 17 169-185 311-327 (880)
77 PF05615 THOC7: Tho complex su 75.5 52 0.0011 29.9 11.3 33 55-87 46-78 (139)
78 PF06428 Sec2p: GDP/GTP exchan 75.1 9.1 0.0002 34.3 6.2 70 116-185 1-71 (100)
79 TIGR01069 mutS2 MutS2 family p 75.0 47 0.001 38.8 13.4 58 61-118 524-581 (771)
80 PRK00409 recombination and DNA 74.8 56 0.0012 38.3 13.9 29 127-155 567-595 (782)
81 TIGR02231 conserved hypothetic 74.4 41 0.00089 36.9 12.2 65 56-122 72-144 (525)
82 KOG0993 Rab5 GTPase effector R 74.1 77 0.0017 35.4 13.8 128 57-190 40-173 (542)
83 PF09731 Mitofilin: Mitochondr 74.0 1.5E+02 0.0033 32.9 22.7 42 35-76 226-272 (582)
84 TIGR03185 DNA_S_dndD DNA sulfu 73.7 1.7E+02 0.0036 33.3 22.2 65 418-490 563-630 (650)
85 PF15035 Rootletin: Ciliary ro 73.7 94 0.002 30.4 17.5 93 53-157 14-122 (182)
86 PRK04778 septation ring format 73.6 1.6E+02 0.0035 33.1 23.7 48 55-102 256-308 (569)
87 PF14942 Muted: Organelle biog 72.9 88 0.0019 29.8 15.2 55 81-135 19-75 (145)
88 KOG0995 Centromere-associated 72.9 1.9E+02 0.004 33.5 21.8 91 58-153 269-362 (581)
89 PF09787 Golgin_A5: Golgin sub 72.8 1.6E+02 0.0035 32.7 23.1 36 86-121 158-193 (511)
90 PF14931 IFT20: Intraflagellar 72.5 45 0.00097 30.8 10.1 83 159-243 21-108 (120)
91 KOG4661 Hsp27-ERE-TATA-binding 72.1 38 0.00083 39.1 11.3 14 151-164 663-676 (940)
92 PRK11637 AmiB activator; Provi 72.0 1.5E+02 0.0032 31.9 25.1 32 59-90 44-75 (428)
93 PF05837 CENP-H: Centromere pr 72.0 73 0.0016 28.4 11.2 41 102-142 3-43 (106)
94 PF04108 APG17: Autophagy prot 71.7 1.5E+02 0.0033 32.0 15.5 34 144-177 346-379 (412)
95 KOG0994 Extracellular matrix g 71.4 2.8E+02 0.0062 35.0 21.3 41 151-191 1598-1638(1758)
96 PF05010 TACC: Transforming ac 71.1 1.2E+02 0.0026 30.5 22.5 26 134-159 80-105 (207)
97 PF07926 TPR_MLP1_2: TPR/MLP1/ 70.8 85 0.0018 28.6 17.1 69 57-125 5-75 (132)
98 PF10473 CENP-F_leu_zip: Leuci 70.3 1E+02 0.0022 29.3 18.0 35 57-91 12-46 (140)
99 PRK14154 heat shock protein Gr 70.2 99 0.0021 31.2 12.7 67 51-117 48-114 (208)
100 KOG0980 Actin-binding protein 70.1 2.6E+02 0.0056 34.0 22.7 45 132-176 433-477 (980)
101 KOG1853 LIS1-interacting prote 70.0 1.5E+02 0.0033 31.3 18.3 111 46-175 36-147 (333)
102 KOG0963 Transcription factor/C 69.8 2.2E+02 0.0048 33.1 25.0 152 14-172 100-263 (629)
103 KOG0964 Structural maintenance 69.4 2.9E+02 0.0062 34.2 20.7 104 135-240 298-422 (1200)
104 KOG3915 Transcription regulato 68.5 38 0.00082 38.2 10.2 58 58-134 510-567 (641)
105 TIGR01000 bacteriocin_acc bact 67.4 1.9E+02 0.004 31.3 22.3 26 55-80 97-122 (457)
106 PF04156 IncA: IncA protein; 67.3 1.1E+02 0.0024 28.7 14.7 14 63-76 82-95 (191)
107 PF07200 Mod_r: Modifier of ru 67.1 1E+02 0.0022 28.2 16.0 131 32-189 4-134 (150)
108 PF10473 CENP-F_leu_zip: Leuci 67.0 1.2E+02 0.0026 28.9 14.9 88 57-156 26-116 (140)
109 PRK00409 recombination and DNA 66.8 2.2E+02 0.0048 33.5 16.5 20 81-100 514-533 (782)
110 PRK10884 SH3 domain-containing 66.4 1.2E+02 0.0027 30.2 12.5 25 53-77 91-115 (206)
111 KOG4466 Component of histone d 66.3 1.8E+02 0.004 30.8 14.3 85 78-186 18-104 (291)
112 COG1842 PspA Phage shock prote 66.2 1.5E+02 0.0033 29.9 17.7 73 57-154 33-105 (225)
113 PF15254 CCDC14: Coiled-coil d 66.1 2.3E+02 0.005 34.0 16.1 123 104-241 382-520 (861)
114 KOG1029 Endocytic adaptor prot 66.1 3.1E+02 0.0066 33.3 21.1 63 127-189 445-510 (1118)
115 PF08647 BRE1: BRE1 E3 ubiquit 65.9 92 0.002 27.2 12.4 67 85-156 29-95 (96)
116 PF14915 CCDC144C: CCDC144C pr 65.9 1.9E+02 0.0042 30.9 21.3 161 57-224 8-195 (305)
117 PRK04863 mukB cell division pr 65.7 3.8E+02 0.0082 34.2 23.7 13 403-415 687-700 (1486)
118 PF04849 HAP1_N: HAP1 N-termin 65.4 2E+02 0.0042 30.8 16.9 176 57-244 99-301 (306)
119 PF06705 SF-assemblin: SF-asse 64.3 1.6E+02 0.0034 29.4 24.4 68 103-172 93-161 (247)
120 PF01576 Myosin_tail_1: Myosin 64.0 2.2 4.9E-05 49.8 0.0 91 59-149 360-452 (859)
121 COG2433 Uncharacterized conser 63.8 1.1E+02 0.0023 35.7 12.7 24 99-122 471-494 (652)
122 PF05266 DUF724: Protein of un 63.6 1.6E+02 0.0034 29.1 15.7 20 172-191 159-178 (190)
123 KOG0579 Ste20-like serine/thre 63.5 3.3E+02 0.0071 32.8 21.0 79 154-244 1091-1171(1187)
124 TIGR00634 recN DNA repair prot 62.6 2.6E+02 0.0056 31.3 18.9 20 117-136 213-232 (563)
125 PF08317 Spc7: Spc7 kinetochor 61.8 2.1E+02 0.0045 29.9 15.6 128 57-199 77-229 (325)
126 cd07651 F-BAR_PombeCdc15_like 61.8 1.7E+02 0.0037 28.8 19.1 107 105-223 56-165 (236)
127 PF03962 Mnd1: Mnd1 family; I 61.7 1.6E+02 0.0036 28.7 12.6 16 176-191 132-147 (188)
128 smart00498 FH2 Formin Homology 61.4 1E+02 0.0023 33.2 11.8 114 57-170 312-431 (432)
129 PF08614 ATG16: Autophagy prot 61.4 1.6E+02 0.0035 28.4 12.3 84 55-143 102-185 (194)
130 TIGR01069 mutS2 MutS2 family p 61.2 2.9E+02 0.0064 32.6 16.1 19 81-99 509-527 (771)
131 KOG1029 Endocytic adaptor prot 60.6 3.8E+02 0.0083 32.6 17.6 26 351-376 739-764 (1118)
132 COG0419 SbcC ATPase involved i 60.4 3.5E+02 0.0076 32.1 24.7 17 109-125 566-582 (908)
133 KOG4348 Adaptor protein CMS/SE 59.9 30 0.00065 38.7 7.4 55 61-137 568-622 (627)
134 PF06705 SF-assemblin: SF-asse 58.6 2E+02 0.0043 28.7 23.5 61 83-143 12-76 (247)
135 KOG4403 Cell surface glycoprot 58.0 73 0.0016 35.8 9.9 24 132-155 304-327 (575)
136 COG4942 Membrane-bound metallo 57.9 3.1E+02 0.0067 30.6 23.2 35 155-189 144-178 (420)
137 PF11559 ADIP: Afadin- and alp 57.4 1.6E+02 0.0034 27.1 15.6 28 159-186 120-147 (151)
138 cd07653 F-BAR_CIP4-like The F- 57.3 2E+02 0.0043 28.2 17.5 84 112-195 94-177 (251)
139 PF05837 CENP-H: Centromere pr 57.1 1.4E+02 0.0029 26.7 9.9 28 148-175 62-89 (106)
140 PF09727 CortBP2: Cortactin-bi 56.9 2.1E+02 0.0046 28.7 12.1 80 63-158 108-190 (192)
141 PF05103 DivIVA: DivIVA protei 56.9 9.3 0.0002 33.6 2.6 34 159-192 87-120 (131)
142 PF14197 Cep57_CLD_2: Centroso 56.8 1E+02 0.0022 26.0 8.5 16 172-187 47-62 (69)
143 COG1340 Uncharacterized archae 56.8 2.7E+02 0.0059 29.7 16.4 62 56-122 35-96 (294)
144 PF02185 HR1: Hr1 repeat; Int 56.8 49 0.0011 27.0 6.6 21 111-131 3-23 (70)
145 PF05700 BCAS2: Breast carcino 56.5 2.1E+02 0.0046 28.3 17.1 114 56-180 98-211 (221)
146 PF13863 DUF4200: Domain of un 56.4 1.4E+02 0.0031 26.3 14.1 50 134-190 50-99 (126)
147 PRK00106 hypothetical protein; 55.6 3.6E+02 0.0079 30.8 22.3 12 109-120 79-90 (535)
148 PF03245 Phage_lysis: Bacterio 54.7 86 0.0019 28.8 8.5 68 101-169 6-73 (125)
149 cd07673 F-BAR_FCHO2 The F-BAR 54.6 2.5E+02 0.0055 28.7 18.1 151 23-176 53-240 (269)
150 PTZ00121 MAEBL; Provisional 53.9 6.3E+02 0.014 33.0 22.8 21 170-190 1210-1230(2084)
151 PRK14145 heat shock protein Gr 52.8 1.2E+02 0.0025 30.4 9.7 68 55-150 45-112 (196)
152 KOG1962 B-cell receptor-associ 52.8 1.6E+02 0.0035 30.0 10.7 62 135-196 149-210 (216)
153 KOG0249 LAR-interacting protei 52.6 4.9E+02 0.011 31.3 18.1 69 147-221 219-287 (916)
154 PF10168 Nup88: Nuclear pore c 52.4 4.6E+02 0.0099 30.9 19.1 15 81-95 559-573 (717)
155 KOG3470 Beta-tubulin folding c 52.2 1.8E+02 0.0038 27.0 9.8 88 164-260 12-99 (107)
156 PF05622 HOOK: HOOK protein; 52.1 4.7 0.0001 45.8 0.0 64 132-195 234-300 (713)
157 PRK14140 heat shock protein Gr 52.0 2.5E+02 0.0055 27.9 13.2 54 53-106 35-88 (191)
158 PRK14139 heat shock protein Gr 51.9 1.2E+02 0.0026 30.0 9.5 66 57-150 34-99 (185)
159 KOG2129 Uncharacterized conser 51.9 1.7E+02 0.0038 32.9 11.5 100 36-155 214-320 (552)
160 PF05615 THOC7: Tho complex su 51.4 1.9E+02 0.0042 26.3 11.3 58 130-187 46-103 (139)
161 COG4942 Membrane-bound metallo 50.7 4E+02 0.0086 29.8 19.2 38 57-94 47-84 (420)
162 PF05667 DUF812: Protein of un 50.5 4.5E+02 0.0098 30.3 18.4 45 55-99 328-372 (594)
163 PF07106 TBPIP: Tat binding pr 50.4 2.2E+02 0.0048 26.7 11.0 45 53-97 70-114 (169)
164 PRK14158 heat shock protein Gr 50.3 1.6E+02 0.0034 29.4 10.1 70 54-151 39-108 (194)
165 PRK14143 heat shock protein Gr 50.3 3E+02 0.0065 28.2 12.9 69 57-153 69-137 (238)
166 PRK14156 heat shock protein Gr 50.0 97 0.0021 30.4 8.5 65 59-151 31-95 (177)
167 KOG4807 F-actin binding protei 49.8 4.3E+02 0.0092 29.8 18.0 45 46-96 376-423 (593)
168 KOG0239 Kinesin (KAR3 subfamil 49.7 4.9E+02 0.011 30.5 16.1 40 54-93 181-220 (670)
169 PF05911 DUF869: Plant protein 49.7 5.3E+02 0.011 30.9 16.4 128 53-187 587-716 (769)
170 KOG0980 Actin-binding protein 49.7 5.8E+02 0.012 31.3 22.3 34 56-89 366-399 (980)
171 PF11932 DUF3450: Protein of u 49.6 2.8E+02 0.0061 27.7 15.3 100 62-176 21-120 (251)
172 PRK14146 heat shock protein Gr 49.6 1.2E+02 0.0026 30.5 9.3 43 56-98 55-97 (215)
173 PLN03188 kinesin-12 family pro 48.7 6.8E+02 0.015 31.9 21.0 68 49-116 1059-1142(1320)
174 PF08317 Spc7: Spc7 kinetochor 48.7 3.4E+02 0.0074 28.4 18.4 50 108-160 183-232 (325)
175 PF06005 DUF904: Protein of un 48.4 1.4E+02 0.0031 25.3 8.2 61 46-114 9-69 (72)
176 KOG0249 LAR-interacting protei 48.3 5.7E+02 0.012 30.9 21.5 74 281-363 421-494 (916)
177 PF04156 IncA: IncA protein; 48.1 2.4E+02 0.0053 26.5 15.9 13 137-149 130-142 (191)
178 PF11559 ADIP: Afadin- and alp 47.5 2.3E+02 0.0049 26.1 16.1 36 127-162 105-140 (151)
179 PF07926 TPR_MLP1_2: TPR/MLP1/ 47.2 2.3E+02 0.0049 25.9 16.3 61 170-241 71-131 (132)
180 KOG0804 Cytoplasmic Zn-finger 46.8 3.4E+02 0.0074 30.8 12.8 106 127-246 348-455 (493)
181 KOG3433 Protein involved in me 46.6 2.4E+02 0.0052 28.6 10.6 63 130-192 81-143 (203)
182 TIGR03752 conj_TIGR03752 integ 46.4 2.6E+02 0.0057 31.6 12.0 64 48-122 55-118 (472)
183 KOG3915 Transcription regulato 46.4 78 0.0017 35.8 8.0 14 86-99 545-558 (641)
184 PRK01156 chromosome segregatio 45.8 5.6E+02 0.012 30.0 25.6 30 57-86 471-500 (895)
185 PF14915 CCDC144C: CCDC144C pr 45.6 4.2E+02 0.0091 28.5 13.6 108 56-178 180-291 (305)
186 PRK09174 F0F1 ATP synthase sub 45.3 3.2E+02 0.0069 27.1 13.9 94 96-190 72-167 (204)
187 TIGR03185 DNA_S_dndD DNA sulfu 45.0 5.2E+02 0.011 29.4 19.1 28 66-93 388-415 (650)
188 KOG4643 Uncharacterized coiled 44.9 7.2E+02 0.016 31.1 22.3 217 54-280 473-716 (1195)
189 KOG4674 Uncharacterized conser 44.7 8.8E+02 0.019 32.0 23.1 42 56-97 1315-1356(1822)
190 PF14739 DUF4472: Domain of un 44.3 2E+02 0.0043 26.5 9.0 79 46-160 22-100 (108)
191 PF06818 Fez1: Fez1; InterPro 44.3 3.6E+02 0.0077 27.4 18.0 103 129-240 83-198 (202)
192 PF09763 Sec3_C: Exocyst compl 44.2 2.7E+02 0.0059 31.9 12.1 94 128-244 3-97 (701)
193 KOG2002 TPR-containing nuclear 44.2 7.1E+02 0.015 30.8 16.8 74 32-115 713-786 (1018)
194 PF06428 Sec2p: GDP/GTP exchan 43.8 1.5E+02 0.0032 26.7 8.0 63 63-143 2-64 (100)
195 PRK12704 phosphodiesterase; Pr 43.8 5.3E+02 0.011 29.2 17.9 13 486-498 381-393 (520)
196 PF14523 Syntaxin_2: Syntaxin- 43.7 2E+02 0.0043 24.3 9.6 36 122-157 63-98 (102)
197 PF09731 Mitofilin: Mitochondr 43.2 5.1E+02 0.011 28.8 22.0 18 61-78 250-267 (582)
198 PF07083 DUF1351: Protein of u 42.7 2.6E+02 0.0057 27.7 10.4 57 103-159 43-107 (215)
199 PRK14151 heat shock protein Gr 42.5 3.4E+02 0.0073 26.6 12.5 48 54-101 19-66 (176)
200 PF01025 GrpE: GrpE; InterPro 42.2 86 0.0019 28.9 6.6 50 57-106 13-62 (165)
201 PF14643 DUF4455: Domain of un 41.9 5.2E+02 0.011 28.5 16.4 182 5-198 227-426 (473)
202 TIGR01000 bacteriocin_acc bact 41.6 4.9E+02 0.011 28.2 20.0 20 214-233 297-316 (457)
203 PF04871 Uso1_p115_C: Uso1 / p 41.4 3E+02 0.0066 25.7 12.2 38 167-206 57-95 (136)
204 PLN03188 kinesin-12 family pro 40.8 8.8E+02 0.019 30.9 19.5 93 108-203 1078-1186(1320)
205 PF13935 Ead_Ea22: Ead/Ea22-li 40.7 2.5E+02 0.0054 26.1 9.3 66 111-176 69-137 (139)
206 KOG0288 WD40 repeat protein Ti 40.6 5.8E+02 0.013 28.8 14.3 33 195-227 107-139 (459)
207 KOG1265 Phospholipase C [Lipid 40.6 8.1E+02 0.018 30.4 18.6 66 176-244 1113-1179(1189)
208 PRK00106 hypothetical protein; 39.6 6.3E+02 0.014 28.9 17.5 9 114-122 88-96 (535)
209 PF14932 HAUS-augmin3: HAUS au 39.4 4.3E+02 0.0092 26.9 11.7 83 102-187 68-150 (256)
210 PF09744 Jnk-SapK_ap_N: JNK_SA 39.2 3.6E+02 0.0079 26.0 14.2 47 57-104 32-78 (158)
211 PRK14147 heat shock protein Gr 39.1 2.1E+02 0.0045 27.8 8.9 67 57-151 20-86 (172)
212 PF09636 XkdW: XkdW protein; 38.0 11 0.00023 34.6 0.0 39 110-148 66-104 (108)
213 PRK14162 heat shock protein Gr 37.9 4.3E+02 0.0092 26.4 12.8 46 57-102 41-86 (194)
214 cd07648 F-BAR_FCHO The F-BAR ( 37.9 4.3E+02 0.0092 26.4 19.1 15 255-269 222-236 (261)
215 PF13935 Ead_Ea22: Ead/Ea22-li 37.6 3.4E+02 0.0073 25.2 10.2 25 53-77 65-89 (139)
216 PF01442 Apolipoprotein: Apoli 37.4 3E+02 0.0066 24.6 19.8 10 164-173 136-145 (202)
217 PF15290 Syntaphilin: Golgi-lo 37.1 1.1E+02 0.0023 32.7 6.9 56 169-240 79-135 (305)
218 PF13747 DUF4164: Domain of un 36.8 2.9E+02 0.0063 24.2 10.4 47 134-180 36-82 (89)
219 PF12999 PRKCSH-like: Glucosid 36.6 1.1E+02 0.0024 30.2 6.6 32 164-195 116-147 (176)
220 PF14712 Snapin_Pallidin: Snap 36.6 2.6E+02 0.0056 23.5 10.8 75 54-135 6-80 (92)
221 COG1579 Zn-ribbon protein, pos 36.5 5E+02 0.011 26.8 17.1 124 57-183 47-170 (239)
222 cd07625 BAR_Vps17p The Bin/Amp 36.4 4.8E+02 0.01 26.6 15.2 81 54-140 111-192 (230)
223 PF05010 TACC: Transforming ac 36.3 4.7E+02 0.01 26.4 18.3 28 148-175 179-206 (207)
224 PRK14153 heat shock protein Gr 35.7 4.6E+02 0.01 26.2 11.4 41 57-97 35-75 (194)
225 KOG0804 Cytoplasmic Zn-finger 35.6 7.2E+02 0.016 28.4 15.1 64 62-139 347-412 (493)
226 TIGR02680 conserved hypothetic 35.6 1E+03 0.022 30.1 24.2 26 211-236 924-949 (1353)
227 KOG0978 E3 ubiquitin ligase in 35.5 8.3E+02 0.018 29.1 23.9 127 59-192 397-530 (698)
228 PRK14155 heat shock protein Gr 35.4 2.4E+02 0.0053 28.3 8.9 67 58-152 16-82 (208)
229 KOG4673 Transcription factor T 35.3 8.8E+02 0.019 29.3 23.8 66 71-136 418-494 (961)
230 KOG2264 Exostosin EXT1L [Signa 35.3 1.9E+02 0.0042 33.8 9.0 50 136-195 81-130 (907)
231 PF13863 DUF4200: Domain of un 35.2 3.1E+02 0.0068 24.1 16.6 108 60-168 12-119 (126)
232 PRK04654 sec-independent trans 35.0 2.8E+02 0.0061 28.4 9.3 30 129-158 26-55 (214)
233 KOG4460 Nuclear pore complex, 34.9 4.9E+02 0.011 30.5 12.0 57 150-206 601-657 (741)
234 PF05529 Bap31: B-cell recepto 34.8 1.8E+02 0.004 27.7 7.8 23 173-195 169-191 (192)
235 PLN02372 violaxanthin de-epoxi 34.8 4.9E+02 0.011 29.3 11.7 51 114-166 384-437 (455)
236 PF04977 DivIC: Septum formati 33.7 1.6E+02 0.0036 23.5 6.2 34 55-88 17-50 (80)
237 PRK14161 heat shock protein Gr 33.1 3.4E+02 0.0074 26.6 9.3 22 130-151 66-87 (178)
238 KOG4421 Uncharacterized conser 32.7 2.9E+02 0.0062 30.9 9.5 122 40-186 33-173 (637)
239 PRK10884 SH3 domain-containing 32.5 5.2E+02 0.011 25.9 11.8 30 128-157 137-166 (206)
240 PF08549 SWI-SNF_Ssr4: Fungal 32.3 56 0.0012 38.0 4.4 85 161-245 360-464 (669)
241 PF09304 Cortex-I_coil: Cortex 32.3 4.1E+02 0.009 24.6 14.3 68 57-129 18-85 (107)
242 PF04111 APG6: Autophagy prote 31.5 6.4E+02 0.014 26.6 13.1 15 55-69 9-23 (314)
243 PRK10929 putative mechanosensi 31.5 1.1E+03 0.024 29.4 21.8 119 55-185 173-313 (1109)
244 cd07625 BAR_Vps17p The Bin/Amp 31.0 4.3E+02 0.0093 26.9 9.9 11 154-164 215-225 (230)
245 PF03962 Mnd1: Mnd1 family; I 30.7 5.2E+02 0.011 25.3 11.8 29 69-97 69-97 (188)
246 COG3074 Uncharacterized protei 30.5 3.1E+02 0.0067 24.0 7.5 57 52-112 15-74 (79)
247 PRK14144 heat shock protein Gr 30.1 4.1E+02 0.0088 26.7 9.4 22 130-151 92-113 (199)
248 smart00787 Spc7 Spc7 kinetocho 29.9 7E+02 0.015 26.5 17.1 126 54-197 139-264 (312)
249 PF09304 Cortex-I_coil: Cortex 29.8 4.6E+02 0.0099 24.3 12.8 20 108-127 15-34 (107)
250 KOG4661 Hsp27-ERE-TATA-binding 29.7 1E+03 0.022 28.3 13.4 26 115-140 645-670 (940)
251 PF00901 Orbi_VP5: Orbivirus o 29.5 9.2E+02 0.02 27.7 16.1 17 67-83 89-105 (508)
252 PRK12704 phosphodiesterase; Pr 29.3 8.8E+02 0.019 27.5 18.2 13 122-134 89-101 (520)
253 PRK14160 heat shock protein Gr 29.2 6.2E+02 0.013 25.7 13.0 19 132-150 110-128 (211)
254 PF11262 Tho2: Transcription f 29.0 1.8E+02 0.0038 30.2 7.0 52 57-108 48-100 (298)
255 PF05557 MAD: Mitotic checkpoi 28.9 1.2E+02 0.0025 35.0 6.3 62 57-118 359-429 (722)
256 PF02841 GBP_C: Guanylate-bind 28.9 6.5E+02 0.014 25.8 12.3 6 108-113 125-130 (297)
257 PF09787 Golgin_A5: Golgin sub 28.8 8.5E+02 0.019 27.2 19.2 31 58-88 105-135 (511)
258 cd07605 I-BAR_IMD Inverse (I)- 27.9 6.5E+02 0.014 25.5 18.4 135 33-177 62-205 (223)
259 PF11172 DUF2959: Protein of u 27.7 1.4E+02 0.003 30.3 5.7 56 37-92 145-200 (201)
260 PF09036 Bcr-Abl_Oligo: Bcr-Ab 27.6 1.9E+02 0.004 25.5 5.7 43 57-99 28-70 (79)
261 PF09798 LCD1: DNA damage chec 27.6 1.6E+02 0.0036 34.3 7.1 49 68-124 3-51 (654)
262 PF04859 DUF641: Plant protein 27.4 72 0.0016 30.0 3.6 14 24-37 36-49 (131)
263 KOG0018 Structural maintenance 27.4 1.3E+03 0.029 29.0 16.9 36 138-173 311-346 (1141)
264 PRK09039 hypothetical protein; 27.4 7.8E+02 0.017 26.2 18.7 27 105-131 56-82 (343)
265 cd07657 F-BAR_Fes_Fer The F-BA 27.3 6.6E+02 0.014 25.4 19.8 39 52-91 6-48 (237)
266 COG4717 Uncharacterized conser 27.1 1.3E+03 0.028 28.6 25.6 92 31-124 156-248 (984)
267 KOG0995 Centromere-associated 27.0 1.1E+03 0.023 27.7 25.5 55 69-123 301-360 (581)
268 PF03938 OmpH: Outer membrane 27.0 4.8E+02 0.01 23.7 10.6 36 84-119 58-93 (158)
269 COG2317 Zn-dependent carboxype 26.8 4E+02 0.0087 30.4 9.5 108 161-295 65-179 (497)
270 cd07675 F-BAR_FNBP1L The F-BAR 26.6 7.4E+02 0.016 25.7 12.1 40 112-154 98-137 (252)
271 KOG3612 PHD Zn-finger protein 26.4 5.1E+02 0.011 30.1 10.3 37 122-158 463-503 (588)
272 KOG0288 WD40 repeat protein Ti 26.4 9.8E+02 0.021 27.1 15.1 32 137-168 100-131 (459)
273 PF15294 Leu_zip: Leucine zipp 26.4 8E+02 0.017 26.0 14.9 82 57-158 134-218 (278)
274 PRK14163 heat shock protein Gr 26.3 7.1E+02 0.015 25.4 12.5 62 57-118 42-103 (214)
275 KOG2185 Predicted RNA-processi 26.2 1.6E+02 0.0034 33.0 6.2 61 175-240 416-476 (486)
276 KOG4603 TBP-1 interacting prot 26.2 7E+02 0.015 25.3 13.8 119 44-178 65-190 (201)
277 PRK00888 ftsB cell division pr 25.9 3.2E+02 0.0069 24.5 7.2 35 56-90 28-62 (105)
278 PF04778 LMP: LMP repeated reg 25.9 5.8E+02 0.013 25.1 9.3 38 62-100 72-109 (157)
279 KOG4571 Activating transcripti 25.8 2.8E+02 0.0061 29.6 7.8 41 151-191 241-281 (294)
280 PF13514 AAA_27: AAA domain 25.6 1.3E+03 0.028 28.2 26.8 37 58-94 614-650 (1111)
281 PRK10476 multidrug resistance 25.5 7.6E+02 0.016 25.4 15.4 19 57-75 88-106 (346)
282 PRK04654 sec-independent trans 25.3 3.6E+02 0.0077 27.7 8.1 16 109-124 41-56 (214)
283 PF06632 XRCC4: DNA double-str 25.2 6.6E+02 0.014 27.1 10.6 51 142-192 156-207 (342)
284 PF12210 Hrs_helical: Hepatocy 25.0 5.3E+02 0.012 23.5 11.4 82 37-129 11-95 (96)
285 PRK13454 F0F1 ATP synthase sub 24.9 6.3E+02 0.014 24.3 14.3 38 116-153 69-106 (181)
286 cd07652 F-BAR_Rgd1 The F-BAR ( 24.9 7.1E+02 0.015 24.9 18.9 99 113-240 97-197 (234)
287 PRK14148 heat shock protein Gr 24.4 7.2E+02 0.016 24.9 12.8 41 57-97 42-82 (195)
288 PF14073 Cep57_CLD: Centrosome 24.3 7.2E+02 0.016 24.8 18.8 149 56-222 2-164 (178)
289 PRK14147 heat shock protein Gr 24.2 4.7E+02 0.01 25.5 8.5 19 286-304 144-163 (172)
290 PF09730 BicD: Microtubule-ass 24.2 1.3E+03 0.028 27.6 14.3 47 57-103 354-400 (717)
291 PF15070 GOLGA2L5: Putative go 24.1 1.2E+03 0.026 27.2 19.4 183 57-243 38-237 (617)
292 TIGR03319 YmdA_YtgF conserved 24.0 1.1E+03 0.023 26.7 18.4 137 58-198 21-160 (514)
293 PLN03229 acetyl-coenzyme A car 23.9 7.8E+02 0.017 29.6 11.5 12 60-71 434-445 (762)
294 KOG4364 Chromatin assembly fac 23.7 1.3E+03 0.029 27.7 15.4 69 91-160 269-337 (811)
295 TIGR02977 phageshock_pspA phag 23.7 7.1E+02 0.015 24.5 16.5 103 57-187 33-135 (219)
296 TIGR01834 PHA_synth_III_E poly 23.3 91 0.002 33.4 3.8 31 61-91 288-318 (320)
297 COG3879 Uncharacterized protei 23.2 1.2E+02 0.0026 31.5 4.5 84 216-299 54-155 (247)
298 PF06156 DUF972: Protein of un 23.0 2.2E+02 0.0048 25.8 5.7 41 57-97 17-57 (107)
299 PRK03598 putative efflux pump 23.0 8.2E+02 0.018 25.0 13.0 83 60-156 79-164 (331)
300 PRK10361 DNA recombination pro 22.9 1.2E+03 0.025 26.6 18.5 40 159-198 134-173 (475)
301 PF05852 DUF848: Gammaherpesvi 22.7 3.3E+02 0.0072 26.3 7.0 55 48-121 54-108 (146)
302 PRK13454 F0F1 ATP synthase sub 22.6 7E+02 0.015 24.0 16.5 85 58-148 54-138 (181)
303 COG3524 KpsE Capsule polysacch 22.5 2.6E+02 0.0055 30.5 6.8 38 39-76 206-244 (372)
304 COG1322 Predicted nuclease of 22.4 1.1E+03 0.025 26.4 14.9 17 268-284 279-295 (448)
305 PF13801 Metal_resist: Heavy-m 22.2 2.3E+02 0.0051 23.4 5.4 39 57-95 61-99 (125)
306 KOG0999 Microtubule-associated 22.2 1.4E+03 0.029 27.2 16.8 131 59-203 40-170 (772)
307 KOG0962 DNA repair protein RAD 22.1 1.7E+03 0.038 28.5 23.0 99 146-244 915-1030(1294)
308 PF02841 GBP_C: Guanylate-bind 22.0 8.7E+02 0.019 24.9 12.2 15 109-123 243-257 (297)
309 PRK14157 heat shock protein Gr 21.9 5.4E+02 0.012 26.5 8.8 64 59-150 81-144 (227)
310 KOG0247 Kinesin-like protein [ 21.9 1.4E+03 0.031 27.6 13.0 85 99-187 505-589 (809)
311 PRK13428 F0F1 ATP synthase sub 21.5 1.1E+03 0.024 26.0 16.5 66 122-187 45-112 (445)
312 PF05529 Bap31: B-cell recepto 21.3 7.1E+02 0.015 23.8 9.1 31 64-94 113-143 (192)
313 KOG0018 Structural maintenance 21.3 1.7E+03 0.037 28.1 23.4 29 132-160 326-354 (1141)
314 PF02183 HALZ: Homeobox associ 21.3 2E+02 0.0044 22.4 4.4 35 163-197 3-37 (45)
315 PF11932 DUF3450: Protein of u 21.2 8.3E+02 0.018 24.4 16.7 33 157-189 62-94 (251)
316 cd09236 V_AnPalA_UmRIM20_like 21.1 1E+03 0.022 25.3 15.8 18 228-245 336-353 (353)
317 TIGR02209 ftsL_broad cell divi 21.1 3.3E+02 0.0072 22.4 6.0 34 57-90 26-59 (85)
318 PF10147 CR6_interact: Growth 21.0 9.1E+02 0.02 24.7 10.7 46 64-109 80-125 (217)
319 PF06295 DUF1043: Protein of u 20.9 2.7E+02 0.0058 25.6 5.9 39 57-95 27-65 (128)
320 COG3851 UhpB Signal transducti 20.7 2.4E+02 0.0053 31.5 6.4 44 128-177 274-317 (497)
No 1
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.81 E-value=0.086 Score=58.61 Aligned_cols=117 Identities=21% Similarity=0.281 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhc----cHHHHHHHHHhhHHHHhhh-hhhHHH
Q 009584 128 IEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIE-EVCDELAKEIGE----DKAEVEALKRESMKLREEV-DDERKM 201 (531)
Q Consensus 128 ~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE-~vCdELAkeI~e----dkaEVe~lKres~k~reE~-eeER~M 201 (531)
++.-.-.|++||+++.+.=.+.+.||-.-|-.-.=|. .+|| .+-.+++ ..+|...|.+.....++++ +-.+++
T Consensus 302 Sqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad-~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el 380 (546)
T PF07888_consen 302 SQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLAD-ASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSREL 380 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4445566788888888777777777776664322222 2232 2223333 3334444444444444455 334556
Q ss_pred HHHHHhhHHHhhh----------------hhhhhhhhhhHHhhHHHHHHHHHHHHHHhhc
Q 009584 202 LQMAEVWREERVQ----------------MKLVDAKVAVEQKYSQMNKLVAELEAFLSSR 245 (531)
Q Consensus 202 LqmAEvWREERVQ----------------MKL~dAk~~leeK~s~ldkL~~elE~FL~sk 245 (531)
.++++...|||.+ +.|+|++-.|.|+.+.+..++-|=|-+...+
T Consensus 381 ~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~Ek 440 (546)
T PF07888_consen 381 QMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEK 440 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667766677664 4566666666666666666666666665554
No 2
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.50 E-value=0.049 Score=60.51 Aligned_cols=133 Identities=26% Similarity=0.381 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH----------------HHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVS----------------EEKAAWRSREHEKIRAFIDDLKAEISR 120 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~Kqla----------------EEK~awKskE~eki~a~i~slk~ELe~ 120 (531)
|..|+.|++.++.+..+..+++...+.+++..+..++ ||....=.+|-.++...|..++.+|++
T Consensus 115 i~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 115 ITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5677777777777777777777777766665443332 333444456888999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhccHHHHHHHHHhhHH
Q 009584 121 ERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKER----ELIEEVCDELAKEIGEDKAEVEALKRESMK 190 (531)
Q Consensus 121 ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaR----ellE~vCdELAkeI~edkaEVe~lKres~k 190 (531)
|.-+|..++.-..=|-.||.=.+...+..+.++-.- .+| ..=+..=+||+.-|.|.+|+-+..-+...+
T Consensus 195 Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~-~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~ 267 (546)
T KOG0977|consen 195 ETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRK-ARRDTTADNREYFKNELALAIREIRAQYEAISRQNRK 267 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH-HhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999988877777666654332 222 234566788888888888887776555444
No 3
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.48 E-value=0.031 Score=63.56 Aligned_cols=164 Identities=24% Similarity=0.358 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 009584 55 SMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSK 134 (531)
Q Consensus 55 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~K 134 (531)
+-|..|+.|-++.+.++..|.+.++..+..|..|=|+|++|+.++-. +-..|..|||.|+..|.-
T Consensus 460 ~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~------------lEkQL~eErk~r~~ee~~--- 524 (697)
T PF09726_consen 460 SELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRAS------------LEKQLQEERKARKEEEEK--- 524 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhHHHHh---
Confidence 44677888888888888888888888888888888888888765433 556888899988887752
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHh---hhhhhHHHHHHHHhhHHH
Q 009584 135 LVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLRE---EVDDERKMLQMAEVWREE 211 (531)
Q Consensus 135 L~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~re---E~eeER~MLqmAEvWREE 211 (531)
-++.++.+.+.-. .--|.=|..+.=||.-|+.|-+++..-+..+..|..+...+|. |-+.|-.||..|=.=
T Consensus 525 aar~~~~~~~~r~---e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~a--- 598 (697)
T PF09726_consen 525 AARALAQAQATRQ---ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSA--- 598 (697)
T ss_pred hhhccccchhccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH---
Confidence 2332221111111 1111224445566677777777777777777777766544432 334566666655110
Q ss_pred hhhhhhhhhhhhhHHhhHHHHHHHHHHHHHHhh
Q 009584 212 RVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSS 244 (531)
Q Consensus 212 RVQMKL~dAk~~leeK~s~ldkL~~elE~FL~s 244 (531)
+-|--..||...++=.++.-||=.-|..
T Consensus 599 -----mqdk~~~LE~sLsaEtriKldLfsaLg~ 626 (697)
T PF09726_consen 599 -----MQDKNQHLENSLSAETRIKLDLFSALGD 626 (697)
T ss_pred -----HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 1122235666667777788888887876
No 4
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.70 E-value=0.3 Score=55.75 Aligned_cols=160 Identities=23% Similarity=0.320 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 009584 56 MVAALEAEVEQARTRIQELETE--------------RRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRE 121 (531)
Q Consensus 56 lv~aLk~EL~~Ar~rI~eL~~E--------------~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~E 121 (531)
-|+.|++||.++|..=+||... -+..+++.|.|..++.+=.. .+.+=+..++.|-..|.+|
T Consensus 426 dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~-----aRq~DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 426 DVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQ-----ARQQDKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 3778888888887766666554 22234444444444443322 2233345677777778888
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhh
Q 009584 122 RKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERE------LIEEVCDELAKEIGEDKAEVEALKRESMKLREEV 195 (531)
Q Consensus 122 Rk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRe------llE~vCdELAkeI~edkaEVe~lKres~k~reE~ 195 (531)
|+.|..+|. .|.+-+.+-.+ |.++-+|- ...+.|+-+-..+.+.+.|+..|+++....
T Consensus 501 ~~~R~~lEk-------QL~eErk~r~~-----ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~k---- 564 (697)
T PF09726_consen 501 RRQRASLEK-------QLQEERKARKE-----EEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQK---- 564 (697)
T ss_pred HHHHHHHHH-------HHHHHHHHHhH-----HHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 877777664 22222211111 11222221 011333335557788888888888775532
Q ss_pred hhhHHHHHHHHhh------HH-HhhhhhhhhhhhhhHHhhHHHHH-HHHH
Q 009584 196 DDERKMLQMAEVW------RE-ERVQMKLVDAKVAVEQKYSQMNK-LVAE 237 (531)
Q Consensus 196 eeER~MLqmAEvW------RE-ERVQMKL~dAk~~leeK~s~ldk-L~~e 237 (531)
+|+.+.--.|++ +| +.=..-|.-|=.++.+|+..|+. |.+|
T Consensus 565 -ee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaE 613 (697)
T PF09726_consen 565 -EEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAE 613 (697)
T ss_pred -HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 333333333332 22 22233455566677788777654 5444
No 5
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.57 E-value=0.61 Score=54.84 Aligned_cols=141 Identities=19% Similarity=0.334 Sum_probs=110.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH---------HHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 009584 51 VSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEH---------FLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRE 121 (531)
Q Consensus 51 ~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~---------l~KqlaEEK~awKskE~eki~a~i~slk~ELe~E 121 (531)
+--|.-+.-|+.||.+||...++++.-+..++.++++ |=|.+||||+--=--|-+-.+.-|++|-.+||-=
T Consensus 272 Skim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEIL 351 (1243)
T KOG0971|consen 272 SKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEIL 351 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667889999999999999999888888877765 4588999999877778888888888877666643
Q ss_pred HH---------------hhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHH
Q 009584 122 RK---------------NRQRIEIVNSKLVNELA-------DAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKA 179 (531)
Q Consensus 122 Rk---------------~Rkr~E~ln~KL~~ELa-------e~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edka 179 (531)
|- --+++|.-|.||-.-|- ..|.-..++.|++|+-+-.-.-|+.+-.-|-++|...++
T Consensus 352 KaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs 431 (1243)
T KOG0971|consen 352 KAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAES 431 (1243)
T ss_pred HHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 32 24789999999987764 455666778888888888888888888888888888888
Q ss_pred HHHHHHHhhHHH
Q 009584 180 EVEALKRESMKL 191 (531)
Q Consensus 180 EVe~lKres~k~ 191 (531)
-|-.||..-+.+
T Consensus 432 ~iadlkEQVDAA 443 (1243)
T KOG0971|consen 432 TIADLKEQVDAA 443 (1243)
T ss_pred HHHHHHHHHHHh
Confidence 888888765544
No 6
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.51 E-value=0.93 Score=44.34 Aligned_cols=47 Identities=11% Similarity=0.308 Sum_probs=32.7
Q ss_pred ChHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 009584 33 TPAEVRQIYSHMKHLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKK 84 (531)
Q Consensus 33 ts~el~~v~~~~~leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~e 84 (531)
.+.++-.+||.| -..|+.+|+.|+.|+..-+.+.....+.-.....+
T Consensus 10 af~~iK~YYndI-----T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~e 56 (201)
T PF13851_consen 10 AFQEIKNYYNDI-----TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQE 56 (201)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666778877 56799999999999988777665554444333333
No 7
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.42 E-value=0.59 Score=58.65 Aligned_cols=92 Identities=26% Similarity=0.419 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH--HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 009584 55 SMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVS--EEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVN 132 (531)
Q Consensus 55 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~Kqla--EEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln 132 (531)
.=|+.|+.|+..-+.+|..|.++++.....+.+|.-.+. +||+.--+|-..|+.+.|+++...|+.|++.|..+|...
T Consensus 964 ~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~ 1043 (1930)
T KOG0161|consen 964 NKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAK 1043 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888888888888888888888887777888877665 566677778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 009584 133 SKLVNELADAKVSA 146 (531)
Q Consensus 133 ~KL~~ELae~Kss~ 146 (531)
+||.-||...+.+.
T Consensus 1044 rkle~el~~~~e~~ 1057 (1930)
T KOG0161|consen 1044 RKLEGELKDLQESI 1057 (1930)
T ss_pred HHHHHHHHHhhhHH
Confidence 99999885554443
No 8
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.38 E-value=1.2 Score=53.78 Aligned_cols=117 Identities=17% Similarity=0.180 Sum_probs=70.5
Q ss_pred HHhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhh
Q 009584 122 RKNRQRIEIVNSKL---VNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDE 198 (531)
Q Consensus 122 Rk~Rkr~E~ln~KL---~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~reE~eeE 198 (531)
+....+.+.--..| -.+|.+.+..+...++....=...-+-+...+.++...|.+.+.+++.|..+..++..+.+.-
T Consensus 849 ~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (1311)
T TIGR00606 849 RKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEEL 928 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 44444444434444 455666677777766655554555555556666666777777777777777666665555443
Q ss_pred HHHHHHHHhhHHHhhhhhhhhhhhhhHHhhHHHHHHHHHHHHHHhhcC
Q 009584 199 RKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSRS 246 (531)
Q Consensus 199 R~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~elE~FL~sk~ 246 (531)
+.-.+.. ++..|.++. .|......+..|..+|+.|+...+
T Consensus 929 ~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~i~~y~~~~~ 968 (1311)
T TIGR00606 929 ISSKETS----NKKAQDKVN----DIKEKVKNIHGYMKDIENKIQDGK 968 (1311)
T ss_pred HHHHHHH----HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3332222 355555553 455667788888899999988743
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.30 E-value=2.4 Score=48.85 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=10.7
Q ss_pred hhhhhhhhhhHHhhHHHHHHHHHHHH
Q 009584 215 MKLVDAKVAVEQKYSQMNKLVAELEA 240 (531)
Q Consensus 215 MKL~dAk~~leeK~s~ldkL~~elE~ 240 (531)
.++.+.+..+......++.+..+++.
T Consensus 434 ~~~~~l~~~~~~~~~~l~~l~~~~~~ 459 (1164)
T TIGR02169 434 AKINELEEEKEDKALEIKKQEWKLEQ 459 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444443444444444443
No 10
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.29 E-value=1 Score=54.13 Aligned_cols=179 Identities=23% Similarity=0.282 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH--Hhhhh-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 009584 66 QARTRIQELETERRSSKKKLEHFLRKVSEEKA--AWRSR-EHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADA 142 (531)
Q Consensus 66 ~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~--awKsk-E~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~ 142 (531)
+.+++|-+...+....+..+...-.++.-++. +.|.. .+..++.....++...+..++-++.+|.-+.++-..|.-+
T Consensus 331 ~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~ 410 (1293)
T KOG0996|consen 331 ESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRL 410 (1293)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666555552222 12222 2334777777888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHH-HHHHhhHHH--hhhhhhhh
Q 009584 143 KVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKML-QMAEVWREE--RVQMKLVD 219 (531)
Q Consensus 143 Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~reE~eeER~ML-qmAEvWREE--RVQMKL~d 219 (531)
.+-++++.+++|+.++.+.-+|..-...-..|.+...|++.|.....+.+.++++.+.-| +=++..++| +.|-.|+.
T Consensus 411 ~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~ 490 (1293)
T KOG0996|consen 411 TSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMP 490 (1293)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999888888888888888888777777777776665543 334555554 34556666
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHhh
Q 009584 220 AKVAVEQKYSQMNKLVAELEAFLSS 244 (531)
Q Consensus 220 Ak~~leeK~s~ldkL~~elE~FL~s 244 (531)
....+-+.-+.++-.+.||+-.+..
T Consensus 491 ~~~~~n~~~~e~~vaesel~~L~~~ 515 (1293)
T KOG0996|consen 491 LLKQVNEARSELDVAESELDILLSR 515 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666665554
No 11
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.16 E-value=3.4 Score=49.53 Aligned_cols=42 Identities=40% Similarity=0.464 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHH
Q 009584 151 QDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLR 192 (531)
Q Consensus 151 kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~r 192 (531)
++++.=+....-++..+++|...+.+.+.+++.++.+....+
T Consensus 828 ~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 869 (1163)
T COG1196 828 QEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELE 869 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444444555556677777777777777777777766555444
No 12
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.10 E-value=2.2 Score=51.00 Aligned_cols=136 Identities=25% Similarity=0.318 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 009584 59 ALEAEVEQARTRIQELETERRSSKK----KLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSK 134 (531)
Q Consensus 59 aLk~EL~~Ar~rI~eL~~E~~s~k~----eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~K 134 (531)
++..||......+.....+.+.... +++..+..+ .+.+++-..+...+.+-+..++.++++-...+.++..-...
T Consensus 344 ~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~ 422 (1163)
T COG1196 344 TLLEELEQLLAELEEAKEELEEKLSALLEELEELFEAL-REELAELEAELAEIRNELEELKREIESLEERLERLSERLED 422 (1163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666655555555544444 334333333 33455666777888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhh
Q 009584 135 LVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEV 195 (531)
Q Consensus 135 L~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~reE~ 195 (531)
+..++.++...+...-.+++.-+..-.-+++.+.++...+.+.+.++..+...-.++..++
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 483 (1163)
T COG1196 423 LKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKEL 483 (1163)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887766677777777777777777777777777777777776666655555
No 13
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.02 E-value=0.86 Score=45.68 Aligned_cols=95 Identities=22% Similarity=0.326 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHH-------HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 009584 56 MVAALEAEVEQARTRIQELETERRSSKKK-------LEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRI 128 (531)
Q Consensus 56 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~e-------ie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~ 128 (531)
+-..+..||..+|..|..+..++....-+ ++.|-.++.++ .+.+..+..-|..++.+|+.+...|-.+
T Consensus 48 ~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e-----~~~~~~le~el~~lrk~ld~~~~~r~~l 122 (312)
T PF00038_consen 48 IKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE-----LAERKDLEEELESLRKDLDEETLARVDL 122 (312)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhhhhhhhhhhhhHhHH
Confidence 34455666666666666666555444444 44444444444 3355666677777778888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 129 EIVNSKLVNELADAKVSAKRYMQDYEK 155 (531)
Q Consensus 129 E~ln~KL~~ELae~Kss~~~a~kelE~ 155 (531)
+.--.-|-.||.-.+....+-+.+|..
T Consensus 123 e~~i~~L~eEl~fl~~~heeEi~~L~~ 149 (312)
T PF00038_consen 123 ENQIQSLKEELEFLKQNHEEEIEELRE 149 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 777777777776666555555554443
No 14
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.75 E-value=5.1 Score=45.95 Aligned_cols=30 Identities=33% Similarity=0.517 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 009584 59 ALEAEVEQARTRIQELETERRSSKKKLEHF 88 (531)
Q Consensus 59 aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l 88 (531)
.|+.+++.++..+.++..+......+++.+
T Consensus 681 ~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 710 (1179)
T TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEEL 710 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444433333333333333
No 15
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.69 E-value=5.3 Score=45.82 Aligned_cols=29 Identities=28% Similarity=0.379 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 009584 59 ALEAEVEQARTRIQELETERRSSKKKLEH 87 (531)
Q Consensus 59 aLk~EL~~Ar~rI~eL~~E~~s~k~eie~ 87 (531)
.|..++...+..+.+|.++....+.++..
T Consensus 674 ~l~~e~~~l~~~~~~l~~~l~~~~~~~~~ 702 (1179)
T TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAE 702 (1179)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433333
No 16
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.68 E-value=2.7 Score=42.22 Aligned_cols=77 Identities=25% Similarity=0.365 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHH
Q 009584 54 VSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQR-IEIVN 132 (531)
Q Consensus 54 ~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr-~E~ln 132 (531)
..-+..|+.+++..+.+..+..+.+.....++..|-+.+.++-++. ..+...|+.+++||+.=++.-.. ++.|-
T Consensus 74 ~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r-----~~le~~i~~L~eEl~fl~~~heeEi~~L~ 148 (312)
T PF00038_consen 74 ELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLAR-----VDLENQIQSLKEELEFLKQNHEEEIEELR 148 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhH-----hHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 3447788888888889999899999999999999999999887754 55667788999999887765443 44444
Q ss_pred HHH
Q 009584 133 SKL 135 (531)
Q Consensus 133 ~KL 135 (531)
.++
T Consensus 149 ~~~ 151 (312)
T PF00038_consen 149 EQI 151 (312)
T ss_dssp TT-
T ss_pred hcc
Confidence 333
No 17
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.15 E-value=7.3 Score=43.93 Aligned_cols=35 Identities=31% Similarity=0.496 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRK 91 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~Kq 91 (531)
...|+.++..-+.+|.+|.++-...+++++.|..+
T Consensus 159 ~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~ 193 (546)
T PF07888_consen 159 NEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQ 193 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555544443
No 18
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.02 E-value=4.9 Score=48.14 Aligned_cols=110 Identities=26% Similarity=0.360 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHhhHH-Hhh
Q 009584 135 LVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWRE-ERV 213 (531)
Q Consensus 135 L~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~reE~eeER~MLqmAEvWRE-ERV 213 (531)
|.+||..+|.-+...-+++|+-....+.|.--|++|-++|..++...+.+......+-.|+..=+- -+..+-.+ .-+
T Consensus 792 l~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~--kv~~~~~~~~~~ 869 (1174)
T KOG0933|consen 792 LEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEA--KVDKVEKDVKKA 869 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHhHHHHH
Confidence 455555555555556666666666666666666666666666655555555444433333311111 01110000 112
Q ss_pred hhhhhhhhhhhHHhhHHHHHHHHHHHHHHhhcC
Q 009584 214 QMKLVDAKVAVEQKYSQMNKLVAELEAFLSSRS 246 (531)
Q Consensus 214 QMKL~dAk~~leeK~s~ldkL~~elE~FL~sk~ 246 (531)
|-.|.+-+.-+-+=...++.+..+.|.|+..+.
T Consensus 870 ~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~ 902 (1174)
T KOG0933|consen 870 QAELKDQKAKQRDIDTEISGLLTSQEKCLSEKS 902 (1174)
T ss_pred HHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhh
Confidence 333333333344445566677777788877753
No 19
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.97 E-value=6 Score=48.15 Aligned_cols=111 Identities=16% Similarity=0.240 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 009584 60 LEAEVEQARTRIQELETERRS-----SKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSK 134 (531)
Q Consensus 60 Lk~EL~~Ar~rI~eL~~E~~s-----~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~K 134 (531)
+-.||+.+..+.+-.+.+-+. .++++.-. +++++-...+..++.+-|+.+++||++..+-..++-.-+.|
T Consensus 466 ~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~-----~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~k 540 (1317)
T KOG0612|consen 466 MDKELEETIEKLKSEESELQREQKALLQHEQKEV-----EEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEK 540 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334666666655444444443 22333333 34444445567888999999999999999988888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009584 135 LVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIG 175 (531)
Q Consensus 135 L~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~ 175 (531)
+..+..++..+..-+.-+.+..+|-|...++.|..+-.+..
T Consensus 541 v~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e 581 (1317)
T KOG0612|consen 541 VNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELE 581 (1317)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhh
Confidence 99888888888888888899999999999999988765544
No 20
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.75 E-value=6.1 Score=44.52 Aligned_cols=130 Identities=22% Similarity=0.275 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHH------HH---HHHHHHHHHHHHHHHHhhhhHHH
Q 009584 60 LEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHE------KI---RAFIDDLKAEISRERKNRQRIEI 130 (531)
Q Consensus 60 Lk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~e------ki---~a~i~slk~ELe~ERk~Rkr~E~ 130 (531)
-.+||-.||.-|.+-.+++-....+|..|--.+.+=|.-|-.++++ ++ ...+-.+.+|+.-=++..+.+|.
T Consensus 90 ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~ 169 (546)
T KOG0977|consen 90 YEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALED 169 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 3566666666666666666666666665555555555555554332 22 35567788888888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----ccHHHHHHHHHhhH
Q 009584 131 VNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIG----EDKAEVEALKRESM 189 (531)
Q Consensus 131 ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~----edkaEVe~lKres~ 189 (531)
-...|.+|..-....+..+.+.++.|.-.|.-++.-|..|-.+|. .++.||+++++...
T Consensus 170 e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~ 232 (546)
T KOG0977|consen 170 ELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKAR 232 (546)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 999999999999999999999999999999888888887776664 45566666655433
No 21
>PRK09039 hypothetical protein; Validated
Probab=94.73 E-value=4.2 Score=42.76 Aligned_cols=140 Identities=16% Similarity=0.264 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLV 136 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 136 (531)
|+.++.||+...++|.+|-.--...+. ....+...|..|+..|+.=+..|.+++.....+.
T Consensus 48 i~~~~~eL~~L~~qIa~L~e~L~le~~-------------------~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~ 108 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELADLLSLERQ-------------------GNQDLQDSVANLRASLSAAEAERSRLQALLAELA 108 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 789999999999999874322221111 2244455566666666655566666666555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHhhHHHhhhhh
Q 009584 137 NELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMK 216 (531)
Q Consensus 137 ~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~reE~eeER~MLqmAEvWREERVQMK 216 (531)
....+++..+...-.+|..++. +-.|--..|.-.+++|++||.... ++|.-
T Consensus 109 ~~~~~~~~~~~~l~~~L~~~k~-------~~se~~~~V~~L~~qI~aLr~Qla----------------------~le~~ 159 (343)
T PRK09039 109 GAGAAAEGRAGELAQELDSEKQ-------VSARALAQVELLNQQIAALRRQLA----------------------ALEAA 159 (343)
T ss_pred hhcchHHHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHHHHHHH----------------------HHHHH
Confidence 4444444444443333333222 222333334444444444444422 34455
Q ss_pred hhhhhhhhHHhhHHHHHHHHHHHHHHhh
Q 009584 217 LVDAKVAVEQKYSQMNKLVAELEAFLSS 244 (531)
Q Consensus 217 L~dAk~~leeK~s~ldkL~~elE~FL~s 244 (531)
|.+++....+....++.|..+|++=|..
T Consensus 160 L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 160 LDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666677776666644
No 22
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.66 E-value=8.5 Score=42.58 Aligned_cols=67 Identities=28% Similarity=0.321 Sum_probs=34.7
Q ss_pred HHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHhhHHHhhhhhhhhhhhhhHHhhHHHHHHHHHHHHHHh
Q 009584 169 ELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLS 243 (531)
Q Consensus 169 ELAkeI~edkaEVe~lKres~k~reE~eeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~elE~FL~ 243 (531)
++..+..+-+.+.+.++.+..+++.|++.=+..+.-++ +||..|.-.++.-.+.-.....+|.+.-.
T Consensus 376 ql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E--------~rL~aa~ke~eaaKasEa~Ala~ik~l~e 442 (522)
T PF05701_consen 376 QLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAE--------ERLEAALKEAEAAKASEALALAEIKALSE 442 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344444455555555555555566666665655553 44444444444444444555555555433
No 23
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.83 E-value=8.7 Score=41.42 Aligned_cols=38 Identities=24% Similarity=0.366 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhc
Q 009584 139 LADAKVSAKRYMQDYEKERKERELIEE--VCDELAKEIGE 176 (531)
Q Consensus 139 Lae~Kss~~~a~kelE~ERkaRellE~--vCdELAkeI~e 176 (531)
|.+++.....+-.+++.-.+....++. .|.---+.+.+
T Consensus 257 L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~ 296 (562)
T PHA02562 257 LNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISE 296 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCC
Confidence 334444555555555555555555543 44433333333
No 24
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.78 E-value=11 Score=41.75 Aligned_cols=148 Identities=23% Similarity=0.347 Sum_probs=72.8
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHhhHHHHHHh--hhhHHHHHHHHHHHHHHH
Q 009584 46 HLDQQVSAVSMVAALEAEVEQARTRIQELETER------RSSKKKLEHFLRKVSEEKAAW--RSREHEKIRAFIDDLKAE 117 (531)
Q Consensus 46 leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~------~s~k~eie~l~KqlaEEK~aw--KskE~eki~a~i~slk~E 117 (531)
|+-+-..+...|..|+.||..+.. .++..+. ...+..+..+...|.+=|..- -.-|-..++..+.+|+.|
T Consensus 240 Le~kL~~a~~~l~~Lq~El~~~~~--~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~E 317 (522)
T PF05701_consen 240 LESKLAEASAELESLQAELEAAKE--SKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSE 317 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444566788888888888887 3333311 111122333333333332221 123556677888888888
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhh
Q 009584 118 ISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEV 195 (531)
Q Consensus 118 Le~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~reE~ 195 (531)
|+.++..-.++..--..........+.-+.++..+|+.=+-.-.-..+..++|...+.....|.+..|.+...++.|+
T Consensus 318 Le~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~ 395 (522)
T PF05701_consen 318 LEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEV 395 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877765433322211111112222222233333333221111111223456677777777777777777666555554
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=93.34 E-value=28 Score=44.74 Aligned_cols=115 Identities=17% Similarity=0.308 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHH--HHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEK--AAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSK 134 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK--~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~K 134 (531)
++.|+..++.-...+.+|..-.....+++..|-+++.+.. .+--++....+...|++++.+|+.|-|.+--+....++
T Consensus 1247 l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~ 1326 (1930)
T KOG0161|consen 1247 LSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQ 1326 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666667777889999999987654 44456667777888999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH
Q 009584 135 LVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDK 178 (531)
Q Consensus 135 L~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edk 178 (531)
|-.|+... ...||.+-..+..++.---....++.+++
T Consensus 1327 l~~e~~~l-------~e~leee~e~~~~l~r~lsk~~~e~~~~~ 1363 (1930)
T KOG0161|consen 1327 LEHELDLL-------REQLEEEQEAKNELERKLSKANAELAQWK 1363 (1930)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87775443 34555555555544444444444443333
No 26
>PRK02224 chromosome segregation protein; Provisional
Probab=93.07 E-value=20 Score=41.14 Aligned_cols=9 Identities=22% Similarity=0.224 Sum_probs=4.1
Q ss_pred Ccchhhhcc
Q 009584 284 DIFSVFEDV 292 (531)
Q Consensus 284 D~~sifeel 292 (531)
-+..+|..+
T Consensus 742 ~~~~~~~~~ 750 (880)
T PRK02224 742 MLNETFDLV 750 (880)
T ss_pred HHHHHHHHH
Confidence 344455544
No 27
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.52 E-value=12 Score=45.71 Aligned_cols=91 Identities=21% Similarity=0.145 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHH
Q 009584 105 EKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEAL 184 (531)
Q Consensus 105 eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~l 184 (531)
+.+++.+..+.++|...-+-=-++.+-.+-.--||...+.....+++.++.=+.+=..+..--.|..-+|.+.+.++..+
T Consensus 475 ~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~ 554 (1293)
T KOG0996|consen 475 EGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSL 554 (1293)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34444444444554444333333333334444566667777777777777777777777777777778888888888888
Q ss_pred HHhhHHHHhhh
Q 009584 185 KRESMKLREEV 195 (531)
Q Consensus 185 Kres~k~reE~ 195 (531)
|.+...+..++
T Consensus 555 k~e~~~~~k~l 565 (1293)
T KOG0996|consen 555 KQELKEKEKEL 565 (1293)
T ss_pred HHHHHHHHHhH
Confidence 88776665555
No 28
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=92.38 E-value=1.8 Score=42.83 Aligned_cols=89 Identities=22% Similarity=0.433 Sum_probs=59.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhhhccHHHHHHHHHhhHHHHh
Q 009584 125 RQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERE-----------LIEEVCDELAKEIGEDKAEVEALKRESMKLRE 193 (531)
Q Consensus 125 Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRe-----------llE~vCdELAkeI~edkaEVe~lKres~k~re 193 (531)
--+--..++|+..-|+.+...-.+.+.+||.||+... +||.-.+.|-+.|...++.+..+-++..|...
T Consensus 90 ~~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~ 169 (192)
T PF09727_consen 90 MEHQKKMQRRMLEQLAAAEKRHRRTIQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVS 169 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344457888999999999999999999999999876 55666666666666666666666666666555
Q ss_pred hhhhhHH-HHHHHHhhHHHhh
Q 009584 194 EVDDERK-MLQMAEVWREERV 213 (531)
Q Consensus 194 E~eeER~-MLqmAEvWREERV 213 (531)
-+++|+. -=||+=..-+||-
T Consensus 170 ~l~eE~~k~K~~~l~Lv~E~k 190 (192)
T PF09727_consen 170 QLEEERTKLKSFVLMLVKERK 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 5544443 2233333444443
No 29
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.89 E-value=28 Score=42.17 Aligned_cols=185 Identities=22% Similarity=0.326 Sum_probs=115.0
Q ss_pred HHHHHhhhhcc-cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHH---
Q 009584 35 AEVRQIYSHMK-HLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAF--- 110 (531)
Q Consensus 35 ~el~~v~~~~~-leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~--- 110 (531)
.|+.-+.+.+. |+++-.++.--=.-+..+|+.++..+..|..+ -++|++.++-+-+||..-+.++.+-++.-
T Consensus 230 rEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~----i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~l 305 (1200)
T KOG0964|consen 230 RELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCE----IKELENKLTNLREEKEQLKARETKISKKKTKL 305 (1200)
T ss_pred hHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34555555665 44444332222245667889999999998885 45677777777788877777665555444
Q ss_pred ---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHH-HHHHHhhhc---
Q 009584 111 ---IDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEK----ERKERE---LIEEVC-DELAKEIGE--- 176 (531)
Q Consensus 111 ---i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~----ERkaRe---llE~vC-dELAkeI~e--- 176 (531)
|.++.++++..+.-|......+.++..++.+-+--+++....|.. |.+.+. .+++-- |=+||. |.
T Consensus 306 el~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kq-gr~sq 384 (1200)
T KOG0964|consen 306 ELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQ-GRYSQ 384 (1200)
T ss_pred hhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh-ccccc
Confidence 789999999999999999999999998888777776665554432 222222 222211 112221 11
Q ss_pred ----------cHHHHHHHHHhhHHHHhhhhhhHHHHHHHHhhHHHhhhhhhhhhhhhhHHhhHHHHHHHHHHH
Q 009584 177 ----------DKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELE 239 (531)
Q Consensus 177 ----------dkaEVe~lKres~k~reE~eeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~elE 239 (531)
.+.|++.|++-.. - --=++.-.||-+.+++..+.+|...+..|...|.
T Consensus 385 Fssk~eRDkwir~ei~~l~~~i~-------------~--~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~ 442 (1200)
T KOG0964|consen 385 FSSKEERDKWIRSEIEKLKRGIN-------------D--TKEQENILQKEIEDLESELKEKLEEIKELESSIN 442 (1200)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHh-------------h--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 1122222222111 0 0114566788899999999999888877766554
No 30
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.87 E-value=40 Score=41.69 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=20.5
Q ss_pred hhhhhhhhHHhhHHHHHHHHHHHHHHhh
Q 009584 217 LVDAKVAVEQKYSQMNKLVAELEAFLSS 244 (531)
Q Consensus 217 L~dAk~~leeK~s~ldkL~~elE~FL~s 244 (531)
..+-.-+|+.|-++|..|..+|+..|+.
T Consensus 1719 y~~~~~~L~~~~aeL~~Le~r~~~vl~~ 1746 (1758)
T KOG0994|consen 1719 YLRNEQALEDKAAELAGLEKRVESVLDH 1746 (1758)
T ss_pred HhhhhHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4444456778888888888888888776
No 31
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.31 E-value=17 Score=42.10 Aligned_cols=236 Identities=19% Similarity=0.222 Sum_probs=0.0
Q ss_pred CcCCCCChHHHHHhhhhcc-cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH---------HHH
Q 009584 27 NPVCLKTPAEVRQIYSHMK-HLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVS---------EEK 96 (531)
Q Consensus 27 d~~~lkts~el~~v~~~~~-leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~Kqla---------EEK 96 (531)
+...+..+..+..=+++.| .+.++++- +.-+..-|-+-...++.+.+.+..+..++.+|++.+- ..+
T Consensus 351 ~~~t~~s~~~~~~r~~q~lke~~k~~~~---ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~ 427 (716)
T KOG4593|consen 351 KNSTVTSPARGLERARQLLKEELKQVAG---ITEEETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRLAEE 427 (716)
T ss_pred ccccccCcccchHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q ss_pred HHhhhhHHHHHHHHH-----HHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 97 AAWRSREHEKIRAFI-----DDLKAEISRERKNRQRIEIVNS--KLVNELADAKVSAKRYMQDYEKERKERELIEEVCDE 169 (531)
Q Consensus 97 ~awKskE~eki~a~i-----~slk~ELe~ERk~Rkr~E~ln~--KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdE 169 (531)
.---.++.+.+.+.| ..+..|-..+--.+.=....++ +|..++.+..+.+...-+++...|+.++++-.--+.
T Consensus 428 l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~ 507 (716)
T KOG4593|consen 428 LPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQ 507 (716)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q ss_pred HHHhhhccHHHHHHHHHhhHHHHhhhhhhHH---HHHHHHhhHHHhhhhhhhhhhhhhHHhhHHHHHHHHHHHHHHhh-c
Q 009584 170 LAKEIGEDKAEVEALKRESMKLREEVDDERK---MLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSS-R 245 (531)
Q Consensus 170 LAkeI~edkaEVe~lKres~k~reE~eeER~---MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~elE~FL~s-k 245 (531)
+++++...+.|=..|+-..+.-.-.-+.+-. +|||.. .--++.....|+ .+..|++|+++-..- +
T Consensus 508 ~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~rVl~~~~----------npt~~~~~~~k~-~~e~LqaE~~~lk~~l~ 576 (716)
T KOG4593|consen 508 YLKELELLEEENDRLRAQLERRLLQGDYEENITRVLHMST----------NPTSKARQIKKN-RLEELQAELERLKERLT 576 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecC----------CchHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q ss_pred CCCCchhHHHHHHHHHHHhhcccccccccccc
Q 009584 246 SINPDIQEMKEAEMLRQAAASVNIQEIKEFTY 277 (531)
Q Consensus 246 ~~~~d~~~~r~a~~~rqs~~Sv~~~~ike~sy 277 (531)
.-..|.+.++++.-.-.++-.. ..+|..|.|
T Consensus 577 ~le~~~~~~~d~~i~~~s~~~~-~~ev~qlk~ 607 (716)
T KOG4593|consen 577 ALEGDKMQFRDGEIAVHSLLAF-SKEVAQLKK 607 (716)
T ss_pred HHhccCCcccchhhHHhhhhcc-hHHHHHHHH
No 32
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=91.02 E-value=39 Score=41.09 Aligned_cols=189 Identities=21% Similarity=0.302 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLV 136 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 136 (531)
+.+++.|.......|++-...-+..++.++.+-|++++.+..- ...+..-+..+..+++.=.+-...+|.++.+|.
T Consensus 346 ~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~----~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~ 421 (1074)
T KOG0250|consen 346 LDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT----NNELGSELEERENKLEQLKKEVEKLEEQINSLR 421 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333444455555555555543321 111222222222222222233334444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHh-hHHHHhhhhhhHHHHHHHHhhHHHhhh-
Q 009584 137 NELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRE-SMKLREEVDDERKMLQMAEVWREERVQ- 214 (531)
Q Consensus 137 ~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKre-s~k~reE~eeER~MLqmAEvWREERVQ- 214 (531)
.|+-+ +..++..+...+.-++.--.-|.+.|..+..++..||.- ..++ .-+-..|-++=..-...--|
T Consensus 422 ~e~~~-------~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkv---s~FG~~m~~lL~~I~r~~~~f 491 (1074)
T KOG0250|consen 422 EELNE-------VKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKV---SAFGPNMPQLLRAIERRKRRF 491 (1074)
T ss_pred HHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh---hhcchhhHHHHHHHHHHHhcC
Confidence 55544 445556666666677777778888888888888888753 3333 23445555554443333322
Q ss_pred -----------hhhhhhhhhhHHhhHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHhhcccccc
Q 009584 215 -----------MKLVDAKVAVEQKYSQMNKLVAELEAFLSSRSINPDIQEMKEAEMLRQAAASVNIQE 271 (531)
Q Consensus 215 -----------MKL~dAk~~leeK~s~ldkL~~elE~FL~sk~~~~d~~~~r~a~~~rqs~~Sv~~~~ 271 (531)
|.|.+-|.+ .++=.-|..=|-+|+=+.- .|+..+|.-+.+..+..
T Consensus 492 ~~~P~GPlG~~Vtl~~~KWa----~aIE~~L~n~lnaFiv~sh--------~D~~~Lr~i~~~~~~~~ 547 (1074)
T KOG0250|consen 492 QTPPKGPLGKYVTLKEPKWA----LAIERCLGNLLNAFIVTSH--------KDARILRAIMRRLKIPG 547 (1074)
T ss_pred CCCCCCCccceeEecCcHHH----HHHHHHHHHhhhhheeCCH--------hhHHHHHHHHHHcCCCC
Confidence 223333332 1233335555555654422 35666666666666554
No 33
>PRK11637 AmiB activator; Provisional
Probab=90.48 E-value=27 Score=37.26 Aligned_cols=39 Identities=13% Similarity=0.283 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHH
Q 009584 56 MVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSE 94 (531)
Q Consensus 56 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaE 94 (531)
-+..|..+|..+...|.++.++......+|+.+-+++.+
T Consensus 76 ~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~ 114 (428)
T PRK11637 76 QLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAK 114 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555444443
No 34
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=90.25 E-value=16 Score=34.20 Aligned_cols=93 Identities=20% Similarity=0.368 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 009584 57 VAALEAEVEQARTRI-------QELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIE 129 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI-------~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E 129 (531)
+.+|++|.+.|..++ ++|+++.-....+|..|-+++.-= -.+-+++...|..++..|+.--+....+|
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~l-----E~eld~~~~~l~~~k~~lee~~~~~~~~E 76 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQL-----EEELDKLEEQLKEAKEKLEESEKRKSNAE 76 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Confidence 356777766665554 455555555556677776654321 22568999999999999999999999999
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHH
Q 009584 130 IVNSKLV---NELADAKVSAKRYMQDYE 154 (531)
Q Consensus 130 ~ln~KL~---~ELae~Kss~~~a~kelE 154 (531)
.||+|+. .||..+...+.-+...|.
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999964 566666655555554443
No 35
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=89.75 E-value=52 Score=39.40 Aligned_cols=121 Identities=19% Similarity=0.265 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh-----------hHHHHHHHHH
Q 009584 68 RTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQ-----------RIEIVNSKLV 136 (531)
Q Consensus 68 r~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rk-----------r~E~ln~KL~ 136 (531)
...|.|+--..+..-++|+--|+++.--... =.+|.--..-.|..++.+|+.+++.|- =++..|.||.
T Consensus 251 ~s~i~E~d~~lq~sak~ieE~m~qlk~kns~-L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmklt 329 (1265)
T KOG0976|consen 251 CSMIEEQDMDLQASAKEIEEKMRQLKAKNSV-LGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLT 329 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 3444444444444445555445444221111 123444445568889999999998764 4678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhccHHHHHHHHHhhH
Q 009584 137 NELADAKVSAKRYMQDYEKERKERELIEEVCDEL---AKEIGEDKAEVEALKRESM 189 (531)
Q Consensus 137 ~ELae~Kss~~~a~kelE~ERkaRellE~vCdEL---AkeI~edkaEVe~lKres~ 189 (531)
++.+++..++..+...+|-=-.-+.=||+--|.+ |+.|.+.+.-|+.+++-..
T Consensus 330 rqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~ 385 (1265)
T KOG0976|consen 330 RQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLL 385 (1265)
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999988877665433322222222222222221 3455555555555555433
No 36
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=89.35 E-value=50 Score=38.66 Aligned_cols=111 Identities=28% Similarity=0.370 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hccHHHHHHHHHhhHHHHhhhhhhHHHHH
Q 009584 127 RIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEI---GEDKAEVEALKRESMKLREEVDDERKMLQ 203 (531)
Q Consensus 127 r~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI---~edkaEVe~lKres~k~reE~eeER~MLq 203 (531)
.+|.--++|-.||.|.|..=.+.++||-.= |+--=-|=|.| +.-.-|.|.||++..++.||.+.=+-=|.
T Consensus 73 ~~e~~~~~lr~e~ke~K~rE~rll~dysel-------EeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qle 145 (717)
T PF09730_consen 73 DLELERKRLREEIKEYKFREARLLQDYSEL-------EEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLE 145 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555678888888888888888877431 22222244444 44556888888888876666532222111
Q ss_pred HHHhhHHHhhhhhhhhhhhhhHHhhHHHHHHHHHHHHHHhhc
Q 009584 204 MAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSR 245 (531)
Q Consensus 204 mAEvWREERVQMKL~dAk~~leeK~s~ldkL~~elE~FL~sk 245 (531)
-|..+++ =-+-+|.||=.+|..=-.+=.-|+-||..|+..-
T Consensus 146 e~~rLk~-iae~qleEALesl~~EReqk~~LrkEL~~~~~~~ 186 (717)
T PF09730_consen 146 EAARLKE-IAEKQLEEALESLKSEREQKNALRKELDQHLNIE 186 (717)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 1111111 0113455555555544445556788888887763
No 37
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=89.32 E-value=65 Score=39.90 Aligned_cols=93 Identities=26% Similarity=0.364 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-------------HHH----HHHHHHHHHHHHHHHHH
Q 009584 101 SREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAK-------------VSA----KRYMQDYEKERKERELI 163 (531)
Q Consensus 101 skE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~K-------------ss~----~~a~kelE~ERkaRell 163 (531)
.+.+..+.++.++++.|.++++|+|.+.+-+.+.|-.++.++. +.+ ++....+|++++.+--+
T Consensus 542 ~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~ 621 (1317)
T KOG0612|consen 542 NSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEI 621 (1317)
T ss_pred HHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566778889999999999999999999988877776221 111 12223344445544444
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHhhHHHHh
Q 009584 164 EEVCDELAKEIGEDKAEVEALKRESMKLRE 193 (531)
Q Consensus 164 E~vCdELAkeI~edkaEVe~lKres~k~re 193 (531)
-..-.++-..|...+..+++++.+..|+.+
T Consensus 622 ~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 622 SEIIAELKEEISSLEETLKAGKKELLKVEE 651 (1317)
T ss_pred HHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence 444455555566666666666666666544
No 38
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=89.30 E-value=20 Score=34.09 Aligned_cols=66 Identities=21% Similarity=0.418 Sum_probs=47.7
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHH
Q 009584 123 KNRQRIEIVNSKLVNELADAKVSAKR-------YMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMK 190 (531)
Q Consensus 123 k~Rkr~E~ln~KL~~ELae~Kss~~~-------a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k 190 (531)
++++.++.++.+|..|+..+++.++- -+++.......+ +.++-.++..+|++.+.++|.+|-+..+
T Consensus 84 ~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~k--i~e~~~ki~~ei~~lr~~iE~~K~~~lr 156 (177)
T PF07798_consen 84 KLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELK--IQELNNKIDTEIANLRTEIESLKWDTLR 156 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888888888888887776542 233333333333 7888889999999999999998876554
No 39
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=88.80 E-value=27 Score=41.49 Aligned_cols=93 Identities=16% Similarity=0.240 Sum_probs=52.5
Q ss_pred CCChHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHH-
Q 009584 31 LKTPAEVRQIYSHMKHLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRA- 109 (531)
Q Consensus 31 lkts~el~~v~~~~~leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a- 109 (531)
++.+.+...|++++. +-..-.+|-+..+--+||.+-..|+--.--++....+.+.+++...+=-..--+|++..|..
T Consensus 846 ~kns~k~~ei~s~lk--e~r~e~~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~sk~~q~~~e~ 923 (1259)
T KOG0163|consen 846 LKNSLKTIEILSRLK--EGREEIISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDSKEQQQIEEL 923 (1259)
T ss_pred HHhhHHHHHHHHHHh--cchHHHHhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 455666777777775 23344556677777788887777773222333344445555554443333333344444433
Q ss_pred -HHHHHHHHHHHHHHhh
Q 009584 110 -FIDDLKAEISRERKNR 125 (531)
Q Consensus 110 -~i~slk~ELe~ERk~R 125 (531)
.++.+.+.+|.||+.|
T Consensus 924 er~rk~qE~~E~ER~rr 940 (1259)
T KOG0163|consen 924 ERLRKIQELAEAERKRR 940 (1259)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 2456677777887654
No 40
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=88.72 E-value=27 Score=34.68 Aligned_cols=133 Identities=23% Similarity=0.347 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh--HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKV--SEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSK 134 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~Kql--aEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~K 134 (531)
|..|...|..|.....+..+--.-....+..+-..| +++|+ +.+..-|..|..+|..=...-+.+|.--.+
T Consensus 94 i~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~-------e~~E~ki~eLE~el~~~~~~lk~lE~~~~~ 166 (237)
T PF00261_consen 94 IEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERA-------EAAESKIKELEEELKSVGNNLKSLEASEEK 166 (237)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhchhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 445555555555555554444333333333333333 22333 444444555555554444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhh
Q 009584 135 LVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVD 196 (531)
Q Consensus 135 L~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~reE~e 196 (531)
...-......-+...-..|..=-..-+..|.-|..|-+.|...+.++...|.+...+..|++
T Consensus 167 ~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 167 ASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333333333333333333334455677788888888888888888888888888877774
No 41
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=88.69 E-value=58 Score=38.48 Aligned_cols=181 Identities=23% Similarity=0.337 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH----------HHHHHh-hhhHHHHHHHHHHHHHHHHHHHH---
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVS----------EEKAAW-RSREHEKIRAFIDDLKAEISRER--- 122 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~Kqla----------EEK~aw-KskE~eki~a~i~slk~ELe~ER--- 122 (531)
+.-|+..|+.++.+|.-+.++......+|+.|.-.|. +.-..+ .-.+.+-...-++++....+-+.
T Consensus 130 l~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~ 209 (775)
T PF10174_consen 130 LERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEA 209 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4556666666777777777766666667776666541 111111 11222222222333333333333
Q ss_pred ----------------------------HhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 009584 123 ----------------------------KNRQRIEIVNSKLVNELADAKVSAK-------RYMQDYEKERKERELIEEVC 167 (531)
Q Consensus 123 ----------------------------k~Rkr~E~ln~KL~~ELae~Kss~~-------~a~kelE~ERkaRellE~vC 167 (531)
-.-..+|..+++|-.|+.-.++-+. ...+++|-.+-....|-.=|
T Consensus 210 r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~ 289 (775)
T PF10174_consen 210 REQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKM 289 (775)
T ss_pred hHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHH
Confidence 1123455666666666666655222 22357777777777777779
Q ss_pred HHHHHhhhccHHHHHHHHHhhHHH--------------Hhhh---hhhHHHHHHHHhhHHHhhhhhhhhhhhhhHHhhHH
Q 009584 168 DELAKEIGEDKAEVEALKRESMKL--------------REEV---DDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQ 230 (531)
Q Consensus 168 dELAkeI~edkaEVe~lKres~k~--------------reE~---eeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ 230 (531)
|.+..+++.-++|+.+|..+..-. ++.+ +.+..||| +|| ||++-+|.++...++.|...
T Consensus 290 d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lq-sdv---e~Lr~rle~k~~~l~kk~~~ 365 (775)
T PF10174_consen 290 DRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQ-SDV---EALRFRLEEKNSQLEKKQAQ 365 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhH---HHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888876654422 1111 33333444 222 45555555555555555555
Q ss_pred HHHHHHHHHHH
Q 009584 231 MNKLVAELEAF 241 (531)
Q Consensus 231 ldkL~~elE~F 241 (531)
+.++..|+..+
T Consensus 366 ~~~~qeE~~~~ 376 (775)
T PF10174_consen 366 IEKLQEEKSRL 376 (775)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 42
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=88.37 E-value=70 Score=39.04 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=12.4
Q ss_pred hhHHhhHHHHHHHHHHHHHHhh
Q 009584 223 AVEQKYSQMNKLVAELEAFLSS 244 (531)
Q Consensus 223 ~leeK~s~ldkL~~elE~FL~s 244 (531)
.++++...++....+++.||..
T Consensus 852 ~le~~~~~~~~~~~~~~~~l~~ 873 (1201)
T PF12128_consen 852 ELEEELKALEEQLEQLEEQLRR 873 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666663
No 43
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=88.31 E-value=70 Score=39.02 Aligned_cols=12 Identities=33% Similarity=0.479 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 009584 59 ALEAEVEQARTR 70 (531)
Q Consensus 59 aLk~EL~~Ar~r 70 (531)
+|+.+|..+..+
T Consensus 604 ~L~~~l~~~~~~ 615 (1201)
T PF12128_consen 604 ELRERLEQAEDQ 615 (1201)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 44
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=87.35 E-value=51 Score=37.68 Aligned_cols=101 Identities=17% Similarity=0.271 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhccHH
Q 009584 103 EHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEV---CDELAKEIGEDKA 179 (531)
Q Consensus 103 E~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~v---CdELAkeI~edka 179 (531)
|.+.++..|+.+..+++.=..-.+.+..-...+..|+.+.+......-++|.--+|+-+||.+- -..|..-|..-.+
T Consensus 329 el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~ 408 (594)
T PF05667_consen 329 ELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQ 408 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333333344444444455444444444444444444444444321 1233333444445
Q ss_pred HHHHHHHhhHHHHhhhhhhHHHHH
Q 009584 180 EVEALKRESMKLREEVDDERKMLQ 203 (531)
Q Consensus 180 EVe~lKres~k~reE~eeER~MLq 203 (531)
.+..|..+-++.|..+.+|-+.|.
T Consensus 409 rl~~L~~qWe~~R~pL~~e~r~lk 432 (594)
T PF05667_consen 409 RLVELAQQWEKHRAPLIEEYRRLK 432 (594)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 555556655556655555555554
No 45
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=86.99 E-value=5.4 Score=41.53 Aligned_cols=50 Identities=28% Similarity=0.312 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhh
Q 009584 146 AKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEV 195 (531)
Q Consensus 146 ~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~reE~ 195 (531)
+...-++-+...+.=+-+|.-+++|.++|.+.++|...|+++-.+.|.+.
T Consensus 52 l~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~ 101 (314)
T PF04111_consen 52 LEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREY 101 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444455777788888888888888888876655544443
No 46
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=86.74 E-value=17 Score=41.58 Aligned_cols=121 Identities=23% Similarity=0.295 Sum_probs=73.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 009584 52 SAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIV 131 (531)
Q Consensus 52 s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~l 131 (531)
.-.+.|..+-.||+.|+.+|..|++|. ++|.-|++...-.-+...-+-|.+ +.--|.. .+++
T Consensus 232 ~k~aev~lim~eLe~aq~ri~~lE~e~-------e~L~~ql~~~N~~~~~~~~~~i~~----~~~~L~~-------kd~~ 293 (629)
T KOG0963|consen 232 AKAAEVSLIMTELEDAQQRIVFLEREV-------EQLREQLAKANSSKKLAKIDDIDA----LGSVLNQ-------KDSE 293 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhhhhhccCCchHH----HHHHHhH-------HHHH
Confidence 445678888899999999999998865 444445544433222221122222 2222332 7888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhccHHHHHHHHHh--hHHHHhhhhhhHHHHH
Q 009584 132 NSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELA---KEIGEDKAEVEALKRE--SMKLREEVDDERKMLQ 203 (531)
Q Consensus 132 n~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELA---keI~edkaEVe~lKre--s~k~reE~eeER~MLq 203 (531)
|.+|..++-..++|+.. .+|..|..++ ++...+..+++.|+.+ +....+|+..|-.+|+
T Consensus 294 i~~L~~di~~~~~S~~~-------------e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk 357 (629)
T KOG0963|consen 294 IAQLSNDIERLEASLVE-------------EREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILK 357 (629)
T ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH
Confidence 88888887776666543 3444454443 3444555666666665 3345678888888887
No 47
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=86.72 E-value=27 Score=33.33 Aligned_cols=94 Identities=21% Similarity=0.379 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHHhhhhHHHHH
Q 009584 55 SMVAALEAEVEQAR-TRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEIS-RERKNRQRIEIVN 132 (531)
Q Consensus 55 Slv~aLk~EL~~Ar-~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe-~ERk~Rkr~E~ln 132 (531)
+.++.|+.|+...+ .++..|.++....+++++.|-.+|.+|-..=++ -++--+..-|.++. .-+....+...+|
T Consensus 58 a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a----~~klD~n~eK~~~r~e~~~~~~ki~e~~ 133 (177)
T PF07798_consen 58 AAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLRA----EVKLDLNLEKGRIREEQAKQELKIQELN 133 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 55677888886654 667777777788888888888777776321111 11111222222321 2234566788899
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 009584 133 SKLVNELADAKVSAKRYMQD 152 (531)
Q Consensus 133 ~KL~~ELae~Kss~~~a~ke 152 (531)
.|+..|++.+++.+..+.-+
T Consensus 134 ~ki~~ei~~lr~~iE~~K~~ 153 (177)
T PF07798_consen 134 NKIDTEIANLRTEIESLKWD 153 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999988777665433
No 48
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.57 E-value=90 Score=38.38 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHH
Q 009584 58 AALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSE 94 (531)
Q Consensus 58 ~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaE 94 (531)
..|..++...+..|.++..+......+++.+...+.+
T Consensus 891 ~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1311)
T TIGR00606 891 VELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEE 927 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444433
No 49
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=86.55 E-value=22 Score=38.82 Aligned_cols=164 Identities=29% Similarity=0.384 Sum_probs=87.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHhhHHHHHHh------hhhHHHHHHHHHHHHHHHHHHHHH
Q 009584 53 AVSMVAALEAEVEQARTRIQELETERRSSK---KKLEHFLRKVSEEKAAW------RSREHEKIRAFIDDLKAEISRERK 123 (531)
Q Consensus 53 ~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k---~eie~l~KqlaEEK~aw------KskE~eki~a~i~slk~ELe~ERk 123 (531)
..|++.|+.. +-|--|+.|+++++..- .+=|+|.-.|.-|+..- ...|..|+.-+-+-|--.|+.||+
T Consensus 105 ~~s~LaAaE~---khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~ 181 (561)
T KOG1103|consen 105 AASLLAAAEK---KHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKK 181 (561)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666542 44667888888886532 23344444443332211 111222333333445556777765
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H----HhhhccHHHHHHHHHhhH
Q 009584 124 NRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDEL----------A----KEIGEDKAEVEALKRESM 189 (531)
Q Consensus 124 ~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdEL----------A----keI~edkaEVe~lKres~ 189 (531)
|-|.+..-|.-|- |.++. |--|.-.|+-+||=++-.+- | +|+ ..+|.| +
T Consensus 182 ---RHeqis~mLilEc---Kka~~---KaaEegqKA~ei~Lklekdksr~~k~eee~aaERergl-qteaqv-------e 244 (561)
T KOG1103|consen 182 ---RHEQISLMLILEC---KKALL---KAAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGL-QTEAQV-------E 244 (561)
T ss_pred ---HHHHHHHHHHHHH---HHHHH---HHHHhhhhHHHHHHhhccCccccCCChHHHHHHHhhcc-chHHHH-------H
Confidence 4455555565443 33333 33455666666665443322 1 111 123333 3
Q ss_pred HHHhhhhhhHHHHHHHHhhHHHhhhhhhhhhhhhhHHhhHHHHHHHHHHHHHHhh
Q 009584 190 KLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSS 244 (531)
Q Consensus 190 k~reE~eeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~elE~FL~s 244 (531)
|..+|++-||..|+ |+.=|+|.-|--|- +-+.-|.+...++|+-+..
T Consensus 245 k~i~EfdiEre~LR-Ael~ree~r~K~lK-------eEmeSLkeiVkdlEA~hQh 291 (561)
T KOG1103|consen 245 KLIEEFDIEREFLR-AELEREEKRQKMLK-------EEMESLKEIVKDLEADHQH 291 (561)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHH-------HHHHHHHHHHhhhhhhhhh
Confidence 45578889999887 78888887775553 3344556666677776654
No 50
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.51 E-value=88 Score=38.24 Aligned_cols=100 Identities=24% Similarity=0.342 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH-------HHHHHhhh
Q 009584 57 VAALEAEVEQARTRIQELETERRSS---KKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEI-------SRERKNRQ 126 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~---k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~EL-------e~ERk~Rk 126 (531)
+.+.+.||++.-.+++.|+.-.+-. +.+++-.+..++=-+.-...-+.-++-+.++.+.+++ ...+++-+
T Consensus 686 ~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k 765 (1174)
T KOG0933|consen 686 LRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALK 765 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666554332 2344444444443333333344445555444444433 34444444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 127 RIEIVNSKLVNELADAKVSAKRYMQDYEKE 156 (531)
Q Consensus 127 r~E~ln~KL~~ELae~Kss~~~a~kelE~E 156 (531)
..+.--..|-+-+.+++..-.+-++|+++|
T Consensus 766 ~~~~~i~~lE~~~~d~~~~re~rlkdl~ke 795 (1174)
T KOG0933|consen 766 KCEDKISTLEKKMKDAKANRERRLKDLEKE 795 (1174)
T ss_pred HHHHHHHHHHHHHhHhhhhhHhHHHHHHHH
Confidence 444444444444444444444444444443
No 51
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=86.29 E-value=72 Score=38.71 Aligned_cols=57 Identities=23% Similarity=0.363 Sum_probs=42.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 009584 97 AAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYM--QDYEKER 157 (531)
Q Consensus 97 ~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~--kelE~ER 157 (531)
..||+| |-..+-+|..||-++|+.-+.+-..-.++..||+|.--++-=+. ||+-.||
T Consensus 268 qEfkSk----im~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEER 326 (1243)
T KOG0971|consen 268 QEFKSK----IMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEER 326 (1243)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 346664 45566788999999999999999999999999999877665443 3343444
No 52
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=86.00 E-value=44 Score=34.28 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETE 77 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E 77 (531)
+..|+.++.++++++..|.++
T Consensus 83 l~~l~~~~~~l~a~~~~l~~~ 103 (423)
T TIGR01843 83 AAELESQVLRLEAEVARLRAE 103 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554443
No 53
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=85.70 E-value=75 Score=40.84 Aligned_cols=129 Identities=26% Similarity=0.383 Sum_probs=62.4
Q ss_pred HHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 89 LRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCD 168 (531)
Q Consensus 89 ~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCd 168 (531)
++.+.+|---||.+-++-+...=+.=..++ +++.+.+.+|-.||.+.+..+.-+-+++.+=+ +-+-.--|
T Consensus 1280 l~~l~~e~~~wK~R~q~L~~k~k~~d~~~~-------~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q---~~~k~qld 1349 (1822)
T KOG4674|consen 1280 LKKLEEENDRWKQRNQDLLEKYKDSDKNDY-------EKLKSEISRLKEELEEKENLIAELKKELNRLQ---EKIKKQLD 1349 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 456666777777766655444211111111 12233455555555544443333333333333 22333344
Q ss_pred HHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHhhHHHhhh-hhhhhhhhhhHHh--------------h---HH
Q 009584 169 ELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQ-MKLVDAKVAVEQK--------------Y---SQ 230 (531)
Q Consensus 169 ELAkeI~edkaEVe~lKres~k~reE~eeER~MLqmAEvWREERVQ-MKL~dAk~~leeK--------------~---s~ 230 (531)
+|-..+.+...+|..++-- --.+|..|.+.+-| |.|.+++.+.... . ++
T Consensus 1350 ~l~~e~~~lt~~~~ql~~~-------------~~rL~~~~~e~~~q~~el~~~~~~~~~~~e~t~rk~e~~~~k~~~~~e 1416 (1822)
T KOG4674|consen 1350 ELNNEKANLTKELEQLEDL-------------KTRLAAALSEKNAQELELSDKKKAHELMQEDTSRKLEKLKEKLELSEE 1416 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4555555554444444322 22347777777777 6666655433222 2 56
Q ss_pred HHHHHHHHHH
Q 009584 231 MNKLVAELEA 240 (531)
Q Consensus 231 ldkL~~elE~ 240 (531)
+..|.-+|+.
T Consensus 1417 ~~sl~eeL~e 1426 (1822)
T KOG4674|consen 1417 LESLKEELEE 1426 (1822)
T ss_pred HHHHHHHHHH
Confidence 6666666655
No 54
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=85.59 E-value=91 Score=37.53 Aligned_cols=80 Identities=15% Similarity=0.233 Sum_probs=59.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhhccHHHHHHHHHhh---HH
Q 009584 125 RQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKE-----------RELIEEVCDELAKEIGEDKAEVEALKRES---MK 190 (531)
Q Consensus 125 Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERka-----------RellE~vCdELAkeI~edkaEVe~lKres---~k 190 (531)
.+.++.-|..|++||++-.--++-.-.+|+.++++ +..++.---+|.+++.+.+.++-+-|++. .+
T Consensus 272 m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfdd 351 (1265)
T KOG0976|consen 272 MRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDD 351 (1265)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Confidence 34678889999999998777666666677777654 56777778888888888888777766663 33
Q ss_pred HHhhhhhhHHHHHH
Q 009584 191 LREEVDDERKMLQM 204 (531)
Q Consensus 191 ~reE~eeER~MLqm 204 (531)
.+.|+|+.|-|+-|
T Consensus 352 k~~eLEKkrd~al~ 365 (1265)
T KOG0976|consen 352 KLNELEKKRDMALM 365 (1265)
T ss_pred HHHHHHHHHHHHHH
Confidence 45788888888755
No 55
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.30 E-value=30 Score=38.45 Aligned_cols=97 Identities=24% Similarity=0.376 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---------------
Q 009584 110 FIDDLKAEISRER-KNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKE-RELIEEVCDELAK--------------- 172 (531)
Q Consensus 110 ~i~slk~ELe~ER-k~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERka-RellE~vCdELAk--------------- 172 (531)
-+.++.++|+.|+ |+-.++|.+--+|..+-.. +--...+|.-.++|+++ -+|||++-.+|-.
T Consensus 322 rlksl~dklaee~qr~sd~LE~lrlql~~eq~l-~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a~p~rgr 400 (502)
T KOG0982|consen 322 RLKSLADKLAEEDQRSSDLLEALRLQLICEQKL-RVRMNDILRRFQEEKEATQELIEELRKELEHLRRRKLVLANPVRGR 400 (502)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCc
Confidence 3444455555554 3444555554444443322 22222233334444443 3455555544311
Q ss_pred ---hhhccHHHHHHHHHhhHHHHhhhhhhHHH------HHHHHhh
Q 009584 173 ---EIGEDKAEVEALKRESMKLREEVDDERKM------LQMAEVW 208 (531)
Q Consensus 173 ---eI~edkaEVe~lKres~k~reE~eeER~M------LqmAEvW 208 (531)
..-+..+||..||++.-++ .|..+|+.| +|++--|
T Consensus 401 sSaRe~eleqevkrLrq~nr~l-~eqneelngtilTls~q~lkn~ 444 (502)
T KOG0982|consen 401 SSAREIELEQEVKRLRQPNRIL-SEQNEELNGTILTLSTQFLKNW 444 (502)
T ss_pred hhHHHHHHHHHHHHhccccchh-hhhhhhhhhhhhhHHHHHHHHH
Confidence 1235778999999988876 667777774 3455555
No 56
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=83.72 E-value=49 Score=34.64 Aligned_cols=46 Identities=26% Similarity=0.346 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhh
Q 009584 150 MQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEV 195 (531)
Q Consensus 150 ~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~reE~ 195 (531)
..|+-+---+|.-||.+|.||-+.....+.|...+-++-...|.|+
T Consensus 63 ~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el 108 (309)
T PF09728_consen 63 QSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKEL 108 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445678899999999999998888877766665555555444
No 57
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=83.22 E-value=49 Score=32.49 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 009584 107 IRAFIDDLKAEISRE 121 (531)
Q Consensus 107 i~a~i~slk~ELe~E 121 (531)
++..|+.++.+++..
T Consensus 75 l~~~i~~~~~~i~~~ 89 (302)
T PF10186_consen 75 LRERIERLRKRIEQK 89 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 58
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=82.55 E-value=80 Score=36.68 Aligned_cols=91 Identities=22% Similarity=0.272 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHhhHHHhh-hhhhhhhhhhhHHhh--
Q 009584 152 DYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERV-QMKLVDAKVAVEQKY-- 228 (531)
Q Consensus 152 elE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~reE~eeER~MLqmAEvWREERV-QMKL~dAk~~leeK~-- 228 (531)
.|..-+..-.-++.+|+-.-+.|...++++..|+++...+.+.+.+-..+ +.+.|..-+. |-.|.++...|-+|+
T Consensus 221 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~L~~~~~~l~~~~~e 298 (670)
T KOG0239|consen 221 NYADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTRE--VQEALKESNTLQSDLESLEENLVEKKKE 298 (670)
T ss_pred hhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566777788888888899999999998888776666443333 4577888777 456788888899999
Q ss_pred -HHHHHHHHHHHHHHhh
Q 009584 229 -SQMNKLVAELEAFLSS 244 (531)
Q Consensus 229 -s~ldkL~~elE~FL~s 244 (531)
.+--+|.++|..+...
T Consensus 299 ~~~r~kL~N~i~eLkGn 315 (670)
T KOG0239|consen 299 KEERRKLHNEILELKGN 315 (670)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 8888899999877665
No 59
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=82.38 E-value=68 Score=37.42 Aligned_cols=90 Identities=23% Similarity=0.334 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHH--------HHHHhhhhH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEIS--------RERKNRQRI 128 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe--------~ERk~Rkr~ 128 (531)
|..|+.+.++=...+.+|..++...+...+.|-. |...=...|+.+..-++.|..-+. .||+.++.+
T Consensus 567 v~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~Lae-----R~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL 641 (717)
T PF10168_consen 567 VKLLKQQKEQQLKELQELQEERKSLRESAEKLAE-----RYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKEL 641 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 3445555555555555555554444433333333 333233334444444444433332 377777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 129 EIVNSKLVNELADAKVSAKRYMQDYEK 155 (531)
Q Consensus 129 E~ln~KL~~ELae~Kss~~~a~kelE~ 155 (531)
+.++.+| -..+.++.++.+-+++
T Consensus 642 ~~~~~~l----~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 642 ERMKDQL----QDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHH
Confidence 7777765 2344555555444443
No 60
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=81.79 E-value=43 Score=30.89 Aligned_cols=40 Identities=23% Similarity=0.401 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHH
Q 009584 55 SMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSE 94 (531)
Q Consensus 55 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaE 94 (531)
|.|+.+..|+...+.++..|.+++.....+|=.|++...+
T Consensus 23 s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~ 62 (120)
T PF12325_consen 23 SQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEE 62 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888999999999999999999999998888875543
No 61
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=81.66 E-value=47 Score=33.19 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 009584 55 SMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKV 92 (531)
Q Consensus 55 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~Kql 92 (531)
.+...|..++. .-|+.+..+++..+++++.-+.+.
T Consensus 80 ~la~~L~~ev~---~~l~~~~~~~~k~rK~~~~~~~k~ 114 (239)
T cd07658 80 NLGSALTEEAI---KPLRQVLDEQHKTRKPVENEVDKA 114 (239)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555542 123333334444444444433333
No 62
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.59 E-value=35 Score=39.42 Aligned_cols=107 Identities=18% Similarity=0.218 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLV 136 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 136 (531)
+.+|+.+|++--.+|..|+++. |+|.|+|++=-++-+.-----+..-+-.+|.-++.+.-.-|.+-..-
T Consensus 334 ~~~~~~~~~~~~Tr~Er~Er~~-------D~L~rri~~~~~~~~R~~~s~A~~K~~E~K~~~~~~~~~~r~i~~~~---- 402 (852)
T KOG4787|consen 334 LELAESQVQHLNTKIERLEKTN-------DHLNKKIVELEADCKRGGVTSAHSKAGEFKLTPEMEKDMSKMIVTIS---- 402 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHhhhhcccchHHHHHHhhhhhcChHhHhHHHHHHHHHH----
Confidence 6888999999999988887643 89999999866655432222222334556667776665554433222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHH
Q 009584 137 NELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVE 182 (531)
Q Consensus 137 ~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe 182 (531)
++.+-+-++.-. +|.=+.-+..|.+|.-.-+..+-|+.
T Consensus 403 -~~~~~~~~~s~~-------~r~L~~~~~~~~~~~~~~~s~~~Ei~ 440 (852)
T KOG4787|consen 403 -ELERKNLELTTQ-------VKQLETKVTPKPNFVVPSGTTTTELR 440 (852)
T ss_pred -HHHHhcccHHHH-------HHHHhhccccchhhcCCCcchHHHHH
Confidence 222222233323 44555678899999876666555543
No 63
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=81.42 E-value=53 Score=39.21 Aligned_cols=27 Identities=15% Similarity=0.130 Sum_probs=21.5
Q ss_pred cccccccCcCCCCChHHHHHhhhhccc
Q 009584 20 MEGATKWNPVCLKTPAEVRQIYSHMKH 46 (531)
Q Consensus 20 mE~ATKWd~~~lkts~el~~v~~~~~l 46 (531)
.|+-.+|...-..|..++......|++
T Consensus 860 ke~r~e~~~~~~~~~~~id~lv~~IK~ 886 (1259)
T KOG0163|consen 860 KEGREEIISGANSTYRQIDDLVKKIKM 886 (1259)
T ss_pred hcchHHHHhhhhhHHHHHHHHHHHhcc
Confidence 357778888888888888888888873
No 64
>PRK04863 mukB cell division protein MukB; Provisional
Probab=81.17 E-value=1.7e+02 Score=37.22 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=12.0
Q ss_pred hhhhhHHHHHHHHhhhhHHH
Q 009584 503 QKNSLKAKLLEARMESQKVQ 522 (531)
Q Consensus 503 qK~SLKaKLlEARmesqKvQ 522 (531)
|...+-.++=.++-+.||.|
T Consensus 794 ~~~~~~~~~~~~~~~~~~~~ 813 (1486)
T PRK04863 794 EREELAERYATLSFDVQKLQ 813 (1486)
T ss_pred HHHHHHHHHHHHhhhHHHHH
Confidence 34444555556667777776
No 65
>PRK03918 chromosome segregation protein; Provisional
Probab=81.04 E-value=1.1e+02 Score=35.14 Aligned_cols=11 Identities=0% Similarity=0.108 Sum_probs=5.1
Q ss_pred HHHHHhhhhcc
Q 009584 35 AEVRQIYSHMK 45 (531)
Q Consensus 35 ~el~~v~~~~~ 45 (531)
.+...++.++.
T Consensus 145 ~~r~~~~~~~~ 155 (880)
T PRK03918 145 ESREKVVRQIL 155 (880)
T ss_pred HHHHHHHHHHh
Confidence 34444454443
No 66
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=80.55 E-value=0.52 Score=54.83 Aligned_cols=141 Identities=21% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHhhhhcc-cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHH-HHhhh--hHHHHHHHHHH
Q 009584 37 VRQIYSHMK-HLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEK-AAWRS--REHEKIRAFID 112 (531)
Q Consensus 37 l~~v~~~~~-leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK-~awKs--kE~eki~a~i~ 112 (531)
|.-..+..- ++|..--.+.-+..|..||..-|.++..|+..+......|..|--+|.+=- .+.+. +.--++.+-|+
T Consensus 674 leE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~ 753 (859)
T PF01576_consen 674 LEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARIR 753 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHH
Confidence 333444444 455555677888999999999999999999999999999999988887733 34443 56667788899
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHH
Q 009584 113 DLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEAL 184 (531)
Q Consensus 113 slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~l 184 (531)
.|-.+|+.|.+-+..+...++|+-+-|.|+ .-.++.+||.-.-+-+++|.|-.-|..||..+++.
T Consensus 754 eLE~~Le~E~r~~~~~~k~~rk~er~~kEl-------~~q~ee~~k~~~~~~d~~~kl~~k~k~~krq~eea 818 (859)
T PF01576_consen 754 ELEEELESEQRRRAEAQKQLRKLERRVKEL-------QFQVEEERKNAERLQDLVDKLQLKLKQLKRQLEEA 818 (859)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999999999997766554 35578899999999999999999999998887774
No 67
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=79.54 E-value=71 Score=37.00 Aligned_cols=73 Identities=26% Similarity=0.267 Sum_probs=36.2
Q ss_pred ccccccccCcCCCCChHHHHH-hhhhcc-cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHH
Q 009584 19 AMEGATKWNPVCLKTPAEVRQ-IYSHMK-HLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEK 96 (531)
Q Consensus 19 ~mE~ATKWd~~~lkts~el~~-v~~~~~-leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK 96 (531)
++=+|.=|.|.--=+..|-.. ....-| ..+-|.- -+|..|+++= ++++.++.++=+++.+.=
T Consensus 309 asf~A~ly~P~~dLsveEK~~~~r~~~~~~~ddH~R-DALAAA~kAY---------------~~yk~kl~~vEr~~~~~g 372 (652)
T COG2433 309 ASFNAVLYTPDRDLSVEEKQEALRTLKISVSDDHER-DALAAAYKAY---------------LAYKPKLEKVERKLPELG 372 (652)
T ss_pred HHcCCcccCCcccCCHHHHHHHHhhcCCCCCCchHH-HHHHHHHHHH---------------HHHHHHHHHHHHhccccc
Confidence 444677777766444444333 223333 4555542 2445555442 235566666666666553
Q ss_pred HHhhhhHHHHHHHH
Q 009584 97 AAWRSREHEKIRAF 110 (531)
Q Consensus 97 ~awKskE~eki~a~ 110 (531)
. |+- .++|++-
T Consensus 373 ~-~~d--~~rika~ 383 (652)
T COG2433 373 I-WKD--VERIKAL 383 (652)
T ss_pred c-hhh--HHHHHHH
Confidence 3 433 3444443
No 68
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=79.30 E-value=91 Score=33.07 Aligned_cols=44 Identities=32% Similarity=0.357 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhh
Q 009584 152 DYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEV 195 (531)
Q Consensus 152 elE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~reE~ 195 (531)
+....+....-+-+=-.+||.++.+|..++-.+-++.+.+|.+.
T Consensus 166 ei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkea 209 (294)
T COG1340 166 EIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEA 209 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333443333334445677777777777766666666555544
No 69
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=79.19 E-value=22 Score=29.81 Aligned_cols=61 Identities=15% Similarity=0.278 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 009584 55 SMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISR 120 (531)
Q Consensus 55 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ 120 (531)
+.|.+|+.-|++|-.++.-...+......+=|.+++++.+ ..-+-.++++-+..++.||+.
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~-----a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGD-----AYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999998888888888888888888876 344667777777777777654
No 70
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=78.00 E-value=73 Score=31.27 Aligned_cols=40 Identities=23% Similarity=0.347 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHH
Q 009584 164 EEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQ 203 (531)
Q Consensus 164 E~vCdELAkeI~edkaEVe~lKres~k~reE~eeER~MLq 203 (531)
+.=+..|-..|...+.+++..+.+..+.+..++.-+..|.
T Consensus 69 ~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 69 RERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555555555555555666666665
No 71
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=77.79 E-value=36 Score=38.31 Aligned_cols=53 Identities=19% Similarity=0.198 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 114 LKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEV 166 (531)
Q Consensus 114 lk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~v 166 (531)
|.+|-..|+-.-++.+.+-.|++++|.++..-++...+..+.|-+.-++||..
T Consensus 96 LE~e~k~d~v~~khn~~I~~k~g~~L~~v~~~~~~~~~~~~~e~~q~~~LekA 148 (508)
T PF00901_consen 96 LEDEQKEDEVREKHNKKIIEKFGNDLEKVYKFMKGQEKVEEEEENQIEILEKA 148 (508)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHH
Confidence 33344444444445555555666666666665555555555555555544443
No 72
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=77.66 E-value=1.6e+02 Score=34.99 Aligned_cols=55 Identities=11% Similarity=0.189 Sum_probs=31.1
Q ss_pred HHHHhhhhcc-cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 009584 36 EVRQIYSHMK-HLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLR 90 (531)
Q Consensus 36 el~~v~~~~~-leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~K 90 (531)
|++....++- +.+++...=.-|..|+..|-.++.+..-|..+-.+.+.+++.-..
T Consensus 302 E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~ 357 (775)
T PF10174_consen 302 ELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNS 357 (775)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4555555555 555554444556666666666666666666665555555544433
No 73
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=77.59 E-value=1.3e+02 Score=33.82 Aligned_cols=50 Identities=30% Similarity=0.356 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 105 EKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYE 154 (531)
Q Consensus 105 eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE 154 (531)
+.|...|+.|-+-|+.|-.+++.++....++..-|..++.....+..+++
T Consensus 285 ~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~ 334 (569)
T PRK04778 285 EEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEID 334 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555544444444444444444444444333
No 74
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=77.16 E-value=26 Score=30.53 Aligned_cols=84 Identities=25% Similarity=0.307 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHhhHHHhhhhhhhhhhhhhHHhhHHHHHHHHHHHHHHh
Q 009584 164 EEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLS 243 (531)
Q Consensus 164 E~vCdELAkeI~edkaEVe~lKres~k~reE~eeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~elE~FL~ 243 (531)
-.++..|.|+..-|+.|+..-.....++..+-. |=-++...+.- |.+++.-|.+=..-|.....+|+.||.
T Consensus 6 t~~vkRL~KE~~~Y~kE~~~q~~rle~~k~~~~-de~~iKkq~~v--------l~Et~~mipd~~~RL~~a~~~L~~~l~ 76 (90)
T PF02970_consen 6 TGVVKRLLKEEASYEKEVEEQEARLEKMKAEGE-DEYDIKKQEEV--------LEETKMMIPDCQQRLEKAVEDLEEFLE 76 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-SHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHH--------HHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 357778888888899998888888888876643 33333333322 444555566666677788889999998
Q ss_pred hcCCCCchhHHHH
Q 009584 244 SRSINPDIQEMKE 256 (531)
Q Consensus 244 sk~~~~d~~~~r~ 256 (531)
+.....+....++
T Consensus 77 ~~~~~ee~~~ake 89 (90)
T PF02970_consen 77 EEEGLEELEEAKE 89 (90)
T ss_dssp HHHCCCCSHHHHH
T ss_pred HCcCchhHHHHhh
Confidence 8544445444443
No 75
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=75.63 E-value=2.1e+02 Score=35.30 Aligned_cols=13 Identities=23% Similarity=0.304 Sum_probs=7.4
Q ss_pred hHHHHhhcC--CCCC
Q 009584 419 SIARLWRSG--PNNG 431 (531)
Q Consensus 419 siskLwrS~--~~n~ 431 (531)
-..++-.|. |.|-
T Consensus 607 Ea~~~m~s~~~p~n~ 621 (1074)
T KOG0250|consen 607 EAREFMQSDKPPANV 621 (1074)
T ss_pred HHHHHHhcCCCCccc
Confidence 344677777 5444
No 76
>PRK03918 chromosome segregation protein; Provisional
Probab=75.62 E-value=1.6e+02 Score=33.93 Aligned_cols=17 Identities=18% Similarity=0.450 Sum_probs=6.7
Q ss_pred HHHHhhhccHHHHHHHH
Q 009584 169 ELAKEIGEDKAEVEALK 185 (531)
Q Consensus 169 ELAkeI~edkaEVe~lK 185 (531)
+|-+.+..++++++.+.
T Consensus 311 ~l~~~~~~l~~~~~~l~ 327 (880)
T PRK03918 311 EIEKRLSRLEEEINGIE 327 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344444444433
No 77
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=75.49 E-value=52 Score=29.93 Aligned_cols=33 Identities=18% Similarity=0.098 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 009584 55 SMVAALEAEVEQARTRIQELETERRSSKKKLEH 87 (531)
Q Consensus 55 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~ 87 (531)
.+.-.+..+|..+...+.++..=..+++.++++
T Consensus 46 ~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~ 78 (139)
T PF05615_consen 46 FLYERLLKELAQFEFSILKSQLILEMNKREREN 78 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666665555555555433
No 78
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=75.11 E-value=9.1 Score=34.28 Aligned_cols=70 Identities=27% Similarity=0.405 Sum_probs=56.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Q 009584 116 AEISRERKNRQRIEIVNSKLVNELADAKVSA-KRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALK 185 (531)
Q Consensus 116 ~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~-~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lK 185 (531)
.+|..|+..|..+|....++-.||-+.-.++ ..|=+=.-.+|+.|..+|.=-+.|-+.+.+-+..++.|.
T Consensus 1 ~~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq 71 (100)
T PF06428_consen 1 KELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQ 71 (100)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999987766 666666788899999998888888888777655555433
No 79
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=75.04 E-value=47 Score=38.84 Aligned_cols=58 Identities=24% Similarity=0.354 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 009584 61 EAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEI 118 (531)
Q Consensus 61 k~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~EL 118 (531)
+.++++.+..+..+.+|-...+.+++...++|.+++..+..+.++++..+|+.++.++
T Consensus 524 ~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~ 581 (771)
T TIGR01069 524 EKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEV 581 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444455555555555555555555555555555555444433
No 80
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=74.82 E-value=56 Score=38.29 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 127 RIEIVNSKLVNELADAKVSAKRYMQDYEK 155 (531)
Q Consensus 127 r~E~ln~KL~~ELae~Kss~~~a~kelE~ 155 (531)
..+.+.++.-..|.++|..+.+.++++.+
T Consensus 567 ~~~~~~~~a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 567 LLEEAEKEAQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666666666666654
No 81
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=74.35 E-value=41 Score=36.85 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH--------HhhhhHHHHHHHHHHHHHHHHHHHH
Q 009584 56 MVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKA--------AWRSREHEKIRAFIDDLKAEISRER 122 (531)
Q Consensus 56 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~--------awKskE~eki~a~i~slk~ELe~ER 122 (531)
-|.+|+.+|..++..+..+..+.......+ .|+..+.. .. .|....-..+.+.++.+.+++..-+
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALA-KFLEDIRE-GLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLL 144 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhh-hhccccccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 478888888888888888888887777766 34444443 11 1112233456666666666664433
No 82
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.06 E-value=77 Score=35.38 Aligned_cols=128 Identities=20% Similarity=0.266 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---hhh-HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETER---RSS-KKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVN 132 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~---~s~-k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln 132 (531)
+.-|+++|+-|++.+.-..+=- ... ...|+-..++-.+|-++-+.-..+-+...=-.+-.-|+.||..-+. --
T Consensus 40 l~~lrtql~~a~aeme~ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa~~k~~~~~ye~q~~~~leqertq~qq---~~ 116 (542)
T KOG0993|consen 40 LGHLRTQLWEAQAEMENIKAIATVSEPTKSEAVSAVVRQEEEEVASLQASQKSPNPTYECQMCQNLEQERTQLQQ---NE 116 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhccccchhHHHhcCCCccHHHHHHHHHHHHHHHHHH---HH
Confidence 5678888888888765544322 111 2356677777777777666655555555544555567777765444 34
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHH
Q 009584 133 SKLVNELADAKVSAKR--YMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMK 190 (531)
Q Consensus 133 ~KL~~ELae~Kss~~~--a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k 190 (531)
.++-+|+..++--+++ +.-+||+|++-+.=.++--.|+.. -.+.||.+||.+..+
T Consensus 117 e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~---pmekeI~elk~kl~~ 173 (542)
T KOG0993|consen 117 EKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVT---PMEKEINELKKKLAK 173 (542)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHh---hHHHHHHHHHHHHHh
Confidence 6888999999988888 888999998765544444444433 345566666655444
No 83
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=73.98 E-value=1.5e+02 Score=32.89 Aligned_cols=42 Identities=14% Similarity=0.306 Sum_probs=19.1
Q ss_pred HHHHHhhhhcc--cccccc---hhhhHHHHHHHHHHHHHHHHHHHHH
Q 009584 35 AEVRQIYSHMK--HLDQQV---SAVSMVAALEAEVEQARTRIQELET 76 (531)
Q Consensus 35 ~el~~v~~~~~--leeq~~---s~~Slv~aLk~EL~~Ar~rI~eL~~ 76 (531)
.++..+++.+. +.+... ..-++|...+..+++...++.+|..
T Consensus 226 ~el~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~ 272 (582)
T PF09731_consen 226 QELVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKELAELKE 272 (582)
T ss_pred HHHHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666664 333332 1224444444444444444444433
No 84
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=73.70 E-value=1.7e+02 Score=33.28 Aligned_cols=65 Identities=17% Similarity=0.124 Sum_probs=30.5
Q ss_pred hhHHHHhhcCCCCCCCceeeeccCCCCcccccCccccC-CccccccCCCCCCCCCCCCCCCCCC--CCCCCccccc
Q 009584 418 SSIARLWRSGPNNGDNYKIITVDGTKGRLSVSNGRLSN-GSLASLDRGSGNGGLSPSDLGQWSS--PDSGNPHVTR 490 (531)
Q Consensus 418 ssiskLwrS~~~n~~~~k~~~~e~~ngRl~~sn~r~sn-~~~~sp~~gs~e~g~s~~~~~qwSS--Pds~Nphv~R 490 (531)
+-+..|++.+ |..+-++ .|..-|+| -..+..+ ...+-|..+.+=.-|++. .+|.. ++-+.|+|.+
T Consensus 563 a~~~al~~~~---~~~~p~i-iD~p~~~l--D~~~r~~l~~~~~~~~~~QvIils~d--~e~~~~~~~~l~~~i~~ 630 (650)
T TIGR03185 563 ALLWGLAKVS---GRRLPVI-IDTPLGRL--DSSHRENLVVNYFPKASHQVLLLSTD--EEVDEKHYNLLKPNISH 630 (650)
T ss_pred HHHHHHHHhc---CCCCCEE-EcCCcccc--ChHHHHHHHHHHhhccCCeEEEEech--HhhCHHHHHHHHHHhhh
Confidence 4444566654 2234444 47777787 4333333 222556544444445543 34432 3445555543
No 85
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=73.66 E-value=94 Score=30.42 Aligned_cols=93 Identities=28% Similarity=0.383 Sum_probs=68.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhh----------------HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 009584 53 AVSMVAALEAEVEQARTRIQELETERRSS----------------KKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKA 116 (531)
Q Consensus 53 ~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~----------------k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ 116 (531)
...||..|++.+.+-|.++.+|++--.+. -.+|+.++.+|.||+. ++.+-.-+- .-+++
T Consensus 14 qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqq--R~~~L~qvN---~lLRe 88 (182)
T PF15035_consen 14 QAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQ--RSEELAQVN---ALLRE 88 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHH--hHHHHHHHH---HHHHH
Confidence 44679999999999999999998866222 2578889999999976 554444444 34566
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 117 EISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKER 157 (531)
Q Consensus 117 ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ER 157 (531)
.|+..+ ..|..|..+|..+...+..+..+|+...
T Consensus 89 QLEq~~-------~~N~~L~~dl~klt~~~~~l~~eL~~ke 122 (182)
T PF15035_consen 89 QLEQAR-------KANEALQEDLQKLTQDWERLRDELEQKE 122 (182)
T ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 676554 4688888888888877777777776544
No 86
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=73.65 E-value=1.6e+02 Score=33.06 Aligned_cols=48 Identities=10% Similarity=0.279 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHhhHHHHHHhhhh
Q 009584 55 SMVAALEAEVEQARTRIQELET-----ERRSSKKKLEHFLRKVSEEKAAWRSR 102 (531)
Q Consensus 55 Slv~aLk~EL~~Ar~rI~eL~~-----E~~s~k~eie~l~KqlaEEK~awKsk 102 (531)
+-|..|+..|..+...|..|.= .-......||.|-..|.-|..|.+.=
T Consensus 256 ~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~v 308 (569)
T PRK04778 256 KEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYV 308 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777776666655543 33555678888988888888777653
No 87
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=72.94 E-value=88 Score=29.75 Aligned_cols=55 Identities=18% Similarity=0.320 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHh-hhhHHHHHHHH
Q 009584 81 SKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEI-SRERKN-RQRIEIVNSKL 135 (531)
Q Consensus 81 ~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~EL-e~ERk~-Rkr~E~ln~KL 135 (531)
.+-+|.+|+|.|.+-+--+-.+--..+...+..+++.+ ..-..+ -.++..++.+|
T Consensus 19 IqgEI~~FvkEFE~KRgdRE~~~L~~~~~~~~e~~e~~lp~~~~~~~~~L~~l~~~l 75 (145)
T PF14942_consen 19 IQGEIRYFVKEFEEKRGDREVRVLENLTEMISETNEHILPRCIELMQQNLEQLLERL 75 (145)
T ss_pred HHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34578889998888777777777778888888887655 444444 33666666665
No 88
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=72.91 E-value=1.9e+02 Score=33.47 Aligned_cols=91 Identities=23% Similarity=0.346 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---HH
Q 009584 58 AALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVN---SK 134 (531)
Q Consensus 58 ~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln---~K 134 (531)
++|+.-+..+++-+.++..-.+..-+. |.++.+|-. .|--|.++|+..++.|+.-++--+=.=...|.+| -+
T Consensus 269 ~~L~~D~nK~~~y~~~~~~k~~~~~~~----l~~l~~Eie-~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~ 343 (581)
T KOG0995|consen 269 ARLQDDVNKFQAYVSQMKSKKQHMEKK----LEMLKSEIE-EKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNK 343 (581)
T ss_pred HHHHhHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 345556666666666666544444433 444444422 3455778888888888887765544444445444 47
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009584 135 LVNELADAKVSAKRYMQDY 153 (531)
Q Consensus 135 L~~ELae~Kss~~~a~kel 153 (531)
|-++|.++++.+....|++
T Consensus 344 l~r~l~~i~~~~d~l~k~v 362 (581)
T KOG0995|consen 344 LKRELNKIQSELDRLSKEV 362 (581)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888777766654
No 89
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=72.83 E-value=1.6e+02 Score=32.70 Aligned_cols=36 Identities=22% Similarity=0.305 Sum_probs=20.5
Q ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 009584 86 EHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRE 121 (531)
Q Consensus 86 e~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~E 121 (531)
+.|-.++.+...+-+...-.-+.+.+..++.-|+.|
T Consensus 158 ~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e 193 (511)
T PF09787_consen 158 RSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKE 193 (511)
T ss_pred hhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 555555555555555555555666666665555554
No 90
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=72.54 E-value=45 Score=30.79 Aligned_cols=83 Identities=17% Similarity=0.268 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHh-----hHHHhhhhhhhhhhhhhHHhhHHHHH
Q 009584 159 ERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEV-----WREERVQMKLVDAKVAVEQKYSQMNK 233 (531)
Q Consensus 159 aRellE~vCdELAkeI~edkaEVe~lKres~k~reE~eeER~MLqmAEv-----WREERVQMKL~dAk~~leeK~s~ldk 233 (531)
...-|.+.|++|...|++...=|..+-.-....-..+|.|+. --|+-. =-++|- -+.......+.||...|++
T Consensus 21 ~t~~Lk~ec~~F~~ki~~F~~iv~~~~~~~~~~A~~VE~eKl-kAIG~RN~l~s~~k~R~-~~~q~lq~~I~Ek~~eLER 98 (120)
T PF14931_consen 21 QTQELKEECKEFVEKISEFQKIVKGFIEILDELAKRVENEKL-KAIGARNLLKSEAKQRE-AQQQQLQALIAEKKMELER 98 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHH
Confidence 344567788899888888888888777666666566665542 222210 012221 2233455678999999999
Q ss_pred HHHHHHHHHh
Q 009584 234 LVAELEAFLS 243 (531)
Q Consensus 234 L~~elE~FL~ 243 (531)
|+.|.++..+
T Consensus 99 l~~E~~sL~k 108 (120)
T PF14931_consen 99 LRSEYESLQK 108 (120)
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 91
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=72.06 E-value=38 Score=39.09 Aligned_cols=14 Identities=57% Similarity=0.755 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHH
Q 009584 151 QDYEKERKERELIE 164 (531)
Q Consensus 151 kelE~ERkaRellE 164 (531)
|-||+||-.|+.||
T Consensus 663 QrLERErmErERLE 676 (940)
T KOG4661|consen 663 QRLERERMERERLE 676 (940)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666665554
No 92
>PRK11637 AmiB activator; Provisional
Probab=71.98 E-value=1.5e+02 Score=31.88 Aligned_cols=32 Identities=13% Similarity=0.193 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 009584 59 ALEAEVEQARTRIQELETERRSSKKKLEHFLR 90 (531)
Q Consensus 59 aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~K 90 (531)
.++.+|+..+.+|+++.++....++++..+.+
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~ 75 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLA 75 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555554444443333333
No 93
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=71.96 E-value=73 Score=28.39 Aligned_cols=41 Identities=24% Similarity=0.286 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 009584 102 REHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADA 142 (531)
Q Consensus 102 kE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~ 142 (531)
....++..++.++.++|.+-++.|.++-..|+.|+.|+-+.
T Consensus 3 ~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l 43 (106)
T PF05837_consen 3 LEILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLEL 43 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788899999999999999999999999999998653
No 94
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=71.68 E-value=1.5e+02 Score=32.01 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009584 144 VSAKRYMQDYEKERKERELIEEVCDELAKEIGED 177 (531)
Q Consensus 144 ss~~~a~kelE~ERkaRellE~vCdELAkeI~ed 177 (531)
.+...++.|+++.|..+..|+.+-..++.++...
T Consensus 346 ~aY~~LL~Ev~RRr~~~~k~~~i~~~~~eeL~~l 379 (412)
T PF04108_consen 346 SAYDSLLLEVERRRAVRDKMKKIIREANEELDKL 379 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777787777777777777777776543
No 95
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=71.43 E-value=2.8e+02 Score=34.97 Aligned_cols=41 Identities=22% Similarity=0.313 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHH
Q 009584 151 QDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKL 191 (531)
Q Consensus 151 kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~ 191 (531)
+.|++=+......|....-.++.|++...-|++||++.++.
T Consensus 1598 ~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qn 1638 (1758)
T KOG0994|consen 1598 QLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQN 1638 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444455555555677888888888888876654
No 96
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=71.12 E-value=1.2e+02 Score=30.50 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 134 KLVNELADAKVSAKRYMQDYEKERKE 159 (531)
Q Consensus 134 KL~~ELae~Kss~~~a~kelE~ERka 159 (531)
-+..+|..+..||+...+-||+=|..
T Consensus 80 q~~~dL~s~E~sfsdl~~ryek~K~v 105 (207)
T PF05010_consen 80 QAYADLNSLEKSFSDLHKRYEKQKEV 105 (207)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 37788999999999999999876544
No 97
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=70.77 E-value=85 Score=28.64 Aligned_cols=69 Identities=14% Similarity=0.245 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH--HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVS--EEKAAWRSREHEKIRAFIDDLKAEISRERKNR 125 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~Kqla--EEK~awKskE~eki~a~i~slk~ELe~ERk~R 125 (531)
+..|+.|+..++..+..+.......+.+++...+... .++...----|-..-..|..+|.++..-+...
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~ 75 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEI 75 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888777777777666554332 22222222223333344566666665544333
No 98
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=70.34 E-value=1e+02 Score=29.35 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRK 91 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~Kq 91 (531)
++.-+.+-+.-..||--|+++-.....+..++.+.
T Consensus 12 LK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~d 46 (140)
T PF10473_consen 12 LKESESEKDSLEDHVESLERELEMSQENKECLILD 46 (140)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45555555566666666666666666666665553
No 99
>PRK14154 heat shock protein GrpE; Provisional
Probab=70.20 E-value=99 Score=31.17 Aligned_cols=67 Identities=10% Similarity=0.169 Sum_probs=45.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 009584 51 VSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAE 117 (531)
Q Consensus 51 ~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~E 117 (531)
-+..+.+..|..+|...+.++.+|...-.....+++.+.|+...|+..-+..-.+++-..|-.+.+.
T Consensus 48 ~~~~~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDn 114 (208)
T PRK14154 48 GLEFPSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADS 114 (208)
T ss_pred cccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 4566778999999999999999998777777788888888777766544444433333333333333
No 100
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=70.11 E-value=2.6e+02 Score=34.01 Aligned_cols=45 Identities=20% Similarity=0.205 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009584 132 NSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGE 176 (531)
Q Consensus 132 n~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~e 176 (531)
...|..+=+++..-+....|.+|..+.+-.=++++--+|+..|.+
T Consensus 433 ~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~ 477 (980)
T KOG0980|consen 433 YTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEE 477 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344455555555666666677777777666555555555555543
No 101
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=70.00 E-value=1.5e+02 Score=31.34 Aligned_cols=111 Identities=21% Similarity=0.279 Sum_probs=66.2
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 009584 46 HLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNR 125 (531)
Q Consensus 46 leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~R 125 (531)
|.|-|.++--+=+-|.++|+++..|-+.|+.+.+..+.+++.+-.++..-.... -..+..|.++|..=+.
T Consensus 36 l~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~--------y~q~s~Leddlsqt~a-- 105 (333)
T KOG1853|consen 36 LNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQF--------YQQESQLEDDLSQTHA-- 105 (333)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH--
Confidence 445566666667889999999999999999999999988887766554433321 1112233344433222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhh
Q 009584 126 QRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERE-LIEEVCDELAKEIG 175 (531)
Q Consensus 126 kr~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRe-llE~vCdELAkeI~ 175 (531)
.-|.+ +|-.+||. ++-.+||+-+++.. .+|++-..|-..|.
T Consensus 106 -ikeql-~kyiReLE-------QaNDdLErakRati~sleDfeqrLnqAIE 147 (333)
T KOG1853|consen 106 -IKEQL-RKYIRELE-------QANDDLERAKRATIYSLEDFEQRLNQAIE 147 (333)
T ss_pred -HHHHH-HHHHHHHH-------HhccHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 12222 33445553 33456666666554 45666666665553
No 102
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=69.85 E-value=2.2e+02 Score=33.14 Aligned_cols=152 Identities=15% Similarity=0.200 Sum_probs=68.7
Q ss_pred CCCccccccccccCcCCCCChHHHHHhhhhcc-cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 009584 14 QFSNPAMEGATKWNPVCLKTPAEVRQIYSHMK-HLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKV 92 (531)
Q Consensus 14 ~~~~~~mE~ATKWd~~~lkts~el~~v~~~~~-leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~Kql 92 (531)
|-|.+....|--|+..--+-+.|.-....+.| ++. .++..+.++..+....-++.++++...-...++--+...-
T Consensus 100 PDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~----el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~ 175 (629)
T KOG0963|consen 100 PDPVPLLASAAELLNKQQKASEENEELKEELEEVNN----ELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEK 175 (629)
T ss_pred CCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH----HHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666555444555555555554 222 2344566666666666666665554433333222222111
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Q 009584 93 SEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVS-----------AKRYMQDYEKERKERE 161 (531)
Q Consensus 93 aEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss-----------~~~a~kelE~ERkaRe 161 (531)
.+. .|..++ ....+.-+.+++.++.=-+.-.-+.+.+..-.++|.+.++. +.-+|.+||.-...=.
T Consensus 176 ~~q--~~~e~e-~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~ 252 (629)
T KOG0963|consen 176 LEQ--EWAERE-AGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIV 252 (629)
T ss_pred HHH--HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 122222 11223333333333332233334444455555555555544 3344556655555444
Q ss_pred HHHHHHHHHHH
Q 009584 162 LIEEVCDELAK 172 (531)
Q Consensus 162 llE~vCdELAk 172 (531)
-+|.-|..|-.
T Consensus 253 ~lE~e~e~L~~ 263 (629)
T KOG0963|consen 253 FLEREVEQLRE 263 (629)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 103
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=69.44 E-value=2.9e+02 Score=34.20 Aligned_cols=104 Identities=18% Similarity=0.280 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHhh------
Q 009584 135 LVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVW------ 208 (531)
Q Consensus 135 L~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~reE~eeER~MLqmAEvW------ 208 (531)
..+....++.-++..-.+++..++.|.....+-.++-..|.+-+.|+..++-+-..+.+| +.|.-.+|+..=
T Consensus 298 ~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~e--e~~~~~rl~~l~~~~~~l 375 (1200)
T KOG0964|consen 298 ISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDE--EKRLKKRLAKLEQKQRDL 375 (1200)
T ss_pred HHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhH--HHHHHHHHHHHHHHHHHH
Confidence 333344444456667778888899999999999999999999999999988877766444 344455555432
Q ss_pred ---------------HHHhhhhhhhhhhhhhHHhhHHHHHHHHHHHH
Q 009584 209 ---------------REERVQMKLVDAKVAVEQKYSQMNKLVAELEA 240 (531)
Q Consensus 209 ---------------REERVQMKL~dAk~~leeK~s~ldkL~~elE~ 240 (531)
||.=+.-.+.+-+-.+.++.-.-+.|+.||++
T Consensus 376 ~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~ 422 (1200)
T KOG0964|consen 376 LAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIED 422 (1200)
T ss_pred HHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 33335555555555565555555555555443
No 104
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=68.49 E-value=38 Score=38.18 Aligned_cols=58 Identities=21% Similarity=0.336 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 009584 58 AALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSK 134 (531)
Q Consensus 58 ~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~K 134 (531)
.-|+.-+|.||++-++...|+...+.+ |-+|+ ..-+++-..|-+|||+|..++.-++|
T Consensus 510 ~llkva~dnar~qekQiq~Ek~ELkmd-------~lrer------------elreslekql~~ErklR~~~qkr~kk 567 (641)
T KOG3915|consen 510 GLLKVAIDNARAQEKQIQLEKTELKMD-------FLRER------------ELRESLEKQLAMERKLRAIVQKRLKK 567 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888877777665544421 22222 22344556777888888776655554
No 105
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=67.42 E-value=1.9e+02 Score=31.31 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009584 55 SMVAALEAEVEQARTRIQELETERRS 80 (531)
Q Consensus 55 Slv~aLk~EL~~Ar~rI~eL~~E~~s 80 (531)
+-+..|+..|..+++++..|.++..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 97 NQKQLLEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777654
No 106
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=67.28 E-value=1.1e+02 Score=28.73 Aligned_cols=14 Identities=21% Similarity=0.522 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 009584 63 EVEQARTRIQELET 76 (531)
Q Consensus 63 EL~~Ar~rI~eL~~ 76 (531)
|+.-++.++.+|.+
T Consensus 82 e~~~~~~~l~~l~~ 95 (191)
T PF04156_consen 82 ELSELQQQLQQLQE 95 (191)
T ss_pred hHHhHHHHHHHHHH
Confidence 44444444444443
No 107
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=67.11 E-value=1e+02 Score=28.16 Aligned_cols=131 Identities=18% Similarity=0.234 Sum_probs=70.9
Q ss_pred CChHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Q 009584 32 KTPAEVRQIYSHMKHLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFI 111 (531)
Q Consensus 32 kts~el~~v~~~~~leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i 111 (531)
.+..+|..+++..-..+.-+..++-|..+..+++...+...+|...--+.+.+++.+..++.+-.. +...+....
T Consensus 4 lS~~eL~~Ll~d~~~l~~~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~-----~~~~L~~~~ 78 (150)
T PF07200_consen 4 LSTEELQELLSDEEKLDAFVKSLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYE-----ELKELESEY 78 (150)
T ss_dssp -TTHHHHHHHHH-HHHHHHGGGGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred CCHHHHHHHHcCHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 455677777777654455667777799999999999999999988777777777777776663322 112222222
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhH
Q 009584 112 DDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESM 189 (531)
Q Consensus 112 ~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~ 189 (531)
+.+.. +...+..+..-.- ++.-+. .+-.-.|+.|++||...-+.+-.|..+-++-.
T Consensus 79 ~~k~~----------~~~~l~~~~s~~~--l~~~L~----------~~~~e~eeeSe~lae~fl~g~~d~~~Fl~~f~ 134 (150)
T PF07200_consen 79 QEKEQ----------QQDELSSNYSPDA--LLARLQ----------AAASEAEEESEELAEEFLDGEIDVDDFLKQFK 134 (150)
T ss_dssp HHHHH----------HHHHHHHCHHHHH--HHHHHH----------HHHHHHHHHHHHHC-S-SSSHHHHHHHHHHHH
T ss_pred HHHHH----------HHHHHHccCCHHH--HHHHHH----------HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 21111 2222232222221 111122 23333567899999998888888888765433
No 108
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=67.02 E-value=1.2e+02 Score=28.89 Aligned_cols=88 Identities=24% Similarity=0.358 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKL- 135 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL- 135 (531)
|-+|..||+.++..--.++.+--..+.+|..|--++ +.+..-+..+..||..=|.-+.-+...=.+.
T Consensus 26 v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el------------~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q 93 (140)
T PF10473_consen 26 VESLERELEMSQENKECLILDAENSKAEIETLEEEL------------EELTSELNQLELELDTLRSEKENLDKELQKKQ 93 (140)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888898888888888888888888888776544 3344444445555554443333333333333
Q ss_pred --HHHHHHHHHHHHHHHHHHHHH
Q 009584 136 --VNELADAKVSAKRYMQDYEKE 156 (531)
Q Consensus 136 --~~ELae~Kss~~~a~kelE~E 156 (531)
+.||.-..+++.+.+++.|.+
T Consensus 94 ~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 94 EKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 455555566666666666665
No 109
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=66.85 E-value=2.2e+02 Score=33.52 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=14.3
Q ss_pred hHHHHHHHHHhhHHHHHHhh
Q 009584 81 SKKKLEHFLRKVSEEKAAWR 100 (531)
Q Consensus 81 ~k~eie~l~KqlaEEK~awK 100 (531)
...+++.|+..|.+++....
T Consensus 514 ~~~~~~~li~~l~~~~~~~e 533 (782)
T PRK00409 514 DKEKLNELIASLEELERELE 533 (782)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 44578888888888776543
No 110
>PRK10884 SH3 domain-containing protein; Provisional
Probab=66.37 E-value=1.2e+02 Score=30.19 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 009584 53 AVSMVAALEAEVEQARTRIQELETE 77 (531)
Q Consensus 53 ~~Slv~aLk~EL~~Ar~rI~eL~~E 77 (531)
....+.+|+.||..++++..++.++
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455677777777777666665544
No 111
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=66.30 E-value=1.8e+02 Score=30.84 Aligned_cols=85 Identities=21% Similarity=0.323 Sum_probs=44.2
Q ss_pred HhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 78 RRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKER 157 (531)
Q Consensus 78 ~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ER 157 (531)
+.....++.+++++|.+.|..- .++-+-.| +.++|.|+.=-+.|+. +-+++|++++
T Consensus 18 r~~~~~e~~~l~~~f~elkeq~-------yk~kLa~L----------q~~Leel~~g~~~eYl-------~~~~~L~~~~ 73 (291)
T KOG4466|consen 18 RANEESEMSNLEKQFSELKEQM-------YKDKLAQL----------QAQLEELGQGTAPEYL-------KRVKKLDESR 73 (291)
T ss_pred hhhhhhhhhhhhhhhhHHHHHH-------HHHHHHHH----------HHHHHHHhccccHHHH-------HHHHHHHHHH
Confidence 3344567889999999887622 22222222 3344445444444443 2355666666
Q ss_pred HHHHHHHHHHHHHHHhh--hccHHHHHHHHH
Q 009584 158 KERELIEEVCDELAKEI--GEDKAEVEALKR 186 (531)
Q Consensus 158 kaRellE~vCdELAkeI--~edkaEVe~lKr 186 (531)
+.|-.+-.+-.+|..+. .+|+-|+.+-|.
T Consensus 74 kerl~~aely~e~~~e~v~~eYe~E~~aAk~ 104 (291)
T KOG4466|consen 74 KERLRVAELYREYCVERVEREYECEIKAAKK 104 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655555544444443 245555555443
No 112
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=66.24 E-value=1.5e+02 Score=29.93 Aligned_cols=73 Identities=19% Similarity=0.271 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLV 136 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 136 (531)
|.-++.+|..|+..+-+++..++....+++.+.. ....|.+ +.+.=+..-|-.||
T Consensus 33 ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~----~~~k~e~---------------------~A~~Al~~g~E~LA 87 (225)
T COG1842 33 IRDMESELAKARQALAQAIARQKQLERKLEEAQA----RAEKLEE---------------------KAELALQAGNEDLA 87 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH---------------------HHHHHHHCCCHHHH
Confidence 6677788888888888888877777776554433 3333332 33333334457788
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009584 137 NELADAKVSAKRYMQDYE 154 (531)
Q Consensus 137 ~ELae~Kss~~~a~kelE 154 (531)
+++.+.+.++-+.++-++
T Consensus 88 r~al~~~~~le~~~~~~~ 105 (225)
T COG1842 88 REALEEKQSLEDLAKALE 105 (225)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888776665555544443
No 113
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=66.14 E-value=2.3e+02 Score=33.96 Aligned_cols=123 Identities=24% Similarity=0.361 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 104 HEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVN---------------ELADAKVSAKRYMQDYEKERKERELIEEVCD 168 (531)
Q Consensus 104 ~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~---------------ELae~Kss~~~a~kelE~ERkaRellE~vCd 168 (531)
+--|.=|+|.|+.|-. .+|||+-.||..|-. ||.-.++--.-.-+.|..-.|.-++|-..-+
T Consensus 382 q~EIALA~QplrsENa---qLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kne 458 (861)
T PF15254_consen 382 QVEIALAMQPLRSENA---QLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNE 458 (861)
T ss_pred hhhhHhhhhhhhhhhH---HHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Confidence 3456677888888765 588999999999943 2333332222222345555678888888888
Q ss_pred HHHHhhhccHHHHHHHHHhhHHHHhhh-hhhHHHHHHHHhhHHHhhhhhhhhhhhhhHHhhHHHHHHHHHHHHH
Q 009584 169 ELAKEIGEDKAEVEALKRESMKLREEV-DDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAF 241 (531)
Q Consensus 169 ELAkeI~edkaEVe~lKres~k~reE~-eeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~elE~F 241 (531)
||-|-|...+.|--. .+..+ |.|..+|+--..|-.|=...| +.+++-...|..+++-||+-
T Consensus 459 ellk~~e~q~~Enk~-------~~~~~~ekd~~l~~~kq~~d~e~~rik-----~ev~eal~~~k~~q~kLe~s 520 (861)
T PF15254_consen 459 ELLKVIENQKEENKR-------LRKMFQEKDQELLENKQQFDIETTRIK-----IEVEEALVNVKSLQFKLEAS 520 (861)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhHHHH
Confidence 888887666555433 33333 667777777776665533333 24455555566666666553
No 114
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.13 E-value=3.1e+02 Score=33.31 Aligned_cols=63 Identities=29% Similarity=0.376 Sum_probs=40.7
Q ss_pred hHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhH
Q 009584 127 RIEIVNSKL---VNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESM 189 (531)
Q Consensus 127 r~E~ln~KL---~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~ 189 (531)
++|.||-|+ .--|.+++.-+-++..++|.=++.|+++=.--++|-..|.++.+.+-.|-.|..
T Consensus 445 eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq 510 (1118)
T KOG1029|consen 445 ELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQ 510 (1118)
T ss_pred HHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 455555554 234456666666667777777777777777777777777777766666555544
No 115
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=65.94 E-value=92 Score=27.24 Aligned_cols=67 Identities=22% Similarity=0.294 Sum_probs=47.4
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 85 LEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKE 156 (531)
Q Consensus 85 ie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~E 156 (531)
++..+-++.-| ++|+..+..++-++ ++-|..|.+.=+..-.=|..+...|.++...|...++++|+|
T Consensus 29 lE~k~~rl~~E----k~kadqkyfa~mr~-~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~~~~~~l~~~Eke 95 (96)
T PF08647_consen 29 LEQKKLRLEAE----KAKADQKYFAAMRS-KDALDNEMKKLNTQLSKSSELIEQLKETEKEFVRKLKNLEKE 95 (96)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444455555 44555565555554 566777866666666778889999999999999999999876
No 116
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=65.89 E-value=1.9e+02 Score=30.92 Aligned_cols=161 Identities=19% Similarity=0.292 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHhhhHHHHHHHHHh--hHHHH----HHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 009584 57 VAALEAEVEQARTRIQE----LETERRSSKKKLEHFLRK--VSEEK----AAWRSREHEKIRAFIDDLKAEISRERKNRQ 126 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~e----L~~E~~s~k~eie~l~Kq--laEEK----~awKskE~eki~a~i~slk~ELe~ERk~Rk 126 (531)
|..|+.||+.-+.+-++ ...+-...+.+.+.|-+- |.||. ..+-+.+-.-+.|----+..+|+.|+..+.
T Consensus 8 ia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~ke 87 (305)
T PF14915_consen 8 IAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKE 87 (305)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHH
Confidence 67788888877666544 334445555555666553 34453 333445555555555667889999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH-------HHHhhhccHHHHHHHHHhhHHHHhhh
Q 009584 127 RIEIVNSKLVNELADAKVSAKRYMQDYEKERKERE----LIEEVCDE-------LAKEIGEDKAEVEALKRESMKLREEV 195 (531)
Q Consensus 127 r~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRe----llE~vCdE-------LAkeI~edkaEVe~lKres~k~reE~ 195 (531)
|+|. |+.-..+-+..|++|++.=-.++. .+....|| +--.|...+..-+-|-+...++.-..
T Consensus 88 rLEt-------EiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~ 160 (305)
T PF14915_consen 88 RLET-------EIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKF 160 (305)
T ss_pred HHHH-------HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHH
Confidence 7652 333334444455555554333322 22233333 33345555555566655555543222
Q ss_pred -hhhHHHHHHHHhhHH-----Hhhhhhhhhhhhhh
Q 009584 196 -DDERKMLQMAEVWRE-----ERVQMKLVDAKVAV 224 (531)
Q Consensus 196 -eeER~MLqmAEvWRE-----ERVQMKL~dAk~~l 224 (531)
--+-.+-+..+.+|| |.||.-|..|..++
T Consensus 161 nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~ 195 (305)
T PF14915_consen 161 NSLEIELHHTRDALREKTLALESVQRDLSQTQCQI 195 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112233344444443 45666666555543
No 117
>PRK04863 mukB cell division protein MukB; Provisional
Probab=65.70 E-value=3.8e+02 Score=34.24 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=6.4
Q ss_pred cccccc-ccccccc
Q 009584 403 ISEVCS-VPTKSLK 415 (531)
Q Consensus 403 ~sev~s-~~~~~~k 415 (531)
+++++. |+.+..+
T Consensus 687 vsel~~~v~~~~~~ 700 (1486)
T PRK04863 687 LSEIYDDVSLEDAP 700 (1486)
T ss_pred hhHhhhccCcchHH
Confidence 455555 4444443
No 118
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=65.36 E-value=2e+02 Score=30.81 Aligned_cols=176 Identities=20% Similarity=0.287 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHE---KIRAFIDDLKAEISRERKNRQRIEIVNS 133 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~e---ki~a~i~slk~ELe~ERk~Rkr~E~ln~ 133 (531)
+.+|..+|..++.+|.+|.+|-.. |.++=++.-.-.++-..--+-.-. .....-..-..-|+.=++-=|.+|.-|.
T Consensus 99 ~~~le~~L~~~~e~v~qLrHeL~~-kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~ 177 (306)
T PF04849_consen 99 NEALEEQLGAALEQVEQLRHELSM-KDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENE 177 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHH
Confidence 467888999999999998887543 323333333333322211111000 0000000000112222333355677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------Hhhhc---cHHHHHHHHHhhHHHH----
Q 009584 134 KLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELA--------------KEIGE---DKAEVEALKRESMKLR---- 192 (531)
Q Consensus 134 KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELA--------------keI~e---dkaEVe~lKres~k~r---- 192 (531)
+|-.|-+..+.....+ |.+.+.||.+.+.+|+ +...+ ...||..|..+...+.
T Consensus 178 ~LR~Ea~~L~~et~~~------EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k 251 (306)
T PF04849_consen 178 QLRSEASQLKTETDTY------EEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCK 251 (306)
T ss_pred HHHHHHHHhhHHHhhc------cHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877777666555433 4556677766554443 32211 2233333333322222
Q ss_pred ---hhhhhhHHHHHHHHhhHHHhhhhhhhhhhhhhHHhhHHHHHHHHHHHHHHhh
Q 009584 193 ---EEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSS 244 (531)
Q Consensus 193 ---eE~eeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~elE~FL~s 244 (531)
-|.|+=..+|+.+ --.|+.|..==..|.+||+.+-.|=.|-+.=|++
T Consensus 252 ~~~~EnEeL~q~L~~s-----ke~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~ 301 (306)
T PF04849_consen 252 QLAAENEELQQHLQAS-----KESQRQLQAELQELQDKYAECMAMLHEAQEELKT 301 (306)
T ss_pred HHhhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222233332 2355555444446778888777776666655554
No 119
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=64.33 E-value=1.6e+02 Score=29.39 Aligned_cols=68 Identities=24% Similarity=0.435 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 103 EHEKIRAFIDDLKAEISRERKNRQR-IEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAK 172 (531)
Q Consensus 103 E~eki~a~i~slk~ELe~ERk~Rkr-~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAk 172 (531)
--+.+..-|..|...+..|+.-|.. .|.++..|+++|.+...+|..-... ++.+...++..|++.+.+
T Consensus 93 ~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~--R~erE~~i~krl~e~~~~ 161 (247)
T PF06705_consen 93 RLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNE--REEREENILKRLEEEENR 161 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 3345555677888899999988876 8889999999998877666554322 222333455555555443
No 120
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=64.04 E-value=2.2 Score=49.76 Aligned_cols=91 Identities=27% Similarity=0.356 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 009584 59 ALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRS--REHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLV 136 (531)
Q Consensus 59 aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKs--kE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 136 (531)
-|..+|+.+++.+..|.+-++..-+.+..+..++.+....+-. ++.....+-|..|+.+|+.-+-..-.++.-|+.|.
T Consensus 360 Dl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~ 439 (859)
T PF01576_consen 360 DLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQ 439 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555444444444444333322211 22233445566677777777777777777777777
Q ss_pred HHHHHHHHHHHHH
Q 009584 137 NELADAKVSAKRY 149 (531)
Q Consensus 137 ~ELae~Kss~~~a 149 (531)
.||.++...+..+
T Consensus 440 ~El~dl~~q~~~~ 452 (859)
T PF01576_consen 440 DELEDLTSQLDDA 452 (859)
T ss_dssp -------------
T ss_pred Hhhccchhhhhhh
Confidence 7777776665544
No 121
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=63.80 E-value=1.1e+02 Score=35.67 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=10.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 009584 99 WRSREHEKIRAFIDDLKAEISRER 122 (531)
Q Consensus 99 wKskE~eki~a~i~slk~ELe~ER 122 (531)
|+.+|-+-...-|..|..+|..++
T Consensus 471 ~~~rei~~~~~~I~~L~~~L~e~~ 494 (652)
T COG2433 471 RKDREIRARDRRIERLEKELEEKK 494 (652)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 122
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=63.58 E-value=1.6e+02 Score=29.10 Aligned_cols=20 Identities=50% Similarity=0.478 Sum_probs=14.0
Q ss_pred HhhhccHHHHHHHHHhhHHH
Q 009584 172 KEIGEDKAEVEALKRESMKL 191 (531)
Q Consensus 172 keI~edkaEVe~lKres~k~ 191 (531)
++|...+..++.|+.+...+
T Consensus 159 ~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 159 KEISRLKSEAEALKEEIENA 178 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777766655
No 123
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=63.53 E-value=3.3e+02 Score=32.78 Aligned_cols=79 Identities=33% Similarity=0.539 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH--HhhHHHHhhhhhhHHHHHHHHhhHHHhhhhhhhhhhhhhHHhhHHH
Q 009584 154 EKERKERELIEEVCDELAKEIGEDKAEVEALK--RESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQM 231 (531)
Q Consensus 154 E~ERkaRellE~vCdELAkeI~edkaEVe~lK--res~k~reE~eeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~l 231 (531)
.-|.+-|.|. .-|.+-..++.+..-|---|- ++..++ .|+++ +--+|-+.|+| +|..-|..||+|....
T Consensus 1091 Khenqmrdl~-~qce~ni~EL~qlQNEKchlLvEhEtqkl-Kelde--~h~~~~~~w~e-----~l~~rk~~lee~~~~~ 1161 (1187)
T KOG0579|consen 1091 KHENQMRDLK-EQCEENIIELDQLQNEKCHLLVEHETQKL-KELDE--KHHEMRELWQE-----NLIARKTVLEEKFEDE 1161 (1187)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHH-----hhhhhhhHHHHHHHHH
Confidence 3344444433 347766666666555543332 233343 34443 34567789976 6888888999987543
Q ss_pred HHHHHHHHHHHhh
Q 009584 232 NKLVAELEAFLSS 244 (531)
Q Consensus 232 dkL~~elE~FL~s 244 (531)
-.++|.|..-
T Consensus 1162 ---~reqE~f~~m 1171 (1187)
T KOG0579|consen 1162 ---LREQEVFYGM 1171 (1187)
T ss_pred ---HHHHHHHhcc
Confidence 4578999764
No 124
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=62.61 E-value=2.6e+02 Score=31.26 Aligned_cols=20 Identities=10% Similarity=0.144 Sum_probs=10.6
Q ss_pred HHHHHHHhhhhHHHHHHHHH
Q 009584 117 EISRERKNRQRIEIVNSKLV 136 (531)
Q Consensus 117 ELe~ERk~Rkr~E~ln~KL~ 136 (531)
+|+.|++.=.+.|.+...+.
T Consensus 213 ~L~~e~~~L~n~e~i~~~~~ 232 (563)
T TIGR00634 213 ALEAEQQRLSNLEKLRELSQ 232 (563)
T ss_pred HHHHHHHHHhCHHHHHHHHH
Confidence 45556555555555544443
No 125
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=61.78 E-value=2.1e+02 Score=29.90 Aligned_cols=128 Identities=17% Similarity=0.331 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHH-------HhhHH-----HHHHhhhhHHHHHHHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERR-----------SSKKKLEHFL-------RKVSE-----EKAAWRSREHEKIRAFIDD 113 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~-----------s~k~eie~l~-------KqlaE-----EK~awKskE~eki~a~i~s 113 (531)
+.-|+.=....|.-+++++.+-- +.--++..+| |.++. .=-.|+.+-.+-+...++.
T Consensus 77 c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~ 156 (325)
T PF08317_consen 77 CRELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEE 156 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777777666531 1111222222 22221 2235888888888888887
Q ss_pred HHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHhhHHH
Q 009584 114 LKAEISRERK-NRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIG-EDKAEVEALKRESMKL 191 (531)
Q Consensus 114 lk~ELe~ERk-~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~-edkaEVe~lKres~k~ 191 (531)
-.+.|..+.+ +.+..+.++ .+.-+|.+.+.++..-+..|..-. .+++ .|+.+++.+|.+....
T Consensus 157 ~~~~L~~D~~~L~~~~~~l~-~~~~~l~~~~~~L~~e~~~Lk~~~--------------~e~~~~D~~eL~~lr~eL~~~ 221 (325)
T PF08317_consen 157 NLELLQEDYAKLDKQLEQLD-ELLPKLRERKAELEEELENLKQLV--------------EEIESCDQEELEALRQELAEQ 221 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH--------------hhhhhcCHHHHHHHHHHHHHH
Confidence 7777766554 555555555 555555555544444333322211 1132 3566666666666655
Q ss_pred HhhhhhhH
Q 009584 192 REEVDDER 199 (531)
Q Consensus 192 reE~eeER 199 (531)
..+++.-|
T Consensus 222 ~~~i~~~k 229 (325)
T PF08317_consen 222 KEEIEAKK 229 (325)
T ss_pred HHHHHHHH
Confidence 55554333
No 126
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=61.76 E-value=1.7e+02 Score=28.83 Aligned_cols=107 Identities=17% Similarity=0.284 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH
Q 009584 105 EKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELA-DAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEA 183 (531)
Q Consensus 105 eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELa-e~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~ 183 (531)
.-+..++..+..+.+. +-..|..|+..|. ++..-+..+.+++++.||. ++.--..+.+....-...|+.
T Consensus 56 gsl~~a~~~i~~e~e~-------~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~---~~~~~~k~~k~~~~~~~~l~K 125 (236)
T cd07651 56 GGLKNSLDTLRLETES-------MAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKK---IQSHMEKLLKKKQDQEKYLEK 125 (236)
T ss_pred chHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777664 3345667777776 5666777788888766653 333333444445555667777
Q ss_pred HHHhhHHHHhhhhhhHHHHHHHHhh--HHHhhhhhhhhhhhh
Q 009584 184 LKRESMKLREEVDDERKMLQMAEVW--REERVQMKLVDAKVA 223 (531)
Q Consensus 184 lKres~k~reE~eeER~MLqmAEvW--REERVQMKL~dAk~~ 223 (531)
.|..-.+.+.+++.=+.=.+. +| --|..|-||..|...
T Consensus 126 aK~~Y~~~c~~~e~~~~~~~~--~~~ke~eK~~~k~~k~~~~ 165 (236)
T cd07651 126 AREKYEADCSKINSYTLQSQL--TWGKELEKNNAKLNKAQSS 165 (236)
T ss_pred HHHHHHHHHHhHHHHHHHHcc--cCcchHHHHHHHHHHHHHH
Confidence 777777777666543321111 11 125566666555543
No 127
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=61.72 E-value=1.6e+02 Score=28.71 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=9.3
Q ss_pred ccHHHHHHHHHhhHHH
Q 009584 176 EDKAEVEALKRESMKL 191 (531)
Q Consensus 176 edkaEVe~lKres~k~ 191 (531)
.|-+.|+.|+++...+
T Consensus 132 ~Dp~~i~~~~~~~~~~ 147 (188)
T PF03962_consen 132 NDPEKIEKLKEEIKIA 147 (188)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 4556666666655444
No 128
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=61.43 E-value=1e+02 Score=33.18 Aligned_cols=114 Identities=17% Similarity=0.301 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREH-EKIRAFIDDLKAEISRERKNRQRIEIVNSKL 135 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~-eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL 135 (531)
...+..=+..|+.++..|.............+++-|.|+-..-...+- ..+...+...+.-.+++.+.++.-+.-..++
T Consensus 312 ~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~~~~~~e~~~~~~~ 391 (432)
T smart00498 312 IEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIKKEEEEEERRKQL 391 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444477788888888888888888888888877776542111111 3444555444444444444444445555666
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 136 VNELADAKVS-----AKRYMQDYEKERKERELIEEVCDEL 170 (531)
Q Consensus 136 ~~ELae~Kss-----~~~a~kelE~ERkaRellE~vCdEL 170 (531)
+++..+-... -.+.+.+...++.....|..||.++
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~~ 431 (432)
T smart00498 392 VKETTEYEQSSSRQKERNPSMDFEVERDFLGVLDSLLEEL 431 (432)
T ss_pred HHHHHhhhhhhhhhhhccchhhhhhhhhhhhhHHHHHHhh
Confidence 6666554432 1244666777777777788888765
No 129
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=61.40 E-value=1.6e+02 Score=28.43 Aligned_cols=84 Identities=20% Similarity=0.351 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 009584 55 SMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSK 134 (531)
Q Consensus 55 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~K 134 (531)
.-+..|+.++..-..+|.+|..+....+.++..|--.|.+ |.+-.+.+.+.+.++.-++..=-.-.++++.=|..
T Consensus 102 ~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~e-----k~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~ 176 (194)
T PF08614_consen 102 DELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKE-----KNKANEILQDELQALQLQLNMLEEKLRKLEEENRE 176 (194)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777888888888888888888888777776665554 34556677777777776666555556677777777
Q ss_pred HHHHHHHHH
Q 009584 135 LVNELADAK 143 (531)
Q Consensus 135 L~~ELae~K 143 (531)
|+.-+-+.|
T Consensus 177 Lv~Rwm~~k 185 (194)
T PF08614_consen 177 LVERWMQRK 185 (194)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776665544
No 130
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=61.18 E-value=2.9e+02 Score=32.55 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=12.7
Q ss_pred hHHHHHHHHHhhHHHHHHh
Q 009584 81 SKKKLEHFLRKVSEEKAAW 99 (531)
Q Consensus 81 ~k~eie~l~KqlaEEK~aw 99 (531)
.+.+++.|+.+|.+++...
T Consensus 509 ~~~~~~~li~~L~~~~~~~ 527 (771)
T TIGR01069 509 FKEEINVLIEKLSALEKEL 527 (771)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3456778888777776543
No 131
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.61 E-value=3.8e+02 Score=32.56 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=17.7
Q ss_pred CCcccccccccCCCCCCCCCCCCccc
Q 009584 351 SGWETVSHLEDQDSSCSPEGSAPSIK 376 (531)
Q Consensus 351 sgWETvSh~E~qGSS~Sp~gs~pSVN 376 (531)
-||=--+++|-=-++--|.|-.|--|
T Consensus 739 tGWFPenyvEki~~~e~p~~v~Pv~~ 764 (1118)
T KOG1029|consen 739 TGWFPENYVEKIPAVETPGGVPPVQN 764 (1118)
T ss_pred cCcCcHHHHhhcccCCCCCCCCchhc
Confidence 46767777777777777777666534
No 132
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=60.43 E-value=3.5e+02 Score=32.06 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q 009584 109 AFIDDLKAEISRERKNR 125 (531)
Q Consensus 109 a~i~slk~ELe~ERk~R 125 (531)
..++.++..++.-+..+
T Consensus 566 ~~~~~l~~~~~~~~~~~ 582 (908)
T COG0419 566 DRLQELKELLEELRLLR 582 (908)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 133
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=59.88 E-value=30 Score=38.74 Aligned_cols=55 Identities=24% Similarity=0.405 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 009584 61 EAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVN 137 (531)
Q Consensus 61 k~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ 137 (531)
++-|+.-|+||.||..=-...+++ ..|| |.-|+.+|+.|+++|-++|.--.||.+
T Consensus 568 k~s~delr~qi~el~~ive~lk~~---------------~~ke-------l~kl~~dleeek~mr~~lemei~~lkk 622 (627)
T KOG4348|consen 568 KNSLDELRAQIIELLCIVEALKKD---------------HGKE-------LEKLRKDLEEEKTMRSNLEMEIEKLKK 622 (627)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH---------------HHHH-------HHHHHHHHHHHHHHHhhhHhhHHHHHH
Confidence 566778899999987633332221 1122 333566888888888877765555543
No 134
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=58.60 E-value=2e+02 Score=28.68 Aligned_cols=61 Identities=20% Similarity=0.360 Sum_probs=38.2
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHH
Q 009584 83 KKLEHFLRKVSEEKAAWRSREHEKIRA---FIDDLKAEISRERKNRQRI-EIVNSKLVNELADAK 143 (531)
Q Consensus 83 ~eie~l~KqlaEEK~awKskE~eki~a---~i~slk~ELe~ERk~Rkr~-E~ln~KL~~ELae~K 143 (531)
..+..|.+.|..|+..++..|..++.. .|..|...|+.|-|-|-.+ ..+.+.+-..+..+.
T Consensus 12 e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~ 76 (247)
T PF06705_consen 12 ERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQ 76 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888888888777554 4677777777776665432 233444444443333
No 135
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=58.03 E-value=73 Score=35.78 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 132 NSKLVNELADAKVSAKRYMQDYEK 155 (531)
Q Consensus 132 n~KL~~ELae~Kss~~~a~kelE~ 155 (531)
|..+-+||..++.++.+|-++||-
T Consensus 304 ~e~~rkelE~lR~~L~kAEkele~ 327 (575)
T KOG4403|consen 304 NETSRKELEQLRVALEKAEKELEA 327 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445777777777777666554
No 136
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=57.89 E-value=3.1e+02 Score=30.61 Aligned_cols=35 Identities=14% Similarity=0.057 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhH
Q 009584 155 KERKERELIEEVCDELAKEIGEDKAEVEALKRESM 189 (531)
Q Consensus 155 ~ERkaRellE~vCdELAkeI~edkaEVe~lKres~ 189 (531)
+.-+.-.++-.|-.+++..|..+++....|+....
T Consensus 144 ~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~ 178 (420)
T COG4942 144 RSVRLAIYYGALNPARAERIDALKATLKQLAAVRA 178 (420)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566667777777777777776666665433
No 137
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=57.44 E-value=1.6e+02 Score=27.10 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHH
Q 009584 159 ERELIEEVCDELAKEIGEDKAEVEALKR 186 (531)
Q Consensus 159 aRellE~vCdELAkeI~edkaEVe~lKr 186 (531)
.+-.+..++..++.+|+--..|++.||.
T Consensus 120 lk~~~~~~~tq~~~e~rkke~E~~kLk~ 147 (151)
T PF11559_consen 120 LKNQLQQRKTQYEHELRKKEREIEKLKE 147 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444455555553
No 138
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=57.34 E-value=2e+02 Score=28.24 Aligned_cols=84 Identities=25% Similarity=0.277 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHH
Q 009584 112 DDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKL 191 (531)
Q Consensus 112 ~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~ 191 (531)
..++.=..+-++.|++.+....||.+++...-..+.++.+.|+..-+.-+....-.........-.+++++.++....+.
T Consensus 94 ~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~ 173 (251)
T cd07653 94 KELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEKAKANANLK 173 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHH
Confidence 44445555667889999999999999999988888888888887766655555444443333333456666666665554
Q ss_pred Hhhh
Q 009584 192 REEV 195 (531)
Q Consensus 192 reE~ 195 (531)
...+
T Consensus 174 ~~~~ 177 (251)
T cd07653 174 TQAA 177 (251)
T ss_pred HHHH
Confidence 4333
No 139
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=57.07 E-value=1.4e+02 Score=26.71 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009584 148 RYMQDYEKERKERELIEEVCDELAKEIG 175 (531)
Q Consensus 148 ~a~kelE~ERkaRellE~vCdELAkeI~ 175 (531)
++-++|..+|+...+|-.|---|.-|-|
T Consensus 62 ~~~~~lk~~r~~~~v~k~v~q~lI~gSg 89 (106)
T PF05837_consen 62 KLEKELKKSRQRWRVMKNVFQALIVGSG 89 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3345556666666666666655555444
No 140
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=56.94 E-value=2.1e+02 Score=28.71 Aligned_cols=80 Identities=33% Similarity=0.532 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHH---HHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 009584 63 EVEQARTRIQELETERRSSKK---KLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNEL 139 (531)
Q Consensus 63 EL~~Ar~rI~eL~~E~~s~k~---eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~EL 139 (531)
|--|.|. |.+|+.|++.... +-|+|.--|. +|+++ ++..|+.|+.-.++.|.-|+|+...|
T Consensus 108 E~rhrr~-i~eLe~EKrkh~~~~aqgDD~t~lLE--------kEReR-------Lkq~lE~Ek~~~~~~EkE~~K~~~~l 171 (192)
T PF09727_consen 108 EKRHRRT-IQELEEEKRKHAEDMAQGDDFTNLLE--------KERER-------LKQQLEQEKAQQKKLEKEHKKLVSQL 171 (192)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHccchHHHHHH--------HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334443 7888888766543 2233333222 23344 57799999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009584 140 ADAKVSAKRYMQDYEKERK 158 (531)
Q Consensus 140 ae~Kss~~~a~kelE~ERk 158 (531)
.+-+.-.+.++--|-+|++
T Consensus 172 ~eE~~k~K~~~l~Lv~E~k 190 (192)
T PF09727_consen 172 EEERTKLKSFVLMLVKERK 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8877777777777777765
No 141
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=56.92 E-value=9.3 Score=33.64 Aligned_cols=34 Identities=38% Similarity=0.493 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHH
Q 009584 159 ERELIEEVCDELAKEIGEDKAEVEALKRESMKLR 192 (531)
Q Consensus 159 aRellE~vCdELAkeI~edkaEVe~lKres~k~r 192 (531)
+..++.+.=.+-..-|.+.+++++.|..+...++
T Consensus 87 A~~i~~~A~~~a~~i~~~A~~~~~~l~~~~~~lk 120 (131)
T PF05103_consen 87 AEEIIEEAQKEAEEIIEEARAEAERLREEIEELK 120 (131)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444455555555554444433
No 142
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=56.85 E-value=1e+02 Score=25.97 Aligned_cols=16 Identities=44% Similarity=0.484 Sum_probs=10.7
Q ss_pred HhhhccHHHHHHHHHh
Q 009584 172 KEIGEDKAEVEALKRE 187 (531)
Q Consensus 172 keI~edkaEVe~lKre 187 (531)
.+|.+.++|+++|+++
T Consensus 47 ~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 47 EENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455677777777765
No 143
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=56.82 E-value=2.7e+02 Score=29.66 Aligned_cols=62 Identities=16% Similarity=0.324 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 009584 56 MVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRER 122 (531)
Q Consensus 56 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ER 122 (531)
-++++..+-+...+.|+++...-++.+.+-+-+..+|.+=|. +++.+.+-++.+..+...-+
T Consensus 35 ~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~-----kR~ein~kl~eL~~~~~~l~ 96 (294)
T COG1340 35 EASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKE-----KRDEINAKLQELRKEYRELK 96 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 367777778888888888887777777666666666666554 33555555555555554433
No 144
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=56.81 E-value=49 Score=26.95 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHH
Q 009584 111 IDDLKAEISRERKNRQRIEIV 131 (531)
Q Consensus 111 i~slk~ELe~ERk~Rkr~E~l 131 (531)
|+.|..+|+.|++.|.=+|.+
T Consensus 3 i~~L~~~i~~E~ki~~Gae~m 23 (70)
T PF02185_consen 3 IEELQKKIDKELKIKEGAENM 23 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554443
No 145
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=56.52 E-value=2.1e+02 Score=28.35 Aligned_cols=114 Identities=25% Similarity=0.371 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 009584 56 MVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKL 135 (531)
Q Consensus 56 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL 135 (531)
-+.+.+.-|+.|.++...+.. ....++ ||.++... +|+.- -+-+.+.+..+..+|. +.|+.++.+|+.=
T Consensus 98 d~~~w~~al~na~a~lehq~~----R~~NLe-Ll~~~g~n--aW~~~-n~~Le~~~~~le~~l~---~~k~~ie~vN~~R 166 (221)
T PF05700_consen 98 DVEAWKEALDNAYAQLEHQRL----RLENLE-LLSKYGEN--AWLIH-NEQLEAMLKRLEKELA---KLKKEIEEVNRER 166 (221)
T ss_pred cHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHHHHhHH--HHHHH-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 467777778887776644332 223343 67777765 67642 2444455555555553 4667777777643
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH
Q 009584 136 VNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAE 180 (531)
Q Consensus 136 ~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaE 180 (531)
-..=.++..-+...-+....--...--||..|-+|-.+|.+.+++
T Consensus 167 K~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~ 211 (221)
T PF05700_consen 167 KRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRK 211 (221)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222222222222222222223334555666655444444333
No 146
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=56.40 E-value=1.4e+02 Score=26.25 Aligned_cols=50 Identities=36% Similarity=0.373 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHH
Q 009584 134 KLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMK 190 (531)
Q Consensus 134 KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k 190 (531)
++-+=|.+...-..+|++..+.|++.+.-.+ .+|....+++..|+.+..+
T Consensus 50 ~f~~flken~~k~~rA~k~a~~e~k~~~~k~-------~ei~~l~~~l~~l~~~~~k 99 (126)
T PF13863_consen 50 KFDKFLKENEAKRERAEKRAEEEKKKKEEKE-------AEIKKLKAELEELKSEISK 99 (126)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 4445555666666677777777777655444 4444555555555544443
No 147
>PRK00106 hypothetical protein; Provisional
Probab=55.63 E-value=3.6e+02 Score=30.77 Aligned_cols=12 Identities=17% Similarity=0.210 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 009584 109 AFIDDLKAEISR 120 (531)
Q Consensus 109 a~i~slk~ELe~ 120 (531)
.-+...+.|++.
T Consensus 79 eEi~~~R~ElEk 90 (535)
T PRK00106 79 EEARKYREEIEQ 90 (535)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 148
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=54.66 E-value=86 Score=28.78 Aligned_cols=68 Identities=24% Similarity=0.395 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 101 SREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDE 169 (531)
Q Consensus 101 skE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdE 169 (531)
.++.+.+.+.+......++...+..+.+-.|-.|..+||+++|....+...+|-.-++.= .+--.|--
T Consensus 6 ~~~~~~~~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~aG~~RL-~v~a~C~~ 73 (125)
T PF03245_consen 6 KRQRDQAQAALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAAGNKRL-RVKATCPA 73 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCCceE-EEeccCCC
Confidence 345566777788888888999999999999999999999999999999988887764321 13345554
No 149
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=54.64 E-value=2.5e+02 Score=28.68 Aligned_cols=151 Identities=17% Similarity=0.183 Sum_probs=0.0
Q ss_pred ccccCcCC-CCChHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhh
Q 009584 23 ATKWNPVC-LKTPAEVRQIYSHMKHLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRS 101 (531)
Q Consensus 23 ATKWd~~~-lkts~el~~v~~~~~leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKs 101 (531)
|-+|.... ..|+.....++... ++.-......+...|+.++..-..=+.+....++..+..++.+++. .-+..-..
T Consensus 53 ak~~~~~~~~Gt~~~~~~~~~~e-~e~~a~~H~~la~~L~~~~~~l~~~~~~~~k~rK~~ke~~~~~~~~--~~~~~~~~ 129 (269)
T cd07673 53 AKSASNYSQLGTFAPVWDVFKTS-TEKLANCHLELVRKLQELIKEVQKYGEEQVKSHKKTKEEVAGTLEA--VQNIQSIT 129 (269)
T ss_pred HhhhccCCCcChHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHH--HHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHH-
Q 009584 102 REHEKIRAFIDDLKAEISRERK---NRQRIEIVNSKLVNELADAKVSAKRY-----------------MQDYEKERKER- 160 (531)
Q Consensus 102 kE~eki~a~i~slk~ELe~ERk---~Rkr~E~ln~KL~~ELae~Kss~~~a-----------------~kelE~ERkaR- 160 (531)
+.-+|.+..-...-.|.+.=++ .++.+|.++.|+.+-=.+-+.++.++ +|++|.+|-..
T Consensus 130 ~~~~KaK~~Y~~~c~e~e~~~~~~~t~k~leK~~~k~~ka~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~~ 209 (269)
T cd07673 130 QALQKSKENYNAKCLEQERLKKEGATQREIEKAAVKSKKATESYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIRI 209 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---------------HHHHHHHHHHHHhhhc
Q 009584 161 ---------------ELIEEVCDELAKEIGE 176 (531)
Q Consensus 161 ---------------ellE~vCdELAkeI~e 176 (531)
..+-.+|++|.+.|..
T Consensus 210 k~~l~~y~~~~s~~~~~~~~~~e~ir~~le~ 240 (269)
T cd07673 210 KEIIGSYSNSVKEIHIQIGQVHEEFINNMAN 240 (269)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHh
No 150
>PTZ00121 MAEBL; Provisional
Probab=53.89 E-value=6.3e+02 Score=32.98 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=8.2
Q ss_pred HHHhhhccHHHHHHHHHhhHH
Q 009584 170 LAKEIGEDKAEVEALKRESMK 190 (531)
Q Consensus 170 LAkeI~edkaEVe~lKres~k 190 (531)
.++.+.+-+...++.+++.++
T Consensus 1210 E~RraEEARraEEErR~EE~R 1230 (2084)
T PTZ00121 1210 EERKAEEARKAEDAKKAEAVK 1230 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344433333444444333
No 151
>PRK14145 heat shock protein GrpE; Provisional
Probab=52.81 E-value=1.2e+02 Score=30.37 Aligned_cols=68 Identities=18% Similarity=0.242 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 009584 55 SMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSK 134 (531)
Q Consensus 55 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~K 134 (531)
.-+..|+.+|..++.++.+|...-.+...+++.+.|+...|+...+ .....+
T Consensus 45 ~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~----------------------------~~a~e~ 96 (196)
T PRK14145 45 DEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMV----------------------------EYGKEQ 96 (196)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHH
Confidence 4467788888888888888877777777777777776665544222 234567
Q ss_pred HHHHHHHHHHHHHHHH
Q 009584 135 LVNELADAKVSAKRYM 150 (531)
Q Consensus 135 L~~ELae~Kss~~~a~ 150 (531)
|+++|-.+--.|.+|+
T Consensus 97 ~~~~LLpV~DnLerAl 112 (196)
T PRK14145 97 VILELLPVMDNFERAL 112 (196)
T ss_pred HHHHHHhHHhHHHHHH
Confidence 7777777776666665
No 152
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=52.80 E-value=1.6e+02 Score=30.05 Aligned_cols=62 Identities=26% Similarity=0.310 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhh
Q 009584 135 LVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVD 196 (531)
Q Consensus 135 L~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~reE~e 196 (531)
|..|.+.++.-+.++-.++++..+.=+-.+.=-+.|-|.+.+...|-..|..++.++++.++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 44444444544555555555555554445555555556666666666777777777766654
No 153
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=52.57 E-value=4.9e+02 Score=31.35 Aligned_cols=69 Identities=23% Similarity=0.385 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHhhHHHhhhhhhhhhh
Q 009584 147 KRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAK 221 (531)
Q Consensus 147 ~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~reE~eeER~MLqmAEvWREERVQMKL~dAk 221 (531)
....++++.=+|.=+-|...=|.|+..|.+..+|+..|++.+. +++-+|--.-.--.++||++-+..++
T Consensus 219 n~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~------~~~~~mrd~~~~~~e~~~~~~~~~~k 287 (916)
T KOG0249|consen 219 NRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSL------EKEQELRDHLRTYAERRRETETTNYK 287 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH------hhhhhhcchhhhhHHHHHhhcchhhh
Confidence 3444555555555555666667788888888888888885222 22333333333445556665555333
No 154
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=52.41 E-value=4.6e+02 Score=30.93 Aligned_cols=15 Identities=0% Similarity=0.353 Sum_probs=6.4
Q ss_pred hHHHHHHHHHhhHHH
Q 009584 81 SKKKLEHFLRKVSEE 95 (531)
Q Consensus 81 ~k~eie~l~KqlaEE 95 (531)
.+.+|.+=++.+..+
T Consensus 559 ar~ei~~rv~~Lk~~ 573 (717)
T PF10168_consen 559 AREEIQRRVKLLKQQ 573 (717)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 155
>KOG3470 consensus Beta-tubulin folding cofactor A [Posttranslational modification, protein turnover, chaperones]
Probab=52.18 E-value=1.8e+02 Score=26.98 Aligned_cols=88 Identities=24% Similarity=0.333 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHhhHHHhhhhhhhhhhhhhHHhhHHHHHHHHHHHHHHh
Q 009584 164 EEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLS 243 (531)
Q Consensus 164 E~vCdELAkeI~edkaEVe~lKres~k~reE~eeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~elE~FL~ 243 (531)
-.+|..|.|+++-|+.||..--...+++++.-.++--+=+=.+|.-|=|+ =| -+=+.-|.+.-.+||.||.
T Consensus 12 t~vvkRlvKE~~~Yekev~~eeakvakl~~dg~d~ydlkkQeeVl~et~~--ml-------PD~~~RL~~a~~DLe~~l~ 82 (107)
T KOG3470|consen 12 TGVVKRLVKEVEYYEKEVKEEEAKVAKLKDDGADPYDLKKQEEVLKETRM--ML-------PDSQRRLRKAYEDLESILA 82 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH--HC-------hHHHHHHHHHHHHHHHHHh
Confidence 35777788888777777776666666666555545445555555555443 23 3334456667788999998
Q ss_pred hcCCCCchhHHHHHHHH
Q 009584 244 SRSINPDIQEMKEAEML 260 (531)
Q Consensus 244 sk~~~~d~~~~r~a~~~ 260 (531)
+-+...+.-+++.|...
T Consensus 83 ~~~~~ee~~e~~~A~~~ 99 (107)
T KOG3470|consen 83 DEQYLEETPELKSANTY 99 (107)
T ss_pred cccchhccHHHHHHHHH
Confidence 85545555555555443
No 156
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=52.15 E-value=4.7 Score=45.84 Aligned_cols=64 Identities=33% Similarity=0.462 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHh---hHHHHhhh
Q 009584 132 NSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRE---SMKLREEV 195 (531)
Q Consensus 132 n~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKre---s~k~reE~ 195 (531)
+.-++.++++++.-+...-.++++--.++.-++.-|.++-++|.+.+.+++.|... ...+++|+
T Consensus 234 ~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDEl 300 (713)
T PF05622_consen 234 SQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDEL 300 (713)
T ss_dssp -------------------------------------------------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34566777777777777777776544556666777788777777777777776633 34445555
No 157
>PRK14140 heat shock protein GrpE; Provisional
Probab=51.96 E-value=2.5e+02 Score=27.89 Aligned_cols=54 Identities=15% Similarity=0.310 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHH
Q 009584 53 AVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEK 106 (531)
Q Consensus 53 ~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~ek 106 (531)
..-+|..|..+|...+..+.+|...-....-+++.+.|+...|+...+.--.++
T Consensus 35 ~~~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~ 88 (191)
T PRK14140 35 EAELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQS 88 (191)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777765555555566666666655555444333333
No 158
>PRK14139 heat shock protein GrpE; Provisional
Probab=51.91 E-value=1.2e+02 Score=29.99 Aligned_cols=66 Identities=24% Similarity=0.276 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLV 136 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 136 (531)
+..|+.+|...+.++.+|........-+++.+.|++..|+...+ .....+++
T Consensus 34 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~----------------------------~~a~~~~~ 85 (185)
T PRK14139 34 APALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAH----------------------------KFAIESFA 85 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHH
Confidence 55677777777777777766556666666666665555543222 12355677
Q ss_pred HHHHHHHHHHHHHH
Q 009584 137 NELADAKVSAKRYM 150 (531)
Q Consensus 137 ~ELae~Kss~~~a~ 150 (531)
++|-.+--.|.+|+
T Consensus 86 ~~LLpv~DnLerAl 99 (185)
T PRK14139 86 ESLLPVKDSLEAAL 99 (185)
T ss_pred HHHhhHHhHHHHHH
Confidence 77777776666665
No 159
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=51.89 E-value=1.7e+02 Score=32.86 Aligned_cols=100 Identities=25% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHhhhhcccccccchhhhHHHHHH-------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHH
Q 009584 36 EVRQIYSHMKHLDQQVSAVSMVAALE-------AEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIR 108 (531)
Q Consensus 36 el~~v~~~~~leeq~~s~~Slv~aLk-------~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~ 108 (531)
+..+-|-+++| ||++++-++..-+- -+-..--.+|+-|..|-.+++..+..--|+..|+
T Consensus 214 e~ekr~Lq~Kl-Dqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek------------- 279 (552)
T KOG2129|consen 214 EQEKRYLQKKL-DQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEK------------- 279 (552)
T ss_pred HHHHHHHHHHh-cCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 109 AFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEK 155 (531)
Q Consensus 109 a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ 155 (531)
+..=+..|+..|...+.+-+||.+|| +-+-++++.+-|-|.
T Consensus 280 -----~~qy~~Ee~~~reen~rlQrkL~~e~-erRealcr~lsEses 320 (552)
T KOG2129|consen 280 -----LMQYRAEEVDHREENERLQRKLINEL-ERREALCRMLSESES 320 (552)
T ss_pred -----HHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhH
No 160
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=51.44 E-value=1.9e+02 Score=26.30 Aligned_cols=58 Identities=33% Similarity=0.458 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHh
Q 009584 130 IVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRE 187 (531)
Q Consensus 130 ~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKre 187 (531)
.+..+|-.+|+-...++.++--=++.-++.++--+....++-.+|...+.+++.||.+
T Consensus 46 ~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~ 103 (139)
T PF05615_consen 46 FLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEE 103 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544444545555555555555555555555555554443
No 161
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=50.70 E-value=4e+02 Score=29.77 Aligned_cols=38 Identities=21% Similarity=0.367 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSE 94 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaE 94 (531)
|..+..++...+.+-..|+++..+.+.+|..+-.++.+
T Consensus 47 i~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~ 84 (420)
T COG4942 47 IAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIE 84 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555554444443
No 162
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=50.51 E-value=4.5e+02 Score=30.35 Aligned_cols=45 Identities=22% Similarity=0.380 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHh
Q 009584 55 SMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAW 99 (531)
Q Consensus 55 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~aw 99 (531)
--+..|+.+|+..+.+|.++..+....+..+..+...+.+.+..-
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~ 372 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAEN 372 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888888888888777777666666555554433
No 163
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=50.40 E-value=2.2e+02 Score=26.70 Aligned_cols=45 Identities=24% Similarity=0.379 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH
Q 009584 53 AVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKA 97 (531)
Q Consensus 53 ~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~ 97 (531)
+..-+.+|..++..-+.++.+|..+....+.++..|.+.++.+-+
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el 114 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEEL 114 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 344588999999999999999999999999999999999988755
No 164
>PRK14158 heat shock protein GrpE; Provisional
Probab=50.32 E-value=1.6e+02 Score=29.42 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 009584 54 VSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNS 133 (531)
Q Consensus 54 ~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~ 133 (531)
-.-+..|+.+|.....++.+|...-.+..-+++.+.|+...|+...+. ....
T Consensus 39 ~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~----------------------------~a~~ 90 (194)
T PRK14158 39 ADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLK----------------------------YGNE 90 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHH
Confidence 344677777777777777777655555566666666655555432221 2456
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009584 134 KLVNELADAKVSAKRYMQ 151 (531)
Q Consensus 134 KL~~ELae~Kss~~~a~k 151 (531)
+++++|..+--.|.+|+.
T Consensus 91 ~~~~~lLpV~DnLerAl~ 108 (194)
T PRK14158 91 SLILEILPAVDNMERALD 108 (194)
T ss_pred HHHHHHHhHHhHHHHHHh
Confidence 677777777666666653
No 165
>PRK14143 heat shock protein GrpE; Provisional
Probab=50.28 E-value=3e+02 Score=28.24 Aligned_cols=69 Identities=20% Similarity=0.318 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLV 136 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 136 (531)
+..|+.+|...+..+.+|...-.+...+++.|.|+...|+...+. ..+.+++
T Consensus 69 ~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~----------------------------~a~~~~~ 120 (238)
T PRK14143 69 LAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRL----------------------------QLKCNTL 120 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHH
Confidence 566666666666666666544444455555555544444332222 3456677
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009584 137 NELADAKVSAKRYMQDY 153 (531)
Q Consensus 137 ~ELae~Kss~~~a~kel 153 (531)
++|..+--.|.+|+.-+
T Consensus 121 ~~lLpV~DnLerAl~~~ 137 (238)
T PRK14143 121 SEILPVVDNFERARQQL 137 (238)
T ss_pred HHHHHHHhHHHHHHhcc
Confidence 77777766666666543
No 166
>PRK14156 heat shock protein GrpE; Provisional
Probab=49.98 E-value=97 Score=30.42 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 009584 59 ALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNE 138 (531)
Q Consensus 59 aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~E 138 (531)
++..+|+..+.++.+|...-.....+++.+.|+...|+... ..-.+.+++++
T Consensus 31 ~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~----------------------------~~~a~~~~~~~ 82 (177)
T PRK14156 31 PEKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQL----------------------------QRYRSQDLAKA 82 (177)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHH
Confidence 55666677777777765544444455555555444433211 12356778888
Q ss_pred HHHHHHHHHHHHH
Q 009584 139 LADAKVSAKRYMQ 151 (531)
Q Consensus 139 Lae~Kss~~~a~k 151 (531)
|..+--.|.+|+.
T Consensus 83 LLpVlDnLerAl~ 95 (177)
T PRK14156 83 ILPSLDNLERALA 95 (177)
T ss_pred HhhHHhHHHHHHh
Confidence 8888877777764
No 167
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=49.81 E-value=4.3e+02 Score=29.83 Aligned_cols=45 Identities=22% Similarity=0.336 Sum_probs=28.8
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHhhHHHH
Q 009584 46 HLDQQVSAVSMVAALEAEVEQARTRIQELETER---RSSKKKLEHFLRKVSEEK 96 (531)
Q Consensus 46 leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~---~s~k~eie~l~KqlaEEK 96 (531)
|-|.-++++|.|-|+|. ++-.|+++|- ++-...++-|.||.-+|-
T Consensus 376 LAEETAATiSAIEAMKn------AhrEEmeRELeKsqSvnsdveaLRrQyleel 423 (593)
T KOG4807|consen 376 LAEETAATISAIEAMKN------AHREEMERELEKSQSVNSDVEALRRQYLEEL 423 (593)
T ss_pred hhhhhhhhhHHHHHHHH------HHHHHHHHHHHhhhccccChHHHHHHHHHHH
Confidence 55677788898888874 2233333332 355567788888777763
No 168
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=49.70 E-value=4.9e+02 Score=30.52 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH
Q 009584 54 VSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVS 93 (531)
Q Consensus 54 ~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~Kqla 93 (531)
++.+..|..+|.+.++.+.++..+-...+.+.+.|-+++.
T Consensus 181 ~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~ 220 (670)
T KOG0239|consen 181 ESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG 220 (670)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 3445555556666666555555555554444444444333
No 169
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=49.68 E-value=5.3e+02 Score=30.87 Aligned_cols=128 Identities=23% Similarity=0.265 Sum_probs=69.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHH--HHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 009584 53 AVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEE--KAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEI 130 (531)
Q Consensus 53 ~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEE--K~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ 130 (531)
..+....|..+|+...+...+|+-+-.....+++.++-+|.|= ++.-=..+.+..+..-.-+-.+|...+-..+-++.
T Consensus 587 ~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~ 666 (769)
T PF05911_consen 587 DTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLET 666 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566777777777777777777777777777777766432 11111111111111112222333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHh
Q 009584 131 VNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRE 187 (531)
Q Consensus 131 ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKre 187 (531)
--.-+-.|+..+..-+...--+|++||.. |.|+...-.+.+.+++..+++
T Consensus 667 ~~~~~e~E~~~l~~Ki~~Le~Ele~er~~-------~~e~~~kc~~Le~el~r~~~~ 716 (769)
T PF05911_consen 667 RLKDLEAEAEELQSKISSLEEELEKERAL-------SEELEAKCRELEEELERMKKE 716 (769)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhc-------chhhhhHHHHHHHHHHhhhcc
Confidence 33333456666666666666777777763 666666666666666666554
No 170
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=49.65 E-value=5.8e+02 Score=31.31 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 009584 56 MVAALEAEVEQARTRIQELETERRSSKKKLEHFL 89 (531)
Q Consensus 56 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~ 89 (531)
-+.+|.++|+++|..-++-..|++..+++...|.
T Consensus 366 ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~ 399 (980)
T KOG0980|consen 366 QLLALEGELQEQQREAQENREEQEQLRNELAQLL 399 (980)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999988777776666666666555444
No 171
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=49.63 E-value=2.8e+02 Score=27.68 Aligned_cols=100 Identities=21% Similarity=0.252 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 009584 62 AEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELAD 141 (531)
Q Consensus 62 ~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae 141 (531)
..++.++..+++..+..+..+++++.+-. |.....+-++.+..|++.=+.-.++++..-..+-.++++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~sQ~~id~~~~------------e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~ 88 (251)
T PF11932_consen 21 ATLDQAQQVQQQWVQAAQQSQKRIDQWDD------------EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELAS 88 (251)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666665554433 345556666777777776666666666666666666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009584 142 AKVSAKRYMQDYEKERKERELIEEVCDELAKEIGE 176 (531)
Q Consensus 142 ~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~e 176 (531)
.+..+.... +-.+.-.-+|..+++.|-.-|..
T Consensus 89 L~~qi~~~~---~~~~~l~p~m~~m~~~L~~~v~~ 120 (251)
T PF11932_consen 89 LEQQIEQIE---ETRQELVPLMEQMIDELEQFVEL 120 (251)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhc
Confidence 443333221 11222344666677777665553
No 172
>PRK14146 heat shock protein GrpE; Provisional
Probab=49.57 E-value=1.2e+02 Score=30.53 Aligned_cols=43 Identities=19% Similarity=0.404 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHH
Q 009584 56 MVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAA 98 (531)
Q Consensus 56 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~a 98 (531)
-+..|+.+|+.++.++.+|...-.+...+++.+.|+...|+..
T Consensus 55 ~~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~ 97 (215)
T PRK14146 55 TETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVS 97 (215)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788888888888888766666666777777766665543
No 173
>PLN03188 kinesin-12 family protein; Provisional
Probab=48.71 E-value=6.8e+02 Score=31.85 Aligned_cols=68 Identities=24% Similarity=0.368 Sum_probs=42.1
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHH-----------HHHhhHH--HHHHhhhhHHHHHHHHHH
Q 009584 49 QQVSAVSMVAALEAEVEQARTRIQELETERRSSKK---KLEH-----------FLRKVSE--EKAAWRSREHEKIRAFID 112 (531)
Q Consensus 49 q~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~---eie~-----------l~KqlaE--EK~awKskE~eki~a~i~ 112 (531)
-++--|+|.--|++||+-.|.++.+|..|-...|+ |++. ++.|++| ||-.-=---|-+|...|+
T Consensus 1059 ~es~wislteelr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~ 1138 (1320)
T PLN03188 1059 AESKWISLAEELRTELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGID 1138 (1320)
T ss_pred HhhhheechHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456888888888888888888888887776665 3433 3344442 443333334555555555
Q ss_pred HHHH
Q 009584 113 DLKA 116 (531)
Q Consensus 113 slk~ 116 (531)
+||.
T Consensus 1139 dvkk 1142 (1320)
T PLN03188 1139 DVKK 1142 (1320)
T ss_pred HHHH
Confidence 5544
No 174
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=48.68 E-value=3.4e+02 Score=28.36 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 108 RAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKER 160 (531)
Q Consensus 108 ~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaR 160 (531)
.+....|+.|+...|..-...+... ..||..+|..+...-.+++.-|+.-
T Consensus 183 ~~~~~~L~~e~~~Lk~~~~e~~~~D---~~eL~~lr~eL~~~~~~i~~~k~~l 232 (325)
T PF08317_consen 183 RERKAELEEELENLKQLVEEIESCD---QEELEALRQELAEQKEEIEAKKKEL 232 (325)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcC---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333333322 2455555555555555554444433
No 175
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=48.35 E-value=1.4e+02 Score=25.28 Aligned_cols=61 Identities=26% Similarity=0.478 Sum_probs=42.5
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHH
Q 009584 46 HLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDL 114 (531)
Q Consensus 46 leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~sl 114 (531)
|+.+-...|--|..|++|++.-+.....|..+...-+.+ ..++.+|+.+|. ++|++.|.-|
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~e----n~~L~~e~~~~~----~rl~~LL~kl 69 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEE----NEQLKQERNAWQ----ERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHH----HHHHHHHHhh
Confidence 344444566778999999999999888888766655555 556668888885 4556655544
No 176
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=48.32 E-value=5.7e+02 Score=30.86 Aligned_cols=74 Identities=16% Similarity=0.046 Sum_probs=41.2
Q ss_pred CCCCcchhhhcccCCCCCCcccccCCCCCCCCCCccccccCccccccccCCcccCCCCccCCCCCCCCCCCCcccccccc
Q 009584 281 NPDDIFSVFEDVNFGESNEREIEPSGAYSPASHASKMHTVSPEVNVINKDNLHRHSNAYVDQNGDIEEDESGWETVSHLE 360 (531)
Q Consensus 281 ~~dD~~sifeel~~~e~~~~ei~~c~~~sp~~~aski~~~sp~~~~~~~~~~~~~s~~~~~~n~~~eeD~sgWETvSh~E 360 (531)
++.|--+--.++++.. -..--.+|+---|.+ ++.-..+.+-+..++..++..++.+- +.+..+--++||.+
T Consensus 421 ~s~~~~s~p~e~~~s~-~~~~~~~~~~~~p~~------~~~~~~~r~~~~t~ke~sp~~~p~~~--~~~~~~~~~~~~~d 491 (916)
T KOG0249|consen 421 NSSDRSSSPGSGNFSP-AREMDRMGVMTLPSD------LVVSEDNRYDKATIKETSPPSSPRAL--RLESRSLPLGSQED 491 (916)
T ss_pred ccccccCCCcccCcCc-cccccCCccccCccc------ccccccccccCCCCcccCCCCCccch--hhccCCCCCCCCCC
Confidence 4455555555555322 123335666555543 24445566666666678888888884 34444456666666
Q ss_pred cCC
Q 009584 361 DQD 363 (531)
Q Consensus 361 ~qG 363 (531)
..+
T Consensus 492 ~~~ 494 (916)
T KOG0249|consen 492 PRS 494 (916)
T ss_pred CCC
Confidence 554
No 177
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=48.09 E-value=2.4e+02 Score=26.52 Aligned_cols=13 Identities=23% Similarity=0.204 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 009584 137 NELADAKVSAKRY 149 (531)
Q Consensus 137 ~ELae~Kss~~~a 149 (531)
.+|...+..+...
T Consensus 130 ~~l~~l~~~~~~~ 142 (191)
T PF04156_consen 130 ERLDSLDESIKEL 142 (191)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 178
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=47.53 E-value=2.3e+02 Score=26.05 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 127 RIEIVNSKLVNELADAKVSAKRYMQDYEKERKEREL 162 (531)
Q Consensus 127 r~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRel 162 (531)
.++..++.+..|+..++..+......|+-|-|.++.
T Consensus 105 ~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~ 140 (151)
T PF11559_consen 105 SLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKER 140 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666677777777777777777777776653
No 179
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=47.20 E-value=2.3e+02 Score=25.90 Aligned_cols=61 Identities=28% Similarity=0.338 Sum_probs=28.3
Q ss_pred HHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHhhHHHhhhhhhhhhhhhhHHhhHHHHHHHHHHHHH
Q 009584 170 LAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAF 241 (531)
Q Consensus 170 LAkeI~edkaEVe~lKres~k~reE~eeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~elE~F 241 (531)
+-..|...+++++..+.........+++++.+|. -.+.+++-.+++=..+=.-|...||++
T Consensus 71 ~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le-----------~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 71 LQQEINELKAEAESAKAELEESEASWEEQKEQLE-----------KELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444445555555544444433333333333332 224455444444444444466777654
No 180
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=46.83 E-value=3.4e+02 Score=30.77 Aligned_cols=106 Identities=20% Similarity=0.339 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHH
Q 009584 127 RIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAE 206 (531)
Q Consensus 127 r~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~reE~eeER~MLqmAE 206 (531)
++|.++..+..-+.+++ ++++...++|.++ .++|+-|-+|--.+..-..|...++.....+++. -.
T Consensus 348 qlen~k~~~e~~~~e~~-~l~~~~~~~e~~k---k~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~kn----------q~ 413 (493)
T KOG0804|consen 348 QLENQKQYYELLITEAD-SLKQESSDLEAEK---KIVERKLQQLQTKLKKCQKELKEEREENKKLIKN----------QD 413 (493)
T ss_pred HHHhHHHHHHHHHHHHH-hhhhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------HH
Confidence 44445555544444433 4566677777655 4788888888777776666665555333333333 36
Q ss_pred hhHH--HhhhhhhhhhhhhhHHhhHHHHHHHHHHHHHHhhcC
Q 009584 207 VWRE--ERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSRS 246 (531)
Q Consensus 207 vWRE--ERVQMKL~dAk~~leeK~s~ldkL~~elE~FL~sk~ 246 (531)
+|+. +-++-.+.+|..+.+++..-|..-..+|=-||.+..
T Consensus 414 vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qq 455 (493)
T KOG0804|consen 414 VWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQ 455 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhh
Confidence 7764 344555677777778887777777777878888754
No 181
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=46.64 E-value=2.4e+02 Score=28.59 Aligned_cols=63 Identities=29% Similarity=0.318 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHH
Q 009584 130 IVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLR 192 (531)
Q Consensus 130 ~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~r 192 (531)
+.-..|-.+|+..+.-.....+-.|+.++.|+--|+--|+|++.....+.+++.||-+..+.+
T Consensus 81 s~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 81 SVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred HHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666776666666677788999999999999999999999888888888888777764
No 182
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=46.44 E-value=2.6e+02 Score=31.59 Aligned_cols=64 Identities=22% Similarity=0.360 Sum_probs=44.1
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 009584 48 DQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRER 122 (531)
Q Consensus 48 eq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ER 122 (531)
|.+..+ |..|-.++.+-|.++..|+++.+..+++-+.|.++ ...-..+|..+|+..+.+|..|+
T Consensus 55 DTP~DT---lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r--------~~~id~~i~~av~~~~~~~~~~~ 118 (472)
T TIGR03752 55 DTPADT---LRTLVAEVKELRKRLAKLISENEALKAENERLQKR--------EQSIDQQIQQAVQSETQELTKEI 118 (472)
T ss_pred CCccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhhHHHHHHHHHHhhhHHHHHHH
Confidence 445445 56777778888888888888888777777776543 22344677777777777776654
No 183
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=46.39 E-value=78 Score=35.84 Aligned_cols=14 Identities=14% Similarity=0.259 Sum_probs=8.9
Q ss_pred HHHHHhhHHHHHHh
Q 009584 86 EHFLRKVSEEKAAW 99 (531)
Q Consensus 86 e~l~KqlaEEK~aw 99 (531)
|.|=|||++|+-.+
T Consensus 545 eslekql~~ErklR 558 (641)
T KOG3915|consen 545 ESLEKQLAMERKLR 558 (641)
T ss_pred HHHHHHHHHHHHHH
Confidence 56677777775433
No 184
>PRK01156 chromosome segregation protein; Provisional
Probab=45.79 E-value=5.6e+02 Score=30.04 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLE 86 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie 86 (531)
+..+..++..-..+|.+|..+.....++++
T Consensus 471 i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~ 500 (895)
T PRK01156 471 INHYNEKKSRLEEKIREIEIEVKDIDEKIV 500 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555554444443333
No 185
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=45.55 E-value=4.2e+02 Score=28.51 Aligned_cols=108 Identities=19% Similarity=0.336 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 009584 56 MVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKL 135 (531)
Q Consensus 56 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL 135 (531)
++-.++.+|.+|+.+|+|+++-.+..+.++...+-+ |+-+..-|.-+..| =-=+|++++.++.|-
T Consensus 180 ~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~K------------qes~eERL~QlqsE---N~LLrQQLddA~~K~ 244 (305)
T PF14915_consen 180 ALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGK------------QESLEERLSQLQSE---NMLLRQQLDDAHNKA 244 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 345566666666667777666655555554444332 22222222211111 123577777777776
Q ss_pred H-HH--HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccH
Q 009584 136 V-NE--LADAKVSAKRYMQDYEKERKEREL-IEEVCDELAKEIGEDK 178 (531)
Q Consensus 136 ~-~E--Lae~Kss~~~a~kelE~ERkaRel-lE~vCdELAkeI~edk 178 (531)
- +| +.++.--|...++.|--+...+.+ ||+=-.||..+....+
T Consensus 245 ~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~Lk 291 (305)
T PF14915_consen 245 DNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLK 291 (305)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3 44 667777777777776555554444 5555555555544433
No 186
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=45.28 E-value=3.2e+02 Score=27.09 Aligned_cols=94 Identities=19% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Q 009584 96 KAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKE--RKERELIEEVCDELAKE 173 (531)
Q Consensus 96 K~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~E--RkaRellE~vCdELAke 173 (531)
|..|+ +=..-+...=+.+...|+.=.+++..++.+-...-.+|.+++.-....+.+...+ .....++.++=.++.+-
T Consensus 72 k~~~~-pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~ 150 (204)
T PRK09174 72 RVILP-RIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKK 150 (204)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhccHHHHHHHHHhhHH
Q 009584 174 IGEDKAEVEALKRESMK 190 (531)
Q Consensus 174 I~edkaEVe~lKres~k 190 (531)
+.+-+++++..|.+...
T Consensus 151 l~~Ae~~I~~ek~~A~~ 167 (204)
T PRK09174 151 LKEAEARIAAIKAKAMA 167 (204)
T ss_pred HHHHHHHHHHHHHHHHH
No 187
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=44.96 E-value=5.2e+02 Score=29.45 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhH
Q 009584 66 QARTRIQELETERRSSKKKLEHFLRKVS 93 (531)
Q Consensus 66 ~Ar~rI~eL~~E~~s~k~eie~l~Kqla 93 (531)
..+.++.+|..+......+++.+-++|+
T Consensus 388 ~~~~~~~~~~~~~~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 388 ELQDAKSQLLKELRELEEELAEVDKKIS 415 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666666666666666653
No 188
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=44.91 E-value=7.2e+02 Score=31.07 Aligned_cols=217 Identities=20% Similarity=0.226 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 009584 54 VSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNS 133 (531)
Q Consensus 54 ~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~ 133 (531)
+++..-+..++..++++|+.|-.--.....++.+|.-.+.++|. +.....-...-+...++.=+..--.+|.-|.
T Consensus 473 ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elke-----Q~kt~~~qye~~~~k~eeLe~~l~~lE~ENa 547 (1195)
T KOG4643|consen 473 LSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKE-----QYKTCDIQYELLSNKLEELEELLGNLEEENA 547 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q ss_pred HHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhccHHHHHHHHHh----
Q 009584 134 KLVNELADAKV--------------------SAKRYMQDYEKERKERELIEEV--CDELAKEIGEDKAEVEALKRE---- 187 (531)
Q Consensus 134 KL~~ELae~Ks--------------------s~~~a~kelE~ERkaRellE~v--CdELAkeI~edkaEVe~lKre---- 187 (531)
-|-+++.-.+. -+++++.-|+..|+-++.||.- --+++-.=-.++.-|+.|++.
T Consensus 548 ~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~alrrhke~LE~e~mnQql~~d~~~~kr~ie~Lr~~~~kl 627 (1195)
T KOG4643|consen 548 HLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALNALRRHKEKLEEEIMNQQLFEDPIPLKRDIEWLRRKESKL 627 (1195)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCchhhhHHHHHHHHHhh
Q ss_pred -hHHHHhhhhhhHHHHHHHHhhHHHhhhhhhhhhhhhhHHhhHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHhhc
Q 009584 188 -SMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSRSINPDIQEMKEAEMLRQAAAS 266 (531)
Q Consensus 188 -s~k~reE~eeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~elE~FL~sk~~~~d~~~~r~a~~~rqs~~S 266 (531)
..|. +-..++.+=|--.. .--+=+|-||..-.+.|--++.++.-+...+.. .+...+..+.--..-+.++++.+
T Consensus 628 l~~Kk-dr~ree~kel~~ek-l~ve~l~e~l~~lp~~fkt~n~e~l~V~sn~lE---e~qr~~~~~sn~~~~l~q~~i~~ 702 (1195)
T KOG4643|consen 628 LKEKK-DRNREETKELMDEK-LQVEDLQEKLRELPLEFKTKNDEILMVGSNILE---ERQRLGGCKSNAEIDLLQVSIRN 702 (1195)
T ss_pred cchhH-HHHHHHHhhccccc-hhHHHHHHHHHhCchhhccccchhhhhhhhhhh---hhhhhccccccchHHHHHHHHhc
Q ss_pred cccccccccccCCC
Q 009584 267 VNIQEIKEFTYEPP 280 (531)
Q Consensus 267 v~~~~ike~sy~pp 280 (531)
+..++-.+.+=+|.
T Consensus 703 ~q~~~ele~teapt 716 (1195)
T KOG4643|consen 703 SQIQGELENTEAPT 716 (1195)
T ss_pred ccccchhhcCCCcc
No 189
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=44.73 E-value=8.8e+02 Score=32.01 Aligned_cols=42 Identities=29% Similarity=0.426 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH
Q 009584 56 MVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKA 97 (531)
Q Consensus 56 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~ 97 (531)
.|..|+.||.-....|.+|..+--..+..+...++.+..+++
T Consensus 1315 ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~ 1356 (1822)
T KOG4674|consen 1315 EISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKA 1356 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555544444444444444444443
No 190
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=44.34 E-value=2e+02 Score=26.51 Aligned_cols=79 Identities=22% Similarity=0.233 Sum_probs=53.7
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 009584 46 HLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNR 125 (531)
Q Consensus 46 leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~R 125 (531)
|-||+-+. +-.|+.++-.+-.+|-+|+.... +....+.++.+.+
T Consensus 22 L~Eq~EaE---~FELk~~vL~lE~rvleLel~~~--------------------------~~~~~~~~~~~~~------- 65 (108)
T PF14739_consen 22 LREQHEAE---KFELKNEVLRLENRVLELELHGD--------------------------KAAPQIADLRHRL------- 65 (108)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHhhcc--------------------------hhhHHHhhHHHHH-------
Confidence 56776544 67888888888888888877543 1122222222222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 126 QRIEIVNSKLVNELADAKVSAKRYMQDYEKERKER 160 (531)
Q Consensus 126 kr~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaR 160 (531)
.-++...++|+.|+.-.+..+...-++++.|....
T Consensus 66 ~~~~~~~~~l~~e~~~l~~~~~a~~k~~~~e~~k~ 100 (108)
T PF14739_consen 66 AEAQEDRQELQEEYVSLKKNYQALPKAFEAEVAKN 100 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 23445677899999999999999999998887654
No 191
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=44.32 E-value=3.6e+02 Score=27.36 Aligned_cols=103 Identities=24% Similarity=0.384 Sum_probs=52.3
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHH---------HHHHHHHHHHHHH-HHHHHHHHHhhhccHHHHHHHHHhhHHHHhhh
Q 009584 129 EIVNSKLVN---ELADAKVSAKRYM---------QDYEKERKERELI-EEVCDELAKEIGEDKAEVEALKRESMKLREEV 195 (531)
Q Consensus 129 E~ln~KL~~---ELae~Kss~~~a~---------kelE~ERkaRell-E~vCdELAkeI~edkaEVe~lKres~k~reE~ 195 (531)
+.+..|++. ||++.+..+..+. .+.+ +-+++..- ...-+.|-.++..+++|+...++..+......
T Consensus 83 ~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~d-eak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~F 161 (202)
T PF06818_consen 83 ELLREKLGQLEAELAELREELACAGRLKRQCQLLSESD-EAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSF 161 (202)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccc-hhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 445555554 6777666666650 1111 11222211 33445555666666666666666666666666
Q ss_pred hhhHHHHHHHHhhHHHhhhhhhhhhhhhhHHhhHHHHHHHHHHHH
Q 009584 196 DDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEA 240 (531)
Q Consensus 196 eeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~elE~ 240 (531)
+.||+ +|.||.=. .+-=.-+|...|-+|=+=-..||.
T Consensus 162 e~ER~------~W~eEKek--Vi~YQkQLQ~nYvqMy~rn~~LE~ 198 (202)
T PF06818_consen 162 EQERR------TWQEEKEK--VIRYQKQLQQNYVQMYQRNQALER 198 (202)
T ss_pred HHHHH------HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77775 58887532 223333445555555444444443
No 192
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=44.24 E-value=2.7e+02 Score=31.91 Aligned_cols=94 Identities=17% Similarity=0.292 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHh
Q 009584 128 IEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEV 207 (531)
Q Consensus 128 ~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~reE~eeER~MLqmAEv 207 (531)
++.+=.+|.+||+.++.+.-+++- +.+.+...+++.+ |+.-.++.+...-+..... .+.+|.+
T Consensus 3 ad~~~~~L~~eL~~le~~ni~~l~--~s~~~v~~l~~~l-d~a~~e~d~le~~l~~y~~-------------~L~~~~~- 65 (701)
T PF09763_consen 3 ADAFEERLSKELSALEAANIHSLL--ESEKQVNSLMEYL-DEALAECDELESWLSLYDV-------------ELNSVRD- 65 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-------------HHHHHHH-
Confidence 567788999999999999988874 4455555555555 3333333333333332222 2222222
Q ss_pred hHHHhhhhhhhhhhh-hhHHhhHHHHHHHHHHHHHHhh
Q 009584 208 WREERVQMKLVDAKV-AVEQKYSQMNKLVAELEAFLSS 244 (531)
Q Consensus 208 WREERVQMKL~dAk~-~leeK~s~ldkL~~elE~FL~s 244 (531)
+|..++.+. .|+-+.+=-..|..||+.+|.+
T Consensus 66 ------di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~ 97 (701)
T PF09763_consen 66 ------DIEYIESQNNGLQVQSANQKLLLNELENLLDT 97 (701)
T ss_pred ------HHHHHHhhcCchhhHHHHHHHHHHHHHHHHHh
Confidence 344444444 3333444445577777777665
No 193
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=44.20 E-value=7.1e+02 Score=30.81 Aligned_cols=74 Identities=20% Similarity=0.178 Sum_probs=40.4
Q ss_pred CChHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Q 009584 32 KTPAEVRQIYSHMKHLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFI 111 (531)
Q Consensus 32 kts~el~~v~~~~~leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i 111 (531)
+|..+++..|+|.|++-.. +-.++.+=|--.+....+. +-+-.+--+++++++.-..-..+--|.+..++
T Consensus 713 ~~~~~vl~~Lara~y~~~~-----~~eak~~ll~a~~~~p~~~-----~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~ 782 (1018)
T KOG2002|consen 713 KNRSEVLHYLARAWYEAGK-----LQEAKEALLKARHLAPSNT-----SVKFNLALVLKKLAESILRLEKRTLEEVLEAV 782 (1018)
T ss_pred cCCHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHhCCccc-----hHHhHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 4567888999999855333 2222222222222222221 24455666777777776665555666666666
Q ss_pred HHHH
Q 009584 112 DDLK 115 (531)
Q Consensus 112 ~slk 115 (531)
+.++
T Consensus 783 ~~le 786 (1018)
T KOG2002|consen 783 KELE 786 (1018)
T ss_pred HHHH
Confidence 6443
No 194
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=43.80 E-value=1.5e+02 Score=26.74 Aligned_cols=63 Identities=27% Similarity=0.441 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 009584 63 EVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADA 142 (531)
Q Consensus 63 EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~ 142 (531)
+|...+.+..++++++.....+|+.|-..|-+|-- .+| ..+|+.|-.+|.-|..|.+.|.++
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN-----------~MV-------a~ar~e~~~~e~k~~~le~~l~e~ 63 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEAN-----------KMV-------ADARRERAALEEKNEQLEKQLKEK 63 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH-------HHHHHHHHHHHHHHHHHHHCTTHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888899999999999999998877622 122 567888888888888888887664
Q ss_pred H
Q 009584 143 K 143 (531)
Q Consensus 143 K 143 (531)
.
T Consensus 64 ~ 64 (100)
T PF06428_consen 64 E 64 (100)
T ss_dssp C
T ss_pred H
Confidence 4
No 195
>PRK12704 phosphodiesterase; Provisional
Probab=43.76 E-value=5.3e+02 Score=29.16 Aligned_cols=13 Identities=23% Similarity=0.353 Sum_probs=5.1
Q ss_pred ccccccccccccc
Q 009584 486 PHVTRGMKGCIEW 498 (531)
Q Consensus 486 phv~RgmkGciEw 498 (531)
+|..-|..=|-.|
T Consensus 381 ~H~~iGa~il~~~ 393 (520)
T PRK12704 381 SHVEIGAELAKKY 393 (520)
T ss_pred CHHHHHHHHHHHc
Confidence 3444444333333
No 196
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=43.72 E-value=2e+02 Score=24.29 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=23.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 122 RKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKER 157 (531)
Q Consensus 122 Rk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ER 157 (531)
+-.-+..-....||.+++..+-..|.++.+.+..-.
T Consensus 63 ~~~~~~~k~~~~KL~~df~~~l~~fq~~q~~~~~~~ 98 (102)
T PF14523_consen 63 RSNDRQQKLQREKLSRDFKEALQEFQKAQRRYAEKE 98 (102)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444455667888888888888888777765433
No 197
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=43.18 E-value=5.1e+02 Score=28.84 Aligned_cols=18 Identities=28% Similarity=0.470 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009584 61 EAEVEQARTRIQELETER 78 (531)
Q Consensus 61 k~EL~~Ar~rI~eL~~E~ 78 (531)
..-+.+|+.+|..|.++.
T Consensus 250 ~~~i~~a~~~i~~L~~~l 267 (582)
T PF09731_consen 250 NSLIAHAKERIDALQKEL 267 (582)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555554433
No 198
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=42.73 E-value=2.6e+02 Score=27.73 Aligned_cols=57 Identities=25% Similarity=0.406 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 103 EHEKIRAFIDDLKAEISRERKNRQR--------IEIVNSKLVNELADAKVSAKRYMQDYEKERKE 159 (531)
Q Consensus 103 E~eki~a~i~slk~ELe~ERk~Rkr--------~E~ln~KL~~ELae~Kss~~~a~kelE~ERka 159 (531)
+--+.+|.|..++..|++.||.=++ .|.-=..|...+.++-..+..-++++|..+|.
T Consensus 43 ~aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~~Fe~~~K~l~~~i~~~~~~I~~~ik~~Ee~~k~ 107 (215)
T PF07083_consen 43 DAKKDRAELNKLKKAIDDKRKEIKKEYSKPIKEFEAKIKELIAPIDEASDKIDEQIKEFEEKEKE 107 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677778888888888875443 23333455566666666666666666665554
No 199
>PRK14151 heat shock protein GrpE; Provisional
Probab=42.54 E-value=3.4e+02 Score=26.58 Aligned_cols=48 Identities=10% Similarity=0.176 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhh
Q 009584 54 VSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRS 101 (531)
Q Consensus 54 ~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKs 101 (531)
.+.+..|+.++...+.++.+|...-.....+++.+.|+...|+...+.
T Consensus 19 ~~~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~ 66 (176)
T PRK14151 19 AAAGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHK 66 (176)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888887665566666777777766666554433
No 200
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=42.17 E-value=86 Score=28.87 Aligned_cols=50 Identities=24% Similarity=0.394 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEK 106 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~ek 106 (531)
+..|+.+|...+.++.+|...-.....+++.+.+++..++...+......
T Consensus 13 ~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~ 62 (165)
T PF01025_consen 13 IEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEK 62 (165)
T ss_dssp HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666666655555555566666666655555444433333
No 201
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=41.87 E-value=5.2e+02 Score=28.54 Aligned_cols=182 Identities=14% Similarity=0.178 Sum_probs=0.0
Q ss_pred cccccCCccCCCccccccccccCcCCCCChHHHHHhhhhcc------cccccchhhhHHHHHHHHHHH------------
Q 009584 5 FFCKLEPSFQFSNPAMEGATKWNPVCLKTPAEVRQIYSHMK------HLDQQVSAVSMVAALEAEVEQ------------ 66 (531)
Q Consensus 5 ~~~~~~~~~~~~~~~mE~ATKWd~~~lkts~el~~v~~~~~------leeq~~s~~Slv~aLk~EL~~------------ 66 (531)
+|+.+..-.| |..+-+..++|-.........+........ .+........+|..++.+|..
T Consensus 227 ~L~~l~~l~P-p~~t~~~v~eW~~~l~~l~~~~d~~~~~~~~~lr~~~E~~~~ec~~~ve~~k~~L~~~~~~~~eea~~l 305 (473)
T PF14643_consen 227 LLQSLCDLLP-PNLTKEKVEEWYASLNALNEQIDEYHQQCMEKLRALYEKICQECLALVEKLKQELLDWKACTEEEAEEL 305 (473)
T ss_pred HHHHhhcCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 009584 67 ARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSA 146 (531)
Q Consensus 67 Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~ 146 (531)
.-.+.-.+..++++.-.+.=..|.+.=|+.+.+-...-..+-..++.+..-.+.=+ ..+...+.-|-+.|...+..+
T Consensus 306 v~~~~~plv~~~q~~~e~~le~l~~~~E~~a~~~~~~~~~L~~f~~~~~~lwd~h~---~~l~~~e~~l~~~l~~~r~~~ 382 (473)
T PF14643_consen 306 VNPEFLPLVGELQSEFEEELEKLDKSFEELAKQTEAQSEDLFKFFQEAAQLWDEHR---KKLSKQEEELEKRLEQCREKH 382 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhh
Q 009584 147 KRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDE 198 (531)
Q Consensus 147 ~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~reE~eeE 198 (531)
....+++|.. |...||.|...-. +.++.....++....+.++.+
T Consensus 383 ~~~~q~~E~~------Ld~~~d~lRq~s~--ee~L~~~l~~~~~~Ld~Ie~~ 426 (473)
T PF14643_consen 383 DQENQEKEAK------LDIALDRLRQASS--EEKLKEHLEKALDLLDQIEEE 426 (473)
T ss_pred HHHHHHHHHH------HHHHHHHHHhCCC--HHHHHHHHHHHHHHHHHHHHH
No 202
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=41.57 E-value=4.9e+02 Score=28.18 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=10.7
Q ss_pred hhhhhhhhhhhHHhhHHHHH
Q 009584 214 QMKLVDAKVAVEQKYSQMNK 233 (531)
Q Consensus 214 QMKL~dAk~~leeK~s~ldk 233 (531)
+-+|..|+..++.-...++.
T Consensus 297 ~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 297 NQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 44455666655554445544
No 203
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=41.39 E-value=3e+02 Score=25.71 Aligned_cols=38 Identities=29% Similarity=0.403 Sum_probs=17.4
Q ss_pred HHHHHHhhhccHHHHHHHHHhh-HHHHhhhhhhHHHHHHHH
Q 009584 167 CDELAKEIGEDKAEVEALKRES-MKLREEVDDERKMLQMAE 206 (531)
Q Consensus 167 CdELAkeI~edkaEVe~lKres-~k~reE~eeER~MLqmAE 206 (531)
-..++..+...++....|+.+. ..++. +-|-.|+-|++
T Consensus 57 ~~~~~~~~~~l~~~~~kl~~E~~~~~q~--EldDLL~ll~D 95 (136)
T PF04871_consen 57 LEELASEVKELEAEKEKLKEEARKEAQS--ELDDLLVLLGD 95 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHh
Confidence 3444444444555555555442 12222 33455666665
No 204
>PLN03188 kinesin-12 family protein; Provisional
Probab=40.79 E-value=8.8e+02 Score=30.92 Aligned_cols=93 Identities=29% Similarity=0.397 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Q 009584 108 RAFIDDLKAEISRERKNRQRIEI-------VNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKE------- 173 (531)
Q Consensus 108 ~a~i~slk~ELe~ERk~Rkr~E~-------ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAke------- 173 (531)
+.-...++-||+-|++.-..+.- =|.|+..--+|.. -++.+=|++-|+-++-|.+|=..-||.
T Consensus 1078 r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~---ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~ 1154 (1320)
T PLN03188 1078 RALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLE---EKHIQLLARHRRIQEGIDDVKKAAARAGVRGAES 1154 (1320)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 34445567778777764332221 2334443333333 244555677777777777777666653
Q ss_pred --hhccHHHHHHHHHhhHHHHhhhhhhHHHHH
Q 009584 174 --IGEDKAEVEALKRESMKLREEVDDERKMLQ 203 (531)
Q Consensus 174 --I~edkaEVe~lKres~k~reE~eeER~MLq 203 (531)
|.-.-||+-+||-+-+|-|+=+.+|-+=||
T Consensus 1155 ~f~~alaae~s~l~~ereker~~~~~enk~l~ 1186 (1320)
T PLN03188 1155 KFINALAAEISALKVEREKERRYLRDENKSLQ 1186 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 445667777777654444444444444333
No 205
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=40.68 E-value=2.5e+02 Score=26.06 Aligned_cols=66 Identities=18% Similarity=0.222 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhc
Q 009584 111 IDDLKAEISRERKNRQRIEIV--NSKLVNELADAKVSAKRYMQDY-EKERKERELIEEVCDELAKEIGE 176 (531)
Q Consensus 111 i~slk~ELe~ERk~Rkr~E~l--n~KL~~ELae~Kss~~~a~kel-E~ERkaRellE~vCdELAkeI~e 176 (531)
|-.|-+||+.-.+-..+++.. |..++..+.+....+..+-+-+ .+--..+...|.+|..+++.|.+
T Consensus 69 vLALLDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~~~~~~~~~~~~e~~~~~~~~riaE 137 (139)
T PF13935_consen 69 VLALLDELERAQQRIAELEQECENEDIALDVQKLRVELEAAEKRIAAELAEQAEAYEGEIADYAKRIAE 137 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 344444555443333444433 4444333333333222222222 11123445666777777665554
No 206
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=40.59 E-value=5.8e+02 Score=28.78 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=21.1
Q ss_pred hhhhHHHHHHHHhhHHHhhhhhhhhhhhhhHHh
Q 009584 195 VDDERKMLQMAEVWREERVQMKLVDAKVAVEQK 227 (531)
Q Consensus 195 ~eeER~MLqmAEvWREERVQMKL~dAk~~leeK 227 (531)
++.+-.|+-+-|.-|+=|.+-.|+.|..+|.-|
T Consensus 107 ~e~~n~~~~l~~~~~~~r~~e~la~~~~~l~~~ 139 (459)
T KOG0288|consen 107 AEFENAELALREMRRKMRIAERLAEALKDLGLK 139 (459)
T ss_pred hhhccchhhHHHHHHHHHHHHHHHHHhhhcchh
Confidence 456666776666666666666777666555443
No 207
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=40.59 E-value=8.1e+02 Score=30.43 Aligned_cols=66 Identities=30% Similarity=0.247 Sum_probs=38.3
Q ss_pred ccHHHHHHHHHhhHH-HHhhhhhhHHHHHHHHhhHHHhhhhhhhhhhhhhHHhhHHHHHHHHHHHHHHhh
Q 009584 176 EDKAEVEALKRESMK-LREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSS 244 (531)
Q Consensus 176 edkaEVe~lKres~k-~reE~eeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~elE~FL~s 244 (531)
-||+|.+++|+|... .-.|+=+||+=|-++-.=|.|+.+-+-.+...+|.+--. +|..|++.....
T Consensus 1113 kdK~e~er~~rE~n~s~i~~~V~e~krL~~~~~k~~e~L~k~~~~~leql~e~~k---al~~e~~~~~e~ 1179 (1189)
T KOG1265|consen 1113 KDKAERERRKRELNSSNIKEFVEERKRLAEKQSKRQEQLVKKHLEVLEQLAEEEK---ALDAEAEQEYEE 1179 (1189)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHH
Confidence 356777777776332 235555666666677666777766666666665555322 255555555444
No 208
>PRK00106 hypothetical protein; Provisional
Probab=39.58 E-value=6.3e+02 Score=28.91 Aligned_cols=9 Identities=33% Similarity=0.615 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 009584 114 LKAEISRER 122 (531)
Q Consensus 114 lk~ELe~ER 122 (531)
+..++..||
T Consensus 88 lEkel~eEr 96 (535)
T PRK00106 88 IEQEFKSER 96 (535)
T ss_pred HHHHHHHHH
Confidence 334444444
No 209
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=39.41 E-value=4.3e+02 Score=26.85 Aligned_cols=83 Identities=19% Similarity=0.302 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHH
Q 009584 102 REHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEV 181 (531)
Q Consensus 102 kE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEV 181 (531)
.+-+.+...++.++...+.-...|..+..+-..++.++.........+.+.+.+.-+ .+...|-.++....+.-.+|
T Consensus 68 ~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~---~l~~~~~k~~~~l~~l~~~v 144 (256)
T PF14932_consen 68 EDLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQK---ELSAECSKLNNELNQLLGEV 144 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 345677777787877777777777777777777777777776666556555544333 37777777777766665555
Q ss_pred HHHHHh
Q 009584 182 EALKRE 187 (531)
Q Consensus 182 e~lKre 187 (531)
..+-.+
T Consensus 145 ~~l~~~ 150 (256)
T PF14932_consen 145 SKLASE 150 (256)
T ss_pred HHHHHH
Confidence 554443
No 210
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=39.24 E-value=3.6e+02 Score=26.03 Aligned_cols=47 Identities=26% Similarity=0.239 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREH 104 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~ 104 (531)
|++| ..|+-+.++-++...|-...+.+.+.|..+...+|...+..|.
T Consensus 32 V~vL-E~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~ 78 (158)
T PF09744_consen 32 VRVL-ELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEE 78 (158)
T ss_pred HHHH-HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 5677777666666666666777777888877777777666553
No 211
>PRK14147 heat shock protein GrpE; Provisional
Probab=39.08 E-value=2.1e+02 Score=27.84 Aligned_cols=67 Identities=24% Similarity=0.310 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLV 136 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 136 (531)
...|..+|...+.++.+|...-.+..-+++.+.|+...|+...+ ...+.+++
T Consensus 20 ~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~----------------------------~~a~~~~~ 71 (172)
T PRK14147 20 TDPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQAR----------------------------KFANEKLL 71 (172)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHH
Confidence 45577778777888887766555666666666666555543221 23446778
Q ss_pred HHHHHHHHHHHHHHH
Q 009584 137 NELADAKVSAKRYMQ 151 (531)
Q Consensus 137 ~ELae~Kss~~~a~k 151 (531)
++|..+--.|.+|+.
T Consensus 72 ~~lLpv~DnlerAl~ 86 (172)
T PRK14147 72 GELLPVFDSLDAGLT 86 (172)
T ss_pred HHHhhhhhHHHHHHh
Confidence 888777766666653
No 212
>PF09636 XkdW: XkdW protein; InterPro: IPR019094 This entry includes the phage SPbeta protein YorD, the function of which is not known, It also contains the protein XkdW (P54342 from SWISSPROT) from the Phage-like element PBSX in Bacillus subtilis. XkdW is approximately 100 residues long and contains two alpha helices and two beta strands, and is probably monomeric. XkdW is expressed in bacteria but is probably viral in origin. Its function is unknown. PBSX, a defective prophage of B. subtilis, is a chromosomally based element which encodes a non-infectious phage-like particle with bactericidal activity. PBSX is induced by agents which elicit the SOS response [].; PDB: 2HG7_A.
Probab=37.99 E-value=11 Score=34.64 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 009584 110 FIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKR 148 (531)
Q Consensus 110 ~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~ 148 (531)
.++.+..+|..|+=.|+.+|.++.-|++||+.+|..+-.
T Consensus 66 qle~L~qeLaqekl~rkqle~~~~~Lg~ela~~kLe~l~ 104 (108)
T PF09636_consen 66 QLELLGQELAQEKLARKQLEELINNLGNELANLKLELLS 104 (108)
T ss_dssp ---------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677899999999999999999999999999876543
No 213
>PRK14162 heat shock protein GrpE; Provisional
Probab=37.88 E-value=4.3e+02 Score=26.42 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhh
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSR 102 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKsk 102 (531)
+..|+.+|...+.++.+|...-.+...+.+.+.|+...|+...+.-
T Consensus 41 ~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~ 86 (194)
T PRK14162 41 VEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKY 86 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888887666666667777777666665544333
No 214
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=37.87 E-value=4.3e+02 Score=26.40 Aligned_cols=15 Identities=7% Similarity=0.264 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhcccc
Q 009584 255 KEAEMLRQAAASVNI 269 (531)
Q Consensus 255 r~a~~~rqs~~Sv~~ 269 (531)
.-.+.++++++++++
T Consensus 222 ~~~e~~~~~~~~id~ 236 (261)
T cd07648 222 QVHEEFKRQVDELTV 236 (261)
T ss_pred HHHHHHHHHHHhCCH
Confidence 345678888888854
No 215
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=37.62 E-value=3.4e+02 Score=25.19 Aligned_cols=25 Identities=48% Similarity=0.555 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 009584 53 AVSMVAALEAEVEQARTRIQELETE 77 (531)
Q Consensus 53 ~~Slv~aLk~EL~~Ar~rI~eL~~E 77 (531)
|-..|-||--||++++.+|.+|.++
T Consensus 65 nP~tvLALLDElE~~~~~i~~~~~~ 89 (139)
T PF13935_consen 65 NPATVLALLDELERAQQRIAELEQE 89 (139)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566889999999999999999987
No 216
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=37.42 E-value=3e+02 Score=24.59 Aligned_cols=10 Identities=40% Similarity=0.720 Sum_probs=3.6
Q ss_pred HHHHHHHHHh
Q 009584 164 EEVCDELAKE 173 (531)
Q Consensus 164 E~vCdELAke 173 (531)
+++-+.|...
T Consensus 136 ~~~~~~l~~~ 145 (202)
T PF01442_consen 136 EELSEELTER 145 (202)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhHhhh
Confidence 3333333333
No 217
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=37.12 E-value=1.1e+02 Score=32.67 Aligned_cols=56 Identities=21% Similarity=0.437 Sum_probs=0.0
Q ss_pred HHHHhhhccHHHHHHHHHhhHHHHhhh-hhhHHHHHHHHhhHHHhhhhhhhhhhhhhHHhhHHHHHHHHHHHH
Q 009584 169 ELAKEIGEDKAEVEALKRESMKLREEV-DDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEA 240 (531)
Q Consensus 169 ELAkeI~edkaEVe~lKres~k~reE~-eeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~elE~ 240 (531)
|--..+-+-+.||++||....+|||.+ |||=. -+||+++|-|-...+.+|+.=|||
T Consensus 79 es~~~l~dRetEI~eLksQL~RMrEDWIEEECH----------------RVEAQLALKEARkEIkQLkQvieT 135 (305)
T PF15290_consen 79 ESENRLHDRETEIDELKSQLARMREDWIEEECH----------------RVEAQLALKEARKEIKQLKQVIET 135 (305)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHH
No 218
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=36.80 E-value=2.9e+02 Score=24.17 Aligned_cols=47 Identities=15% Similarity=0.284 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH
Q 009584 134 KLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAE 180 (531)
Q Consensus 134 KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaE 180 (531)
.|..++..+..--++.-++|.+-...-.-+|.+|.|+.+.+..--..
T Consensus 36 ~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~ 82 (89)
T PF13747_consen 36 ELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIET 82 (89)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444555555555677899999998887654333
No 219
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=36.58 E-value=1.1e+02 Score=30.18 Aligned_cols=32 Identities=38% Similarity=0.649 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHhhHHHHhhh
Q 009584 164 EEVCDELAKEIGEDKAEVEALKRESMKLREEV 195 (531)
Q Consensus 164 E~vCdELAkeI~edkaEVe~lKres~k~reE~ 195 (531)
++.|.|+++.-+...++...+-++-.+++.++
T Consensus 116 ~N~C~e~~~~~~~~~~~~~~~~~~G~~~r~~~ 147 (176)
T PF12999_consen 116 PNTCAELGKEYREELEEEEEIYKEGLKIRQEL 147 (176)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888777666666555555544444333
No 220
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=36.56 E-value=2.6e+02 Score=23.54 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 009584 54 VSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNS 133 (531)
Q Consensus 54 ~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~ 133 (531)
-+++..|.-.|+....+|++|.+-|..-...|+.+-..|.+-... +.+.+.+.-.. =...=...|+++..+|.
T Consensus 6 ~Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~------~~~~~~~~~~~-y~~KL~~ikkrm~~l~~ 78 (92)
T PF14712_consen 6 EGLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEV------EQINEPFDLDP-YVKKLVNIKKRMSNLHE 78 (92)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhhhHHHhhH-HHHHHHHHHHHHHHHHH
Confidence 467888999999999999999998888888877777776654331 22221221111 11222357888888888
Q ss_pred HH
Q 009584 134 KL 135 (531)
Q Consensus 134 KL 135 (531)
++
T Consensus 79 ~l 80 (92)
T PF14712_consen 79 RL 80 (92)
T ss_pred HH
Confidence 87
No 221
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=36.54 E-value=5e+02 Score=26.85 Aligned_cols=124 Identities=20% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLV 136 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 136 (531)
+-+++.|+.--..+|..++.+-+..+..++..-.++ .++-..+|...+...++.++..+..=+.-=.++.-.-.+|.
T Consensus 47 ~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl---~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 47 LEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL---SAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLE 123 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH
Q 009584 137 NELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEA 183 (531)
Q Consensus 137 ~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~ 183 (531)
.++.+.+..+.+.-+++...+.+=+.--..-++=-.++..-++++.+
T Consensus 124 ~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~ 170 (239)
T COG1579 124 KEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKE 170 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 222
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=36.44 E-value=4.8e+02 Score=26.61 Aligned_cols=81 Identities=10% Similarity=0.154 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 009584 54 VSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSR-EHEKIRAFIDDLKAEISRERKNRQRIEIVN 132 (531)
Q Consensus 54 ~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKsk-E~eki~a~i~slk~ELe~ERk~Rkr~E~ln 132 (531)
+.++.+.|.=|..=..-.+++.+-++..+ .|+...+|.-++++ -.+|+..|+++|.+-=..|.-+.++.+.+-
T Consensus 111 ~~~~~~vKealtnR~~~~re~~qAq~~~~------~K~~~~~rlk~s~~i~~~KvdeA~~~l~eA~~~e~~l~~k~~rIs 184 (230)
T cd07625 111 SRDAYVVKEALTNRHLLMRELIQAQQNTK------SKQEAARRLKAKRDINPLKVDEAIRQLEEATKHEHDLSLKLKRIT 184 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555556665555544 46777777766554 257999999999887778888888888888
Q ss_pred HHHHHHHH
Q 009584 133 SKLVNELA 140 (531)
Q Consensus 133 ~KL~~ELa 140 (531)
.-|-.|+.
T Consensus 185 ~nm~~E~~ 192 (230)
T cd07625 185 GNMLIERK 192 (230)
T ss_pred HHHHHHHH
Confidence 77777764
No 223
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=36.33 E-value=4.7e+02 Score=26.41 Aligned_cols=28 Identities=32% Similarity=0.648 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009584 148 RYMQDYEKERKERELIEEVCDELAKEIG 175 (531)
Q Consensus 148 ~a~kelE~ERkaRellE~vCdELAkeI~ 175 (531)
..-..|+...+..+=|-.+||+|.-.+|
T Consensus 179 SLe~~LeQK~kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 179 SLEESLEQKTKENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344667777777788899999977654
No 224
>PRK14153 heat shock protein GrpE; Provisional
Probab=35.75 E-value=4.6e+02 Score=26.21 Aligned_cols=41 Identities=17% Similarity=0.333 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKA 97 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~ 97 (531)
+.++..+++..+.++.+|...-.....+++.+.|+...|+.
T Consensus 35 ~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e 75 (194)
T PRK14153 35 DSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREME 75 (194)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777765555555566666665555543
No 225
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=35.64 E-value=7.2e+02 Score=28.37 Aligned_cols=64 Identities=23% Similarity=0.331 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH--HHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 009584 62 AEVEQARTRIQELETERRSSKKKLEHF--LRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNEL 139 (531)
Q Consensus 62 ~EL~~Ar~rI~eL~~E~~s~k~eie~l--~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~EL 139 (531)
++|..-+.....+++|..+.+.+...+ .+++.|.|+. +...-+..+..||.+|| -+|.+|.+.+
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~-------q~q~k~~k~~kel~~~~-------E~n~~l~knq 412 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQ-------QLQTKLKKCQKELKEER-------EENKKLIKNQ 412 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH-------HHHHHHHhhH
Confidence 566666777777777776655544443 3455555552 33444555666777776 5666666555
No 226
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=35.56 E-value=1e+03 Score=30.08 Aligned_cols=26 Identities=12% Similarity=0.378 Sum_probs=12.0
Q ss_pred HhhhhhhhhhhhhhHHhhHHHHHHHH
Q 009584 211 ERVQMKLVDAKVAVEQKYSQMNKLVA 236 (531)
Q Consensus 211 ERVQMKL~dAk~~leeK~s~ldkL~~ 236 (531)
+-|+.+|.+++..|++-...+..+..
T Consensus 924 eel~a~L~e~r~rL~~l~~el~~~~~ 949 (1353)
T TIGR02680 924 DEIRARLAETRAALASGGRELPRLAE 949 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555555544444444443333
No 227
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=35.52 E-value=8.3e+02 Score=29.09 Aligned_cols=127 Identities=24% Similarity=0.308 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH--HHHHHHH---hhHHHHHHhhhhHH--HHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 009584 59 ALEAEVEQARTRIQELETERRSSKK--KLEHFLR---KVSEEKAAWRSREH--EKIRAFIDDLKAEISRERKNRQRIEIV 131 (531)
Q Consensus 59 aLk~EL~~Ar~rI~eL~~E~~s~k~--eie~l~K---qlaEEK~awKskE~--eki~a~i~slk~ELe~ERk~Rkr~E~l 131 (531)
.+++|++..+.++..+.++.++-.. ..+..++ ++++.+-.-+.++. .-+.+-++.+-...+ .++..
T Consensus 397 ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~e-------d~Qeq 469 (698)
T KOG0978|consen 397 KARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFE-------DMQEQ 469 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 4667777777787777777666555 5556666 44444433332221 111222333333333 36778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHH
Q 009584 132 NSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLR 192 (531)
Q Consensus 132 n~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~r 192 (531)
|.||.-||.+.--.--++|.+..+-...-.++.+-=+.|...|-.+++-+..+.....++.
T Consensus 470 n~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~le 530 (698)
T KOG0978|consen 470 NQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLE 530 (698)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877777777777777777666666666677666666666666555555443
No 228
>PRK14155 heat shock protein GrpE; Provisional
Probab=35.40 E-value=2.4e+02 Score=28.33 Aligned_cols=67 Identities=15% Similarity=0.146 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 009584 58 AALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVN 137 (531)
Q Consensus 58 ~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ 137 (531)
..|..+|+..+.++.+|...-.+..-+++.+.|+...|+.. -..-...++++
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~----------------------------~~~~a~~~~~~ 67 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMND----------------------------ARAYAIQKFAR 67 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHH
Confidence 45666666666666666555555555555555544444321 12335667888
Q ss_pred HHHHHHHHHHHHHHH
Q 009584 138 ELADAKVSAKRYMQD 152 (531)
Q Consensus 138 ELae~Kss~~~a~ke 152 (531)
+|..+--.|.+|+.-
T Consensus 68 ~LLpV~DnLerAl~~ 82 (208)
T PRK14155 68 DLLGAADNLGRATAA 82 (208)
T ss_pred HHhhHHhhHHHHHhc
Confidence 888887777777654
No 229
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=35.34 E-value=8.8e+02 Score=29.32 Aligned_cols=66 Identities=17% Similarity=0.212 Sum_probs=31.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH--------HHhhh---hHHHHHHHHH
Q 009584 71 IQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRE--------RKNRQ---RIEIVNSKLV 136 (531)
Q Consensus 71 I~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~E--------Rk~Rk---r~E~ln~KL~ 136 (531)
|+-+.+||...++++..|.+-++.--..=-=+|.+-+-++|.+=-++|..+ ||+|- -.|.|-.|++
T Consensus 418 vqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~g 494 (961)
T KOG4673|consen 418 VQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKG 494 (961)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhh
Confidence 444455666666665555444443222112234555555555544445443 45553 3454445544
No 230
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=35.31 E-value=1.9e+02 Score=33.80 Aligned_cols=50 Identities=28% Similarity=0.299 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhh
Q 009584 136 VNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEV 195 (531)
Q Consensus 136 ~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~reE~ 195 (531)
.+|+..++++++--+.++|--|. ||--+|.++...+|+||+...+.+-|+
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krq----------el~seI~~~n~kiEelk~~i~~~q~eL 130 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQ----------ELNSEIEEINTKIEELKRLIPQKQLEL 130 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHhHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44455555555555555555443 455566666666677766655444333
No 231
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=35.15 E-value=3.1e+02 Score=24.08 Aligned_cols=108 Identities=19% Similarity=0.263 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 009584 60 LEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNEL 139 (531)
Q Consensus 60 Lk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~EL 139 (531)
+...|+.-+..+..+...-.....+++.--.+|.+.......==++ ..+-........+.|++.+...+.-=.+|..+|
T Consensus 12 ~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flke-n~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l 90 (126)
T PF13863_consen 12 VQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKE-NEAKRERAEKRAEEEKKKKEEKEAEIKKLKAEL 90 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544444444444444444433221110000 001111123356778888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 140 ADAKVSAKRYMQDYEKERKERELIEEVCD 168 (531)
Q Consensus 140 ae~Kss~~~a~kelE~ERkaRellE~vCd 168 (531)
..+++-..+.-..++.=..=...|+.|.+
T Consensus 91 ~~l~~~~~k~e~~l~~~~~Y~~fL~~v~~ 119 (126)
T PF13863_consen 91 EELKSEISKLEEKLEEYKKYEEFLEKVVP 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99998888888888888887888877765
No 232
>PRK04654 sec-independent translocase; Provisional
Probab=34.96 E-value=2.8e+02 Score=28.37 Aligned_cols=30 Identities=13% Similarity=-0.017 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 129 EIVNSKLVNELADAKVSAKRYMQDYEKERK 158 (531)
Q Consensus 129 E~ln~KL~~ELae~Kss~~~a~kelE~ERk 158 (531)
=.+=|.|++=+..+|..+..+..++++|-+
T Consensus 26 Pe~aRtlGk~irk~R~~~~~vk~El~~El~ 55 (214)
T PRK04654 26 PKAARFAGLWVRRARMQWDSVKQELERELE 55 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344556666666666666666666666654
No 233
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.94 E-value=4.9e+02 Score=30.49 Aligned_cols=57 Identities=32% Similarity=0.367 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHH
Q 009584 150 MQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAE 206 (531)
Q Consensus 150 ~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~reE~eeER~MLqmAE 206 (531)
+|+|-.-+..|+.+++....||+.|.+.+..-+.|-+...+++--.--+...|-+||
T Consensus 601 lQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AE 657 (741)
T KOG4460|consen 601 LQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAE 657 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHH
Confidence 344444455667888999999999988877777777777776543333444444443
No 234
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=34.84 E-value=1.8e+02 Score=27.71 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=15.4
Q ss_pred hhhccHHHHHHHHHhhHHHHhhh
Q 009584 173 EIGEDKAEVEALKRESMKLREEV 195 (531)
Q Consensus 173 eI~edkaEVe~lKres~k~reE~ 195 (531)
++..-+.++++||.++.....|.
T Consensus 169 el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 169 ELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 33346777888888877765554
No 235
>PLN02372 violaxanthin de-epoxidase
Probab=34.78 E-value=4.9e+02 Score=29.31 Aligned_cols=51 Identities=22% Similarity=0.408 Sum_probs=38.0
Q ss_pred HHHHHHH-HHHhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 114 LKAEISR-ERKNRQRIEIVNSK--LVNELADAKVSAKRYMQDYEKERKERELIEEV 166 (531)
Q Consensus 114 lk~ELe~-ERk~Rkr~E~ln~K--L~~ELae~Kss~~~a~kelE~ERkaRellE~v 166 (531)
+..||+. -+++++..+.+=.+ |+.-|.+++.-..+++++|-+|-+ ++++++
T Consensus 384 ~~~e~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~lskee~--~~l~~~ 437 (455)
T PLN02372 384 IEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEEK--ELLEKL 437 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHH
Confidence 4455554 46788888889999 999999999999999998776544 444433
No 236
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=33.69 E-value=1.6e+02 Score=23.48 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 009584 55 SMVAALEAEVEQARTRIQELETERRSSKKKLEHF 88 (531)
Q Consensus 55 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l 88 (531)
.-+..++.++...+.++.+|.++....+.+++.|
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3356677777777777777777777777776666
No 237
>PRK14161 heat shock protein GrpE; Provisional
Probab=33.14 E-value=3.4e+02 Score=26.65 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 009584 130 IVNSKLVNELADAKVSAKRYMQ 151 (531)
Q Consensus 130 ~ln~KL~~ELae~Kss~~~a~k 151 (531)
....+++++|-.+--.|.+|+.
T Consensus 66 ~a~~~~~~~LLpv~DnlerAl~ 87 (178)
T PRK14161 66 YAIATFAKELLNVSDNLSRALA 87 (178)
T ss_pred HHHHHHHHHHhhHHhHHHHHHh
Confidence 4567888888888777777754
No 238
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.65 E-value=2.9e+02 Score=30.93 Aligned_cols=122 Identities=24% Similarity=0.308 Sum_probs=78.4
Q ss_pred hhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH------HhhhhHHH--------
Q 009584 40 IYSHMKHLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKA------AWRSREHE-------- 105 (531)
Q Consensus 40 v~~~~~leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~------awKskE~e-------- 105 (531)
||-.-.++||.- +..|..||.+--+-|+..++|..+..-.-+.|.+.+..=.. +-+.+..+
T Consensus 33 vlke~viee~gk-----~~kl~eelk~k~a~irrieaendsl~frndql~rrvenfqfe~pt~~aa~k~~~~k~~~~~tq 107 (637)
T KOG4421|consen 33 VLKEAVIEEQGK-----EAKLREELKQKAASIRRIEAENDSLGFRNDQLERRVENFQFEIPTHEAAKKKDKDKGGRRGTQ 107 (637)
T ss_pred HHHHHHHHHhcc-----hhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHhccCCCCCccccccccccCCCCCCC
Confidence 444444555533 67899999999999999999998876555666666543110 11111111
Q ss_pred -----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH
Q 009584 106 -----KIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAE 180 (531)
Q Consensus 106 -----ki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaE 180 (531)
...+.|+.+..+|-.| +.-|.+|+-||+ |+||.--.-|-++...+|++.++.+.+
T Consensus 108 sdsaaaaaarid~~ee~l~~~-------~aq~erlvgeia-------------enerqhavemaelsekia~emr~lede 167 (637)
T KOG4421|consen 108 SDSAAAAAARIDAAEEALIFE-------EAQKERLVGEIA-------------ENERQHAVEMAELSEKIADEMRDLEDE 167 (637)
T ss_pred CCcccccccccchHHHHHHHH-------HHHhhHHHHHHH-------------hhhHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1234466666666544 456778888886 466776666777777888888887777
Q ss_pred HHHHHH
Q 009584 181 VEALKR 186 (531)
Q Consensus 181 Ve~lKr 186 (531)
++.|.-
T Consensus 168 ~~r~~m 173 (637)
T KOG4421|consen 168 TERIAM 173 (637)
T ss_pred HHHHHH
Confidence 776554
No 239
>PRK10884 SH3 domain-containing protein; Provisional
Probab=32.51 E-value=5.2e+02 Score=25.85 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 128 IEIVNSKLVNELADAKVSAKRYMQDYEKER 157 (531)
Q Consensus 128 ~E~ln~KL~~ELae~Kss~~~a~kelE~ER 157 (531)
++.-|.+|..||..++.-+..+-.+++..+
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888877766655544444433
No 240
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=32.31 E-value=56 Score=38.01 Aligned_cols=85 Identities=28% Similarity=0.412 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhh-------hhhHHHHHHH--------HhhHHH-hhhhhhhhhhhh-
Q 009584 161 ELIEEVCDELAKEIGEDKAEVEALKRESMKLREEV-------DDERKMLQMA--------EVWREE-RVQMKLVDAKVA- 223 (531)
Q Consensus 161 ellE~vCdELAkeI~edkaEVe~lKres~k~reE~-------eeER~MLqmA--------EvWREE-RVQMKL~dAk~~- 223 (531)
++.|+.-+.+++.|.+.+||+|.||.++.|..+.+ +-|+++=-.+ |.||=| |+-|--.+--..
T Consensus 360 ~~aeeF~kRV~~~ia~~~AEIekmK~~Hak~m~k~k~~s~lk~AE~~LR~a~~~p~~~G~E~WRlEGrl~~~~ee~~~~~ 439 (669)
T PF08549_consen 360 GKAEEFRKRVAKKIADMNAEIEKMKARHAKRMAKFKRNSLLKDAEKELRDAVEDPSETGPEIWRLEGRLDTPDEEDESPV 439 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCCccccCccceeecccccCCccCCCCcc
Confidence 45566667777788899999999999998876544 2333333333 378755 333211111111
Q ss_pred --hHHhh-HHHHHHHHHHHHHHhhc
Q 009584 224 --VEQKY-SQMNKLVAELEAFLSSR 245 (531)
Q Consensus 224 --leeK~-s~ldkL~~elE~FL~sk 245 (531)
.+.|. .-||....++|+=|..+
T Consensus 440 ~~~~~k~k~~VDDIV~eVE~slGrk 464 (669)
T PF08549_consen 440 EQSENKPKYKVDDIVAEVEKSLGRK 464 (669)
T ss_pred cccCccccccHHHHHHHHHHHhCCe
Confidence 11111 24899999999998876
No 241
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=32.28 E-value=4.1e+02 Score=24.61 Aligned_cols=68 Identities=24% Similarity=0.428 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIE 129 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E 129 (531)
+.+|..+|+..-..+.+|.+++.. +...+..|-.+..+.-.+ -.-+.+-|.++...|+.|+-.+-.++
T Consensus 18 La~Le~slE~~K~S~~eL~kqkd~----L~~~l~~L~~q~~s~~qr-~~eLqaki~ea~~~le~eK~ak~~l~ 85 (107)
T PF09304_consen 18 LASLERSLEDEKTSQGELAKQKDQ----LRNALQSLQAQNASRNQR-IAELQAKIDEARRNLEDEKQAKLELE 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHH----HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999775544 666666666666654332 34467777777777777665543443
No 242
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=31.52 E-value=6.4e+02 Score=26.56 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHH
Q 009584 55 SMVAALEAEVEQART 69 (531)
Q Consensus 55 Slv~aLk~EL~~Ar~ 69 (531)
.|+..|+.+++.++.
T Consensus 9 ~l~~~l~~~~~~~~~ 23 (314)
T PF04111_consen 9 LLLEQLDKQLEQAEK 23 (314)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 445666666655543
No 243
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=31.50 E-value=1.1e+03 Score=29.42 Aligned_cols=119 Identities=14% Similarity=0.232 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh-----hhhHH
Q 009584 55 SMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKN-----RQRIE 129 (531)
Q Consensus 55 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~-----Rkr~E 129 (531)
+....|++|+..-.+++..|++|..++.+..+-+-.|... ..++.+...+.++.+++.+..-|.. -++++
T Consensus 173 a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl-----~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~ 247 (1109)
T PRK10929 173 AQLTALQAESAALKALVDELELAQLSANNRQELARLRSEL-----AKKRSQQLDAYLQALRNQLNSQRQREAERALESTE 247 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466778888888889999999988877654444433322 2234445555555555555442211 01111
Q ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Q 009584 130 -----------------IVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALK 185 (531)
Q Consensus 130 -----------------~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lK 185 (531)
..|++|+.+|...-.- +..=.+....++..-+.+.+-....++.+..|+
T Consensus 248 ~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~-------~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~ 313 (1109)
T PRK10929 248 LLAEQSGDLPKSIVAQFKINRELSQALNQQAQR-------MDLIASQQRQAASQTLQVRQALNTLREQSQWLG 313 (1109)
T ss_pred HhHHhhccCChHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2466666666543332 222233444445555555555555555555544
No 244
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=31.00 E-value=4.3e+02 Score=26.95 Aligned_cols=11 Identities=55% Similarity=0.685 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 009584 154 EKERKERELIE 164 (531)
Q Consensus 154 E~ERkaRellE 164 (531)
+-+|+.=.++|
T Consensus 215 e~erk~l~~lE 225 (230)
T cd07625 215 EYERKKLSLLE 225 (230)
T ss_pred HHHHHHHHHHH
Confidence 33444433343
No 245
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=30.67 E-value=5.2e+02 Score=25.29 Aligned_cols=29 Identities=28% Similarity=0.476 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhHHHHH
Q 009584 69 TRIQELETERRSSKKKLEHFLRKVSEEKA 97 (531)
Q Consensus 69 ~rI~eL~~E~~s~k~eie~l~KqlaEEK~ 97 (531)
..+.+|.++....+.++..|-..+.+.+.
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~~~ 97 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEAKK 97 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444444444433
No 246
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.53 E-value=3.1e+02 Score=24.01 Aligned_cols=57 Identities=23% Similarity=0.522 Sum_probs=40.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH---HhhHHHHHHhhhhHHHHHHHHHH
Q 009584 52 SAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFL---RKVSEEKAAWRSREHEKIRAFID 112 (531)
Q Consensus 52 s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~---KqlaEEK~awKskE~eki~a~i~ 112 (531)
.++--|.-|++|.+.-.-.-+.|.+|.+..++..+.|. .||.+|-..| ++++++.+-
T Consensus 15 qAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~W----QerlrsLLG 74 (79)
T COG3074 15 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGW----QERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHh
Confidence 34555778888888877777778777776666555554 5788888888 466666554
No 247
>PRK14144 heat shock protein GrpE; Provisional
Probab=30.09 E-value=4.1e+02 Score=26.74 Aligned_cols=22 Identities=23% Similarity=0.151 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 009584 130 IVNSKLVNELADAKVSAKRYMQ 151 (531)
Q Consensus 130 ~ln~KL~~ELae~Kss~~~a~k 151 (531)
....+++++|..+--.|.+|+.
T Consensus 92 ~a~~~~~~~LLpV~DnLerAl~ 113 (199)
T PRK14144 92 YGVEKLISALLPVVDSLEQALQ 113 (199)
T ss_pred HHHHHHHHHHhhHHhHHHHHHH
Confidence 4567888888888877777765
No 248
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=29.86 E-value=7e+02 Score=26.47 Aligned_cols=126 Identities=19% Similarity=0.205 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 009584 54 VSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNS 133 (531)
Q Consensus 54 ~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~ 133 (531)
+.++.+|+..|+......+.=.+.-......++.++ ..++.-.+.|+.|+.. +|+..+-++.
T Consensus 139 ~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~---------------~~l~~~~~~L~~e~~~---L~~~~~e~~~ 200 (312)
T smart00787 139 MKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIK---------------PKLRDRKDALEEELRQ---LKQLEDELED 200 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHH---HHHhHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhh
Q 009584 134 KLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDD 197 (531)
Q Consensus 134 KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~reE~ee 197 (531)
-=..||..+|..++....+++.-++.-.-++.-=.++...|.+.+++..++..+...+..-+++
T Consensus 201 ~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~ 264 (312)
T smart00787 201 CDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264 (312)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 249
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=29.80 E-value=4.6e+02 Score=24.33 Aligned_cols=20 Identities=10% Similarity=0.280 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 009584 108 RAFIDDLKAEISRERKNRQR 127 (531)
Q Consensus 108 ~a~i~slk~ELe~ERk~Rkr 127 (531)
..-+..|..+|++++..+..
T Consensus 15 ~n~La~Le~slE~~K~S~~e 34 (107)
T PF09304_consen 15 QNRLASLERSLEDEKTSQGE 34 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHH
Confidence 33444455555555554443
No 250
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=29.71 E-value=1e+03 Score=28.30 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=13.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Q 009584 115 KAEISRERKNRQRIEIVNSKLVNELA 140 (531)
Q Consensus 115 k~ELe~ERk~Rkr~E~ln~KL~~ELa 140 (531)
++||+++...|-|+|.--.||-+|-.
T Consensus 645 Ree~eRl~~erlrle~qRQrLERErm 670 (940)
T KOG4661|consen 645 REELERLKAERLRLERQRQRLERERM 670 (940)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555543
No 251
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=29.48 E-value=9.2e+02 Score=27.73 Aligned_cols=17 Identities=24% Similarity=0.517 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhhhHH
Q 009584 67 ARTRIQELETERRSSKK 83 (531)
Q Consensus 67 Ar~rI~eL~~E~~s~k~ 83 (531)
-+..|++|+.|++..+-
T Consensus 89 l~~Kl~eLE~e~k~d~v 105 (508)
T PF00901_consen 89 LQRKLKELEDEQKEDEV 105 (508)
T ss_pred HHHHHHHHHHHHhhHHH
Confidence 46678888888876653
No 252
>PRK12704 phosphodiesterase; Provisional
Probab=29.30 E-value=8.8e+02 Score=27.45 Aligned_cols=13 Identities=23% Similarity=0.276 Sum_probs=5.4
Q ss_pred HHhhhhHHHHHHH
Q 009584 122 RKNRQRIEIVNSK 134 (531)
Q Consensus 122 Rk~Rkr~E~ln~K 134 (531)
+++-+|.+.|++|
T Consensus 89 ~rL~~Ree~Le~r 101 (520)
T PRK12704 89 KRLLQKEENLDRK 101 (520)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 253
>PRK14160 heat shock protein GrpE; Provisional
Probab=29.21 E-value=6.2e+02 Score=25.68 Aligned_cols=19 Identities=16% Similarity=0.122 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009584 132 NSKLVNELADAKVSAKRYM 150 (531)
Q Consensus 132 n~KL~~ELae~Kss~~~a~ 150 (531)
..++++.|-.+--.|.+|+
T Consensus 110 ~e~~~~~LLpVlDnLerAl 128 (211)
T PRK14160 110 CEDVLKELLPVLDNLERAA 128 (211)
T ss_pred HHHHHHHHhhHHhHHHHHH
Confidence 4455555555555555554
No 254
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=29.03 E-value=1.8e+02 Score=30.23 Aligned_cols=52 Identities=27% Similarity=0.497 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhh-hhHHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWR-SREHEKIR 108 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awK-skE~eki~ 108 (531)
+...+.|+.+....|..|..|......-.+..+++|.+++..|- +...+++.
T Consensus 48 ~~~~~k~~~~l~~~i~~L~~E~~~h~~~~~~v~~~L~~~k~~wf~~~~~~~i~ 100 (298)
T PF11262_consen 48 ISKKKKEKERLKNLIDKLPEELKKHQEHVEKVKKRLQEEKDSWFSSKDPEKIE 100 (298)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCChhhHH
Confidence 34566788888999999999999999999999999999999998 34445554
No 255
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=28.92 E-value=1.2e+02 Score=34.96 Aligned_cols=62 Identities=24% Similarity=0.396 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHH---------HHHHhhhhHHHHHHHHHHHHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSE---------EKAAWRSREHEKIRAFIDDLKAEI 118 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaE---------EK~awKskE~eki~a~i~slk~EL 118 (531)
+.++.+++..-+..|.+|..+......++..+-..+.. -+.+--.||.+-+++.|.+.-.|.
T Consensus 359 ~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~ 429 (722)
T PF05557_consen 359 LGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEE 429 (722)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33444444444444455544444444444443333322 223334577788888887765554
No 256
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=28.90 E-value=6.5e+02 Score=25.82 Aligned_cols=6 Identities=17% Similarity=0.684 Sum_probs=2.3
Q ss_pred HHHHHH
Q 009584 108 RAFIDD 113 (531)
Q Consensus 108 ~a~i~s 113 (531)
.+.|+.
T Consensus 125 ~~~l~~ 130 (297)
T PF02841_consen 125 QALLQE 130 (297)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333443
No 257
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=28.80 E-value=8.5e+02 Score=27.16 Aligned_cols=31 Identities=32% Similarity=0.561 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 009584 58 AALEAEVEQARTRIQELETERRSSKKKLEHF 88 (531)
Q Consensus 58 ~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l 88 (531)
.+|..|+..-..++.++.+|.+..+.+++.+
T Consensus 105 ~sl~~e~a~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 105 DSLSSELAVLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777776
No 258
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=27.90 E-value=6.5e+02 Score=25.52 Aligned_cols=135 Identities=20% Similarity=0.279 Sum_probs=67.7
Q ss_pred ChHHHHHhhhhcc--cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHH
Q 009584 33 TPAEVRQIYSHMK--HLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAF 110 (531)
Q Consensus 33 ts~el~~v~~~~~--leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~ 110 (531)
.++++..+|-+|. +..-...--...++|..|| |..|+..-....+.|..+-|.+.-|.-. ++.+-+|..+-
T Consensus 62 ~sk~lG~~L~~i~~~~r~ie~~l~~~~~~~~~~l------i~pLe~k~e~d~k~i~~~~K~y~~E~K~-~~~~l~K~~se 134 (223)
T cd07605 62 GSQELGEALKQIVDTHKSIEASLEQVAKAFHGEL------ILPLEKKLELDQKVINKFEKDYKKEYKQ-KREDLDKARSE 134 (223)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 5667777776664 1111112223345555554 4456666666677777777766555221 11122333222
Q ss_pred HHHHHHHHH------HHHHhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009584 111 IDDLKAEIS------RERKNRQRIEIVNSKLVNELAD-AKVSAKRYMQDYEKERKERELIEEVCDELAKEIGED 177 (531)
Q Consensus 111 i~slk~ELe------~ERk~Rkr~E~ln~KL~~ELae-~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~ed 177 (531)
+.-++..-. .+-+++.-+|.+|.|-. ||.+ .+.++..|| +|..||=.-+++..|-=+=.++.-.
T Consensus 135 l~Kl~KKs~~~~~~k~~~~l~~~~e~v~~k~~-ele~~~~~~lr~al--~EERrRyc~lv~~~c~v~~~e~~~~ 205 (223)
T cd07605 135 LKKLQKKSQKSGTGKYQEKLDQALEELNDKQK-ELEAFVSQGLRDAL--LEERRRYCFLVDKHCSVAKHEIAYH 205 (223)
T ss_pred HHHHHHHHcccCCCcccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222211 23334445777777653 2222 233444443 3556677789999997665555433
No 259
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=27.67 E-value=1.4e+02 Score=30.28 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=43.4
Q ss_pred HHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 009584 37 VRQIYSHMKHLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKV 92 (531)
Q Consensus 37 l~~v~~~~~leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~Kql 92 (531)
+|..|...-|-=+|--|...|.+|+-|+.....-|..|+++-...=.+.+.|++.+
T Consensus 145 VL~~~~D~vL~LKHNLNA~AI~sL~~e~~~~~~di~~Li~~m~~sI~ead~FI~~l 200 (201)
T PF11172_consen 145 VLAAFRDQVLYLKHNLNAQAIASLQGEFSSIESDISQLIKEMERSIAEADAFIASL 200 (201)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444333343445557777999999999999999999999988888999998765
No 260
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=27.63 E-value=1.9e+02 Score=25.48 Aligned_cols=43 Identities=21% Similarity=0.411 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHh
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAW 99 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~aw 99 (531)
|.-+..||++.++.|+.|++|--..+-.+=+|---||-||.+.
T Consensus 28 vgd~e~eLerCK~sirrLeqevnkERFrmiYLQTlLAkErksy 70 (79)
T PF09036_consen 28 VGDIEQELERCKASIRRLEQEVNKERFRMIYLQTLLAKERKSY 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 5668899999999999999998877777888877777776543
No 261
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=27.55 E-value=1.6e+02 Score=34.30 Aligned_cols=49 Identities=20% Similarity=0.401 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 009584 68 RTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKN 124 (531)
Q Consensus 68 r~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~ 124 (531)
|+++..|.++++...+ .+..+..+-|.. ...|-++++.+|| .||||||-
T Consensus 3 RdkL~~Lq~ek~~E~~---~l~~~~~~lk~~-~~~el~~Lk~~vq----kLEDEKKF 51 (654)
T PF09798_consen 3 RDKLELLQQEKQKERQ---ALKSSVEELKES-HEEELNKLKSEVQ----KLEDEKKF 51 (654)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHH-hHHHHHHHHHHHH----HHHHHHHH
Confidence 5677778777665544 333333333322 2345567777777 56777763
No 262
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=27.44 E-value=72 Score=30.04 Aligned_cols=14 Identities=14% Similarity=0.423 Sum_probs=8.7
Q ss_pred cccCcCCCCChHHH
Q 009584 24 TKWNPVCLKTPAEV 37 (531)
Q Consensus 24 TKWd~~~lkts~el 37 (531)
+-|||..+...+.+
T Consensus 36 ~PyDpd~I~aAD~~ 49 (131)
T PF04859_consen 36 SPYDPDKIQAADEA 49 (131)
T ss_pred CCCCHHHHHHHHHH
Confidence 34777777666544
No 263
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=27.41 E-value=1.3e+03 Score=28.96 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009584 138 ELADAKVSAKRYMQDYEKERKERELIEEVCDELAKE 173 (531)
Q Consensus 138 ELae~Kss~~~a~kelE~ERkaRellE~vCdELAke 173 (531)
.+..++..+.+--.++++.++.-..++.-=.+|-++
T Consensus 311 ~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~feke 346 (1141)
T KOG0018|consen 311 DIETAKKDYRALKETIERLEKELKAVEGAKEEFEKE 346 (1141)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555554444444333333333
No 264
>PRK09039 hypothetical protein; Validated
Probab=27.39 E-value=7.8e+02 Score=26.22 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 009584 105 EKIRAFIDDLKAEISRERKNRQRIEIV 131 (531)
Q Consensus 105 eki~a~i~slk~ELe~ERk~Rkr~E~l 131 (531)
+.+.+.|..+-+-|.-|+.....++..
T Consensus 56 ~~L~~qIa~L~e~L~le~~~~~~l~~~ 82 (343)
T PRK09039 56 DRLNSQIAELADLLSLERQGNQDLQDS 82 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 333333444666666666554444433
No 265
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=27.34 E-value=6.6e+02 Score=25.39 Aligned_cols=39 Identities=13% Similarity=0.219 Sum_probs=20.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHh
Q 009584 52 SAVSMVAALEAEVEQARTRIQELETERRSS----KKKLEHFLRK 91 (531)
Q Consensus 52 s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~----k~eie~l~Kq 91 (531)
+.-.|++--..||+.- ..|+...++|-.. -..+..|.++
T Consensus 6 ~h~~l~~~~~~ei~lL-e~i~~F~reRa~iE~EYA~~L~~L~kq 48 (237)
T cd07657 6 GHEALLKRQDAELRLL-ETMKKYMAKRAKSDREYASTLGSLANQ 48 (237)
T ss_pred hHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555565554 4566666666433 3445555555
No 266
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=27.05 E-value=1.3e+03 Score=28.61 Aligned_cols=92 Identities=18% Similarity=0.190 Sum_probs=64.2
Q ss_pred CCChHHHHHhhhhcc-cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHH
Q 009584 31 LKTPAEVRQIYSHMK-HLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRA 109 (531)
Q Consensus 31 lkts~el~~v~~~~~-leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a 109 (531)
...+..++.|++.+. -.=.+...-+.|.-|..+|.+-++.|++-+++--.+++.++. |....++++....+.-..+.
T Consensus 156 ~~~~t~l~~vl~~~~d~LyKP~GrnP~iNq~l~klkq~~~ei~e~eke~a~yh~lLe~--r~~~~~rl~~l~~elr~~~~ 233 (984)
T COG4717 156 SPASTKLLEVLNKEADSLYKPSGRNPQINQLLEKLKQERNEIDEAEKEYATYHKLLES--RRAEHARLAELRSELRADRD 233 (984)
T ss_pred CcchHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHH
Confidence 334577888888886 333455566889999999999999999988888888877765 34455566666666666666
Q ss_pred HHHHHHHHHHHHHHh
Q 009584 110 FIDDLKAEISRERKN 124 (531)
Q Consensus 110 ~i~slk~ELe~ERk~ 124 (531)
.|+.+.+.++.=+.+
T Consensus 234 ~i~~~~~~v~l~~~l 248 (984)
T COG4717 234 HIRALRDAVELWPRL 248 (984)
T ss_pred HHHHHHHHHhhHHHH
Confidence 666666665554443
No 267
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=27.02 E-value=1.1e+03 Score=27.68 Aligned_cols=55 Identities=20% Similarity=0.343 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhH-----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 009584 69 TRIQELETERRSSKKKLEHFLRKVS-----EEKAAWRSREHEKIRAFIDDLKAEISRERK 123 (531)
Q Consensus 69 ~rI~eL~~E~~s~k~eie~l~Kqla-----EEK~awKskE~eki~a~i~slk~ELe~ERk 123 (531)
..|.+-+-|....+.+.+.|-+++. -+-.-.-+.|+.++...|..+.-+++..++
T Consensus 301 ~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k 360 (581)
T KOG0995|consen 301 SEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSK 360 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555554443 233334455666666666666666655444
No 268
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=27.00 E-value=4.8e+02 Score=23.65 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=13.1
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 009584 84 KLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEIS 119 (531)
Q Consensus 84 eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe 119 (531)
++..+.++|...+...-..+..+....++....+|.
T Consensus 58 el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~ 93 (158)
T PF03938_consen 58 ELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQ 93 (158)
T ss_dssp HHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Confidence 334444444444333333344444444444444433
No 269
>COG2317 Zn-dependent carboxypeptidase [Amino acid transport and metabolism]
Probab=26.83 E-value=4e+02 Score=30.37 Aligned_cols=108 Identities=27% Similarity=0.333 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhhhccHHH-HHHHHHhhHHHH---hhhhhhHH--HHHHHHhhHHHhhhhhhhhhhhhhHHhhHHHHHH
Q 009584 161 ELIEEVCDELAKEIGEDKAE-VEALKRESMKLR---EEVDDERK--MLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKL 234 (531)
Q Consensus 161 ellE~vCdELAkeI~edkaE-Ve~lKres~k~r---eE~eeER~--MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL 234 (531)
++|+.+-.|. .+.++++- |++++|+-.++. +|+-+|-. --+-.-+||+-|-+-...--+-- ...+-.|
T Consensus 65 ~ll~~a~~e~--~L~e~~~~~vre~~r~~~~~~~iP~e~~~e~s~~~s~a~~aWreAr~knDf~~F~p~----Lekiv~l 138 (497)
T COG2317 65 ELLEKAEEEK--DLSEIEAGVVRELKREYEKAKKIPEELVKEYSKLTSKAEHAWREAREKNDFSIFKPY----LEKIVEL 138 (497)
T ss_pred HHHHHhhhcc--CccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhcccHhhhhHH----HHHHHHH
Confidence 3444443333 34444444 666666655443 33323322 22335579988866554332222 2233334
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHHHhhccccccccccccCCC-CCCCcchhhhcccCC
Q 009584 235 VAELEAFLSSRSINPDIQEMKEAEMLRQAAASVNIQEIKEFTYEPP-NPDDIFSVFEDVNFG 295 (531)
Q Consensus 235 ~~elE~FL~sk~~~~d~~~~r~a~~~rqs~~Sv~~~~ike~sy~pp-~~dD~~sifeel~~~ 295 (531)
.-+.-.++.-..+.. +| -+ --|+|- ..+|++.||++|+..
T Consensus 139 ~re~A~~~~~~~~pY------da----------Ll-----d~yEpG~t~~~i~~vF~~Lk~~ 179 (497)
T COG2317 139 KREFAEYRGYEEHPY------DA----------LL-----DLYEPGLTVRDVDRVFAELKKE 179 (497)
T ss_pred HHHHHHhcccccCcH------HH----------HH-----HhhcCCCcHHHHHHHHHHHHHH
Confidence 444433333222111 11 01 258887 779999999999765
No 270
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=26.62 E-value=7.4e+02 Score=25.69 Aligned_cols=40 Identities=15% Similarity=0.032 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 112 DDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYE 154 (531)
Q Consensus 112 ~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE 154 (531)
..+-.+|+.+||. .-.-.+||-++|...-..+.++-+.|+
T Consensus 98 ~~~~~~l~~~rk~---~~~~~~klqk~l~~~~~~leksKk~Y~ 137 (252)
T cd07675 98 MRYSHDLKGERKM---HLQEGRKAQQYLDMCWKQMDNSKKKFE 137 (252)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566665543 224455555555444444444444444
No 271
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=26.44 E-value=5.1e+02 Score=30.11 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=19.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 009584 122 RKNRQRIEIVNSKLVNELADA----KVSAKRYMQDYEKERK 158 (531)
Q Consensus 122 Rk~Rkr~E~ln~KL~~ELae~----Kss~~~a~kelE~ERk 158 (531)
+++|+..|.++.+-.++|.+. +..+...-+.||.+++
T Consensus 463 ~kL~~E~e~~q~~~~~~l~~~~~~~~~em~~~r~tlE~k~~ 503 (588)
T KOG3612|consen 463 EKLRQEFEELQQTSRRELPVPLRNFELEMAEMRKTLEQKHA 503 (588)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHH
Confidence 356666666666666666443 3333444455555443
No 272
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=26.41 E-value=9.8e+02 Score=27.09 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 137 NELADAKVSAKRYMQDYEKERKERELIEEVCD 168 (531)
Q Consensus 137 ~ELae~Kss~~~a~kelE~ERkaRellE~vCd 168 (531)
+||.+-+..|.++.--|+.+|+.+.+-|.+..
T Consensus 100 r~~~~q~~e~~n~~~~l~~~~~~~r~~e~la~ 131 (459)
T KOG0288|consen 100 RELREQKAEFENAELALREMRRKMRIAERLAE 131 (459)
T ss_pred HHHHHhhhhhccchhhHHHHHHHHHHHHHHHH
Confidence 56777778888888778878777777776655
No 273
>PF15294 Leu_zip: Leucine zipper
Probab=26.37 E-value=8e+02 Score=26.04 Aligned_cols=82 Identities=26% Similarity=0.404 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHH---HH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIV---NS 133 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~l---n~ 133 (531)
|..|+.|.+.++.|++-|+...-. --+|..++.+.|.+++...-+-+ .+..+=.- =.
T Consensus 134 i~rLq~EN~kLk~rl~~le~~at~-------------------~l~Ek~kl~~~L~~lq~~~~~~~-~k~~~~~~~q~l~ 193 (278)
T PF15294_consen 134 IDRLQEENEKLKERLKSLEKQATS-------------------ALDEKSKLEAQLKELQDEQGDQK-GKKDLSFKAQDLS 193 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHhhh-ccccccccccchh
Confidence 555666666666666555442211 12356777788877777433322 22111000 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 134 KLVNELADAKVSAKRYMQDYEKERK 158 (531)
Q Consensus 134 KL~~ELae~Kss~~~a~kelE~ERk 158 (531)
-|-.-++-+|..|.+++.+.+..-+
T Consensus 194 dLE~k~a~lK~e~ek~~~d~~~~~k 218 (278)
T PF15294_consen 194 DLENKMAALKSELEKALQDKESQQK 218 (278)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2444556666677777766665433
No 274
>PRK14163 heat shock protein GrpE; Provisional
Probab=26.29 E-value=7.1e+02 Score=25.39 Aligned_cols=62 Identities=15% Similarity=0.279 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEI 118 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~EL 118 (531)
+..|+.+|+..+..+.+|...-.+...+++.|.|+...|+..-+.--.+++-..|-.+-+.|
T Consensus 42 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnL 103 (214)
T PRK14163 42 TAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDV 103 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHH
Confidence 46777888888888888876667777788888887777766554444444444444444444
No 275
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=26.23 E-value=1.6e+02 Score=33.03 Aligned_cols=61 Identities=25% Similarity=0.332 Sum_probs=48.0
Q ss_pred hccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHhhHHHhhhhhhhhhhhhhHHhhHHHHHHHHHHHH
Q 009584 175 GEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEA 240 (531)
Q Consensus 175 ~edkaEVe~lKres~k~reE~eeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~elE~ 240 (531)
=+|+.||+.+|++-.|+..-+..-+-=+++. +++|-+|.+++.+|..=+++...|+.|+.+
T Consensus 416 v~~edeirrlkrdm~klkq~l~RN~gd~v~s-----~~lqe~L~ev~~~Lasl~aqea~ls~eq~s 476 (486)
T KOG2185|consen 416 VEYEDEIRRLKRDMLKLKQMLNRNKGDLVVS-----EALQERLKEVRKALASLLAQEAALSNEQVS 476 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Confidence 3678888888888888876666555544444 689999999999999999999888888753
No 276
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=26.18 E-value=7e+02 Score=25.26 Aligned_cols=119 Identities=16% Similarity=0.324 Sum_probs=72.1
Q ss_pred cccccccchhh---hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 009584 44 MKHLDQQVSAV---SMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISR 120 (531)
Q Consensus 44 ~~leeq~~s~~---Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ 120 (531)
|++-+|..-.| .-+.-|..+...-...++.|.++.+...-+|..|-+.|+-|-+ ..-|++|+.|.
T Consensus 65 IY~a~QDqF~~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eem----------Qe~i~~L~kev-- 132 (201)
T KOG4603|consen 65 IYFADQDQFDMVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEM----------QEEIQELKKEV-- 132 (201)
T ss_pred eEeecHHhhcCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH----------HHHHHHHHHHH--
Confidence 44555554333 4567889999999999999999999999999999999887644 34455555554
Q ss_pred HHHhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH
Q 009584 121 ERKNRQRIEIVNSK----LVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDK 178 (531)
Q Consensus 121 ERk~Rkr~E~ln~K----L~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edk 178 (531)
+-.|.|++.+-.- --.+-..|+.-..++-++. ||.+.+.-++-|.+..+.--++
T Consensus 133 -~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~w---rk~krmf~ei~d~~~e~~pk~k 190 (201)
T KOG4603|consen 133 -AGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEW---RKRKRMFREIIDKLLEGLPKKK 190 (201)
T ss_pred -HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcCCcchH
Confidence 3355555544221 1233344444444444433 3333355555555555544433
No 277
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=25.90 E-value=3.2e+02 Score=24.48 Aligned_cols=35 Identities=6% Similarity=0.049 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 009584 56 MVAALEAEVEQARTRIQELETERRSSKKKLEHFLR 90 (531)
Q Consensus 56 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~K 90 (531)
-...|+.++..++.++.+|.++....+.+|+.|-.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 36788899999999999999988888888877654
No 278
>PF04778 LMP: LMP repeated region; InterPro: IPR006864 This repeated sequence element is found in the LMP group of surface-located membrane proteins of Mycoplasma hominis. The the number of repeats in the protein affects the tendency of cells to spontaneously aggregate. Agglutination may be an important factor in colonization. Non-agglutinating microorganisms might easily be distributed whereas aggregation might provide a better chance to avoid an antibody response since some of the epitopes may be buried [].
Probab=25.89 E-value=5.8e+02 Score=25.13 Aligned_cols=38 Identities=18% Similarity=0.431 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhh
Q 009584 62 AEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWR 100 (531)
Q Consensus 62 ~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awK 100 (531)
.||++.|.+|++++.+-..+- ...-|+++|...+-+.+
T Consensus 72 ~eLq~tr~~I~eFi~~~K~Np-nY~~li~~Lt~~kd~k~ 109 (157)
T PF04778_consen 72 NELQQTRKQIDEFINKNKNNP-NYAELIKKLTQKKDSKN 109 (157)
T ss_pred HHHHHHHHHHHHHHhhccCCc-cHHHHHHHHHHHHHhhc
Confidence 689999999999998874444 56678888877766554
No 279
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=25.82 E-value=2.8e+02 Score=29.62 Aligned_cols=41 Identities=29% Similarity=0.279 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHH
Q 009584 151 QDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKL 191 (531)
Q Consensus 151 kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~ 191 (531)
+-=+|.|.+++-++.-|..|-+.-++.|..+..|-||..-+
T Consensus 241 RYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~yl 281 (294)
T KOG4571|consen 241 RYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYL 281 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666777777777777777666666666665554443
No 280
>PF13514 AAA_27: AAA domain
Probab=25.63 E-value=1.3e+03 Score=28.21 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHH
Q 009584 58 AALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSE 94 (531)
Q Consensus 58 ~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaE 94 (531)
.....+|..++..+..+.+........+...+..+..
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 650 (1111)
T PF13514_consen 614 LEAAEELRAARAELEALRARRAAARAALAAALAALGP 650 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3344666666666666666666666666666655433
No 281
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=25.48 E-value=7.6e+02 Score=25.45 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009584 57 VAALEAEVEQARTRIQELE 75 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~ 75 (531)
+..++++|..|++++..+.
T Consensus 88 l~~a~a~l~~a~a~l~~~~ 106 (346)
T PRK10476 88 VAQAQADLALADAQIMTTQ 106 (346)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544
No 282
>PRK04654 sec-independent translocase; Provisional
Probab=25.29 E-value=3.6e+02 Score=27.68 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 009584 109 AFIDDLKAEISRERKN 124 (531)
Q Consensus 109 a~i~slk~ELe~ERk~ 124 (531)
..+.+++.|+++|=++
T Consensus 41 ~~~~~vk~El~~El~~ 56 (214)
T PRK04654 41 MQWDSVKQELERELEA 56 (214)
T ss_pred HHHHHHHHHHHHhhhH
Confidence 3455566666655443
No 283
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=25.23 E-value=6.6e+02 Score=27.12 Aligned_cols=51 Identities=20% Similarity=0.287 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhccHHHHHHHHHhhHHHH
Q 009584 142 AKVSAKRYMQDYEKERKERELIE-EVCDELAKEIGEDKAEVEALKRESMKLR 192 (531)
Q Consensus 142 ~Kss~~~a~kelE~ERkaRellE-~vCdELAkeI~edkaEVe~lKres~k~r 192 (531)
.+..+.++++.||+=-.+++-+| ++-..|+.=+.+-|+.++.|++....+.
T Consensus 156 L~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~ 207 (342)
T PF06632_consen 156 LESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAK 207 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 34444556666666556665554 5667788889999999999998766553
No 284
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=25.02 E-value=5.3e+02 Score=23.53 Aligned_cols=82 Identities=22% Similarity=0.280 Sum_probs=56.1
Q ss_pred HHHhhhhcc---cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHH
Q 009584 37 VRQIYSHMK---HLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDD 113 (531)
Q Consensus 37 l~~v~~~~~---leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~s 113 (531)
+.-+.|||. ---.+.++-+.|..|-.-|---+.++=.++++....+-..+.|-.+|+.=+. .++|++.
T Consensus 11 v~if~nRmksns~RGrsIanDsaVqsLF~~lt~mH~~LL~~i~~~ee~R~~~E~lQdkL~qi~e---------AR~AlDa 81 (96)
T PF12210_consen 11 VEIFVNRMKSNSSRGRSIANDSAVQSLFQTLTAMHPQLLKYIQEQEEKRVYYEGLQDKLAQIKE---------ARAALDA 81 (96)
T ss_dssp HHHHHHHHHHHHHTT--GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHhHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
Confidence 445567776 1223346777788888888888888888888887788778888887776544 4678999
Q ss_pred HHHHHHHHHHhhhhHH
Q 009584 114 LKAEISRERKNRQRIE 129 (531)
Q Consensus 114 lk~ELe~ERk~Rkr~E 129 (531)
|++| ..+|+|+..|
T Consensus 82 lR~e--H~~klrr~aE 95 (96)
T PF12210_consen 82 LREE--HREKLRRQAE 95 (96)
T ss_dssp HHHH--HHHHHHHHH-
T ss_pred HHHH--HHHHHHHHhc
Confidence 9886 4556665544
No 285
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=24.91 E-value=6.3e+02 Score=24.32 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=19.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 116 AEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDY 153 (531)
Q Consensus 116 ~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kel 153 (531)
+.|+.=.+.++.++.+-...-..|.+++....+.+.+.
T Consensus 69 ~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A 106 (181)
T PRK13454 69 NDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAET 106 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555555554444444
No 286
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=24.86 E-value=7.1e+02 Score=24.93 Aligned_cols=99 Identities=20% Similarity=0.244 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cHHHHHHHHHhhHH
Q 009584 113 DLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGE--DKAEVEALKRESMK 190 (531)
Q Consensus 113 slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~e--dkaEVe~lKres~k 190 (531)
.+..+++.. ||....-+.|+.+.+.++-.++. ||+..-+..|+|+=+--.. ++.++..+|. .+
T Consensus 97 ~l~~~~e~~---RK~~ke~~~k~~k~~~~a~~~le----------KAK~~Y~~~c~e~Ekar~~~~~~~~~~~~k~--~~ 161 (234)
T cd07652 97 SLAKTVEKS---RKSIKETGKRAEKKVQDAEAAAE----------KAKARYDSLADDLERVKTGDPGKKLKFGLKG--NK 161 (234)
T ss_pred HHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhccCCCccccccccc--hh
Confidence 334444444 44466677778777777666664 4455555667766322211 1111121221 11
Q ss_pred HHhhhhhhHHHHHHHHhhHHHhhhhhhhhhhhhhHHhhHHHHHHHHHHHH
Q 009584 191 LREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEA 240 (531)
Q Consensus 191 ~reE~eeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~elE~ 240 (531)
-... -||..|-|..+|+.+.-.+....+.++.++..
T Consensus 162 ~~~~--------------~Ee~~~~K~~~A~~~Y~~~v~~~n~~q~e~~~ 197 (234)
T cd07652 162 SAAQ--------------HEDELLRKVQAADQDYASKVNAAQALRQELLS 197 (234)
T ss_pred hHHH--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 23455666777788877777777777777653
No 287
>PRK14148 heat shock protein GrpE; Provisional
Probab=24.42 E-value=7.2e+02 Score=24.86 Aligned_cols=41 Identities=7% Similarity=0.252 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKA 97 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~ 97 (531)
+.+|..+|...+..+.+|...-....-+++.+.|+...|+.
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e 82 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVS 82 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666655555555555555555554444
No 288
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=24.35 E-value=7.2e+02 Score=24.83 Aligned_cols=149 Identities=30% Similarity=0.401 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHH------HHHHHHHHHHHhhhhHH
Q 009584 56 MVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFID------DLKAEISRERKNRQRIE 129 (531)
Q Consensus 56 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~------slk~ELe~ERk~Rkr~E 129 (531)
+|+||+. -|.-|+.|+=|+.-....+..|-+..+.-|-++.+...++-.+.-. ++-..|. -+|
T Consensus 2 visALK~----LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~-------aAE 70 (178)
T PF14073_consen 2 VISALKN----LQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLS-------AAE 70 (178)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHH-------HHH
Confidence 4566654 4678999999998888888888777777666664433222211111 1111111 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhccH---HHHHHHHHhhHHHH-hhhhhhHHH
Q 009584 130 IVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKE----IGEDK---AEVEALKRESMKLR-EEVDDERKM 201 (531)
Q Consensus 130 ~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAke----I~edk---aEVe~lKres~k~r-eE~eeER~M 201 (531)
+=-+.|-+.|.-++.-+..| |.||.+ ++|.- ..|-++ ..+.. ..++.|-++..++- .-.--|.+|
T Consensus 71 tRCslLEKQLeyMRkmv~~a----e~er~~--~le~q-~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki 143 (178)
T PF14073_consen 71 TRCSLLEKQLEYMRKMVESA----EKERNA--VLEQQ-VSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKI 143 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhhhH--HHHHH-HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233334443333222222 333321 22221 222222 11122 23344555555542 223467888
Q ss_pred HHHHHhhHHHhhhhhhhhhhh
Q 009584 202 LQMAEVWREERVQMKLVDAKV 222 (531)
Q Consensus 202 LqmAEvWREERVQMKL~dAk~ 222 (531)
-++=+-+.+|-=|-||+.-|.
T Consensus 144 ~~LE~KL~eEehqRKlvQdkA 164 (178)
T PF14073_consen 144 KELEEKLQEEEHQRKLVQDKA 164 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999988865544
No 289
>PRK14147 heat shock protein GrpE; Provisional
Probab=24.24 E-value=4.7e+02 Score=25.49 Aligned_cols=19 Identities=32% Similarity=0.286 Sum_probs=12.0
Q ss_pred chhhhcccCC-CCCCccccc
Q 009584 286 FSVFEDVNFG-ESNEREIEP 304 (531)
Q Consensus 286 ~sifeel~~~-e~~~~ei~~ 304 (531)
..|.+.+..| -.++|-|.|
T Consensus 144 g~Vv~v~qkGY~l~~RvLRp 163 (172)
T PRK14147 144 GHVVQVFQKGYLLNERLLRP 163 (172)
T ss_pred CEEEEEeeCCcEeCCEeccC
Confidence 4566777776 666666644
No 290
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=24.18 E-value=1.3e+03 Score=27.65 Aligned_cols=47 Identities=21% Similarity=0.286 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSRE 103 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE 103 (531)
+.-|+..+..|-..|..|..|-...+.++..+-.+..+++..|++.-
T Consensus 354 ~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~ 400 (717)
T PF09730_consen 354 LEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEV 400 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577888888888888888888888888887777777777665533
No 291
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=24.07 E-value=1.2e+03 Score=27.22 Aligned_cols=183 Identities=19% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHH------HHHHHHHHHHHHHHHHHHHhhhhHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREH------EKIRAFIDDLKAEISRERKNRQRIEI 130 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~------eki~a~i~slk~ELe~ERk~Rkr~E~ 130 (531)
|..|+.|.++...+|.+|++.-.-.+..+.... --+.-+.-.-.|. +.++.-+..|.++|..--+...++-.
T Consensus 38 v~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~--~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~ 115 (617)
T PF15070_consen 38 VRTLKEEKEHDISRVQELERSLSELKNQMAEPP--PPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSR 115 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHH
Q 009584 131 VN----------SKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERK 200 (531)
Q Consensus 131 ln----------~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~reE~eeER~ 200 (531)
+| .+-..++.+-..-..+.+..++.+|-+=-..-.--.+|=..+.+.+.-...|--+-+-+-.-+.-|..
T Consensus 116 L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~ 195 (617)
T PF15070_consen 116 LNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQH 195 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHH
Q ss_pred HH-HHHHhhHHHhhhhhhhhhhhhhHHhhHHHHHHHHHHHHHHh
Q 009584 201 ML-QMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLS 243 (531)
Q Consensus 201 ML-qmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~elE~FL~ 243 (531)
+. .|+.-.= .+|.+|-+.+..|+.|...+..|..+=..++.
T Consensus 196 ~~keL~~kl~--~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~ 237 (617)
T PF15070_consen 196 VKKELQKKLG--ELQEKLHNLKEKLELKSQEAQSLQEQRDQYLG 237 (617)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
No 292
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=23.97 E-value=1.1e+03 Score=26.72 Aligned_cols=137 Identities=20% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHH
Q 009584 58 AALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEI-SRERKNRQRIEIVNSKLV 136 (531)
Q Consensus 58 ~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~EL-e~ERk~Rkr~E~ln~KL~ 136 (531)
+..+.-+..|+...+.+. +....+.+...++...+-..--.+.+..+..-+..-+.+| ..|+++.+|.+.|.+|.
T Consensus 21 ~~a~~~l~~Ae~eAe~i~---keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~- 96 (514)
T TIGR03319 21 RIAEKKLGSAEELAKRII---EEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKM- 96 (514)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHH--hhhhhh
Q 009584 137 NELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLR--EEVDDE 198 (531)
Q Consensus 137 ~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~r--eE~eeE 198 (531)
.+|..-+..+.+-.++|+...+.=+-++.-++++-.+...-=.++-.|-++-.|.. +.+++|
T Consensus 97 e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~eak~~l~~~~~~~ 160 (514)
T TIGR03319 97 ESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEE 160 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
No 293
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=23.90 E-value=7.8e+02 Score=29.63 Aligned_cols=12 Identities=50% Similarity=0.753 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 009584 60 LEAEVEQARTRI 71 (531)
Q Consensus 60 Lk~EL~~Ar~rI 71 (531)
|+.||+.-|.+|
T Consensus 434 Le~elekLk~ei 445 (762)
T PLN03229 434 LEGEVEKLKEQI 445 (762)
T ss_pred HHHHHHHHHHHH
Confidence 344444433333
No 294
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=23.71 E-value=1.3e+03 Score=27.69 Aligned_cols=69 Identities=19% Similarity=0.202 Sum_probs=39.0
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 91 KVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKER 160 (531)
Q Consensus 91 qlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaR 160 (531)
|+.+||..-...+.+.-++..+ =+.+-..|+|+++..+.--++.-+|=..-|--..++-|+.++++++.
T Consensus 269 ~~leeKrlk~~~~~eek~~~ke-E~~kekee~Klekd~KKqqkekEkeEKrrKdE~Ek~kKqeek~KR~k 337 (811)
T KOG4364|consen 269 QVLEEKRLKEKEQKEEKKAIKE-ENNKEKEETKLEKDIKKQQKEKEKEEKRRKDEQEKLKKQEEKQKRAK 337 (811)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3555555444333333222222 33444556677777766666666666666666666677777776654
No 295
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=23.69 E-value=7.1e+02 Score=24.53 Aligned_cols=103 Identities=17% Similarity=0.291 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLV 136 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 136 (531)
|.-++..|..++.-+-.+++.++...++++.+-..+ .-|. .++..||+ .=|-=||
T Consensus 33 irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~----~~~~----~~A~~Al~-----------------~G~EdLA 87 (219)
T TIGR02977 33 IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQV----ADWQ----EKAELALS-----------------KGREDLA 87 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH----HHHHHHHH-----------------CCCHHHH
Confidence 455566666777777777766666665544443322 2232 23333333 2233367
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHh
Q 009584 137 NELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRE 187 (531)
Q Consensus 137 ~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKre 187 (531)
++...-|..+...+..|+.+-. -+...+++|-..|.+++.+++.+|..
T Consensus 88 r~Al~~k~~~~~~~~~l~~~~~---~~~~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 88 RAALIEKQKAQELAEALERELA---AVEETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666666666666666665443 36777777777777777777777654
No 296
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=23.27 E-value=91 Score=33.37 Aligned_cols=31 Identities=35% Similarity=0.518 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 009584 61 EAEVEQARTRIQELETERRSSKKKLEHFLRK 91 (531)
Q Consensus 61 k~EL~~Ar~rI~eL~~E~~s~k~eie~l~Kq 91 (531)
+.||+-+..||.+|+++.++.++++..|-++
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5788888888888888888888887776554
No 297
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.21 E-value=1.2e+02 Score=31.52 Aligned_cols=84 Identities=27% Similarity=0.395 Sum_probs=54.1
Q ss_pred hhhhhhhhhHHhhHHHHHHHHHHHHHHhh-c-CCCCchhHHHH-HHHHHHHhhccccccc------cccccCCC------
Q 009584 216 KLVDAKVAVEQKYSQMNKLVAELEAFLSS-R-SINPDIQEMKE-AEMLRQAAASVNIQEI------KEFTYEPP------ 280 (531)
Q Consensus 216 KL~dAk~~leeK~s~ldkL~~elE~FL~s-k-~~~~d~~~~r~-a~~~rqs~~Sv~~~~i------ke~sy~pp------ 280 (531)
+|..-.-.+.+|+..|..=+.++|+||.+ + ....+.+.+.+ -+.++-.+.+|++.+- ....|.|-
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~aG~v~V~G~Gl~ITi~d~~~~~~~~~~~~ 133 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLAGSVPVTGPGLVITIDDPGYSPNGVGPNS 133 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCcCCcEEEEecCCCCCcccCCCCc
Confidence 44444455667776666666777777777 3 22334445544 6788999999998863 22333331
Q ss_pred ---CCCCcchhhhcccCCCCCC
Q 009584 281 ---NPDDIFSVFEDVNFGESNE 299 (531)
Q Consensus 281 ---~~dD~~sifeel~~~e~~~ 299 (531)
.++|+.+|.-+|++.-+..
T Consensus 134 ~vv~~~dl~~viNeL~~sGAEa 155 (247)
T COG3879 134 QVVHDDDLQAVINELNISGAEA 155 (247)
T ss_pred cccCHHHHHHHHHHHHhccchh
Confidence 2378889999999985544
No 298
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=22.99 E-value=2.2e+02 Score=25.81 Aligned_cols=41 Identities=24% Similarity=0.354 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKA 97 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~ 97 (531)
|..|-.++..-+.+|.+|+.|-...+-+-++|.+.|.+...
T Consensus 17 l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 17 LGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67788899999999999999999999999999988887644
No 299
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=22.99 E-value=8.2e+02 Score=24.97 Aligned_cols=83 Identities=16% Similarity=0.150 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH---H
Q 009584 60 LEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKL---V 136 (531)
Q Consensus 60 Lk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL---~ 136 (531)
+...|+.+++.+..+.++....+... +..+-+..++.++..+.+|+.=++.-.|.+.|..+= .
T Consensus 79 ~~~~l~~~~a~l~~~~~~l~~~~~~~--------------~~~~i~~~~~~l~~ak~~l~~a~~~~~r~~~L~~~g~vs~ 144 (331)
T PRK03598 79 YENALMQAKANVSVAQAQLDLMLAGY--------------RDEEIAQARAAVKQAQAAYDYAQNFYNRQQGLWKSRTISA 144 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 45566666666666665433222110 011223334455555556655554444444443322 1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 009584 137 NELADAKVSAKRYMQDYEKE 156 (531)
Q Consensus 137 ~ELae~Kss~~~a~kelE~E 156 (531)
.++.+++..+..+...++.-
T Consensus 145 ~~~~~~~~~~~~a~~~~~~a 164 (331)
T PRK03598 145 NDLENARSSRDQAQATLKSA 164 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555444444444433
No 300
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=22.89 E-value=1.2e+03 Score=26.64 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhh
Q 009584 159 ERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDE 198 (531)
Q Consensus 159 aRellE~vCdELAkeI~edkaEVe~lKres~k~reE~eeE 198 (531)
.++-|+.+-.=|-..|..++..|+.+-.+..+.+..+.++
T Consensus 134 ~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~q 173 (475)
T PRK10361 134 NRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHE 173 (475)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666767777777777877777776666666555444
No 301
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=22.66 E-value=3.3e+02 Score=26.32 Aligned_cols=55 Identities=25% Similarity=0.470 Sum_probs=0.0
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 009584 48 DQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRE 121 (531)
Q Consensus 48 eq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~E 121 (531)
.++..--.+|..|+.+|.+-+..+--|.. -++++++++ |++...|..+++||++|
T Consensus 54 r~~~~~~~~v~~~~~~i~~k~~El~~L~~---~d~~kv~~~----------------E~L~d~v~eLkeel~~e 108 (146)
T PF05852_consen 54 REECEIKNKVSSLETEISEKKKELSHLKK---FDRKKVEDL----------------EKLTDRVEELKEELEFE 108 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHH----------------HHHHHHHHHHHHHHHHH
No 302
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=22.56 E-value=7e+02 Score=24.01 Aligned_cols=85 Identities=12% Similarity=0.132 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 009584 58 AALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVN 137 (531)
Q Consensus 58 ~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ 137 (531)
+-+..=|+.=+..|...+.+-...+.+.+.++.++.+.....|..-++.+..+......+.+.. .+..+....+
T Consensus 54 ~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~------~~~A~~e~~~ 127 (181)
T PRK13454 54 PRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVA------IAKADAEIAA 127 (181)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Confidence 3445556777788888888888888888999888888888777666666655544443333322 2233445555
Q ss_pred HHHHHHHHHHH
Q 009584 138 ELADAKVSAKR 148 (531)
Q Consensus 138 ELae~Kss~~~ 148 (531)
.+++++.-+.+
T Consensus 128 ~~aea~~~I~~ 138 (181)
T PRK13454 128 KAAESEKRIAE 138 (181)
T ss_pred HHHHHHHHHHH
Confidence 55555543333
No 303
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=22.55 E-value=2.6e+02 Score=30.49 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=30.0
Q ss_pred Hhhhhcc-cccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 009584 39 QIYSHMK-HLDQQVSAVSMVAALEAEVEQARTRIQELET 76 (531)
Q Consensus 39 ~v~~~~~-leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~ 76 (531)
.+-|.++ ++.|---.||||+.|+.||-.-+++...+..
T Consensus 206 r~kngvfdp~~qaevq~~Lvs~Le~eL~~iqaqL~tvks 244 (372)
T COG3524 206 RIKNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKS 244 (372)
T ss_pred HhhcCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666 7777767899999999999998888776654
No 304
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=22.44 E-value=1.1e+03 Score=26.40 Aligned_cols=17 Identities=29% Similarity=0.671 Sum_probs=8.4
Q ss_pred ccccccccccCCCCCCC
Q 009584 268 NIQEIKEFTYEPPNPDD 284 (531)
Q Consensus 268 ~~~~ike~sy~pp~~dD 284 (531)
|+.|+++.--.||.+-|
T Consensus 279 h~~~i~~kY~~~~~T~d 295 (448)
T COG1322 279 HIRDIRKKYLKPPETTD 295 (448)
T ss_pred HHHhhHHhhccCCCCCC
Confidence 45555554455554433
No 305
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=22.17 E-value=2.3e+02 Score=23.44 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEE 95 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEE 95 (531)
+..++.++..+|..+..|+.-..-+...|+.+++.+.+-
T Consensus 61 ~~~~r~~~~~~r~~l~~ll~~~~~D~~~i~a~~~~~~~~ 99 (125)
T PF13801_consen 61 MRALRQELRAARQELRALLAAPPPDEAAIEALLEEIREA 99 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 445555555555555555554444455555554444433
No 306
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.16 E-value=1.4e+03 Score=27.19 Aligned_cols=131 Identities=17% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 009584 59 ALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNE 138 (531)
Q Consensus 59 aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~E 138 (531)
+|-.|-..-..+..||+++-...+.+||.+-.-|+.=...-|. ..++.++.|--+=+.+-+--.-+..-
T Consensus 40 ~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk-----------~~~~g~e~EesLLqESaakE~~yl~k 108 (772)
T KOG0999|consen 40 ELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKK-----------VARDGEEREESLLQESAAKEEYYLQK 108 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhccchhhHHHHHHHHHHhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHH
Q 009584 139 LADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQ 203 (531)
Q Consensus 139 Lae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~reE~eeER~MLq 203 (531)
+.+...-+++.-++|.+-+-.++.|+.+..+|-.--...+.+-..||-+.... -..|-+||+
T Consensus 109 I~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~---KfRE~Rlls 170 (772)
T KOG0999|consen 109 ILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEY---KFREARLLS 170 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHH---HHHHHHHHH
No 307
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=22.10 E-value=1.7e+03 Score=28.47 Aligned_cols=99 Identities=10% Similarity=0.167 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhh-----------------hhhHHHHHHHHhh
Q 009584 146 AKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEV-----------------DDERKMLQMAEVW 208 (531)
Q Consensus 146 ~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~k~reE~-----------------eeER~MLqmAEvW 208 (531)
+-.++.+++++.+.|...+.+..+.-..|.++...++..-.--....... +..-++.-+.+-.
T Consensus 915 l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~~~~~~~~~~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~~l 994 (1294)
T KOG0962|consen 915 LEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQIYKLNECFEQYGFDDLRIAQLSESEEHLEERDNEVNEIKQKI 994 (1294)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888777777777777777666655322211111111 1112233344444
Q ss_pred HHHhhhhhhhhhhhhhHHhhHHHHHHHHHHHHHHhh
Q 009584 209 REERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSS 244 (531)
Q Consensus 209 REERVQMKL~dAk~~leeK~s~ldkL~~elE~FL~s 244 (531)
|.-..+-++..+-+.+-.-.+.+..+.-++..|..-
T Consensus 995 ~~~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld~Q 1030 (1294)
T KOG0962|consen 995 RNQYQRERNLKDNLTLRNLERKLKELERELSELDKQ 1030 (1294)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666666555555666666666665543
No 308
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=21.97 E-value=8.7e+02 Score=24.91 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHH
Q 009584 109 AFIDDLKAEISRERK 123 (531)
Q Consensus 109 a~i~slk~ELe~ERk 123 (531)
..+..|...|+.||+
T Consensus 243 e~~~~L~ekme~e~~ 257 (297)
T PF02841_consen 243 EHIKQLKEKMEEERE 257 (297)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555666666665
No 309
>PRK14157 heat shock protein GrpE; Provisional
Probab=21.94 E-value=5.4e+02 Score=26.47 Aligned_cols=64 Identities=11% Similarity=0.101 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 009584 59 ALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNE 138 (531)
Q Consensus 59 aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~E 138 (531)
.|..+|...+.++.+|...-....-+.+.+.|+...|+..- ....+.++++.
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~----------------------------~~~a~~~~~~d 132 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRF----------------------------RQHGIIDVLTA 132 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHH
Confidence 45667777777777665544555555555555444443211 11225678888
Q ss_pred HHHHHHHHHHHH
Q 009584 139 LADAKVSAKRYM 150 (531)
Q Consensus 139 Lae~Kss~~~a~ 150 (531)
|..+--.|.+|+
T Consensus 133 LLpvlDnLeRAl 144 (227)
T PRK14157 133 LLPALDDIDRIR 144 (227)
T ss_pred HhhhhhhHHHHH
Confidence 877766666664
No 310
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=21.92 E-value=1.4e+03 Score=27.61 Aligned_cols=85 Identities=24% Similarity=0.239 Sum_probs=41.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH
Q 009584 99 WRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDK 178 (531)
Q Consensus 99 wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edk 178 (531)
.-.++..++-....+++.++-.+...--..+. ..|.-+|++-|..+.+.-.+.++=.+.+-++|.==+=+-.. +++
T Consensus 505 ~~~~~~~~~l~~~~~~k~~~~~q~~~~~~~~~--~~~~~~l~~kke~i~q~re~~~~~~k~~l~~e~~~~i~E~~--~~~ 580 (809)
T KOG0247|consen 505 RILLRTKEILQNNKSLKEKECRQKLMNAQLES--QMLSSQLNDKKEQIEQLRDEIERLKKENLTTEYSIEILEST--EYE 580 (809)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcc--hhh
Confidence 33333334444444454444444433333333 67777777777777766555555444444443321111111 455
Q ss_pred HHHHHHHHh
Q 009584 179 AEVEALKRE 187 (531)
Q Consensus 179 aEVe~lKre 187 (531)
.+++.|..+
T Consensus 581 ~~i~~l~~e 589 (809)
T KOG0247|consen 581 EEIEALDQE 589 (809)
T ss_pred hhhHHHHHH
Confidence 555555543
No 311
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=21.54 E-value=1.1e+03 Score=25.97 Aligned_cols=66 Identities=17% Similarity=0.240 Sum_probs=39.1
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhccHHHHHHHHHh
Q 009584 122 RKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKE--RKERELIEEVCDELAKEIGEDKAEVEALKRE 187 (531)
Q Consensus 122 Rk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~E--RkaRellE~vCdELAkeI~edkaEVe~lKre 187 (531)
.+.+++++.+....-+.|++++......+.+...+ +...+++++.=.|..+-+..-+++++.-|+.
T Consensus 45 e~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~ 112 (445)
T PRK13428 45 ATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLLRAQ 112 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777766666777666665555554332 2233556666666666666666666655543
No 312
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.33 E-value=7.1e+02 Score=23.76 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhHH
Q 009584 64 VEQARTRIQELETERRSSKKKLEHFLRKVSE 94 (531)
Q Consensus 64 L~~Ar~rI~eL~~E~~s~k~eie~l~KqlaE 94 (531)
|--.=.|+.-++.+....+.+++.+.+|...
T Consensus 113 L~l~I~r~~~li~~l~~~~~~~~~~~kq~~~ 143 (192)
T PF05529_consen 113 LSLVIRRVHSLIKELIKLEEKLEALKKQAES 143 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334455666666666666666666666543
No 313
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.28 E-value=1.7e+03 Score=28.08 Aligned_cols=29 Identities=21% Similarity=0.365 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009584 132 NSKLVNELADAKVSAKRYMQDYEKERKER 160 (531)
Q Consensus 132 n~KL~~ELae~Kss~~~a~kelE~ERkaR 160 (531)
-.+|-++|..+..+-..+.++.+..++.|
T Consensus 326 ie~~ek~l~av~~~~~~fekei~~~~q~r 354 (1141)
T KOG0018|consen 326 IERLEKELKAVEGAKEEFEKEIEERSQER 354 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34566666666666566666666655533
No 314
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.28 E-value=2e+02 Score=22.44 Aligned_cols=35 Identities=40% Similarity=0.514 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhh
Q 009584 163 IEEVCDELAKEIGEDKAEVEALKRESMKLREEVDD 197 (531)
Q Consensus 163 lE~vCdELAkeI~edkaEVe~lKres~k~reE~ee 197 (531)
||.-|+-|-......+++-+.|+++-.+++.|+..
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777777776666666643
No 315
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=21.20 E-value=8.3e+02 Score=24.37 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhH
Q 009584 157 RKERELIEEVCDELAKEIGEDKAEVEALKRESM 189 (531)
Q Consensus 157 RkaRellE~vCdELAkeI~edkaEVe~lKres~ 189 (531)
.+..+-++.-++.+.+.|..-+.++..|.++..
T Consensus 62 ~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~ 94 (251)
T PF11932_consen 62 EREIENLEVYNEQLERQVASQEQELASLEQQIE 94 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666677777777777777666544
No 316
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=21.14 E-value=1e+03 Score=25.27 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHhhc
Q 009584 228 YSQMNKLVAELEAFLSSR 245 (531)
Q Consensus 228 ~s~ldkL~~elE~FL~sk 245 (531)
..++.+++..+++|+.+|
T Consensus 336 ~~~~~~~~~~~~~fv~~R 353 (353)
T cd09236 336 AKILSQFRDACKAWVYER 353 (353)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 346677777777777653
No 317
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=21.10 E-value=3.3e+02 Score=22.36 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLR 90 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~K 90 (531)
+..+..++..++.++.+|..+....+.++..|-.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566667777777777777766666666655543
No 318
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=20.95 E-value=9.1e+02 Score=24.75 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHH
Q 009584 64 VEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRA 109 (531)
Q Consensus 64 L~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a 109 (531)
|.=+...+.+++.|....-..|..+++.+.+.+.++..+...+...
T Consensus 80 lwPt~eelee~e~Ee~~~~~sl~em~k~~~~~~~~k~~k~~~Rek~ 125 (217)
T PF10147_consen 80 LWPTPEELEEQEYEEVEWPPSLQEMLKELREKKEEKEEKRLAREKE 125 (217)
T ss_pred hCCCHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566667777777677777777777777766665555554433
No 319
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.86 E-value=2.7e+02 Score=25.60 Aligned_cols=39 Identities=23% Similarity=0.393 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHH
Q 009584 57 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEE 95 (531)
Q Consensus 57 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEE 95 (531)
...|+.||++++.++.+-.++-...=.....||.+|+++
T Consensus 27 q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~ 65 (128)
T PF06295_consen 27 QAKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQD 65 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999888877776665544444455566666554
No 320
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=20.70 E-value=2.4e+02 Score=31.49 Aligned_cols=44 Identities=34% Similarity=0.517 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009584 128 IEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGED 177 (531)
Q Consensus 128 ~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~ed 177 (531)
.-.+|.+|++||++-+.-+.+.+--=|.=|| +|+.||--+||..
T Consensus 274 lrelnqrL~~EL~~~raLaeqListEEsiRk------~vARELHDeIGQn 317 (497)
T COG3851 274 LRELNQRLQKELARNRALAEQLISTEESIRK------DVARELHDEIGQN 317 (497)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHH------HHHHHHHHHhcch
Confidence 5568999999999877666666544444443 4556666666654
Done!